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[1][TOP] >UniRef100_B8JBA1 Transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter dehalogenans 2CP-1 RepID=B8JBA1_ANAD2 Length = 613 Score = 62.4 bits (150), Expect = 2e-08 Identities = 76/221 (34%), Positives = 80/221 (36%), Gaps = 44/221 (19%) Frame = -2 Query: 532 G*RGGQRIPPIPRRR----RRRQRAQDAAGGHHERRRR--GTGRPPQQ---------RPA 398 G G P P RR R RA A G RRR GTGRPP++ RPA Sbjct: 335 GPAGDASAPEWPGRRFARPERADRAPRGASGERPPRRRTPGTGRPPERGGRPPRTGDRPA 394 Query: 397 --ARGRPWWPPPRRPRPC*RWRRGGSPRDA----------PAAGGAPEDT---P*RAKGG 263 GRP P P RPR R G P A PAAG +P P R G Sbjct: 395 RTGAGRPAGPQPWRPRTPDRRGAGPGPGPARPGAGGGEGSPAAGASPRPARSGPGRPGGF 454 Query: 262 TVVAGDGVKKSGGRTTGQRERPTKGETVG-------GRPGGVDNDRGD--EGDEGNTQRT 110 G G GR TG G G GRPGG G GD G Sbjct: 455 ARPGGPGRPGGFGRPTGPGRPGGTGRPGGFARPGGPGRPGGFGRPTGSGRAGDSGRPGGP 514 Query: 109 GRCEGGMAAIRMTATAGCPRGSSSGSGR-----RAGEAGRP 2 GR GG G P G GSGR R G +GRP Sbjct: 515 GR-PGGFGRPGGFGRPGGP-GRPGGSGRPGGSGRPGASGRP 553 [2][TOP] >UniRef100_Q2IMJ3 LigA n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IMJ3_ANADE Length = 808 Score = 56.2 bits (134), Expect = 1e-06 Identities = 62/186 (33%), Positives = 72/186 (38%), Gaps = 13/186 (6%) Frame = -2 Query: 526 RGGQRI--PPIPRRRR------RRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPP 371 RG R+ P PR RR RR R + GG RR RP + RP R RP Sbjct: 174 RGEARVLPRPAPRARRVPGAGARRHRRDEGRGGRARRR----ARPARARPRGRARPRRRA 229 Query: 370 ---PRRPRPC*RWRRGGSPRDAPAAGGAPEDTP*RAKGGTVV--AGDGVKKSGGRTTGQR 206 R RP R R G +PR PA G P A G A GV+++G R +R Sbjct: 230 RGAAGRGRPG-RRRAGRAPRGPPAPAGGERVHPPLALRGAERDDAAAGVRRAGDRGADRR 288 Query: 205 ERPTKGETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGR 26 R GG RG G G R G GG R AG + +G GR Sbjct: 289 RR-----------GGARAARGRAGRGGGGARAGHGRGGGRPRRRARRAG--GRARAGRGR 335 Query: 25 RAGEAG 8 R AG Sbjct: 336 RRARAG 341 [3][TOP] >UniRef100_Q0ISD4 Os11g0533100 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group RepID=Q0ISD4_ORYSJ Length = 823 Score = 55.5 bits (132), Expect = 2e-06 Identities = 60/176 (34%), Positives = 69/176 (39%), Gaps = 8/176 (4%) Frame = -2 Query: 508 PPIPRRRRRRQRAQDAAGGHHERRR--RGTGRPPQQRPAARGRPWWPPPRRPRPC*RWRR 335 PP P R RR R + G H R R RGT R +P PPPR R Sbjct: 21 PPAPPRAPRRGRGR---GRRHHRGRGVRGTRRHRAAQP--------PPPRARAAAGRVVV 69 Query: 334 GGSPRDAPAAGGAPEDTP*RAKGGTVVA----GDGVKKSGGRTTGQRERPTKGETVGGRP 167 GG R A GG P P A G A G G GG G+R R +GE GG Sbjct: 70 GGLVRGPGAGGGVPAHDPGAAADGATSAARGRGRGGVSGGGERRGRRRR-GRGEEEGGGG 128 Query: 166 GG--VDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGRRAGEAGR 5 GG V + G G G R + EG +R+ G R RR G+A R Sbjct: 129 GGELVGSPGGPAGAGGRGVRRAQ-EGRRRQVRLHQRRGRSRLRLHTVRRRHGQARR 183 [4][TOP] >UniRef100_Q2IIH7 PE-PGRS family protein n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IIH7_ANADE Length = 677 Score = 55.1 bits (131), Expect = 3e-06 Identities = 62/201 (30%), Positives = 72/201 (35%), Gaps = 31/201 (15%) Frame = -2 Query: 517 QRIPPIPRRRRRRQRAQDAA------GGHHERRRRGTGRPPQQRPAARGRPWWPPPRRP- 359 +R P +PRRRR R AA GG RRRR R P R A R R P RR Sbjct: 24 RRGPRLPRRRRSRLAGAGAARRGGPRGGRARRRRRA--RRPDGRAARRQRRGAPGGRRGV 81 Query: 358 RPC*RWRRGGSPRDAPAAGGAPEDTP*RAKG--------GTVVAGDGVK----------- 236 R R R G AP G RA+ G A G++ Sbjct: 82 RGARRGRGGRGAGGAPGGSGRDGGGRGRARARRHAGPAAGARRAARGLRGRLARRARRHR 141 Query: 235 ---KSGGRTTGQRERPTKGETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTAT 65 + GGR + R +G +PGG RG G R R G A R A Sbjct: 142 RRARRGGRLAARGGRAGGARALGAQPGGPGRPRGGSRGRGGGDRRERPGRGGGAARAAAR 201 Query: 64 AGCPRG--SSSGSGRRAGEAG 8 G G + G G RAG G Sbjct: 202 PGAQPGPRARRGRGARAGRGG 222 [5][TOP] >UniRef100_Q82K53 Translation initiation factor IF-2 n=1 Tax=Streptomyces avermitilis RepID=IF2_STRAW Length = 1046 Score = 55.1 bits (131), Expect = 3e-06 Identities = 63/195 (32%), Positives = 75/195 (38%), Gaps = 21/195 (10%) Frame = -2 Query: 523 GGQRIPPIPRRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPPPRRPRPC*R 344 GG+ P R+ A+ A + R RPP +PAA RP P Sbjct: 55 GGKAAP------RKAAPAKPGAPSPAQAARPAAPRPPAPKPAAAERPAAAERPAAAPAAP 108 Query: 343 WRRGG---SPRDAPAAGG--APEDT-P*RAKGGTVVAGDGVK---KSGGRTTGQRERPTK 191 R G +PR APAA APE T P A A G + + G G T Sbjct: 109 GPRPGPKPAPRPAPAAPAPAAPEFTAPPSAPAAPAAAASGPRPGARPGAPKPGGARPATP 168 Query: 190 GETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPR--------GSSSG 35 G+ GG+ G DRGD GD G+ R G G A R A PR G S+G Sbjct: 169 GQGQGGQVRGERTDRGDRGDRGD--RQGAARPGGQAPRPGARPAGPRPGNNPFTSGGSTG 226 Query: 34 SGR----RAGEAGRP 2 R R G A RP Sbjct: 227 MARPQAPRPGGAPRP 241 [6][TOP] >UniRef100_A4FBY5 Putative uncharacterized protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FBY5_SACEN Length = 394 Score = 54.7 bits (130), Expect = 4e-06 Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 13/152 (8%) Frame = +3 Query: 3 GRPASPARRPLPLLLPR--GQPAVAVIRIAAIP----PSHLPVRCVFPSSPSSPLSLSTP 164 G P P RPLPL P G+P + + ++ +P PS P P P++ P Sbjct: 173 GNPLPPPPRPLPLPPPPLPGKPPIDICKLIPLPFVCGPSKPP--------PPPPVTPPPP 224 Query: 165 PGRPPTVSPFVGLSLCPVVLPPLF---FTPSPATTVPPFARHGV--SSGAPPAAGASRGD 329 P PP V+P ++ PV PP+ TP P T PP +G + GAP G G Sbjct: 225 PVTPPPVTPPPPVTPPPVTPPPVTPPPVTPPPVTPPPPDTGNGKPDTGGAPNPGGTDNGG 284 Query: 330 PPRRHR*QGRGRRGGGHH--GRPRAAGRCCGG 419 G GGG + G G GG Sbjct: 285 TDNGGTDNGGTDNGGGGYTGGGSYGGGEYTGG 316 [7][TOP] >UniRef100_A8P363 LF3, putative n=1 Tax=Brugia malayi RepID=A8P363_BRUMA Length = 946 Score = 54.3 bits (129), Expect = 5e-06 Identities = 55/190 (28%), Positives = 68/190 (35%), Gaps = 15/190 (7%) Frame = -2 Query: 532 G*RGGQRIPPI------PRRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPP 371 G R G+R PP P R A+D GG RRG R R + P PP Sbjct: 85 GRRSGRRRPPAGTTDPPPPPTPRGAEARDGHGG-----RRGRNRESHTRRSPPRDPSEPP 139 Query: 370 PRRPRPC*RWRRGGSPRDAPAAGGAPEDTP*RAKGGTVVAGDGVKKSGGRTTGQRERPTK 191 RR RP R PR A G GV+ G + G + + Sbjct: 140 ARRTRPRARHTAPIWPRQETAPAGTA----------------GVRGRDGASAGPHTQRQR 183 Query: 190 GETVG---------GRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSS 38 G T G GR G+D +R G+ T R GR G A+ R T G + Sbjct: 184 GATPGKSGIADPPSGRSPGIDRERA--GETTPTGRGGRSGGSRASARAGGTGGTRENADR 241 Query: 37 GSGRRAGEAG 8 +G GE G Sbjct: 242 VAGETGGETG 251 [8][TOP] >UniRef100_Q1QHE7 OmpA/MotB n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QHE7_NITHX Length = 673 Score = 53.9 bits (128), Expect = 7e-06 Identities = 48/156 (30%), Positives = 59/156 (37%), Gaps = 22/156 (14%) Frame = +3 Query: 3 GRPASPARRPLPLLLPRGQPAVAVIRIAAIPPSHLPVRCVFPSSPSSPLSLSTPPGRP-- 176 G P PA P P P A R AA PP H+ P P++P +TPP P Sbjct: 77 GAPERPAAPPPHAAPPHAPPPPAAARPAAPPPPHVTPPTATPPRPATPPPHATPPAAPAA 136 Query: 177 PTVSPFVGLSLCPVVLPPLFFTPSPATTVPPFARHGVSSGAPPAAGAS------------ 320 P +P + PV P P+P T PP + ++ PPAA S Sbjct: 137 PKAAPAPKPATPPVAPKP----PAPPTAAPPPSPSKGTTPPPPAATKSAPTTPAPQPQTT 192 Query: 321 -------RGDPPRRHR*QGRGRRG-GGHHGRPRAAG 404 G+P R RGR G G HG P G Sbjct: 193 SPSTPPANGEPNATRR-DERGRSGPGREHGGPGGPG 227 [9][TOP] >UniRef100_A9VXR1 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens PA1 RepID=A9VXR1_METEP Length = 669 Score = 53.9 bits (128), Expect = 7e-06 Identities = 54/169 (31%), Positives = 64/169 (37%), Gaps = 4/169 (2%) Frame = -2 Query: 496 RRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPPPRRPRPC*RWRRGGSPRD 317 R R R + H + R RG G P ++RP + GR PP RR P R R R Sbjct: 503 RPPRERSEGRPQRDFHGDSRERGEGAPRRERP-SEGR---PPERRGPPRDRPRAAEGERP 558 Query: 316 A-PAAGGAPEDTP*RAKGGTVVAGDGVKKSGGRTTGQR---ERPTKGETVGGRPGGVDND 149 A P G D P KG G G KS G G + +G+ GG GG Sbjct: 559 ARPPRGAEASDRPAFRKGPGKGPGGGAGKSFGGKPGFKGGDRDGARGDFKGGAKGG---P 615 Query: 148 RGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGRRAGEAGRP 2 RGD G + GR G A G P G + R G RP Sbjct: 616 RGDFKPGGGGRPGGRPGGRPGGKPGGAPGGRPGGGGKPAPRGGGRPSRP 664 [10][TOP] >UniRef100_Q84SQ4 Putative uncharacterized protein OSJNBb0047D08.13 n=1 Tax=Oryza sativa Japonica Group RepID=Q84SQ4_ORYSJ Length = 286 Score = 53.9 bits (128), Expect = 7e-06 Identities = 60/203 (29%), Positives = 74/203 (36%), Gaps = 36/203 (17%) Frame = -2 Query: 502 IPRRRRRRQRAQDAAGGHHERRRRGTGRPPQ--QRPAARGRPWWPPPRRPRPC*RWRRGG 329 +PR R + R + AG H +R GRP + +R AAR R P RR RP RW GG Sbjct: 48 VPRVSRTQGRGRLTAGPHAVATQRARGRPCRRGRREAARPR---PDGRRRRPSARW-SGG 103 Query: 328 SPRDA-----------PAAGGAPEDTP*RAKGGTVVAGDG-------------VKKSGGR 221 R+ P A A E+ GG DG V + G Sbjct: 104 QEREGKGERRRRSTAHPGATAATEEAAGAEGGGGAARVDGVDGVPAVGDRNGEVDEVGED 163 Query: 220 TTGQRERPTKGETVGGRPGGVDNDRGDEGD----------EGNTQRTGRCEGGMAAIRMT 71 +E + E V G GG GD GD E +R +GG AA+ Sbjct: 164 AANPKEAAPRWEAVRGDDGGGPELGGDGGDRERRRELESSEEEGRREAETDGGAAAL--- 220 Query: 70 ATAGCPRGSSSGSGRRAGEAGRP 2 G GSG R G G P Sbjct: 221 -----GAGGGGGSGGRKGMTGGP 238 [11][TOP] >UniRef100_C7CI29 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens DM4 RepID=C7CI29_METED Length = 669 Score = 53.5 bits (127), Expect = 9e-06 Identities = 51/166 (30%), Positives = 59/166 (35%), Gaps = 1/166 (0%) Frame = -2 Query: 496 RRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPPPRRPRPC*RWRRGGSPRD 317 R R R + H + R RG G P ++RP + GR PP RR P R R R Sbjct: 503 RPPRERSEGRPQRDFHGDSRERGEGAPRRERP-SEGR---PPERRGPPRDRPRAAEGERP 558 Query: 316 A-PAAGGAPEDTP*RAKGGTVVAGDGVKKSGGRTTGQRERPTKGETVGGRPGGVDNDRGD 140 A P G D P KG G G KS G G + G + G RGD Sbjct: 559 ARPPRGAEASDRPAFRKGPAKGPGGGAGKSFGGKLGFKGGDRDGARGDFKSGAKGGPRGD 618 Query: 139 EGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGRRAGEAGRP 2 G + GR G A G P G R G RP Sbjct: 619 FKPGGGGRPGGRPGGRPGGKPGGAPGGRPGGGGKPGPRGGGRPSRP 664 [12][TOP] >UniRef100_A4TCF8 Translation initiation factor IF-2 n=1 Tax=Mycobacterium gilvum PYR-GCK RepID=IF2_MYCGI Length = 930 Score = 53.5 bits (127), Expect = 9e-06 Identities = 50/141 (35%), Positives = 58/141 (41%), Gaps = 1/141 (0%) Frame = -2 Query: 427 TGRPPQQRPAARGR-PWWPPPRRPRPC*RWRRGGSPRDAPAAGGAPEDTP*RAKGGTVVA 251 + + P +RPA R + P P RP P G P P G P + P R GG Sbjct: 168 SSQQPVERPAPRPQGPAGPGGPRPGP---GAGGPRPGGGPRPGATPGNMPPRPVGGPRPG 224 Query: 250 GDGVKKSGGRTTGQRERPTKGETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMT 71 G G + GG G RPT G GRPGG G GN + G GG A Sbjct: 225 G-GPRPGGGPRPGAGPRPTPGG--AGRPGG--------GGGGNYRGGGAGGGGGAG---G 270 Query: 70 ATAGCPRGSSSGSGRRAGEAG 8 A AG RG G G R G+ G Sbjct: 271 AAAGGFRGRPGGGGGRPGQRG 291