AV432350 ( PM013f03_r )

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[1][TOP]
>UniRef100_B8JBA1 Transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter
           dehalogenans 2CP-1 RepID=B8JBA1_ANAD2
          Length = 613

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 76/221 (34%), Positives = 80/221 (36%), Gaps = 44/221 (19%)
 Frame = -2

Query: 532 G*RGGQRIPPIPRRR----RRRQRAQDAAGGHHERRRR--GTGRPPQQ---------RPA 398
           G  G    P  P RR     R  RA   A G    RRR  GTGRPP++         RPA
Sbjct: 335 GPAGDASAPEWPGRRFARPERADRAPRGASGERPPRRRTPGTGRPPERGGRPPRTGDRPA 394

Query: 397 --ARGRPWWPPPRRPRPC*RWRRGGSPRDA----------PAAGGAPEDT---P*RAKGG 263
               GRP  P P RPR   R   G  P  A          PAAG +P      P R  G 
Sbjct: 395 RTGAGRPAGPQPWRPRTPDRRGAGPGPGPARPGAGGGEGSPAAGASPRPARSGPGRPGGF 454

Query: 262 TVVAGDGVKKSGGRTTGQRERPTKGETVG-------GRPGGVDNDRGD--EGDEGNTQRT 110
               G G     GR TG       G   G       GRPGG     G    GD G     
Sbjct: 455 ARPGGPGRPGGFGRPTGPGRPGGTGRPGGFARPGGPGRPGGFGRPTGSGRAGDSGRPGGP 514

Query: 109 GRCEGGMAAIRMTATAGCPRGSSSGSGR-----RAGEAGRP 2
           GR  GG          G P G   GSGR     R G +GRP
Sbjct: 515 GR-PGGFGRPGGFGRPGGP-GRPGGSGRPGGSGRPGASGRP 553

[2][TOP]
>UniRef100_Q2IMJ3 LigA n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IMJ3_ANADE
          Length = 808

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 62/186 (33%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
 Frame = -2

Query: 526 RGGQRI--PPIPRRRR------RRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPP 371
           RG  R+   P PR RR      RR R  +  GG   RR     RP + RP  R RP    
Sbjct: 174 RGEARVLPRPAPRARRVPGAGARRHRRDEGRGGRARRR----ARPARARPRGRARPRRRA 229

Query: 370 ---PRRPRPC*RWRRGGSPRDAPAAGGAPEDTP*RAKGGTVV--AGDGVKKSGGRTTGQR 206
                R RP  R R G +PR  PA  G     P  A  G     A  GV+++G R   +R
Sbjct: 230 RGAAGRGRPG-RRRAGRAPRGPPAPAGGERVHPPLALRGAERDDAAAGVRRAGDRGADRR 288

Query: 205 ERPTKGETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGR 26
            R           GG    RG  G  G   R G   GG    R    AG    + +G GR
Sbjct: 289 RR-----------GGARAARGRAGRGGGGARAGHGRGGGRPRRRARRAG--GRARAGRGR 335

Query: 25  RAGEAG 8
           R   AG
Sbjct: 336 RRARAG 341

[3][TOP]
>UniRef100_Q0ISD4 Os11g0533100 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group
           RepID=Q0ISD4_ORYSJ
          Length = 823

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 60/176 (34%), Positives = 69/176 (39%), Gaps = 8/176 (4%)
 Frame = -2

Query: 508 PPIPRRRRRRQRAQDAAGGHHERRR--RGTGRPPQQRPAARGRPWWPPPRRPRPC*RWRR 335
           PP P R  RR R +   G  H R R  RGT R    +P        PPPR      R   
Sbjct: 21  PPAPPRAPRRGRGR---GRRHHRGRGVRGTRRHRAAQP--------PPPRARAAAGRVVV 69

Query: 334 GGSPRDAPAAGGAPEDTP*RAKGGTVVA----GDGVKKSGGRTTGQRERPTKGETVGGRP 167
           GG  R   A GG P   P  A  G   A    G G    GG   G+R R  +GE  GG  
Sbjct: 70  GGLVRGPGAGGGVPAHDPGAAADGATSAARGRGRGGVSGGGERRGRRRR-GRGEEEGGGG 128

Query: 166 GG--VDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGRRAGEAGR 5
           GG  V +  G  G  G   R  + EG    +R+    G  R       RR G+A R
Sbjct: 129 GGELVGSPGGPAGAGGRGVRRAQ-EGRRRQVRLHQRRGRSRLRLHTVRRRHGQARR 183

[4][TOP]
>UniRef100_Q2IIH7 PE-PGRS family protein n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C
           RepID=Q2IIH7_ANADE
          Length = 677

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 62/201 (30%), Positives = 72/201 (35%), Gaps = 31/201 (15%)
 Frame = -2

Query: 517 QRIPPIPRRRRRRQRAQDAA------GGHHERRRRGTGRPPQQRPAARGRPWWPPPRRP- 359
           +R P +PRRRR R     AA      GG   RRRR   R P  R A R R   P  RR  
Sbjct: 24  RRGPRLPRRRRSRLAGAGAARRGGPRGGRARRRRRA--RRPDGRAARRQRRGAPGGRRGV 81

Query: 358 RPC*RWRRGGSPRDAPAAGGAPEDTP*RAKG--------GTVVAGDGVK----------- 236
           R   R R G     AP   G       RA+         G   A  G++           
Sbjct: 82  RGARRGRGGRGAGGAPGGSGRDGGGRGRARARRHAGPAAGARRAARGLRGRLARRARRHR 141

Query: 235 ---KSGGRTTGQRERPTKGETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTAT 65
              + GGR   +  R      +G +PGG    RG     G   R  R   G  A R  A 
Sbjct: 142 RRARRGGRLAARGGRAGGARALGAQPGGPGRPRGGSRGRGGGDRRERPGRGGGAARAAAR 201

Query: 64  AGCPRG--SSSGSGRRAGEAG 8
            G   G  +  G G RAG  G
Sbjct: 202 PGAQPGPRARRGRGARAGRGG 222

[5][TOP]
>UniRef100_Q82K53 Translation initiation factor IF-2 n=1 Tax=Streptomyces avermitilis
           RepID=IF2_STRAW
          Length = 1046

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 63/195 (32%), Positives = 75/195 (38%), Gaps = 21/195 (10%)
 Frame = -2

Query: 523 GGQRIPPIPRRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPPPRRPRPC*R 344
           GG+  P      R+   A+  A    +  R    RPP  +PAA  RP         P   
Sbjct: 55  GGKAAP------RKAAPAKPGAPSPAQAARPAAPRPPAPKPAAAERPAAAERPAAAPAAP 108

Query: 343 WRRGG---SPRDAPAAGG--APEDT-P*RAKGGTVVAGDGVK---KSGGRTTGQRERPTK 191
             R G   +PR APAA    APE T P  A      A  G +   + G    G     T 
Sbjct: 109 GPRPGPKPAPRPAPAAPAPAAPEFTAPPSAPAAPAAAASGPRPGARPGAPKPGGARPATP 168

Query: 190 GETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPR--------GSSSG 35
           G+  GG+  G   DRGD GD G+  R G    G  A R  A    PR        G S+G
Sbjct: 169 GQGQGGQVRGERTDRGDRGDRGD--RQGAARPGGQAPRPGARPAGPRPGNNPFTSGGSTG 226

Query: 34  SGR----RAGEAGRP 2
             R    R G A RP
Sbjct: 227 MARPQAPRPGGAPRP 241

[6][TOP]
>UniRef100_A4FBY5 Putative uncharacterized protein n=1 Tax=Saccharopolyspora
           erythraea NRRL 2338 RepID=A4FBY5_SACEN
          Length = 394

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
 Frame = +3

Query: 3   GRPASPARRPLPLLLPR--GQPAVAVIRIAAIP----PSHLPVRCVFPSSPSSPLSLSTP 164
           G P  P  RPLPL  P   G+P + + ++  +P    PS  P        P  P++   P
Sbjct: 173 GNPLPPPPRPLPLPPPPLPGKPPIDICKLIPLPFVCGPSKPP--------PPPPVTPPPP 224

Query: 165 PGRPPTVSPFVGLSLCPVVLPPLF---FTPSPATTVPPFARHGV--SSGAPPAAGASRGD 329
           P  PP V+P   ++  PV  PP+     TP P T  PP   +G   + GAP   G   G 
Sbjct: 225 PVTPPPVTPPPPVTPPPVTPPPVTPPPVTPPPVTPPPPDTGNGKPDTGGAPNPGGTDNGG 284

Query: 330 PPRRHR*QGRGRRGGGHH--GRPRAAGRCCGG 419
                   G    GGG +  G     G   GG
Sbjct: 285 TDNGGTDNGGTDNGGGGYTGGGSYGGGEYTGG 316

[7][TOP]
>UniRef100_A8P363 LF3, putative n=1 Tax=Brugia malayi RepID=A8P363_BRUMA
          Length = 946

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 55/190 (28%), Positives = 68/190 (35%), Gaps = 15/190 (7%)
 Frame = -2

Query: 532 G*RGGQRIPPI------PRRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPP 371
           G R G+R PP       P    R   A+D  GG     RRG  R    R +    P  PP
Sbjct: 85  GRRSGRRRPPAGTTDPPPPPTPRGAEARDGHGG-----RRGRNRESHTRRSPPRDPSEPP 139

Query: 370 PRRPRPC*RWRRGGSPRDAPAAGGAPEDTP*RAKGGTVVAGDGVKKSGGRTTGQRERPTK 191
            RR RP  R      PR   A  G                  GV+   G + G   +  +
Sbjct: 140 ARRTRPRARHTAPIWPRQETAPAGTA----------------GVRGRDGASAGPHTQRQR 183

Query: 190 GETVG---------GRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSS 38
           G T G         GR  G+D +R   G+   T R GR  G  A+ R   T G    +  
Sbjct: 184 GATPGKSGIADPPSGRSPGIDRERA--GETTPTGRGGRSGGSRASARAGGTGGTRENADR 241

Query: 37  GSGRRAGEAG 8
            +G   GE G
Sbjct: 242 VAGETGGETG 251

[8][TOP]
>UniRef100_Q1QHE7 OmpA/MotB n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QHE7_NITHX
          Length = 673

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 48/156 (30%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
 Frame = +3

Query: 3   GRPASPARRPLPLLLPRGQPAVAVIRIAAIPPSHLPVRCVFPSSPSSPLSLSTPPGRP-- 176
           G P  PA  P     P   P  A  R AA PP H+      P  P++P   +TPP  P  
Sbjct: 77  GAPERPAAPPPHAAPPHAPPPPAAARPAAPPPPHVTPPTATPPRPATPPPHATPPAAPAA 136

Query: 177 PTVSPFVGLSLCPVVLPPLFFTPSPATTVPPFARHGVSSGAPPAAGAS------------ 320
           P  +P    +  PV   P    P+P T  PP +    ++  PPAA  S            
Sbjct: 137 PKAAPAPKPATPPVAPKP----PAPPTAAPPPSPSKGTTPPPPAATKSAPTTPAPQPQTT 192

Query: 321 -------RGDPPRRHR*QGRGRRG-GGHHGRPRAAG 404
                   G+P    R   RGR G G  HG P   G
Sbjct: 193 SPSTPPANGEPNATRR-DERGRSGPGREHGGPGGPG 227

[9][TOP]
>UniRef100_A9VXR1 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens PA1
           RepID=A9VXR1_METEP
          Length = 669

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 54/169 (31%), Positives = 64/169 (37%), Gaps = 4/169 (2%)
 Frame = -2

Query: 496 RRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPPPRRPRPC*RWRRGGSPRD 317
           R  R R   +     H + R RG G P ++RP + GR   PP RR  P  R R     R 
Sbjct: 503 RPPRERSEGRPQRDFHGDSRERGEGAPRRERP-SEGR---PPERRGPPRDRPRAAEGERP 558

Query: 316 A-PAAGGAPEDTP*RAKGGTVVAGDGVKKSGGRTTGQR---ERPTKGETVGGRPGGVDND 149
           A P  G    D P   KG     G G  KS G   G +       +G+  GG  GG    
Sbjct: 559 ARPPRGAEASDRPAFRKGPGKGPGGGAGKSFGGKPGFKGGDRDGARGDFKGGAKGG---P 615

Query: 148 RGDEGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGRRAGEAGRP 2
           RGD    G  +  GR  G        A  G P G    + R  G   RP
Sbjct: 616 RGDFKPGGGGRPGGRPGGRPGGKPGGAPGGRPGGGGKPAPRGGGRPSRP 664

[10][TOP]
>UniRef100_Q84SQ4 Putative uncharacterized protein OSJNBb0047D08.13 n=1 Tax=Oryza
           sativa Japonica Group RepID=Q84SQ4_ORYSJ
          Length = 286

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 60/203 (29%), Positives = 74/203 (36%), Gaps = 36/203 (17%)
 Frame = -2

Query: 502 IPRRRRRRQRAQDAAGGHHERRRRGTGRPPQ--QRPAARGRPWWPPPRRPRPC*RWRRGG 329
           +PR  R + R +  AG H    +R  GRP +  +R AAR R   P  RR RP  RW  GG
Sbjct: 48  VPRVSRTQGRGRLTAGPHAVATQRARGRPCRRGRREAARPR---PDGRRRRPSARW-SGG 103

Query: 328 SPRDA-----------PAAGGAPEDTP*RAKGGTVVAGDG-------------VKKSGGR 221
             R+            P A  A E+      GG     DG             V + G  
Sbjct: 104 QEREGKGERRRRSTAHPGATAATEEAAGAEGGGGAARVDGVDGVPAVGDRNGEVDEVGED 163

Query: 220 TTGQRERPTKGETVGGRPGGVDNDRGDEGD----------EGNTQRTGRCEGGMAAIRMT 71
               +E   + E V G  GG     GD GD          E   +R    +GG AA+   
Sbjct: 164 AANPKEAAPRWEAVRGDDGGGPELGGDGGDRERRRELESSEEEGRREAETDGGAAAL--- 220

Query: 70  ATAGCPRGSSSGSGRRAGEAGRP 2
                  G   GSG R G  G P
Sbjct: 221 -----GAGGGGGSGGRKGMTGGP 238

[11][TOP]
>UniRef100_C7CI29 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens DM4
           RepID=C7CI29_METED
          Length = 669

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 51/166 (30%), Positives = 59/166 (35%), Gaps = 1/166 (0%)
 Frame = -2

Query: 496 RRRRRRQRAQDAAGGHHERRRRGTGRPPQQRPAARGRPWWPPPRRPRPC*RWRRGGSPRD 317
           R  R R   +     H + R RG G P ++RP + GR   PP RR  P  R R     R 
Sbjct: 503 RPPRERSEGRPQRDFHGDSRERGEGAPRRERP-SEGR---PPERRGPPRDRPRAAEGERP 558

Query: 316 A-PAAGGAPEDTP*RAKGGTVVAGDGVKKSGGRTTGQRERPTKGETVGGRPGGVDNDRGD 140
           A P  G    D P   KG     G G  KS G   G +     G     + G     RGD
Sbjct: 559 ARPPRGAEASDRPAFRKGPAKGPGGGAGKSFGGKLGFKGGDRDGARGDFKSGAKGGPRGD 618

Query: 139 EGDEGNTQRTGRCEGGMAAIRMTATAGCPRGSSSGSGRRAGEAGRP 2
               G  +  GR  G        A  G P G      R  G   RP
Sbjct: 619 FKPGGGGRPGGRPGGRPGGKPGGAPGGRPGGGGKPGPRGGGRPSRP 664

[12][TOP]
>UniRef100_A4TCF8 Translation initiation factor IF-2 n=1 Tax=Mycobacterium gilvum
           PYR-GCK RepID=IF2_MYCGI
          Length = 930

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 50/141 (35%), Positives = 58/141 (41%), Gaps = 1/141 (0%)
 Frame = -2

Query: 427 TGRPPQQRPAARGR-PWWPPPRRPRPC*RWRRGGSPRDAPAAGGAPEDTP*RAKGGTVVA 251
           + + P +RPA R + P  P   RP P      G  P   P  G  P + P R  GG    
Sbjct: 168 SSQQPVERPAPRPQGPAGPGGPRPGP---GAGGPRPGGGPRPGATPGNMPPRPVGGPRPG 224

Query: 250 GDGVKKSGGRTTGQRERPTKGETVGGRPGGVDNDRGDEGDEGNTQRTGRCEGGMAAIRMT 71
           G G +  GG   G   RPT G    GRPGG        G  GN +  G   GG A     
Sbjct: 225 G-GPRPGGGPRPGAGPRPTPGG--AGRPGG--------GGGGNYRGGGAGGGGGAG---G 270

Query: 70  ATAGCPRGSSSGSGRRAGEAG 8
           A AG  RG   G G R G+ G
Sbjct: 271 AAAGGFRGRPGGGGGRPGQRG 291