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[1][TOP]
>UniRef100_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10
RepID=Q0AS26_MARMM
Length = 372
Score = 92.4 bits (228), Expect = 1e-17
Identities = 66/161 (40%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+EV IREGKNREVR+AL+ + L+VNRLIR +YGPFQL L++G ++ V + L DQ GHL
Sbjct: 184 LEVGIREGKNREVRKALDAVGLRVNRLIRIAYGPFQLGQLEKGEIKSVPSRVLHDQCGHL 243
Query: 181 VDI---PREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQG 351
+D+ P Q K +P R KPG K GK P ++A G
Sbjct: 244 IDMGDTPTGQAIAKPRPANRAAR---------KPGQKPD--GK----------PGQRAMG 282
Query: 352 GRRQGPPRTKR*ELSPALIADAILPRRMDAIRAQPATRRGK 474
G G P + E+ +LI DA R +DA RRGK
Sbjct: 283 G--PGQPGLPKREVDDSLIEDARKGRPLDA--KSTRARRGK 319
[2][TOP]
>UniRef100_A4WUQ7 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides ATCC 17025
RepID=A4WUQ7_RHOS5
Length = 466
Score = 92.4 bits (228), Expect = 1e-17
Identities = 69/168 (41%), Positives = 90/168 (53%), Gaps = 11/168 (6%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+ + L VNRLIR SYGPF+L LQ G VEEV K LRDQ+G +D
Sbjct: 185 VGLREGKNREIRRAMSAIGLTVNRLIRISYGPFRLNELQPGMVEEVRPKVLRDQLG--LD 242
Query: 187 IPREQDRHKRKPPK--RGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
PRE+D +PPK R + A S PG++ +K PP +A+GG +
Sbjct: 243 -PREED---GRPPKAARPPRGAGAASGRSHPGAR---------PSGSKPLPPDEARGGSK 289
Query: 361 QGPPRTKR*ELSPA---------LIADAILPRRMDAIRAQPATRRGKA 477
G PR + +P + DA + R RA+PA KA
Sbjct: 290 -GAPRGRGAGAAPKSAGPARRRDALPDAAIDARPSGPRARPAAGAAKA 336
[3][TOP]
>UniRef100_A3T0T0 Pseudouridine synthase n=1 Tax=Sulfitobacter sp. NAS-14.1
RepID=A3T0T0_9RHOB
Length = 335
Score = 90.9 bits (224), Expect = 4e-17
Identities = 61/142 (42%), Positives = 79/142 (55%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+E ++L VNRLIRTSYGPFQL L+ G VEE+ RK +RDQ+G ++
Sbjct: 195 VGLREGKNREIRRAMEAVNLSVNRLIRTSYGPFQLGELKTGEVEELKRKVVRDQLG--LE 252
Query: 187 IPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRRQG 366
I +K P R +KAR +PG R L K+ P K A G G
Sbjct: 253 IADTTGTAVKKKPAR--IIKRKARKPGEPGPGRPGLPKE--------PGDKTATGKTIPG 302
Query: 367 PPRTKR*ELSPALIADAILPRR 432
P+ + PA A PR+
Sbjct: 303 KPKPGYGKSKPARPASDPAPRK 324
[4][TOP]
>UniRef100_A3SGQ9 Pseudouridine synthase n=1 Tax=Sulfitobacter sp. EE-36
RepID=A3SGQ9_9RHOB
Length = 335
Score = 90.5 bits (223), Expect = 5e-17
Identities = 61/142 (42%), Positives = 79/142 (55%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+E ++L VNRLIRTSYGPFQL L+ G VEE+ RK +RDQ+G ++
Sbjct: 195 VGLREGKNREIRRAMEAVNLSVNRLIRTSYGPFQLGELKTGEVEELKRKVVRDQLG--LE 252
Query: 187 IPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRRQG 366
I +K P R +KAR +PG R L K+ P K A G G
Sbjct: 253 IADTTGTAIKKKPAR--IIKRKARKPGEPGPGRPGLPKE--------PGDKTATGKTIPG 302
Query: 367 PPRTKR*ELSPALIADAILPRR 432
P+ + PA A PR+
Sbjct: 303 KPKPGYGKSKPARPASDPAPRK 324
[5][TOP]
>UniRef100_B7RIZ3 Pseudouridine synthase n=1 Tax=Roseobacter sp. GAI101
RepID=B7RIZ3_9RHOB
Length = 336
Score = 88.6 bits (218), Expect = 2e-16
Identities = 58/133 (43%), Positives = 78/133 (58%), Gaps = 13/133 (9%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+E ++L VNRLIRTSYGPFQL L+ G VEE+ RK +RDQ+G ++
Sbjct: 195 VGLREGKNREIRRAMEAVNLSVNRLIRTSYGPFQLGELKPGEVEELKRKVVRDQLGIEIE 254
Query: 187 -----IPREQDRH--KRKPPKRGTHASKKARSDSKPGSK----RQVLGKQSAAQ-NAKRP 330
+++ H KRKP K G + +PG K + + GK +K P
Sbjct: 255 DNTGTAVKKKPSHIVKRKPRKPGAPGPGRPGLPKEPGEKTATGKVIPGKPKPGYGKSKAP 314
Query: 331 -PPKKAQGGRRQG 366
PP A G R+ G
Sbjct: 315 RPPSDAPGPRKFG 327
[6][TOP]
>UniRef100_B6B0L5 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium HTCC2083
RepID=B6B0L5_9RHOB
Length = 310
Score = 87.0 bits (214), Expect = 6e-16
Identities = 52/126 (41%), Positives = 70/126 (55%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V IREGKNRE+RRA+E + L VNRLIR SYGPFQL +L+ VEE+ R+ L+DQ+G L D
Sbjct: 186 VGIREGKNREIRRAMEAIQLNVNRLIRVSYGPFQLGNLKTSGVEEIRRRALKDQLG-LSD 244
Query: 187 IPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRRQG 366
E K KP +RG ++ + + P + + S + RP +
Sbjct: 245 EDLEVPGAKPKPTQRGKNSVTRGKRPPLPKGPLRGRDRFSDSDPMARPKSSGKPKSKPAN 304
Query: 367 PPRTKR 384
PR KR
Sbjct: 305 KPRPKR 310
[7][TOP]
>UniRef100_B5KAQ5 Pseudouridine synthase n=1 Tax=Octadecabacter antarcticus 238
RepID=B5KAQ5_9RHOB
Length = 328
Score = 87.0 bits (214), Expect = 6e-16
Identities = 51/127 (40%), Positives = 73/127 (57%), Gaps = 6/127 (4%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE+R+ +E + + VNRL+R SYGPFQL +L+ G VEEV ++ +RDQ+G L + P
Sbjct: 202 LREGKNREIRKLMEAMGVVVNRLLRISYGPFQLGTLKPGKVEEVKQRIVRDQMG-LRETP 260
Query: 193 ------REQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGG 354
+ ++ KR PPKRGT AS K +D + + A + P + G
Sbjct: 261 KPTMVGKAAEKGKRPPPKRGTAASAKRFTDPEKRNSDPTKRNTGAVERNSGPTSGHSAGR 320
Query: 355 RRQGPPR 375
PPR
Sbjct: 321 SAGKPPR 327
[8][TOP]
>UniRef100_A9HAG1 Pseudouridine synthase n=1 Tax=Roseobacter litoralis Och 149
RepID=A9HAG1_9RHOB
Length = 285
Score = 86.7 bits (213), Expect = 8e-16
Identities = 46/81 (56%), Positives = 56/81 (69%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRAL LDL VNRLIR SYGPFQL L+ GAVEEV RK LRDQ+G +
Sbjct: 187 VGLREGKNREIRRALAELDLSVNRLIRISYGPFQLGELKPGAVEEVRRKILRDQLGLEGE 246
Query: 187 IPREQDRHKRKPPKRGTHASK 249
+ +H KRG + ++
Sbjct: 247 VEESAPKHPDAGKKRGPNVNR 267
[9][TOP]
>UniRef100_A3K8I4 Pseudouridine synthase n=1 Tax=Sagittula stellata E-37
RepID=A3K8I4_9RHOB
Length = 341
Score = 85.9 bits (211), Expect = 1e-15
Identities = 56/142 (39%), Positives = 78/142 (54%), Gaps = 10/142 (7%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+ L L VNRLIR SYGPFQL ++ G V+EV RK LRDQ+G +D
Sbjct: 186 VGLREGKNREIRRAMADLGLSVNRLIRISYGPFQLGQMKPGEVQEVRRKILRDQLGLGLD 245
Query: 187 IPREQDRHKRKPPKRGTHASKKARSDSKP-------GSKRQVLG---KQSAAQNAKRPPP 336
E + + + T S+ A + +KP G + V G ++S + AK
Sbjct: 246 AEPEAEAKPKPGLQPRTRKSRAAPTSAKPVPARSGAGGGKSVTGGPARKSTSPGAKPAGK 305
Query: 337 KKAQGGRRQGPPRTKR*ELSPA 402
+ G R GP + K +P+
Sbjct: 306 SGPKPGGRAGPAKGKPTRSAPS 327
[10][TOP]
>UniRef100_Q5LP66 Pseudouridine synthase n=1 Tax=Ruegeria pomeroyi RepID=Q5LP66_SILPO
Length = 387
Score = 85.5 bits (210), Expect = 2e-15
Identities = 57/136 (41%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+E + VNRLIR SYGPFQL +L G VEEV R+ LRDQ+G +
Sbjct: 186 VGLREGKNREIRRAIEDIGFIVNRLIRISYGPFQLGTLAPGKVEEVRRRVLRDQLGLDGE 245
Query: 187 IPREQDRHKRKPPKRGTHASKKA------RSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQ 348
+R R KR AS A + ++PG G+ AA + P K++
Sbjct: 246 DQPTDERPARPERKRKPGASAPATPRGGTTAKARPGG--AAAGRSDAASKPRSGAPAKSR 303
Query: 349 GG-----RRQGPPRTK 381
G R PPRT+
Sbjct: 304 SGDPAKQRSGAPPRTR 319
[11][TOP]
>UniRef100_Q168J7 Pseudouridine synthase n=1 Tax=Roseobacter denitrificans OCh 114
RepID=Q168J7_ROSDO
Length = 285
Score = 85.5 bits (210), Expect = 2e-15
Identities = 54/95 (56%), Positives = 60/95 (63%), Gaps = 8/95 (8%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD-- 186
+REGKNRE+RRAL L L VNRLIR SYGPFQL L+ GAVEEV RK LRDQ+G D
Sbjct: 189 LREGKNREIRRALAELGLTVNRLIRISYGPFQLGELKSGAVEEVRRKVLRDQLGLEEDAG 248
Query: 187 ---IPREQDRHKRKPPKRGTHA---SKKARSDSKP 273
R + KR PP R T A +K AR KP
Sbjct: 249 TDPAKRLEAGRKRGPPIRRTRATAGAKPARYAKKP 283
[12][TOP]
>UniRef100_A9E1N7 Pseudouridine synthase n=1 Tax=Oceanibulbus indolifex HEL-45
RepID=A9E1N7_9RHOB
Length = 354
Score = 85.1 bits (209), Expect = 2e-15
Identities = 58/157 (36%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REG+NRE+RRA+E + L VNRLIRTSYGPFQL L+ G VEE+ RK +RDQ+G ++ P
Sbjct: 204 LREGRNREIRRAMEAVGLTVNRLIRTSYGPFQLGELKTGEVEELRRKIVRDQLGLELEDP 263
Query: 193 R----EQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
++ R+PP+R A P + + PPP++ GG+
Sbjct: 264 TGTAVKKPTAVRRPPRRKPGGFGGAGQPGMPVQRGE----------DDEPPPRRG-GGKA 312
Query: 361 QGPPRTKR*ELSPALIADAILPRRMDAIRAQPATRRG 471
+ PR K A R D A+P +R G
Sbjct: 313 KNAPRGK-----------AAAGRTADKPGARPGSRTG 338
[13][TOP]
>UniRef100_B5JB76 Pseudouridine synthase n=1 Tax=Octadecabacter antarcticus 307
RepID=B5JB76_9RHOB
Length = 308
Score = 84.7 bits (208), Expect = 3e-15
Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 6/113 (5%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE+R+ +E + + VNRL+R SYGPFQL +L+ G VEEV ++ +RDQ+G L + P
Sbjct: 200 LREGKNREIRKLMEAMGVAVNRLLRISYGPFQLGTLKPGKVEEVKQRIVRDQMG-LRETP 258
Query: 193 RE------QDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPP 333
+ ++ KR PPKRGT AS K +D +KR ++ +A +PP
Sbjct: 259 KPTMVRKGPEKGKRPPPKRGTAASAKRHTDP---AKRN--SGPTSGNSAGKPP 306
[14][TOP]
>UniRef100_A4EVL3 Pseudouridine synthase n=1 Tax=Roseobacter sp. SK209-2-6
RepID=A4EVL3_9RHOB
Length = 377
Score = 84.7 bits (208), Expect = 3e-15
Identities = 52/125 (41%), Positives = 72/125 (57%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+E + VNRL+R SYGPFQL L+ G VEE+ + LRDQ+G ++
Sbjct: 246 VGLREGKNREIRRAMEDIGYNVNRLLRVSYGPFQLGDLKPGEVEELRPRVLRDQLG--LE 303
Query: 187 IPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRRQG 366
E+ K + + A K +SD+ + GK A++N+ KA G RQG
Sbjct: 304 AETEESTPKPRAQRSRGPAPSKGKSDAVRAGAKPGRGKPLASRNSSE-GAAKAGGKPRQG 362
Query: 367 PPRTK 381
R K
Sbjct: 363 QSRKK 367
[15][TOP]
>UniRef100_C8RXP5 RNA-binding S4 domain protein n=1 Tax=Rhodobacter sp. SW2
RepID=C8RXP5_9RHOB
Length = 358
Score = 84.3 bits (207), Expect = 4e-15
Identities = 60/137 (43%), Positives = 74/137 (54%), Gaps = 16/137 (11%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+ L+L VNRLIR SYGPF+L LQ G V EV K LRDQ+G
Sbjct: 195 VGLREGKNREIRRAMFALNLTVNRLIRISYGPFRLGDLQPGEVAEVRGKVLRDQLGF--- 251
Query: 187 IPREQDRH--------KRKPPKRGTHASKKARSDSKPGSK--RQVLGKQSAAQNAKRPPP 336
PR +D +KP R A+ +KPG+K R V + A A+ P
Sbjct: 252 DPRAEDEELSTSGKPAPKKPATRTLAPRTPAKPGAKPGAKPSRGVAKPAAEAPVARAKPV 311
Query: 337 K------KAQGGRRQGP 369
K KAQ G + GP
Sbjct: 312 KPGPGWAKAQPGGKSGP 328
[16][TOP]
>UniRef100_B9R341 Pseudouridine synthase n=1 Tax=Labrenzia alexandrii DFL-11
RepID=B9R341_9RHOB
Length = 498
Score = 84.3 bits (207), Expect = 4e-15
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 14/139 (10%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGH--- 177
V +REGKNREV+R LE L + VNRLIR SYGPFQL+ L G V E+ + LRDQ+G
Sbjct: 236 VGLREGKNREVKRVLEHLGMSVNRLIRLSYGPFQLMDLAEGDVREIRGRVLRDQLGDALA 295
Query: 178 ----------LVDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKR 327
+ +P++++ KR P+ G+ S + K + R+ + A+
Sbjct: 296 EEAGADFDAPIFHMPKQEEEKKRPGPRGGSRDSSSEKGQGKWLTAREGKSATDRKKAARS 355
Query: 328 PPPKKAQGGRR-QGPPRTK 381
QG RR +GP R K
Sbjct: 356 DDGGPKQGKRRNEGPRREK 374
[17][TOP]
>UniRef100_A3XFD0 Pseudouridine synthase n=1 Tax=Roseobacter sp. MED193
RepID=A3XFD0_9RHOB
Length = 394
Score = 83.2 bits (204), Expect = 8e-15
Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 13/136 (9%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG----HL 180
+REGKNRE+RRALE + VNRL+R SYGPFQL SL+ G VEE+ + +RDQ+G +
Sbjct: 220 LREGKNREIRRALEDIGFNVNRLLRLSYGPFQLGSLKLGEVEELRPRVVRDQLGLEAEDM 279
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGK-------QSAAQNAKRPPPK 339
+ P + R K G S K S + P S GK + A ++ RP K
Sbjct: 280 EETPAARPTRGRPGAKPGQKPSGKPGSKTAPKSGGMTFGKPKGKPTGRPADESTGRPTGK 339
Query: 340 KA--QGGRRQGPPRTK 381
+ GG+ G P T+
Sbjct: 340 SSGKPGGKPSGKPGTR 355
[18][TOP]
>UniRef100_A3TYQ5 Pseudouridine synthase n=1 Tax=Oceanicola batsensis HTCC2597
RepID=A3TYQ5_9RHOB
Length = 331
Score = 82.8 bits (203), Expect = 1e-14
Identities = 56/139 (40%), Positives = 74/139 (53%), Gaps = 13/139 (9%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+E++ L VNRLIR SYGPFQL L GAVEEV R+ +RDQ+G L D
Sbjct: 189 VGLREGKNREIRRAMESIGLSVNRLIRISYGPFQLGPLAPGAVEEVRRRVMRDQLG-LDD 247
Query: 187 IPREQDRHKRKPPKRGTHASKKARSD--SKPGSKRQVLGK-----------QSAAQNAKR 327
+ R KR + T K R ++ G K G+ ++ + +
Sbjct: 248 AEADAPRPKRSRAGQRTGPETKTRDKVRARTGGKTSGGGRTPDAPVPEAPWETRPKPRGK 307
Query: 328 PPPKKAQGGRRQGPPRTKR 384
PP G R P T+R
Sbjct: 308 PPGPDGSGKARPRPHVTRR 326
[19][TOP]
>UniRef100_B7QXE0 Pseudouridine synthase n=1 Tax=Ruegeria sp. R11 RepID=B7QXE0_9RHOB
Length = 414
Score = 82.4 bits (202), Expect = 1e-14
Identities = 56/137 (40%), Positives = 72/137 (52%), Gaps = 15/137 (10%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+E + VNRL+R SYGPFQL L+ G VEE+ + +RDQ+G L
Sbjct: 223 VGLREGKNREIRRAMEDIGFSVNRLLRLSYGPFQLGQLKPGEVEELRPRVVRDQLG-LAA 281
Query: 187 IPREQDRHKR----------KPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAK---- 324
EQD KR KP R +DS+ G+ R G+ +A NAK
Sbjct: 282 PEEEQDSPKRPGTRQRPMRGKPGTRPGSGQSDRGTDSRAGAGR--TGRPGSAPNAKGTGK 339
Query: 325 -RPPPKKAQGGRRQGPP 372
P GG+ G P
Sbjct: 340 GTGKPLSKAGGKSMGKP 356
[20][TOP]
>UniRef100_A3W2L8 Pseudouridine synthase n=1 Tax=Roseovarius sp. 217
RepID=A3W2L8_9RHOB
Length = 269
Score = 82.4 bits (202), Expect = 1e-14
Identities = 43/77 (55%), Positives = 54/77 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+ V IREGKNRE+RRA+E + L VNRLIR SYGPFQL L+ GAVEE+ + LRDQ+G
Sbjct: 190 ITVSIREGKNREIRRAMEAVGLVVNRLIRLSYGPFQLGQLKPGAVEEIRPRVLRDQLGMK 249
Query: 181 VDIPREQDRHKRKPPKR 231
+ EQ + R P+R
Sbjct: 250 EEPEAEQPKPARPKPQR 266
[21][TOP]
>UniRef100_B9KPF2 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides KD131
RepID=B9KPF2_RHOSK
Length = 491
Score = 81.6 bits (200), Expect = 2e-14
Identities = 54/126 (42%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+ L L VNRLIR SYGPF+L L+ G VEEV K LRDQ+G
Sbjct: 185 VGLREGKNREIRRAMSALGLTVNRLIRVSYGPFRLNELEPGMVEEVRPKILRDQLGLDPH 244
Query: 187 IPREQDRHK-RKP-----PKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQ 348
E K RKP P R A+++AR++ S++ + AA P + A+
Sbjct: 245 ADGEARPAKGRKPEGAARPARSESAARRARAEGGARSEKPARSPRGAAAEG---PTRPAR 301
Query: 349 GGRRQG 366
G +G
Sbjct: 302 GAGSEG 307
[22][TOP]
>UniRef100_A9EKS8 Pseudouridine synthase n=1 Tax=Phaeobacter gallaeciensis 2.10
RepID=A9EKS8_9RHOB
Length = 447
Score = 81.6 bits (200), Expect = 2e-14
Identities = 54/135 (40%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE+RRA+E + VNRL+R SYGPFQL +L+ G VEE+ + +RDQ+G
Sbjct: 232 LREGKNREIRRAIEDIGFTVNRLLRLSYGPFQLGNLKPGEVEELRSRVVRDQLGLTAPET 291
Query: 193 REQDRHKR---------KP-PKRGTHASKKARSDSKPGSK--RQVLGKQSAAQNAKRPPP 336
E ++ KR KP PK G A +S SKPG K + G+ + + P
Sbjct: 292 EEDEKPKRPVRQRPGAGKPGPKPG--AKPDFKSGSKPGGKPGGKPSGRSFGSSDRSSEKP 349
Query: 337 KKAQGGRRQGPPRTK 381
G R G P K
Sbjct: 350 GDRSGARPAGKPGGK 364
[23][TOP]
>UniRef100_Q3J464 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides 2.4.1
RepID=Q3J464_RHOS4
Length = 508
Score = 81.3 bits (199), Expect = 3e-14
Identities = 56/132 (42%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+ L L VNRLIR SYGPF+L L+ G VEEV K LRDQ+G
Sbjct: 185 VGLREGKNREIRRAMSALGLTVNRLIRVSYGPFRLNELEPGMVEEVRPKILRDQLGLDPH 244
Query: 187 IPRE-QDRHKRKP-----PKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQ 348
E + RKP P R A++ AR++ G R + +A PP+
Sbjct: 245 ADGEARPARGRKPEGAARPARSEGAARPARAE---GGARPARAEGAARSERTARPPR--- 298
Query: 349 GGRRQGPPRTKR 384
G +GP R R
Sbjct: 299 GAAAEGPARAGR 310
[24][TOP]
>UniRef100_B1ZE31 Pseudouridine synthase n=1 Tax=Methylobacterium populi BJ001
RepID=B1ZE31_METPB
Length = 577
Score = 81.3 bits (199), Expect = 3e-14
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNREV+R LE L L VNRLIR S+GPFQL L+ G VEE+ K L++Q+G +
Sbjct: 205 LREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEIRTKVLKEQLGKSLAEQ 264
Query: 184 -----DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQ 348
+ P + PK+ A++ R+++ G G+Q A + P A+
Sbjct: 265 AGVDFESPVREAIAPFGSPKKAARAAQSPRAEAPAGRG----GRQGAHDEGRSEPRSGAR 320
Query: 349 GGRRQGPPR 375
GG PPR
Sbjct: 321 GGAAGRPPR 329
[25][TOP]
>UniRef100_A1B9L2 Pseudouridine synthase n=1 Tax=Paracoccus denitrificans PD1222
RepID=A1B9L2_PARDP
Length = 457
Score = 80.9 bits (198), Expect = 4e-14
Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V IREG+NRE+RRA+ + L VNRLIR YGPF+L L+ V EV RK LRDQ+G L
Sbjct: 192 VGIREGRNREIRRAMAHVGLIVNRLIRIGYGPFKLTGLEENEVREVKRKVLRDQLGGL-- 249
Query: 187 IPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNA---KRPPPKKAQGGR 357
+ E + R +RG A+K A D++P R G++ A+ ++P ++ +G R
Sbjct: 250 LTGETEEKPRSFRERG--AAKPAEGDARPRKPRDEGGRKPFARREDGDRKPFARREEGDR 307
Query: 358 R 360
+
Sbjct: 308 K 308
[26][TOP]
>UniRef100_C5SKU3 Pseudouridine synthase n=1 Tax=Asticcacaulis excentricus CB 48
RepID=C5SKU3_9CAUL
Length = 489
Score = 80.5 bits (197), Expect = 5e-14
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+ V + EGKNREVR+ L++L LKVNRLIR +YGPFQL ++ G VEE+G + +R+ +G
Sbjct: 226 ITVSLNEGKNREVRKVLDSLGLKVNRLIRLAYGPFQLGDIEPGEVEEIGPRVVRELLGDK 285
Query: 181 VD---IPREQDRHKRKPPK-RGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRP 330
+D +P E + R P + R T R+ + G R + + +RP
Sbjct: 286 IDPRNLPSENETQTRTPMRLRRTDGEGAPRTGRRGGGDRFASKSEGREERRERP 339
[27][TOP]
>UniRef100_Q13BM8 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisB5
RepID=Q13BM8_RHOPS
Length = 795
Score = 80.1 bits (196), Expect = 7e-14
Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
IREGKNREVR L L L+VNRLIR SYGPFQLL ++ G VEEV + LR+Q+G +
Sbjct: 655 IREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLEIEEGQVEEVKTRVLREQLGEKIIKL 714
Query: 184 ---DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGG 354
D R P+ G K ++ P K++ + K+ A ++ K K + G
Sbjct: 715 AEADFGGPSPSETRPKPRPG----KPVAAEDGPAPKKKAVVKRGAVEDRKGRKVKVERTG 770
Query: 355 R-----RQGPPRTKR*ELSPA 402
+GP R + PA
Sbjct: 771 SGDRDPSRGPARRYHGKREPA 791
[28][TOP]
>UniRef100_Q2CAZ2 Pseudouridine synthase n=1 Tax=Oceanicola granulosus HTCC2516
RepID=Q2CAZ2_9RHOB
Length = 279
Score = 80.1 bits (196), Expect = 7e-14
Identities = 46/90 (51%), Positives = 60/90 (66%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+E + +KVNRLIR SYGPFQL +L G VEEV K LRDQ+G L
Sbjct: 185 VALREGKNREIRRAMEAIGIKVNRLIRISYGPFQLGNLAAGEVEEVRPKVLRDQLG-LDA 243
Query: 187 IPREQDRHKRKPPKRGTHASKKARSDSKPG 276
P+ Q +R+ R + + R ++PG
Sbjct: 244 RPKPQ---RRRAAGRDDGDAARPRGPARPG 270
[29][TOP]
>UniRef100_Q89DE4 Pseudouridine synthase n=1 Tax=Bradyrhizobium japonicum
RepID=Q89DE4_BRAJA
Length = 696
Score = 79.7 bits (195), Expect = 9e-14
Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
IREGKNREVR L L+VNRLIR SYGPFQL + G VEE+ + LR+Q+G V
Sbjct: 556 IREGKNREVRNVCAHLGLEVNRLIRVSYGPFQLGEVPEGQVEEIKSRVLREQLGDKVIEK 615
Query: 184 -----DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQ 348
D+P++ P ASK+A + + G R+VL +++ ++ A+ +A
Sbjct: 616 SGAQFDVPQKAAATDDGAPHEKKPASKRAVINDRKG--RRVLVQRTGSEEARERNEAEAS 673
Query: 349 GGRRQGPPR 375
G GPPR
Sbjct: 674 G---YGPPR 679
[30][TOP]
>UniRef100_A6FPK4 Pseudouridine synthase n=1 Tax=Roseobacter sp. AzwK-3b
RepID=A6FPK4_9RHOB
Length = 263
Score = 79.7 bits (195), Expect = 9e-14
Identities = 46/89 (51%), Positives = 57/89 (64%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
V V IREG+NREVRRA+E + L VNRLIR SYGPFQL +L+ GAVEE+ + LRDQ+G
Sbjct: 184 VTVGIREGRNREVRRAMEAVGLSVNRLIRVSYGPFQLGTLKPGAVEEIRPRILRDQLG-- 241
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDS 267
+ + P K G A K+ R S
Sbjct: 242 -------ETSEEAPKKPGKPAPKRTRRRS 263
[31][TOP]
>UniRef100_A6DUZ8 Pseudouridine synthase n=1 Tax=Roseovarius sp. TM1035
RepID=A6DUZ8_9RHOB
Length = 268
Score = 79.7 bits (195), Expect = 9e-14
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+ V IREGKNRE+RRA+E + L VNRLIR SYGPFQL L+ GAVEE+ + +RDQ+G
Sbjct: 189 ITVAIREGKNREIRRAMEAVGLVVNRLIRLSYGPFQLGQLKPGAVEEIRPRVMRDQLG-- 246
Query: 181 VDIPREQDRHKRKPPK 228
+P+E + KP +
Sbjct: 247 --MPQEPEAEPAKPAR 260
[32][TOP]
>UniRef100_Q2J0X9 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris HaA2
RepID=Q2J0X9_RHOP2
Length = 784
Score = 79.3 bits (194), Expect = 1e-13
Identities = 55/142 (38%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
IREGKNREVR L L L+VNRLIR SYGPFQLL ++ G VEEV + LR+Q+G +
Sbjct: 642 IREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLEIEEGEVEEVKTRVLREQLGDKIIQL 701
Query: 184 ---DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPK---KA 345
D R P+ G A +++ P K++ K+ A ++ K K
Sbjct: 702 AGADFGGPSPSEARPKPRPGRPV---AAAEAAPAPKKKAPTKRGAVEDRKGRKVKVERTG 758
Query: 346 QGGRR---QGPPRTKR*ELSPA 402
GG R +GP R + PA
Sbjct: 759 SGGDRGLTRGPARRYHGKREPA 780
[33][TOP]
>UniRef100_Q28T28 Pseudouridine synthase n=1 Tax=Jannaschia sp. CCS1
RepID=Q28T28_JANSC
Length = 296
Score = 79.3 bits (194), Expect = 1e-13
Identities = 52/119 (43%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+ V +REGKNRE+RRA+ L +VNRLIR SYGPF+L L+ G VEEV + LRDQ+G L
Sbjct: 180 ITVGLREGKNREIRRAMAELGFEVNRLIRVSYGPFRLGELKPGEVEEVRPRVLRDQLG-L 238
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAA-----QNAKRPPPKK 342
K KP +G +KA K G + GK S A + + RPP +K
Sbjct: 239 EAATEGHAEPKAKPAFKGKR--RKAPDARKSGERLAPRGKPSGAVRSDRRGSGRPPRRK 295
[34][TOP]
>UniRef100_A3PI85 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides ATCC 17029
RepID=A3PI85_RHOS1
Length = 489
Score = 79.3 bits (194), Expect = 1e-13
Identities = 52/123 (42%), Positives = 64/123 (52%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+ L L VNRLIR SYGPF+L L+ G VEEV K LRDQ+G
Sbjct: 185 VGLREGKNREIRRAMSALGLTVNRLIRVSYGPFRLNELEPGMVEEVRPKILRDQLG---- 240
Query: 187 IPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRRQG 366
+ D R P RG AR++ S+R + AA P + A G
Sbjct: 241 LDPHADGEAR--PARGRKPEGAARAEGAARSERTARPPRGAAAEGPTRPARAAGSEGSAG 298
Query: 367 PPR 375
R
Sbjct: 299 ATR 301
[35][TOP]
>UniRef100_A9G121 Pseudouridine synthase n=1 Tax=Phaeobacter gallaeciensis BS107
RepID=A9G121_9RHOB
Length = 447
Score = 79.3 bits (194), Expect = 1e-13
Identities = 50/134 (37%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE+RRA+E + VNRL+R SYGPFQL +L+ G VEE+ + +RDQ+G L
Sbjct: 232 LREGKNREIRRAIEDIGFTVNRLLRLSYGPFQLGNLKPGEVEELRPRVVRDQLG-LAAPE 290
Query: 193 REQDRHKRKPPKRGTHASKKA---------RSDSKPGSK--RQVLGKQSAAQNAKRPPPK 339
E+D ++P ++ A K +S KPG K + G+ + + P
Sbjct: 291 TEEDEKPKRPVRQRPGAGKPGTKPGAKPDFKSGGKPGGKPSGKPSGRSFGSADRSSEKPG 350
Query: 340 KAQGGRRQGPPRTK 381
G R G P K
Sbjct: 351 DRSGARPAGKPGGK 364
[36][TOP]
>UniRef100_Q6NAL9 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris
RepID=Q6NAL9_RHOPA
Length = 731
Score = 79.0 bits (193), Expect = 2e-13
Identities = 56/136 (41%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
IREGKNREVR L L L+VNRLIR SYGPFQLL L G V+EV + LRDQ+G V
Sbjct: 584 IREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLELGEGEVDEVKTRVLRDQLGEKVIAL 643
Query: 184 ---DIPREQDRHKRKPPKRG--THASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPK--- 339
D + P+ G A + A +D+ P K+ + K+ A ++ K K
Sbjct: 644 AGCDFAGPSPSETKPKPRAGKAVSAEEWAVADAAPAPKKTIT-KRGAVEDRKGRKVKVER 702
Query: 340 -KAQGGRR---QGPPR 375
++GG R +GP R
Sbjct: 703 TASEGGDRPLSRGPAR 718
[37][TOP]
>UniRef100_B3QIH2 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris TIE-1
RepID=B3QIH2_RHOPT
Length = 736
Score = 79.0 bits (193), Expect = 2e-13
Identities = 56/136 (41%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
IREGKNREVR L L L+VNRLIR SYGPFQLL L G V+EV + LRDQ+G V
Sbjct: 589 IREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLELGEGEVDEVKTRVLRDQLGEKVIAL 648
Query: 184 ---DIPREQDRHKRKPPKRG--THASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPK--- 339
D + P+ G A + A +D+ P K+ + K+ A ++ K K
Sbjct: 649 AGCDFAGPSPSETKPKPRAGKAVSAEEWAVADAAPAPKKTIT-KRGAVEDRKGRKVKVER 707
Query: 340 -KAQGGRR---QGPPR 375
++GG R +GP R
Sbjct: 708 TASEGGDRPLSRGPAR 723
[38][TOP]
>UniRef100_Q1GFA6 Pseudouridine synthase n=1 Tax=Ruegeria sp. TM1040
RepID=Q1GFA6_SILST
Length = 422
Score = 78.6 bits (192), Expect = 2e-13
Identities = 53/118 (44%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE+RRA+E + VNRL+R SYGPFQL +L+ G VEE+ + +RDQ+G + P
Sbjct: 241 LREGKNREIRRAMEEVGYPVNRLLRISYGPFQLGTLKEGEVEELRPRVVRDQLG--LAAP 298
Query: 193 REQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPK---KAQGGR 357
K+KP + G R PG+K GK A NA RP K KA GR
Sbjct: 299 EGDGEAKKKPTRPG-------RGPRNPGAK--TAGKGIGAPNA-RPTGKGAVKAPEGR 346
[39][TOP]
>UniRef100_B4RA72 Pseudouridine synthase n=1 Tax=Phenylobacterium zucineum HLK1
RepID=B4RA72_PHEZH
Length = 521
Score = 78.6 bits (192), Expect = 2e-13
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQV-GHL- 180
V ++EGKNREVRR LE L LKVNRLIR SYGPF L +L G +EEVG + +R+Q+ GH+
Sbjct: 332 VTLQEGKNREVRRVLEALGLKVNRLIRLSYGPFALGTLDVGEIEEVGPRVIREQLEGHIP 391
Query: 181 -VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQS-----AAQNAKRPPPKK 342
++P+ R P ++ A ++R + + K++ A AK P K
Sbjct: 392 PENMPKGDRPQYRSPARKSRRAQAESRQAELVPPRPEAPAKKAYKAGWAKPKAKAKPHAK 451
Query: 343 AQG 351
G
Sbjct: 452 TAG 454
[40][TOP]
>UniRef100_A8LJ28 Pseudouridine synthase n=1 Tax=Dinoroseobacter shibae DFL 12
RepID=A8LJ28_DINSH
Length = 322
Score = 78.6 bits (192), Expect = 2e-13
Identities = 54/137 (39%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REG+NRE+RRA+ L L VNRLIR SYGPF+L L+ G VEE+ + LR+Q+G ++ P
Sbjct: 189 LREGRNREIRRAMGALGLVVNRLIRISYGPFRLGELKPGEVEEIKGRILREQLG--LESP 246
Query: 193 REQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAK-----------RPPPK 339
+ PKRG A KP GK S A NA+ +P PK
Sbjct: 247 EPPVGTAQARPKRGPGRKPGATPGGKP------TGKPSRAPNARPGAKPGGKPGAKPDPK 300
Query: 340 ---KAQGGRRQGPPRTK 381
+A RR+ P R +
Sbjct: 301 PGARAGSARRKAPARPR 317
[41][TOP]
>UniRef100_A5ECL6 Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. BTAi1
RepID=A5ECL6_BRASB
Length = 690
Score = 78.6 bits (192), Expect = 2e-13
Identities = 57/139 (41%), Positives = 72/139 (51%), Gaps = 16/139 (11%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V IREGKNREVR L L L+VNRLIR SYGPFQLL L G V+EV + LR+Q+G V
Sbjct: 551 VAIREGKNREVRNVLAYLGLEVNRLIRVSYGPFQLLELPEGEVQEVKTRVLREQLGEKVI 610
Query: 187 IPREQD-----RHKRKP-------PKRGTHASKKARS--DSKPGSKRQVLGKQSAAQNAK 324
D + R+P PKR A +K R + GS+ + + A
Sbjct: 611 AQSGADLGPAGKGNREPLPDPKPKPKREVVADRKGRRVLVQRTGSE-EARARHEAEARFP 669
Query: 325 RPP--PKKAQGGRRQGPPR 375
PP PK+ G+R P+
Sbjct: 670 GPPRRPKRGYHGKRDITPQ 688
[42][TOP]
>UniRef100_Q21AV9 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisB18
RepID=Q21AV9_RHOPB
Length = 743
Score = 78.2 bits (191), Expect = 3e-13
Identities = 57/141 (40%), Positives = 73/141 (51%), Gaps = 20/141 (14%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
IREGKNREVR L L L+VNRLIR SYGPFQL L+ G VEEV + LR+Q+G +
Sbjct: 602 IREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLGELEEGQVEEVKTRVLREQLGEKIAAA 661
Query: 184 -------DIPREQDRH------KRKPPKRGTHASKKARS--DSKPGSKRQVLGKQSAAQN 318
IP + D K+ KRGT +K R + GS+ + + A N
Sbjct: 662 SGADFARQIPSKGDVDLDPVVVKKPVYKRGTVEDRKGRRVLVQRTGSE-EARARNEAEAN 720
Query: 319 AKRPPPKKAQG--GRRQGPPR 375
PP + +G G+R PR
Sbjct: 721 GYGPPRRPTRGYKGKRDLKPR 741
[43][TOP]
>UniRef100_Q07T48 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisA53
RepID=Q07T48_RHOP5
Length = 787
Score = 78.2 bits (191), Expect = 3e-13
Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 19/140 (13%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
IREGKNREVR L L L+VNRLIR SYGPFQL ++ G VEEV + LR+Q+G + +
Sbjct: 646 IREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLGEIEEGQVEEVKTRVLREQLGEKIALA 705
Query: 193 REQDRHKRKPPKRGTHAS----KK---ARSDSKPGSKRQVLGKQSAAQNAKR-------- 327
+ ++ P K T KK RS + R+VL ++S ++ A+
Sbjct: 706 AGANFARQIPSKGDTDLDPVVVKKPVLKRSTVEDRKGRRVLVQRSGSEEARERNELEAAG 765
Query: 328 --PP--PKKAQGGRRQGPPR 375
PP PK+ G+R PR
Sbjct: 766 FGPPKRPKRGYKGKRDLAPR 785
[44][TOP]
>UniRef100_A4Z0Q7 Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. ORS278
RepID=A4Z0Q7_BRASO
Length = 683
Score = 78.2 bits (191), Expect = 3e-13
Identities = 57/139 (41%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV- 183
V IREGKNREVR L L L+VNRLIR SYGPFQLL L G V+EV + LR+Q+G V
Sbjct: 543 VAIREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLELPEGEVQEVKTRVLREQLGEKVI 602
Query: 184 -----------DIPREQDRHKRKPPKRGTHASKKARS--DSKPGSKRQVLGKQSAAQNAK 324
RE + PKR A +K R + GS+ + + A
Sbjct: 603 AQSGADLGPAGSSNREPLPDPKPKPKREIVADRKGRRVLVQRTGSE-EARERHEAEARFP 661
Query: 325 RPP--PKKAQGGRRQGPPR 375
PP PK+ G+R PR
Sbjct: 662 GPPRRPKRGYHGKRDISPR 680
[45][TOP]
>UniRef100_A3VHQ4 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium HTCC2654
RepID=A3VHQ4_9RHOB
Length = 293
Score = 78.2 bits (191), Expect = 3e-13
Identities = 41/80 (51%), Positives = 56/80 (70%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE+RRA+E + L VNRLIR SYGPF+L L+ GAVEEV + LRDQ+G ++ P
Sbjct: 215 LREGKNREIRRAMEAVGLTVNRLIRISYGPFRLGELKAGAVEEVKGRVLRDQLG--LEAP 272
Query: 193 REQDRHKRKPPKRGTHASKK 252
++ +K P R ++K
Sbjct: 273 KDPTGTAKKTPVRRRKPTRK 292
[46][TOP]
>UniRef100_Q2VZP5 Pseudouridine synthase n=1 Tax=Magnetospirillum magneticum AMB-1
RepID=Q2VZP5_MAGSA
Length = 348
Score = 77.8 bits (190), Expect = 4e-13
Identities = 49/130 (37%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+ V +REGKNRE+RR +E L V+RLIR SYGPFQL +L+ GA +EV K LR+Q+G
Sbjct: 227 LSVSLREGKNREIRRVMEYLGWPVSRLIRVSYGPFQLGTLEEGAADEVAGKVLREQMGEG 286
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSK--RQVLGKQSAAQNAKRPPPKKAQGG 354
+ + PK T ++ + + + +K +Q L + A +AK+ P +A
Sbjct: 287 KAVLK---------PKAETKSAGEREKEQRVAAKARKQKLAEDKRAASAKKDKPYEA--- 334
Query: 355 RRQGPPRTKR 384
R+ G P R
Sbjct: 335 RQAGKPDAHR 344
[47][TOP]
>UniRef100_B7L142 Pseudouridine synthase n=1 Tax=Methylobacterium chloromethanicum
CM4 RepID=B7L142_METC4
Length = 674
Score = 77.8 bits (190), Expect = 4e-13
Identities = 51/129 (39%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNREV+R LE L L VNRLIR S+GPFQL L+ G VEE+ K L+DQ+G +
Sbjct: 201 LREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEIRTKVLKDQLGKNLAEQ 260
Query: 184 -----DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQ 348
+ P + PK+ T A++ A P + G+Q A P ++
Sbjct: 261 AGVDFESPVRETIAPFGSPKKATRATQAA-----PAGR----GRQGARDEGASEPRSGSR 311
Query: 349 GGRRQGPPR 375
GG PPR
Sbjct: 312 GGSAGRPPR 320
[48][TOP]
>UniRef100_B6B8E0 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium Y4I
RepID=B6B8E0_9RHOB
Length = 355
Score = 77.8 bits (190), Expect = 4e-13
Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG--HL 180
V +REGKNRE+RRA+E + VNRL+R SYGPFQL +L+ G VEE+ + +RDQ+G
Sbjct: 214 VGLREGKNREIRRAMEDIGFSVNRLLRVSYGPFQLGNLKPGEVEELRPRVVRDQLGLAEE 273
Query: 181 VDIPREQDRHKRKPPKRGTHASKKA-RSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGR 357
+IP + R G K A + KP K GKQ+A + K+ P + G
Sbjct: 274 EEIPAARPTRARGGKPAGKPMGKPAGKPMGKPAGK--PAGKQAAQPSGKQGNPGRTAG-- 329
Query: 358 RQGPP 372
+ PP
Sbjct: 330 -KAPP 333
[49][TOP]
>UniRef100_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silvestris BL2
RepID=B8ETE9_METSB
Length = 676
Score = 77.4 bits (189), Expect = 5e-13
Identities = 52/127 (40%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG------ 174
+REGKNRE++R LE L L+VNRLIR SYGPFQL L+ G VEEV + LRDQ+G
Sbjct: 207 LREGKNREIKRVLEHLGLEVNRLIRLSYGPFQLADLEEGKVEEVRTRVLRDQLGAALAEA 266
Query: 175 HLVDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRP-----PPK 339
VD PP+ + +S L Q A ++ +RP P +
Sbjct: 267 AAVDFVGPAGDALTPPPEEPAPRPPRQKS----------LRNQKAFRDEERPRRDSGPFR 316
Query: 340 KAQGGRR 360
KA+GG R
Sbjct: 317 KAEGGGR 323
[50][TOP]
>UniRef100_B1M661 Pseudouridine synthase n=1 Tax=Methylobacterium radiotolerans JCM
2831 RepID=B1M661_METRJ
Length = 601
Score = 77.4 bits (189), Expect = 5e-13
Identities = 62/160 (38%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--D 186
+REGKNREV+R LE L L VNRLIR S+GPFQL L+ G VEEV + L+DQ+G +
Sbjct: 265 LREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEVRTRVLKDQLGKSLAEQ 324
Query: 187 IPREQDRHKRKP--PKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
+ D R+P P GT + + ++P R ++AA+ A P P+ + GG
Sbjct: 325 AGVDFDSPVREPIAPFGGTRPADRDAKSAQPAPAR-----RNAARPA--PAPRVSTGGAG 377
Query: 361 QGPPRTKR*ELSPALIADAILPRR-MDAIRAQ-PATRRGK 474
GP + + A +PRR D AQ A RG+
Sbjct: 378 PGPRSSTWRDEDAAKPRGTRVPRRGADPRTAQAAAAERGR 417
[51][TOP]
>UniRef100_A3V3G8 Pseudouridine synthase n=1 Tax=Loktanella vestfoldensis SKA53
RepID=A3V3G8_9RHOB
Length = 272
Score = 77.4 bits (189), Expect = 5e-13
Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+E + + VNRLIR SYGPFQL +L+ GAVEEV + +RDQ+G L D
Sbjct: 186 VSLREGKNREIRRAMEAIGVTVNRLIRVSYGPFQLGNLEAGAVEEVKGRVVRDQLG-LSD 244
Query: 187 IPREQDRHK----RKPPKRGTHASKK 252
+D K RKP R K+
Sbjct: 245 KDLGKDSAKPTRVRKPVNRPVTGKKR 270
[52][TOP]
>UniRef100_D0D002 Ribosomal large subunit pseudouridine synthase B n=1
Tax=Citreicella sp. SE45 RepID=D0D002_9RHOB
Length = 316
Score = 76.6 bits (187), Expect = 8e-13
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG-HLVDI 189
+REGKNRE+RRA+ + L VNRLIR SYGPFQL L++G V+EV + +RDQ+G
Sbjct: 234 LREGKNREIRRAMTDIGLTVNRLIRVSYGPFQLGQLKQGEVQEVRSRVVRDQLGLEGAKS 293
Query: 190 PREQDRHKRKPPKRGTHASKKAR 258
R Q +RKP G S K R
Sbjct: 294 NRPQPTRRRKPAPDGAKQSPKRR 316
[53][TOP]
>UniRef100_Q11L93 Pseudouridine synthase n=1 Tax=Chelativorans sp. BNC1
RepID=Q11L93_MESSB
Length = 466
Score = 76.3 bits (186), Expect = 1e-12
Identities = 57/151 (37%), Positives = 75/151 (49%), Gaps = 27/151 (17%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGH----- 177
+REGKNREV+ L L L+V RLIR SYGPFQL L GAV EV + LRDQ+G
Sbjct: 228 LREGKNREVKNVLGALGLEVTRLIRVSYGPFQLGDLPEGAVLEVKGRTLRDQLGERLIEQ 287
Query: 178 ------------LVDIPREQDRHKRKPPKRGTHASKKA-RSDSKPGSKRQVL-GKQSAAQ 315
+ P +R K + KR T + A R + KP ++R+ K A+
Sbjct: 288 AGADFEAPIAIPFANKPVRAERRKPEEEKRKTGLEENAGRQERKPANRRKSREEKHEEAR 347
Query: 316 N---AKRPPPKKAQG-----GRRQGPPRTKR 384
+ KRP K +G G+ Q PPR +
Sbjct: 348 DRLQTKRPDDFKGKGSAAHKGKDQRPPRISK 378
[54][TOP]
>UniRef100_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica
ATCC 9039 RepID=B2IHU4_BEII9
Length = 528
Score = 76.3 bits (186), Expect = 1e-12
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL---- 180
+REGKNREV+R LE + L+VNRLIR S+GPFQL L G V EV + LRDQ+G
Sbjct: 272 LREGKNREVKRVLEQIGLEVNRLIRLSFGPFQLGDLPEGDVTEVRTRVLRDQLGPSLAAA 331
Query: 181 --VDIPR-EQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQG 351
VD R ++D + P+R K R++ K +K + +++ + P++ +
Sbjct: 332 AGVDWTRHDEDAAEPAAPERARKTPSKTRTEGKSVTKSHGAAPRPSSRTFTKDKPREDEH 391
Query: 352 GRRQGPP 372
R P
Sbjct: 392 PARTAKP 398
[55][TOP]
>UniRef100_A0NV51 Pseudouridine synthase n=1 Tax=Labrenzia aggregata IAM 12614
RepID=A0NV51_9RHOB
Length = 520
Score = 76.3 bits (186), Expect = 1e-12
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNREV+R LE L L VNRLIR SYGPFQL+ L G V E+ + LRDQ+G +
Sbjct: 280 VGLREGKNREVKRVLEHLGLAVNRLIRLSYGPFQLMDLPEGDVREIRGRVLRDQLGDALA 339
Query: 187 IPREQD-----RHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQG 351
D H KP A K R S+ G R+ + ++ K +G
Sbjct: 340 EEAGADFDAPIFHAPKPEAEKKPAGAK-RGGSRDGGNREGRDRDGGGRDGGGRDGGKREG 398
Query: 352 GR------RQGPPRTKR 384
G+ R+G T R
Sbjct: 399 GQGRWMTAREGRSETDR 415
[56][TOP]
>UniRef100_C9CWE7 Pseudouridine synthase, Rsu n=1 Tax=Silicibacter sp. TrichCH4B
RepID=C9CWE7_9RHOB
Length = 410
Score = 75.5 bits (184), Expect = 2e-12
Identities = 51/127 (40%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE+RRA+E + VNRL+R SYGPFQL +L+ G VEE+ + +RDQ+G + P
Sbjct: 241 LREGKNREIRRAMEEVGYPVNRLLRISYGPFQLGTLKEGEVEELRPRVVRDQLG--LAAP 298
Query: 193 REQDRHKRKP--PKRGTH---ASKKARSDSKPGS--KRQVLGKQSAAQNAKRPPPKKAQG 351
K+KP P RG + A+ K GS K + +GK + + K K G
Sbjct: 299 EGDGEAKKKPTRPGRGPRNPGGTPGAQPTGKGGSAPKGRSIGKGAGKGSGKPFEGKTFSG 358
Query: 352 GRRQGPP 372
G P
Sbjct: 359 KASAGKP 365
[57][TOP]
>UniRef100_A4EIU3 Pseudouridine synthase n=1 Tax=Roseobacter sp. CCS2
RepID=A4EIU3_9RHOB
Length = 267
Score = 75.5 bits (184), Expect = 2e-12
Identities = 39/83 (46%), Positives = 56/83 (67%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RRA+ + + VNRLIR SYGPFQL +L++G VEE+ ++ +RDQ+G
Sbjct: 187 VSLREGKNREIRRAMGEIGVTVNRLIRVSYGPFQLAALKQGEVEELKQRVVRDQLG---I 243
Query: 187 IPREQDRHKRKPPKRGTHASKKA 255
+ + RKP R T K++
Sbjct: 244 SGKPTPKRVRKPVNRPTRGKKRS 266
[58][TOP]
>UniRef100_D0CW09 Ribosomal large subunit pseudouridine synthase B n=1
Tax=Silicibacter lacuscaerulensis ITI-1157
RepID=D0CW09_9RHOB
Length = 291
Score = 75.1 bits (183), Expect = 2e-12
Identities = 38/82 (46%), Positives = 54/82 (65%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE+RRA+E + VNRL+R SYGPFQL +L+ G VEE+ R+ LRDQ+G +
Sbjct: 209 LREGKNREIRRAIEDIGFTVNRLLRVSYGPFQLGNLKPGEVEEIRRRVLRDQLGLGPEDK 268
Query: 193 REQDRHKRKPPKRGTHASKKAR 258
+ +P + A +K+R
Sbjct: 269 PTPAKRPARPQRSRKPAGRKSR 290
[59][TOP]
>UniRef100_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199
RepID=A8U325_9PROT
Length = 387
Score = 75.1 bits (183), Expect = 2e-12
Identities = 46/119 (38%), Positives = 66/119 (55%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RR +E + L V+RLIRT+YGPFQL + G VEE+ R+ L+DQ+G +
Sbjct: 186 VALREGKNREIRRVMEHVGLTVSRLIRTTYGPFQLGEVPPGGVEEIKRRVLKDQLG--LA 243
Query: 187 IPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRRQ 363
+ K KP + GT PG + L +S + + + + GGR Q
Sbjct: 244 KGDDSGHAKAKPERTGT---------QPPGRRPGTLRLRSKPTDIEVESDRPSSGGRVQ 293
[60][TOP]
>UniRef100_Q2RWN9 Pseudouridine synthase n=1 Tax=Rhodospirillum rubrum ATCC 11170
RepID=Q2RWN9_RHORT
Length = 293
Score = 74.7 bits (182), Expect = 3e-12
Identities = 43/112 (38%), Positives = 61/112 (54%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+ V +REGKNRE+RR +E L L V+RLIR +YGPFQL L+ G V+E+ K +R+Q+G
Sbjct: 181 LSVSLREGKNREIRRVMEHLGLPVSRLIRVAYGPFQLGQLEEGTVDEIPGKIMREQLGKD 240
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPP 336
P + K K K K S + + +V A + A +P P
Sbjct: 241 APPPPRRAEAKAKGNKGAAPPPKGTLSLPESSNTGRVARIARATRRAHKPEP 292
[61][TOP]
>UniRef100_C5B254 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens AM1
RepID=C5B254_METEA
Length = 669
Score = 74.7 bits (182), Expect = 3e-12
Identities = 50/129 (38%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNREV+R LE L L VNRLIR S+GPFQL L+ G VEE+ K L+DQ+G +
Sbjct: 201 LREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEIRTKVLKDQLGKNLAEQ 260
Query: 184 -----DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQ 348
+ P + PK+ T A++ A P + G+Q A ++
Sbjct: 261 AGVDFESPVRETIAPFGSPKKATRAAQAA-----PAGR----GRQGARDEGASEARSGSR 311
Query: 349 GGRRQGPPR 375
GG PPR
Sbjct: 312 GGAAGRPPR 320
[62][TOP]
>UniRef100_A9VXR1 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens PA1
RepID=A9VXR1_METEP
Length = 669
Score = 74.7 bits (182), Expect = 3e-12
Identities = 50/129 (38%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNREV+R LE L L VNRLIR S+GPFQL L+ G VEE+ K L+DQ+G +
Sbjct: 201 LREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEIRTKVLKDQLGKNLAEQ 260
Query: 184 -----DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQ 348
+ P + PK+ T A++ A P + G+Q A ++
Sbjct: 261 AGVDFESPVRETIAPFGSPKKATRATQAA-----PAGR----GRQGARDEGASEARSGSR 311
Query: 349 GGRRQGPPR 375
GG PPR
Sbjct: 312 GGSAGRPPR 320
[63][TOP]
>UniRef100_C7CI29 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens DM4
RepID=C7CI29_METED
Length = 669
Score = 74.7 bits (182), Expect = 3e-12
Identities = 50/129 (38%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNREV+R LE L L VNRLIR S+GPFQL L+ G VEE+ K L+DQ+G +
Sbjct: 201 LREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEIRTKVLKDQLGKNLAEQ 260
Query: 184 -----DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQ 348
+ P + PK+ T A++ A P + G+Q A ++
Sbjct: 261 AGVDFESPVRETIAPFGSPKKATRATQAA-----PAGR----GRQGARDEGASEARSGSR 311
Query: 349 GGRRQGPPR 375
GG PPR
Sbjct: 312 GGAAGRPPR 320
[64][TOP]
>UniRef100_B4W9R3 Pseudouridine synthase n=1 Tax=Brevundimonas sp. BAL3
RepID=B4W9R3_9CAUL
Length = 519
Score = 74.7 bits (182), Expect = 3e-12
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRD----- 165
+ V I EGKNREVR+ LE++ L VNRLIR +YGPF+L L G+VEEVG + +R+
Sbjct: 270 ISVSITEGKNREVRKVLESVGLTVNRLIRLAYGPFRLDVLPIGSVEEVGPRVIRELLADY 329
Query: 166 ------QVGHLVDIPRE-QDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAK 324
G+ V+ P R P +G S + KP R Q+ A +
Sbjct: 330 IRPENLPTGNTVETPAPIPGRRVSTPIVKGRSGSAMSDPSRKPSRVRAAETAQADAVERR 389
Query: 325 RPPPKK---AQGGRRQGPPR 375
PPKK A+ + G P+
Sbjct: 390 ERPPKKEGWAKAAPKTGHPK 409
[65][TOP]
>UniRef100_B6JIV3 Pseudouridine synthase n=1 Tax=Oligotropha carboxidovorans OM5
RepID=B6JIV3_OLICO
Length = 693
Score = 74.3 bits (181), Expect = 4e-12
Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
IREGKNREVR + L L+VNRLIR SYGPFQL + G VEE+ + LR+Q+G +
Sbjct: 545 IREGKNREVRNVMAHLGLEVNRLIRVSYGPFQLGEIPEGQVEEIKSRVLREQLGDKIIAL 604
Query: 184 -----DIP-REQDRHKRKPPKRGTHASKKA------RSDSKPGSKRQVLGKQSAAQNAKR 327
D P +E D + K + GT KA RS + R+V+ ++S + A+
Sbjct: 605 AGAQFDKPVQEGDDAEAKLGRDGTPLRSKAANKKIKRSAIEDRKGRRVVVQRSGSDEARA 664
Query: 328 PPPKKAQGGRRQGPPR 375
+A G GPPR
Sbjct: 665 RNEAEAGG---YGPPR 677
[66][TOP]
>UniRef100_A3SRI5 Pseudouridine synthase n=1 Tax=Roseovarius nubinhibens ISM
RepID=A3SRI5_9RHOB
Length = 268
Score = 74.3 bits (181), Expect = 4e-12
Identities = 35/58 (60%), Positives = 46/58 (79%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ V IREGKNRE+RRA+E++ L VNRLIR SYGPFQL L+ G VEE+ + +R+Q+G
Sbjct: 184 ITVAIREGKNREIRRAMESVGLSVNRLIRVSYGPFQLGQLKSGEVEEIRPRVMREQLG 241
[67][TOP]
>UniRef100_B6IXC3 Pseudouridine synthase n=1 Tax=Rhodospirillum centenum SW
RepID=B6IXC3_RHOCS
Length = 551
Score = 73.9 bits (180), Expect = 5e-12
Identities = 58/157 (36%), Positives = 79/157 (50%), Gaps = 4/157 (2%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV- 183
V +REG+NREVRR +E L L V+RLIR +YGPFQL L+ G VEEV R+ LRDQ+
Sbjct: 208 VSLREGRNREVRRVMEHLGLPVSRLIRVAYGPFQLGKLEPGQVEEVPRRVLRDQLPGFFA 267
Query: 184 --DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGR 357
D R P + +A D+ P S + G ++ A+ A ++A+ G
Sbjct: 268 AEDAAAADGRPAAGPVRMRYDRLPRAARDAAPPSATK--GGRAPAREA--GGQEQARRGP 323
Query: 358 RQGPPRTKR*ELSPALIADAILP-RRMDAIRAQPATR 465
R P E L+ D+ P R A R +P R
Sbjct: 324 RAKPSARSAREAVQRLLGDSRPPERERPARRPRPEER 360
[68][TOP]
>UniRef100_A9HEJ7 Pseudouridine synthase n=1 Tax=Gluconacetobacter diazotrophicus PAl
5 RepID=A9HEJ7_GLUDA
Length = 264
Score = 73.9 bits (180), Expect = 5e-12
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNREVR+ + L+L V+RLIRTSYGPFQL +LQR +EEV K LR+QV L
Sbjct: 198 VALREGKNREVRKVMRGLNLHVSRLIRTSYGPFQLGTLQRSELEEVPGKVLREQVPGLGP 257
Query: 187 IPREQDR 207
PR R
Sbjct: 258 APRPARR 264
[69][TOP]
>UniRef100_C7D9N5 Pseudouridine synthase n=1 Tax=Thalassiobium sp. R2A62
RepID=C7D9N5_9RHOB
Length = 267
Score = 73.9 bits (180), Expect = 5e-12
Identities = 40/79 (50%), Positives = 54/79 (68%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
IREGKNRE+RR +E L + VNRLIR SYGPFQL +++ G VEE+ + +RDQ+G +D P
Sbjct: 192 IREGKNREIRRTMEALGVTVNRLIRISYGPFQLGNIKAGEVEELKSRVVRDQLG--LD-P 248
Query: 193 REQDRHKRKPPKRGTHASK 249
R + RK +G + K
Sbjct: 249 RPKPERTRKTGAKGKNTRK 267
[70][TOP]
>UniRef100_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633
RepID=A3UFV9_9RHOB
Length = 354
Score = 73.9 bits (180), Expect = 5e-12
Identities = 54/140 (38%), Positives = 73/140 (52%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V I+EGKNREVR+ L+++ L VNRL+R +YGPFQL SL+RG + E LRDQ+G L
Sbjct: 194 VGIKEGKNREVRKVLQSVGLTVNRLMRVAYGPFQLGSLKRGEISESKLSVLRDQLGKL-- 251
Query: 187 IPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRRQG 366
P + D KP + A+ D++ G+ + A A RP K G
Sbjct: 252 YPLDTDGLPLKP-------GETAKPDTRTGTAK-------AKPKANRPHQKSG------G 291
Query: 367 PPRTKR*ELSPALIADAILP 426
PR L AD+I+P
Sbjct: 292 KPRA-------GLDADSIMP 304
[71][TOP]
>UniRef100_B9JA01 Pseudouridylate synthase n=1 Tax=Agrobacterium radiobacter K84
RepID=B9JA01_AGRRK
Length = 680
Score = 73.6 bits (179), Expect = 7e-12
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG------ 174
+REGKNRE++ L L L+VNRLIR SYGPFQL L G V EV + LRDQ+G
Sbjct: 231 LREGKNREIKNVLGALGLEVNRLIRISYGPFQLGDLPEGRVLEVRGRTLRDQLGPRLVED 290
Query: 175 ---------HLVDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQ-VLGKQSAAQNAK 324
+ P +D + K P+R + R +P KR+ LG+ ++ +
Sbjct: 291 AKANFDAPLYNASAPAGEDEAEAK-PERAAKEERPRRDRERPEDKRERALGRLDTKRDDR 349
Query: 325 RPPPKKAQGGRRQGPPR 375
R ++ G + P+
Sbjct: 350 RDEGRREGGHKEDDRPK 366
[72][TOP]
>UniRef100_Q0F4X3 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium HTCC2255
RepID=Q0F4X3_9RHOB
Length = 239
Score = 73.6 bits (179), Expect = 7e-12
Identities = 35/56 (62%), Positives = 46/56 (82%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
V +REGKNRE+RRA+E + L+VNRLIRTSYGPF+L L+ G VEE+ K ++DQ+G
Sbjct: 183 VGLREGKNREIRRAMEYVGLRVNRLIRTSYGPFKLDDLKPGDVEEIKAKTIKDQLG 238
[73][TOP]
>UniRef100_UPI00003846BF COG1187: 16S rRNA uridine-516 pseudouridylate synthase and related
pseudouridylate synthases n=1 Tax=Magnetospirillum
magnetotacticum MS-1 RepID=UPI00003846BF
Length = 294
Score = 73.2 bits (178), Expect = 9e-12
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGH- 177
+ V +REGKNRE+RR +E L V+RLIR SYGPFQL +L+ GA +EV K LR+Q+G
Sbjct: 182 LSVSLREGKNREIRRVMEFLGWPVSRLIRVSYGPFQLGTLEEGAADEVAGKVLREQMGEG 241
Query: 178 -LVDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKR 327
V PR +++ + K + KAR K K++ + +R
Sbjct: 242 KAVLKPRPENKSAGEREKE-QRVAAKARKQKLADDKHAASAKKAKSDAHRR 291
[74][TOP]
>UniRef100_Q1QIP1 Pseudouridine synthase n=1 Tax=Nitrobacter hamburgensis X14
RepID=Q1QIP1_NITHX
Length = 687
Score = 73.2 bits (178), Expect = 9e-12
Identities = 51/148 (34%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
IREGKNREVR + L L+VNRLIR SYGPFQL + G VEEV + LR+Q+G +
Sbjct: 539 IREGKNREVRNVMAHLGLEVNRLIRVSYGPFQLAEIAEGQVEEVKTRVLREQLGDKIAAL 598
Query: 193 REQD-----RHKRKPPKRGTHASK-KARSDSKPGSKRQVL-------------------G 297
+ PK G + +++ D+K +KR ++
Sbjct: 599 ANANFAGTAAEAETEPKLGRDGTPLRSKKDNKARAKRSLIEDRKGRNVVVQRTGSDEARA 658
Query: 298 KQSAAQNAKRPP--PKKAQGGRRQGPPR 375
+ A N PP PK+ G+R PR
Sbjct: 659 RNEAEANGYGPPRRPKRGYHGKRDLTPR 686
[75][TOP]
>UniRef100_B8GYA0 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides
RepID=B8GYA0_CAUCN
Length = 421
Score = 73.2 bits (178), Expect = 9e-12
Identities = 62/179 (34%), Positives = 85/179 (47%), Gaps = 23/179 (12%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+ V + EGKNREVR+ LE++ LKVNRLIR SYGPF L +L G +EEVG + +R+ + +
Sbjct: 215 ITVSLSEGKNREVRKVLESIGLKVNRLIRLSYGPFALGTLAAGQIEEVGPRVIRELLEGV 274
Query: 181 VDIPREQ---DRHK-------RKPP---------KRGTHASKKARSDSKPGSKRQVLGKQ 303
V P DR K K P +RG + +A P + + K
Sbjct: 275 VS-PENMPTGDRPKFAGIANPTKAPGTEGGGELQRRGAPRADRAVILDTPEKPEKPVYKP 333
Query: 304 SAAQNAKRP----PPKKAQGGRRQGPPRTKR*ELSPALIADAILPRRMDAIRAQPATRR 468
A+ K+ PPK A G +GP + KR S I + A R +PA R
Sbjct: 334 GWAKPKKKASPHGPPKGAGKGPAKGPAKAKRPAKS---IESKFIDIGKPAARGKPAAPR 389
[76][TOP]
>UniRef100_A8I6C3 Pseudouridine synthase n=1 Tax=Azorhizobium caulinodans ORS 571
RepID=A8I6C3_AZOC5
Length = 717
Score = 73.2 bits (178), Expect = 9e-12
Identities = 52/131 (39%), Positives = 69/131 (52%), Gaps = 20/131 (15%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGH- 177
+ V +REGKNREVR L L L+VNRLIR SYGPFQL + G VEEV + LRDQ+G+
Sbjct: 205 ITVALREGKNREVRNVLGALGLQVNRLIRISYGPFQLGEIAEGGVEEVRTRILRDQIGND 264
Query: 178 ------------LVDIPREQDR-------HKRKPPKRGTHASKKARSDSKPGSKRQVLGK 300
LV+ E++ KRK P+ A KA + SKP + + +
Sbjct: 265 IAAAAGADFNGPLVEREPEEEAPRRPLGLDKRKLPRAAEVADAKA-AVSKPARRERRSAE 323
Query: 301 QSAAQNAKRPP 333
+ +RPP
Sbjct: 324 PEI--DPERPP 332
[77][TOP]
>UniRef100_B9NMQ2 Pseudouridine synthase n=1 Tax=Rhodobacteraceae bacterium KLH11
RepID=B9NMQ2_9RHOB
Length = 298
Score = 73.2 bits (178), Expect = 9e-12
Identities = 41/97 (42%), Positives = 58/97 (59%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE+RRA+E + VNRL+R SYGPFQL L+ G VEE+ R+ +RDQ+G
Sbjct: 215 LREGKNREIRRAIEDIGYVVNRLLRVSYGPFQLGDLKPGEVEEIRRRVMRDQLG------ 268
Query: 193 REQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQ 303
+ + + P KR ++P KR +GK+
Sbjct: 269 LDAEGDGKAPAKR----------PARPQRKRPAIGKK 295
[78][TOP]
>UniRef100_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. JE062
RepID=B6R892_9RHOB
Length = 681
Score = 72.8 bits (177), Expect = 1e-11
Identities = 47/118 (39%), Positives = 62/118 (52%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNREV+R LE LDL VNRLIR S+GPFQL L G ++E+ + LRDQ+G +
Sbjct: 216 LREGKNREVKRILEHLDLSVNRLIRISFGPFQLGDLGEGELQEIRGRVLRDQLGERLVSE 275
Query: 193 REQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRRQG 366
+ D + SKKA K S G +A++A K + R G
Sbjct: 276 ADLDFDAPIINQMDARTSKKAEMKKKKKSSGGAGGGWISAKDAAAVLAKHNKKPMRHG 333
[79][TOP]
>UniRef100_A4TV30 Pseudouridine synthase n=1 Tax=Magnetospirillum gryphiswaldense
RepID=A4TV30_9PROT
Length = 287
Score = 72.8 bits (177), Expect = 1e-11
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 9/91 (9%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGH--- 177
+ ++EGKNRE+RR +E L V+RLIR SYGPFQL SL+ G VEEV K +++Q+G
Sbjct: 196 ISLKEGKNREIRRVMEHLGWPVSRLIRVSYGPFQLGSLEEGGVEEVPGKIVKEQLGQGGG 255
Query: 178 ------LVDIPREQDRHKRKPPKRGTHASKK 252
D PR HK+ + +H +++
Sbjct: 256 NWAKADTEDRPRPPSNHKKPHAGKASHENRR 286
[80][TOP]
>UniRef100_A3JVK9 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium HTCC2150
RepID=A3JVK9_9RHOB
Length = 259
Score = 72.8 bits (177), Expect = 1e-11
Identities = 37/56 (66%), Positives = 43/56 (76%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
V IREGKNRE+RRA ET+ L VNRLIR SYGPFQL L+ VEE+ + LRDQ+G
Sbjct: 186 VGIREGKNREIRRAFETIFLPVNRLIRVSYGPFQLNDLRADEVEEIKGRVLRDQLG 241
[81][TOP]
>UniRef100_B8IDJ4 Pseudouridine synthase n=1 Tax=Methylobacterium nodulans ORS 2060
RepID=B8IDJ4_METNO
Length = 576
Score = 72.0 bits (175), Expect = 2e-11
Identities = 60/161 (37%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL---- 180
+REGKNREV+R LE L L VNRLIR S+GPFQL L+ G VEEV K L++Q+G
Sbjct: 214 LREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEVRTKVLKEQLGTALAEQ 273
Query: 181 --VDIP---REQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKA 345
VD RE P A+ A++ G R G++ A + A
Sbjct: 274 AGVDFTSPVREPIAPFGSPKGARKTAAATAQAPQGRGEGRPARGERPAWGERPMWGERPA 333
Query: 346 QGGRRQGPPRTKR*ELSPALIADAILPRRMDAIRAQPATRR 468
+GGR P+ R +P P R A PA RR
Sbjct: 334 RGGRDPARPQFGR---AP---GPGTRPERSRTPEAGPAPRR 368
[82][TOP]
>UniRef100_Q3SPI8 Pseudouridine synthase n=1 Tax=Nitrobacter winogradskyi Nb-255
RepID=Q3SPI8_NITWN
Length = 680
Score = 71.6 bits (174), Expect = 3e-11
Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 26/147 (17%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
IREGKNREVR + L L+VNRLIR SYGPFQL + G VEEV + LR+Q+G +
Sbjct: 533 IREGKNREVRNVMAHLGLEVNRLIRISYGPFQLAEIAEGEVEEVKTRVLREQLGDRIATL 592
Query: 193 REQDRHKRKPPKRGTHASK-----KARSDSKPGSKRQVL-------------------GK 300
D + + +++ D+K +KR ++ +
Sbjct: 593 ANMDPSGAAAEAGAANLGRDGTPLRSKKDNKARTKRALIEDRQGRSVVVQRTGSDEARAR 652
Query: 301 QSAAQNAKRPP--PKKAQGGRRQGPPR 375
A N PP PK+ G+R PR
Sbjct: 653 NEAEANGYGPPRRPKRGYHGKRDLTPR 679
[83][TOP]
>UniRef100_Q6G4S2 Pseudouridine synthase n=1 Tax=Bartonella henselae
RepID=Q6G4S2_BARHE
Length = 465
Score = 71.2 bits (173), Expect = 3e-11
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ V +REGKNRE++ L L L VNRLIR SYGPFQL L+ GAV E+ + LRDQ+G
Sbjct: 183 LSVALREGKNREIKNILGALGLSVNRLIRISYGPFQLSDLEEGAVREIKGRMLRDQLG 240
[84][TOP]
>UniRef100_Q6G0K3 Pseudouridine synthase n=1 Tax=Bartonella quintana
RepID=Q6G0K3_BARQU
Length = 467
Score = 71.2 bits (173), Expect = 3e-11
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ V +REGKNRE++ L L L VNRLIR SYGPFQL L+ GAV E+ + LRDQ+G
Sbjct: 183 LSVALREGKNREIKNVLGALGLSVNRLIRVSYGPFQLSDLEEGAVRELKGRMLRDQLG 240
[85][TOP]
>UniRef100_Q0G3T3 Pseudouridine synthase n=1 Tax=Fulvimarina pelagi HTCC2506
RepID=Q0G3T3_9RHIZ
Length = 639
Score = 71.2 bits (173), Expect = 3e-11
Identities = 52/143 (36%), Positives = 70/143 (48%), Gaps = 22/143 (15%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNREV+ L L L+VNRLIR SYGPFQL L G+V EV + LRDQ+G +
Sbjct: 363 LREGKNREVKNVLGALGLEVNRLIRLSYGPFQLGDLAEGSVREVKGRTLRDQLGDRLVEE 422
Query: 184 -----DIPRE--------QDRHKRKPPKRGTHASKKARSDSKP-GSKR--QVLGKQSAAQ 315
D P + R +P K+ S + D K G K+ + LG+
Sbjct: 423 AGVDFDGPINKPFSNAPVEGRQDARPSKKSDWVSAGGKVDRKTFGEKKREEALGRLDTKP 482
Query: 316 NAK---RPPPKKAQGGRRQGPPR 375
K +P + +G RR P+
Sbjct: 483 RGKFGDKPGDDRRRGDRRSDGPK 505
[86][TOP]
>UniRef100_A3X1I3 Pseudouridine synthase n=1 Tax=Nitrobacter sp. Nb-311A
RepID=A3X1I3_9BRAD
Length = 635
Score = 70.9 bits (172), Expect = 4e-11
Identities = 52/148 (35%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
IREGKNREVR + L L+VNRLIR SYGPFQL + G VEEV + LR+Q G +
Sbjct: 488 IREGKNREVRNVMAHLGLEVNRLIRISYGPFQLAEIAEGEVEEVKTRVLREQFGDRIAAL 547
Query: 184 --------------------DIPREQDRHKRKPPKRGTHASKKARS--DSKPGSKRQVLG 297
P + + KR +K RS + GS +
Sbjct: 548 ANMNPAGATAESGAVKLGRDGTPLRSKKDNKARTKRALIEDRKGRSVVVQRTGSD-EARA 606
Query: 298 KQSAAQNAKRPP--PKKAQGGRRQGPPR 375
+ A N PP PK+ G+R PR
Sbjct: 607 RNEAEANGYGPPRRPKRGYHGKRDLTPR 634
[87][TOP]
>UniRef100_A7IJY1 Pseudouridine synthase n=1 Tax=Xanthobacter autotrophicus Py2
RepID=A7IJY1_XANP2
Length = 620
Score = 70.5 bits (171), Expect = 6e-11
Identities = 33/59 (55%), Positives = 42/59 (71%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGH 177
+ V +REGKNRE+R L L+VNRLIR SYGPFQL + G +EEV + LRDQ+G+
Sbjct: 205 ITVSLREGKNREIRNVFGALGLQVNRLIRVSYGPFQLGDVPEGGIEEVRTRVLRDQIGN 263
[88][TOP]
>UniRef100_Q5MXK8 Pseudouridine synthase n=1 Tax=Agrobacterium vitis
RepID=Q5MXK8_AGRVI
Length = 240
Score = 70.5 bits (171), Expect = 6e-11
Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG-HLVDI 189
+REGKNRE++ L L L+VNRLIR SYGPFQL L V+EV + LRDQ+G L+ +
Sbjct: 160 LREGKNREIKNVLGALGLEVNRLIRISYGPFQLGDLPESQVQEVRGRMLRDQLGPRLISL 219
Query: 190 -PREQDRHKRKPPKRGTHA 243
PRE + PP G A
Sbjct: 220 KPREWSCARTIPPTDGPRA 238
[89][TOP]
>UniRef100_Q1YH15 Pseudouridine synthase n=1 Tax=Aurantimonas manganoxydans SI85-9A1
RepID=Q1YH15_MOBAS
Length = 497
Score = 70.5 bits (171), Expect = 6e-11
Identities = 51/142 (35%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNREV++ L L L+VNRLIR S+GPFQL L+ G+V+E+ + LRDQ+G +
Sbjct: 248 LREGKNREVKKVLAHLGLEVNRLIRLSFGPFQLGDLKEGSVQEIKGRMLRDQLGERLIEE 307
Query: 184 -----DIPREQDRHKRKPPKRGTHASKKA-----RSDSKPGSKRQVLGKQSAAQNAKRPP 333
D P + R T KKA S++ P KR + AKR
Sbjct: 308 SGADFDAPVAKPFSNRPVEAERTERPKKADEWISASETAPNKKR--------VREAKRED 359
Query: 334 PKKAQGGRRQGPPRTKR*ELSP 399
R P R R + P
Sbjct: 360 ALGRLDTRAGRPERNDRGDRKP 381
[90][TOP]
>UniRef100_C6ABR7 Pseudouridine synthase n=1 Tax=Bartonella grahamii as4aup
RepID=C6ABR7_BARGA
Length = 466
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ V +REGKNRE++ L L L VNRLIR SYGPF L L+ GAV+E+ + LRDQ+G
Sbjct: 183 LSVALREGKNREIKNVLGALGLSVNRLIRVSYGPFHLSDLEEGAVQELKGRMLRDQLG 240
[91][TOP]
>UniRef100_B0ULR7 Pseudouridine synthase n=1 Tax=Methylobacterium sp. 4-46
RepID=B0ULR7_METS4
Length = 609
Score = 70.1 bits (170), Expect = 7e-11
Identities = 66/185 (35%), Positives = 84/185 (45%), Gaps = 33/185 (17%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL---- 180
+REGKNREV+R LE L L VNRLIR S+GPFQL L+ G VEEV K L++Q+G
Sbjct: 219 LREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEVRTKVLKEQLGRSLAEQ 278
Query: 181 --VDIP---RE----------------------QDRHKRKPPKRGTHASKKARSDSKPGS 279
VD RE +DR + + P R + R D G
Sbjct: 279 AGVDFTSPVREPIAPFGSPKPPAPAAGRTGAPGRDRPRGERPDRSARPDRGERLDR--GE 336
Query: 280 KRQVLGKQSAAQNAKRPPPKKAQGGRRQGPPRTKR*ELSPALIADAIL--PRRMDAIRAQ 453
+ G+ A RPP A G R P R ++ PAL A+ P A+ A+
Sbjct: 337 RPARPGRDPARPQFARPP---APGAR---PERDRKPATGPAL-RRAVWHDPEIEAAVEAR 389
Query: 454 PATRR 468
P RR
Sbjct: 390 PRLRR 394
[92][TOP]
>UniRef100_A1UU09 Pseudouridine synthase n=1 Tax=Bartonella bacilliformis KC583
RepID=A1UU09_BARBK
Length = 499
Score = 70.1 bits (170), Expect = 7e-11
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ V +REGKNRE++ L L L VNRLIR SYGPFQL L+ GAV E+ + LRDQ+G
Sbjct: 220 LSVALREGKNREIKNFLGALGLSVNRLIRVSYGPFQLSDLEEGAVRELKGRTLRDQLG 277
[93][TOP]
>UniRef100_Q92KL3 Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti
RepID=Q92KL3_RHIME
Length = 573
Score = 69.7 bits (169), Expect = 1e-10
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNRE++ L L L VNRLIR SYGPFQL L G V+E+ + LR+Q+G +
Sbjct: 226 LREGKNREIKNVLGALGLDVNRLIRISYGPFQLGELPIGQVQEIRGRTLREQLGPRLIAD 285
Query: 184 -----DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQ 348
D P D+ P+ KA SK + A + +R + ++
Sbjct: 286 SKANFDAPIYNDQPAAAEPEAEPADHGKAEWGSKREKAEDKRERALARLDTRRDDGRPSE 345
Query: 349 GGRRQGPPRTK 381
GR +G P +
Sbjct: 346 RGRSRGKPEER 356
[94][TOP]
>UniRef100_C6QBS8 Pseudouridine synthase n=1 Tax=Hyphomicrobium denitrificans ATCC
51888 RepID=C6QBS8_9RHIZ
Length = 302
Score = 69.7 bits (169), Expect = 1e-10
Identities = 44/92 (47%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG-- 174
+ + IREGKNREVR L L L VNRLIR S+GPFQLL L GAVE V R+ L Q+G
Sbjct: 213 LSISIREGKNREVRNVLAYLGLTVNRLIRVSFGPFQLLDLAPGAVEAVRRRVLVAQLGPK 272
Query: 175 HLVDIPREQDRHKRKPPKRGTHASKKARSDSK 270
+ + + +RK HA KA S S+
Sbjct: 273 AAASLGLSESQEERKE----RHARGKAASGSR 300
[95][TOP]
>UniRef100_A9D0F0 Putative ribosomal large subunit pseudouridine synthase B n=1
Tax=Hoeflea phototrophica DFL-43 RepID=A9D0F0_9RHIZ
Length = 520
Score = 69.7 bits (169), Expect = 1e-10
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE++ L L L VNRLIR S+GPFQL ++ G V E+ + LR+Q+G V +
Sbjct: 220 LREGKNREIKNVLSALGLDVNRLIRISFGPFQLGDVREGDVVEIKSRTLREQLG--VRLI 277
Query: 193 REQDRHKRKPPKRGTHASKKARSDS---KPGSKRQVLGKQSAAQNAKRPPPKKAQGGRRQ 363
E + P ASKK S KP ++R+ + + A+ K R
Sbjct: 278 EESGANFDAPLNDSAPASKKEAKPSPAAKP-AQREWISSSEKVERARARFDTKPGRPDRD 336
Query: 364 GPPRTKR*ELSP 399
G P +R E P
Sbjct: 337 GKPGERRSEWGP 348
[96][TOP]
>UniRef100_Q5FSS1 Pseudouridine synthase n=1 Tax=Gluconobacter oxydans
RepID=Q5FSS1_GLUOX
Length = 264
Score = 69.3 bits (168), Expect = 1e-10
Identities = 38/67 (56%), Positives = 47/67 (70%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVD 186
V +REGKNRE+RR +E L+L V+RLIR SYGPFQL SL+ +EEV K LR+QV L
Sbjct: 198 VSLREGKNREIRRVMEGLNLHVSRLIRLSYGPFQLGSLKARELEEVPGKTLREQVPDLPA 257
Query: 187 IPREQDR 207
R + R
Sbjct: 258 PKRHRTR 264
[97][TOP]
>UniRef100_A9IN55 Pseudouridine synthase n=1 Tax=Bartonella tribocorum CIP 105476
RepID=A9IN55_BART1
Length = 466
Score = 69.3 bits (168), Expect = 1e-10
Identities = 32/58 (55%), Positives = 42/58 (72%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNRE++ L L L VNRLIR SYGPF L L+ GAV+E+ + LRDQ+G
Sbjct: 183 LSIALREGKNREIKNVLGALGLSVNRLIRVSYGPFHLSDLKEGAVQELKGRMLRDQLG 240
[98][TOP]
>UniRef100_C6XHY6 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus
str. psy62 RepID=C6XHY6_LIBAP
Length = 354
Score = 68.9 bits (167), Expect = 2e-10
Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG-H 177
V V +REGKNRE+++ E + KVNRLIR SYGPFQL +L G+ EV +K LR+Q+G H
Sbjct: 189 VTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGSTREVSKKILREQLGPH 248
Query: 178 LVD 186
L++
Sbjct: 249 LLE 251
[99][TOP]
>UniRef100_A3VS43 Pseudouridine synthase n=1 Tax=Parvularcula bermudensis HTCC2503
RepID=A3VS43_9PROT
Length = 253
Score = 68.9 bits (167), Expect = 2e-10
Identities = 38/56 (67%), Positives = 39/56 (69%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
V I EGKNREVR L L VNRLIR SYGPFQL L G VEEV RKQL +QVG
Sbjct: 185 VAIAEGKNREVRAICRHLGLTVNRLIRVSYGPFQLGHLAEGEVEEVPRKQLIEQVG 240
[100][TOP]
>UniRef100_C6XQT2 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814
RepID=C6XQT2_HIRBI
Length = 508
Score = 68.2 bits (165), Expect = 3e-10
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+++ + EGK RE RRALE++ L VNRLIR SYGPF+L L G V E+ +L + G
Sbjct: 209 IDMTLTEGKKREARRALESVGLIVNRLIRVSYGPFELGDLVEGGVAEIPAGELLSEFGDS 268
Query: 181 VDIPR------------EQDRHKRKPPKRG-----THASKKARSDSKP--GSK--RQVLG 297
+ R E D +R+ R T +KK + KP G K + G
Sbjct: 269 ISRKRRPDPASVPQSYLEPDTKRRRTKGRDEDTSQTAPAKKPAATIKPLRGEKFEKPSSG 328
Query: 298 KQSAAQNAKRPPPKKAQGGRRQGPPRTKR*ELS-PALIADAILPRRMDAIRAQPATRR 468
++ A ++ KR P + R + + S PA +A++P + R A R+
Sbjct: 329 REPAQRSHKRQTPHRYAALREGAETNPEPRDFSKPAKPGEAVVPASLAKTRKTTAPRK 386
[101][TOP]
>UniRef100_A9CK15 Ribosomal large subunit pseudouridine synthase B n=1
Tax=Agrobacterium tumefaciens str. C58
RepID=A9CK15_AGRT5
Length = 669
Score = 68.2 bits (165), Expect = 3e-10
Identities = 45/102 (44%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNRE++ L L L+VNRLIR SYGPFQL L G V EV + LRDQ+G +
Sbjct: 236 LREGKNREIKNVLGALGLEVNRLIRISYGPFQLGDLPEGKVLEVRGRMLRDQLGPRLIEE 295
Query: 184 -----DIP---REQDRHKRKPPKRGTHASKKARSDSKPGSKR 285
D P D + P KR S+ A+SD+ G R
Sbjct: 296 AGANFDAPIYNTSVDDEEEAPAKRA--KSEWAKSDAPEGKPR 335
[102][TOP]
>UniRef100_Q2KBZ0 Pseudouridine synthase n=1 Tax=Rhizobium etli CFN 42
RepID=Q2KBZ0_RHIEC
Length = 628
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG-HLVD- 186
+REGKNRE++ L L L VNRLIR SYGPFQL L G V EV + LRDQ+G L++
Sbjct: 231 LREGKNREIKNVLGALGLDVNRLIRISYGPFQLGDLPEGHVVEVRGRTLRDQLGPRLIEE 290
Query: 187 --------------IPREQDR-----HKRKPPKRGTHASKKA--RSDSKPGSKRQVLGKQ 303
+ E++ KR+ P+R ++A R D+K +R +
Sbjct: 291 AKANFDAPIYNAPAVAAEEETEAAAPEKRERPRRDEDKRERALSRLDTKRDDRRGAGRRD 350
Query: 304 SAAQNAKRPPPKKAQGGRRQGPPRTKR*ELSPALIADAILPRRMDAIRAQPATRRGK 474
++ R K + + G R+ ++P A AQ A RRG+
Sbjct: 351 DDRRDGGRKDDDKPKRSQPPGQRRSANVWMAPGARPLGEKAAAKAAKNAQAARRRGE 407
[103][TOP]
>UniRef100_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K31
RepID=B0T1Z8_CAUSK
Length = 501
Score = 67.4 bits (163), Expect = 5e-10
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+ + + EGKNREVRR LE++ LKVNRLIR SYGPF L +L G VEEVG + +R+ + +
Sbjct: 204 ITLTLSEGKNREVRRVLESIGLKVNRLIRLSYGPFALGTLLPGQVEEVGPRVIRELLEGI 263
Query: 181 V 183
V
Sbjct: 264 V 264
[104][TOP]
>UniRef100_C7JG99 tRNA/rRNA pseudouridine synthase n=8 Tax=Acetobacter pasteurianus
RepID=C7JG99_ACEP3
Length = 258
Score = 67.4 bits (163), Expect = 5e-10
Identities = 32/55 (58%), Positives = 44/55 (80%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQV 171
V ++EGKNRE+R+ + ++L V+RLIRTSYGPFQL +LQR +EEV + LRDQ+
Sbjct: 185 VSLKEGKNREIRKVMAGMNLHVSRLIRTSYGPFQLGTLQRRELEEVSPRVLRDQL 239
[105][TOP]
>UniRef100_C3MGU9 Pseudouridylate synthase, subunit B protein n=1 Tax=Rhizobium sp.
NGR234 RepID=C3MGU9_RHISN
Length = 607
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/108 (39%), Positives = 56/108 (51%), Gaps = 16/108 (14%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNRE++ L L L VNRLIR SYGPFQL L G V+E+ + LRDQ+G +
Sbjct: 226 LREGKNREIKNVLGALGLDVNRLIRISYGPFQLGELPEGHVQEIRGRTLRDQLGPRLIAE 285
Query: 184 -----DIP--------REQDRHKRKPPKRGTHASKKARSDSKPGSKRQ 288
D P E++ H P+ G S + KP KR+
Sbjct: 286 SKANFDAPLYNDQPAAPEREAHNEVAPEWGKERSARR---EKPEDKRE 330
[106][TOP]
>UniRef100_UPI0001B598AF hypothetical protein Bmelb3E_04410 n=1 Tax=Brucella melitensis bv.
3 str. Ether RepID=UPI0001B598AF
Length = 611
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 279 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 336
[107][TOP]
>UniRef100_D0B641 RNA pseudouridylate synthase n=3 Tax=Brucella melitensis
RepID=D0B641_BRUME
Length = 581
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 249 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 306
[108][TOP]
>UniRef100_C9VE92 RNA-binding S4 domain-containing protein n=2 Tax=Brucella ceti
RepID=C9VE92_9RHIZ
Length = 581
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 249 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 306
[109][TOP]
>UniRef100_UPI0001B57311 hypothetical protein Bmelb26_05222 n=1 Tax=Brucella melitensis bv.
2 str. 63/9 RepID=UPI0001B57311
Length = 611
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 279 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 336
[110][TOP]
>UniRef100_UPI0001B487FC RNA pseudouridylate synthase family protein n=1 Tax=Brucella sp.
83/13 RepID=UPI0001B487FC
Length = 577
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 249 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 306
[111][TOP]
>UniRef100_C9U0L5 RNA-binding S4 domain-containing protein n=2 Tax=Brucella
pinnipedialis B2/94 RepID=C9U0L5_9RHIZ
Length = 581
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 249 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 306
[112][TOP]
>UniRef100_UPI0001B47B1E RNA pseudouridylate synthase family protein n=1 Tax=Brucella
pinnipedialis M163/99/10 RepID=UPI0001B47B1E
Length = 581
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 249 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 306
[113][TOP]
>UniRef100_UPI0001B474E7 RNA-binding S4 domain-containing protein n=1 Tax=Brucella suis bv.
5 str. 513 RepID=UPI0001B474E7
Length = 581
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 249 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 306
[114][TOP]
>UniRef100_Q60CV8 Pseudouridine synthase n=1 Tax=Brucella suis RepID=Q60CV8_BRUSU
Length = 598
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 266 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 323
[115][TOP]
>UniRef100_C0RKE5 Pseudouridine synthase n=1 Tax=Brucella melitensis ATCC 23457
RepID=C0RKE5_BRUMB
Length = 598
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 266 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 323
[116][TOP]
>UniRef100_A9WXR0 Putative uncharacterized protein n=1 Tax=Brucella suis ATCC 23445
RepID=A9WXR0_BRUSI
Length = 598
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 266 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 323
[117][TOP]
>UniRef100_A9MDW0 Pseudouridine synthase n=3 Tax=Brucella RepID=A9MDW0_BRUC2
Length = 611
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 279 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 336
[118][TOP]
>UniRef100_A5VTU8 Pseudouridine synthase n=1 Tax=Brucella ovis ATCC 25840
RepID=A5VTU8_BRUO2
Length = 598
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 266 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 323
[119][TOP]
>UniRef100_Q1N9D4 Pseudouridine synthase n=1 Tax=Sphingomonas sp. SKA58
RepID=Q1N9D4_9SPHN
Length = 315
Score = 66.2 bits (160), Expect = 1e-09
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQL 159
+E+ + EGKNREVRR LE L LKVNRLIRT+YGPF L L G VEEV + L
Sbjct: 251 IEMTLTEGKNREVRRVLEHLGLKVNRLIRTAYGPFSLGELAVGTVEEVRQHDL 303
[120][TOP]
>UniRef100_Q0FM70 Pseudouridine synthase n=1 Tax=Roseovarius sp. HTCC2601
RepID=Q0FM70_9RHOB
Length = 283
Score = 66.2 bits (160), Expect = 1e-09
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG-HLV 183
V +REGKNRE+RRA+ + L VNRLIR SYGPFQL ++ G V E+ + +RDQ+G
Sbjct: 199 VGLREGKNREIRRAMSDIGLTVNRLIRISYGPFQLGQMKVGEVVELRGRIVRDQLGLEGA 258
Query: 184 DIPREQDRHKRKP 222
R + +RKP
Sbjct: 259 KTTRPEPSRRRKP 271
[121][TOP]
>UniRef100_D0BHV0 RNA pseudouridylate synthase n=1 Tax=Brucella suis bv. 4 str. 40
RepID=D0BHV0_BRUSU
Length = 581
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 249 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 306
[122][TOP]
>UniRef100_C9V6R4 RNA-binding S4 domain-containing protein n=1 Tax=Brucella neotomae
5K33 RepID=C9V6R4_BRUNE
Length = 581
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 249 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 306
[123][TOP]
>UniRef100_C9T9E1 RNA-binding S4 domain-containing protein n=2 Tax=Brucella ceti
RepID=C9T9E1_9RHIZ
Length = 581
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 249 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 306
[124][TOP]
>UniRef100_C7LH50 RNA pseudouridylate synthase family protein n=1 Tax=Brucella
microti CCM 4915 RepID=C7LH50_BRUMC
Length = 611
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 279 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 336
[125][TOP]
>UniRef100_C4WMI2 Pseudouridine synthase n=1 Tax=Ochrobactrum intermedium LMG 3301
RepID=C4WMI2_9RHIZ
Length = 562
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 237 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 294
[126][TOP]
>UniRef100_Q2YJ30 Pseudouridine synthase n=10 Tax=Brucella abortus RepID=Q2YJ30_BRUA2
Length = 581
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 249 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 306
[127][TOP]
>UniRef100_C0G9E7 Pseudouridine synthase n=2 Tax=Brucella RepID=C0G9E7_9RHIZ
Length = 611
Score = 66.2 bits (160), Expect = 1e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 279 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLG 336
[128][TOP]
>UniRef100_B9JSE7 Ribosomal large subunit pseudouridine synthase B n=1
Tax=Agrobacterium vitis S4 RepID=B9JSE7_AGRVS
Length = 704
Score = 65.9 bits (159), Expect = 1e-09
Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNRE++ L L L+VNRLIR SYGPFQL L V+EV + LRDQ+G +
Sbjct: 262 LREGKNREIKNVLGALGLEVNRLIRISYGPFQLGDLPESQVQEVRGRMLRDQLGPRLIEE 321
Query: 184 -----DIPREQDRHKRKPPKRGTHASKKA-----RSDSKPGSKRQVLGKQSAAQNA 321
D P + + A KA + D++P R ++ A + A
Sbjct: 322 SKANFDAPLYSNAPAEEEDAPAPKAKAKAEEGNWKKDTRPAKPRGFDNREDAREKA 377
[129][TOP]
>UniRef100_C8SPY6 RNA-binding S4 domain protein n=1 Tax=Mesorhizobium opportunistum
WSM2075 RepID=C8SPY6_9RHIZ
Length = 607
Score = 65.9 bits (159), Expect = 1e-09
Identities = 51/149 (34%), Positives = 70/149 (46%), Gaps = 28/149 (18%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG-HLVD- 186
+REGKNREV+ L L L V RLIR SYGPFQL L G V E+ + LRDQ+G LV+
Sbjct: 340 LREGKNREVKNILGALGLDVTRLIRISYGPFQLEDLPEGHVLEIKGRVLRDQLGERLVEE 399
Query: 187 ---------------------IPREQDRHKRKPPKRGTH-----ASKKARSDSKPGSKRQ 288
PR+++ + K + G H + GS+ +
Sbjct: 400 SGANFDAEISKPFSNKPVRRTEPRQEEAERPKIMREGDHRPIGEGGLIKNRKRREGSRDE 459
Query: 289 VLGKQSAAQNAKRPPPKKAQGGRRQGPPR 375
LGK S + + + P+K+ G R P R
Sbjct: 460 ALGKLSTSPD-RGERPEKSFGERGPRPER 487
[130][TOP]
>UniRef100_Q2G8T2 Pseudouridine synthase n=1 Tax=Novosphingobium aromaticivorans DSM
12444 RepID=Q2G8T2_NOVAD
Length = 270
Score = 65.5 bits (158), Expect = 2e-09
Identities = 30/48 (62%), Positives = 38/48 (79%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEV 144
+E+ + EGKNREVRR LE L L+V+RL+RT YGPF+L L RGA EE+
Sbjct: 208 IELTLTEGKNREVRRVLEHLGLQVSRLLRTKYGPFELADLPRGAAEEI 255
[131][TOP]
>UniRef100_B3PRC5 Pseudouridine synthase n=1 Tax=Rhizobium etli CIAT 652
RepID=B3PRC5_RHIE6
Length = 645
Score = 65.5 bits (158), Expect = 2e-09
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 19/135 (14%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG-HLVD- 186
+REGKNRE++ L L L VNRLIR SYGPFQL L G V EV + LRDQ+G L++
Sbjct: 231 LREGKNREIKNVLGALGLDVNRLIRISYGPFQLGDLPEGHVIEVRGRTLRDQLGPRLIEE 290
Query: 187 --------------IPREQDRHKRKPPKR---GTHASKKARSDSKPGSKRQVLGKQSAAQ 315
+ E++ P KR K+ R+ S+ +KR
Sbjct: 291 AKANFDAPIYNAPAVAAEEEAEVAAPEKRERPRRDEDKRERALSRLDTKRDDRRGDDRRG 350
Query: 316 NAKRPPPKKAQGGRR 360
A+R ++ GGRR
Sbjct: 351 GARRDDDRR-DGGRR 364
[132][TOP]
>UniRef100_A6X3E0 Pseudouridine synthase n=1 Tax=Ochrobactrum anthropi ATCC 49188
RepID=A6X3E0_OCHA4
Length = 576
Score = 65.5 bits (158), Expect = 2e-09
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+ + +REGKNREV+ L L L V RLIR S+GPFQL L+ GAV E+ + LRDQ+G
Sbjct: 233 ISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRILRDQLG 290
[133][TOP]
>UniRef100_Q1MKW5 Putative ribosomal large subunit pseudouridine synthase B n=1
Tax=Rhizobium leguminosarum bv. viciae 3841
RepID=Q1MKW5_RHIL3
Length = 701
Score = 65.1 bits (157), Expect = 2e-09
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 28/144 (19%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG------ 174
+REGKNRE++ L L L VNRLIR SYGPFQL L G V EV + LRDQ+G
Sbjct: 231 LREGKNREIKNVLGALGLDVNRLIRISYGPFQLGDLPEGHVVEVRGRTLRDQLGPRLIEE 290
Query: 175 ----------HLVDIPREQD-----RHKRKPPKRGTHASKKA-------RSDSKPGSKRQ 288
+ + E++ +R+ P+R ++A R D G++++
Sbjct: 291 AKANFDAPIYNAAAVAAEEEAEPAAAERRERPRRDEDKRERALSRLDTKRDDRHGGARKE 350
Query: 289 VLGKQSAAQNAKRPPPKKAQGGRR 360
+ ++ +RP + G RR
Sbjct: 351 DDRRDGGRRDDERPKRPQPLGQRR 374
[134][TOP]
>UniRef100_C6B2K7 RNA-binding S4 domain protein n=1 Tax=Rhizobium leguminosarum bv.
trifolii WSM1325 RepID=C6B2K7_RHILS
Length = 698
Score = 64.7 bits (156), Expect = 3e-09
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG------ 174
+REGKNRE++ L L L VNRLIR SYGPFQL L V EV + LRDQ+G
Sbjct: 231 LREGKNREIKNVLGALGLDVNRLIRISYGPFQLGDLPESHVVEVRGRTLRDQLGPRLIEE 290
Query: 175 ----------HLVDIPREQDR-----HKRKPPKRGTHASKKA--RSDSKPGSKRQVLGKQ 303
+ + E++ KR+ P+R ++A R D+K + K+
Sbjct: 291 AKANFDAPIYNTTAVAAEEEAEPAAPEKRERPRRDEDKRERALSRLDTKRDDRHGGARKE 350
Query: 304 SAAQNAKRPPPKKAQGGRRQGPPRTKR*ELSPALIADAILPRRMDAIRAQPATRRGK 474
++ R +K + + G R+ ++P A AQ A RRG+
Sbjct: 351 DDRRDGGRRDDEKPKRPQPLGQRRSANVWMAPGARPLGEKAAAKAAKNAQTARRRGE 407
[135][TOP]
>UniRef100_A6U6J3 Pseudouridine synthase n=1 Tax=Sinorhizobium medicae WSM419
RepID=A6U6J3_SINMW
Length = 576
Score = 64.7 bits (156), Expect = 3e-09
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLV--- 183
+REGKNRE++ L L L VNRLIR SYGPFQL L G V+E+ + LR+Q+G +
Sbjct: 227 LREGKNREIKNVLGALGLDVNRLIRISYGPFQLGELPIGQVQEIRGRTLREQLGPRLIAD 286
Query: 184 -----DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLG----KQSAAQNAKRPPP 336
D P D+ P+ A ++ GSKR+ G + A + +R
Sbjct: 287 AKANFDAPIYNDQSTAAEPEAEPVAD---HGKAEWGSKREKAGDKRERALARLDTRRDDG 343
Query: 337 KKAQGGRRQG 366
+ GR +G
Sbjct: 344 RPNDRGRSRG 353
[136][TOP]
>UniRef100_UPI0001903210 probable RNA-pseudouridine synthase protein, ribosomal large
subunit B n=1 Tax=Rhizobium etli 8C-3
RepID=UPI0001903210
Length = 244
Score = 64.3 bits (155), Expect = 4e-09
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+REGKNRE++ L L L VNRLIR SYGPFQL L G V EV + LRDQ+G
Sbjct: 161 LREGKNREIKNVLGALGLDVNRLIRISYGPFQLGDLPEGHVIEVRGRTLRDQLG 214
[137][TOP]
>UniRef100_Q0C3M6 Pseudouridine synthase n=1 Tax=Hyphomonas neptunium ATCC 15444
RepID=Q0C3M6_HYPNA
Length = 305
Score = 63.9 bits (154), Expect = 5e-09
Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQ---VGH 177
V + EGKNREVR+ALE++ L VNRLIR SYGPF L L+ G V+EV L +GH
Sbjct: 215 VTLTEGKNREVRKALESVGLTVNRLIRVSYGPFLLADLKPGQVDEVPPDLLETALALLGH 274
Query: 178 LVDIPREQ--DRHKRKPPKRGTHASKKAR 258
VD E+ K + +RG A K +
Sbjct: 275 EVDTAPEKPAPAAKSRLGRRGPSARVKGK 303
[138][TOP]
>UniRef100_B5ZRY2 RNA-binding S4 domain protein n=1 Tax=Rhizobium leguminosarum bv.
trifolii WSM2304 RepID=B5ZRY2_RHILW
Length = 689
Score = 63.5 bits (153), Expect = 7e-09
Identities = 32/54 (59%), Positives = 38/54 (70%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVG 174
+REGKNRE++ + L L VNRLIR SYGPFQL L G V EV + LRDQ+G
Sbjct: 227 LREGKNREIKNVMGALGLDVNRLIRISYGPFQLGDLPEGHVIEVRGRTLRDQLG 280
[139][TOP]
>UniRef100_A7HQT4 Pseudouridine synthase n=1 Tax=Parvibaculum lavamentivorans DS-1
RepID=A7HQT4_PARL1
Length = 327
Score = 63.2 bits (152), Expect = 9e-09
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
++EGKNREV+R L L L VNRLIR S+GPFQ+ L+ G +++V + L DQ+
Sbjct: 194 LKEGKNREVKRVLAELGLSVNRLIRLSFGPFQIGDLEPGDIKQVPNRVLMDQL------- 246
Query: 193 REQDRHKRKPPKRGTHASKKARSDSKP------GSKRQVLGKQSAAQNAKRPPPKKAQGG 354
G HA + A ++ +P GS + G + + A PP K
Sbjct: 247 -------------GAHAEQFAPAEVRPSKGAATGSTGKWTGGKPVGRKAGDKPPAK---- 289
Query: 355 RRQGPPRTKR*ELSPAL 405
P RTK P L
Sbjct: 290 ----PERTKPGGTKPKL 302
[140][TOP]
>UniRef100_A5FYK4 Pseudouridine synthase n=1 Tax=Acidiphilium cryptum JF-5
RepID=A5FYK4_ACICJ
Length = 247
Score = 63.2 bits (152), Expect = 9e-09
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQV 171
V + EGKNRE+R+ + L L+ RLIR +YGPFQL +L RGAV EV K LR+Q+
Sbjct: 188 VGLNEGKNREIRKVMAALGLETTRLIRIAYGPFQLGNLPRGAVAEVNPKVLREQL 242
[141][TOP]
>UniRef100_Q983N1 Pseudouridine synthase n=1 Tax=Mesorhizobium loti
RepID=Q983N1_RHILO
Length = 546
Score = 62.8 bits (151), Expect = 1e-08
Identities = 51/138 (36%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGH--LVD 186
+REGKNREV+ L L L V RLIR SYGPFQL L G V E+ + LRDQ+G + +
Sbjct: 277 LREGKNREVKNILGALGLDVTRLIRISYGPFQLEDLPEGHVLEIKGRVLRDQLGERLVEE 336
Query: 187 IPREQDRHKRKP----PKRGTHA--SKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKK-- 342
D KP P R T + R +R+ +G+ +N KR +
Sbjct: 337 SGANFDAEIAKPFSNKPVRRTEVREPEPERPKFTRDGERRPIGEGGLIKNRKRREGSRDE 396
Query: 343 AQGGRRQGPPRTKR*ELS 396
A G P R +R E S
Sbjct: 397 ALGKLSTSPDRGERPEKS 414
[142][TOP]
>UniRef100_A3WBE4 Pseudouridine synthase n=1 Tax=Erythrobacter sp. NAP1
RepID=A3WBE4_9SPHN
Length = 260
Score = 62.8 bits (151), Expect = 1e-08
Identities = 33/53 (62%), Positives = 37/53 (69%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQL 159
VE+ I EGKNREVRR LE L LKVNRLIRT+YGPF L L RG + + L
Sbjct: 196 VEMTITEGKNREVRRVLEYLGLKVNRLIRTAYGPFGLGDLPRGQAVRIRKGDL 248
[143][TOP]
>UniRef100_A5V9U5 Pseudouridine synthase n=1 Tax=Sphingomonas wittichii RW1
RepID=A5V9U5_SPHWW
Length = 286
Score = 62.4 bits (150), Expect = 2e-08
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQL 159
+E+ +REGKNREVRR LE L L+V+RLIR +YG F+L LQ G V E+ + QL
Sbjct: 222 IEMKLREGKNREVRRVLEHLGLEVSRLIRIAYGAFELGDLQPGEVGEIAQHQL 274
[144][TOP]
>UniRef100_Q1GU97 Pseudouridine synthase n=1 Tax=Sphingopyxis alaskensis
RepID=Q1GU97_SPHAL
Length = 285
Score = 62.0 bits (149), Expect = 2e-08
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQL 159
+E+ + EGKNREVRR LE L L+V+RLIRT YG F L L GAVE V R +L
Sbjct: 224 IEMTLTEGKNREVRRVLEHLGLQVSRLIRTRYGEFTLAGLDMGAVEVVPRDEL 276
[145][TOP]
>UniRef100_Q0BUZ5 Pseudouridine synthase n=1 Tax=Granulibacter bethesdensis CGDNIH1
RepID=Q0BUZ5_GRABC
Length = 251
Score = 62.0 bits (149), Expect = 2e-08
Identities = 30/55 (54%), Positives = 40/55 (72%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQV 171
V ++EGKNRE+R+ + + L V RLIR +YGPFQL L +G VEEV K LR+Q+
Sbjct: 194 VSLKEGKNREIRKVMRHIGLHVTRLIRIAYGPFQLGQLGKGEVEEVTGKVLREQL 248
[146][TOP]
>UniRef100_Q31GA0 Pseudouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2
RepID=Q31GA0_THICR
Length = 317
Score = 59.7 bits (143), Expect = 1e-07
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHLV 183
V+I+EG+NREVRR E+ ++V+RL+RT YG F L +L+RG E + KQ+ +Q+ V
Sbjct: 202 VVIKEGRNREVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRGKSEPLTWKQI-NQLLKSV 260
Query: 184 DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRRQ 363
D+P E R P + A K A ++P K K R K + RR+
Sbjct: 261 DLPEEPRPDLRNNPAK---AKKMAARHAEPFKKETGRVKYKEKGENHREEKSKPKSARRR 317
[147][TOP]
>UniRef100_Q2N9M6 Pseudouridine synthase n=1 Tax=Erythrobacter litoralis HTCC2594
RepID=Q2N9M6_ERYLH
Length = 266
Score = 58.9 bits (141), Expect = 2e-07
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQL 159
+E+ I EGKNREVRR LE L+V+RL+R +YGPFQL L RG E+ + L
Sbjct: 202 IEMTITEGKNREVRRVLEHFGLEVSRLMRVAYGPFQLGDLPRGQAVEIRKGDL 254
[148][TOP]
>UniRef100_C8WBY9 Pseudouridine synthase n=1 Tax=Zymomonas mobilis subsp. mobilis
NCIMB 11163 RepID=C8WBY9_ZYMMO
Length = 509
Score = 58.9 bits (141), Expect = 2e-07
Identities = 32/54 (59%), Positives = 38/54 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLR 162
VE+ + EG+NREVRR L L L+V+RLIR SYGPF L L GAVEEV L+
Sbjct: 446 VEMKLHEGRNREVRRVLGYLGLQVSRLIRISYGPFLLGDLPVGAVEEVDPATLK 499
[149][TOP]
>UniRef100_C5TE47 Pseudouridine synthase n=1 Tax=Zymomonas mobilis subsp. mobilis
ATCC 10988 RepID=C5TE47_ZYMMO
Length = 510
Score = 58.9 bits (141), Expect = 2e-07
Identities = 32/54 (59%), Positives = 38/54 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLR 162
VE+ + EG+NREVRR L L L+V+RLIR SYGPF L L GAVEEV L+
Sbjct: 447 VEMKLHEGRNREVRRVLGYLGLQVSRLIRISYGPFLLGDLPVGAVEEVDPATLK 500
[150][TOP]
>UniRef100_A5P779 Pseudouridine synthase n=1 Tax=Erythrobacter sp. SD-21
RepID=A5P779_9SPHN
Length = 255
Score = 58.5 bits (140), Expect = 2e-07
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEV 144
+E+ +REGKNREVRR LE L+VNRL+R YGPF L L RG E+
Sbjct: 190 IEMTLREGKNREVRRVLEHFGLEVNRLLRIGYGPFHLGDLPRGQAVEL 237
[151][TOP]
>UniRef100_C7BJ89 Pseudouridine synthase n=1 Tax=Photorhabdus asymbiotica
RepID=C7BJ89_9ENTR
Length = 310
Score = 58.2 bits (139), Expect = 3e-07
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 14/115 (12%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQ---LRDQVG 174
V + EG+NREVRR E + ++V+RLIR YG L L RG E+G +Q LR VG
Sbjct: 192 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIGLPKGLPRGGWAELGLEQTNYLRQLVG 251
Query: 175 ------HLVDIPREQDRHK----RKPPKRGTHASKKARSDSKPGSKRQVLGKQSA 309
V + R+Q R K R+ KR + + + +PGS RQ G+ +A
Sbjct: 252 LHEETVSKVAVERDQRRMKANQIRRAVKRHAQVASRPSAGKRPGSSRQNAGRTTA 306
[152][TOP]
>UniRef100_UPI000190578B putative ribosomal large subunit pseudouridine synthase B n=1
Tax=Rhizobium etli IE4771 RepID=UPI000190578B
Length = 296
Score = 57.8 bits (138), Expect = 4e-07
Identities = 40/110 (36%), Positives = 51/110 (46%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHLVDIP 192
+REGKNRE++ + L L VNRLIR SYGPFQL L G V EV
Sbjct: 218 LREGKNREIKNVMGALGLDVNRLIRISYGPFQLGDLPEGHVIEV---------------- 261
Query: 193 REQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKK 342
RG HA++ AR GS R++ +S +RP P +
Sbjct: 262 ------------RGPHAARSARPAPDRGSPRRISMHRS---TMRRPLPPR 296
[153][TOP]
>UniRef100_Q7N4A0 Pseudouridine synthase n=1 Tax=Photorhabdus luminescens subsp.
laumondii RepID=Q7N4A0_PHOLL
Length = 310
Score = 57.4 bits (137), Expect = 5e-07
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQ--------- 156
V + EG+NREVRR E + ++V+RLIR YG L L RG E+G +Q
Sbjct: 192 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIGLPKGLPRGGWTELGLEQTNYLRQLVD 251
Query: 157 LRDQVGHLVDIPREQDRHK----RKPPKRGTHASKKARSDSKPGSKRQVLGKQSA 309
L ++ V + R+Q R K R+ KR + + + +PGS RQ G+ +A
Sbjct: 252 LNEETVSKVAVGRDQRRLKANQIRRAVKRHAQVASRPSAGKRPGSSRQKAGRTTA 306
[154][TOP]
>UniRef100_Q1H048 Pseudouridine synthase n=1 Tax=Methylobacillus flagellatus KT
RepID=Q1H048_METFK
Length = 383
Score = 57.0 bits (136), Expect = 6e-07
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 23/144 (15%)
Frame = +1
Query: 4 EVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLR-----D 165
EV++REG+NREVRR E V+RLIR +GP L L+RG + +G K++
Sbjct: 208 EVILREGRNREVRRLFEAFQKPVSRLIRVRFGPVNLPPRLKRGQMIHLGAKEVTALLEWA 267
Query: 166 QVGHLVDIPRE-QDRHKRKPPKRGTHASKKARSD---------------SKPGSKRQVLG 297
++ +PR+ R K K K T ++K+R D ++ RQ LG
Sbjct: 268 ELAVPKAVPRQLSPREKEKLGKVFTPKARKSRFDPEAHLESRGPRRVTKAREEGMRQELG 327
Query: 298 KQSAAQNAKR-PPPKKAQGGRRQG 366
KQ A + ++ ++AQ RQG
Sbjct: 328 KQQAGRRSRHGAETEEAQRPSRQG 351
[155][TOP]
>UniRef100_A5WGV6 Pseudouridine synthase n=1 Tax=Psychrobacter sp. PRwf-1
RepID=A5WGV6_PSYWF
Length = 345
Score = 57.0 bits (136), Expect = 6e-07
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 12/118 (10%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHLV 183
V ++EG+NREVRR +E+ LKV+RL+RTSYG L L+ G E+ RK + + +
Sbjct: 224 VKLKEGRNREVRRLIESQGLKVSRLLRTSYGSVDLPKELRTGRFIELDRKDIHRLIDLVG 283
Query: 184 DIPRE-----------QDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAK 324
PRE ++R ++KP K ++ R+ S+ G GK ++A +
Sbjct: 284 IRPREDMGVHGKAKEKKERFQKKPMK-----ARTIRTSSRSGRASTSTGKNTSATRGR 336
[156][TOP]
>UniRef100_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797
RepID=A6C4P7_9PLAN
Length = 352
Score = 56.2 bits (134), Expect = 1e-06
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+E+ + EG+NRE+RR + + KV +L+R +GP L L+ G + +L+ ++ L
Sbjct: 198 LELTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNLGKLKTGESRRLSDTELK-KLRQL 256
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
++ D RK K A K R+ K KR G++ AA A + ++ GG++
Sbjct: 257 LNEKHSPDIRHRKGKKNA--APAKTRAPRKSVGKRS--GERGAA--AGKSVSERISGGKK 310
Query: 361 QGPPRTKR*ELSPALIADAILP----RRMDAIRAQPATRRGK 474
G R+ PA AD+ P RR+ A+ TR+GK
Sbjct: 311 TGGKRSVSTGRKPA--ADSSKPKTTGRRIIGDVAEKRTRQGK 350
[157][TOP]
>UniRef100_B9BMW5 Pseudouridine synthase n=2 Tax=Burkholderia multivorans
RepID=B9BMW5_9BURK
Length = 541
Score = 55.8 bits (133), Expect = 1e-06
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHL- 180
V + EG+NREVRR E + L V+RLIRT +GP L L+RG EE+ Q+R + +
Sbjct: 348 VALAEGRNREVRRMFEAVGLMVSRLIRTRHGPIPLPRGLKRGRWEELDEAQVRKLMATVG 407
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
+ P E+ KRG +++ + D S + + + + P++ GGRR
Sbjct: 408 LKAPSEE------KGKRGAGQAERRQPDPMQTSMGFISREPVLTTHGQLDQPRR--GGRR 459
Query: 361 QGP 369
GP
Sbjct: 460 GGP 462
[158][TOP]
>UniRef100_UPI0001845CF1 hypothetical protein PROVRUST_03831 n=1 Tax=Providencia rustigianii
DSM 4541 RepID=UPI0001845CF1
Length = 313
Score = 55.5 bits (132), Expect = 2e-06
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQ---LRDQVG 174
V + EG+NREVRR E + ++V+RLIR YG L L RG E+G +Q LR+ VG
Sbjct: 200 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIDLPKGLPRGGWTELGLEQTNYLRELVG 259
Query: 175 HLVD----IPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKK 342
V+ + E+D+ + K + + + S+P SKRQ A RP KK
Sbjct: 260 LSVETESKVAVERDQRRLKANQIRRAVKRHTQVASRPASKRQ----------ASRPTAKK 309
[159][TOP]
>UniRef100_C4UJI4 Pseudouridine synthase n=1 Tax=Yersinia ruckeri ATCC 29473
RepID=C4UJI4_YERRU
Length = 321
Score = 55.5 bits (132), Expect = 2e-06
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 14/137 (10%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRK---QLRDQVG 174
V + EG+NREVRR E + ++V+RLIR YG L L RG E+ K LR+ V
Sbjct: 186 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDINLPKGLPRGGWTELDLKATNYLRELVE 245
Query: 175 HLVD----IPREQDRHK------RKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAK 324
V+ +P E+DR + R+ KR T + + ++ + GS R+ +Q+ A
Sbjct: 246 LDVETVSKLPVEKDRRRVKANQIRRAVKRHTEVAGRQQTAGRQGSARKSSTRQNTGNTAS 305
Query: 325 RPPPKKAQGGRRQGPPR 375
P GRR+ P +
Sbjct: 306 SGAP---VSGRRRAPAK 319
[160][TOP]
>UniRef100_UPI0001905264 putative ribosomal large subunit pseudouridine synthase B n=1
Tax=Rhizobium etli GR56 RepID=UPI0001905264
Length = 277
Score = 55.1 bits (131), Expect = 2e-06
Identities = 28/44 (63%), Positives = 31/44 (70%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEV 144
+REGKNRE++ L L L VNRLIR SYGPFQL L G V EV
Sbjct: 231 LREGKNREIKNVLGALGLDVNRLIRISYGPFQLGDLPEGHVIEV 274
[161][TOP]
>UniRef100_A9ABD8 Pseudouridine synthase n=1 Tax=Burkholderia multivorans ATCC 17616
RepID=A9ABD8_BURM1
Length = 554
Score = 55.1 bits (131), Expect = 2e-06
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHL- 180
V + EG+NREVRR E + L V+RLIRT +GP L L+RG EE+ Q+R + +
Sbjct: 361 VALAEGRNREVRRMFEAVGLMVSRLIRTRHGPIPLPRGLKRGRWEELDEAQVRKLMATVG 420
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
+ P E+ KRG +++ + D S + + + + P++ GGRR
Sbjct: 421 LKAPSEE------KGKRGGGQAERRQPDPMQTSMGFISREPVLTTHGQLDQPRR--GGRR 472
Query: 361 QGP 369
GP
Sbjct: 473 GGP 475
[162][TOP]
>UniRef100_B9BE35 Pseudouridine synthase n=1 Tax=Burkholderia multivorans CGD1
RepID=B9BE35_9BURK
Length = 554
Score = 55.1 bits (131), Expect = 2e-06
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHL- 180
V + EG+NREVRR E + L V+RLIRT +GP L L+RG EE+ Q+R + +
Sbjct: 361 VALAEGRNREVRRMFEAVGLMVSRLIRTRHGPIPLPRGLKRGRWEELDEAQVRKLMATVG 420
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
+ P E+ KRG +++ + D S + + + + P++ GGRR
Sbjct: 421 LKAPSEE------KGKRGGGQAERRQPDPMQTSMGFISREPVLTTHGQLDQPRR--GGRR 472
Query: 361 QGP 369
GP
Sbjct: 473 GGP 475
[163][TOP]
>UniRef100_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacterium KB13
RepID=B6BUN1_9PROT
Length = 257
Score = 55.1 bits (131), Expect = 2e-06
Identities = 27/52 (51%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLS-LQRGAVEEVGRKQL 159
++++EG+NRE+RR +E+ +LKV+RLIRT YGP L S L+RG E+ +K L
Sbjct: 196 IILKEGRNREIRRLVESQNLKVSRLIRTRYGPLNLPSHLKRGQFMELEKKNL 247
[164][TOP]
>UniRef100_Q4UL59 Uncharacterized RNA pseudouridine synthase RF_0863 n=1
Tax=Rickettsia felis RepID=Y544_RICFE
Length = 229
Score = 55.1 bits (131), Expect = 2e-06
Identities = 27/52 (51%), Positives = 36/52 (69%)
Frame = +1
Query: 4 EVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQL 159
EV++ EGKNRE+RR E LKVN+LIR YG F + +L+ GA +E+ K L
Sbjct: 176 EVVLFEGKNREIRRIFEYFGLKVNKLIRIQYGSFTIDNLKPGAYKEINNKIL 227
[165][TOP]
>UniRef100_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0321 n=2
Tax=Rickettsia bellii RepID=Y321_RICBR
Length = 229
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRK 153
+EV++ EGKNRE+RR E LKVN+LIRT YG F+L +L+ EV +K
Sbjct: 175 LEVILFEGKNREIRRIFEHFGLKVNKLIRTEYGDFKLDNLKPNEYREVTKK 225
[166][TOP]
>UniRef100_Q0BFY6 Pseudouridine synthase n=1 Tax=Burkholderia ambifaria AMMD
RepID=Q0BFY6_BURCM
Length = 572
Score = 54.3 bits (129), Expect = 4e-06
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHL- 180
V + EG+NREVRR E L V+RLIRT +GP L L+RG EE+ Q+R + +
Sbjct: 367 VALAEGRNREVRRMFEAAGLMVSRLIRTRHGPIPLPRGLKRGRWEELDEAQVRKLMATVG 426
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
+ P E+ K + G+ +++ + D S + + + + P++ GGRR
Sbjct: 427 LKAPSEE-----KGKRGGSGPAERRQPDPMQTSMGFISREPVLTTHGQLDQPRRG-GGRR 480
Query: 361 QGP 369
GP
Sbjct: 481 GGP 483
[167][TOP]
>UniRef100_B1YP33 Pseudouridine synthase n=1 Tax=Burkholderia ambifaria MC40-6
RepID=B1YP33_BURA4
Length = 572
Score = 54.3 bits (129), Expect = 4e-06
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHL- 180
V + EG+NREVRR E L V+RLIRT +GP L L+RG EE+ Q+R + +
Sbjct: 367 VALAEGRNREVRRMFEAAGLMVSRLIRTRHGPIPLPRGLKRGRWEELDEAQVRKLMATVG 426
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
+ P E+ K + G+ +++ + D S + + + + P++ GGRR
Sbjct: 427 LKAPSEE-----KGKRGGSGPAERRQPDPMQTSMGFISREPVLTTHGQLDQPRRG-GGRR 480
Query: 361 QGP 369
GP
Sbjct: 481 GGP 483
[168][TOP]
>UniRef100_C3X1E1 Pseudouridine synthase n=1 Tax=Oxalobacter formigenes HOxBLS
RepID=C3X1E1_OXAFO
Length = 510
Score = 54.3 bits (129), Expect = 4e-06
Identities = 47/146 (32%), Positives = 62/146 (42%), Gaps = 26/146 (17%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEV------------- 144
V I EG+NREVRR E + L V+RLIRT YG L SL+RG +E+
Sbjct: 354 VTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDELEENAVRNLLRLSG 413
Query: 145 ----------GRKQLRDQVGHLVDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVL 294
G+ + R+ G D P+ Q R+ +G H K RQ
Sbjct: 414 LDNKDDKKTQGKTRSRNASGQYPDFPKSQSLSIRELQLQGQHQKKSPGGQKGSPRNRQPD 473
Query: 295 GKQSAAQNA--KRPPPKKAQGGRRQG 366
Q+A A + PPK G R +G
Sbjct: 474 PLQTAFGYAGMGQNPPKGGTGQRARG 499
[169][TOP]
>UniRef100_B1T1I0 Pseudouridine synthase n=1 Tax=Burkholderia ambifaria MEX-5
RepID=B1T1I0_9BURK
Length = 427
Score = 54.3 bits (129), Expect = 4e-06
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHL- 180
V + EG+NREVRR E L V+RLIRT +GP L L+RG EE+ Q+R + +
Sbjct: 222 VALAEGRNREVRRMFEAAGLMVSRLIRTRHGPIPLPRGLKRGRWEELDEAQVRKLMATVG 281
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
+ P E+ K + G+ +++ + D S + + + + P++ GGRR
Sbjct: 282 LKAPSEE-----KGKRGGSGPAERRQPDPMQTSMGFISREPVLTTHGQLDQPRRG-GGRR 335
Query: 361 QGP 369
GP
Sbjct: 336 GGP 338
[170][TOP]
>UniRef100_B1FGF3 Pseudouridine synthase n=1 Tax=Burkholderia ambifaria IOP40-10
RepID=B1FGF3_9BURK
Length = 427
Score = 54.3 bits (129), Expect = 4e-06
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHL- 180
V + EG+NREVRR E L V+RLIRT +GP L L+RG EE+ Q+R + +
Sbjct: 222 VALAEGRNREVRRMFEAAGLMVSRLIRTRHGPIPLPRGLKRGRWEELDEAQVRKLMATVG 281
Query: 181 VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGRR 360
+ P E+ K + G+ +++ + D S + + + + P++ GGRR
Sbjct: 282 LKAPSEE-----KGKRGGSGPAERRQPDPMQTSMGFISREPVLTTHGQLDQPRRG-GGRR 335
Query: 361 QGP 369
GP
Sbjct: 336 GGP 338
[171][TOP]
>UniRef100_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica
RepID=Q7UUP0_RHOBA
Length = 395
Score = 53.9 bits (128), Expect = 5e-06
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL 180
+E+ ++EGKNRE+RR L KV +L R + GP +L + RGA RK RD+V L
Sbjct: 199 MEIRLKEGKNREIRRILARFGHKVQQLRRVAIGPLKLGDVPRGAY----RKLTRDEVDKL 254
Query: 181 -VDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGR 357
I + K PP R ASK++ G+ R V K + + A + K + R
Sbjct: 255 RRSIDAAEKAAKTAPPAR--PASKQSIKRRPGGASRNVAAKGTGGRPAFKGGRKAVKKSR 312
[172][TOP]
>UniRef100_A9R989 Pseudouridine synthase n=1 Tax=Yersinia pestis Angola
RepID=A9R989_YERPG
Length = 344
Score = 53.9 bits (128), Expect = 5e-06
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRK---QLRDQVG 174
V + EG+NREVRR E + ++V+RLIR YG L L RG E+ K LR+ V
Sbjct: 212 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDINLPKGLPRGGWTELDLKATNYLRELVE 271
Query: 175 HLVD----IPREQDRHK------RKPPKRGTHASKK----ARSDSKPGSKRQVLGKQSAA 312
V+ +P E+DR + R+ KR T S + + ++ GS RQ +G + A
Sbjct: 272 LDVETVSKLPVEKDRRRVKANQIRRAVKRHTEVSGRQVAGRQGSARKGSTRQNVGNAAPA 331
Query: 313 QNAKRPPPKKAQG 351
A R K +G
Sbjct: 332 ATASRRSGPKKRG 344
[173][TOP]
>UniRef100_A4TJ60 Pseudouridine synthase n=10 Tax=Yersinia pestis RepID=A4TJ60_YERPP
Length = 344
Score = 53.9 bits (128), Expect = 5e-06
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRK---QLRDQVG 174
V + EG+NREVRR E + ++V+RLIR YG L L RG E+ K LR+ V
Sbjct: 212 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDINLPKGLPRGGWTELDLKATNYLRELVE 271
Query: 175 HLVD----IPREQDRHK------RKPPKRGTHASKK----ARSDSKPGSKRQVLGKQSAA 312
V+ +P E+DR + R+ KR T S + + ++ GS RQ +G + A
Sbjct: 272 LDVETVSKLPVEKDRRRVKANQIRRAVKRHTEVSGRQVAGRQGSARKGSTRQNVGNAAPA 331
Query: 313 QNAKRPPPKKAQG 351
A R K +G
Sbjct: 332 ATASRRSGPKKRG 344
[174][TOP]
>UniRef100_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645
RepID=A3ZQL4_9PLAN
Length = 517
Score = 53.9 bits (128), Expect = 5e-06
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Frame = +1
Query: 1 VEVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEV---GRKQLRDQV 171
+EV++ EGKNRE+RR + + KV RL R + GP +L + GA E+ K LRD
Sbjct: 191 LEVILDEGKNREIRRLMAKIGHKVLRLKRIAMGPLRLGEMPEGAFRELKSAETKALRDAA 250
Query: 172 -GHLVDIPREQDRHKRKPP--KRG-----THASKKARSDSKP---GSKRQVLGKQSAAQN 318
G P++ K P + G T K R+ +KP G+K + GK + A +
Sbjct: 251 FGVGAGKPKKPKPRKSSTPGEREGPIFPETKTIAKGRAGAKPTETGAKSRATGKPTGAAS 310
Query: 319 AKRPPPKKAQG 351
R KK+ G
Sbjct: 311 KDRSTYKKSAG 321
[175][TOP]
>UniRef100_Q8ZEG0 Ribosomal large subunit pseudouridine synthase B n=7 Tax=Yersinia
RepID=RLUB_YERPE
Length = 318
Score = 53.9 bits (128), Expect = 5e-06
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRK---QLRDQVG 174
V + EG+NREVRR E + ++V+RLIR YG L L RG E+ K LR+ V
Sbjct: 186 VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDINLPKGLPRGGWTELDLKATNYLRELVE 245
Query: 175 HLVD----IPREQDRHK------RKPPKRGTHASKK----ARSDSKPGSKRQVLGKQSAA 312
V+ +P E+DR + R+ KR T S + + ++ GS RQ +G + A
Sbjct: 246 LDVETVSKLPVEKDRRRVKANQIRRAVKRHTEVSGRQVAGRQGSARKGSTRQNVGNAAPA 305
Query: 313 QNAKRPPPKKAQG 351
A R K +G
Sbjct: 306 ATASRRSGPKKRG 318
[176][TOP]
>UniRef100_Q0A9P6 Pseudouridine synthase n=1 Tax=Alkalilimnicola ehrlichii MLHE-1
RepID=Q0A9P6_ALHEH
Length = 290
Score = 53.5 bits (127), Expect = 7e-06
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Frame = +1
Query: 4 EVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRDQVGHL- 180
+V +REG+NREVRR E+ LKV+RLIR YGP +SL RG R QV L
Sbjct: 201 QVTLREGRNREVRRLWESQGLKVSRLIRVRYGP---VSLPRGLRRGEHRPLREGQVAALC 257
Query: 181 ----VDIPREQDRHKRKPPKRGTHASKKARSDSK 270
++ ++D KRK P+ H ++ R ++
Sbjct: 258 QAVGLEHETQKDNDKRKAPR---HKGRRGRRPTR 288
[177][TOP]
>UniRef100_A8GNV3 Pseudouridine synthase n=1 Tax=Rickettsia akari str. Hartford
RepID=A8GNV3_RICAH
Length = 229
Score = 53.5 bits (127), Expect = 7e-06
Identities = 26/54 (48%), Positives = 37/54 (68%)
Frame = +1
Query: 4 EVMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRGAVEEVGRKQLRD 165
EV++ EGKNRE+RR E LKV++LIR YG F + +L+ GA +E+ K L +
Sbjct: 176 EVVLFEGKNREIRRIFEYFGLKVHKLIRIQYGSFTIDNLKPGAYKEINNKILAE 229
[178][TOP]
>UniRef100_A4G7T1 Pseudouridine synthase n=1 Tax=Herminiimonas arsenicoxydans
RepID=A4G7T1_HERAR
Length = 538
Score = 53.5 bits (127), Expect = 7e-06
Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRD--QVGH 177
V I EG+NREVRR E + L V+RLIRT YG L +L+RG EE+ +RD +
Sbjct: 357 VTIGEGRNREVRRMFEAIGLTVSRLIRTRYGTLTLPKNLKRGRWEEMEEHAVRDLLAMSG 416
Query: 178 LVDIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQV-----LGKQSAAQNAKRPPPKK 342
L + R P + ++ R D+ G R LG Q Q P
Sbjct: 417 LEKKSVDGAPKGRNSPADRQNGNRAPRVDNGMGLPRSPSQWGNLGGQGRPQGQNGKP--- 473
Query: 343 AQGGRRQGPPRTKR 384
A G + QG PR+++
Sbjct: 474 AGGRQGQGQPRSRQ 487
[179][TOP]
>UniRef100_B4EW31 Pseudouridine synthase n=2 Tax=Proteus mirabilis RepID=B4EW31_PROMH
Length = 308
Score = 53.5 bits (127), Expect = 7e-06
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQ--------- 156
V + EG+NREVRR E + ++V+RLIR YG L L RG E+G Q
Sbjct: 192 VSLTEGRNREVRRMWEAVGVQVSRLIRVRYGDIDLPKGLPRGGWVELGLNQINYLRQLVE 251
Query: 157 LRDQVGHLVDIPREQDRHKRKPPKRGT--HASKKARSDSKPGSKRQVLGKQSAAQNAK 324
L D+ V + ++Q R K +R H AR+ + P +KR +QSA +K
Sbjct: 252 LNDETVTKVAVEKDQRRIKANQIRRAVKRHTKISARTSTSP-AKRASSRRQSAGSKSK 308
[180][TOP]
>UniRef100_Q2SD40 Pseudouridine synthase n=1 Tax=Hahella chejuensis KCTC 2396
RepID=Q2SD40_HAHCH
Length = 323
Score = 53.1 bits (126), Expect = 9e-06
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQR-GAVEEVGRKQ---LRDQVG 174
V+++EG+NREVRR E+ + V+RL R YG L S R G E G+K L + G
Sbjct: 191 VVLQEGRNREVRRLWESQGVTVSRLKRVRYGYMFLPSRVRLGNWEMAGQKDVNVLYEMAG 250
Query: 175 HLVD-----IPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPK 339
P +++ +R+ K G ASK S+ + G+ R K +AA + +R P
Sbjct: 251 MQPKTVASLTPHTREKIQRQQGKSG--ASKPKPSNGRTGA-RAPARKPAAASDERRSAPL 307
Query: 340 KAQGGRRQGPPRTK 381
+ GR+ GP R K
Sbjct: 308 RHSTGRKPGPGRRK 321
[181][TOP]
>UniRef100_B2T378 Pseudouridine synthase n=1 Tax=Burkholderia phytofirmans PsJN
RepID=B2T378_BURPP
Length = 626
Score = 53.1 bits (126), Expect = 9e-06
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHL- 180
V + EG+NREVRR E L V+RLIRT +GP L L+RG EE+ Q+R + +
Sbjct: 392 VALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALMASVG 451
Query: 181 VDIPREQDRHKRKPPKR 231
+ P E+ +R+ P+R
Sbjct: 452 LKAPTEEKGGRREAPER 468
[182][TOP]
>UniRef100_B1XXL8 Pseudouridine synthase n=1 Tax=Leptothrix cholodnii SP-6
RepID=B1XXL8_LEPCP
Length = 736
Score = 53.1 bits (126), Expect = 9e-06
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Frame = +1
Query: 7 VMIREGKNREVRRALETLDLKVNRLIRTSYGPFQL-LSLQRGAVEEVGRKQLRDQVGHLV 183
V+I EG+NREVRR + + L V+RLIR Y L L+RG E+ +R Q+ +
Sbjct: 470 VVITEGRNREVRRLFDAVGLTVSRLIRIRYATVVLPRGLKRGVWVELDDNDVR-QIRQIA 528
Query: 184 DIPREQDRHKRKPPKRGTHASKKARSDSKPGSKRQVLGKQSAAQNAKRPPPKKAQGGR 357
+ PR + + + R A + R +PG + GK + P+ +QGG+
Sbjct: 529 NGPRAERGEREERGPRADRAERGPRDGQQPG---RGAGKGKGGGQGQGQGPQMSQGGQ 583
[183][TOP]
>UniRef100_A0CY18 Chromosome undetermined scaffold_30, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0CY18_PARTE
Length = 337
Score = 53.1 bits (126), Expect = 9e-06
Identities = 21/39 (53%), Positives = 32/39 (82%)
Frame = +1
Query: 13 IREGKNREVRRALETLDLKVNRLIRTSYGPFQLLSLQRG 129
+ +GKNRE+R+ ++ DL+VNRLIR SYGP++L+ L+ G
Sbjct: 220 LEQGKNREIRKVMQKFDLRVNRLIRQSYGPYKLMGLKPG 258