[UP]
[1][TOP] >UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis RepID=O04142_PORYE Length = 1685 Score = 342 bits (877), Expect = 1e-92 Identities = 178/178 (100%), Positives = 178/178 (100%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ Sbjct: 914 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 973 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS Sbjct: 974 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 1033 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE Sbjct: 1034 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 1091 [2][TOP] >UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera RepID=O09451_9FLOR Length = 1732 Score = 194 bits (493), Expect = 3e-48 Identities = 105/181 (58%), Positives = 126/181 (69%), Gaps = 3/181 (1%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA---LKELSE 172 SDL P ++++GV +LL RTRVL ++A ++ A E + P DE + L + Sbjct: 897 SDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPGMEEDDEGNPIDEKPTMVDPLMK 956 Query: 173 TAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATA 352 AQ NATLLFQ+H+R+ LA K ++ HRLT KAF WLL E+ENRF GE +GA A Sbjct: 957 EAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLWLLGEVENRFMMCRVAPGENIGAIA 1016 Query: 353 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDA 532 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK TKTPSL VYL+ D Sbjct: 1017 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKNTKTPSLTVYLKSQYAGDK 1076 Query: 533 E 535 E Sbjct: 1077 E 1077 [3][TOP] >UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata RepID=Q9AXN0_9RHOD Length = 1746 Score = 187 bits (476), Expect = 3e-46 Identities = 106/191 (55%), Positives = 128/191 (67%), Gaps = 13/191 (6%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLT-------------SDEDAEVDAIAREMLPPDGSASGP 142 SDL+P I++GV++LL R V+ D+ AEVD Sbjct: 973 SDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGDQVAEVDT--------------- 1017 Query: 143 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALA 322 + ++L+ AQ NATLL+ +H+RA LASKV+L E+RL +KAF LL EIENRF A Sbjct: 1018 -NSVSRQLAVEAQENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLLGEIENRFLHAKC 1076 Query: 323 PAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVV 502 P GEM+GA A QSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K KTPSL V Sbjct: 1077 PPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKHCKTPSLTV 1136 Query: 503 YLRGDAVHDAE 535 YLRG+A DAE Sbjct: 1137 YLRGEAARDAE 1147 [4][TOP] >UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia uvarioides RepID=Q9AXN1_9FLOR Length = 1712 Score = 181 bits (460), Expect = 2e-44 Identities = 99/170 (58%), Positives = 123/170 (72%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL+P ++ +G+++LL RTRV+ +D + + + + +G + A ET Q Sbjct: 898 SDLTPVQVWKGIKMLLKRTRVVEIGDDQDDEDVDDGVTDENGEMIDRKPVADPLTLET-Q 956 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT++FQ+HVR+ LA K V+ HRL AF W+L EIENRF A+A GE +GA AAQS Sbjct: 957 ENATMIFQIHVRSMLACKQVMVRHRLDINAFLWILGEIENRFLGAIAAPGENIGAIAAQS 1016 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK TKTPSL VYLR Sbjct: 1017 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVSKHTKTPSLTVYLR 1066 [5][TOP] >UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019270E9 Length = 2014 Score = 179 bits (453), Expect = 1e-43 Identities = 98/178 (55%), Positives = 121/178 (67%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP K++ ++ L R V+ ++ +LS+ AQ Sbjct: 1002 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E+RF A A GEMVGA AAQS Sbjct: 1035 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQAARDAE 1152 [6][TOP] >UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 1 n=1 Tax=Hydra magnipapillata RepID=UPI00019270BB Length = 2041 Score = 179 bits (453), Expect = 1e-43 Identities = 98/178 (55%), Positives = 121/178 (67%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP K++ ++ L R V+ ++ +LS+ AQ Sbjct: 1003 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1035 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E+RF A A GEMVGA AAQS Sbjct: 1036 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQS 1095 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE Sbjct: 1096 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQAARDAE 1153 [7][TOP] >UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum RepID=Q30BD9_9EUKA Length = 1852 Score = 176 bits (445), Expect = 1e-42 Identities = 100/178 (56%), Positives = 120/178 (67%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P I++GV LL + V+ ++ V+A Q Sbjct: 989 SDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEA---------------------------Q 1021 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT+LFQ+ VR+ LASK VL+E+RLT AF WLL EIE+RF QA+A GEMVGA AAQS Sbjct: 1022 ANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLLGEIESRFLQAIANPGEMVGAIAAQS 1081 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+K+ KTPSLVVYL+ D+E Sbjct: 1082 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKKVKTPSLVVYLKEYCRRDSE 1139 [8][TOP] >UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio RepID=UPI0000546D90 Length = 1972 Score = 174 bits (441), Expect = 4e-42 Identities = 94/178 (52%), Positives = 120/178 (67%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P+++V GV+ L + ++ D+ +LS AQ Sbjct: 999 TDLNPARVVDGVKELSKKLVIVNGDD---------------------------QLSRQAQ 1031 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L SK + E RL+ +AF WLL EIE +F Q++A GEMVGA AAQS Sbjct: 1032 ENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQS 1091 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A DAE Sbjct: 1092 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAE 1149 [9][TOP] >UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SF83_TETNG Length = 1745 Score = 173 bits (438), Expect = 8e-42 Identities = 98/186 (52%), Positives = 122/186 (65%), Gaps = 8/186 (4%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK------- 160 +DLSP ++V G+ + + S +IA SG + + K Sbjct: 876 TDLSPLRVVEGILSSVSLNEICCSPPFTLNISIADIQFEHVFGLSGTHELSKKLVIVNGD 935 Query: 161 -ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEM 337 LS AQ NATLLF +H+R++L SK + E RL+ +AF WLL EIE +F Q++A GEM Sbjct: 936 DPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEM 995 Query: 338 VGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517 VGA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G Sbjct: 996 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQ 1055 Query: 518 AVHDAE 535 A DAE Sbjct: 1056 AARDAE 1061 [10][TOP] >UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis palmarum RepID=O01375_9BILA Length = 631 Score = 172 bits (437), Expect = 1e-41 Identities = 96/178 (53%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++ G+ L + V+ S ED +S+ AQ Sbjct: 207 TDLSPVRVIEGIRELSKKL-VIVSGED--------------------------RISKQAQ 239 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK V S H+L +AF WLL EIE+RF+QA+A GEMVGA AAQS Sbjct: 240 YNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAQPGEMVGALAAQS 299 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +YL G A DAE Sbjct: 300 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIYLTGAAARDAE 357 [11][TOP] >UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara RepID=A9QMS7_9BILA Length = 407 Score = 172 bits (437), Expect = 1e-41 Identities = 97/178 (54%), Positives = 120/178 (67%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP K+++GV+ L R V+ S ED ++S+ AQ Sbjct: 211 TDLSPLKVIQGVKDLTSRL-VIVSGED--------------------------KISQQAQ 243 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + +H+L +AF WLL EIE +F QA+A GEMVGA AAQS Sbjct: 244 YNATLLMNILLRSTLCSKRLAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQS 303 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE Sbjct: 304 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKNPKTPSLTVFLQGGAAKDAE 361 [12][TOP] >UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A92 Length = 1714 Score = 172 bits (436), Expect = 1e-41 Identities = 94/178 (52%), Positives = 116/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++V G L + ++ D+ LS AQ Sbjct: 980 TDLSPLRVVEGTHELSKKLVIVNGDDP---------------------------LSRQAQ 1012 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L SK + E RL+ +AF WLL EIE +F Q++A GEMVGA AAQS Sbjct: 1013 QNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQS 1072 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A DAE Sbjct: 1073 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAE 1130 [13][TOP] >UniRef100_Q6JU03 RNA polymerase II largest subunit (Fragment) n=1 Tax=Podura aquatica RepID=Q6JU03_9HEXA Length = 306 Score = 172 bits (436), Expect = 1e-41 Identities = 97/178 (54%), Positives = 116/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++V GVE LL + V+ D+ +S+ A Sbjct: 10 TDLSPFRVVEGVEDLLKKCIVVNGDDP---------------------------MSQKAN 42 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VR++L S+ V E RLT +AF WL+ EIE RFQQAL GEMVGA AAQS Sbjct: 43 ANATLLFQCLVRSTLCSRRVAEEFRLTTEAFEWLIGEIETRFQQALVQPGEMVGALAAQS 102 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVT GVPRL+EIIN+SKR K PSL V+L G A DAE Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTXGVPRLKEIINISKRPKAPSLTVFLTGAAARDAE 160 [14][TOP] >UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN Length = 1935 Score = 172 bits (436), Expect = 1e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 967 SDLHPIKVVEGVKKLSKKLVIVNGDDP---------------------------LSRQAQ 999 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1000 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1059 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1060 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1117 [15][TOP] >UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase II subunit A) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Equus caballus RepID=UPI0001796DD3 Length = 1834 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [16][TOP] >UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2 Length = 1970 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [17][TOP] >UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648 Length = 1913 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [18][TOP] >UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2C Length = 1888 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [19][TOP] >UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2B Length = 1892 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154 [20][TOP] >UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2A Length = 1896 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154 [21][TOP] >UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B29 Length = 1891 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 971 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1003 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1004 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1063 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1064 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1121 [22][TOP] >UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B28 Length = 1908 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 988 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1020 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1021 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1080 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1081 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1138 [23][TOP] >UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 18 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B27 Length = 1831 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [24][TOP] >UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 17 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B26 Length = 1684 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 992 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1024 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1025 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1084 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1085 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1142 [25][TOP] >UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 16 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B25 Length = 1752 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 992 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1024 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1025 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1084 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1085 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1142 [26][TOP] >UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B24 Length = 1924 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154 [27][TOP] >UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 14 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B23 Length = 1653 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 975 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1007 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1008 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1067 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1068 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1125 [28][TOP] >UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 13 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B22 Length = 1722 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 975 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1007 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1008 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1067 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1068 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1125 [29][TOP] >UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B21 Length = 1922 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [30][TOP] >UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B20 Length = 1923 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1003 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1035 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1036 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1095 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1096 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1153 [31][TOP] >UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 10 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1F Length = 1840 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 998 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1031 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1148 [32][TOP] >UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 9 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1E Length = 1851 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 998 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1031 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1148 [33][TOP] >UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris RepID=UPI00005A0B1D Length = 1764 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1020 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1052 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1053 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1112 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1113 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1170 [34][TOP] >UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 8 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1C Length = 1719 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 996 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1028 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1029 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1088 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1089 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1146 [35][TOP] >UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 7 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1B Length = 1858 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 996 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1028 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1029 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1088 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1089 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1146 [36][TOP] >UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1A Length = 1767 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 990 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1022 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1023 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1082 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1083 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1140 [37][TOP] >UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 5 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B19 Length = 1693 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 988 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1020 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1021 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1080 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1081 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1138 [38][TOP] >UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B17 Length = 1788 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [39][TOP] >UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B16 Length = 1922 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [40][TOP] >UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus RepID=UPI0001B7A25C Length = 1968 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154 [41][TOP] >UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus RepID=UPI0001B7A25B Length = 1932 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [42][TOP] >UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8 Length = 1970 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [43][TOP] >UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus familiaris RepID=UPI0001951285 Length = 1969 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [44][TOP] >UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE Length = 1966 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [45][TOP] >UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae RepID=Q84KP6_CYAME Length = 1819 Score = 172 bits (435), Expect = 2e-41 Identities = 96/170 (56%), Positives = 113/170 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P +I++GV +LL R V+ D+ ELS AQ Sbjct: 993 SDLHPRQIIQGVRVLLQRCVVVPGDD---------------------------ELSREAQ 1025 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NA LLF HVRA LA+K VL HRL KAF WLL EIE RF +A A GEMVGA AAQS Sbjct: 1026 RNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLLGEIETRFVRARATPGEMVGAVAAQS 1085 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INV+++ KTPS+ VYL+ Sbjct: 1086 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVARQAKTPSVTVYLK 1135 [46][TOP] >UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides dermatitica RepID=A9QMG4_9PELO Length = 478 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 117/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 S L+P K+V GV+ L H+ ++ D+ +S+ AQ Sbjct: 193 SSLNPLKVVSGVKELSHKLVIVCGDD---------------------------RISKQAQ 225 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + +HRL + F WLL EIE+RF QA+A GEMVGA AAQS Sbjct: 226 YNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQS 285 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE Sbjct: 286 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGGAAKDAE 343 [47][TOP] >UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera strongyloides dermatitica RepID=A9QMF0_9PELO Length = 633 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 117/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 S L+P K+V GV+ L H+ ++ D+ +S+ AQ Sbjct: 212 SSLNPLKVVSGVKELSHKLVIVCGDD---------------------------RISKQAQ 244 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + +HRL + F WLL EIE+RF QA+A GEMVGA AAQS Sbjct: 245 YNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQS 304 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE Sbjct: 305 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGGAAKDAE 362 [48][TOP] >UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN Length = 1970 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [49][TOP] >UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus RepID=RPB1_MOUSE Length = 1970 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [50][TOP] >UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires RepID=RPB1_HUMAN Length = 1970 Score = 172 bits (435), Expect = 2e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [51][TOP] >UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis RepID=B4MAN9_DROVI Length = 1889 Score = 171 bits (434), Expect = 2e-41 Identities = 94/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++RGV+ LL R ++T ++ +S+ A Sbjct: 994 TDLSPMRVIRGVKGLLERCVIVTGND---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [52][TOP] >UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis RepID=B4L732_DROMO Length = 1889 Score = 171 bits (434), Expect = 2e-41 Identities = 94/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++RGV+ LL R ++T ++ +S+ A Sbjct: 994 TDLSPMRVIRGVKGLLERCVIVTGND---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [53][TOP] >UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi RepID=B4JXA6_DROGR Length = 1889 Score = 171 bits (434), Expect = 2e-41 Identities = 94/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++RGV LL+R ++T ++ +S+ A Sbjct: 994 TDLSPMRVIRGVSDLLNRCVIVTGND---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [54][TOP] >UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata RepID=P91819_ZELPU Length = 629 Score = 171 bits (433), Expect = 3e-41 Identities = 96/177 (54%), Positives = 117/177 (66%) Frame = +2 Query: 5 DLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 184 DL+P ++V GV L ++ V+ S ED +S+ AQ Sbjct: 205 DLNPLRVVEGVREL-NKKLVIVSGED--------------------------RISKQAQY 237 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 NATLL + +R++L SK V H+L +AF W+L EIE RF QA+A GEMVGA AAQS+ Sbjct: 238 NATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSL 297 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL ++L+G A DAE Sbjct: 298 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTIFLQGQAAKDAE 354 [55][TOP] >UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus RepID=A9QMF6_PRIPA Length = 583 Score = 171 bits (433), Expect = 3e-41 Identities = 87/124 (70%), Positives = 102/124 (82%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + VR++L SK + +HRL +AF WLL EIE RFQQA+A GEMVG Sbjct: 201 ISKQAQYNATLLMNILVRSTLCSKQLAEKHRLNSEAFEWLLGEIETRFQQAIAQPGEMVG 260 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL+G A Sbjct: 261 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKQPKTPSLTVYLQGAAA 320 Query: 524 HDAE 535 DAE Sbjct: 321 KDAE 324 [56][TOP] >UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1 Tax=Drosophila simulans RepID=Q1WKU2_DROSI Length = 746 Score = 171 bits (432), Expect = 4e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 136 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 168 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 228 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286 [57][TOP] >UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia RepID=B4IK28_DROSE Length = 1887 Score = 171 bits (432), Expect = 4e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 994 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [58][TOP] >UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster subgroup RepID=A9YGC1_DROME Length = 247 Score = 171 bits (432), Expect = 4e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 51 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 83 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 84 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 143 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 144 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 201 [59][TOP] >UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster RepID=A9UNH9_DROME Length = 1887 Score = 171 bits (432), Expect = 4e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 994 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [60][TOP] >UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila melanogaster RepID=RPB1_DROME Length = 1887 Score = 171 bits (432), Expect = 4e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 994 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [61][TOP] >UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179348F Length = 1862 Score = 170 bits (431), Expect = 5e-41 Identities = 97/178 (54%), Positives = 120/178 (67%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P K+V GV+ LL + V+ + ED ELS+ A Sbjct: 995 TDLNPIKVVNGVKKLLDKC-VIVAGED--------------------------ELSKKAN 1027 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VR++L +K+V RL+ +AF WL+ EIENRF+QA A GEMVGA AAQS Sbjct: 1028 KNATLLFQCLVRSTLCTKLVSENFRLSSEAFEWLVGEIENRFKQAQAQPGEMVGALAAQS 1087 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1088 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1145 [62][TOP] >UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E658E Length = 1628 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 116/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++V G L + ++ D+ LS+ AQ Sbjct: 1000 TDLSPLRVVEGTHDLSKKLVIVNGDDP---------------------------LSKQAQ 1032 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L SK + E RL+ +AF WLL EIE +F ++A GEMVGA AAQS Sbjct: 1033 QNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNHSIAHPGEMVGALAAQS 1092 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A DAE Sbjct: 1093 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAE 1150 [63][TOP] >UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura RepID=Q9XZU9_DROSU Length = 1889 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T + +S+ A Sbjct: 994 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [64][TOP] >UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS Length = 1811 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T + +S+ A Sbjct: 916 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 948 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 949 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1008 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1009 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1066 [65][TOP] >UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis RepID=Q9XZS2_DROMD Length = 1889 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T + +S+ A Sbjct: 994 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [66][TOP] >UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche RepID=Q9XZS1_DROGU Length = 1889 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T + +S+ A Sbjct: 994 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [67][TOP] >UniRef100_Q9NJI9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tanystylum orbiculare RepID=Q9NJI9_9CHEL Length = 256 Score = 170 bits (431), Expect = 5e-41 Identities = 97/178 (54%), Positives = 116/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++ GVE L+ + ++ D+ LS A Sbjct: 10 TDLSPLRVIHGVEDLVKKLVIVPGDD---------------------------RLSLQAN 42 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L SK V E RL+ +AF WLL EI+ RFQQA GEMVGA AAQS Sbjct: 43 ENATLLFQALLRSTLCSKKVAEEFRLSTEAFDWLLGEIDTRFQQAQVMPGEMVGALAAQS 102 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLTGAAARDAE 160 [68][TOP] >UniRef100_Q9BNQ3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Peripatus sp. Per2 RepID=Q9BNQ3_9BILA Length = 300 Score = 170 bits (431), Expect = 5e-41 Identities = 95/178 (53%), Positives = 115/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL+P +++ GV L R ++ ++ +S+ AQ Sbjct: 10 SDLNPLRVIEGVRDLSKRLIIVPGED---------------------------RISKQAQ 42 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + VRA+L SK V EH+L+ +AF WLL EIE RF QA GEMVGA AAQS Sbjct: 43 ENATLLMNILVRATLCSKRVTKEHKLSTEAFEWLLGEIETRFAQAQGQPGEMVGALAAQS 102 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A DAE Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGQAARDAE 160 [69][TOP] >UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q29IN2_DROPS Length = 1889 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T + +S+ A Sbjct: 994 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [70][TOP] >UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta RepID=Q25203_9CAEN Length = 1343 Score = 170 bits (431), Expect = 5e-41 Identities = 96/178 (53%), Positives = 113/178 (63%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P +V GV L R ++ ++ +S+ A Sbjct: 916 SDLDPINVVSGVRDLCQRLTIVEGED---------------------------MISKQAN 948 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L +K V EHRL+ AF WLL EIE RFQQA A GEMVGA AAQS Sbjct: 949 ENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHPGEMVGALAAQS 1008 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL G A DAE Sbjct: 1009 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLNGPAARDAE 1066 [71][TOP] >UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1 Tax=Drosophila erecta RepID=Q1WKU4_DROER Length = 760 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 136 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 168 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 228 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286 [72][TOP] >UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1 Tax=Drosophila orena RepID=Q1WKU3_DROOR Length = 750 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 136 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 168 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 228 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286 [73][TOP] >UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster subgroup RepID=Q1WKU0_DROYA Length = 766 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 136 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 168 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 228 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286 [74][TOP] >UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba RepID=B4PY98_DROYA Length = 1889 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 994 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [75][TOP] >UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni RepID=B4NDK9_DROWI Length = 1890 Score = 170 bits (431), Expect = 5e-41 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV LL R ++T ++ +S+ A Sbjct: 994 TDLSPMRVIKGVRGLLERCVIVTGND---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VR++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [76][TOP] >UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis RepID=B4H2R8_DROPE Length = 1804 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T + +S+ A Sbjct: 994 TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [77][TOP] >UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta RepID=B3NUC1_DROER Length = 1889 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 994 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [78][TOP] >UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae RepID=B3MQ29_DROAN Length = 1889 Score = 170 bits (431), Expect = 5e-41 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL R ++T ++ +S+ A Sbjct: 994 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVGA AAQS Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144 [79][TOP] >UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis domestica RepID=UPI0000F2BF13 Length = 1932 Score = 170 bits (430), Expect = 7e-41 Identities = 96/178 (53%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + V+ + ED LS AQ Sbjct: 1002 SDLHPIKVVDGVKELSKKL-VIVNGEDP--------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [80][TOP] >UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis domestica RepID=UPI0000F2BF12 Length = 1970 Score = 170 bits (430), Expect = 7e-41 Identities = 96/178 (53%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+V GV+ L + V+ + ED LS AQ Sbjct: 1002 SDLHPIKVVDGVKELSKKL-VIVNGEDP--------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [81][TOP] >UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus RepID=A9QMH1_9BILA Length = 616 Score = 170 bits (430), Expect = 7e-41 Identities = 95/177 (53%), Positives = 116/177 (65%) Frame = +2 Query: 5 DLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 184 DL+P +++ GV L + ++ S ED +S+ AQ Sbjct: 212 DLNPVRVIEGVRELSKKL-IIVSGED--------------------------RISKQAQY 244 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 NATLL + +R++L SK V H+L +AF W+L EIE RF QA+A GEMVGA AAQS+ Sbjct: 245 NATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSL 304 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL V+L+G A DAE Sbjct: 305 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTVFLQGQAAKDAE 361 [82][TOP] >UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus regenfussi RepID=A9QMG9_9BILA Length = 620 Score = 170 bits (430), Expect = 7e-41 Identities = 86/124 (69%), Positives = 102/124 (82%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + +R++L SK V +HRL ++AF WL+ EIE RF QA+A GEMVG Sbjct: 230 ISKQAQFNATLLMNILLRSTLCSKQVAEKHRLNQEAFEWLIGEIETRFXQAIAQPGEMVG 289 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 290 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAAA 349 Query: 524 HDAE 535 DAE Sbjct: 350 RDAE 353 [83][TOP] >UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas RepID=Q23699_CRAGI Length = 1340 Score = 169 bits (429), Expect = 9e-41 Identities = 97/178 (54%), Positives = 115/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL P K+V GVE L R V+ + LS A Sbjct: 913 TDLHPIKVVEGVEDLCKRLIVVAGGD---------------------------RLSIQAN 945 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF+ +R++L +K V E RL+ +AF WL+ E+E+RFQQA A GEMVGA AAQS Sbjct: 946 ANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQS 1005 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL G A DAE Sbjct: 1006 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLIGQAARDAE 1063 [84][TOP] >UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15 RepID=A9QMG8_9BILA Length = 587 Score = 169 bits (429), Expect = 9e-41 Identities = 87/124 (70%), Positives = 102/124 (82%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + +R++L SK V ++RL +AF WLL EIE RFQQA+A GEMVG Sbjct: 222 ISKQAQYNATLLMNILLRSTLCSKQVAEKYRLNSEAFEWLLGEIETRFQQAIAQPGEMVG 281 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 282 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAAA 341 Query: 524 HDAE 535 DAE Sbjct: 342 RDAE 345 [85][TOP] >UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E Length = 1422 Score = 169 bits (428), Expect = 1e-40 Identities = 94/178 (52%), Positives = 117/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP K+++GV+ LL + ++ D+ LS+ A Sbjct: 994 TDLSPMKVIQGVKDLLDKCIIVAGDD---------------------------RLSKQAN 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VR++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS Sbjct: 1027 ENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1144 [86][TOP] >UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum halicti RepID=P90678_9BILA Length = 631 Score = 169 bits (428), Expect = 1e-40 Identities = 92/178 (51%), Positives = 117/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P ++++GV + + ++ D+ +S AQ Sbjct: 207 TDLNPVRVIQGVREVSKKLIIVGGDD---------------------------RISVQAQ 239 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + VR++L +K + +H+L +AF WLL EIE RFQQA+A GEMVGA AAQS Sbjct: 240 YNATLLMNILVRSTLCAKAMAEKHKLNAEAFEWLLGEIETRFQQAIAQPGEMVGALAAQS 299 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE Sbjct: 300 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLEGAAAKDAE 357 [87][TOP] >UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp. EM434 RepID=A9QMQ7_9BILA Length = 398 Score = 169 bits (428), Expect = 1e-40 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ GV L + ++ S ED +S+ AQ Sbjct: 211 TDLNPLRVIEGVRELSKKL-IIVSGED--------------------------RISKQAQ 243 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + + HRL +AF WLL E+E RF+QA+A GEMVGA AAQS Sbjct: 244 YNATLLMNILIRSTLCSKKMATSHRLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 303 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDAE 361 [88][TOP] >UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus RepID=O35559_CRIGR Length = 1970 Score = 169 bits (427), Expect = 2e-40 Identities = 93/178 (52%), Positives = 117/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL K+V GV+ L + ++ D+ LS AQ Sbjct: 1002 SDLHSIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF +H+R++L S+ + E RL+ +AF WLL EIE++F QA+A GEMVGA AAQS Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G + DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152 [89][TOP] >UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7Q3C6_ANOGA Length = 1878 Score = 169 bits (427), Expect = 2e-40 Identities = 95/178 (53%), Positives = 114/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP K+++GV LL R ++ + LS+ A Sbjct: 992 TDLSPLKVIQGVRDLLQRCVIVAGTD---------------------------RLSKQAN 1024 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VR++L +K V E RL +AF WL+ EIE RFQQA GEMVGA AAQS Sbjct: 1025 ENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQS 1084 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SKR K PSL V+L G A DAE Sbjct: 1085 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARDAE 1142 [90][TOP] >UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf. armata SB363 RepID=A9UEE2_9BILA Length = 475 Score = 169 bits (427), Expect = 2e-40 Identities = 94/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ G+ L + V+ S ED +S+ AQ Sbjct: 201 TDLNPLRVIEGIRELSTKL-VIVSGED--------------------------RISQQAQ 233 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + S H+L +AF WLL EIE RF+QA+A GEMVGA AAQS Sbjct: 234 YNATLLMNILIRSTLCSKKMASTHKLNSEAFEWLLGEIETRFKQAIAQPGEMVGALAAQS 293 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE Sbjct: 294 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLNGAAAKDAE 351 [91][TOP] >UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermiformis RepID=A9QMR5_9BILA Length = 524 Score = 168 bits (426), Expect = 2e-40 Identities = 86/124 (69%), Positives = 101/124 (81%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + VR++L SK + ++RL +AF WLL E+E RFQQA+A GEMVG Sbjct: 228 ISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVG 287 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A Sbjct: 288 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGAAA 347 Query: 524 HDAE 535 DAE Sbjct: 348 RDAE 351 [92][TOP] >UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis RepID=A9QMF4_9BILA Length = 597 Score = 168 bits (426), Expect = 2e-40 Identities = 86/124 (69%), Positives = 101/124 (81%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + VR++L SK + ++RL +AF WLL E+E RFQQA+A GEMVG Sbjct: 196 ISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVG 255 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A Sbjct: 256 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGAAA 315 Query: 524 HDAE 535 DAE Sbjct: 316 RDAE 319 [93][TOP] >UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179338A Length = 1862 Score = 168 bits (425), Expect = 3e-40 Identities = 93/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P K++ GV+ LL + ++ + ELS+ A Sbjct: 995 TDLNPVKVINGVKELLDKCVIVAGGD---------------------------ELSKKAN 1027 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VR++L +K+V RL+ +AF WL+ EIENRF+QA A GEMVGA AAQS Sbjct: 1028 HNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQPGEMVGALAAQS 1087 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1088 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1145 [94][TOP] >UniRef100_Q6JU33 RNA polymerase II largest subunit (Fragment) n=1 Tax=Limnadia lenticularis RepID=Q6JU33_9CRUS Length = 256 Score = 168 bits (425), Expect = 3e-40 Identities = 93/178 (52%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P ++++GV LL + + ++ +LS+ A Sbjct: 10 TDLNPVRVIQGVRDLLQKCIAVPGED---------------------------KLSKQAN 42 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VRA+L +K V E+RL+ +AF WL+ EIE RF QA AP GEMVGA AAQS Sbjct: 43 ENATLLFQTLVRATLCTKRVAEEYRLSSEAFEWLIGEIETRFLQAQAPPGEMVGALAAQS 102 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 160 [95][TOP] >UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium discoideum RepID=RPB1_DICDI Length = 1727 Score = 167 bits (424), Expect = 3e-40 Identities = 91/178 (51%), Positives = 117/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL+P+ +V +E L+ R +++ + + E DE Sbjct: 989 SDLNPAVVVLEIEKLVARLKIIATADTTE------------------DDENFNRAWAEVY 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT+LF + VR++ ASK VL+E RLT KAF W+ EIE++F QALA GEMVGA AAQS Sbjct: 1031 FNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN++K+ KTPSL +YL+ D + Sbjct: 1091 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIYLKPHMARDMD 1148 [96][TOP] >UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130 RepID=A9QMH3_9BILA Length = 619 Score = 167 bits (423), Expect = 4e-40 Identities = 93/178 (52%), Positives = 120/178 (67%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ GV L + ++ S ED ++S+ AQ Sbjct: 203 TDLNPLRVIEGVRELSKKL-IIVSGED--------------------------KISKQAQ 235 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + VR++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS Sbjct: 236 YNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 295 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE Sbjct: 296 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAAKDAE 353 [97][TOP] >UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae RepID=A9QME1_9BILA Length = 628 Score = 167 bits (423), Expect = 4e-40 Identities = 93/178 (52%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ GV L + ++ S ED +S+ AQ Sbjct: 204 TDLNPLRVIEGVRELSQKL-IIVSGED--------------------------RISKQAQ 236 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + VR++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS Sbjct: 237 YNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 296 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE Sbjct: 297 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAAKDAE 354 [98][TOP] >UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D5670C Length = 2007 Score = 167 bits (422), Expect = 6e-40 Identities = 95/178 (53%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV LL++ V+ + ED LS+ A Sbjct: 998 TDLSPLRVIQGVRELLNKC-VIVAGED--------------------------RLSKQAN 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VR++L +K V E RL+ +AF WL+ EIE RFQQA GEMVGA AAQS Sbjct: 1031 ENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVNPGEMVGALAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1091 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1148 [99][TOP] >UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica RepID=Q6E227_CAEJA Length = 608 Score = 167 bits (422), Expect = 6e-40 Identities = 86/125 (68%), Positives = 101/125 (80%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE RFQQA+A GEMV Sbjct: 220 EISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 279 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLTGAA 339 Query: 521 VHDAE 535 DAE Sbjct: 340 ARDAE 344 [100][TOP] >UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi RepID=A9QMG7_9BILA Length = 583 Score = 167 bits (422), Expect = 6e-40 Identities = 86/124 (69%), Positives = 100/124 (80%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + VR++L SK + ++RL +AF WLL EIE+RFQQA+ GEMVG Sbjct: 221 ISKHAQYNATLLMNILVRSTLCSKQMADKYRLNEEAFEWLLGEIEHRFQQAIVQPGEMVG 280 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL VYL G A Sbjct: 281 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVYLTGGAA 340 Query: 524 HDAE 535 DAE Sbjct: 341 KDAE 344 [101][TOP] >UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae RepID=A9QMG0_OSCTI Length = 629 Score = 167 bits (422), Expect = 6e-40 Identities = 84/124 (67%), Positives = 101/124 (81%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S AQ NATLL + +R++L SK + + H+L ++AF WLL EIE RF+ A+A GEMVG Sbjct: 238 ISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVG 297 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 298 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAA 357 Query: 524 HDAE 535 DAE Sbjct: 358 KDAE 361 [102][TOP] >UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274 RepID=A9QME6_9PELO Length = 526 Score = 167 bits (422), Expect = 6e-40 Identities = 85/124 (68%), Positives = 101/124 (81%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + +R++L SK + S ++L +AF WLL E+E RFQQA+A GEMVG Sbjct: 135 ISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEWLLGEVETRFQQAIAQPGEMVG 194 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A Sbjct: 195 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLTGAAT 254 Query: 524 HDAE 535 DA+ Sbjct: 255 KDAD 258 [103][TOP] >UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae RepID=A9QME4_OSCTI Length = 446 Score = 167 bits (422), Expect = 6e-40 Identities = 84/124 (67%), Positives = 101/124 (81%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S AQ NATLL + +R++L SK + + H+L ++AF WLL EIE RF+ A+A GEMVG Sbjct: 60 ISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVG 119 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 120 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAA 179 Query: 524 HDAE 535 DAE Sbjct: 180 KDAE 183 [104][TOP] >UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA Length = 1943 Score = 167 bits (422), Expect = 6e-40 Identities = 92/178 (51%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ GV+ L + V+ S ED +S+ AQ Sbjct: 1067 TDLNPLRVIEGVKELSKKL-VIVSGED--------------------------RISKQAQ 1099 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L +K + +HRL + F WL+ EIE+RF+QA+ GEMVGA AAQS Sbjct: 1100 YNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQS 1159 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE Sbjct: 1160 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLQGTAAKDAE 1217 [105][TOP] >UniRef100_Q6JU18 RNA polymerase II largest subunit (Fragment) n=1 Tax=Mesocyclops edax RepID=Q6JU18_9MAXI Length = 302 Score = 166 bits (421), Expect = 8e-40 Identities = 96/177 (54%), Positives = 116/177 (65%) Frame = +2 Query: 5 DLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 184 DLSP K++ GV LL + V+ ED +LS+ A Sbjct: 11 DLSPLKVITGVRDLLEKC-VIVKGED--------------------------KLSKQANE 43 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 NAT LFQ VR++L SK+V + RL+ +AF WLL EIE++F QA A GEMVGA AAQSI Sbjct: 44 NATTLFQCLVRSTLCSKLVAEQFRLSEEAFEWLLGEIESKFMQAQATPGEMVGAIAAQSI 103 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 104 GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 160 [106][TOP] >UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum RepID=O01364_9BILA Length = 633 Score = 166 bits (421), Expect = 8e-40 Identities = 93/178 (52%), Positives = 117/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ GV L + V+ ED +S+ AQ Sbjct: 207 TDLNPLRVIEGVRELSKKL-VIVGGED--------------------------RISKQAQ 239 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + S ++L ++AF WLL E+E RFQQ +A GEMVGA AAQS Sbjct: 240 YNATLLMNILLRSTLCSKQMASHYKLNQEAFDWLLGEVETRFQQPIAQPGEMVGALAAQS 299 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+LRG A DA+ Sbjct: 300 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKMLKTPSLTVFLRGVAARDAD 357 [107][TOP] >UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=UPI0001985649 Length = 1848 Score = 166 bits (420), Expect = 1e-39 Identities = 94/172 (54%), Positives = 115/172 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV V+ L R +V+ D D I+ E AQ Sbjct: 998 SDMHPMEIVEAVDKLQERLKVVPGD-----DLISME----------------------AQ 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F + +R++ ASK VL E+RLTR+AF W++ EIE+RF Q+L GEM+G AAQS Sbjct: 1031 KNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ D Sbjct: 1091 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPD 1142 [108][TOP] >UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NVN7_VITVI Length = 1010 Score = 166 bits (420), Expect = 1e-39 Identities = 94/172 (54%), Positives = 115/172 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV V+ L R +V+ D D I+ E AQ Sbjct: 235 SDMHPMEIVEAVDKLQERLKVVPGD-----DLISME----------------------AQ 267 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F + +R++ ASK VL E+RLTR+AF W++ EIE+RF Q+L GEM+G AAQS Sbjct: 268 KNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 327 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ D Sbjct: 328 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPD 379 [109][TOP] >UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium vulgare RepID=Q9NJN3_ARMVU Length = 433 Score = 166 bits (420), Expect = 1e-39 Identities = 92/178 (51%), Positives = 115/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP K+V GV L + +++ ++ +S A Sbjct: 159 TDLSPIKVVEGVNETLRKCMIVSGED---------------------------RISVQAN 191 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF VR++L +K V E+RLT +AF WL+ EIE RF QA+A GEMVGA AAQS Sbjct: 192 ENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQS 251 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 252 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLLGAAARDAE 309 [110][TOP] >UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium vulgare RepID=Q6JU60_ARMVU Length = 736 Score = 166 bits (420), Expect = 1e-39 Identities = 92/178 (51%), Positives = 115/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP K+V GV L + +++ ++ +S A Sbjct: 462 TDLSPIKVVEGVNETLRKCMIVSGED---------------------------RISVQAN 494 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF VR++L +K V E+RLT +AF WL+ EIE RF QA+A GEMVGA AAQS Sbjct: 495 ENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQS 554 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 555 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLLGAAARDAE 612 [111][TOP] >UniRef100_Q9NJL5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Metajapyx subterraneus RepID=Q9NJL5_9HEXA Length = 256 Score = 166 bits (419), Expect = 1e-39 Identities = 91/178 (51%), Positives = 117/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++++GV+ LL + ++ D+ LS+ A Sbjct: 10 TDLSPLRVIQGVQELLRKCVIVAGDD---------------------------RLSKMAN 42 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VR++L ++ V E RL+ +AF WL+ E+E RFQQA GEMVGA AAQS Sbjct: 43 DNATLLFQCLVRSTLCTRRVAXEFRLSSEAFEWLIGEVETRFQQAQVXPGEMVGALAAQS 102 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAAXDAE 160 [112][TOP] >UniRef100_Q9BN99 RNA polymerase II largest subunit (Fragment) n=1 Tax=Stenochrus portoricensis RepID=Q9BN99_9ARAC Length = 256 Score = 166 bits (419), Expect = 1e-39 Identities = 95/178 (53%), Positives = 115/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++ GVE L+ + ++ ++ LS A Sbjct: 10 TDLSPLRVMHGVEDLVKKLIIVPGED---------------------------RLSIQAN 42 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF+ +R+ L +K V E RL+ +AF WLL EIE RFQQA GEMVGA AAQS Sbjct: 43 DNATLLFRALLRSVLCTKRVAEEFRLSSEAFEWLLGEIETRFQQAQVQPGEMVGALAAQS 102 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SKR KTPSL V+L G A DAE Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKRPKTPSLTVFLTGAAARDAE 160 [113][TOP] >UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae RepID=C3ZES3_BRAFL Length = 1934 Score = 166 bits (419), Expect = 1e-39 Identities = 92/178 (51%), Positives = 114/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL P K+V GV L + ++ D+ + A Q Sbjct: 998 TDLHPIKVVEGVRDLSRKLVIVKGDDPISIQA---------------------------Q 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT+LF +R++L ++ VL E RL+ +AF WLL EIE+RF QA+ GEMVGA AAQS Sbjct: 1031 ANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G +DAE Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQPANDAE 1148 [114][TOP] >UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae RepID=A9QMP3_9BILA Length = 406 Score = 166 bits (419), Expect = 1e-39 Identities = 90/178 (50%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ GV L + +++ + +S+ AQ Sbjct: 211 TDLNPLRVIEGVRELSQKLIIVSGEN---------------------------RISKQAQ 243 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + VR++L SK + S+++L +AF WLL E+E RF+QA+A GEMVGA AAQS Sbjct: 244 YNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 303 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+G A DAE Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAAKDAE 361 [115][TOP] >UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres RepID=A9QMF2_9PELO Length = 629 Score = 166 bits (419), Expect = 1e-39 Identities = 84/124 (67%), Positives = 100/124 (80%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + +R++L SK + +HRL AF WLL EIE+RFQQA+ GEMVG Sbjct: 234 ISKQAQYNATLLVNILIRSTLCSKQMSEKHRLNESAFDWLLGEIEHRFQQAIVQPGEMVG 293 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK +TPSL V+L+G A Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 353 Query: 524 HDAE 535 DAE Sbjct: 354 KDAE 357 [116][TOP] >UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae RepID=UPI000186501C Length = 1956 Score = 165 bits (418), Expect = 2e-39 Identities = 92/178 (51%), Positives = 114/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL P K+V GV L + ++ D+ + A Q Sbjct: 998 TDLHPIKVVEGVRDLSKKLVIVKGDDPISIQA---------------------------Q 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT+LF +R++L ++ VL E RL+ +AF WLL EIE+RF QA+ GEMVGA AAQS Sbjct: 1031 ANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G +DAE Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQPANDAE 1148 [117][TOP] >UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei RepID=Q6E233_CAERE Length = 611 Score = 165 bits (418), Expect = 2e-39 Identities = 84/125 (67%), Positives = 102/125 (81%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 E+S+ AQ NATLL + +R++L +K + + +L +AF WLL E+E+RFQQA+A GEMV Sbjct: 220 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEMV 279 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 339 Query: 521 VHDAE 535 DAE Sbjct: 340 AKDAE 344 [118][TOP] >UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp. RepID=O01370_9BILA Length = 633 Score = 165 bits (418), Expect = 2e-39 Identities = 91/178 (51%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 ++LSP +++ GV L + +++ D+ +S+ AQ Sbjct: 207 TNLSPLRVIEGVRELSKKLIIVSGDD---------------------------RISQQAQ 239 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + ++RL ++ F WLL EIE+RFQQA+A GEMVGA AAQS Sbjct: 240 YNATLLMNILLRSTLCSKQMAEKYRLNQEGFEWLLGEIEHRFQQAIAQPGEMVGALAAQS 299 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G A DAE Sbjct: 300 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLTGAARKDAE 357 [119][TOP] >UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PJA3_IXOSC Length = 1937 Score = 165 bits (418), Expect = 2e-39 Identities = 94/178 (52%), Positives = 116/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP ++V+GVE L+ + ++ ++ LS A Sbjct: 1002 TDLSPLRVVQGVEELVKKLVIVPGED---------------------------HLSIQAN 1034 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF+ +RA+L SK V E RL+ ++F WLL EIE RF Q+ GEMVGA AAQS Sbjct: 1035 ENATLLFRSLLRATLCSKRVAEEFRLSTESFEWLLGEIETRFHQSQGQPGEMVGALAAQS 1094 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A DAE Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGAAARDAE 1152 [120][TOP] >UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora RepID=A9QMP5_9BILA Length = 474 Score = 165 bits (418), Expect = 2e-39 Identities = 83/124 (66%), Positives = 103/124 (83%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + +R++L SK + + ++L ++AF WLL E+E RF+QA+A GEMVG Sbjct: 227 ISKQAQYNATLLMNILLRSTLCSKKMATTYKLNQEAFEWLLGEVETRFKQAIAQPGEMVG 286 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 287 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAA 346 Query: 524 HDAE 535 DAE Sbjct: 347 KDAE 350 [121][TOP] >UniRef100_Q9NJN1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Semibalanus balanoides RepID=Q9NJN1_SEMBA Length = 256 Score = 165 bits (417), Expect = 2e-39 Identities = 90/178 (50%), Positives = 116/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP K++ GV LL R V+ ++ LS+TA Sbjct: 10 TDLSPLKVLEGVRTLLSRCVVVRGED---------------------------RLSKTAN 42 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT+LF VR++L ++ V E+RL+ +AF WL+ EI+ RF QA+ GEMVGA AAQS Sbjct: 43 ANATILFSCLVRSTLCTRRVAEEYRLSSEAFEWLIGEIDTRFHQAMVNPGEMVGALAAQS 102 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G + DAE Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGASARDAE 160 [122][TOP] >UniRef100_Q9BNA4 RNA polymerase II largest subunit (Fragment) n=1 Tax=solifugid 'Sol' RepID=Q9BNA4_9ARAC Length = 256 Score = 165 bits (417), Expect = 2e-39 Identities = 93/178 (52%), Positives = 116/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP + ++GVE L+ + ++ ++ LS A Sbjct: 10 TDLSPLRTIKGVEELVKKLIIVPGED---------------------------RLSIQAN 42 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF+ +R++L +K V E RL+ +AF WLL EIE +FQQA GEMVGA AAQS Sbjct: 43 DNATLLFRALLRSTLCAKRVSEEFRLSTEAFDWLLEEIETKFQQAQGQPGEMVGALAAQS 102 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A DAE Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGAAARDAE 160 [123][TOP] >UniRef100_A9UEE0 RNA polymerase 2 largest subunit (Fragment) n=1 Tax=Diploscapter sp. JU359 RepID=A9UEE0_9BILA Length = 284 Score = 165 bits (417), Expect = 2e-39 Identities = 94/178 (52%), Positives = 117/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++ GV L R ++ S ED +S+ AQ Sbjct: 3 TDLSPIRVIDGVREL-SRKLIIVSGED--------------------------RISKQAQ 35 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + ++L +AF WLL E+E RF QA+A GEMVGA AAQS Sbjct: 36 YNATLLMXILLRSTLCSKKMGMAYKLDSEAFEWLLGEVEQRFNQAIAQPGEMVGALAAQS 95 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE Sbjct: 96 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKLKTPSLTVFLQGAAAKDAE 153 [124][TOP] >UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius dolichuroides RepID=A9QMG1_9BILA Length = 629 Score = 165 bits (417), Expect = 2e-39 Identities = 90/176 (51%), Positives = 116/176 (65%) Frame = +2 Query: 8 LSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLN 187 L+P ++RGV L + ++ D+ +S+ AQ N Sbjct: 216 LNPLNVIRGVRSLSEKLIIVGGDD---------------------------RISKQAQYN 248 Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367 ATLL + +R++L +K + + H+L ++AF WLL EIE RF+ A+A GEMVGA AAQS+G Sbjct: 249 ATLLMNILLRSTLCAKKMATTHKLNQEAFEWLLGEIETRFKAAIAQPGEMVGALAAQSLG 308 Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE Sbjct: 309 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDAE 364 [125][TOP] >UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186D846 Length = 1885 Score = 164 bits (416), Expect = 3e-39 Identities = 94/178 (52%), Positives = 116/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++ GV LL + V+ + ED LS+ A Sbjct: 987 TDLSPLRVIEGVRDLLQKC-VIVAGED--------------------------HLSKQAN 1019 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VR++L +K V + RL+ +AF WL+ EIE RFQQA GEMVGA AAQS Sbjct: 1020 ENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQS 1079 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A DAE Sbjct: 1080 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1137 [126][TOP] >UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei RepID=Q6E228_9BILA Length = 621 Score = 164 bits (416), Expect = 3e-39 Identities = 91/178 (51%), Positives = 119/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ G++ L + ++ S ED +S+ AQ Sbjct: 211 TDLNPLRVIDGIKELSSKL-IIVSGED--------------------------RISQQAQ 243 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + S ++L ++F WL+ EIE RF+QA+A GEMVGA AAQS Sbjct: 244 YNATLLMNILIRSTLCSKKMASTYKLNAESFEWLIGEIETRFKQAIAQPGEMVGALAAQS 303 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A DAE Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLIGAAAKDAE 361 [127][TOP] >UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5YGY9_SORBI Length = 1857 Score = 164 bits (415), Expect = 4e-39 Identities = 89/170 (52%), Positives = 113/170 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV V+ L R +V+ D+ ++A Q Sbjct: 997 SDMHPMEIVEAVDKLQERLKVVPGDDPMSIEA---------------------------Q 1029 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS Sbjct: 1030 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1089 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ Sbjct: 1090 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1139 [128][TOP] >UniRef100_A9QMQ4 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi RepID=A9QMQ4_9BILA Length = 380 Score = 164 bits (415), Expect = 4e-39 Identities = 83/120 (69%), Positives = 97/120 (80%) Frame = +2 Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355 AQ NATLL + +R++L SK + + H+L +AF WLL E+E RFQQA+A GEMVGA AA Sbjct: 1 AQYNATLLMNILIRSTLCSKKMATTHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAA 60 Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 QS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL +L+G A DAE Sbjct: 61 QSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTCFLQGAAAKDAE 120 [129][TOP] >UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri RepID=Q6E231_CAEBE Length = 596 Score = 164 bits (414), Expect = 5e-39 Identities = 84/125 (67%), Positives = 100/125 (80%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE RFQQA+A GEMV Sbjct: 212 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 271 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A Sbjct: 272 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGPA 331 Query: 521 VHDAE 535 D E Sbjct: 332 AKDPE 336 [130][TOP] >UniRef100_A9QMT0 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122 RepID=A9QMT0_9BILA Length = 271 Score = 164 bits (414), Expect = 5e-39 Identities = 93/178 (52%), Positives = 115/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++ GV L R ++ S ED +S+ AQ Sbjct: 3 TDLSPLRVIEGVREL-SRKLIIVSGED--------------------------RISKQAQ 35 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + ++L +AF WLL E+E RF A+A GEMVGA AAQS Sbjct: 36 YNATLLMNILLRSTLCSKKMGMSYKLDSEAFEWLLGEVEQRFNSAIAQPGEMVGALAAQS 95 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE Sbjct: 96 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLEGAAAKDAE 153 [131][TOP] >UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis thaliana RepID=RPB1_ARATH Length = 1840 Score = 164 bits (414), Expect = 5e-39 Identities = 94/178 (52%), Positives = 115/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV V+ L R V+ D+ LS AQ Sbjct: 1000 SDMHPVEIVDAVDKLQERLLVVPGDD---------------------------ALSVEAQ 1032 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F + +R++LASK VL E++L+R+AF W++ EIE+RF Q+L GEM+G AAQS Sbjct: 1033 KNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1092 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KR KTPSL VYL +A E Sbjct: 1093 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKE 1150 [132][TOP] >UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max RepID=Q99368_SOYBN Length = 977 Score = 163 bits (413), Expect = 6e-39 Identities = 92/173 (53%), Positives = 117/173 (67%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV ++ L R +V+ EDA LS+ AQ Sbjct: 190 SDMHPMEIVEAIDKLQERLKVVPG-EDA--------------------------LSQEAQ 222 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF + +R++ ASK VL E+RL+R++F W++ EIE+RF Q+L GEM+G AAQS Sbjct: 223 KNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQS 282 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INV+K KTPSL VYL+ DA Sbjct: 283 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELINVAKSIKTPSLSVYLKPDA 335 [133][TOP] >UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=B9FZ51_ORYSJ Length = 1526 Score = 163 bits (413), Expect = 6e-39 Identities = 88/170 (51%), Positives = 113/170 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV ++ L R +V+ D+ ++A Q Sbjct: 669 SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEA---------------------------Q 701 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS Sbjct: 702 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 761 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ Sbjct: 762 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 811 [134][TOP] >UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group RepID=B8BAW1_ORYSI Length = 1449 Score = 163 bits (413), Expect = 6e-39 Identities = 88/170 (51%), Positives = 113/170 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV ++ L R +V+ D+ ++A Q Sbjct: 968 SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEA---------------------------Q 1000 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS Sbjct: 1001 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1060 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ Sbjct: 1061 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1110 [135][TOP] >UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina RepID=Q17085_ARTSA Length = 1341 Score = 163 bits (413), Expect = 6e-39 Identities = 95/178 (53%), Positives = 117/178 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDLSP ++++GV LL + V+ + ED +LS+ A Sbjct: 914 SDLSPLRVIQGVRDLL-KNCVIVNGED--------------------------KLSKQAN 946 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ VR++L +K + E+RL +AF WL+ EIE RFQ A A GEMVGA AAQS Sbjct: 947 ENATLLFQCLVRSTLCTKRLADEYRLNTEAFEWLIGEIETRFQLAQAVPGEMVGAIAAQS 1006 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIINVS+ K PSL V+L G A DAE Sbjct: 1007 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINVSRSPKAPSLTVFLTGTAARDAE 1064 [136][TOP] >UniRef100_A9QMS1 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides regina RepID=A9QMS1_9BILA Length = 426 Score = 163 bits (413), Expect = 6e-39 Identities = 83/124 (66%), Positives = 98/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + +R++L SK + +H+L + F WLL EIE RFQ A+A GEMVG Sbjct: 30 ISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVG 89 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G A Sbjct: 90 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLHGAAA 149 Query: 524 HDAE 535 DAE Sbjct: 150 KDAE 153 [137][TOP] >UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis RepID=A9QMP7_9BILA Length = 440 Score = 163 bits (413), Expect = 6e-39 Identities = 83/124 (66%), Positives = 99/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + VR++L SK + ++L +AF WLL E+E RFQQA+A GEMVG Sbjct: 193 ISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVG 252 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A Sbjct: 253 PLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLEGAAA 312 Query: 524 HDAE 535 DAE Sbjct: 313 KDAE 316 [138][TOP] >UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis palmarum RepID=A9QMG6_9BILA Length = 633 Score = 163 bits (413), Expect = 6e-39 Identities = 92/178 (51%), Positives = 115/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++ G+ L + V+ S ED +S+ AQ Sbjct: 211 TDLSPVRVIEGIRELSKKL-VIVSGED--------------------------RISKQAQ 243 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK V S H+L +AF WLL EIE+RF+QA+A GA AAQS Sbjct: 244 YNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAXXXXXXGALAAQS 303 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +YL G A DAE Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIYLTGAAARDAE 361 [139][TOP] >UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai RepID=A9QMF9_9BILA Length = 618 Score = 163 bits (413), Expect = 6e-39 Identities = 90/178 (50%), Positives = 118/178 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 + L+P K++ GV+ L + +++ D+ +S+ AQ Sbjct: 202 TSLNPLKVISGVQELSKKLIIVSGDDS---------------------------ISKQAQ 234 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + S ++L +AF WLL E+E RF+QA+A GEMVGA AAQS Sbjct: 235 YNATLLMNILLRSTLCSKRMASMYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 294 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE Sbjct: 295 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLSVFLTGAAAKDAE 352 [140][TOP] >UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis RepID=A9QMF5_9BILA Length = 630 Score = 163 bits (413), Expect = 6e-39 Identities = 83/124 (66%), Positives = 99/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + VR++L SK + ++L +AF WLL E+E RFQQA+A GEMVG Sbjct: 230 ISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVG 289 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A Sbjct: 290 PLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLEGAAA 349 Query: 524 HDAE 535 DAE Sbjct: 350 KDAE 353 [141][TOP] >UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina RepID=A9QMF3_9BILA Length = 626 Score = 163 bits (413), Expect = 6e-39 Identities = 83/124 (66%), Positives = 98/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + +R++L SK + +H+L + F WLL EIE RFQ A+A GEMVG Sbjct: 234 ISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVG 293 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G A Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLHGAAA 353 Query: 524 HDAE 535 DAE Sbjct: 354 KDAE 357 [142][TOP] >UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis elegans RepID=RPB1_CAEEL Length = 1852 Score = 163 bits (413), Expect = 6e-39 Identities = 84/125 (67%), Positives = 101/125 (80%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 E+S+ AQ NATLL + +R++L +K + ++ +L +AF WLL EIE+RFQQA+A GEMV Sbjct: 1018 EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMV 1077 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G A Sbjct: 1078 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAA 1137 Query: 521 VHDAE 535 D E Sbjct: 1138 AKDPE 1142 [143][TOP] >UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis briggsae RepID=RPB1_CAEBR Length = 1853 Score = 163 bits (413), Expect = 6e-39 Identities = 84/125 (67%), Positives = 100/125 (80%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE RFQQA+A GEMV Sbjct: 1022 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 1081 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A Sbjct: 1082 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 1141 Query: 521 VHDAE 535 D E Sbjct: 1142 AKDPE 1146 [144][TOP] >UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351 Length = 2085 Score = 163 bits (412), Expect = 8e-39 Identities = 88/170 (51%), Positives = 113/170 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV ++ L R +V+ D+D ++A Q Sbjct: 999 SDMHPMEIVDAIDKLQERLKVVPGDDDISIEA---------------------------Q 1031 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS Sbjct: 1032 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1091 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTPSL V+L+ Sbjct: 1092 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLK 1141 [145][TOP] >UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q5WMZ9_ORYSJ Length = 1741 Score = 163 bits (412), Expect = 8e-39 Identities = 88/170 (51%), Positives = 113/170 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV ++ L R +V+ D+D ++A Q Sbjct: 946 SDMHPMEIVDAIDKLQERLKVVPGDDDISIEA---------------------------Q 978 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS Sbjct: 979 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1038 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTPSL V+L+ Sbjct: 1039 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLK 1088 [146][TOP] >UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q0DKN9_ORYSJ Length = 1834 Score = 163 bits (412), Expect = 8e-39 Identities = 88/170 (51%), Positives = 113/170 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV ++ L R +V+ D+D ++A Q Sbjct: 999 SDMHPMEIVDAIDKLQERLKVVPGDDDISIEA---------------------------Q 1031 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L GEM+G AAQS Sbjct: 1032 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1091 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTPSL V+L+ Sbjct: 1092 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLK 1141 [147][TOP] >UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5Y387_SORBI Length = 1874 Score = 163 bits (412), Expect = 8e-39 Identities = 92/170 (54%), Positives = 113/170 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV ++ L R +V+ D DAI+ E AQ Sbjct: 998 SDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE----------------------AQ 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F +H+RA+ ASK VL E+RLTR+AF W++ EI RF Q+L EM+G AAQS Sbjct: 1031 KNATLFFNIHLRATFASKRVLREYRLTREAFEWIIDEIVWRFSQSLVAPSEMIGCVAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ Sbjct: 1091 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140 [148][TOP] >UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK89_PHYPA Length = 1646 Score = 163 bits (412), Expect = 8e-39 Identities = 90/170 (52%), Positives = 113/170 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV V+ L R RV+ D+ ++S AQ Sbjct: 986 SDMHPMEIVEAVDKLQERLRVVPGDD---------------------------QISMEAQ 1018 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F +R++LASK VL ++RLTR+AF W++ EIE RF +L GEM+G AAQS Sbjct: 1019 RNATLFFGCLLRSTLASKRVLKDYRLTREAFDWVIGEIETRFLMSLVAPGEMIGCVAAQS 1078 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+TKTPSL V+L+ Sbjct: 1079 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKTKTPSLTVFLK 1128 [149][TOP] >UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010 RepID=Q6E232_9PELO Length = 601 Score = 163 bits (412), Expect = 8e-39 Identities = 83/125 (66%), Positives = 101/125 (80%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 ++S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE+RF QA+A GEMV Sbjct: 220 DISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMV 279 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 339 Query: 521 VHDAE 535 DAE Sbjct: 340 AKDAE 344 [150][TOP] >UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp. SB341 RepID=Q6E225_9PELO Length = 622 Score = 163 bits (412), Expect = 8e-39 Identities = 82/125 (65%), Positives = 102/125 (81%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 ++S+ AQ NATLL + +R++L SK + + +L +AF WLL E+E+RF Q++A GEMV Sbjct: 237 DISKQAQYNATLLMNILLRSTLCSKKMATSAKLNTEAFDWLLGEVESRFMQSIAQPGEMV 296 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAA 356 Query: 521 VHDAE 535 DAE Sbjct: 357 AKDAE 361 [151][TOP] >UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified nematode RepID=O01376_9BILA Length = 633 Score = 163 bits (412), Expect = 8e-39 Identities = 83/125 (66%), Positives = 101/125 (80%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 ++S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE+RF QA+A GEMV Sbjct: 233 DISKQAQYNATLLMNILLRSALCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMV 292 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A Sbjct: 293 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 352 Query: 521 VHDAE 535 DAE Sbjct: 353 AKDAE 357 [152][TOP] >UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica RepID=A9QMT2_9PELO Length = 488 Score = 162 bits (411), Expect = 1e-38 Identities = 87/176 (49%), Positives = 116/176 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ GV L + +++ D+ +S+ AQ Sbjct: 193 TDLNPLRVIEGVRELSEKLVIVSGDD---------------------------RISKQAQ 225 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + S +RL +AF W+L E+E RF+QA+A GEMVGA AAQS Sbjct: 226 YNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQS 285 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +L+G A D Sbjct: 286 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLQGAAAKD 341 [153][TOP] >UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica RepID=A9QME0_9PELO Length = 633 Score = 162 bits (411), Expect = 1e-38 Identities = 87/176 (49%), Positives = 116/176 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ GV L + +++ D+ +S+ AQ Sbjct: 207 TDLNPLRVIEGVRELSEKLVIVSGDD---------------------------RISKQAQ 239 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + S +RL +AF W+L E+E RF+QA+A GEMVGA AAQS Sbjct: 240 YNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQS 299 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +L+G A D Sbjct: 300 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLQGAAAKD 355 [154][TOP] >UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis wirthi RepID=Q6GYH6_9BILA Length = 630 Score = 162 bits (410), Expect = 1e-38 Identities = 83/124 (66%), Positives = 99/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + +R++L SK + S ++L +AF WLL EIENRFQ A+A GEMVG Sbjct: 240 ISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDWLLGEIENRFQSAIAQPGEMVG 299 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L+ D Sbjct: 300 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQEDVA 359 Query: 524 HDAE 535 D + Sbjct: 360 KDRD 363 [155][TOP] >UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070 RepID=Q6E223_9PELO Length = 606 Score = 162 bits (410), Expect = 1e-38 Identities = 82/125 (65%), Positives = 101/125 (80%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 ++S+ AQ NATLL + +R++L +K + + +L +AF WLL E+E+RF QA+A GEMV Sbjct: 220 DISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMV 279 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLIGAA 339 Query: 521 VHDAE 535 DAE Sbjct: 340 ARDAE 344 [156][TOP] >UniRef100_Q1PQE9 CG1554 (Fragment) n=1 Tax=Drosophila miranda RepID=Q1PQE9_DROMI Length = 335 Score = 162 bits (410), Expect = 1e-38 Identities = 83/124 (66%), Positives = 99/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ A NATLLFQ +R++L +K V E RL+ +AF WL+ EIE RFQQA A GEMVG Sbjct: 18 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 77 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A Sbjct: 78 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 137 Query: 524 HDAE 535 DAE Sbjct: 138 RDAE 141 [157][TOP] >UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata RepID=A9QMF1_9PELO Length = 605 Score = 162 bits (410), Expect = 1e-38 Identities = 82/124 (66%), Positives = 100/124 (80%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + +R++L SK + ++RL + F WLL EIE+RF QA+A GEMVG Sbjct: 215 ISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVG 274 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK +TPSL V+L+G A Sbjct: 275 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 334 Query: 524 HDAE 535 DAE Sbjct: 335 KDAE 338 [158][TOP] >UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis RepID=A7S8F9_NEMVE Length = 1929 Score = 162 bits (409), Expect = 2e-38 Identities = 93/178 (52%), Positives = 113/178 (63%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P +++ GV L + V+ + ED +S+ AQ Sbjct: 998 SDLHPLRVIEGVRELSKKL-VIVAGED--------------------------HISKQAQ 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF + +R++L +K V E L+ +AF WLL EIE RF + GEMVGA AAQS Sbjct: 1031 FNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVKPGEMVGALAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A DAE Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLIGQAARDAE 1148 [159][TOP] >UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp. JU727 RepID=A9QMQ9_9PELO Length = 620 Score = 161 bits (408), Expect = 2e-38 Identities = 83/125 (66%), Positives = 99/125 (79%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 E+S+ AQ NATLL + +R++L +K + + +L +AF WLL EIE RFQ A+A GEMV Sbjct: 237 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQSAIAQPGEMV 296 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 356 Query: 521 VHDAE 535 D E Sbjct: 357 AKDPE 361 [160][TOP] >UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius varius RepID=A8BDP1_PARVA Length = 467 Score = 161 bits (408), Expect = 2e-38 Identities = 90/178 (50%), Positives = 115/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P K+VRGV+ L + V+ + + +S+ AQ Sbjct: 142 SDLHPLKVVRGVQELSEKLIVV---------------------------KGVDRISQRAQ 174 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 L+AT L +R++L ++ V E +L+ AF W+L EIE+RF+ +L GEMVG +AQS Sbjct: 175 LDATFLMNALIRSTLCTRRVAEEFKLSSDAFDWVLGEIESRFRSSLVDPGEMVGPLSAQS 234 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL V+L+G A DAE Sbjct: 235 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTVFLKGAAARDAE 292 [161][TOP] >UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SXC0_RICCO Length = 1855 Score = 160 bits (406), Expect = 4e-38 Identities = 88/169 (52%), Positives = 112/169 (66%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P + V V+ L R +V+ D+ V+A Q Sbjct: 998 SDIHPMEAVEAVDKLQERLKVVPGDDPLSVEA---------------------------Q 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F + +R++LASK VL ++RLTR+AF W++ EIE+RF Q+L GEM+G AAQS Sbjct: 1031 KNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL ++L Sbjct: 1091 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFL 1139 [162][TOP] >UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U396_PHYPA Length = 1742 Score = 160 bits (406), Expect = 4e-38 Identities = 89/170 (52%), Positives = 112/170 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SD+ P +IV VE L R RV+ ++ ++S AQ Sbjct: 1001 SDMHPMEIVEAVENLQERLRVVPGND---------------------------QISMEAQ 1033 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F +R++LASK VL ++RLTR+AF W++ E+E RF +L GEM+G AAQS Sbjct: 1034 RNATLFFGCLLRSTLASKRVLKDYRLTREAFEWVIGEVETRFLMSLVAPGEMIGCVAAQS 1093 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ Sbjct: 1094 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLTVYLK 1143 [163][TOP] >UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis mediterranea RepID=A9QME7_9PELO Length = 618 Score = 160 bits (406), Expect = 4e-38 Identities = 88/178 (49%), Positives = 114/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP +++ GV + + ++ ++ +S+ AQ Sbjct: 208 TDLSPLRVIEGVRDMSEKLIIVAGED---------------------------RISKQAQ 240 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + ++L +AF WLL E+E RF+QA+A GEMVG AAQS Sbjct: 241 YNATLLMNILLRSTLCSKKMAVSYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGPLAAQS 300 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G A DAE Sbjct: 301 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLLGAAAKDAE 358 [164][TOP] >UniRef100_A9QMS3 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata RepID=A9QMS3_9PELO Length = 363 Score = 160 bits (405), Expect = 5e-38 Identities = 81/124 (65%), Positives = 99/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLL + +R++L SK + ++RL + F WLL EIE+RF QA+A GEMVG Sbjct: 9 ISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVG 68 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A A QS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK +TPSL V+L+G A Sbjct: 69 ALAXQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 128 Query: 524 HDAE 535 DAE Sbjct: 129 KDAE 132 [165][TOP] >UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri RepID=Q010D7_OSTTA Length = 1673 Score = 160 bits (404), Expect = 7e-38 Identities = 80/122 (65%), Positives = 98/122 (80%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 LS AQ N TLLF HVRA+LA+K VL +H+LTR F W++ E+E+RF+ ALAP G+ +G Sbjct: 1022 LSIEAQRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDWVIGEVESRFKMALAPPGDGIG 1081 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K+ KTPSL V L+ + Sbjct: 1082 VVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKQIKTPSLTVALKPEFA 1141 Query: 524 HD 529 D Sbjct: 1142 SD 1143 [166][TOP] >UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S3M0_OSTLU Length = 1646 Score = 160 bits (404), Expect = 7e-38 Identities = 80/122 (65%), Positives = 97/122 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 LS AQ N T+LF HVRA+LA+K VL EH+LTR F W++ EIE+RF+ ALAP G+ +G Sbjct: 1002 LSVEAQRNGTMLFFAHVRANLAAKRVLKEHKLTRAGFDWVIGEIESRFKMALAPPGDGIG 1061 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K KTPSL + L+ + Sbjct: 1062 TVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKSIKTPSLTIALKPELA 1121 Query: 524 HD 529 D Sbjct: 1122 GD 1123 [167][TOP] >UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis plicata RepID=Q6E226_9PELO Length = 636 Score = 159 bits (403), Expect = 9e-38 Identities = 81/125 (64%), Positives = 98/125 (78%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 ++S AQ NATLL + +R++L SK + + +L +AF WLL E+E+RF QA+A GEMV Sbjct: 237 DISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDWLLGEVESRFNQAIAQPGEMV 296 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL +L G A Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLVGSA 356 Query: 521 VHDAE 535 D E Sbjct: 357 AKDVE 361 [168][TOP] >UniRef100_B4YVW5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne mayaguensis RepID=B4YVW5_MELMY Length = 219 Score = 159 bits (403), Expect = 9e-38 Identities = 82/124 (66%), Positives = 98/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+A GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIAQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [169][TOP] >UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347 RepID=A9QMF8_9BILA Length = 621 Score = 159 bits (403), Expect = 9e-38 Identities = 89/178 (50%), Positives = 115/178 (64%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL+P +++ GV L + ++ S ED +S+ AQ Sbjct: 211 TDLNPIRVIEGVRELSSKL-IIVSGED--------------------------RISKQAQ 243 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + S ++L +AF WLL E+E RF+QA+A GA AAQS Sbjct: 244 YNATLLMNILIRSTLCSKKMASTYKLNSEAFEWLLGEVETRFKQAIAXXXXXXGALAAQS 303 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE Sbjct: 304 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAAKDAE 361 [170][TOP] >UniRef100_A9QME2 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditis blumi RepID=A9QME2_9BILA Length = 151 Score = 159 bits (402), Expect = 1e-37 Identities = 80/116 (68%), Positives = 96/116 (82%) Frame = +2 Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367 ATLL + +R++L S+ + +H+L +AF WLL E+E RF+QA+A GEMVGA AAQS+G Sbjct: 1 ATLLMNILLRSTLCSRKMAFQHKLNAEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLG 60 Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSLVV+L G A DAE Sbjct: 61 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLVVFLTGPAAKDAE 116 [171][TOP] >UniRef100_A8BDP3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Priapulus caudatus RepID=A8BDP3_PRICU Length = 434 Score = 159 bits (402), Expect = 1e-37 Identities = 83/129 (64%), Positives = 98/129 (75%) Frame = +2 Query: 149 EALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPA 328 E LS+ AQ NATL +R++L +K V E++LT ++F WLL E+E+RFQ A A Sbjct: 164 EGEDRLSKQAQENATLNINAMLRSTLCTKRVAEEYKLTTESFEWLLGEVESRFQHAQAQP 223 Query: 329 GEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 GEMVG AAQS+GEPATQMTLNTFHYAGVSAKNVTLG PRL+EIINVSK+ KTPSL V+L Sbjct: 224 GEMVGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGXPRLKEIINVSKKPKTPSLTVFL 283 Query: 509 RGDAVHDAE 535 G A DAE Sbjct: 284 TGQAARDAE 292 [172][TOP] >UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48673 Length = 1880 Score = 159 bits (401), Expect = 2e-37 Identities = 81/124 (65%), Positives = 98/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S AQ NAT L +R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVG Sbjct: 1023 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1082 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL +L G A Sbjct: 1083 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1142 Query: 524 HDAE 535 DAE Sbjct: 1143 RDAE 1146 [173][TOP] >UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48672 Length = 1913 Score = 159 bits (401), Expect = 2e-37 Identities = 81/124 (65%), Positives = 98/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S AQ NAT L +R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVG Sbjct: 1029 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1088 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL +L G A Sbjct: 1089 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1148 Query: 524 HDAE 535 DAE Sbjct: 1149 RDAE 1152 [174][TOP] >UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48671 Length = 1921 Score = 159 bits (401), Expect = 2e-37 Identities = 81/124 (65%), Positives = 98/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S AQ NAT L +R++L+S V EH+L+ ++F WLL EIE RF Q+LA AGEMVG Sbjct: 1029 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1088 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL +L G A Sbjct: 1089 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1148 Query: 524 HDAE 535 DAE Sbjct: 1149 RDAE 1152 [175][TOP] >UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis drosophilae RepID=Q6E224_9PELO Length = 633 Score = 159 bits (401), Expect = 2e-37 Identities = 80/125 (64%), Positives = 100/125 (80%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 ++S+ AQ NATLL + +R++L +K + + +L +AF WLL E+E+RF QA+A GEMV Sbjct: 236 DISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMV 295 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 GA AAQS+GEPA QMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL V+L G A Sbjct: 296 GALAAQSLGEPAPQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKQLKTPSLTVFLIGAA 355 Query: 521 VHDAE 535 DAE Sbjct: 356 ARDAE 360 [176][TOP] >UniRef100_C4QEL8 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni RepID=C4QEL8_SCHMA Length = 1785 Score = 159 bits (401), Expect = 2e-37 Identities = 82/124 (66%), Positives = 97/124 (78%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 LS+ A NATLL +RASL +K V+ ++RL+ +A W+L E+ RFQQA GEMVG Sbjct: 919 LSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVRARFQQAHIHPGEMVG 978 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPS+ ++L G A Sbjct: 979 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSMTIFLTGQAA 1038 Query: 524 HDAE 535 DAE Sbjct: 1039 RDAE 1042 [177][TOP] >UniRef100_B4YVX3 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne hapla RepID=B4YVX3_MELHA Length = 219 Score = 159 bits (401), Expect = 2e-37 Identities = 82/124 (66%), Positives = 97/124 (78%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 LS+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 LSKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [178][TOP] >UniRef100_B4YVX2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne hapla RepID=B4YVX2_MELHA Length = 219 Score = 158 bits (399), Expect = 3e-37 Identities = 81/124 (65%), Positives = 97/124 (78%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [179][TOP] >UniRef100_B4YVW9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne hapla RepID=B4YVW9_MELHA Length = 219 Score = 158 bits (399), Expect = 3e-37 Identities = 81/124 (65%), Positives = 97/124 (78%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [180][TOP] >UniRef100_B4YVW7 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne hapla RepID=B4YVW7_MELHA Length = 219 Score = 158 bits (399), Expect = 3e-37 Identities = 81/124 (65%), Positives = 97/124 (78%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [181][TOP] >UniRef100_B4YVW2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne mayaguensis RepID=B4YVW2_MELMY Length = 219 Score = 158 bits (399), Expect = 3e-37 Identities = 81/124 (65%), Positives = 97/124 (78%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [182][TOP] >UniRef100_B4YVU6 RNA polymerase II large subunit (Fragment) n=2 Tax=Meloidogyne incognita group RepID=B4YVU6_MELAR Length = 219 Score = 158 bits (399), Expect = 3e-37 Identities = 81/124 (65%), Positives = 97/124 (78%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [183][TOP] >UniRef100_B4YVU3 RNA polymerase II large subunit (Fragment) n=5 Tax=Meloidogyne RepID=B4YVU3_MELAR Length = 219 Score = 158 bits (399), Expect = 3e-37 Identities = 81/124 (65%), Positives = 97/124 (78%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [184][TOP] >UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7R1R2_VITVI Length = 429 Score = 157 bits (398), Expect = 3e-37 Identities = 80/116 (68%), Positives = 98/116 (84%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S AQ NATLLF + +R++ +SK VL+E+RL+R+AF W++ EIE+RF Q+L GEM+G Sbjct: 282 ISMEAQKNATLLFNILLRSTFSSKRVLNEYRLSREAFDWVIGEIESRFLQSLVSPGEMIG 341 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTPSL VYL+ Sbjct: 342 CIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKIIKTPSLSVYLK 397 [185][TOP] >UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis RepID=Q9BMP3_MONBE Length = 1743 Score = 157 bits (398), Expect = 3e-37 Identities = 87/176 (49%), Positives = 110/176 (62%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP+ + + + R V+ D+ LS+ AQ Sbjct: 920 TDLSPAHVAQAIRTFTDRLVVIPGDDP---------------------------LSKVAQ 952 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF ++R+ L+S+ + HRL KAF W+L E+E RF QA A GEMVGA AAQS Sbjct: 953 RNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQS 1012 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529 +GEPATQMTLNTFH AGVSAKNVTLGVPRL+EIINVSK+ KTPS+V+++ D D Sbjct: 1013 LGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPSMVLFIGEDKYQD 1068 [186][TOP] >UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis RepID=A9V5W6_MONBE Length = 1307 Score = 157 bits (398), Expect = 3e-37 Identities = 87/176 (49%), Positives = 110/176 (62%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP+ + + + R V+ D+ LS+ AQ Sbjct: 484 TDLSPAHVAQAIRTFTDRLVVIPGDDP---------------------------LSKVAQ 516 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF ++R+ L+S+ + HRL KAF W+L E+E RF QA A GEMVGA AAQS Sbjct: 517 RNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQS 576 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529 +GEPATQMTLNTFH AGVSAKNVTLGVPRL+EIINVSK+ KTPS+V+++ D D Sbjct: 577 LGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPSMVLFIGEDKYQD 632 [187][TOP] >UniRef100_A9QME5 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura RepID=A9QME5_9BILA Length = 371 Score = 157 bits (398), Expect = 3e-37 Identities = 80/116 (68%), Positives = 96/116 (82%) Frame = +2 Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367 ATLL + +R++L +K + S H+L ++AF WLL EIE RF+ A+A GEMVGA AAQS+G Sbjct: 1 ATLLMNILLRSTLCAKKMASTHKLNQEAFEWLLGEIETRFKAAVAQPGEMVGALAAQSLG 60 Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE Sbjct: 61 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDAE 116 [188][TOP] >UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius elegans RepID=Q6JTX1_9BILA Length = 304 Score = 157 bits (397), Expect = 5e-37 Identities = 89/178 (50%), Positives = 112/178 (62%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL P ++V G+ L+ + V+ ED LS AQ Sbjct: 133 TDLHPVRVVEGLNELMKKL-VIVKGED--------------------------RLSREAQ 165 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT+L +R++L SK + E+ L +AF WLL EIE+RF Q++ GEMVGA AAQS Sbjct: 166 ENATILMNTMLRSTLCSKRMAEEYHLNTEAFEWLLGEIESRFAQSMVQPGEMVGALAAQS 225 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INVSK +TPSL V+L G A DAE Sbjct: 226 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVSKNPRTPSLAVFLLGSAARDAE 283 [189][TOP] >UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis RepID=Q25151_9ANNE Length = 1337 Score = 157 bits (396), Expect = 6e-37 Identities = 82/124 (66%), Positives = 96/124 (77%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 LS+TA NATLL + VR++L SK V+ E L+ +AF WL+ EIE++F QA GEMVG Sbjct: 936 LSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEWLMGEIESKFIQARVQPGEMVG 995 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ + PSL V L G Sbjct: 996 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRAPSLTVILIGQPA 1055 Query: 524 HDAE 535 DAE Sbjct: 1056 RDAE 1059 [190][TOP] >UniRef100_B4YVX9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne fallax RepID=B4YVX9_9BILA Length = 219 Score = 157 bits (396), Expect = 6e-37 Identities = 79/124 (63%), Positives = 98/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R++L S + +H+L +AF WLL E+E RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [191][TOP] >UniRef100_B4YVX6 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne fallax RepID=B4YVX6_9BILA Length = 219 Score = 157 bits (396), Expect = 6e-37 Identities = 79/124 (63%), Positives = 98/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R++L S + +H+L +AF WLL E+E RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [192][TOP] >UniRef100_B4YVX4 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne chitwoodi RepID=B4YVX4_MELCH Length = 219 Score = 157 bits (396), Expect = 6e-37 Identities = 79/124 (63%), Positives = 98/124 (79%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R++L S + +H+L +AF WLL E+E RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [193][TOP] >UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis RepID=Q4P7Q0_USTMA Length = 1774 Score = 157 bits (396), Expect = 6e-37 Identities = 84/169 (49%), Positives = 115/169 (68%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DLSP++++ G+ +L R V+ D D I+RE AQ Sbjct: 991 TDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE----------------------AQ 1023 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 +NATLLF++H+R+ L SK+V+ +H + ++A+ W+L EIE +F +++A GEM G AAQS Sbjct: 1024 MNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGEMCGTLAAQS 1083 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN ++ KTPS+ VYL Sbjct: 1084 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYL 1132 [194][TOP] >UniRef100_B4YVX0 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne hapla RepID=B4YVX0_MELHA Length = 219 Score = 156 bits (395), Expect = 8e-37 Identities = 80/124 (64%), Positives = 96/124 (77%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL +L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTAFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [195][TOP] >UniRef100_B4YVU7 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne javanica RepID=B4YVU7_MELJA Length = 219 Score = 156 bits (395), Expect = 8e-37 Identities = 80/124 (64%), Positives = 96/124 (77%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ Q NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQTQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [196][TOP] >UniRef100_B4YVU9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne javanica RepID=B4YVU9_MELJA Length = 219 Score = 156 bits (394), Expect = 1e-36 Identities = 80/124 (64%), Positives = 96/124 (77%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCPLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [197][TOP] >UniRef100_B4YVW8 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne hapla RepID=B4YVW8_MELHA Length = 219 Score = 155 bits (393), Expect = 1e-36 Identities = 80/124 (64%), Positives = 96/124 (77%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYA VSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYASVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [198][TOP] >UniRef100_B4YVV9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne incognita RepID=B4YVV9_MELIC Length = 219 Score = 155 bits (393), Expect = 1e-36 Identities = 80/124 (64%), Positives = 96/124 (77%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE R A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRLCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [199][TOP] >UniRef100_B4YVV3 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne javanica RepID=B4YVV3_MELJA Length = 219 Score = 155 bits (393), Expect = 1e-36 Identities = 80/124 (64%), Positives = 96/124 (77%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + +H+L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPR +EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRRKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [200][TOP] >UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus redivivus RepID=A9QMH0_PANRE Length = 636 Score = 155 bits (393), Expect = 1e-36 Identities = 78/125 (62%), Positives = 98/125 (78%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 ++S AQ NATLL + +R++ A+K V ++LT +AF W++ EIE+RF QA+ GEMV Sbjct: 238 KISRQAQENATLLMNILLRSTFATKQVAEVYKLTNEAFEWIIGEIESRFNQAIVQPGEMV 297 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 G AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G+A Sbjct: 298 GPLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLTGEA 357 Query: 521 VHDAE 535 E Sbjct: 358 TRKPE 362 [201][TOP] >UniRef100_B4YVX5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne chitwoodi RepID=B4YVX5_MELCH Length = 219 Score = 155 bits (392), Expect = 2e-36 Identities = 78/124 (62%), Positives = 97/124 (78%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 + + AQ NAT+L + +R++L S + +H+L +AF WLL E+E RF A+ GEMVG Sbjct: 2 IGKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [202][TOP] >UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0DB45_LACBS Length = 1742 Score = 155 bits (392), Expect = 2e-36 Identities = 88/169 (52%), Positives = 107/169 (63%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P IV GV L R V+ D+ LS AQ Sbjct: 986 SDLEPGYIVDGVNELCGRLVVVRGDDP---------------------------LSREAQ 1018 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 LNATL F++H+RA+ AS+ VL + LTR+AF W++ E+E +F Q++ GEM G AAQS Sbjct: 1019 LNATLTFRMHLRATFASRRVLEKFHLTREAFDWVMGEVETKFNQSVVHPGEMCGTLAAQS 1078 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+ KTPSL V+L Sbjct: 1079 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVHL 1127 [203][TOP] >UniRef100_B4YVX8 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne chitwoodi RepID=B4YVX8_MELCH Length = 219 Score = 155 bits (391), Expect = 2e-36 Identities = 78/123 (63%), Positives = 97/123 (78%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R++L S + +H+L +AF WLL E+E RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121 Query: 524 HDA 532 DA Sbjct: 122 KDA 124 [204][TOP] >UniRef100_B4YVU5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne arenaria RepID=B4YVU5_MELAR Length = 219 Score = 155 bits (391), Expect = 2e-36 Identities = 80/124 (64%), Positives = 96/124 (77%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NAT+L + +R+ L S + + +L +AF WLL EIE RF A+ GEMVG Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQRKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [205][TOP] >UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q5I6_MALGO Length = 1607 Score = 155 bits (391), Expect = 2e-36 Identities = 85/169 (50%), Positives = 111/169 (65%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDLSP +IV G++ +L+ V+ D+ ++S Q Sbjct: 784 SDLSPFEIVDGLKRVLNNLLVVRGDD---------------------------KISRVMQ 816 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF++H+R+ L SK V+ H LTR+A+ W+L EIE +F +++A GEM G AAQS Sbjct: 817 ENATLLFKIHLRSFLCSKQVIEVHHLTREAWEWVLGEIEGQFARSVAQPGEMCGTLAAQS 876 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN ++ KTPS+ VYL Sbjct: 877 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYL 925 [206][TOP] >UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum RepID=A9QMR7_9BILA Length = 614 Score = 154 bits (390), Expect = 3e-36 Identities = 90/176 (51%), Positives = 110/176 (62%) Frame = +2 Query: 8 LSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLN 187 LSP +++ GV L R V+ S ED +S+ AQ N Sbjct: 199 LSPLRVIEGVRELTARL-VIVSGED--------------------------HISQHAQEN 231 Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367 ATLL ++ +R++L S+ + +HRL +AF WLL E+ RFQQA A AAQS+G Sbjct: 232 ATLLIKILLRSTLCSRKMAEQHRLNAEAFEWLLGEVXTRFQQAXXXXXXXXXALAAQSLG 291 Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+LRG A DAE Sbjct: 292 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLRGAAAKDAE 347 [207][TOP] >UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JYP8_SCHJY Length = 1748 Score = 154 bits (390), Expect = 3e-36 Identities = 88/169 (52%), Positives = 107/169 (63%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL PS I+ GV L+ + V D D KE+ E Sbjct: 982 TDLLPSDIIYGVRNLISKLSVFRGD-----------------------DRITKEIQE--- 1015 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ+ +R+ LA+K V+ E+ L + AF W++ EIE RFQQ GEMVG AAQS Sbjct: 1016 -NATLLFQILLRSKLATKRVVMEYHLNKIAFEWIIGEIEARFQQCQVNPGEMVGTLAAQS 1074 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTPSL +YL Sbjct: 1075 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYL 1123 [208][TOP] >UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N128_COPC7 Length = 1642 Score = 154 bits (390), Expect = 3e-36 Identities = 76/116 (65%), Positives = 97/116 (83%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 LS+ AQ N+TLLF++H+RA+ A++ V+ + RLTR+AF W+L EIE +F Q++A GEM G Sbjct: 960 LSKEAQDNSTLLFRMHLRATFAARKVIEQMRLTREAFEWILGEIETKFNQSIAHPGEMCG 1019 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+ KTPSL ++L+ Sbjct: 1020 TLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTIHLQ 1075 [209][TOP] >UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC 6260 RepID=UPI000151A8B3 Length = 1018 Score = 154 bits (389), Expect = 4e-36 Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 5/177 (2%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184 +I++ + L H R SD E V + +++L G + L + +Q Sbjct: 229 RIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSP---------LVKESQE 279 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 NATLLFQ VR+ LA++ V+ E RL R +F W + EIE +FQ++L GEMVG AAQSI Sbjct: 280 NATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSI 339 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL D D E Sbjct: 340 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKDIAADIE 396 [210][TOP] >UniRef100_B4YVV2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne javanica RepID=B4YVV2_MELJA Length = 219 Score = 154 bits (389), Expect = 4e-36 Identities = 80/124 (64%), Positives = 94/124 (75%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ N T+L +R+ L S + +H+L +AF WLL EIE RF A GEMVG Sbjct: 2 ISKQAQENTTILMNTLLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTATVQPGEMVG 61 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 62 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121 Query: 524 HDAE 535 DAE Sbjct: 122 KDAE 125 [211][TOP] >UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1 Tax=Pichia guilliermondii RepID=RPB1_PICGU Length = 1579 Score = 154 bits (389), Expect = 4e-36 Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 5/177 (2%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184 +I++ + L H R SD E V + +++L G + L + +Q Sbjct: 795 RIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSP---------LVKESQE 845 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 NATLLFQ VR+ LA++ V+ E RL R +F W + EIE +FQ++L GEMVG AAQSI Sbjct: 846 NATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSI 905 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL D D E Sbjct: 906 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKDIAADIE 962 [212][TOP] >UniRef100_A9QMH2 RNA polymerase 2 (Fragment) n=1 Tax=Brevibucca saprophaga RepID=A9QMH2_9BILA Length = 386 Score = 154 bits (388), Expect = 5e-36 Identities = 78/108 (72%), Positives = 89/108 (82%) Frame = +2 Query: 212 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 391 +R++L SK V +H+L +AF WLL EIE +F QA+A GEMVGA AAQS+GEPATQMTL Sbjct: 4 LRSTLCSKKVAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQSLGEPATQMTL 63 Query: 392 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 NTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G AV DAE Sbjct: 64 NTFHYAGVSAKNVTLGVPRLKEIINVSKNPKTPSLTVFLTGGAVKDAE 111 [213][TOP] >UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054 RepID=UPI0000F24379 Length = 1739 Score = 153 bits (387), Expect = 7e-36 Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 5/168 (2%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184 +I++ + + H R SD + V ++ ++L G EL + AQ Sbjct: 963 RIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDT---------ELVKEAQA 1013 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 NATLLFQ VR+ LAS+ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSI Sbjct: 1014 NATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSI 1073 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYL 1121 [214][TOP] >UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299 RepID=C1EA31_9CHLO Length = 1720 Score = 153 bits (387), Expect = 7e-36 Identities = 78/122 (63%), Positives = 98/122 (80%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 LS AQ NAT+LF VR++L++K V+SE RL+ AF W++ E+E+RF+ ALAP G+ +G Sbjct: 1008 LSVEAQRNATILFFALVRSTLSAKRVMSEFRLSPAAFNWVIGEVESRFKVALAPPGDGIG 1067 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+IN++K+ KTPSL V LR D Sbjct: 1068 TVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKKIKTPSLTVALRKDLA 1127 Query: 524 HD 529 D Sbjct: 1128 GD 1129 [215][TOP] >UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis RepID=A3GID7_PICST Length = 1739 Score = 153 bits (387), Expect = 7e-36 Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 5/168 (2%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184 +I++ + + H R SD + V ++ ++L G EL + AQ Sbjct: 963 RIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDT---------ELVKEAQA 1013 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 NATLLFQ VR+ LAS+ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSI Sbjct: 1014 NATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSI 1073 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYL 1121 [216][TOP] >UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii CBS767 RepID=UPI00003BD271 Length = 1749 Score = 153 bits (386), Expect = 9e-36 Identities = 87/180 (48%), Positives = 117/180 (65%), Gaps = 8/180 (4%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK--------ELSET 175 +I++ + + H R SD +D + R G QD K L++ Sbjct: 968 RIIQNAQQIFHNGRHKASD--LRLDEVVR----------GVQDLCTKLLVIRGKTALTKE 1015 Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355 AQ NATLLFQ +R+ LA++ V+ E +L+R +F W++ EIE +FQ+++ GEMVG AA Sbjct: 1016 AQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAA 1075 Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 QSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL ++ D E Sbjct: 1076 QSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKESAADIE 1135 [217][TOP] >UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis longespiculosa RepID=A9QMG5_9BILA Length = 623 Score = 153 bits (386), Expect = 9e-36 Identities = 86/178 (48%), Positives = 111/178 (62%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 ++LSP +++ GV L R ++ S ED +S+ AQ Sbjct: 211 TNLSPLRVIEGVRELSKRL-IIVSGED--------------------------RISQQAQ 243 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLL + +R++L SK + +H+L ++ F WLL EIE+RFQQA+ G A QS Sbjct: 244 YNATLLMNILLRSTLCSKQMAEKHKLNQEGFEWLLGEIEHRFQQAIVXXXXXXGXLAXQS 303 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK KTPSL V+L G + DAE Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLTGSSAKDAE 361 [218][TOP] >UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii RepID=B5RSM9_DEBHA Length = 1749 Score = 153 bits (386), Expect = 9e-36 Identities = 87/180 (48%), Positives = 117/180 (65%), Gaps = 8/180 (4%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK--------ELSET 175 +I++ + + H R SD +D + R G QD K L++ Sbjct: 968 RIIQNAQQIFHNGRHKASD--LRLDEVVR----------GVQDLCTKLLVIRGKTALTKE 1015 Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355 AQ NATLLFQ +R+ LA++ V+ E +L+R +F W++ EIE +FQ+++ GEMVG AA Sbjct: 1016 AQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAA 1075 Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 QSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL ++ D E Sbjct: 1076 QSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKESAADIE 1135 [219][TOP] >UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO Length = 1752 Score = 153 bits (386), Expect = 9e-36 Identities = 85/169 (50%), Positives = 108/169 (63%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL PS I+ G+ L+ + + D I R++ Q Sbjct: 982 TDLLPSDIINGLNELIAKLTIFRGS-----DRITRDV----------------------Q 1014 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLFQ+ +R+ A K V+ E+RL + AF W++ E+E RFQQA+ GEMVG AAQS Sbjct: 1015 NNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQS 1074 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTPSL +YL Sbjct: 1075 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYL 1123 [220][TOP] >UniRef100_A9QME9 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata RepID=A9QME9_9BILA Length = 378 Score = 152 bits (385), Expect = 1e-35 Identities = 76/108 (70%), Positives = 89/108 (82%) Frame = +2 Query: 212 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 391 +R++L SK + + H+L +AF WLL E+E RFQQA+A GEMVGA AAQS+GEPATQMTL Sbjct: 4 IRSTLCSKKMATSHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMTL 63 Query: 392 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 NTFHYAGVSAKNVTLGVPRL+EIINVSK KTPSL +L+G A DAE Sbjct: 64 NTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTCFLQGAAAKDAE 111 [221][TOP] >UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115 RepID=C4R4Y0_PICPG Length = 1743 Score = 152 bits (385), Expect = 1e-35 Identities = 81/125 (64%), Positives = 95/125 (76%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 EL + AQ NAT LFQ VRA LA++ +L E RL R AF W+L IE +FQ++L GEMV Sbjct: 1007 ELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMV 1066 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 G AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL + Sbjct: 1067 GVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDREI 1126 Query: 521 VHDAE 535 D E Sbjct: 1127 ALDIE 1131 [222][TOP] >UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CBQ3_YARLI Length = 1750 Score = 152 bits (384), Expect = 1e-35 Identities = 86/178 (48%), Positives = 109/178 (61%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL+ +IV GV+ L R ++ D L++ AQ Sbjct: 983 SDLTIPEIVEGVQSLCKRLTIVRGDSS---------------------------LAKEAQ 1015 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT+LFQ VR+ +K V+ E+RL R AF W++ EIE +F +++ GEMVG AAQS Sbjct: 1016 ENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVGVIAAQS 1075 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL D E Sbjct: 1076 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPSVAADIE 1133 [223][TOP] >UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BQ02_THAPS Length = 1627 Score = 152 bits (383), Expect = 2e-35 Identities = 87/178 (48%), Positives = 107/178 (60%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 S+L P ++ +E +L R V+ D+ LS AQ Sbjct: 998 SNLHPKDVIEKIEAMLRRLVVVVGDD---------------------------LLSVEAQ 1030 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT L+++ +R+ LASK VL E+RL+ A W+L EIE RF A GEM G AAQS Sbjct: 1031 NNATTLYRILIRSYLASKRVLREYRLSEAALIWVLGEIEARFHHAKVSPGEMAGVLAAQS 1090 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTP L +YL+ DA+ Sbjct: 1091 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQNHVSGDAD 1148 [224][TOP] >UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba castellanii RepID=O00820_ACACA Length = 1569 Score = 152 bits (383), Expect = 2e-35 Identities = 87/178 (48%), Positives = 111/178 (62%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P +IV + L+ R V+ +D +S+ AQ Sbjct: 909 SDLDPCQIVEDLGNLIERLVVIPGQDD---------------------------ISKEAQ 941 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NA LLF + +R +LAS+ VL E+RL + ++ WLL EI +RF ++L GEM+GA AAQS Sbjct: 942 ANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCDPGEMIGALAAQS 1001 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+IN++K KTPSL VYL D E Sbjct: 1002 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKTIKTPSLTVYLEPHCSRDHE 1059 [225][TOP] >UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus oxycercus RepID=A9QMS4_9BILA Length = 612 Score = 152 bits (383), Expect = 2e-35 Identities = 76/125 (60%), Positives = 97/125 (77%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 ++S+ AQ NATLL + +R++L SK V +HRL ++AF ++L EIENRFQ+A+ Sbjct: 233 KISQQAQYNATLLMNILIRSTLCSKQVAEKHRLNQEAFEYILGEIENRFQRAIVXXXXXX 292 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 G AQ +G+PATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVSK+ KTPSL V+L+G A Sbjct: 293 GVLXAQXLGQPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAA 352 Query: 521 VHDAE 535 DAE Sbjct: 353 TKDAE 357 [226][TOP] >UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36 RepID=B9WN64_CANDC Length = 1735 Score = 152 bits (383), Expect = 2e-35 Identities = 85/177 (48%), Positives = 114/177 (64%), Gaps = 5/177 (2%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184 +I++ + + H R SD E V + +++L G L + AQ Sbjct: 963 RIIQNAQQIFHNGRYRASDLRLEEIIFGVRELCKKLLVVRGDTP---------LVKEAQE 1013 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 NATLLFQ +R+ LA++ V+ E +L R +F W+L EIE +FQ+++ GEMVG AAQSI Sbjct: 1014 NATLLFQCLLRSRLAARRVIEEFKLNRVSFEWVLGEIETQFQKSIVHPGEMVGVVAAQSI 1073 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP++ VYL + D E Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVYLDPEVASDIE 1130 [227][TOP] >UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus RepID=A5E6J4_LODEL Length = 1745 Score = 152 bits (383), Expect = 2e-35 Identities = 78/124 (62%), Positives = 95/124 (76%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 L + AQ NATLLFQ VR+ LAS+ V+ E +L + +F W L EIE +FQ+++ GEMVG Sbjct: 1001 LMKEAQENATLLFQCLVRSRLASRRVIEEFKLNKASFEWALGEIETQFQKSVVHPGEMVG 1060 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL + Sbjct: 1061 VVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPEVA 1120 Query: 524 HDAE 535 D E Sbjct: 1121 SDIE 1124 [228][TOP] >UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MI48_9CHLO Length = 1694 Score = 151 bits (381), Expect = 3e-35 Identities = 76/123 (61%), Positives = 98/123 (79%) Frame = +2 Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340 ELS AQ N+T+LF VR++L++K V+ + +L+ AF W++ E+E+RF+ ALAP G+ + Sbjct: 1009 ELSLEAQRNSTILFFALVRSTLSAKRVMKDFKLSPAAFNWVVGEVESRFKMALAPPGDGI 1068 Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520 G AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K+ KTPSL V LR D Sbjct: 1069 GTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKKIKTPSLTVALRKDL 1128 Query: 521 VHD 529 D Sbjct: 1129 AGD 1131 [229][TOP] >UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis macrandra RepID=Q9C428_9FUNG Length = 1603 Score = 151 bits (381), Expect = 3e-35 Identities = 89/172 (51%), Positives = 108/172 (62%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 S+L P +IVR V LL R V+T ++ LS AQ Sbjct: 925 SNLRPEEIVRDVNDLLSRCIVITGEDG---------------------------LSTMAQ 957 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF + VR LA+K V +EHRL R AF WL+ EIE+RF+ A EMVG AAQS Sbjct: 958 HNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLIGEIESRFKAAKVNPAEMVGTIAAQS 1017 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517 IGEPATQMTLNTFH+AGV +KNVTLGVPRL+EIINV+ +TPSL+V L+ + Sbjct: 1018 IGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVATNLRTPSLLVCLKAN 1069 [230][TOP] >UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y5N4_CLAL4 Length = 1402 Score = 150 bits (378), Expect = 7e-35 Identities = 84/177 (47%), Positives = 116/177 (65%), Gaps = 5/177 (2%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184 +I++ + + H R SD + V A+ ++L G + L++ AQ Sbjct: 922 RIIQNAQQIFHSGRQRASDLKLDEIVEGVKALCSKLLVIRGKS---------RLAKEAQE 972 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 +ATLLFQ VR+ LA++ ++ E +L+R +F W+ EIE +FQ+++ GEMVG AAQSI Sbjct: 973 DATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGEIETQFQKSIVHPGEMVGVIAAQSI 1032 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL + D E Sbjct: 1033 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPEIASDIE 1089 [231][TOP] >UniRef100_C5LSN9 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSN9_9ALVE Length = 1667 Score = 149 bits (376), Expect = 1e-34 Identities = 85/172 (49%), Positives = 106/172 (61%) Frame = +2 Query: 14 PSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 193 P ++V+ VE L R RV+ D +V L AQ NAT Sbjct: 1019 PQEVVQKVEETLDRLRVIRGLTDDQV------------------------LGWEAQHNAT 1054 Query: 194 LLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEP 373 ++ Q H+R LAS+ +L RL ++A WLL E+E RF+++L AGE VG AAQSIGEP Sbjct: 1055 VVLQAHLRYHLASRKLLERDRLGQRAVDWLLGEVEQRFEKSLVAAGESVGTIAAQSIGEP 1114 Query: 374 ATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529 ATQMTLNTFH+AGV +KNVTLGVPRL+EIINV+K KTPS+ VYL D D Sbjct: 1115 ATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVAKNLKTPSMTVYLHPDYASD 1166 [232][TOP] >UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans RepID=Q5ACI7_CANAL Length = 1728 Score = 149 bits (376), Expect = 1e-34 Identities = 83/177 (46%), Positives = 113/177 (63%), Gaps = 5/177 (2%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184 +I++ + + H R SD E V + ++L G L + AQ Sbjct: 963 RIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGDTP---------LVKEAQE 1013 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 NATLLFQ +R+ LA++ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSI Sbjct: 1014 NATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSI 1073 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP++ V+L + D E Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVFLDPEVASDIE 1130 [233][TOP] >UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans RepID=C4YN85_CANAL Length = 1742 Score = 149 bits (376), Expect = 1e-34 Identities = 83/177 (46%), Positives = 113/177 (63%), Gaps = 5/177 (2%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184 +I++ + + H R SD E V + ++L G L + AQ Sbjct: 963 RIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGDTP---------LVKEAQE 1013 Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364 NATLLFQ +R+ LA++ V+ E +L R +F W++ EIE +FQ+++ GEMVG AAQSI Sbjct: 1014 NATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSI 1073 Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP++ V+L + D E Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVFLDPEVASDIE 1130 [234][TOP] >UniRef100_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cryptosporidium parvum Iowa II RepID=Q5CUJ2_CRYPV Length = 1902 Score = 148 bits (374), Expect = 2e-34 Identities = 74/119 (62%), Positives = 92/119 (77%) Frame = +2 Query: 179 QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQ 358 Q NAT L +H+R+SLASK +L RL AF W+L EIE++F ++LA +GEMVG AAQ Sbjct: 1066 QKNATTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQ 1125 Query: 359 SIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 SIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K +TP+L VYL +D E Sbjct: 1126 SIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQE 1184 [235][TOP] >UniRef100_Q5CH45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis RepID=Q5CH45_CRYHO Length = 1895 Score = 148 bits (374), Expect = 2e-34 Identities = 74/119 (62%), Positives = 92/119 (77%) Frame = +2 Query: 179 QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQ 358 Q NAT L +H+R+SLASK +L RL AF W+L EIE++F ++LA +GEMVG AAQ Sbjct: 1059 QKNATTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQ 1118 Query: 359 SIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 SIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K +TP+L VYL +D E Sbjct: 1119 SIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQE 1177 [236][TOP] >UniRef100_A9UED6 RNA polymerase 2 largest subunit (Fragment) n=1 Tax=Diploscapter sp. JU359 RepID=A9UED6_9BILA Length = 374 Score = 148 bits (373), Expect = 3e-34 Identities = 75/108 (69%), Positives = 89/108 (82%) Frame = +2 Query: 212 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 391 +R++L SK + ++L +AF WLL E+E RF QA+A GEMVGA AAQS+GEPATQMTL Sbjct: 5 LRSTLCSKKMGMAYKLDSEAFEWLLGEVEQRFNQAIAQPGEMVGALAAQSLGEPATQMTL 64 Query: 392 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 NTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A DAE Sbjct: 65 NTFHYAGVSAKNVTLGVPRLKEIINVSKKLKTPSLTVFLQGAAAKDAE 112 [237][TOP] >UniRef100_A9QMF7 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera pseudoteres RepID=A9QMF7_9PELO Length = 366 Score = 148 bits (373), Expect = 3e-34 Identities = 74/106 (69%), Positives = 87/106 (82%) Frame = +2 Query: 218 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 397 ++L SK + +H+L AF WLL EIE+RFQQA+ GEMVGA AAQS+GEPATQMTLNT Sbjct: 1 STLCSKQMADKHKLNESAFDWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMTLNT 60 Query: 398 FHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 FH+AGVSAKNVTLGVPRL+EIINVSK +TPSL V+L+G A DAE Sbjct: 61 FHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAAKDAE 106 [238][TOP] >UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR Length = 1748 Score = 148 bits (373), Expect = 3e-34 Identities = 82/178 (46%), Positives = 112/178 (62%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P++++ V+ LL R ++ D+ +S+ AQ Sbjct: 999 SDLHPAEVIPQVQALLDRLLIVRGDDP---------------------------ISQEAQ 1031 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF+ +R+ LA + +++E+ + + AF ++ IE+RF +A APAGEMVG AAQS Sbjct: 1032 ENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKANAPAGEMVGVLAAQS 1091 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+ KTPS+ VY HD E Sbjct: 1092 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEPGRTHDKE 1149 [239][TOP] >UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina RepID=B2AA31_PODAN Length = 1748 Score = 147 bits (371), Expect = 5e-34 Identities = 82/169 (48%), Positives = 108/169 (63%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL+P ++ V+ LL R V+ ++ ELS A Sbjct: 995 SDLTPKDVIPAVQALLARMVVVRGED---------------------------ELSREAD 1027 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT+LF++ +R+ LA K + E RL + AF +L E+ENR+ +++ GEMVG AAQS Sbjct: 1028 YNATILFKIQIRSRLAFKRLAVEQRLNKLAFDHVLGELENRWSRSMVSPGEMVGVLAAQS 1087 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+K KTPS+VVYL Sbjct: 1088 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKTPSMVVYL 1136 [240][TOP] >UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3RM26_TRIAD Length = 1784 Score = 146 bits (369), Expect = 8e-34 Identities = 79/124 (63%), Positives = 93/124 (75%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 +S+ AQ NATLLF + +R+ L+SK V E+ LT +AF WL+ E++ GEMVG Sbjct: 1017 ISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEVQ---------PGEMVG 1067 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523 AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V L G A Sbjct: 1068 PLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVILTGPAA 1127 Query: 524 HDAE 535 DAE Sbjct: 1128 RDAE 1131 [241][TOP] >UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR Length = 1706 Score = 146 bits (368), Expect = 1e-33 Identities = 82/176 (46%), Positives = 108/176 (61%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 +DL P+++++ V LL R V+ ++ V+A Q Sbjct: 936 TDLHPTEVIQIVNNLLERLIVVVGNDPLSVEA---------------------------Q 968 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT L+++ +R L+SK VL + RL++ A W++ EIE RF A+ GEM G AAQS Sbjct: 969 SNATTLYRILIRTMLSSKRVLKDWRLSKAALNWVVGEIETRFNIAMVNPGEMAGVLAAQS 1028 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529 IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K KTP L +YL+ + D Sbjct: 1029 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTPKTPGLTIYLQEEVSGD 1084 [242][TOP] >UniRef100_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AG69_9CRYT Length = 1927 Score = 145 bits (367), Expect = 1e-33 Identities = 83/174 (47%), Positives = 113/174 (64%) Frame = +2 Query: 14 PSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 193 P I++ VE LL + +L + D + LPP D + E+ Q NAT Sbjct: 1020 PVTIIKQVEGLLDK--LLLWKNMSTKDNLDNPKLPPTF------DNIIAEV----QKNAT 1067 Query: 194 LLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEP 373 L +H+R++LASK +L RL AF W++ EI+++F ++LA +GEMVG AAQSIGEP Sbjct: 1068 TLLGIHIRSALASKKILEIDRLGPTAFEWVIGEIQHQFYRSLAHSGEMVGTIAAQSIGEP 1127 Query: 374 ATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 ATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K +TP+L +YL +D E Sbjct: 1128 ATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTIYLENSIANDQE 1181 [243][TOP] >UniRef100_UPI000187E3DF hypothetical protein MPER_04443 n=1 Tax=Moniliophthora perniciosa FA553 RepID=UPI000187E3DF Length = 343 Score = 145 bits (365), Expect = 2e-33 Identities = 83/165 (50%), Positives = 104/165 (63%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P+ IV V+ L R V+ ++D LS AQ Sbjct: 187 SDLEPAYIVDAVKALCERLIVVRGNDD---------------------------LSREAQ 219 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATL F++H+RA+ AS+ VL + L R+AF W+L E+E++F Q+L GEM G AAQS Sbjct: 220 DNATLRFRMHLRATFASRRVLEKFHLNREAFEWVLGEVESKFNQSLVNPGEMCGTLAAQS 279 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSL 496 IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EII V+ KTPS+ Sbjct: 280 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIIYVATHIKTPSV 324 [244][TOP] >UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H9U6_PENCW Length = 1733 Score = 145 bits (365), Expect = 2e-33 Identities = 81/178 (45%), Positives = 112/178 (62%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P++++ V+ LL R ++ ++ +S+ AQ Sbjct: 995 SDLHPAEVIPQVQQLLDRLVIVRGNDP---------------------------ISQEAQ 1027 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 +NATLLF+ +R+ LA + +++++ L + AF +L IE+RF +A A GEMVG AAQS Sbjct: 1028 VNATLLFKAQLRSRLAFRRLVTDYSLNKLAFQHVLGAIESRFARAAANPGEMVGVLAAQS 1087 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+ KTPS+ VY G HD E Sbjct: 1088 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEGVKTHDKE 1145 [245][TOP] >UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SR21_9PEZI Length = 1756 Score = 144 bits (363), Expect = 4e-33 Identities = 85/178 (47%), Positives = 111/178 (62%), Gaps = 1/178 (0%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL+P ++ V +L R V+ PDG LS+ A Sbjct: 994 SDLTPQDVIPAVSSMLDRMTVVRG---------------PDG------------LSKEAD 1026 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NAT+LF+ H+R+ LA K V RL + AF+ +L E+E R+ +A GEMVG AAQS Sbjct: 1027 YNATILFKAHIRSRLAFKGVACLQRLNKLAFSHVLGELEGRWAKASISPGEMVGVLAAQS 1086 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL-RGDAVHDA 532 IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+++ KTPS+VVYL G+A +A Sbjct: 1087 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNIKTPSMVVYLSEGNATQEA 1144 [246][TOP] >UniRef100_A9BLB7 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BLB7_9CRYP Length = 1464 Score = 144 bits (362), Expect = 5e-33 Identities = 68/112 (60%), Positives = 93/112 (83%) Frame = +2 Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355 ++LNATLLF++ +R+ LASK++ +++ ++ AF W+L EI ++++++A GEMVG +A Sbjct: 1011 SRLNATLLFRIFLRSKLASKIIFFKYKFSKVAFLWVLNEICTQYRKSIASPGEMVGTISA 1070 Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 QSIG+PATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV + KTPSL +Y R Sbjct: 1071 QSIGQPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVLQTVKTPSLTIYFR 1122 [247][TOP] >UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus RepID=A1CNZ4_ASPCL Length = 1765 Score = 144 bits (362), Expect = 5e-33 Identities = 83/178 (46%), Positives = 109/178 (61%) Frame = +2 Query: 2 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181 SDL P+++V V+ LL R V+ D+ +S AQ Sbjct: 1001 SDLHPAEVVPQVQSLLDRLLVVRGDDP---------------------------ISHEAQ 1033 Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361 NATLLF+ +R+ LA + +++E+ + + AF +L IE+RF +A A GEMVG AAQS Sbjct: 1034 ENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIESRFAKAAASPGEMVGVLAAQS 1093 Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+ KTPS+ VY HD E Sbjct: 1094 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQMPSKCHDKE 1151 [248][TOP] >UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus RepID=Q9BMP2_STYMT Length = 1678 Score = 143 bits (361), Expect = 7e-33 Identities = 69/112 (61%), Positives = 92/112 (82%) Frame = +2 Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355 A ++T LF++++R+ L SK V+ + RL++ AF W+L EI++RF QAL GEMVG+ A Sbjct: 926 ANSDSTWLFKIYLRSLLNSKAVIQQERLSKDAFNWILGEIKSRFDQALVNPGEMVGSIGA 985 Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511 QS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K KTPS+ ++L+ Sbjct: 986 QSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKNIKTPSMKIFLK 1037 [249][TOP] >UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii RepID=A1YIA7_ISSOR Length = 1647 Score = 143 bits (361), Expect = 7e-33 Identities = 82/172 (47%), Positives = 108/172 (62%) Frame = +2 Query: 20 KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLL 199 +IV+ + + H R SD E + + L + L E E N+TLL Sbjct: 886 RIVQNAQQIFHVDRYKASDLTIEEIVKSVQELCKKFTVVRGDGGCLTEARE----NSTLL 941 Query: 200 FQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 379 FQ +R+ LA++ VL E++L + AF W++ I +F ++L GEMVG AAQSIGEPAT Sbjct: 942 FQCLIRSKLATRRVLEEYKLNKDAFEWVVGTIAQQFARSLVNPGEMVGVVAAQSIGEPAT 1001 Query: 380 QMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535 QMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K KTP+L VYL + D E Sbjct: 1002 QMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNFKTPALTVYLEEEYATDIE 1053 [250][TOP] >UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8IRZ2_CHLRE Length = 1789 Score = 143 bits (360), Expect = 9e-33 Identities = 75/115 (65%), Positives = 88/115 (76%) Frame = +2 Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343 LS AQ NAT++F VR LASK V+SE++L KA WLL E+E RF A A AGE VG Sbjct: 1022 LSVEAQRNATIMFHSLVRMHLASKRVMSEYKLNNKALDWLLGELETRFFLAQAHAGECVG 1081 Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508 AAQS+GEP TQMTLNTFH+AGVSAKNVTLGVPRL E+IN++K KTP+L V+L Sbjct: 1082 TVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTELINLAKNIKTPTLTVHL 1136