AU195411 ( PFL074f04_r )

[UP]


[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
            RepID=O04142_PORYE
          Length = 1685

 Score =  342 bits (877), Expect = 1e-92
 Identities = 178/178 (100%), Positives = 178/178 (100%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ
Sbjct: 914  SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 973

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS
Sbjct: 974  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 1033

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE
Sbjct: 1034 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 1091

[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
            RepID=O09451_9FLOR
          Length = 1732

 Score =  194 bits (493), Expect = 3e-48
 Identities = 105/181 (58%), Positives = 126/181 (69%), Gaps = 3/181 (1%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA---LKELSE 172
            SDL P ++++GV +LL RTRVL   ++A ++  A E    +     P DE    +  L +
Sbjct: 897  SDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPGMEEDDEGNPIDEKPTMVDPLMK 956

Query: 173  TAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATA 352
             AQ NATLLFQ+H+R+ LA K ++  HRLT KAF WLL E+ENRF       GE +GA A
Sbjct: 957  EAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLWLLGEVENRFMMCRVAPGENIGAIA 1016

Query: 353  AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDA 532
            AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK TKTPSL VYL+     D 
Sbjct: 1017 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKNTKTPSLTVYLKSQYAGDK 1076

Query: 533  E 535
            E
Sbjct: 1077 E 1077

[3][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score =  187 bits (476), Expect = 3e-46
 Identities = 106/191 (55%), Positives = 128/191 (67%), Gaps = 13/191 (6%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLT-------------SDEDAEVDAIAREMLPPDGSASGP 142
            SDL+P  I++GV++LL R  V+               D+ AEVD                
Sbjct: 973  SDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGDQVAEVDT--------------- 1017

Query: 143  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALA 322
             +   ++L+  AQ NATLL+ +H+RA LASKV+L E+RL +KAF  LL EIENRF  A  
Sbjct: 1018 -NSVSRQLAVEAQENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLLGEIENRFLHAKC 1076

Query: 323  PAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVV 502
            P GEM+GA A QSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K  KTPSL V
Sbjct: 1077 PPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKHCKTPSLTV 1136

Query: 503  YLRGDAVHDAE 535
            YLRG+A  DAE
Sbjct: 1137 YLRGEAARDAE 1147

[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
            uvarioides RepID=Q9AXN1_9FLOR
          Length = 1712

 Score =  181 bits (460), Expect = 2e-44
 Identities = 99/170 (58%), Positives = 123/170 (72%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL+P ++ +G+++LL RTRV+   +D + + +   +   +G     +  A     ET Q
Sbjct: 898  SDLTPVQVWKGIKMLLKRTRVVEIGDDQDDEDVDDGVTDENGEMIDRKPVADPLTLET-Q 956

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NAT++FQ+HVR+ LA K V+  HRL   AF W+L EIENRF  A+A  GE +GA AAQS
Sbjct: 957  ENATMIFQIHVRSMLACKQVMVRHRLDINAFLWILGEIENRFLGAIAAPGENIGAIAAQS 1016

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK TKTPSL VYLR
Sbjct: 1017 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVSKHTKTPSLTVYLR 1066

[5][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score =  179 bits (453), Expect = 1e-43
 Identities = 98/178 (55%), Positives = 121/178 (67%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP K++  ++ L  R  V+  ++                           +LS+ AQ
Sbjct: 1002 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E+RF  A A  GEMVGA AAQS
Sbjct: 1035 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQAARDAE 1152

[6][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score =  179 bits (453), Expect = 1e-43
 Identities = 98/178 (55%), Positives = 121/178 (67%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP K++  ++ L  R  V+  ++                           +LS+ AQ
Sbjct: 1003 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1035

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E+RF  A A  GEMVGA AAQS
Sbjct: 1036 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQS 1095

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A  DAE
Sbjct: 1096 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQAARDAE 1153

[7][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score =  176 bits (445), Expect = 1e-42
 Identities = 100/178 (56%), Positives = 120/178 (67%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P  I++GV LL  +  V+  ++   V+A                           Q
Sbjct: 989  SDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEA---------------------------Q 1021

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NAT+LFQ+ VR+ LASK VL+E+RLT  AF WLL EIE+RF QA+A  GEMVGA AAQS
Sbjct: 1022 ANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLLGEIESRFLQAIANPGEMVGAIAAQS 1081

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+K+ KTPSLVVYL+     D+E
Sbjct: 1082 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKKVKTPSLVVYLKEYCRRDSE 1139

[8][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
            RepID=UPI0000546D90
          Length = 1972

 Score =  174 bits (441), Expect = 4e-42
 Identities = 94/178 (52%), Positives = 120/178 (67%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DL+P+++V GV+ L  +  ++  D+                           +LS  AQ
Sbjct: 999  TDLNPARVVDGVKELSKKLVIVNGDD---------------------------QLSRQAQ 1031

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L SK +  E RL+ +AF WLL EIE +F Q++A  GEMVGA AAQS
Sbjct: 1032 ENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQS 1091

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A  DAE
Sbjct: 1092 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAE 1149

[9][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
            RepID=Q4SF83_TETNG
          Length = 1745

 Score =  173 bits (438), Expect = 8e-42
 Identities = 98/186 (52%), Positives = 122/186 (65%), Gaps = 8/186 (4%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK------- 160
            +DLSP ++V G+   +    +  S       +IA          SG  + + K       
Sbjct: 876  TDLSPLRVVEGILSSVSLNEICCSPPFTLNISIADIQFEHVFGLSGTHELSKKLVIVNGD 935

Query: 161  -ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEM 337
              LS  AQ NATLLF +H+R++L SK +  E RL+ +AF WLL EIE +F Q++A  GEM
Sbjct: 936  DPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEM 995

Query: 338  VGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517
            VGA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G 
Sbjct: 996  VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQ 1055

Query: 518  AVHDAE 535
            A  DAE
Sbjct: 1056 AARDAE 1061

[10][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=O01375_9BILA
          Length = 631

 Score =  172 bits (437), Expect = 1e-41
 Identities = 96/178 (53%), Positives = 119/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP +++ G+  L  +  V+ S ED                           +S+ AQ
Sbjct: 207 TDLSPVRVIEGIRELSKKL-VIVSGED--------------------------RISKQAQ 239

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK V S H+L  +AF WLL EIE+RF+QA+A  GEMVGA AAQS
Sbjct: 240 YNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAQPGEMVGALAAQS 299

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +YL G A  DAE
Sbjct: 300 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIYLTGAAARDAE 357

[11][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
           RepID=A9QMS7_9BILA
          Length = 407

 Score =  172 bits (437), Expect = 1e-41
 Identities = 97/178 (54%), Positives = 120/178 (67%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP K+++GV+ L  R  V+ S ED                          ++S+ AQ
Sbjct: 211 TDLSPLKVIQGVKDLTSRL-VIVSGED--------------------------KISQQAQ 243

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK +  +H+L  +AF WLL EIE +F QA+A  GEMVGA AAQS
Sbjct: 244 YNATLLMNILLRSTLCSKRLAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQS 303

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A  DAE
Sbjct: 304 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKNPKTPSLTVFLQGGAAKDAE 361

[12][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B0A92
          Length = 1714

 Score =  172 bits (436), Expect = 1e-41
 Identities = 94/178 (52%), Positives = 116/178 (65%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++V G   L  +  ++  D+                            LS  AQ
Sbjct: 980  TDLSPLRVVEGTHELSKKLVIVNGDDP---------------------------LSRQAQ 1012

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L SK +  E RL+ +AF WLL EIE +F Q++A  GEMVGA AAQS
Sbjct: 1013 QNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQS 1072

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A  DAE
Sbjct: 1073 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAE 1130

[13][TOP]
>UniRef100_Q6JU03 RNA polymerase II largest subunit (Fragment) n=1 Tax=Podura
           aquatica RepID=Q6JU03_9HEXA
          Length = 306

 Score =  172 bits (436), Expect = 1e-41
 Identities = 97/178 (54%), Positives = 116/178 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP ++V GVE LL +  V+  D+                            +S+ A 
Sbjct: 10  TDLSPFRVVEGVEDLLKKCIVVNGDDP---------------------------MSQKAN 42

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLFQ  VR++L S+ V  E RLT +AF WL+ EIE RFQQAL   GEMVGA AAQS
Sbjct: 43  ANATLLFQCLVRSTLCSRRVAEEFRLTTEAFEWLIGEIETRFQQALVQPGEMVGALAAQS 102

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVT GVPRL+EIIN+SKR K PSL V+L G A  DAE
Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTXGVPRLKEIINISKRPKAPSLTVFLTGAAARDAE 160

[14][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
          Length = 1935

 Score =  172 bits (436), Expect = 1e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 967  SDLHPIKVVEGVKKLSKKLVIVNGDDP---------------------------LSRQAQ 999

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1000 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1059

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1060 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1117

[15][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase II subunit A) (DNA-directed RNA polymerase III
            largest subunit) n=1 Tax=Equus caballus
            RepID=UPI0001796DD3
          Length = 1834

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[16][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
            isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
          Length = 1970

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[17][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
          Length = 1913

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[18][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2C
          Length = 1888

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[19][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2B
          Length = 1892

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154

[20][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2A
          Length = 1896

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154

[21][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B29
          Length = 1891

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 971  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1003

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1004 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1063

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1064 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1121

[22][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B28
          Length = 1908

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 988  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1020

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1021 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1080

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1081 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1138

[23][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 18 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B27
          Length = 1831

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[24][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 17 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B26
          Length = 1684

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 992  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1024

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1025 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1084

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1085 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1142

[25][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 16 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B25
          Length = 1752

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 992  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1024

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1025 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1084

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1085 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1142

[26][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B24
          Length = 1924

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154

[27][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 14 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B23
          Length = 1653

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 975  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1007

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1008 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1067

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1068 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1125

[28][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 13 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B22
          Length = 1722

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 975  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1007

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1008 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1067

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1068 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1125

[29][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B21
          Length = 1922

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[30][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B20
          Length = 1923

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1003 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1035

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1036 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1095

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1096 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1153

[31][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 10 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1F
          Length = 1840

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 998  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1031 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1148

[32][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 9 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1E
          Length = 1851

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 998  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1031 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1148

[33][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1D
          Length = 1764

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1020 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1052

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1053 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1112

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1113 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1170

[34][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 8 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1C
          Length = 1719

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 996  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1028

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1029 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1088

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1089 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1146

[35][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 7 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1B
          Length = 1858

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 996  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1028

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1029 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1088

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1089 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1146

[36][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1A
          Length = 1767

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 990  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1022

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1023 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1082

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1083 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1140

[37][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 5 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B19
          Length = 1693

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 988  SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1020

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1021 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1080

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1081 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1138

[38][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B17
          Length = 1788

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[39][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B16
          Length = 1922

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[40][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25C
          Length = 1968

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1004 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1036

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1037 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1096

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1097 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1154

[41][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25B
          Length = 1932

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[42][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
          Length = 1970

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[43][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
            familiaris RepID=UPI0001951285
          Length = 1969

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[44][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
          Length = 1966

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[45][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
            RepID=Q84KP6_CYAME
          Length = 1819

 Score =  172 bits (435), Expect = 2e-41
 Identities = 96/170 (56%), Positives = 113/170 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P +I++GV +LL R  V+  D+                           ELS  AQ
Sbjct: 993  SDLHPRQIIQGVRVLLQRCVVVPGDD---------------------------ELSREAQ 1025

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NA LLF  HVRA LA+K VL  HRL  KAF WLL EIE RF +A A  GEMVGA AAQS
Sbjct: 1026 RNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLLGEIETRFVRARATPGEMVGAVAAQS 1085

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INV+++ KTPS+ VYL+
Sbjct: 1086 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVARQAKTPSVTVYLK 1135

[46][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
           dermatitica RepID=A9QMG4_9PELO
          Length = 478

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 117/178 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           S L+P K+V GV+ L H+  ++  D+                            +S+ AQ
Sbjct: 193 SSLNPLKVVSGVKELSHKLVIVCGDD---------------------------RISKQAQ 225

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK +  +HRL  + F WLL EIE+RF QA+A  GEMVGA AAQS
Sbjct: 226 YNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQS 285

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A  DAE
Sbjct: 286 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGGAAKDAE 343

[47][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
           strongyloides dermatitica RepID=A9QMF0_9PELO
          Length = 633

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 117/178 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           S L+P K+V GV+ L H+  ++  D+                            +S+ AQ
Sbjct: 212 SSLNPLKVVSGVKELSHKLVIVCGDD---------------------------RISKQAQ 244

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK +  +HRL  + F WLL EIE+RF QA+A  GEMVGA AAQS
Sbjct: 245 YNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQS 304

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A  DAE
Sbjct: 305 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGGAAKDAE 362

[48][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
          Length = 1970

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[49][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
            RepID=RPB1_MOUSE
          Length = 1970

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[50][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
            RepID=RPB1_HUMAN
          Length = 1970

 Score =  172 bits (435), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHPIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[51][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
            RepID=B4MAN9_DROVI
          Length = 1889

 Score =  171 bits (434), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP +++RGV+ LL R  ++T ++                            +S+ A 
Sbjct: 994  TDLSPMRVIRGVKGLLERCVIVTGND---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[52][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4L732_DROMO
          Length = 1889

 Score =  171 bits (434), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP +++RGV+ LL R  ++T ++                            +S+ A 
Sbjct: 994  TDLSPMRVIRGVKGLLERCVIVTGND---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[53][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4JXA6_DROGR
          Length = 1889

 Score =  171 bits (434), Expect = 2e-41
 Identities = 94/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP +++RGV  LL+R  ++T ++                            +S+ A 
Sbjct: 994  TDLSPMRVIRGVSDLLNRCVIVTGND---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[54][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
           RepID=P91819_ZELPU
          Length = 629

 Score =  171 bits (433), Expect = 3e-41
 Identities = 96/177 (54%), Positives = 117/177 (66%)
 Frame = +2

Query: 5   DLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 184
           DL+P ++V GV  L ++  V+ S ED                           +S+ AQ 
Sbjct: 205 DLNPLRVVEGVREL-NKKLVIVSGED--------------------------RISKQAQY 237

Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
           NATLL  + +R++L SK V   H+L  +AF W+L EIE RF QA+A  GEMVGA AAQS+
Sbjct: 238 NATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSL 297

Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL ++L+G A  DAE
Sbjct: 298 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTIFLQGQAAKDAE 354

[55][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
           RepID=A9QMF6_PRIPA
          Length = 583

 Score =  171 bits (433), Expect = 3e-41
 Identities = 87/124 (70%), Positives = 102/124 (82%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + VR++L SK +  +HRL  +AF WLL EIE RFQQA+A  GEMVG
Sbjct: 201 ISKQAQYNATLLMNILVRSTLCSKQLAEKHRLNSEAFEWLLGEIETRFQQAIAQPGEMVG 260

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL+G A 
Sbjct: 261 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKQPKTPSLTVYLQGAAA 320

Query: 524 HDAE 535
            DAE
Sbjct: 321 KDAE 324

[56][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila simulans RepID=Q1WKU2_DROSI
          Length = 746

 Score =  171 bits (432), Expect = 4e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 136 TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 168

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 228

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286

[57][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4IK28_DROSE
          Length = 1887

 Score =  171 bits (432), Expect = 4e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 994  TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[58][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
           subgroup RepID=A9YGC1_DROME
          Length = 247

 Score =  171 bits (432), Expect = 4e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 51  TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 83

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 84  ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 143

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 144 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 201

[59][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
            RepID=A9UNH9_DROME
          Length = 1887

 Score =  171 bits (432), Expect = 4e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 994  TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[60][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
            melanogaster RepID=RPB1_DROME
          Length = 1887

 Score =  171 bits (432), Expect = 4e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 994  TDLSPIRVIKGVKTLLERCVIVTGND---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[61][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179348F
          Length = 1862

 Score =  170 bits (431), Expect = 5e-41
 Identities = 97/178 (54%), Positives = 120/178 (67%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DL+P K+V GV+ LL +  V+ + ED                          ELS+ A 
Sbjct: 995  TDLNPIKVVNGVKKLLDKC-VIVAGED--------------------------ELSKKAN 1027

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  VR++L +K+V    RL+ +AF WL+ EIENRF+QA A  GEMVGA AAQS
Sbjct: 1028 KNATLLFQCLVRSTLCTKLVSENFRLSSEAFEWLVGEIENRFKQAQAQPGEMVGALAAQS 1087

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1088 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1145

[62][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E658E
          Length = 1628

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 116/178 (65%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++V G   L  +  ++  D+                            LS+ AQ
Sbjct: 1000 TDLSPLRVVEGTHDLSKKLVIVNGDDP---------------------------LSKQAQ 1032

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L SK +  E RL+ +AF WLL EIE +F  ++A  GEMVGA AAQS
Sbjct: 1033 QNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNHSIAHPGEMVGALAAQS 1092

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SKR KTPSL V+L G A  DAE
Sbjct: 1093 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAE 1150

[63][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
            RepID=Q9XZU9_DROSU
          Length = 1889

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T  +                            +S+ A 
Sbjct: 994  TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[64][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
            pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
          Length = 1811

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T  +                            +S+ A 
Sbjct: 916  TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 948

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 949  ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1008

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1009 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1066

[65][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
            RepID=Q9XZS2_DROMD
          Length = 1889

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T  +                            +S+ A 
Sbjct: 994  TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[66][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
            RepID=Q9XZS1_DROGU
          Length = 1889

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T  +                            +S+ A 
Sbjct: 994  TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[67][TOP]
>UniRef100_Q9NJI9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tanystylum
           orbiculare RepID=Q9NJI9_9CHEL
          Length = 256

 Score =  170 bits (431), Expect = 5e-41
 Identities = 97/178 (54%), Positives = 116/178 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP +++ GVE L+ +  ++  D+                            LS  A 
Sbjct: 10  TDLSPLRVIHGVEDLVKKLVIVPGDD---------------------------RLSLQAN 42

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLFQ  +R++L SK V  E RL+ +AF WLL EI+ RFQQA    GEMVGA AAQS
Sbjct: 43  ENATLLFQALLRSTLCSKKVAEEFRLSTEAFDWLLGEIDTRFQQAQVMPGEMVGALAAQS 102

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A  DAE
Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLTGAAARDAE 160

[68][TOP]
>UniRef100_Q9BNQ3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Peripatus sp.
           Per2 RepID=Q9BNQ3_9BILA
          Length = 300

 Score =  170 bits (431), Expect = 5e-41
 Identities = 95/178 (53%), Positives = 115/178 (64%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           SDL+P +++ GV  L  R  ++  ++                            +S+ AQ
Sbjct: 10  SDLNPLRVIEGVRDLSKRLIIVPGED---------------------------RISKQAQ 42

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + VRA+L SK V  EH+L+ +AF WLL EIE RF QA    GEMVGA AAQS
Sbjct: 43  ENATLLMNILVRATLCSKRVTKEHKLSTEAFEWLLGEIETRFAQAQGQPGEMVGALAAQS 102

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A  DAE
Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGQAARDAE 160

[69][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
            pseudoobscura RepID=Q29IN2_DROPS
          Length = 1889

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T  +                            +S+ A 
Sbjct: 994  TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[70][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
            RepID=Q25203_9CAEN
          Length = 1343

 Score =  170 bits (431), Expect = 5e-41
 Identities = 96/178 (53%), Positives = 113/178 (63%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P  +V GV  L  R  ++  ++                            +S+ A 
Sbjct: 916  SDLDPINVVSGVRDLCQRLTIVEGED---------------------------MISKQAN 948

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLL +  +R++L +K V  EHRL+  AF WLL EIE RFQQA A  GEMVGA AAQS
Sbjct: 949  ENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHPGEMVGALAAQS 1008

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL G A  DAE
Sbjct: 1009 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLNGPAARDAE 1066

[71][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila erecta RepID=Q1WKU4_DROER
          Length = 760

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 136 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 168

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 228

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286

[72][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila orena RepID=Q1WKU3_DROOR
          Length = 750

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 136 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 168

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 228

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286

[73][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
           Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
          Length = 766

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 136 TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 168

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 169 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 228

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 229 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 286

[74][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4PY98_DROYA
          Length = 1889

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 994  TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[75][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4NDK9_DROWI
          Length = 1890

 Score =  170 bits (431), Expect = 5e-41
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV  LL R  ++T ++                            +S+ A 
Sbjct: 994  TDLSPMRVIKGVRGLLERCVIVTGND---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  VR++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[76][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
            RepID=B4H2R8_DROPE
          Length = 1804

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T  +                            +S+ A 
Sbjct: 994  TDLSPMRVIKGVKTLLERCVIVTGAD---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[77][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NUC1_DROER
          Length = 1889

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 994  TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[78][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MQ29_DROAN
          Length = 1889

 Score =  170 bits (431), Expect = 5e-41
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV+ LL R  ++T ++                            +S+ A 
Sbjct: 994  TDLSPMRVIKGVKGLLERCVIVTGND---------------------------RISKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1144

[79][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF13
          Length = 1932

 Score =  170 bits (430), Expect = 7e-41
 Identities = 96/178 (53%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  V+ + ED                           LS  AQ
Sbjct: 1002 SDLHPIKVVDGVKELSKKL-VIVNGEDP--------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[80][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF12
          Length = 1970

 Score =  170 bits (430), Expect = 7e-41
 Identities = 96/178 (53%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P K+V GV+ L  +  V+ + ED                           LS  AQ
Sbjct: 1002 SDLHPIKVVDGVKELSKKL-VIVNGEDP--------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[81][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
           RepID=A9QMH1_9BILA
          Length = 616

 Score =  170 bits (430), Expect = 7e-41
 Identities = 95/177 (53%), Positives = 116/177 (65%)
 Frame = +2

Query: 5   DLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 184
           DL+P +++ GV  L  +  ++ S ED                           +S+ AQ 
Sbjct: 212 DLNPVRVIEGVRELSKKL-IIVSGED--------------------------RISKQAQY 244

Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
           NATLL  + +R++L SK V   H+L  +AF W+L EIE RF QA+A  GEMVGA AAQS+
Sbjct: 245 NATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSL 304

Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL V+L+G A  DAE
Sbjct: 305 GEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTVFLQGQAAKDAE 361

[82][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           regenfussi RepID=A9QMG9_9BILA
          Length = 620

 Score =  170 bits (430), Expect = 7e-41
 Identities = 86/124 (69%), Positives = 102/124 (82%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + +R++L SK V  +HRL ++AF WL+ EIE RF QA+A  GEMVG
Sbjct: 230 ISKQAQFNATLLMNILLRSTLCSKQVAEKHRLNQEAFEWLIGEIETRFXQAIAQPGEMVG 289

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 290 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAAA 349

Query: 524 HDAE 535
            DAE
Sbjct: 350 RDAE 353

[83][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
            RepID=Q23699_CRAGI
          Length = 1340

 Score =  169 bits (429), Expect = 9e-41
 Identities = 97/178 (54%), Positives = 115/178 (64%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DL P K+V GVE L  R  V+   +                            LS  A 
Sbjct: 913  TDLHPIKVVEGVEDLCKRLIVVAGGD---------------------------RLSIQAN 945

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF+  +R++L +K V  E RL+ +AF WL+ E+E+RFQQA A  GEMVGA AAQS
Sbjct: 946  ANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQS 1005

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL VYL G A  DAE
Sbjct: 1006 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLIGQAARDAE 1063

[84][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
           RepID=A9QMG8_9BILA
          Length = 587

 Score =  169 bits (429), Expect = 9e-41
 Identities = 87/124 (70%), Positives = 102/124 (82%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + +R++L SK V  ++RL  +AF WLL EIE RFQQA+A  GEMVG
Sbjct: 222 ISKQAQYNATLLMNILLRSTLCSKQVAEKYRLNSEAFEWLLGEIETRFQQAIAQPGEMVG 281

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 282 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAAA 341

Query: 524 HDAE 535
            DAE
Sbjct: 342 RDAE 345

[85][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
          Length = 1422

 Score =  169 bits (428), Expect = 1e-40
 Identities = 94/178 (52%), Positives = 117/178 (65%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP K+++GV+ LL +  ++  D+                            LS+ A 
Sbjct: 994  TDLSPMKVIQGVKDLLDKCIIVAGDD---------------------------RLSKQAN 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  VR++L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS
Sbjct: 1027 ENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1087 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1144

[86][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
           halicti RepID=P90678_9BILA
          Length = 631

 Score =  169 bits (428), Expect = 1e-40
 Identities = 92/178 (51%), Positives = 117/178 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P ++++GV  +  +  ++  D+                            +S  AQ
Sbjct: 207 TDLNPVRVIQGVREVSKKLIIVGGDD---------------------------RISVQAQ 239

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + VR++L +K +  +H+L  +AF WLL EIE RFQQA+A  GEMVGA AAQS
Sbjct: 240 YNATLLMNILVRSTLCAKAMAEKHKLNAEAFEWLLGEIETRFQQAIAQPGEMVGALAAQS 299

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A  DAE
Sbjct: 300 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLEGAAAKDAE 357

[87][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
           EM434 RepID=A9QMQ7_9BILA
          Length = 398

 Score =  169 bits (428), Expect = 1e-40
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P +++ GV  L  +  ++ S ED                           +S+ AQ
Sbjct: 211 TDLNPLRVIEGVRELSKKL-IIVSGED--------------------------RISKQAQ 243

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK + + HRL  +AF WLL E+E RF+QA+A  GEMVGA AAQS
Sbjct: 244 YNATLLMNILIRSTLCSKKMATSHRLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 303

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A  DAE
Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDAE 361

[88][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
            RepID=O35559_CRIGR
          Length = 1970

 Score =  169 bits (427), Expect = 2e-40
 Identities = 93/178 (52%), Positives = 117/178 (65%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL   K+V GV+ L  +  ++  D+                            LS  AQ
Sbjct: 1002 SDLHSIKVVEGVKELSKKLVIVNGDDP---------------------------LSRQAQ 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS
Sbjct: 1035 ENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN+SK+ KTPSL V+L G +  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAE 1152

[89][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
            RepID=Q7Q3C6_ANOGA
          Length = 1878

 Score =  169 bits (427), Expect = 2e-40
 Identities = 95/178 (53%), Positives = 114/178 (64%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP K+++GV  LL R  ++   +                            LS+ A 
Sbjct: 992  TDLSPLKVIQGVRDLLQRCVIVAGTD---------------------------RLSKQAN 1024

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  VR++L +K V  E RL  +AF WL+ EIE RFQQA    GEMVGA AAQS
Sbjct: 1025 ENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQS 1084

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SKR K PSL V+L G A  DAE
Sbjct: 1085 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARDAE 1142

[90][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
           armata SB363 RepID=A9UEE2_9BILA
          Length = 475

 Score =  169 bits (427), Expect = 2e-40
 Identities = 94/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P +++ G+  L  +  V+ S ED                           +S+ AQ
Sbjct: 201 TDLNPLRVIEGIRELSTKL-VIVSGED--------------------------RISQQAQ 233

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK + S H+L  +AF WLL EIE RF+QA+A  GEMVGA AAQS
Sbjct: 234 YNATLLMNILIRSTLCSKKMASTHKLNSEAFEWLLGEIETRFKQAIAQPGEMVGALAAQS 293

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A  DAE
Sbjct: 294 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLNGAAAKDAE 351

[91][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
           inermiformis RepID=A9QMR5_9BILA
          Length = 524

 Score =  168 bits (426), Expect = 2e-40
 Identities = 86/124 (69%), Positives = 101/124 (81%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + VR++L SK +  ++RL  +AF WLL E+E RFQQA+A  GEMVG
Sbjct: 228 ISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVG 287

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A 
Sbjct: 288 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGAAA 347

Query: 524 HDAE 535
            DAE
Sbjct: 348 RDAE 351

[92][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
           RepID=A9QMF4_9BILA
          Length = 597

 Score =  168 bits (426), Expect = 2e-40
 Identities = 86/124 (69%), Positives = 101/124 (81%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + VR++L SK +  ++RL  +AF WLL E+E RFQQA+A  GEMVG
Sbjct: 196 ISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVG 255

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A 
Sbjct: 256 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLQGAAA 315

Query: 524 HDAE 535
            DAE
Sbjct: 316 RDAE 319

[93][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179338A
          Length = 1862

 Score =  168 bits (425), Expect = 3e-40
 Identities = 93/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DL+P K++ GV+ LL +  ++   +                           ELS+ A 
Sbjct: 995  TDLNPVKVINGVKELLDKCVIVAGGD---------------------------ELSKKAN 1027

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  VR++L +K+V    RL+ +AF WL+ EIENRF+QA A  GEMVGA AAQS
Sbjct: 1028 HNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQPGEMVGALAAQS 1087

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1088 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1145

[94][TOP]
>UniRef100_Q6JU33 RNA polymerase II largest subunit (Fragment) n=1 Tax=Limnadia
           lenticularis RepID=Q6JU33_9CRUS
          Length = 256

 Score =  168 bits (425), Expect = 3e-40
 Identities = 93/178 (52%), Positives = 118/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P ++++GV  LL +   +  ++                           +LS+ A 
Sbjct: 10  TDLNPVRVIQGVRDLLQKCIAVPGED---------------------------KLSKQAN 42

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLFQ  VRA+L +K V  E+RL+ +AF WL+ EIE RF QA AP GEMVGA AAQS
Sbjct: 43  ENATLLFQTLVRATLCTKRVAEEYRLSSEAFEWLIGEIETRFLQAQAPPGEMVGALAAQS 102

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 160

[95][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score =  167 bits (424), Expect = 3e-40
 Identities = 91/178 (51%), Positives = 117/178 (65%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL+P+ +V  +E L+ R +++ + +  E                   DE          
Sbjct: 989  SDLNPAVVVLEIEKLVARLKIIATADTTE------------------DDENFNRAWAEVY 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NAT+LF + VR++ ASK VL+E RLT KAF W+  EIE++F QALA  GEMVGA AAQS
Sbjct: 1031 FNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN++K+ KTPSL +YL+     D +
Sbjct: 1091 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVKTPSLTIYLKPHMARDMD 1148

[96][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
           RepID=A9QMH3_9BILA
          Length = 619

 Score =  167 bits (423), Expect = 4e-40
 Identities = 93/178 (52%), Positives = 120/178 (67%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P +++ GV  L  +  ++ S ED                          ++S+ AQ
Sbjct: 203 TDLNPLRVIEGVRELSKKL-IIVSGED--------------------------KISKQAQ 235

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + VR++L SK + S+++L  +AF WLL E+E RF+QA+A  GEMVGA AAQS
Sbjct: 236 YNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 295

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A  DAE
Sbjct: 296 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAAKDAE 353

[97][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QME1_9BILA
          Length = 628

 Score =  167 bits (423), Expect = 4e-40
 Identities = 93/178 (52%), Positives = 119/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P +++ GV  L  +  ++ S ED                           +S+ AQ
Sbjct: 204 TDLNPLRVIEGVRELSQKL-IIVSGED--------------------------RISKQAQ 236

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + VR++L SK + S+++L  +AF WLL E+E RF+QA+A  GEMVGA AAQS
Sbjct: 237 YNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 296

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A  DAE
Sbjct: 297 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAAKDAE 354

[98][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
            RepID=UPI0000D5670C
          Length = 2007

 Score =  167 bits (422), Expect = 6e-40
 Identities = 95/178 (53%), Positives = 118/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++++GV  LL++  V+ + ED                           LS+ A 
Sbjct: 998  TDLSPLRVIQGVRELLNKC-VIVAGED--------------------------RLSKQAN 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  VR++L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS
Sbjct: 1031 ENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVNPGEMVGALAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1091 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1148

[99][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
           RepID=Q6E227_CAEJA
          Length = 608

 Score =  167 bits (422), Expect = 6e-40
 Identities = 86/125 (68%), Positives = 101/125 (80%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE RFQQA+A  GEMV
Sbjct: 220 EISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 279

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLTGAA 339

Query: 521 VHDAE 535
             DAE
Sbjct: 340 ARDAE 344

[100][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
           RepID=A9QMG7_9BILA
          Length = 583

 Score =  167 bits (422), Expect = 6e-40
 Identities = 86/124 (69%), Positives = 100/124 (80%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + VR++L SK +  ++RL  +AF WLL EIE+RFQQA+   GEMVG
Sbjct: 221 ISKHAQYNATLLMNILVRSTLCSKQMADKYRLNEEAFEWLLGEIEHRFQQAIVQPGEMVG 280

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL VYL G A 
Sbjct: 281 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVYLTGGAA 340

Query: 524 HDAE 535
            DAE
Sbjct: 341 KDAE 344

[101][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QMG0_OSCTI
          Length = 629

 Score =  167 bits (422), Expect = 6e-40
 Identities = 84/124 (67%), Positives = 101/124 (81%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S  AQ NATLL  + +R++L SK + + H+L ++AF WLL EIE RF+ A+A  GEMVG
Sbjct: 238 ISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVG 297

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 298 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAA 357

Query: 524 HDAE 535
            DAE
Sbjct: 358 KDAE 361

[102][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
           RepID=A9QME6_9PELO
          Length = 526

 Score =  167 bits (422), Expect = 6e-40
 Identities = 85/124 (68%), Positives = 101/124 (81%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + +R++L SK + S ++L  +AF WLL E+E RFQQA+A  GEMVG
Sbjct: 135 ISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEWLLGEVETRFQQAIAQPGEMVG 194

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A 
Sbjct: 195 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLTGAAT 254

Query: 524 HDAE 535
            DA+
Sbjct: 255 KDAD 258

[103][TOP]
>UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QME4_OSCTI
          Length = 446

 Score =  167 bits (422), Expect = 6e-40
 Identities = 84/124 (67%), Positives = 101/124 (81%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S  AQ NATLL  + +R++L SK + + H+L ++AF WLL EIE RF+ A+A  GEMVG
Sbjct: 60  ISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVG 119

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 120 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAA 179

Query: 524 HDAE 535
            DAE
Sbjct: 180 KDAE 183

[104][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
          Length = 1943

 Score =  167 bits (422), Expect = 6e-40
 Identities = 92/178 (51%), Positives = 119/178 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DL+P +++ GV+ L  +  V+ S ED                           +S+ AQ
Sbjct: 1067 TDLNPLRVIEGVKELSKKL-VIVSGED--------------------------RISKQAQ 1099

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLL  + +R++L +K +  +HRL  + F WL+ EIE+RF+QA+   GEMVGA AAQS
Sbjct: 1100 YNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQS 1159

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A  DAE
Sbjct: 1160 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLQGTAAKDAE 1217

[105][TOP]
>UniRef100_Q6JU18 RNA polymerase II largest subunit (Fragment) n=1 Tax=Mesocyclops
           edax RepID=Q6JU18_9MAXI
          Length = 302

 Score =  166 bits (421), Expect = 8e-40
 Identities = 96/177 (54%), Positives = 116/177 (65%)
 Frame = +2

Query: 5   DLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 184
           DLSP K++ GV  LL +  V+   ED                          +LS+ A  
Sbjct: 11  DLSPLKVITGVRDLLEKC-VIVKGED--------------------------KLSKQANE 43

Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
           NAT LFQ  VR++L SK+V  + RL+ +AF WLL EIE++F QA A  GEMVGA AAQSI
Sbjct: 44  NATTLFQCLVRSTLCSKLVAEQFRLSEEAFEWLLGEIESKFMQAQATPGEMVGAIAAQSI 103

Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 104 GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 160

[106][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=O01364_9BILA
          Length = 633

 Score =  166 bits (421), Expect = 8e-40
 Identities = 93/178 (52%), Positives = 117/178 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P +++ GV  L  +  V+   ED                           +S+ AQ
Sbjct: 207 TDLNPLRVIEGVRELSKKL-VIVGGED--------------------------RISKQAQ 239

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK + S ++L ++AF WLL E+E RFQQ +A  GEMVGA AAQS
Sbjct: 240 YNATLLMNILLRSTLCSKQMASHYKLNQEAFDWLLGEVETRFQQPIAQPGEMVGALAAQS 299

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+LRG A  DA+
Sbjct: 300 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKMLKTPSLTVFLRGVAARDAD 357

[107][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase n=1 Tax=Vitis
            vinifera RepID=UPI0001985649
          Length = 1848

 Score =  166 bits (420), Expect = 1e-39
 Identities = 94/172 (54%), Positives = 115/172 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  V+ L  R +V+  D     D I+ E                      AQ
Sbjct: 998  SDMHPMEIVEAVDKLQERLKVVPGD-----DLISME----------------------AQ 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F + +R++ ASK VL E+RLTR+AF W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 1031 KNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ D
Sbjct: 1091 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPD 1142

[108][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7NVN7_VITVI
          Length = 1010

 Score =  166 bits (420), Expect = 1e-39
 Identities = 94/172 (54%), Positives = 115/172 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           SD+ P +IV  V+ L  R +V+  D     D I+ E                      AQ
Sbjct: 235 SDMHPMEIVEAVDKLQERLKVVPGD-----DLISME----------------------AQ 267

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATL F + +R++ ASK VL E+RLTR+AF W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 268 KNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 327

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517
           IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+ D
Sbjct: 328 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPD 379

[109][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q9NJN3_ARMVU
          Length = 433

 Score =  166 bits (420), Expect = 1e-39
 Identities = 92/178 (51%), Positives = 115/178 (64%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP K+V GV   L +  +++ ++                            +S  A 
Sbjct: 159 TDLSPIKVVEGVNETLRKCMIVSGED---------------------------RISVQAN 191

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLF   VR++L +K V  E+RLT +AF WL+ EIE RF QA+A  GEMVGA AAQS
Sbjct: 192 ENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQS 251

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 252 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLLGAAARDAE 309

[110][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q6JU60_ARMVU
          Length = 736

 Score =  166 bits (420), Expect = 1e-39
 Identities = 92/178 (51%), Positives = 115/178 (64%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP K+V GV   L +  +++ ++                            +S  A 
Sbjct: 462 TDLSPIKVVEGVNETLRKCMIVSGED---------------------------RISVQAN 494

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLF   VR++L +K V  E+RLT +AF WL+ EIE RF QA+A  GEMVGA AAQS
Sbjct: 495 ENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQS 554

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 555 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLLGAAARDAE 612

[111][TOP]
>UniRef100_Q9NJL5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Metajapyx
           subterraneus RepID=Q9NJL5_9HEXA
          Length = 256

 Score =  166 bits (419), Expect = 1e-39
 Identities = 91/178 (51%), Positives = 117/178 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP ++++GV+ LL +  ++  D+                            LS+ A 
Sbjct: 10  TDLSPLRVIQGVQELLRKCVIVAGDD---------------------------RLSKMAN 42

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLFQ  VR++L ++ V  E RL+ +AF WL+ E+E RFQQA    GEMVGA AAQS
Sbjct: 43  DNATLLFQCLVRSTLCTRRVAXEFRLSSEAFEWLIGEVETRFQQAQVXPGEMVGALAAQS 102

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAAXDAE 160

[112][TOP]
>UniRef100_Q9BN99 RNA polymerase II largest subunit (Fragment) n=1 Tax=Stenochrus
           portoricensis RepID=Q9BN99_9ARAC
          Length = 256

 Score =  166 bits (419), Expect = 1e-39
 Identities = 95/178 (53%), Positives = 115/178 (64%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP +++ GVE L+ +  ++  ++                            LS  A 
Sbjct: 10  TDLSPLRVMHGVEDLVKKLIIVPGED---------------------------RLSIQAN 42

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLF+  +R+ L +K V  E RL+ +AF WLL EIE RFQQA    GEMVGA AAQS
Sbjct: 43  DNATLLFRALLRSVLCTKRVAEEFRLSSEAFEWLLGEIETRFQQAQVQPGEMVGALAAQS 102

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SKR KTPSL V+L G A  DAE
Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKRPKTPSLTVFLTGAAARDAE 160

[113][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
            RepID=C3ZES3_BRAFL
          Length = 1934

 Score =  166 bits (419), Expect = 1e-39
 Identities = 92/178 (51%), Positives = 114/178 (64%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DL P K+V GV  L  +  ++  D+   + A                           Q
Sbjct: 998  TDLHPIKVVEGVRDLSRKLVIVKGDDPISIQA---------------------------Q 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NAT+LF   +R++L ++ VL E RL+ +AF WLL EIE+RF QA+   GEMVGA AAQS
Sbjct: 1031 ANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G   +DAE
Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQPANDAE 1148

[114][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QMP3_9BILA
          Length = 406

 Score =  166 bits (419), Expect = 1e-39
 Identities = 90/178 (50%), Positives = 118/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P +++ GV  L  +  +++ +                             +S+ AQ
Sbjct: 211 TDLNPLRVIEGVRELSQKLIIVSGEN---------------------------RISKQAQ 243

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + VR++L SK + S+++L  +AF WLL E+E RF+QA+A  GEMVGA AAQS
Sbjct: 244 YNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 303

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+G A  DAE
Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQGAAAKDAE 361

[115][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
           RepID=A9QMF2_9PELO
          Length = 629

 Score =  166 bits (419), Expect = 1e-39
 Identities = 84/124 (67%), Positives = 100/124 (80%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + +R++L SK +  +HRL   AF WLL EIE+RFQQA+   GEMVG
Sbjct: 234 ISKQAQYNATLLVNILIRSTLCSKQMSEKHRLNESAFDWLLGEIEHRFQQAIVQPGEMVG 293

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  +TPSL V+L+G A 
Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 353

Query: 524 HDAE 535
            DAE
Sbjct: 354 KDAE 357

[116][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
            RepID=UPI000186501C
          Length = 1956

 Score =  165 bits (418), Expect = 2e-39
 Identities = 92/178 (51%), Positives = 114/178 (64%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DL P K+V GV  L  +  ++  D+   + A                           Q
Sbjct: 998  TDLHPIKVVEGVRDLSKKLVIVKGDDPISIQA---------------------------Q 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NAT+LF   +R++L ++ VL E RL+ +AF WLL EIE+RF QA+   GEMVGA AAQS
Sbjct: 1031 ANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G   +DAE
Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQPANDAE 1148

[117][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
           RepID=Q6E233_CAERE
          Length = 611

 Score =  165 bits (418), Expect = 2e-39
 Identities = 84/125 (67%), Positives = 102/125 (81%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL E+E+RFQQA+A  GEMV
Sbjct: 220 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEMV 279

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 339

Query: 521 VHDAE 535
             DAE
Sbjct: 340 AKDAE 344

[118][TOP]
>UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp.
           RepID=O01370_9BILA
          Length = 633

 Score =  165 bits (418), Expect = 2e-39
 Identities = 91/178 (51%), Positives = 118/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           ++LSP +++ GV  L  +  +++ D+                            +S+ AQ
Sbjct: 207 TNLSPLRVIEGVRELSKKLIIVSGDD---------------------------RISQQAQ 239

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK +  ++RL ++ F WLL EIE+RFQQA+A  GEMVGA AAQS
Sbjct: 240 YNATLLMNILLRSTLCSKQMAEKYRLNQEGFEWLLGEIEHRFQQAIAQPGEMVGALAAQS 299

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G A  DAE
Sbjct: 300 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLTGAARKDAE 357

[119][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
            RepID=B7PJA3_IXOSC
          Length = 1937

 Score =  165 bits (418), Expect = 2e-39
 Identities = 94/178 (52%), Positives = 116/178 (65%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP ++V+GVE L+ +  ++  ++                            LS  A 
Sbjct: 1002 TDLSPLRVVQGVEELVKKLVIVPGED---------------------------HLSIQAN 1034

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF+  +RA+L SK V  E RL+ ++F WLL EIE RF Q+    GEMVGA AAQS
Sbjct: 1035 ENATLLFRSLLRATLCSKRVAEEFRLSTESFEWLLGEIETRFHQSQGQPGEMVGALAAQS 1094

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A  DAE
Sbjct: 1095 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGAAARDAE 1152

[120][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
           RepID=A9QMP5_9BILA
          Length = 474

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/124 (66%), Positives = 103/124 (83%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + +R++L SK + + ++L ++AF WLL E+E RF+QA+A  GEMVG
Sbjct: 227 ISKQAQYNATLLMNILLRSTLCSKKMATTYKLNQEAFEWLLGEVETRFKQAIAQPGEMVG 286

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 287 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAA 346

Query: 524 HDAE 535
            DAE
Sbjct: 347 KDAE 350

[121][TOP]
>UniRef100_Q9NJN1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Semibalanus
           balanoides RepID=Q9NJN1_SEMBA
          Length = 256

 Score =  165 bits (417), Expect = 2e-39
 Identities = 90/178 (50%), Positives = 116/178 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP K++ GV  LL R  V+  ++                            LS+TA 
Sbjct: 10  TDLSPLKVLEGVRTLLSRCVVVRGED---------------------------RLSKTAN 42

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NAT+LF   VR++L ++ V  E+RL+ +AF WL+ EI+ RF QA+   GEMVGA AAQS
Sbjct: 43  ANATILFSCLVRSTLCTRRVAEEYRLSSEAFEWLIGEIDTRFHQAMVNPGEMVGALAAQS 102

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G +  DAE
Sbjct: 103 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGASARDAE 160

[122][TOP]
>UniRef100_Q9BNA4 RNA polymerase II largest subunit (Fragment) n=1 Tax=solifugid
           'Sol' RepID=Q9BNA4_9ARAC
          Length = 256

 Score =  165 bits (417), Expect = 2e-39
 Identities = 93/178 (52%), Positives = 116/178 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP + ++GVE L+ +  ++  ++                            LS  A 
Sbjct: 10  TDLSPLRTIKGVEELVKKLIIVPGED---------------------------RLSIQAN 42

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLF+  +R++L +K V  E RL+ +AF WLL EIE +FQQA    GEMVGA AAQS
Sbjct: 43  DNATLLFRALLRSTLCAKRVSEEFRLSTEAFDWLLEEIETKFQQAQGQPGEMVGALAAQS 102

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN+SK+ KTPSL V+L G A  DAE
Sbjct: 103 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGAAARDAE 160

[123][TOP]
>UniRef100_A9UEE0 RNA polymerase 2 largest subunit (Fragment) n=1 Tax=Diploscapter
           sp. JU359 RepID=A9UEE0_9BILA
          Length = 284

 Score =  165 bits (417), Expect = 2e-39
 Identities = 94/178 (52%), Positives = 117/178 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP +++ GV  L  R  ++ S ED                           +S+ AQ
Sbjct: 3   TDLSPIRVIDGVREL-SRKLIIVSGED--------------------------RISKQAQ 35

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK +   ++L  +AF WLL E+E RF QA+A  GEMVGA AAQS
Sbjct: 36  YNATLLMXILLRSTLCSKKMGMAYKLDSEAFEWLLGEVEQRFNQAIAQPGEMVGALAAQS 95

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A  DAE
Sbjct: 96  LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKLKTPSLTVFLQGAAAKDAE 153

[124][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
           dolichuroides RepID=A9QMG1_9BILA
          Length = 629

 Score =  165 bits (417), Expect = 2e-39
 Identities = 90/176 (51%), Positives = 116/176 (65%)
 Frame = +2

Query: 8   LSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLN 187
           L+P  ++RGV  L  +  ++  D+                            +S+ AQ N
Sbjct: 216 LNPLNVIRGVRSLSEKLIIVGGDD---------------------------RISKQAQYN 248

Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367
           ATLL  + +R++L +K + + H+L ++AF WLL EIE RF+ A+A  GEMVGA AAQS+G
Sbjct: 249 ATLLMNILLRSTLCAKKMATTHKLNQEAFEWLLGEIETRFKAAIAQPGEMVGALAAQSLG 308

Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A  DAE
Sbjct: 309 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDAE 364

[125][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
            RepID=UPI000186D846
          Length = 1885

 Score =  164 bits (416), Expect = 3e-39
 Identities = 94/178 (52%), Positives = 116/178 (65%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP +++ GV  LL +  V+ + ED                           LS+ A 
Sbjct: 987  TDLSPLRVIEGVRDLLQKC-VIVAGED--------------------------HLSKQAN 1019

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  VR++L +K V  + RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS
Sbjct: 1020 ENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQS 1079

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A  DAE
Sbjct: 1080 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1137

[126][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
           RepID=Q6E228_9BILA
          Length = 621

 Score =  164 bits (416), Expect = 3e-39
 Identities = 91/178 (51%), Positives = 119/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P +++ G++ L  +  ++ S ED                           +S+ AQ
Sbjct: 211 TDLNPLRVIDGIKELSSKL-IIVSGED--------------------------RISQQAQ 243

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK + S ++L  ++F WL+ EIE RF+QA+A  GEMVGA AAQS
Sbjct: 244 YNATLLMNILIRSTLCSKKMASTYKLNAESFEWLIGEIETRFKQAIAQPGEMVGALAAQS 303

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL VYL G A  DAE
Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVYLIGAAAKDAE 361

[127][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5YGY9_SORBI
          Length = 1857

 Score =  164 bits (415), Expect = 4e-39
 Identities = 89/170 (52%), Positives = 113/170 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  V+ L  R +V+  D+   ++A                           Q
Sbjct: 997  SDMHPMEIVEAVDKLQERLKVVPGDDPMSIEA---------------------------Q 1029

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 1030 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1089

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+
Sbjct: 1090 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1139

[128][TOP]
>UniRef100_A9QMQ4 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
           RepID=A9QMQ4_9BILA
          Length = 380

 Score =  164 bits (415), Expect = 4e-39
 Identities = 83/120 (69%), Positives = 97/120 (80%)
 Frame = +2

Query: 176 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355
           AQ NATLL  + +R++L SK + + H+L  +AF WLL E+E RFQQA+A  GEMVGA AA
Sbjct: 1   AQYNATLLMNILIRSTLCSKKMATTHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAA 60

Query: 356 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           QS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL  +L+G A  DAE
Sbjct: 61  QSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTCFLQGAAAKDAE 120

[129][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
           RepID=Q6E231_CAEBE
          Length = 596

 Score =  164 bits (414), Expect = 5e-39
 Identities = 84/125 (67%), Positives = 100/125 (80%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE RFQQA+A  GEMV
Sbjct: 212 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 271

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 272 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGPA 331

Query: 521 VHDAE 535
             D E
Sbjct: 332 AKDPE 336

[130][TOP]
>UniRef100_A9QMT0 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
           RepID=A9QMT0_9BILA
          Length = 271

 Score =  164 bits (414), Expect = 5e-39
 Identities = 93/178 (52%), Positives = 115/178 (64%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP +++ GV  L  R  ++ S ED                           +S+ AQ
Sbjct: 3   TDLSPLRVIEGVREL-SRKLIIVSGED--------------------------RISKQAQ 35

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK +   ++L  +AF WLL E+E RF  A+A  GEMVGA AAQS
Sbjct: 36  YNATLLMNILLRSTLCSKKMGMSYKLDSEAFEWLLGEVEQRFNSAIAQPGEMVGALAAQS 95

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A  DAE
Sbjct: 96  LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLEGAAAKDAE 153

[131][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
            thaliana RepID=RPB1_ARATH
          Length = 1840

 Score =  164 bits (414), Expect = 5e-39
 Identities = 94/178 (52%), Positives = 115/178 (64%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  V+ L  R  V+  D+                            LS  AQ
Sbjct: 1000 SDMHPVEIVDAVDKLQERLLVVPGDD---------------------------ALSVEAQ 1032

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F + +R++LASK VL E++L+R+AF W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 1033 KNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1092

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KR KTPSL VYL  +A    E
Sbjct: 1093 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKE 1150

[132][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99368_SOYBN
          Length = 977

 Score =  163 bits (413), Expect = 6e-39
 Identities = 92/173 (53%), Positives = 117/173 (67%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           SD+ P +IV  ++ L  R +V+   EDA                          LS+ AQ
Sbjct: 190 SDMHPMEIVEAIDKLQERLKVVPG-EDA--------------------------LSQEAQ 222

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLF + +R++ ASK VL E+RL+R++F W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 223 KNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQS 282

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INV+K  KTPSL VYL+ DA
Sbjct: 283 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELINVAKSIKTPSLSVYLKPDA 335

[133][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=B9FZ51_ORYSJ
          Length = 1526

 Score =  163 bits (413), Expect = 6e-39
 Identities = 88/170 (51%), Positives = 113/170 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  ++ L  R +V+  D+   ++A                           Q
Sbjct: 669  SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEA---------------------------Q 701

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 702  KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 761

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+
Sbjct: 762  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 811

[134][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
            RepID=B8BAW1_ORYSI
          Length = 1449

 Score =  163 bits (413), Expect = 6e-39
 Identities = 88/170 (51%), Positives = 113/170 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  ++ L  R +V+  D+   ++A                           Q
Sbjct: 968  SDMHPMEIVEAIDKLQERLKVVPGDDAMSIEA---------------------------Q 1000

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 1001 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1060

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+
Sbjct: 1061 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1110

[135][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
            RepID=Q17085_ARTSA
          Length = 1341

 Score =  163 bits (413), Expect = 6e-39
 Identities = 95/178 (53%), Positives = 117/178 (65%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDLSP ++++GV  LL +  V+ + ED                          +LS+ A 
Sbjct: 914  SDLSPLRVIQGVRDLL-KNCVIVNGED--------------------------KLSKQAN 946

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ  VR++L +K +  E+RL  +AF WL+ EIE RFQ A A  GEMVGA AAQS
Sbjct: 947  ENATLLFQCLVRSTLCTKRLADEYRLNTEAFEWLIGEIETRFQLAQAVPGEMVGAIAAQS 1006

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIINVS+  K PSL V+L G A  DAE
Sbjct: 1007 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINVSRSPKAPSLTVFLTGTAARDAE 1064

[136][TOP]
>UniRef100_A9QMS1 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides regina
           RepID=A9QMS1_9BILA
          Length = 426

 Score =  163 bits (413), Expect = 6e-39
 Identities = 83/124 (66%), Positives = 98/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + +R++L SK +  +H+L  + F WLL EIE RFQ A+A  GEMVG
Sbjct: 30  ISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVG 89

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G A 
Sbjct: 90  ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLHGAAA 149

Query: 524 HDAE 535
            DAE
Sbjct: 150 KDAE 153

[137][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMP7_9BILA
          Length = 440

 Score =  163 bits (413), Expect = 6e-39
 Identities = 83/124 (66%), Positives = 99/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + VR++L SK +   ++L  +AF WLL E+E RFQQA+A  GEMVG
Sbjct: 193 ISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVG 252

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
             AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A 
Sbjct: 253 PLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLEGAAA 312

Query: 524 HDAE 535
            DAE
Sbjct: 313 KDAE 316

[138][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=A9QMG6_9BILA
          Length = 633

 Score =  163 bits (413), Expect = 6e-39
 Identities = 92/178 (51%), Positives = 115/178 (64%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP +++ G+  L  +  V+ S ED                           +S+ AQ
Sbjct: 211 TDLSPVRVIEGIRELSKKL-VIVSGED--------------------------RISKQAQ 243

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK V S H+L  +AF WLL EIE+RF+QA+A      GA AAQS
Sbjct: 244 YNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAXXXXXXGALAAQS 303

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL +YL G A  DAE
Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIYLTGAAARDAE 361

[139][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
           RepID=A9QMF9_9BILA
          Length = 618

 Score =  163 bits (413), Expect = 6e-39
 Identities = 90/178 (50%), Positives = 118/178 (66%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           + L+P K++ GV+ L  +  +++ D+                            +S+ AQ
Sbjct: 202 TSLNPLKVISGVQELSKKLIIVSGDDS---------------------------ISKQAQ 234

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK + S ++L  +AF WLL E+E RF+QA+A  GEMVGA AAQS
Sbjct: 235 YNATLLMNILLRSTLCSKRMASMYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQS 294

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A  DAE
Sbjct: 295 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLSVFLTGAAAKDAE 352

[140][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMF5_9BILA
          Length = 630

 Score =  163 bits (413), Expect = 6e-39
 Identities = 83/124 (66%), Positives = 99/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + VR++L SK +   ++L  +AF WLL E+E RFQQA+A  GEMVG
Sbjct: 230 ISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVG 289

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
             AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A 
Sbjct: 290 PLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLEGAAA 349

Query: 524 HDAE 535
            DAE
Sbjct: 350 KDAE 353

[141][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
           RepID=A9QMF3_9BILA
          Length = 626

 Score =  163 bits (413), Expect = 6e-39
 Identities = 83/124 (66%), Positives = 98/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + +R++L SK +  +H+L  + F WLL EIE RFQ A+A  GEMVG
Sbjct: 234 ISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVG 293

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G A 
Sbjct: 294 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLHGAAA 353

Query: 524 HDAE 535
            DAE
Sbjct: 354 KDAE 357

[142][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            elegans RepID=RPB1_CAEEL
          Length = 1852

 Score =  163 bits (413), Expect = 6e-39
 Identities = 84/125 (67%), Positives = 101/125 (80%)
 Frame = +2

Query: 161  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
            E+S+ AQ NATLL  + +R++L +K + ++ +L  +AF WLL EIE+RFQQA+A  GEMV
Sbjct: 1018 EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMV 1077

Query: 341  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
            GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G A
Sbjct: 1078 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAA 1137

Query: 521  VHDAE 535
              D E
Sbjct: 1138 AKDPE 1142

[143][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            briggsae RepID=RPB1_CAEBR
          Length = 1853

 Score =  163 bits (413), Expect = 6e-39
 Identities = 84/125 (67%), Positives = 100/125 (80%)
 Frame = +2

Query: 161  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
            E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE RFQQA+A  GEMV
Sbjct: 1022 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 1081

Query: 341  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
            GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 1082 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 1141

Query: 521  VHDAE 535
              D E
Sbjct: 1142 AKDPE 1146

[144][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score =  163 bits (412), Expect = 8e-39
 Identities = 88/170 (51%), Positives = 113/170 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  ++ L  R +V+  D+D  ++A                           Q
Sbjct: 999  SDMHPMEIVDAIDKLQERLKVVPGDDDISIEA---------------------------Q 1031

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 1032 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1091

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTPSL V+L+
Sbjct: 1092 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLK 1141

[145][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q5WMZ9_ORYSJ
          Length = 1741

 Score =  163 bits (412), Expect = 8e-39
 Identities = 88/170 (51%), Positives = 113/170 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  ++ L  R +V+  D+D  ++A                           Q
Sbjct: 946  SDMHPMEIVDAIDKLQERLKVVPGDDDISIEA---------------------------Q 978

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 979  KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1038

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTPSL V+L+
Sbjct: 1039 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLK 1088

[146][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q0DKN9_ORYSJ
          Length = 1834

 Score =  163 bits (412), Expect = 8e-39
 Identities = 88/170 (51%), Positives = 113/170 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  ++ L  R +V+  D+D  ++A                           Q
Sbjct: 999  SDMHPMEIVDAIDKLQERLKVVPGDDDISIEA---------------------------Q 1031

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F + +R++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 1032 KNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1091

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTPSL V+L+
Sbjct: 1092 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLK 1141

[147][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5Y387_SORBI
          Length = 1874

 Score =  163 bits (412), Expect = 8e-39
 Identities = 92/170 (54%), Positives = 113/170 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  ++ L  R +V+  D     DAI+ E                      AQ
Sbjct: 998  SDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE----------------------AQ 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F +H+RA+ ASK VL E+RLTR+AF W++ EI  RF Q+L    EM+G  AAQS
Sbjct: 1031 KNATLFFNIHLRATFASKRVLREYRLTREAFEWIIDEIVWRFSQSLVAPSEMIGCVAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+
Sbjct: 1091 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

[148][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9TK89_PHYPA
          Length = 1646

 Score =  163 bits (412), Expect = 8e-39
 Identities = 90/170 (52%), Positives = 113/170 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  V+ L  R RV+  D+                           ++S  AQ
Sbjct: 986  SDMHPMEIVEAVDKLQERLRVVPGDD---------------------------QISMEAQ 1018

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F   +R++LASK VL ++RLTR+AF W++ EIE RF  +L   GEM+G  AAQS
Sbjct: 1019 RNATLFFGCLLRSTLASKRVLKDYRLTREAFDWVIGEIETRFLMSLVAPGEMIGCVAAQS 1078

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+TKTPSL V+L+
Sbjct: 1079 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKTKTPSLTVFLK 1128

[149][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
           RepID=Q6E232_9PELO
          Length = 601

 Score =  163 bits (412), Expect = 8e-39
 Identities = 83/125 (66%), Positives = 101/125 (80%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           ++S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE+RF QA+A  GEMV
Sbjct: 220 DISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMV 279

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 339

Query: 521 VHDAE 535
             DAE
Sbjct: 340 AKDAE 344

[150][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           SB341 RepID=Q6E225_9PELO
          Length = 622

 Score =  163 bits (412), Expect = 8e-39
 Identities = 82/125 (65%), Positives = 102/125 (81%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           ++S+ AQ NATLL  + +R++L SK + +  +L  +AF WLL E+E+RF Q++A  GEMV
Sbjct: 237 DISKQAQYNATLLMNILLRSTLCSKKMATSAKLNTEAFDWLLGEVESRFMQSIAQPGEMV 296

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAA 356

Query: 521 VHDAE 535
             DAE
Sbjct: 357 AKDAE 361

[151][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
           nematode RepID=O01376_9BILA
          Length = 633

 Score =  163 bits (412), Expect = 8e-39
 Identities = 83/125 (66%), Positives = 101/125 (80%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           ++S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE+RF QA+A  GEMV
Sbjct: 233 DISKQAQYNATLLMNILLRSALCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMV 292

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 293 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 352

Query: 521 VHDAE 535
             DAE
Sbjct: 353 AKDAE 357

[152][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QMT2_9PELO
          Length = 488

 Score =  162 bits (411), Expect = 1e-38
 Identities = 87/176 (49%), Positives = 116/176 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P +++ GV  L  +  +++ D+                            +S+ AQ
Sbjct: 193 TDLNPLRVIEGVRELSEKLVIVSGDD---------------------------RISKQAQ 225

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK + S +RL  +AF W+L E+E RF+QA+A  GEMVGA AAQS
Sbjct: 226 YNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQS 285

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL  +L+G A  D
Sbjct: 286 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLQGAAAKD 341

[153][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QME0_9PELO
          Length = 633

 Score =  162 bits (411), Expect = 1e-38
 Identities = 87/176 (49%), Positives = 116/176 (65%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P +++ GV  L  +  +++ D+                            +S+ AQ
Sbjct: 207 TDLNPLRVIEGVRELSEKLVIVSGDD---------------------------RISKQAQ 239

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK + S +RL  +AF W+L E+E RF+QA+A  GEMVGA AAQS
Sbjct: 240 YNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQS 299

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL  +L+G A  D
Sbjct: 300 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLQGAAAKD 355

[154][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
           wirthi RepID=Q6GYH6_9BILA
          Length = 630

 Score =  162 bits (410), Expect = 1e-38
 Identities = 83/124 (66%), Positives = 99/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + +R++L SK + S ++L  +AF WLL EIENRFQ A+A  GEMVG
Sbjct: 240 ISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDWLLGEIENRFQSAIAQPGEMVG 299

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L+ D  
Sbjct: 300 ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLQEDVA 359

Query: 524 HDAE 535
            D +
Sbjct: 360 KDRD 363

[155][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
           RepID=Q6E223_9PELO
          Length = 606

 Score =  162 bits (410), Expect = 1e-38
 Identities = 82/125 (65%), Positives = 101/125 (80%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           ++S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL E+E+RF QA+A  GEMV
Sbjct: 220 DISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMV 279

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 280 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLIGAA 339

Query: 521 VHDAE 535
             DAE
Sbjct: 340 ARDAE 344

[156][TOP]
>UniRef100_Q1PQE9 CG1554 (Fragment) n=1 Tax=Drosophila miranda RepID=Q1PQE9_DROMI
          Length = 335

 Score =  162 bits (410), Expect = 1e-38
 Identities = 83/124 (66%), Positives = 99/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVG
Sbjct: 18  ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 77

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+SK+ K PSL V+L G A 
Sbjct: 78  ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA 137

Query: 524 HDAE 535
            DAE
Sbjct: 138 RDAE 141

[157][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
           RepID=A9QMF1_9PELO
          Length = 605

 Score =  162 bits (410), Expect = 1e-38
 Identities = 82/124 (66%), Positives = 100/124 (80%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + +R++L SK +  ++RL  + F WLL EIE+RF QA+A  GEMVG
Sbjct: 215 ISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVG 274

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  +TPSL V+L+G A 
Sbjct: 275 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 334

Query: 524 HDAE 535
            DAE
Sbjct: 335 KDAE 338

[158][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
            RepID=A7S8F9_NEMVE
          Length = 1929

 Score =  162 bits (409), Expect = 2e-38
 Identities = 93/178 (52%), Positives = 113/178 (63%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P +++ GV  L  +  V+ + ED                           +S+ AQ
Sbjct: 998  SDLHPLRVIEGVRELSKKL-VIVAGED--------------------------HISKQAQ 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF + +R++L +K V  E  L+ +AF WLL EIE RF  +    GEMVGA AAQS
Sbjct: 1031 FNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVKPGEMVGALAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A  DAE
Sbjct: 1091 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLIGQAARDAE 1148

[159][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           JU727 RepID=A9QMQ9_9PELO
          Length = 620

 Score =  161 bits (408), Expect = 2e-38
 Identities = 83/125 (66%), Positives = 99/125 (79%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE RFQ A+A  GEMV
Sbjct: 237 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQSAIAQPGEMV 296

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G A
Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAA 356

Query: 521 VHDAE 535
             D E
Sbjct: 357 AKDPE 361

[160][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
           varius RepID=A8BDP1_PARVA
          Length = 467

 Score =  161 bits (408), Expect = 2e-38
 Identities = 90/178 (50%), Positives = 115/178 (64%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           SDL P K+VRGV+ L  +  V+                           + +  +S+ AQ
Sbjct: 142 SDLHPLKVVRGVQELSEKLIVV---------------------------KGVDRISQRAQ 174

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
           L+AT L    +R++L ++ V  E +L+  AF W+L EIE+RF+ +L   GEMVG  +AQS
Sbjct: 175 LDATFLMNALIRSTLCTRRVAEEFKLSSDAFDWVLGEIESRFRSSLVDPGEMVGPLSAQS 234

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPSL V+L+G A  DAE
Sbjct: 235 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTVFLKGAAARDAE 292

[161][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SXC0_RICCO
          Length = 1855

 Score =  160 bits (406), Expect = 4e-38
 Identities = 88/169 (52%), Positives = 112/169 (66%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P + V  V+ L  R +V+  D+   V+A                           Q
Sbjct: 998  SDIHPMEAVEAVDKLQERLKVVPGDDPLSVEA---------------------------Q 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F + +R++LASK VL ++RLTR+AF W++ EIE+RF Q+L   GEM+G  AAQS
Sbjct: 1031 KNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL ++L
Sbjct: 1091 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFL 1139

[162][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score =  160 bits (406), Expect = 4e-38
 Identities = 89/170 (52%), Positives = 112/170 (65%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SD+ P +IV  VE L  R RV+  ++                           ++S  AQ
Sbjct: 1001 SDMHPMEIVEAVENLQERLRVVPGND---------------------------QISMEAQ 1033

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATL F   +R++LASK VL ++RLTR+AF W++ E+E RF  +L   GEM+G  AAQS
Sbjct: 1034 RNATLFFGCLLRSTLASKRVLKDYRLTREAFEWVIGEVETRFLMSLVAPGEMIGCVAAQS 1093

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+ KTPSL VYL+
Sbjct: 1094 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLTVYLK 1143

[163][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
           mediterranea RepID=A9QME7_9PELO
          Length = 618

 Score =  160 bits (406), Expect = 4e-38
 Identities = 88/178 (49%), Positives = 114/178 (64%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP +++ GV  +  +  ++  ++                            +S+ AQ
Sbjct: 208 TDLSPLRVIEGVRDMSEKLIIVAGED---------------------------RISKQAQ 240

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK +   ++L  +AF WLL E+E RF+QA+A  GEMVG  AAQS
Sbjct: 241 YNATLLMNILLRSTLCSKKMAVSYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGPLAAQS 300

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G A  DAE
Sbjct: 301 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLLGAAAKDAE 358

[164][TOP]
>UniRef100_A9QMS3 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
           RepID=A9QMS3_9PELO
          Length = 363

 Score =  160 bits (405), Expect = 5e-38
 Identities = 81/124 (65%), Positives = 99/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NATLL  + +R++L SK +  ++RL  + F WLL EIE+RF QA+A  GEMVG
Sbjct: 9   ISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVG 68

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A A QS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  +TPSL V+L+G A 
Sbjct: 69  ALAXQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAA 128

Query: 524 HDAE 535
            DAE
Sbjct: 129 KDAE 132

[165][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
            RepID=Q010D7_OSTTA
          Length = 1673

 Score =  160 bits (404), Expect = 7e-38
 Identities = 80/122 (65%), Positives = 98/122 (80%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            LS  AQ N TLLF  HVRA+LA+K VL +H+LTR  F W++ E+E+RF+ ALAP G+ +G
Sbjct: 1022 LSIEAQRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDWVIGEVESRFKMALAPPGDGIG 1081

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
              AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K+ KTPSL V L+ +  
Sbjct: 1082 VVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKQIKTPSLTVALKPEFA 1141

Query: 524  HD 529
             D
Sbjct: 1142 SD 1143

[166][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
            RepID=A4S3M0_OSTLU
          Length = 1646

 Score =  160 bits (404), Expect = 7e-38
 Identities = 80/122 (65%), Positives = 97/122 (79%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            LS  AQ N T+LF  HVRA+LA+K VL EH+LTR  F W++ EIE+RF+ ALAP G+ +G
Sbjct: 1002 LSVEAQRNGTMLFFAHVRANLAAKRVLKEHKLTRAGFDWVIGEIESRFKMALAPPGDGIG 1061

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
              AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K  KTPSL + L+ +  
Sbjct: 1062 TVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKSIKTPSLTIALKPELA 1121

Query: 524  HD 529
             D
Sbjct: 1122 GD 1123

[167][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           plicata RepID=Q6E226_9PELO
          Length = 636

 Score =  159 bits (403), Expect = 9e-38
 Identities = 81/125 (64%), Positives = 98/125 (78%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           ++S  AQ NATLL  + +R++L SK + +  +L  +AF WLL E+E+RF QA+A  GEMV
Sbjct: 237 DISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDWLLGEVESRFNQAIAQPGEMV 296

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           GA AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL  +L G A
Sbjct: 297 GALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTCFLVGSA 356

Query: 521 VHDAE 535
             D E
Sbjct: 357 AKDVE 361

[168][TOP]
>UniRef100_B4YVW5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           mayaguensis RepID=B4YVW5_MELMY
          Length = 219

 Score =  159 bits (403), Expect = 9e-38
 Identities = 82/124 (66%), Positives = 98/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+A  GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIAQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[169][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
           RepID=A9QMF8_9BILA
          Length = 621

 Score =  159 bits (403), Expect = 9e-38
 Identities = 89/178 (50%), Positives = 115/178 (64%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL+P +++ GV  L  +  ++ S ED                           +S+ AQ
Sbjct: 211 TDLNPIRVIEGVRELSSKL-IIVSGED--------------------------RISKQAQ 243

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK + S ++L  +AF WLL E+E RF+QA+A      GA AAQS
Sbjct: 244 YNATLLMNILIRSTLCSKKMASTYKLNSEAFEWLLGEVETRFKQAIAXXXXXXGALAAQS 303

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A  DAE
Sbjct: 304 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGSAAKDAE 361

[170][TOP]
>UniRef100_A9QME2 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditis blumi
           RepID=A9QME2_9BILA
          Length = 151

 Score =  159 bits (402), Expect = 1e-37
 Identities = 80/116 (68%), Positives = 96/116 (82%)
 Frame = +2

Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367
           ATLL  + +R++L S+ +  +H+L  +AF WLL E+E RF+QA+A  GEMVGA AAQS+G
Sbjct: 1   ATLLMNILLRSTLCSRKMAFQHKLNAEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLG 60

Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSLVV+L G A  DAE
Sbjct: 61  EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLVVFLTGPAAKDAE 116

[171][TOP]
>UniRef100_A8BDP3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Priapulus
           caudatus RepID=A8BDP3_PRICU
          Length = 434

 Score =  159 bits (402), Expect = 1e-37
 Identities = 83/129 (64%), Positives = 98/129 (75%)
 Frame = +2

Query: 149 EALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPA 328
           E    LS+ AQ NATL     +R++L +K V  E++LT ++F WLL E+E+RFQ A A  
Sbjct: 164 EGEDRLSKQAQENATLNINAMLRSTLCTKRVAEEYKLTTESFEWLLGEVESRFQHAQAQP 223

Query: 329 GEMVGATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
           GEMVG  AAQS+GEPATQMTLNTFHYAGVSAKNVTLG PRL+EIINVSK+ KTPSL V+L
Sbjct: 224 GEMVGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGXPRLKEIINVSKKPKTPSLTVFL 283

Query: 509 RGDAVHDAE 535
            G A  DAE
Sbjct: 284 TGQAARDAE 292

[172][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48673
          Length = 1880

 Score =  159 bits (401), Expect = 2e-37
 Identities = 81/124 (65%), Positives = 98/124 (79%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            +S  AQ NAT L    +R++L+S  V  EH+L+ ++F WLL EIE RF Q+LA AGEMVG
Sbjct: 1023 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1082

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
            A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL  +L G A 
Sbjct: 1083 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1142

Query: 524  HDAE 535
             DAE
Sbjct: 1143 RDAE 1146

[173][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48672
          Length = 1913

 Score =  159 bits (401), Expect = 2e-37
 Identities = 81/124 (65%), Positives = 98/124 (79%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            +S  AQ NAT L    +R++L+S  V  EH+L+ ++F WLL EIE RF Q+LA AGEMVG
Sbjct: 1029 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1088

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
            A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL  +L G A 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1148

Query: 524  HDAE 535
             DAE
Sbjct: 1149 RDAE 1152

[174][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48671
          Length = 1921

 Score =  159 bits (401), Expect = 2e-37
 Identities = 81/124 (65%), Positives = 98/124 (79%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            +S  AQ NAT L    +R++L+S  V  EH+L+ ++F WLL EIE RF Q+LA AGEMVG
Sbjct: 1029 ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVG 1088

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
            A AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+SK+ +TPSL  +L G A 
Sbjct: 1089 ALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPRTPSLTCFLLGKAA 1148

Query: 524  HDAE 535
             DAE
Sbjct: 1149 RDAE 1152

[175][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           drosophilae RepID=Q6E224_9PELO
          Length = 633

 Score =  159 bits (401), Expect = 2e-37
 Identities = 80/125 (64%), Positives = 100/125 (80%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           ++S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL E+E+RF QA+A  GEMV
Sbjct: 236 DISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMV 295

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           GA AAQS+GEPA QMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL V+L G A
Sbjct: 296 GALAAQSLGEPAPQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKQLKTPSLTVFLIGAA 355

Query: 521 VHDAE 535
             DAE
Sbjct: 356 ARDAE 360

[176][TOP]
>UniRef100_C4QEL8 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
            RepID=C4QEL8_SCHMA
          Length = 1785

 Score =  159 bits (401), Expect = 2e-37
 Identities = 82/124 (66%), Positives = 97/124 (78%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            LS+ A  NATLL    +RASL +K V+ ++RL+ +A  W+L E+  RFQQA    GEMVG
Sbjct: 919  LSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVRARFQQAHIHPGEMVG 978

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSKR KTPS+ ++L G A 
Sbjct: 979  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSMTIFLTGQAA 1038

Query: 524  HDAE 535
             DAE
Sbjct: 1039 RDAE 1042

[177][TOP]
>UniRef100_B4YVX3 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVX3_MELHA
          Length = 219

 Score =  159 bits (401), Expect = 2e-37
 Identities = 82/124 (66%), Positives = 97/124 (78%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           LS+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   LSKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[178][TOP]
>UniRef100_B4YVX2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVX2_MELHA
          Length = 219

 Score =  158 bits (399), Expect = 3e-37
 Identities = 81/124 (65%), Positives = 97/124 (78%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[179][TOP]
>UniRef100_B4YVW9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVW9_MELHA
          Length = 219

 Score =  158 bits (399), Expect = 3e-37
 Identities = 81/124 (65%), Positives = 97/124 (78%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[180][TOP]
>UniRef100_B4YVW7 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVW7_MELHA
          Length = 219

 Score =  158 bits (399), Expect = 3e-37
 Identities = 81/124 (65%), Positives = 97/124 (78%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[181][TOP]
>UniRef100_B4YVW2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           mayaguensis RepID=B4YVW2_MELMY
          Length = 219

 Score =  158 bits (399), Expect = 3e-37
 Identities = 81/124 (65%), Positives = 97/124 (78%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[182][TOP]
>UniRef100_B4YVU6 RNA polymerase II large subunit (Fragment) n=2 Tax=Meloidogyne
           incognita group RepID=B4YVU6_MELAR
          Length = 219

 Score =  158 bits (399), Expect = 3e-37
 Identities = 81/124 (65%), Positives = 97/124 (78%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[183][TOP]
>UniRef100_B4YVU3 RNA polymerase II large subunit (Fragment) n=5 Tax=Meloidogyne
           RepID=B4YVU3_MELAR
          Length = 219

 Score =  158 bits (399), Expect = 3e-37
 Identities = 81/124 (65%), Positives = 97/124 (78%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[184][TOP]
>UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7R1R2_VITVI
          Length = 429

 Score =  157 bits (398), Expect = 3e-37
 Identities = 80/116 (68%), Positives = 98/116 (84%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S  AQ NATLLF + +R++ +SK VL+E+RL+R+AF W++ EIE+RF Q+L   GEM+G
Sbjct: 282 ISMEAQKNATLLFNILLRSTFSSKRVLNEYRLSREAFDWVIGEIESRFLQSLVSPGEMIG 341

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
             AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTPSL VYL+
Sbjct: 342 CIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKIIKTPSLSVYLK 397

[185][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
            RepID=Q9BMP3_MONBE
          Length = 1743

 Score =  157 bits (398), Expect = 3e-37
 Identities = 87/176 (49%), Positives = 110/176 (62%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP+ + + +     R  V+  D+                            LS+ AQ
Sbjct: 920  TDLSPAHVAQAIRTFTDRLVVIPGDDP---------------------------LSKVAQ 952

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF  ++R+ L+S+  +  HRL  KAF W+L E+E RF QA A  GEMVGA AAQS
Sbjct: 953  RNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQS 1012

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
            +GEPATQMTLNTFH AGVSAKNVTLGVPRL+EIINVSK+ KTPS+V+++  D   D
Sbjct: 1013 LGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPSMVLFIGEDKYQD 1068

[186][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
           RepID=A9V5W6_MONBE
          Length = 1307

 Score =  157 bits (398), Expect = 3e-37
 Identities = 87/176 (49%), Positives = 110/176 (62%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DLSP+ + + +     R  V+  D+                            LS+ AQ
Sbjct: 484 TDLSPAHVAQAIRTFTDRLVVIPGDDP---------------------------LSKVAQ 516

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLLF  ++R+ L+S+  +  HRL  KAF W+L E+E RF QA A  GEMVGA AAQS
Sbjct: 517 RNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQS 576

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
           +GEPATQMTLNTFH AGVSAKNVTLGVPRL+EIINVSK+ KTPS+V+++  D   D
Sbjct: 577 LGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPSMVLFIGEDKYQD 632

[187][TOP]
>UniRef100_A9QME5 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
           RepID=A9QME5_9BILA
          Length = 371

 Score =  157 bits (398), Expect = 3e-37
 Identities = 80/116 (68%), Positives = 96/116 (82%)
 Frame = +2

Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367
           ATLL  + +R++L +K + S H+L ++AF WLL EIE RF+ A+A  GEMVGA AAQS+G
Sbjct: 1   ATLLMNILLRSTLCAKKMASTHKLNQEAFEWLLGEIETRFKAAVAQPGEMVGALAAQSLG 60

Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A  DAE
Sbjct: 61  EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLQGAAAKDAE 116

[188][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
           elegans RepID=Q6JTX1_9BILA
          Length = 304

 Score =  157 bits (397), Expect = 5e-37
 Identities = 89/178 (50%), Positives = 112/178 (62%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           +DL P ++V G+  L+ +  V+   ED                           LS  AQ
Sbjct: 133 TDLHPVRVVEGLNELMKKL-VIVKGED--------------------------RLSREAQ 165

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NAT+L    +R++L SK +  E+ L  +AF WLL EIE+RF Q++   GEMVGA AAQS
Sbjct: 166 ENATILMNTMLRSTLCSKRMAEEYHLNTEAFEWLLGEIESRFAQSMVQPGEMVGALAAQS 225

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INVSK  +TPSL V+L G A  DAE
Sbjct: 226 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVSKNPRTPSLAVFLLGSAARDAE 283

[189][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
            RepID=Q25151_9ANNE
          Length = 1337

 Score =  157 bits (396), Expect = 6e-37
 Identities = 82/124 (66%), Positives = 96/124 (77%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            LS+TA  NATLL  + VR++L SK V+ E  L+ +AF WL+ EIE++F QA    GEMVG
Sbjct: 936  LSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEWLMGEIESKFIQARVQPGEMVG 995

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
            A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ + PSL V L G   
Sbjct: 996  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRAPSLTVILIGQPA 1055

Query: 524  HDAE 535
             DAE
Sbjct: 1056 RDAE 1059

[190][TOP]
>UniRef100_B4YVX9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           fallax RepID=B4YVX9_9BILA
          Length = 219

 Score =  157 bits (396), Expect = 6e-37
 Identities = 79/124 (63%), Positives = 98/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R++L S  +  +H+L  +AF WLL E+E RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[191][TOP]
>UniRef100_B4YVX6 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           fallax RepID=B4YVX6_9BILA
          Length = 219

 Score =  157 bits (396), Expect = 6e-37
 Identities = 79/124 (63%), Positives = 98/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R++L S  +  +H+L  +AF WLL E+E RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[192][TOP]
>UniRef100_B4YVX4 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           chitwoodi RepID=B4YVX4_MELCH
          Length = 219

 Score =  157 bits (396), Expect = 6e-37
 Identities = 79/124 (63%), Positives = 98/124 (79%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R++L S  +  +H+L  +AF WLL E+E RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[193][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score =  157 bits (396), Expect = 6e-37
 Identities = 84/169 (49%), Positives = 115/169 (68%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DLSP++++ G+  +L R  V+  D     D I+RE                      AQ
Sbjct: 991  TDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE----------------------AQ 1023

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            +NATLLF++H+R+ L SK+V+ +H + ++A+ W+L EIE +F +++A  GEM G  AAQS
Sbjct: 1024 MNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGEMCGTLAAQS 1083

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
            IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN ++  KTPS+ VYL
Sbjct: 1084 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYL 1132

[194][TOP]
>UniRef100_B4YVX0 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVX0_MELHA
          Length = 219

 Score =  156 bits (395), Expect = 8e-37
 Identities = 80/124 (64%), Positives = 96/124 (77%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL  +L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTAFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[195][TOP]
>UniRef100_B4YVU7 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           javanica RepID=B4YVU7_MELJA
          Length = 219

 Score =  156 bits (395), Expect = 8e-37
 Identities = 80/124 (64%), Positives = 96/124 (77%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+  Q NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQTQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[196][TOP]
>UniRef100_B4YVU9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           javanica RepID=B4YVU9_MELJA
          Length = 219

 Score =  156 bits (394), Expect = 1e-36
 Identities = 80/124 (64%), Positives = 96/124 (77%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L    +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCPLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[197][TOP]
>UniRef100_B4YVW8 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           hapla RepID=B4YVW8_MELHA
          Length = 219

 Score =  155 bits (393), Expect = 1e-36
 Identities = 80/124 (64%), Positives = 96/124 (77%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYA VSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYASVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[198][TOP]
>UniRef100_B4YVV9 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           incognita RepID=B4YVV9_MELIC
          Length = 219

 Score =  155 bits (393), Expect = 1e-36
 Identities = 80/124 (64%), Positives = 96/124 (77%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE R   A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRLCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[199][TOP]
>UniRef100_B4YVV3 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           javanica RepID=B4YVV3_MELJA
          Length = 219

 Score =  155 bits (393), Expect = 1e-36
 Identities = 80/124 (64%), Positives = 96/124 (77%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  +H+L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPR +EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRRKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[200][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
           redivivus RepID=A9QMH0_PANRE
          Length = 636

 Score =  155 bits (393), Expect = 1e-36
 Identities = 78/125 (62%), Positives = 98/125 (78%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           ++S  AQ NATLL  + +R++ A+K V   ++LT +AF W++ EIE+RF QA+   GEMV
Sbjct: 238 KISRQAQENATLLMNILLRSTFATKQVAEVYKLTNEAFEWIIGEIESRFNQAIVQPGEMV 297

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           G  AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L G+A
Sbjct: 298 GPLAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLTGEA 357

Query: 521 VHDAE 535
               E
Sbjct: 358 TRKPE 362

[201][TOP]
>UniRef100_B4YVX5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           chitwoodi RepID=B4YVX5_MELCH
          Length = 219

 Score =  155 bits (392), Expect = 2e-36
 Identities = 78/124 (62%), Positives = 97/124 (78%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           + + AQ NAT+L  + +R++L S  +  +H+L  +AF WLL E+E RF  A+   GEMVG
Sbjct: 2   IGKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[202][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
            RepID=B0DB45_LACBS
          Length = 1742

 Score =  155 bits (392), Expect = 2e-36
 Identities = 88/169 (52%), Positives = 107/169 (63%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P  IV GV  L  R  V+  D+                            LS  AQ
Sbjct: 986  SDLEPGYIVDGVNELCGRLVVVRGDDP---------------------------LSREAQ 1018

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            LNATL F++H+RA+ AS+ VL +  LTR+AF W++ E+E +F Q++   GEM G  AAQS
Sbjct: 1019 LNATLTFRMHLRATFASRRVLEKFHLTREAFDWVMGEVETKFNQSVVHPGEMCGTLAAQS 1078

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
            IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+   KTPSL V+L
Sbjct: 1079 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVHL 1127

[203][TOP]
>UniRef100_B4YVX8 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           chitwoodi RepID=B4YVX8_MELCH
          Length = 219

 Score =  155 bits (391), Expect = 2e-36
 Identities = 78/123 (63%), Positives = 97/123 (78%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R++L S  +  +H+L  +AF WLL E+E RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ +TPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRTPSLTVFLKGLAA 121

Query: 524 HDA 532
            DA
Sbjct: 122 KDA 124

[204][TOP]
>UniRef100_B4YVU5 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           arenaria RepID=B4YVU5_MELAR
          Length = 219

 Score =  155 bits (391), Expect = 2e-36
 Identities = 80/124 (64%), Positives = 96/124 (77%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ NAT+L  + +R+ L S  +  + +L  +AF WLL EIE RF  A+   GEMVG
Sbjct: 2   ISKQAQENATILMNILLRSMLCSLKMAKQRKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[205][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8Q5I6_MALGO
          Length = 1607

 Score =  155 bits (391), Expect = 2e-36
 Identities = 85/169 (50%), Positives = 111/169 (65%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDLSP +IV G++ +L+   V+  D+                           ++S   Q
Sbjct: 784  SDLSPFEIVDGLKRVLNNLLVVRGDD---------------------------KISRVMQ 816

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF++H+R+ L SK V+  H LTR+A+ W+L EIE +F +++A  GEM G  AAQS
Sbjct: 817  ENATLLFKIHLRSFLCSKQVIEVHHLTREAWEWVLGEIEGQFARSVAQPGEMCGTLAAQS 876

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
            IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN ++  KTPS+ VYL
Sbjct: 877  IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYL 925

[206][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
           RepID=A9QMR7_9BILA
          Length = 614

 Score =  154 bits (390), Expect = 3e-36
 Identities = 90/176 (51%), Positives = 110/176 (62%)
 Frame = +2

Query: 8   LSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLN 187
           LSP +++ GV  L  R  V+ S ED                           +S+ AQ N
Sbjct: 199 LSPLRVIEGVRELTARL-VIVSGED--------------------------HISQHAQEN 231

Query: 188 ATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 367
           ATLL ++ +R++L S+ +  +HRL  +AF WLL E+  RFQQA         A AAQS+G
Sbjct: 232 ATLLIKILLRSTLCSRKMAEQHRLNAEAFEWLLGEVXTRFQQAXXXXXXXXXALAAQSLG 291

Query: 368 EPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           EPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+LRG A  DAE
Sbjct: 292 EPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVFLRGAAAKDAE 347

[207][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6JYP8_SCHJY
          Length = 1748

 Score =  154 bits (390), Expect = 3e-36
 Identities = 88/169 (52%), Positives = 107/169 (63%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DL PS I+ GV  L+ +  V   D                       D   KE+ E   
Sbjct: 982  TDLLPSDIIYGVRNLISKLSVFRGD-----------------------DRITKEIQE--- 1015

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ+ +R+ LA+K V+ E+ L + AF W++ EIE RFQQ     GEMVG  AAQS
Sbjct: 1016 -NATLLFQILLRSKLATKRVVMEYHLNKIAFEWIIGEIEARFQQCQVNPGEMVGTLAAQS 1074

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
            IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTPSL +YL
Sbjct: 1075 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYL 1123

[208][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
            RepID=A8N128_COPC7
          Length = 1642

 Score =  154 bits (390), Expect = 3e-36
 Identities = 76/116 (65%), Positives = 97/116 (83%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            LS+ AQ N+TLLF++H+RA+ A++ V+ + RLTR+AF W+L EIE +F Q++A  GEM G
Sbjct: 960  LSKEAQDNSTLLFRMHLRATFAARKVIEQMRLTREAFEWILGEIETKFNQSIAHPGEMCG 1019

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+   KTPSL ++L+
Sbjct: 1020 TLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTIHLQ 1075

[209][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151A8B3
          Length = 1018

 Score =  154 bits (389), Expect = 4e-36
 Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 5/177 (2%)
 Frame = +2

Query: 20  KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
           +I++  + L H  R   SD   E     V  + +++L   G +          L + +Q 
Sbjct: 229 RIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSP---------LVKESQE 279

Query: 185 NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
           NATLLFQ  VR+ LA++ V+ E RL R +F W + EIE +FQ++L   GEMVG  AAQSI
Sbjct: 280 NATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSI 339

Query: 365 GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  D   D E
Sbjct: 340 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKDIAADIE 396

[210][TOP]
>UniRef100_B4YVV2 RNA polymerase II large subunit (Fragment) n=1 Tax=Meloidogyne
           javanica RepID=B4YVV2_MELJA
          Length = 219

 Score =  154 bits (389), Expect = 4e-36
 Identities = 80/124 (64%), Positives = 94/124 (75%)
 Frame = +2

Query: 164 LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
           +S+ AQ N T+L    +R+ L S  +  +H+L  +AF WLL EIE RF  A    GEMVG
Sbjct: 2   ISKQAQENTTILMNTLLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTATVQPGEMVG 61

Query: 344 ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
           A AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A 
Sbjct: 62  ALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLKGLAA 121

Query: 524 HDAE 535
            DAE
Sbjct: 122 KDAE 125

[211][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
            Tax=Pichia guilliermondii RepID=RPB1_PICGU
          Length = 1579

 Score =  154 bits (389), Expect = 4e-36
 Identities = 89/177 (50%), Positives = 114/177 (64%), Gaps = 5/177 (2%)
 Frame = +2

Query: 20   KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
            +I++  + L H  R   SD   E     V  + +++L   G +          L + +Q 
Sbjct: 795  RIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSP---------LVKESQE 845

Query: 185  NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
            NATLLFQ  VR+ LA++ V+ E RL R +F W + EIE +FQ++L   GEMVG  AAQSI
Sbjct: 846  NATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSI 905

Query: 365  GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  D   D E
Sbjct: 906  GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKDIAADIE 962

[212][TOP]
>UniRef100_A9QMH2 RNA polymerase 2 (Fragment) n=1 Tax=Brevibucca saprophaga
           RepID=A9QMH2_9BILA
          Length = 386

 Score =  154 bits (388), Expect = 5e-36
 Identities = 78/108 (72%), Positives = 89/108 (82%)
 Frame = +2

Query: 212 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 391
           +R++L SK V  +H+L  +AF WLL EIE +F QA+A  GEMVGA AAQS+GEPATQMTL
Sbjct: 4   LRSTLCSKKVAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQSLGEPATQMTL 63

Query: 392 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           NTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G AV DAE
Sbjct: 64  NTFHYAGVSAKNVTLGVPRLKEIINVSKNPKTPSLTVFLTGGAVKDAE 111

[213][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
            RepID=UPI0000F24379
          Length = 1739

 Score =  153 bits (387), Expect = 7e-36
 Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 5/168 (2%)
 Frame = +2

Query: 20   KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
            +I++  + + H  R   SD   +     V ++  ++L   G           EL + AQ 
Sbjct: 963  RIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDT---------ELVKEAQA 1013

Query: 185  NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
            NATLLFQ  VR+ LAS+ V+ E +L R +F W++ EIE +FQ+++   GEMVG  AAQSI
Sbjct: 1014 NATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSI 1073

Query: 365  GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
            GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL
Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYL 1121

[214][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
            RepID=C1EA31_9CHLO
          Length = 1720

 Score =  153 bits (387), Expect = 7e-36
 Identities = 78/122 (63%), Positives = 98/122 (80%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            LS  AQ NAT+LF   VR++L++K V+SE RL+  AF W++ E+E+RF+ ALAP G+ +G
Sbjct: 1008 LSVEAQRNATILFFALVRSTLSAKRVMSEFRLSPAAFNWVIGEVESRFKVALAPPGDGIG 1067

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
              AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+IN++K+ KTPSL V LR D  
Sbjct: 1068 TVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKKIKTPSLTVALRKDLA 1127

Query: 524  HD 529
             D
Sbjct: 1128 GD 1129

[215][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3GID7_PICST
          Length = 1739

 Score =  153 bits (387), Expect = 7e-36
 Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 5/168 (2%)
 Frame = +2

Query: 20   KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
            +I++  + + H  R   SD   +     V ++  ++L   G           EL + AQ 
Sbjct: 963  RIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDT---------ELVKEAQA 1013

Query: 185  NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
            NATLLFQ  VR+ LAS+ V+ E +L R +F W++ EIE +FQ+++   GEMVG  AAQSI
Sbjct: 1014 NATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSI 1073

Query: 365  GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
            GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL
Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYL 1121

[216][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BD271
          Length = 1749

 Score =  153 bits (386), Expect = 9e-36
 Identities = 87/180 (48%), Positives = 117/180 (65%), Gaps = 8/180 (4%)
 Frame = +2

Query: 20   KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK--------ELSET 175
            +I++  + + H  R   SD    +D + R          G QD   K         L++ 
Sbjct: 968  RIIQNAQQIFHNGRHKASD--LRLDEVVR----------GVQDLCTKLLVIRGKTALTKE 1015

Query: 176  AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355
            AQ NATLLFQ  +R+ LA++ V+ E +L+R +F W++ EIE +FQ+++   GEMVG  AA
Sbjct: 1016 AQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAA 1075

Query: 356  QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            QSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  ++  D E
Sbjct: 1076 QSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKESAADIE 1135

[217][TOP]
>UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis
           longespiculosa RepID=A9QMG5_9BILA
          Length = 623

 Score =  153 bits (386), Expect = 9e-36
 Identities = 86/178 (48%), Positives = 111/178 (62%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           ++LSP +++ GV  L  R  ++ S ED                           +S+ AQ
Sbjct: 211 TNLSPLRVIEGVRELSKRL-IIVSGED--------------------------RISQQAQ 243

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATLL  + +R++L SK +  +H+L ++ F WLL EIE+RFQQA+       G  A QS
Sbjct: 244 YNATLLMNILLRSTLCSKQMAEKHKLNQEGFEWLLGEIEHRFQQAIVXXXXXXGXLAXQS 303

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           +GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVSK  KTPSL V+L G +  DAE
Sbjct: 304 LGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKSPKTPSLTVFLTGSSAKDAE 361

[218][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
            RepID=B5RSM9_DEBHA
          Length = 1749

 Score =  153 bits (386), Expect = 9e-36
 Identities = 87/180 (48%), Positives = 117/180 (65%), Gaps = 8/180 (4%)
 Frame = +2

Query: 20   KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK--------ELSET 175
            +I++  + + H  R   SD    +D + R          G QD   K         L++ 
Sbjct: 968  RIIQNAQQIFHNGRHKASD--LRLDEVVR----------GVQDLCTKLLVIRGKTALTKE 1015

Query: 176  AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355
            AQ NATLLFQ  +R+ LA++ V+ E +L+R +F W++ EIE +FQ+++   GEMVG  AA
Sbjct: 1016 AQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAA 1075

Query: 356  QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            QSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  ++  D E
Sbjct: 1076 QSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEKESAADIE 1135

[219][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
          Length = 1752

 Score =  153 bits (386), Expect = 9e-36
 Identities = 85/169 (50%), Positives = 108/169 (63%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DL PS I+ G+  L+ +  +         D I R++                      Q
Sbjct: 982  TDLLPSDIINGLNELIAKLTIFRGS-----DRITRDV----------------------Q 1014

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLFQ+ +R+  A K V+ E+RL + AF W++ E+E RFQQA+   GEMVG  AAQS
Sbjct: 1015 NNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQS 1074

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
            IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTPSL +YL
Sbjct: 1075 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYL 1123

[220][TOP]
>UniRef100_A9QME9 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata
           RepID=A9QME9_9BILA
          Length = 378

 Score =  152 bits (385), Expect = 1e-35
 Identities = 76/108 (70%), Positives = 89/108 (82%)
 Frame = +2

Query: 212 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 391
           +R++L SK + + H+L  +AF WLL E+E RFQQA+A  GEMVGA AAQS+GEPATQMTL
Sbjct: 4   IRSTLCSKKMATSHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMTL 63

Query: 392 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           NTFHYAGVSAKNVTLGVPRL+EIINVSK  KTPSL  +L+G A  DAE
Sbjct: 64  NTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTCFLQGAAAKDAE 111

[221][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R4Y0_PICPG
          Length = 1743

 Score =  152 bits (385), Expect = 1e-35
 Identities = 81/125 (64%), Positives = 95/125 (76%)
 Frame = +2

Query: 161  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
            EL + AQ NAT LFQ  VRA LA++ +L E RL R AF W+L  IE +FQ++L   GEMV
Sbjct: 1007 ELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMV 1066

Query: 341  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
            G  AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  + 
Sbjct: 1067 GVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDREI 1126

Query: 521  VHDAE 535
              D E
Sbjct: 1127 ALDIE 1131

[222][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score =  152 bits (384), Expect = 1e-35
 Identities = 86/178 (48%), Positives = 109/178 (61%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL+  +IV GV+ L  R  ++  D                             L++ AQ
Sbjct: 983  SDLTIPEIVEGVQSLCKRLTIVRGDSS---------------------------LAKEAQ 1015

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NAT+LFQ  VR+   +K V+ E+RL R AF W++ EIE +F +++   GEMVG  AAQS
Sbjct: 1016 ENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVGVIAAQS 1075

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL      D E
Sbjct: 1076 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPSVAADIE 1133

[223][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
            RepID=B8BQ02_THAPS
          Length = 1627

 Score =  152 bits (383), Expect = 2e-35
 Identities = 87/178 (48%), Positives = 107/178 (60%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            S+L P  ++  +E +L R  V+  D+                            LS  AQ
Sbjct: 998  SNLHPKDVIEKIEAMLRRLVVVVGDD---------------------------LLSVEAQ 1030

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NAT L+++ +R+ LASK VL E+RL+  A  W+L EIE RF  A    GEM G  AAQS
Sbjct: 1031 NNATTLYRILIRSYLASKRVLREYRLSEAALIWVLGEIEARFHHAKVSPGEMAGVLAAQS 1090

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTP L +YL+     DA+
Sbjct: 1091 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQNHVSGDAD 1148

[224][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
            castellanii RepID=O00820_ACACA
          Length = 1569

 Score =  152 bits (383), Expect = 2e-35
 Identities = 87/178 (48%), Positives = 111/178 (62%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P +IV  +  L+ R  V+   +D                           +S+ AQ
Sbjct: 909  SDLDPCQIVEDLGNLIERLVVIPGQDD---------------------------ISKEAQ 941

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NA LLF + +R +LAS+ VL E+RL + ++ WLL EI +RF ++L   GEM+GA AAQS
Sbjct: 942  ANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCDPGEMIGALAAQS 1001

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            IGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+IN++K  KTPSL VYL      D E
Sbjct: 1002 IGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKTIKTPSLTVYLEPHCSRDHE 1059

[225][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           oxycercus RepID=A9QMS4_9BILA
          Length = 612

 Score =  152 bits (383), Expect = 2e-35
 Identities = 76/125 (60%), Positives = 97/125 (77%)
 Frame = +2

Query: 161 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
           ++S+ AQ NATLL  + +R++L SK V  +HRL ++AF ++L EIENRFQ+A+       
Sbjct: 233 KISQQAQYNATLLMNILIRSTLCSKQVAEKHRLNQEAFEYILGEIENRFQRAIVXXXXXX 292

Query: 341 GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
           G   AQ +G+PATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVSK+ KTPSL V+L+G A
Sbjct: 293 GVLXAQXLGQPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVSKQPKTPSLTVFLQGAA 352

Query: 521 VHDAE 535
             DAE
Sbjct: 353 TKDAE 357

[226][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9WN64_CANDC
          Length = 1735

 Score =  152 bits (383), Expect = 2e-35
 Identities = 85/177 (48%), Positives = 114/177 (64%), Gaps = 5/177 (2%)
 Frame = +2

Query: 20   KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
            +I++  + + H  R   SD   E     V  + +++L   G            L + AQ 
Sbjct: 963  RIIQNAQQIFHNGRYRASDLRLEEIIFGVRELCKKLLVVRGDTP---------LVKEAQE 1013

Query: 185  NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
            NATLLFQ  +R+ LA++ V+ E +L R +F W+L EIE +FQ+++   GEMVG  AAQSI
Sbjct: 1014 NATLLFQCLLRSRLAARRVIEEFKLNRVSFEWVLGEIETQFQKSIVHPGEMVGVVAAQSI 1073

Query: 365  GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP++ VYL  +   D E
Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVYLDPEVASDIE 1130

[227][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5E6J4_LODEL
          Length = 1745

 Score =  152 bits (383), Expect = 2e-35
 Identities = 78/124 (62%), Positives = 95/124 (76%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            L + AQ NATLLFQ  VR+ LAS+ V+ E +L + +F W L EIE +FQ+++   GEMVG
Sbjct: 1001 LMKEAQENATLLFQCLVRSRLASRRVIEEFKLNKASFEWALGEIETQFQKSVVHPGEMVG 1060

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
              AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  +  
Sbjct: 1061 VVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPEVA 1120

Query: 524  HDAE 535
             D E
Sbjct: 1121 SDIE 1124

[228][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
            RepID=C1MI48_9CHLO
          Length = 1694

 Score =  151 bits (381), Expect = 3e-35
 Identities = 76/123 (61%), Positives = 98/123 (79%)
 Frame = +2

Query: 161  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 340
            ELS  AQ N+T+LF   VR++L++K V+ + +L+  AF W++ E+E+RF+ ALAP G+ +
Sbjct: 1009 ELSLEAQRNSTILFFALVRSTLSAKRVMKDFKLSPAAFNWVVGEVESRFKMALAPPGDGI 1068

Query: 341  GATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDA 520
            G  AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++K+ KTPSL V LR D 
Sbjct: 1069 GTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKKIKTPSLTVALRKDL 1128

Query: 521  VHD 529
              D
Sbjct: 1129 AGD 1131

[229][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score =  151 bits (381), Expect = 3e-35
 Identities = 89/172 (51%), Positives = 108/172 (62%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            S+L P +IVR V  LL R  V+T ++                            LS  AQ
Sbjct: 925  SNLRPEEIVRDVNDLLSRCIVITGEDG---------------------------LSTMAQ 957

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF + VR  LA+K V +EHRL R AF WL+ EIE+RF+ A     EMVG  AAQS
Sbjct: 958  HNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLIGEIESRFKAAKVNPAEMVGTIAAQS 1017

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGD 517
            IGEPATQMTLNTFH+AGV +KNVTLGVPRL+EIINV+   +TPSL+V L+ +
Sbjct: 1018 IGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVATNLRTPSLLVCLKAN 1069

[230][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
            RepID=C4Y5N4_CLAL4
          Length = 1402

 Score =  150 bits (378), Expect = 7e-35
 Identities = 84/177 (47%), Positives = 116/177 (65%), Gaps = 5/177 (2%)
 Frame = +2

Query: 20   KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
            +I++  + + H  R   SD   +     V A+  ++L   G +          L++ AQ 
Sbjct: 922  RIIQNAQQIFHSGRQRASDLKLDEIVEGVKALCSKLLVIRGKS---------RLAKEAQE 972

Query: 185  NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
            +ATLLFQ  VR+ LA++ ++ E +L+R +F W+  EIE +FQ+++   GEMVG  AAQSI
Sbjct: 973  DATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGEIETQFQKSIVHPGEMVGVIAAQSI 1032

Query: 365  GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  +   D E
Sbjct: 1033 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPEIASDIE 1089

[231][TOP]
>UniRef100_C5LSN9 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
            RepID=C5LSN9_9ALVE
          Length = 1667

 Score =  149 bits (376), Expect = 1e-34
 Identities = 85/172 (49%), Positives = 106/172 (61%)
 Frame = +2

Query: 14   PSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 193
            P ++V+ VE  L R RV+    D +V                        L   AQ NAT
Sbjct: 1019 PQEVVQKVEETLDRLRVIRGLTDDQV------------------------LGWEAQHNAT 1054

Query: 194  LLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEP 373
            ++ Q H+R  LAS+ +L   RL ++A  WLL E+E RF+++L  AGE VG  AAQSIGEP
Sbjct: 1055 VVLQAHLRYHLASRKLLERDRLGQRAVDWLLGEVEQRFEKSLVAAGESVGTIAAQSIGEP 1114

Query: 374  ATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
            ATQMTLNTFH+AGV +KNVTLGVPRL+EIINV+K  KTPS+ VYL  D   D
Sbjct: 1115 ATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVAKNLKTPSMTVYLHPDYASD 1166

[232][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5ACI7_CANAL
          Length = 1728

 Score =  149 bits (376), Expect = 1e-34
 Identities = 83/177 (46%), Positives = 113/177 (63%), Gaps = 5/177 (2%)
 Frame = +2

Query: 20   KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
            +I++  + + H  R   SD   E     V  +  ++L   G            L + AQ 
Sbjct: 963  RIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGDTP---------LVKEAQE 1013

Query: 185  NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
            NATLLFQ  +R+ LA++ V+ E +L R +F W++ EIE +FQ+++   GEMVG  AAQSI
Sbjct: 1014 NATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSI 1073

Query: 365  GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP++ V+L  +   D E
Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVFLDPEVASDIE 1130

[233][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YN85_CANAL
          Length = 1742

 Score =  149 bits (376), Expect = 1e-34
 Identities = 83/177 (46%), Positives = 113/177 (63%), Gaps = 5/177 (2%)
 Frame = +2

Query: 20   KIVRGVELLLHRTRVLTSDEDAE-----VDAIAREMLPPDGSASGPQDEALKELSETAQL 184
            +I++  + + H  R   SD   E     V  +  ++L   G            L + AQ 
Sbjct: 963  RIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGDTP---------LVKEAQE 1013

Query: 185  NATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 364
            NATLLFQ  +R+ LA++ V+ E +L R +F W++ EIE +FQ+++   GEMVG  AAQSI
Sbjct: 1014 NATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSI 1073

Query: 365  GEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            GEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP++ V+L  +   D E
Sbjct: 1074 GEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTVFLDPEVASDIE 1130

[234][TOP]
>UniRef100_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cryptosporidium parvum
            Iowa II RepID=Q5CUJ2_CRYPV
          Length = 1902

 Score =  148 bits (374), Expect = 2e-34
 Identities = 74/119 (62%), Positives = 92/119 (77%)
 Frame = +2

Query: 179  QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQ 358
            Q NAT L  +H+R+SLASK +L   RL   AF W+L EIE++F ++LA +GEMVG  AAQ
Sbjct: 1066 QKNATTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQ 1125

Query: 359  SIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            SIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K  +TP+L VYL     +D E
Sbjct: 1126 SIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQE 1184

[235][TOP]
>UniRef100_Q5CH45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
            RepID=Q5CH45_CRYHO
          Length = 1895

 Score =  148 bits (374), Expect = 2e-34
 Identities = 74/119 (62%), Positives = 92/119 (77%)
 Frame = +2

Query: 179  QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQ 358
            Q NAT L  +H+R+SLASK +L   RL   AF W+L EIE++F ++LA +GEMVG  AAQ
Sbjct: 1059 QKNATTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQ 1118

Query: 359  SIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            SIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K  +TP+L VYL     +D E
Sbjct: 1119 SIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQE 1177

[236][TOP]
>UniRef100_A9UED6 RNA polymerase 2 largest subunit (Fragment) n=1 Tax=Diploscapter
           sp. JU359 RepID=A9UED6_9BILA
          Length = 374

 Score =  148 bits (373), Expect = 3e-34
 Identities = 75/108 (69%), Positives = 89/108 (82%)
 Frame = +2

Query: 212 VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 391
           +R++L SK +   ++L  +AF WLL E+E RF QA+A  GEMVGA AAQS+GEPATQMTL
Sbjct: 5   LRSTLCSKKMGMAYKLDSEAFEWLLGEVEQRFNQAIAQPGEMVGALAAQSLGEPATQMTL 64

Query: 392 NTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           NTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V+L+G A  DAE
Sbjct: 65  NTFHYAGVSAKNVTLGVPRLKEIINVSKKLKTPSLTVFLQGAAAKDAE 112

[237][TOP]
>UniRef100_A9QMF7 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera pseudoteres
           RepID=A9QMF7_9PELO
          Length = 366

 Score =  148 bits (373), Expect = 3e-34
 Identities = 74/106 (69%), Positives = 87/106 (82%)
 Frame = +2

Query: 218 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 397
           ++L SK +  +H+L   AF WLL EIE+RFQQA+   GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1   STLCSKQMADKHKLNESAFDWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMTLNT 60

Query: 398 FHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
           FH+AGVSAKNVTLGVPRL+EIINVSK  +TPSL V+L+G A  DAE
Sbjct: 61  FHFAGVSAKNVTLGVPRLKEIINVSKSPRTPSLTVFLQGAAAKDAE 106

[238][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
          Length = 1748

 Score =  148 bits (373), Expect = 3e-34
 Identities = 82/178 (46%), Positives = 112/178 (62%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P++++  V+ LL R  ++  D+                            +S+ AQ
Sbjct: 999  SDLHPAEVIPQVQALLDRLLIVRGDDP---------------------------ISQEAQ 1031

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF+  +R+ LA + +++E+ + + AF  ++  IE+RF +A APAGEMVG  AAQS
Sbjct: 1032 ENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKANAPAGEMVGVLAAQS 1091

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY      HD E
Sbjct: 1092 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEPGRTHDKE 1149

[239][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
            RepID=B2AA31_PODAN
          Length = 1748

 Score =  147 bits (371), Expect = 5e-34
 Identities = 82/169 (48%), Positives = 108/169 (63%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL+P  ++  V+ LL R  V+  ++                           ELS  A 
Sbjct: 995  SDLTPKDVIPAVQALLARMVVVRGED---------------------------ELSREAD 1027

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NAT+LF++ +R+ LA K +  E RL + AF  +L E+ENR+ +++   GEMVG  AAQS
Sbjct: 1028 YNATILFKIQIRSRLAFKRLAVEQRLNKLAFDHVLGELENRWSRSMVSPGEMVGVLAAQS 1087

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
            IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+K  KTPS+VVYL
Sbjct: 1088 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKTPSMVVYL 1136

[240][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
            RepID=B3RM26_TRIAD
          Length = 1784

 Score =  146 bits (369), Expect = 8e-34
 Identities = 79/124 (63%), Positives = 93/124 (75%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            +S+ AQ NATLLF + +R+ L+SK V  E+ LT +AF WL+ E++          GEMVG
Sbjct: 1017 ISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEVQ---------PGEMVG 1067

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAV 523
              AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINVSK+ KTPSL V L G A 
Sbjct: 1068 PLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVILTGPAA 1127

Query: 524  HDAE 535
             DAE
Sbjct: 1128 RDAE 1131

[241][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
            tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
          Length = 1706

 Score =  146 bits (368), Expect = 1e-33
 Identities = 82/176 (46%), Positives = 108/176 (61%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            +DL P+++++ V  LL R  V+  ++   V+A                           Q
Sbjct: 936  TDLHPTEVIQIVNNLLERLIVVVGNDPLSVEA---------------------------Q 968

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NAT L+++ +R  L+SK VL + RL++ A  W++ EIE RF  A+   GEM G  AAQS
Sbjct: 969  SNATTLYRILIRTMLSSKRVLKDWRLSKAALNWVVGEIETRFNIAMVNPGEMAGVLAAQS 1028

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHD 529
            IGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K  KTP L +YL+ +   D
Sbjct: 1029 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTPKTPGLTIYLQEEVSGD 1084

[242][TOP]
>UniRef100_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
            RepID=B6AG69_9CRYT
          Length = 1927

 Score =  145 bits (367), Expect = 1e-33
 Identities = 83/174 (47%), Positives = 113/174 (64%)
 Frame = +2

Query: 14   PSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 193
            P  I++ VE LL +  +L     +  D +    LPP        D  + E+    Q NAT
Sbjct: 1020 PVTIIKQVEGLLDK--LLLWKNMSTKDNLDNPKLPPTF------DNIIAEV----QKNAT 1067

Query: 194  LLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEP 373
             L  +H+R++LASK +L   RL   AF W++ EI+++F ++LA +GEMVG  AAQSIGEP
Sbjct: 1068 TLLGIHIRSALASKKILEIDRLGPTAFEWVIGEIQHQFYRSLAHSGEMVGTIAAQSIGEP 1127

Query: 374  ATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            ATQMTLNTFH+AGV +KNVTLGVPRL+E+INV+K  +TP+L +YL     +D E
Sbjct: 1128 ATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTIYLENSIANDQE 1181

[243][TOP]
>UniRef100_UPI000187E3DF hypothetical protein MPER_04443 n=1 Tax=Moniliophthora perniciosa
           FA553 RepID=UPI000187E3DF
          Length = 343

 Score =  145 bits (365), Expect = 2e-33
 Identities = 83/165 (50%), Positives = 104/165 (63%)
 Frame = +2

Query: 2   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
           SDL P+ IV  V+ L  R  V+  ++D                           LS  AQ
Sbjct: 187 SDLEPAYIVDAVKALCERLIVVRGNDD---------------------------LSREAQ 219

Query: 182 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            NATL F++H+RA+ AS+ VL +  L R+AF W+L E+E++F Q+L   GEM G  AAQS
Sbjct: 220 DNATLRFRMHLRATFASRRVLEKFHLNREAFEWVLGEVESKFNQSLVNPGEMCGTLAAQS 279

Query: 362 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSL 496
           IGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EII V+   KTPS+
Sbjct: 280 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIIYVATHIKTPSV 324

[244][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
            54-1255 RepID=B6H9U6_PENCW
          Length = 1733

 Score =  145 bits (365), Expect = 2e-33
 Identities = 81/178 (45%), Positives = 112/178 (62%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P++++  V+ LL R  ++  ++                            +S+ AQ
Sbjct: 995  SDLHPAEVIPQVQQLLDRLVIVRGNDP---------------------------ISQEAQ 1027

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
            +NATLLF+  +R+ LA + +++++ L + AF  +L  IE+RF +A A  GEMVG  AAQS
Sbjct: 1028 VNATLLFKAQLRSRLAFRRLVTDYSLNKLAFQHVLGAIESRFARAAANPGEMVGVLAAQS 1087

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY  G   HD E
Sbjct: 1088 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQEGVKTHDKE 1145

[245][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
            albo-atrum VaMs.102 RepID=C9SR21_9PEZI
          Length = 1756

 Score =  144 bits (363), Expect = 4e-33
 Identities = 85/178 (47%), Positives = 111/178 (62%), Gaps = 1/178 (0%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL+P  ++  V  +L R  V+                 PDG            LS+ A 
Sbjct: 994  SDLTPQDVIPAVSSMLDRMTVVRG---------------PDG------------LSKEAD 1026

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NAT+LF+ H+R+ LA K V    RL + AF+ +L E+E R+ +A    GEMVG  AAQS
Sbjct: 1027 YNATILFKAHIRSRLAFKGVACLQRLNKLAFSHVLGELEGRWAKASISPGEMVGVLAAQS 1086

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL-RGDAVHDA 532
            IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+++  KTPS+VVYL  G+A  +A
Sbjct: 1087 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNIKTPSMVVYLSEGNATQEA 1144

[246][TOP]
>UniRef100_A9BLB7 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BLB7_9CRYP
          Length = 1464

 Score =  144 bits (362), Expect = 5e-33
 Identities = 68/112 (60%), Positives = 93/112 (83%)
 Frame = +2

Query: 176  AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355
            ++LNATLLF++ +R+ LASK++  +++ ++ AF W+L EI  ++++++A  GEMVG  +A
Sbjct: 1011 SRLNATLLFRIFLRSKLASKIIFFKYKFSKVAFLWVLNEICTQYRKSIASPGEMVGTISA 1070

Query: 356  QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            QSIG+PATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV +  KTPSL +Y R
Sbjct: 1071 QSIGQPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVLQTVKTPSLTIYFR 1122

[247][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CNZ4_ASPCL
          Length = 1765

 Score =  144 bits (362), Expect = 5e-33
 Identities = 83/178 (46%), Positives = 109/178 (61%)
 Frame = +2

Query: 2    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 181
            SDL P+++V  V+ LL R  V+  D+                            +S  AQ
Sbjct: 1001 SDLHPAEVVPQVQSLLDRLLVVRGDDP---------------------------ISHEAQ 1033

Query: 182  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQS 361
             NATLLF+  +R+ LA + +++E+ + + AF  +L  IE+RF +A A  GEMVG  AAQS
Sbjct: 1034 ENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIESRFAKAAASPGEMVGVLAAQS 1093

Query: 362  IGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            IGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV+   KTPS+ VY      HD E
Sbjct: 1094 IGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVYQMPSKCHDKE 1151

[248][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
            RepID=Q9BMP2_STYMT
          Length = 1678

 Score =  143 bits (361), Expect = 7e-33
 Identities = 69/112 (61%), Positives = 92/112 (82%)
 Frame = +2

Query: 176  AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 355
            A  ++T LF++++R+ L SK V+ + RL++ AF W+L EI++RF QAL   GEMVG+  A
Sbjct: 926  ANSDSTWLFKIYLRSLLNSKAVIQQERLSKDAFNWILGEIKSRFDQALVNPGEMVGSIGA 985

Query: 356  QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLR 511
            QS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K  KTPS+ ++L+
Sbjct: 986  QSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKNIKTPSMKIFLK 1037

[249][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
            RepID=A1YIA7_ISSOR
          Length = 1647

 Score =  143 bits (361), Expect = 7e-33
 Identities = 82/172 (47%), Positives = 108/172 (62%)
 Frame = +2

Query: 20   KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLL 199
            +IV+  + + H  R   SD   E    + + L    +        L E  E    N+TLL
Sbjct: 886  RIVQNAQQIFHVDRYKASDLTIEEIVKSVQELCKKFTVVRGDGGCLTEARE----NSTLL 941

Query: 200  FQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 379
            FQ  +R+ LA++ VL E++L + AF W++  I  +F ++L   GEMVG  AAQSIGEPAT
Sbjct: 942  FQCLIRSKLATRRVLEEYKLNKDAFEWVVGTIAQQFARSLVNPGEMVGVVAAQSIGEPAT 1001

Query: 380  QMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAE 535
            QMTLNTFHYAGVS+KNVTLGVPRL+EI+NV+K  KTP+L VYL  +   D E
Sbjct: 1002 QMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNFKTPALTVYLEEEYATDIE 1053

[250][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
            RepID=A8IRZ2_CHLRE
          Length = 1789

 Score =  143 bits (360), Expect = 9e-33
 Identities = 75/115 (65%), Positives = 88/115 (76%)
 Frame = +2

Query: 164  LSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVG 343
            LS  AQ NAT++F   VR  LASK V+SE++L  KA  WLL E+E RF  A A AGE VG
Sbjct: 1022 LSVEAQRNATIMFHSLVRMHLASKRVMSEYKLNNKALDWLLGELETRFFLAQAHAGECVG 1081

Query: 344  ATAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLQEIINVSKRTKTPSLVVYL 508
              AAQS+GEP TQMTLNTFH+AGVSAKNVTLGVPRL E+IN++K  KTP+L V+L
Sbjct: 1082 TVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTELINLAKNIKTPTLTVHL 1136