AU195353 ( PFL073g04_r )

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[1][TOP]
>UniRef100_A8I9Z6 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
           RepID=A8I9Z6_CHLRE
          Length = 1634

 Score =  105 bits (261), Expect = 2e-21
 Identities = 49/99 (49%), Positives = 74/99 (74%), Gaps = 4/99 (4%)
 Frame = +2

Query: 176 GVDEEY----EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESP 343
           G DE++    ++  D +I  ED+W VI A+FD+ GLVRQQL S+NEFV+VT+Q ++DE+P
Sbjct: 3   GADEDHMEVVQEEEDTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETP 62

Query: 344 DIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +IV+ PE Q++PG +A +E  + +IKFGQ+ +S+P  TE
Sbjct: 63  EIVIKPESQHLPGVEAAEEK-EYIIKFGQVYLSRPQITE 100

[2][TOP]
>UniRef100_Q1L5X1 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
           RepID=Q1L5X1_CHLRE
          Length = 1607

 Score =  103 bits (257), Expect = 6e-21
 Identities = 47/92 (51%), Positives = 70/92 (76%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E  ++  D +I  ED+W VI A+FD+ GLVRQQL S+NEFV+VT+Q ++DE+P+IV+ PE
Sbjct: 2   EVVQEEEDTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPE 61

Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            Q++PG +A +E  + +IKFGQ+ +S+P  TE
Sbjct: 62  SQHLPGVEAAEEK-EYIIKFGQVYLSRPQITE 92

[3][TOP]
>UniRef100_A9SJE5 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
           patens RepID=A9SJE5_PHYPA
          Length = 1185

 Score =  102 bits (255), Expect = 1e-20
 Identities = 52/95 (54%), Positives = 67/95 (70%)
 Frame = +2

Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355
           G DEEY+D  + +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI +
Sbjct: 3   GGDEEYDDEEE-EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIEI 61

Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            PE Q+ PGR A   +    I FGQ+ +SKP  TE
Sbjct: 62  RPESQHNPGRQAEIGDVTYKINFGQIYLSKPMMTE 96

[4][TOP]
>UniRef100_B9RZ91 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
           RepID=B9RZ91_RICCO
          Length = 1194

 Score =  102 bits (254), Expect = 1e-20
 Identities = 49/94 (52%), Positives = 67/94 (71%)
 Frame = +2

Query: 179 VDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI 358
           ++E+YED ++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + 
Sbjct: 11  LNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70

Query: 359 PEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           PE Q+ PG  +    T   I FGQ+ +SKP  TE
Sbjct: 71  PESQHNPGHQSDFAETIYKISFGQIYLSKPMMTE 104

[5][TOP]
>UniRef100_Q10G20 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=Q10G20_ORYSJ
          Length = 1222

 Score = 99.8 bits (247), Expect = 9e-20
 Identities = 53/106 (50%), Positives = 69/106 (65%), Gaps = 5/106 (4%)
 Frame = +2

Query: 158 EDGVYNGVDEEYED-----PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQ 322
           E G   G + E E+     P++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ
Sbjct: 30  EYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ 89

Query: 323 RLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            +VDES DI + PE Q+ PGR A    T   I FGQ+ +SKP  TE
Sbjct: 90  EIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTE 135

[6][TOP]
>UniRef100_A7PJ31 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7PJ31_VITVI
          Length = 1220

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 50/97 (51%), Positives = 66/97 (68%)
 Frame = +2

Query: 170 YNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           Y+    E E+ +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI
Sbjct: 7   YDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 66

Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            + PE Q+ PGR +    T   I FGQ+ +SKP  TE
Sbjct: 67  EIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTE 103

[7][TOP]
>UniRef100_A5C1N0 DNA-directed RNA polymerase n=2 Tax=Vitis RepID=A5C1N0_VITVI
          Length = 1193

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 50/97 (51%), Positives = 66/97 (68%)
 Frame = +2

Query: 170 YNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           Y+    E E+ +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI
Sbjct: 7   YDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 66

Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            + PE Q+ PGR +    T   I FGQ+ +SKP  TE
Sbjct: 67  EIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTE 103

[8][TOP]
>UniRef100_C5WR62 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
           RepID=C5WR62_SORBI
          Length = 1218

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 54/107 (50%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
 Frame = +2

Query: 152 GNEDGVYNGVDEEYEDPNDAD----ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319
           G  DG  +G + E E   D D    I  +DAW VI+AYF+E GLVRQQL S++EF+  TM
Sbjct: 40  GGGDGDGDGEEMEEEADGDPDLRDEIGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 99

Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           Q +VDES DI + PE Q+ PGR A    T   I FGQ+ +SKP  TE
Sbjct: 100 QEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTE 146

[9][TOP]
>UniRef100_P38420 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Arabidopsis
           thaliana RepID=RPB2_ARATH
          Length = 1188

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 49/97 (50%), Positives = 64/97 (65%)
 Frame = +2

Query: 170 YNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           Y    +  ED +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI
Sbjct: 6   YEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 65

Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            + PE Q+ PG  +    T   I FGQ+ +SKP  TE
Sbjct: 66  EIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTE 102

[10][TOP]
>UniRef100_Q1L5Y8 DNA-directed RNA polymerase n=1 Tax=Antirrhinum majus
           RepID=Q1L5Y8_ANTMA
          Length = 1200

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 49/93 (52%), Positives = 63/93 (67%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           +E  E+  + DIS EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + P
Sbjct: 18  NENDEEEEEEDISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 77

Query: 362 EDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           E Q+ PG+      T   I FGQ+ +SKP  TE
Sbjct: 78  ESQHNPGQQPDFAETIYKISFGQIYLSKPMMTE 110

[11][TOP]
>UniRef100_B9FA12 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
           RepID=B9FA12_ORYSJ
          Length = 1218

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 48/87 (55%), Positives = 62/87 (71%)
 Frame = +2

Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379
           P++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ P
Sbjct: 45  PDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 104

Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460
           GR A    T   I FGQ+ +SKP  TE
Sbjct: 105 GRQAEFAETLHKISFGQIYLSKPMMTE 131

[12][TOP]
>UniRef100_Q1L5Z3 DNA-directed RNA polymerase n=1 Tax=Antirrhinum majus
           RepID=Q1L5Z3_ANTMA
          Length = 1198

 Score = 97.8 bits (242), Expect = 3e-19
 Identities = 50/110 (45%), Positives = 68/110 (61%)
 Frame = +2

Query: 131 LYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVS 310
           +Y   D   +  V    D + E+  D DIS EDAW VI++YF+E GLVRQQL S++EF+ 
Sbjct: 1   MYGGGDPYPDQNVVEVHDHDEEEKEDEDISQEDAWTVISSYFEEKGLVRQQLDSFDEFIQ 60

Query: 311 VTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            TMQ +VDES +I + PE Q+ PG ++        I FGQ+ +SKP  TE
Sbjct: 61  NTMQEIVDESSNIEIRPESQHNPGGNSDFAEAMYRISFGQIYLSKPMMTE 110

[13][TOP]
>UniRef100_Q1L5B4 DNA-directed RNA polymerase n=1 Tax=Rhododendron macrophyllum
           RepID=Q1L5B4_RHOMC
          Length = 1207

 Score = 97.4 bits (241), Expect = 4e-19
 Identities = 50/110 (45%), Positives = 71/110 (64%)
 Frame = +2

Query: 131 LYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVS 310
           + ++ D G+ DG       + +D ++ +IS EDAW VI+AYF+E GLVRQQL S++EF+ 
Sbjct: 17  IVNVGDGGDGDG-------DGDDDDEEEISQEDAWTVISAYFEEKGLVRQQLDSFDEFIQ 69

Query: 311 VTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            TMQ +VDE+ DI + PE Q+ PGR +        I FGQ+ +SKP  TE
Sbjct: 70  NTMQEIVDEAADIEIKPESQHNPGRQSDFVEMVYRISFGQIYLSKPMMTE 119

[14][TOP]
>UniRef100_Q42877 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Solanum
           lycopersicum RepID=RPB2_SOLLC
          Length = 1191

 Score = 97.1 bits (240), Expect = 6e-19
 Identities = 49/99 (49%), Positives = 67/99 (67%), Gaps = 5/99 (5%)
 Frame = +2

Query: 179 VDEEYE-----DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESP 343
           +++EYE     D ++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES 
Sbjct: 3   MEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 62

Query: 344 DIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           DI + PE Q+ PG  +    T   I FGQ+ +SKP  TE
Sbjct: 63  DIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTE 101

[15][TOP]
>UniRef100_Q1L5Y9 DNA-directed RNA polymerase n=1 Tax=Petunia x hybrida
           RepID=Q1L5Y9_PETHY
          Length = 1195

 Score = 96.7 bits (239), Expect = 7e-19
 Identities = 47/94 (50%), Positives = 64/94 (68%)
 Frame = +2

Query: 179 VDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI 358
           ++ E E+  + +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + 
Sbjct: 12  MNNEEEEEEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 71

Query: 359 PEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           PE Q+ PG  +    T   I FGQ+ +SKP  TE
Sbjct: 72  PESQHNPGHQSDFAETIYKINFGQIYLSKPMMTE 105

[16][TOP]
>UniRef100_B9H2V2 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
           RepID=B9H2V2_POPTR
          Length = 690

 Score = 96.3 bits (238), Expect = 9e-19
 Identities = 48/92 (52%), Positives = 62/92 (67%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E  E+  D +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE
Sbjct: 2   EPEEEDADEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 61

Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            Q+ PG  +    T   I FGQ+ +SKP  TE
Sbjct: 62  SQHNPGHQSDFAETIYKISFGQIYLSKPMMTE 93

[17][TOP]
>UniRef100_Q1L5B5 DNA-directed RNA polymerase n=1 Tax=Rhododendron macrophyllum
           RepID=Q1L5B5_RHOMC
          Length = 1191

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 48/96 (50%), Positives = 65/96 (67%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYE---DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           +EEY+   +  + +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI 
Sbjct: 6   EEEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 65

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           + PE Q+ PG  +    T   I FGQ+ +SKP  TE
Sbjct: 66  IRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTE 101

[18][TOP]
>UniRef100_Q54J75 DNA-directed RNA polymerase II subunit rpb2 n=1 Tax=Dictyostelium
           discoideum RepID=RPB2_DICDI
          Length = 1170

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 46/91 (50%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
 Frame = +2

Query: 179 VDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI 358
           ++++ +D   ADIS ED W VI+AYF E GLVRQQL S++EF+  TMQ ++DESP I L 
Sbjct: 6   MNDDSQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLR 65

Query: 359 PEDQYVPGRDAPDENTKVV-IKFGQLRVSKP 448
           PE Q+ PG+     N     +KFGQ+ +SKP
Sbjct: 66  PESQHHPGQAVVSNNVSTFSVKFGQIYLSKP 96

[19][TOP]
>UniRef100_Q1L5Z2 DNA-directed RNA polymerase n=1 Tax=Petunia x hybrida
           RepID=Q1L5Z2_PETHY
          Length = 1203

 Score = 94.0 bits (232), Expect = 5e-18
 Identities = 49/107 (45%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = +2

Query: 146 DSGNEDGVYNGVDEEYEDPNDA--DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319
           D   +D     VDE+ +D +D   +I+ +DAW VI+AYF+E GLVRQQL S++EF+  TM
Sbjct: 9   DENIDDRTTMAVDEQEDDYDDESQEITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 68

Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           Q +VDE+ DI + PE Q+ P R +   +T   IKF Q+ +S+P  TE
Sbjct: 69  QEIVDETADIEIRPESQHNPARQSDFVDTIYKIKFTQIYLSRPMMTE 115

[20][TOP]
>UniRef100_Q1L5Z1 DNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum
           RepID=Q1L5Z1_SOLLC
          Length = 1205

 Score = 93.2 bits (230), Expect = 8e-18
 Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
 Frame = +2

Query: 137 DMSDSGNEDGVYNG-VDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSV 313
           DM    +E G   G VDE+ ++    +I+ +DAW VI++YF+E GLVRQQL S++EF+  
Sbjct: 13  DMVQVEDEGGEGRGDVDEDEDEDESREITQDDAWAVISSYFEEKGLVRQQLDSFDEFIQN 72

Query: 314 TMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           TMQ +VDE+ DI + PE Q+ P R      T   IKF Q+ +S+P  TE
Sbjct: 73  TMQEIVDETADIEIRPESQHNPSRQPDFVETIYKIKFTQIYLSRPMMTE 121

[21][TOP]
>UniRef100_A4RQU3 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus
           CCE9901 RepID=A4RQU3_OSTLU
          Length = 1174

 Score = 90.5 bits (223), Expect = 5e-17
 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
 Frame = +2

Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373
           ED  + +I  EDAW VI+++F+E GLVRQQL S+NEF+  TMQ +VDE  +I L PE Q+
Sbjct: 7   EDDEEEEIGQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIELTPEHQH 66

Query: 374 VPGRDAPDENTKVV-IKFGQLRVSKPNFTE 460
           +PG+D      K   I F Q+ +SKP  TE
Sbjct: 67  MPGQDIDSMEKKTYKISFNQIYLSKPMVTE 96

[22][TOP]
>UniRef100_Q1L5Z4 DNA-directed RNA polymerase n=1 Tax=Nicotiana sylvestris
           RepID=Q1L5Z4_NICSY
          Length = 1203

 Score = 90.1 bits (222), Expect = 7e-17
 Identities = 49/108 (45%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
 Frame = +2

Query: 146 DSGNEDGVYNGVDEEYEDPND---ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVT 316
           D   +D V   VDEE E        +I+ +DAW VI+AYF+E GLVRQQL S++EF+  T
Sbjct: 9   DENVDDRVLMAVDEEEEQAEGDEAQEITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNT 68

Query: 317 MQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           MQ +VDE+ +I + PE Q+ P R      T   IKF Q+ +S+P  TE
Sbjct: 69  MQEIVDETANIEIRPESQHNPSRQPDFVETIYKIKFTQIYLSRPMMTE 116

[23][TOP]
>UniRef100_Q7RQI2 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii
           RepID=Q7RQI2_PLAYO
          Length = 1312

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 43/99 (43%), Positives = 64/99 (64%), Gaps = 6/99 (6%)
 Frame = +2

Query: 182 DEEYEDPNDAD----ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           D+  ED +D D    I+ ED+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P+I
Sbjct: 18  DQNIEDVSDKDDEDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNI 77

Query: 350 VLIPEDQYVPGRDAPDENTKVV--IKFGQLRVSKPNFTE 460
            + P+ QY P +   DEN  ++  +KFGQL + +P F E
Sbjct: 78  EIKPQPQYRPDK---DENNNIIYSLKFGQLSLDRPFFDE 113

[24][TOP]
>UniRef100_Q4YWL7 Putative uncharacterized protein (Fragment) n=1 Tax=Plasmodium
           berghei RepID=Q4YWL7_PLABE
          Length = 467

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 43/99 (43%), Positives = 64/99 (64%), Gaps = 6/99 (6%)
 Frame = +2

Query: 182 DEEYEDPNDAD----ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           D+  ED +D D    I+ ED+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P+I
Sbjct: 18  DQNLEDVSDKDDDDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNI 77

Query: 350 VLIPEDQYVPGRDAPDENTKVV--IKFGQLRVSKPNFTE 460
            + P+ QY P +   DEN  ++  +KFGQL + +P F E
Sbjct: 78  EIKPQPQYRPDK---DENNNIIYSLKFGQLSLDRPFFDE 113

[25][TOP]
>UniRef100_C1E1U0 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
           RepID=C1E1U0_9CHLO
          Length = 1178

 Score = 85.9 bits (211), Expect = 1e-15
 Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           +E      + +I  EDAW VI+++F+E GL RQQL S+NEF+  TMQ +VDE  D  + P
Sbjct: 3   EENVAVEEEEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFTIEP 62

Query: 362 EDQYVPGRDAPDE-NTKVVIKFGQLRVSKPNFTE 460
           E+Q++PG +A  +   K  ++F Q+ +SKP  TE
Sbjct: 63  EEQHMPGEEADGKGKKKYKVEFKQIYLSKPMVTE 96

[26][TOP]
>UniRef100_Q1WMR3 DNA-directed RNA polymerase n=1 Tax=Coprinellus disseminatus
           RepID=Q1WMR3_COPDI
          Length = 1241

 Score = 85.9 bits (211), Expect = 1e-15
 Identities = 46/95 (48%), Positives = 65/95 (68%)
 Frame = +2

Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355
           G+D++ +D   A+I+ ED W VI ++FD+ GLVRQQL S++EFV  TMQ LVDE+ D++L
Sbjct: 36  GMDDDGDD--FAEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLIL 93

Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
              DQ+  G D  D   +  IKFGQ+ +S+P  TE
Sbjct: 94  DQADQHT-GHDT-DMTRRYEIKFGQIYLSRPTVTE 126

[27][TOP]
>UniRef100_A8PVJ8 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
           RepID=A8PVJ8_MALGO
          Length = 1197

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 43/90 (47%), Positives = 60/90 (66%)
 Frame = +2

Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370
           YED    +IS ED W+VI A+F+E GLVRQQ+ S+NEF+S T+Q LV+ES  + L   DQ
Sbjct: 2   YEDEGVEEISQEDCWDVIKAFFEEKGLVRQQIDSFNEFMSNTVQELVEESKSLTLEQSDQ 61

Query: 371 YVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +     A D+  +  I+FGQ+ ++KP  TE
Sbjct: 62  HT--GQAEDKTRRYEIEFGQIYMNKPQQTE 89

[28][TOP]
>UniRef100_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8PJ53_COPC7
          Length = 742

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 46/92 (50%), Positives = 62/92 (67%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           EEY D + A I+ ED W VI+++FD+ GLVRQQL S++EFV  TMQ LVDE+ D++L   
Sbjct: 20  EEY-DEDYAPITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQA 78

Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           DQ+     A D   +  IKFGQ+ +S+P  TE
Sbjct: 79  DQHT--GQAGDMTRRYEIKFGQIYLSRPTVTE 108

[29][TOP]
>UniRef100_A8N2R8 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8N2R8_COPC7
          Length = 1222

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 46/92 (50%), Positives = 62/92 (67%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           EEY D + A I+ ED W VI+++FD+ GLVRQQL S++EFV  TMQ LVDE+ D++L   
Sbjct: 20  EEY-DEDYAPITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQA 78

Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           DQ+     A D   +  IKFGQ+ +S+P  TE
Sbjct: 79  DQHT--GQAGDMTRRYEIKFGQIYLSRPTVTE 108

[30][TOP]
>UniRef100_B7FVG3 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP
           1055/1 RepID=B7FVG3_PHATR
          Length = 1212

 Score = 84.3 bits (207), Expect = 4e-15
 Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 8/100 (8%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           +E  D ++  ++ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ LVD+S DI + PE
Sbjct: 16  DEVMDIDEIPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPE 75

Query: 365 DQYVPGRD------APDENTKVV--IKFGQLRVSKPNFTE 460
            Q++ G D        ++ TK V  I FGQ+ +SKP   E
Sbjct: 76  IQHMVGYDDEAYDREQEKETKFVFEIHFGQVYLSKPTTVE 115

[31][TOP]
>UniRef100_Q4Y5W4 DNA-directed RNA polymerase II second largest subunit, putative
           (Fragment) n=1 Tax=Plasmodium chabaudi
           RepID=Q4Y5W4_PLACH
          Length = 727

 Score = 84.3 bits (207), Expect = 4e-15
 Identities = 41/97 (42%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
 Frame = +2

Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355
           G+++  +  +D  I+ ED+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P I +
Sbjct: 18  GIEDLSDKDDDDQINEEDSWVVIGSFFG-HGLVNQQIESYNDFIEYRMQEIIDEHPHIEI 76

Query: 356 IPEDQYVPGRDAPDENTKVV--IKFGQLRVSKPNFTE 460
            P+ QY P +   DENT ++  +KFGQL + +P F E
Sbjct: 77  KPQPQYRPDK---DENTNIIYSLKFGQLSLDRPFFDE 110

[32][TOP]
>UniRef100_UPI00017937B7 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide n=1 Tax=Acyrthosiphon pisum
           RepID=UPI00017937B7
          Length = 1101

 Score = 83.6 bits (205), Expect = 6e-15
 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDA-DISAE----DAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLV 331
           +Y+  D+EYE+  +  DIS+E      W VIN+YFDE GLVRQQL S++EF+ +++QR+V
Sbjct: 1   MYDLGDDEYEEEEETEDISSELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIV 60

Query: 332 DESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           ++SP I L  E Q+  G    D  TK  IKF Q+ +SKP   E
Sbjct: 61  EDSPQIELQAESQHTHGE--IDTPTKYQIKFEQIYLSKPTHWE 101

[33][TOP]
>UniRef100_B6AET6 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
           RepID=B6AET6_9CRYT
          Length = 1184

 Score = 83.6 bits (205), Expect = 6e-15
 Identities = 38/85 (44%), Positives = 57/85 (67%)
 Frame = +2

Query: 206 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 385
           D ++  ED+W +I  YF + GLV QQL+S+N+F+   +Q +VDE P IV+IP+ QY P  
Sbjct: 7   DDEVQQEDSWALIGTYFRDRGLVSQQLESFNDFIMYKLQEIVDEHPPIVIIPQPQYRPDE 66

Query: 386 DAPDENTKVVIKFGQLRVSKPNFTE 460
              D + + V+KFGQL +S+P+  E
Sbjct: 67  QI-DTSIQYVLKFGQLSLSRPSVEE 90

[34][TOP]
>UniRef100_Q67XZ1 DNA-directed RNA polymerase II second largest chain n=1
           Tax=Arabidopsis thaliana RepID=Q67XZ1_ARATH
          Length = 124

 Score = 83.2 bits (204), Expect = 8e-15
 Identities = 39/74 (52%), Positives = 52/74 (70%)
 Frame = +2

Query: 170 YNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           Y    +  ED +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI
Sbjct: 6   YEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 65

Query: 350 VLIPEDQYVPGRDA 391
            + PE Q+ PG  +
Sbjct: 66  EIRPESQHNPGHQS 79

[35][TOP]
>UniRef100_B6TQP3 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B6TQP3_MAIZE
          Length = 126

 Score = 83.2 bits (204), Expect = 8e-15
 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 6/89 (6%)
 Frame = +2

Query: 143 SDSGNEDGVYNGVDEEYEDPNDAD------ISAEDAWEVINAYFDEHGLVRQQLQSYNEF 304
           ++  +E G   G  EE ++  D D      I+ +DAW VI+AYF+E GLVRQQL S++EF
Sbjct: 29  AEEDDEVGYGGGGGEEMDEDADGDAEQQEDITQDDAWAVISAYFEEKGLVRQQLDSFDEF 88

Query: 305 VSVTMQRLVDESPDIVLIPEDQYVPGRDA 391
           +  TMQ +VDES DI + PE Q+ PGR A
Sbjct: 89  IQNTMQEIVDESADIEIRPESQHNPGRQA 117

[36][TOP]
>UniRef100_A5KBW7 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
           RepID=A5KBW7_PLAVI
          Length = 1339

 Score = 83.2 bits (204), Expect = 8e-15
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
 Frame = +2

Query: 164 GVYNGVDEEYEDPNDAD--ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337
           G Y   D   E+ ++ +  I+ ED+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE
Sbjct: 12  GEYMHADAPLEEDHEEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDE 71

Query: 338 SPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            P I + P+ QY   RD  ++N    +KFGQL + +P + E
Sbjct: 72  HPQIEIRPQPQYRSDRD-DNKNVMYALKFGQLSLDRPFYDE 111

[37][TOP]
>UniRef100_B8C598 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
           CCMP1335 RepID=B8C598_THAPS
          Length = 1196

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%)
 Frame = +2

Query: 197 DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYV 376
           D +D  ++ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ LVD+S  I + PE Q++
Sbjct: 2   DLDDMPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHL 61

Query: 377 PGRD------APDENTKVV--IKFGQLRVSKPNFTE 460
            G D        +  TK V  +KFGQ+ +SKP   E
Sbjct: 62  VGYDEANFDETMNSTTKKVFEVKFGQVYLSKPTTVE 97

[38][TOP]
>UniRef100_Q5CY45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium parvum Iowa II
           RepID=Q5CY45_CRYPV
          Length = 1177

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 39/89 (43%), Positives = 57/89 (64%)
 Frame = +2

Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373
           E  ND +I  ED+W +I  YF + GLV QQL+S+N+F+   +Q +VDE P I++ P+ QY
Sbjct: 10  EQKND-EIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQY 68

Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            P     D   + V+KFGQL +S+P+  E
Sbjct: 69  RPDEQI-DTKVRYVLKFGQLSLSRPSVEE 96

[39][TOP]
>UniRef100_Q5CN11 DNA-directed RNA polymerase II second largest chain n=1
           Tax=Cryptosporidium hominis RepID=Q5CN11_CRYHO
          Length = 733

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 39/89 (43%), Positives = 57/89 (64%)
 Frame = +2

Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373
           E  ND +I  ED+W +I  YF + GLV QQL+S+N+F+   +Q +VDE P I++ P+ QY
Sbjct: 10  EQKND-EIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQY 68

Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            P     D   + V+KFGQL +S+P+  E
Sbjct: 69  RPDEQI-DTKVRYVLKFGQLSLSRPSVEE 96

[40][TOP]
>UniRef100_Q5KIB7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
           RepID=Q5KIB7_CRYNE
          Length = 1193

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
 Frame = +2

Query: 128 PLYDMSDS----GNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSY 295
           P YD S      G+ED      +E+Y+   D  IS ED W VIN++F+E GLVRQQL+S+
Sbjct: 22  PDYDYSQQTAPKGDED------EEKYDVDEDEPISQEDYWTVINSFFEEKGLVRQQLESF 75

Query: 296 NEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           NEF+  TMQ +VD+   + L    QY     A DE  +  I FGQ+ +++ N TE
Sbjct: 76  NEFIENTMQEIVDDHSRLTLDQFTQYT--GVAGDETRRYEISFGQIYLARVNHTE 128

[41][TOP]
>UniRef100_Q55U25 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
           RepID=Q55U25_CRYNE
          Length = 1245

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
 Frame = +2

Query: 128 PLYDMSDS----GNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSY 295
           P YD S      G+ED      +E+Y+   D  IS ED W VIN++F+E GLVRQQL+S+
Sbjct: 21  PDYDYSQQTAPKGDED------EEKYDVDEDEPISQEDYWTVINSFFEEKGLVRQQLESF 74

Query: 296 NEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           NEF+  TMQ +VD+   + L    QY     A DE  +  I FGQ+ +++ N TE
Sbjct: 75  NEFIENTMQEIVDDHSRLTLDQFTQYT--GVAGDETRRYEISFGQIYLARVNHTE 127

[42][TOP]
>UniRef100_Q4U9X1 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
           RepID=Q4U9X1_THEAN
          Length = 1223

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
 Frame = +2

Query: 188 EYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPED 367
           +Y   +D + + ED W+VI ++F+EHGLV QQ++S+N+F++  MQ ++D  P I + P+ 
Sbjct: 47  QYLKRDDENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPPIEITPQP 106

Query: 368 QYVPGRDAPDENTKVV-IKFGQLRVSKPNFTE 460
            Y P  +   EN+ V  +KFGQL +SKP+  E
Sbjct: 107 NYRPEEEV--ENSVVYKLKFGQLSLSKPSVEE 136

[43][TOP]
>UniRef100_UPI00015B44D8 PREDICTED: similar to ENSANGP00000011389 n=1 Tax=Nasonia
           vitripennis RepID=UPI00015B44D8
          Length = 1175

 Score = 81.3 bits (199), Expect = 3e-14
 Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
 Frame = +2

Query: 182 DEEYEDPNDADISA----EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           +E YED +  +IS+    E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+ESP I
Sbjct: 6   EEHYEDDDSEEISSKVWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEESPQI 65

Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            L  E Q+  G    +  T+ ++KF Q+ +SKP   E
Sbjct: 66  DLQAEAQHRTG--DIETPTRHLVKFEQIYLSKPTHWE 100

[44][TOP]
>UniRef100_UPI0000221AC5 hypothetical protein CBG18197 n=1 Tax=Caenorhabditis briggsae AF16
           RepID=UPI0000221AC5
          Length = 1194

 Score = 81.3 bits (199), Expect = 3e-14
 Identities = 50/109 (45%), Positives = 69/109 (63%), Gaps = 4/109 (3%)
 Frame = +2

Query: 146 DSGNEDGVYNGVDEEYEDPNDADISA----EDAWEVINAYFDEHGLVRQQLQSYNEFVSV 313
           D G +D   +G DEEY D   A+IS     E  W VI+AYFDE GLVRQQL S++EFV +
Sbjct: 6   DDGMQD---DGNDEEYSDET-AEISPDAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQM 61

Query: 314 TMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            +QR+V++SP + L  E+Q++ G D  +   K  +KF Q+ +SKP   E
Sbjct: 62  NVQRIVEDSPPVELQSENQHL-GNDM-ENPAKFSLKFNQIYLSKPTHWE 108

[45][TOP]
>UniRef100_B0WKE9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
           RepID=B0WKE9_CULQU
          Length = 1176

 Score = 80.9 bits (198), Expect = 4e-14
 Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
 Frame = +2

Query: 155 NEDGVYNGVDEEYEDPNDA--DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRL 328
           NEDG +     E EDP +   ++  E  W VINAYFDE GLVRQQL S++EF+ +++QR+
Sbjct: 4   NEDGDHF----EEEDPEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRI 59

Query: 329 VDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           V++SP I L  E Q+  G    +  T+ V+KF Q+ +SKP   E
Sbjct: 60  VEDSPAIELTAEAQHTTG--DIETPTRYVLKFDQIYLSKPTHWE 101

[46][TOP]
>UniRef100_Q27826 DNA-directed RNA polymerase n=1 Tax=Euplotes octocarinatus
           RepID=Q27826_EUPOC
          Length = 1194

 Score = 80.5 bits (197), Expect = 5e-14
 Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
 Frame = +2

Query: 149 SGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRL 328
           SG     YN    +++   D +I+ EDAW VI AYFD+HGLV QQ+ S++ F+S T+Q +
Sbjct: 14  SGGRGDYYN----QHKMDIDDEITQEDAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDI 69

Query: 329 VDESPDIVLIPEDQYVPG-RDAPDENTKVVIKFGQLRVS-KPNFTE 460
           V E+  I + PE Q+ PG  +   EN K  I  GQ+RV+ KP F E
Sbjct: 70  VTENNTISIQPELQFAPGSMNESRENIKYDIILGQVRVNEKPRFKE 115

[47][TOP]
>UniRef100_Q4N2K9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
           RepID=Q4N2K9_THEPA
          Length = 1190

 Score = 80.1 bits (196), Expect = 7e-14
 Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
 Frame = +2

Query: 128 PLYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFV 307
           P YD+    +       VDE + +        ED W+VI ++F+EHGLV QQ++S+N+F+
Sbjct: 35  PKYDIDQDLDHSQYLKAVDENFTE--------EDTWKVIGSFFNEHGLVHQQIESFNDFI 86

Query: 308 SVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV-IKFGQLRVSKPNFTE 460
           +  MQ ++D  P I + P+  Y P  +  +EN+ +  +KFGQL ++KP+  E
Sbjct: 87  TYRMQEIIDAHPPIEITPQPNYRP--EEEEENSILYRLKFGQLSLNKPSVEE 136

[48][TOP]
>UniRef100_O96236 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
           RepID=O96236_PLAF7
          Length = 1340

 Score = 79.7 bits (195), Expect = 9e-14
 Identities = 38/89 (42%), Positives = 58/89 (65%)
 Frame = +2

Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373
           ++PN+  I+ +D+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P I + P+ QY
Sbjct: 25  KNPNE-QITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQY 83

Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
              RD  D N    +KFGQL + +P + E
Sbjct: 84  RTDRDEND-NIIYSLKFGQLSLDRPFYDE 111

[49][TOP]
>UniRef100_B4R0H5 DNA-directed RNA polymerase n=1 Tax=Drosophila simulans
           RepID=B4R0H5_DROSI
          Length = 1176

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y+  +E YE+ N  +IS     E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 2   MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +   +  +KF Q+ +SKP   E
Sbjct: 62  DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101

[50][TOP]
>UniRef100_B4PTC0 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
           RepID=B4PTC0_DROYA
          Length = 1176

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y+  +E YE+ N  +IS     E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 2   MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +   +  +KF Q+ +SKP   E
Sbjct: 62  DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101

[51][TOP]
>UniRef100_B4N9I3 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
           RepID=B4N9I3_DROWI
          Length = 1176

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y+  +E YE+ N  +IS     E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 2   MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +   +  +KF Q+ +SKP   E
Sbjct: 62  DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101

[52][TOP]
>UniRef100_B3P0M0 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
           RepID=B3P0M0_DROER
          Length = 1176

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y+  +E YE+ N  +IS     E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 2   MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +   +  +KF Q+ +SKP   E
Sbjct: 62  DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101

[53][TOP]
>UniRef100_B3LYR3 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
           RepID=B3LYR3_DROAN
          Length = 1176

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y+  +E YE+ N  +IS     E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 2   MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +   +  +KF Q+ +SKP   E
Sbjct: 62  DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101

[54][TOP]
>UniRef100_P08266 DNA-directed RNA polymerase II subunit RPB2 n=2 Tax=melanogaster
           subgroup RepID=RPB2_DROME
          Length = 1176

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y+  +E YE+ N  +IS     E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 2   MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +   +  +KF Q+ +SKP   E
Sbjct: 62  DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101

[55][TOP]
>UniRef100_UPI0000D5712C PREDICTED: similar to AGAP003648-PA n=1 Tax=Tribolium castaneum
           RepID=UPI0000D5712C
          Length = 1175

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADISAE----DAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y   +++++D    +IS+E      W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 1   MYEQDEDQFDDEESEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +  ++ ++KF Q+ +SKP   E
Sbjct: 61  DSPQIDLQAEAQHTSGE--LENPSRYLLKFEQIYLSKPTHWE 100

[56][TOP]
>UniRef100_B2ADP9 DNA-directed RNA polymerase n=2 Tax=Podospora anserina
           RepID=B2ADP9_PODAN
          Length = 1278

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
 Frame = +2

Query: 146 DSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQR 325
           D  ++D  Y   DE   D ++A I+ ED W+VI+AYFD  GLV QQ+ S++EF S T+Q 
Sbjct: 16  DEFDDDNNYENGDELGVDQDEAAITPEDCWDVISAYFDMKGLVSQQIDSFDEFTSSTIQS 75

Query: 326 LVDESPDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460
           LVDE  D+ L   D   PG D   +    +  I FG + +SKP  TE
Sbjct: 76  LVDEYADLTL---DHPNPGDDQGRDIALRRYDIHFGNVMISKPTLTE 119

[57][TOP]
>UniRef100_UPI0001926137 PREDICTED: similar to predicted protein n=1 Tax=Hydra
           magnipapillata RepID=UPI0001926137
          Length = 1426

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 44/110 (40%), Positives = 68/110 (61%)
 Frame = +2

Query: 131 LYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVS 310
           +YD  D   +D  Y+  +E+  D    ++  E  W VI++YF+E GLVRQQL S++EF+ 
Sbjct: 1   MYDPIDE--DDDHYDNTEED--DEISKELWQEACWTVISSYFEEKGLVRQQLDSFDEFIQ 56

Query: 311 VTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +++QR+V+ESP I L  E QY    +  +E T+  +KF Q+ +SKP   E
Sbjct: 57  MSVQRIVEESPPIELQAETQYT--ENEIEEPTRYQLKFEQIYLSKPTHWE 104

[58][TOP]
>UniRef100_Q7QAK7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
           RepID=Q7QAK7_ANOGA
          Length = 1175

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
 Frame = +2

Query: 188 EYEDPNDA--DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           E EDP +   ++  E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  
Sbjct: 10  EEEDPEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTA 69

Query: 362 EDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           E Q+  G    +  T+ ++KF Q+ +SKP   E
Sbjct: 70  EAQHSSGE--IENPTRYLLKFDQIYLSKPTHWE 100

[59][TOP]
>UniRef100_Q10578 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Caenorhabditis
           elegans RepID=RPB2_CAEEL
          Length = 1193

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 11/109 (10%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDAD-------ISAED----AWEVINAYFDEHGLVRQQLQSYNEFVSV 313
           +Y+  DE   DP D D       ISAE      W VI+AYFDE GLVRQQL S++EFV +
Sbjct: 1   MYDDEDEMVNDPMDGDYIDDSDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQM 60

Query: 314 TMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            +QR+V++SP + L  E+Q++ G D  +   K  +KF Q+ +SKP   E
Sbjct: 61  NVQRIVEDSPPVELQSENQHL-GTDM-ENPAKFSLKFNQIYLSKPTHWE 107

[60][TOP]
>UniRef100_B4K015 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
           RepID=B4K015_DROGR
          Length = 1175

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y   +E +E+ N  +IS     E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 1   MYENEEENFEEENVEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +   +  +KF Q+ +SKP   E
Sbjct: 61  DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 100

[61][TOP]
>UniRef100_B4KDW5 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
           RepID=B4KDW5_DROMO
          Length = 1176

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 42/102 (41%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y+  +E +++ N  +IS     E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 2   MYDNEEENFDEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +   +  +KF Q+ +SKP   E
Sbjct: 62  DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101

[62][TOP]
>UniRef100_Q298X6 DNA-directed RNA polymerase n=2 Tax=pseudoobscura subgroup
           RepID=Q298X6_DROPS
          Length = 1176

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y+  +E +E+ N  +IS     E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 2   MYDNEEELFEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +   +  +KF Q+ +SKP   E
Sbjct: 62  DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101

[63][TOP]
>UniRef100_B3L0J5 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
           RepID=B3L0J5_PLAKH
          Length = 1371

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
 Frame = +2

Query: 179 VDEEYEDPNDAD--ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           +D   E+ +D +  I+ ED+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P + 
Sbjct: 58  IDAPLEEDHDEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPALE 117

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           + P+ QY    D   +N    +KFGQL + +P + E
Sbjct: 118 IRPQAQYRSEGD-EQKNVMYALKFGQLSLDRPFYDE 152

[64][TOP]
>UniRef100_B4M040 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
           RepID=B4M040_DROVI
          Length = 1176

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
 Frame = +2

Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334
           +Y   +E +++ N  +IS     E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+
Sbjct: 2   MYENEEENFDEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +SP I L  E Q+  G    +   +  +KF Q+ +SKP   E
Sbjct: 62  DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101

[65][TOP]
>UniRef100_Q6RYH8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Filobasidiella
           neoformans RepID=Q6RYH8_CRYNE
          Length = 1114

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 40/90 (44%), Positives = 56/90 (62%)
 Frame = +2

Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370
           Y+  +D  IS ED W V N++F+E GLVRQQL+S+NEF+  TMQ +VD+   + L    Q
Sbjct: 32  YDVDDDEPISQEDYWTVTNSFFEEKGLVRQQLESFNEFIETTMQEIVDDHSRLTLDQFTQ 91

Query: 371 YVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           Y     A DE  +  I FGQ+ +++ N TE
Sbjct: 92  YT--GVAGDETRRYEISFGQIYLARVNHTE 119

[66][TOP]
>UniRef100_Q6CAD6 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
           RepID=Q6CAD6_YARLI
          Length = 1229

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 4/95 (4%)
 Frame = +2

Query: 188 EYEDP----NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355
           EYEDP     D +I+AED W VI+++F+E GLV QQL S++EF+  T+Q LV E   ++L
Sbjct: 3   EYEDPYGYYEDTEITAEDCWTVISSFFNEKGLVSQQLDSFDEFIETTIQELVWEDRTLIL 62

Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
               Q+    D  ++N +  I FG++ +S+P  TE
Sbjct: 63  DQPAQHTTPND--NQNKRFEITFGKIYLSRPTMTE 95

[67][TOP]
>UniRef100_A1D971 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
           RepID=A1D971_NEOFI
          Length = 1255

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           +EE+ D  +  I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   + L  
Sbjct: 9   EEEFYDEMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66

Query: 362 EDQYVPGRDAPDENTKVV-----IKFGQLRVSKPNFTE 460
            DQ +P  D  DE+  VV     +KFG + +S+P+ TE
Sbjct: 67  -DQTLPPSD--DEDDPVVLRRYELKFGTVMLSRPSVTE 101

[68][TOP]
>UniRef100_C1ML14 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1ML14_9CHLO
          Length = 1172

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
 Frame = +2

Query: 197 DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRL-VDESPDIVLIPEDQY 373
           +  D +I  EDAW VI+++F+E GL RQQL S+NEF+   MQ + VDE     L PE Q+
Sbjct: 7   EEEDEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHAMQEIVVDEMSSFELEPEQQH 66

Query: 374 VPGRDAPDENTKVV-IKFGQLRVSKPNFTE 460
           VPG +      K   I F Q+ +SKP  TE
Sbjct: 67  VPGEEGEGGEKKTYKISFKQIYLSKPMVTE 96

[69][TOP]
>UniRef100_A7ATA0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis
           RepID=A7ATA0_BABBO
          Length = 1207

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 34/75 (45%), Positives = 52/75 (69%)
 Frame = +2

Query: 224 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 403
           ED+W+VI ++F+ HGLV QQ++S+N+FV+  MQ  +D+ P I + P+ QY P  D  + N
Sbjct: 59  EDSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETIDQHPPIEITPQPQYHP-EDERENN 117

Query: 404 TKVVIKFGQLRVSKP 448
               +KFGQL ++KP
Sbjct: 118 IVYKLKFGQLSLNKP 132

[70][TOP]
>UniRef100_UPI000155BCC7 PREDICTED: similar to RNA polymerase II 140 kDa subunit, partial
           n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BCC7
          Length = 951

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 40/97 (41%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
 Frame = +2

Query: 179 VDEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           VD +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I
Sbjct: 6   VDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65

Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 66  DLQAEAQHATGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[71][TOP]
>UniRef100_B3S2W9 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
           RepID=B3S2W9_TRIAD
          Length = 1196

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 39/98 (39%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
 Frame = +2

Query: 170 YNGVDEEYEDPN-DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPD 346
           Y+  D+  +D   + D+  E  W VINAYF+E GLVRQQL S++EF+ +++QR+V++SP 
Sbjct: 7   YDLTDQPIDDDEIETDLWQEACWVVINAYFNEKGLVRQQLDSFDEFIQMSVQRIVEDSPQ 66

Query: 347 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           I +  E Q+    +   ++ +  +KF Q+ +SKP F E
Sbjct: 67  IDIQGETQHHSSEE--QQSVRYQLKFDQIYLSKPTFWE 102

[72][TOP]
>UniRef100_Q2VA54 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
           RepID=Q2VA54_PHANO
          Length = 1262

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E+YED    +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L   
Sbjct: 10  EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69

Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460
             Y P  D+ P    +  IKFG++ +++P  TE
Sbjct: 70  TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102

[73][TOP]
>UniRef100_Q1HDK3 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria sp. S-93-48
           RepID=Q1HDK3_9PLEO
          Length = 1262

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E+YED    +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L   
Sbjct: 10  EDYEDEEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69

Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460
             Y P  D+ P    +  IKFG++ +++P  TE
Sbjct: 70  TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102

[74][TOP]
>UniRef100_Q1HDK2 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
           triticae RepID=Q1HDK2_9PLEO
          Length = 1262

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E+YED    +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L   
Sbjct: 10  EDYEDEEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69

Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460
             Y P  D+ P    +  IKFG++ +++P  TE
Sbjct: 70  TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102

[75][TOP]
>UniRef100_Q1HDK1 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
           triticae RepID=Q1HDK1_9PLEO
          Length = 1262

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E+YED    +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L   
Sbjct: 10  EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69

Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460
             Y P  D+ P    +  IKFG++ +++P  TE
Sbjct: 70  TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102

[76][TOP]
>UniRef100_Q1HDJ9 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
           triticae RepID=Q1HDJ9_9PLEO
          Length = 1262

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E+YED    +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L   
Sbjct: 10  EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69

Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460
             Y P  D+ P    +  IKFG++ +++P  TE
Sbjct: 70  TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102

[77][TOP]
>UniRef100_Q1HDJ8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
           RepID=Q1HDJ8_PHANO
          Length = 1262

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E+YED    +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L   
Sbjct: 10  EDYEDEEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69

Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460
             Y P  D+ P    +  IKFG++ +++P  TE
Sbjct: 70  TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102

[78][TOP]
>UniRef100_Q1HDI7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
           avenaria RepID=Q1HDI7_9PLEO
          Length = 1262

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E+YED    +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L   
Sbjct: 10  EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69

Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460
             Y P  D+ P    +  IKFG++ +++P  TE
Sbjct: 70  TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102

[79][TOP]
>UniRef100_Q1HDI5 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
           avenaria RepID=Q1HDI5_9PLEO
          Length = 1262

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E+YED    +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L   
Sbjct: 10  EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69

Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460
             Y P  D+ P    +  IKFG++ +++P  TE
Sbjct: 70  TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102

[80][TOP]
>UniRef100_Q0U9V8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0U9V8_PHANO
          Length = 1252

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E+YED    +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L   
Sbjct: 10  EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69

Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460
             Y P  D+ P    +  IKFG++ +++P  TE
Sbjct: 70  TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102

[81][TOP]
>UniRef100_B6HM08 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum
           Wisconsin 54-1255 RepID=B6HM08_PENCW
          Length = 1255

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           +E++ D  D  I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   +VL  
Sbjct: 9   EEDFYDEADEGITSEDCWTVISSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVL-- 66

Query: 362 EDQYVPGRDAPDENTKVVI-----KFGQLRVSKPNFTE 460
            DQ +P   + DE   +V+     KFG + +S+P+ TE
Sbjct: 67  -DQTLP--PSEDEIEPIVVRRYELKFGTVMLSRPSVTE 101

[82][TOP]
>UniRef100_A2QYC2 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
           RepID=A2QYC2_ASPNC
          Length = 1256

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 43/98 (43%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           ++EY D  D  I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   + L  
Sbjct: 9   EDEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66

Query: 362 EDQYVPGRDAPDENTKVVI-----KFGQLRVSKPNFTE 460
            DQ +P   + DE   VV+     KFG + +S+P+ TE
Sbjct: 67  -DQTLP--PSEDEVDPVVVRRYELKFGTVMLSRPSVTE 101

[83][TOP]
>UniRef100_P90631 RNA polymerase II second largest subunit (Fragment) n=1
           Tax=Moneuplotes crassus RepID=P90631_EUPCR
          Length = 205

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 10/98 (10%)
 Frame = +2

Query: 197 DP-NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373
           DP N  +I+ EDAW +I AYF +HGLV QQ+ S++ F+S T+Q +V E+  + ++PE QY
Sbjct: 2   DPDNSKEITQEDAWALIKAYFQQHGLVSQQISSFDRFLSYTIQDIVAENSIMSIVPEKQY 61

Query: 374 VP--------GRDAPDENTKVVIKFGQLRVS-KPNFTE 460
            P        G +  D + +  I+ GQ++V+ KP F E
Sbjct: 62  APGVRLYLTLGNENQDRDLRYEIELGQVKVNEKPRFKE 99

[84][TOP]
>UniRef100_A9BK63 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK63_9CRYP
          Length = 1222

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 36/88 (40%), Positives = 56/88 (63%)
 Frame = +2

Query: 197 DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYV 376
           D ND  I  +D W ++ ++F E+ LVRQQL S+NEF+  TMQ ++D+ P IV+  E    
Sbjct: 4   DKNDEIIKQDDMWIILESFFKENNLVRQQLDSFNEFIQNTMQDIIDDIPPIVIKTEFDKF 63

Query: 377 PGRDAPDENTKVVIKFGQLRVSKPNFTE 460
              +   ++ K++++FGQL +SKP F E
Sbjct: 64  KSSET-KKSLKLILRFGQLHLSKPTFIE 90

[85][TOP]
>UniRef100_A1CG49 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
           RepID=A1CG49_ASPCL
          Length = 1257

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           +EE+ D  +  I++ED W VI+++FD  GLV QQL S++EFVS TMQ LV+E   + L  
Sbjct: 9   EEEFYDDMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFVSSTMQELVEEQGQVTL-- 66

Query: 362 EDQYVPGRDAPDENTKVV-----IKFGQLRVSKPNFTE 460
            DQ +P  D  DE   VV     +KFG + +S+P+ TE
Sbjct: 67  -DQTLPPAD--DEVDPVVLRRYELKFGTVMLSRPSVTE 101

[86][TOP]
>UniRef100_UPI00006A01AA DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA
           polymerase II subunit B2) (DNA-directed RNA polymerase
           II subunit B) (RNA polymerase II subunit 2)
           (DNA-directed RNA polymerase II 140 kDa polypeptide).
           n=1 Tax=Xenopus (Silurana) tropicalis
           RepID=UPI00006A01AA
          Length = 927

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 39/97 (40%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
 Frame = +2

Query: 179 VDEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           +D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I
Sbjct: 6   LDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65

Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 66  DLQAEAQHTTGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[87][TOP]
>UniRef100_UPI000194C2A3 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
           n=1 Tax=Taeniopygia guttata RepID=UPI000194C2A3
          Length = 1174

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[88][TOP]
>UniRef100_UPI0001795E58 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB2
           (RNA polymerase II subunit B2) (DNA-directed RNA
           polymerase II subunit B) (RNA polymerase II subunit 2)
           (DNA-directed RNA polymerase II 140 kDa polypeptide) n=1
           Tax=Equus caballus RepID=UPI0001795E58
          Length = 1174

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[89][TOP]
>UniRef100_UPI0000F2D75F PREDICTED: similar to RNA polymerase II 140 kDa subunit n=1
           Tax=Monodelphis domestica RepID=UPI0000F2D75F
          Length = 1174

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHATGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[90][TOP]
>UniRef100_P30876 DNA-directed RNA polymerase II subunit RPB2 n=2 Tax=Catarrhini
           RepID=RPB2_HUMAN
          Length = 1174

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[91][TOP]
>UniRef100_UPI00005A2A5C PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           16 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5C
          Length = 1173

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[92][TOP]
>UniRef100_UPI00005A2A5B PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           15 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5B
          Length = 1179

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[93][TOP]
>UniRef100_UPI00005A2A5A PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           14 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5A
          Length = 1175

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[94][TOP]
>UniRef100_UPI00005A2A59 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           13 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A59
          Length = 1180

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[95][TOP]
>UniRef100_UPI00005A2A58 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           12 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A58
          Length = 1174

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[96][TOP]
>UniRef100_UPI00005A2A57 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           11 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A57
          Length = 1180

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[97][TOP]
>UniRef100_UPI00005A2A56 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           10 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A56
          Length = 1166

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[98][TOP]
>UniRef100_UPI00005A2A55 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           9 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A55
          Length = 1182

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[99][TOP]
>UniRef100_UPI00005A2A54 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           8 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A54
          Length = 1173

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[100][TOP]
>UniRef100_UPI00005A2A53 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           7 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A53
          Length = 1113

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[101][TOP]
>UniRef100_UPI00005A2A52 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           6 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A52
          Length = 1162

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[102][TOP]
>UniRef100_UPI00005A2A51 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           5 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A51
          Length = 932

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[103][TOP]
>UniRef100_UPI00005A2A4F PREDICTED: similar to polymerase (RNA) II (DNA directed)
           polypeptide B isoform 3 n=1 Tax=Canis lupus familiaris
           RepID=UPI00005A2A4F
          Length = 193

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[104][TOP]
>UniRef100_UPI0000EB23D9 DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA
           polymerase II subunit B2) (DNA-directed RNA polymerase
           II subunit B) (RNA polymerase II subunit 2)
           (DNA-directed RNA polymerase II 140 kDa polypeptide).
           n=1 Tax=Canis lupus familiaris RepID=UPI0000EB23D9
          Length = 1176

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[105][TOP]
>UniRef100_UPI0000F3357E UPI0000F3357E related cluster n=1 Tax=Bos taurus
           RepID=UPI0000F3357E
          Length = 1177

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 8   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 67

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 68  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 101

[106][TOP]
>UniRef100_UPI0000ECC4A8 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1
           Tax=Gallus gallus RepID=UPI0000ECC4A8
          Length = 1176

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 8   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 67

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 68  LQAEAQHATGE--VEEPPRYLLKFEQIYLSKPTHWE 101

[107][TOP]
>UniRef100_UPI00003AD7E4 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1
           Tax=Gallus gallus RepID=UPI00003AD7E4
          Length = 1174

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHATGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[108][TOP]
>UniRef100_Q6PA46 MGC68569 protein n=1 Tax=Xenopus laevis RepID=Q6PA46_XENLA
          Length = 949

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHTTGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[109][TOP]
>UniRef100_Q5ZMN9 DNA-directed RNA polymerase n=1 Tax=Gallus gallus
           RepID=Q5ZMN9_CHICK
          Length = 1174

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEARWIVISSYFDEEGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHATGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[110][TOP]
>UniRef100_A5PJW8 DNA-directed RNA polymerase n=1 Tax=Bos taurus RepID=A5PJW8_BOVIN
          Length = 1174

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[111][TOP]
>UniRef100_A8MW88 DNA-directed RNA polymerase (Fragment) n=1 Tax=Homo sapiens
           RepID=A8MW88_HUMAN
          Length = 1173

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 6   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 65

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 66  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 99

[112][TOP]
>UniRef100_A7E6G0 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980
           UF-70 RepID=A7E6G0_SCLS1
          Length = 1267

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
 Frame = +2

Query: 188 EYED--PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           EY+D    DA I+AED W VI+++FD  GLV QQ+ S++EFV  TMQ LV+E+  + L  
Sbjct: 9   EYDDFGEEDAGITAEDCWTVISSFFDAKGLVSQQIDSFDEFVQTTMQELVEENSQLTL-- 66

Query: 362 EDQYVP--GRDAPDENTKVVIKFGQLRVSKPNFTE 460
            DQ  P    D P    +  IKFG + +S+P  TE
Sbjct: 67  -DQNNPPSSNDNPIALRRYEIKFGTIMLSRPAMTE 100

[113][TOP]
>UniRef100_Q8CFI7 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Mus musculus
           RepID=RPB2_MOUSE
          Length = 1174

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[114][TOP]
>UniRef100_UPI0001B09250 DNA directed RNA polymerase II polypeptide B n=1 Tax=Danio rerio
           RepID=UPI0001B09250
          Length = 1174

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHTSGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[115][TOP]
>UniRef100_Q6DRH1 RNA polymerase II subunit B (Fragment) n=1 Tax=Danio rerio
           RepID=Q6DRH1_DANRE
          Length = 562

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHTSGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[116][TOP]
>UniRef100_Q504C7 Polr2b protein n=1 Tax=Danio rerio RepID=Q504C7_DANRE
          Length = 366

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I 
Sbjct: 7   DIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           L  E Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 67  LQAEAQHTSGE--VEEPPRYLLKFEQIYLSKPTHWE 100

[117][TOP]
>UniRef100_B4DHJ3 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4DHJ3_HUMAN
          Length = 1167

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 38/92 (41%), Positives = 60/92 (65%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           +E +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E
Sbjct: 4   DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63

Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 64  AQHASGE--VEEPPRYLLKFEQIYLSKPTHRE 93

[118][TOP]
>UniRef100_Q0CWW4 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
           RepID=Q0CWW4_ASPTN
          Length = 1256

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           ++E+ D  D  I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   + L  
Sbjct: 9   EDEFYDEMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66

Query: 362 EDQYVPGRDAPDENTKVV-----IKFGQLRVSKPNFTE 460
            DQ +P  +  DE   +V     +KFG + +S+P+ TE
Sbjct: 67  -DQTLPPNE--DEVDPIVLRRYELKFGTVMLSRPSVTE 101

[119][TOP]
>UniRef100_B0YC08 DNA-directed RNA polymerase n=3 Tax=Aspergillus fumigatus
           RepID=B0YC08_ASPFC
          Length = 1255

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           ++E+ D  +  I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   + L  
Sbjct: 9   EDEFYDEMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66

Query: 362 EDQYVPGRDAPDENTKVV-----IKFGQLRVSKPNFTE 460
            DQ +P   + DE+  VV     +KFG + +S+P+ TE
Sbjct: 67  -DQTLP--PSEDEDDPVVLRRYELKFGTVMLSRPSVTE 101

[120][TOP]
>UniRef100_C0HA74 DNA-directed RNA polymerase n=1 Tax=Salmo salar RepID=C0HA74_SALSA
          Length = 1174

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 38/92 (41%), Positives = 60/92 (65%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           +E ED    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E
Sbjct: 11  DEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 70

Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            Q+  G    ++  + ++KF Q+ +SKP   E
Sbjct: 71  AQHTSGE--VEDPPRYLLKFEQIYLSKPTHWE 100

[121][TOP]
>UniRef100_C9J2Y9 Putative uncharacterized protein POLR2B n=1 Tax=Homo sapiens
           RepID=C9J2Y9_HUMAN
          Length = 100

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 38/92 (41%), Positives = 60/92 (65%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           +E +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E
Sbjct: 4   DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63

Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            Q+  G    +E  + ++KF Q+ +SKP   E
Sbjct: 64  AQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 93

[122][TOP]
>UniRef100_A6S7C1 DNA-directed RNA polymerase n=2 Tax=Botryotinia fuckeliana
           RepID=A6S7C1_BOTFB
          Length = 1207

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
 Frame = +2

Query: 188 EYED--PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           EY+D    DA I+AED W VI+++F+  GLV QQL S++EFV  TMQ LV+E+  + L  
Sbjct: 9   EYDDYGEEDAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTL-- 66

Query: 362 EDQYVP--GRDAPDENTKVVIKFGQLRVSKPNFTE 460
            DQ  P    D P    +  IKFG + +S+P  TE
Sbjct: 67  -DQNNPPSSHDNPIALRRYEIKFGTIMLSRPAMTE 100

[123][TOP]
>UniRef100_Q872W7 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
           RepID=Q872W7_NEUCR
          Length = 1287

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
 Frame = +2

Query: 134 YDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSV 313
           YD  D+      ++  D+   DPN   I+ ED+WEVI++YFD  GLV QQ+ S+NEF + 
Sbjct: 19  YDNDDNYENLSTFDDEDDG-SDPNA--ITPEDSWEVISSYFDLKGLVSQQIDSFNEFTTD 75

Query: 314 TMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIK-----FGQLRVSKPNFTE 460
           T+Q L+DE  D+ L   D   PG    DE  +++++     FG++ +S+P  TE
Sbjct: 76  TVQSLIDEYADLTL---DHPSPG---DDEGREIILRRYDVHFGEIIISRPTLTE 123

[124][TOP]
>UniRef100_B8MU25 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC
           10500 RepID=B8MU25_TALSN
          Length = 1256

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           DE YED  +  I++ED W VI++YFD  GLV QQL S++EF+S TMQ LV+E   + +  
Sbjct: 10  DEYYEDEEEG-ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTI-- 66

Query: 362 EDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460
           +    P  D  D     +  IK+G + +++P+F+E
Sbjct: 67  DQTITPNEDEIDPVVIRRYEIKYGTIMLARPSFSE 101

[125][TOP]
>UniRef100_B6QUV1 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC
           18224 RepID=B6QUV1_PENMQ
          Length = 1254

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           DE YED  +  I++ED W VI++YFD  GLV QQL S++EF+S TMQ LV+E   + +  
Sbjct: 10  DEYYEDEEEG-ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTI-- 66

Query: 362 EDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460
           +    P  D  D     +  IK+G + +++P+F+E
Sbjct: 67  DQTITPNEDEIDPVVIRRYEIKYGTIMLARPSFSE 101

[126][TOP]
>UniRef100_Q6QN96 DNA-directed RNA polymerase n=1 Tax=Cochliobolus heterostrophus
           RepID=Q6QN96_COCHE
          Length = 1208

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
 Frame = +2

Query: 158 EDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337
           EDG+     ++YED  D  +  ED W VI+++FD  GLV QQL SY+EF   T+Q +V E
Sbjct: 8   EDGM-----DDYEDEEDDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKE 62

Query: 338 SPDIVLIPEDQYVPGR-DAPDENTKVVIKFGQLRVSKPNFTE 460
           +  ++L     Y P   D P    +  IKFG++ +++P  TE
Sbjct: 63  NGSVILEQNTPYNPDEDDNPIIKRRYEIKFGRVYLARPTHTE 104

[127][TOP]
>UniRef100_C8VK81 DNA-directed RNA polymerase (EC 2.7.7.6)
           [Source:UniProtKB/TrEMBL;Acc:Q9UV95] n=2 Tax=Emericella
           nidulans RepID=C8VK81_EMENI
          Length = 1252

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           +EEY D  D  I++ED W VI+++FD  GLV QQL S++EF+S T+Q LV+E   + L  
Sbjct: 9   EEEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTL-- 66

Query: 362 EDQYVPGRDAPDENTKVVI-----KFGQLRVSKP 448
            DQ +P   + DE   VV+     KFG + +S+P
Sbjct: 67  -DQTIP--PSEDEVDPVVVRRYELKFGTVMLSRP 97

[128][TOP]
>UniRef100_B8NK59 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=B8NK59_ASPFN
          Length = 1254

 Score = 73.2 bits (178), Expect = 9e-12
 Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           ++E+ D  +  I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   + L  
Sbjct: 9   EDEFYDDMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66

Query: 362 EDQYVPGRDAPDEN-------TKVVIKFGQLRVSKPNFTE 460
            DQ +P    PDE+        +  +KFG + +S+P+ TE
Sbjct: 67  -DQTLP----PDEDEVDPVVVRRYELKFGTVMLSRPSVTE 101

[129][TOP]
>UniRef100_UPI000186D6F3 DNA-directed RNA polymerase II 135 kDa polypeptide, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186D6F3
          Length = 1175

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
 Frame = +2

Query: 182 DEEYEDPNDA-----DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPD 346
           +++YE+  DA     ++  E  W VIN+YFDE GLVRQQL S++EF+ +++QR+V+++P 
Sbjct: 5   EDQYENDEDAGEISSELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPI 64

Query: 347 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           I L  E Q+  G    +     ++KF Q+ +SKP   E
Sbjct: 65  IDLQAEAQHASGE--IENPPHYLLKFEQIYLSKPTHWE 100

[130][TOP]
>UniRef100_A8Q7K3 DNA-directed RNA polymerase n=1 Tax=Brugia malayi
           RepID=A8Q7K3_BRUMA
          Length = 1185

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 42/100 (42%), Positives = 61/100 (61%), Gaps = 7/100 (7%)
 Frame = +2

Query: 182 DEEYEDP---NDADISAED----AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340
           D+E E+     D +IS+E      W VI+AYFDE GLVRQQL S++EF+ + +QR+V++S
Sbjct: 5   DDETEEALFEEDEEISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDS 64

Query: 341 PDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           P + L  E Q+  G    +   K  +KF Q+ +SKP   E
Sbjct: 65  PPVELQSEVQHFSG--DVENPIKFALKFDQIYLSKPTHWE 102

[131][TOP]
>UniRef100_A5DVP4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
           RepID=A5DVP4_LODEL
          Length = 1238

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 7/100 (7%)
 Frame = +2

Query: 182 DEEYEDPN--DADISA-----EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340
           D+E +DP   DAD+ A     ED W VI+++F E GLV QQL S++EF+  T+Q LV E 
Sbjct: 4   DQEMDDPYMYDADVEAQNITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWED 63

Query: 341 PDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
             ++L    Q+   +D   +N +  I FG++ +SKP  TE
Sbjct: 64  SHLILDQPAQHTSEKD--HDNKRYEINFGKIYISKPTQTE 101

[132][TOP]
>UniRef100_Q753Q4 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Eremothecium
           gossypii RepID=RPB2_ASHGO
          Length = 1222

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 37/89 (41%), Positives = 59/89 (66%)
 Frame = +2

Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373
           +D  DA I+AED+W VI+A+F E GLV QQL S+N+F++ T+Q L+ E   ++L    Q+
Sbjct: 14  DDDEDAPITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQH 73

Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
               +A + + K  I FG++ ++KP+ TE
Sbjct: 74  T--TEADNISRKYEISFGKIYLAKPSMTE 100

[133][TOP]
>UniRef100_A7SHD8 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
           RepID=A7SHD8_NEMVE
          Length = 1182

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 38/95 (40%), Positives = 60/95 (63%)
 Frame = +2

Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355
           G  E+  +    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP+I L
Sbjct: 12  GYGEDEGEDITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPEIDL 71

Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
             E Q++      +   + V+KF Q+ +SKP   E
Sbjct: 72  QAESQHM--TSDTEIPARFVLKFEQIYLSKPTHWE 104

[134][TOP]
>UniRef100_C5FJF0 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
           RepID=C5FJF0_NANOT
          Length = 1258

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
 Frame = +2

Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361
           D+ Y +  +  I++ED W VI+A+F+  GLV QQL S++EF+S TMQ LV+E   + L  
Sbjct: 9   DDVYYEAEEG-ITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL-- 65

Query: 362 EDQYVPGRDAPDENTKVV-----IKFGQLRVSKPNFTE 460
            DQ VP  D  DE   VV     +KFG + +++P+ TE
Sbjct: 66  -DQTVPPGD--DEQDPVVLRRYELKFGTVMLARPSMTE 100

[135][TOP]
>UniRef100_C4JKI6 DNA-directed RNA polymerase II 138 kDa polypeptide n=1
           Tax=Uncinocarpus reesii 1704 RepID=C4JKI6_UNCRE
          Length = 884

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 10/102 (9%)
 Frame = +2

Query: 185 EEYEDPNDAD--------ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340
           EEYED    D        I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E 
Sbjct: 2   EEYEDEYGEDGYYEAEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQ 61

Query: 341 PDIVLIPEDQYVPGRDAPDE--NTKVVIKFGQLRVSKPNFTE 460
             + L  +    P  D PD     +  +KFG + +++P+ TE
Sbjct: 62  GQVTL--DQTIAPEEDDPDPVLVRRYELKFGTVMLARPSMTE 101

[136][TOP]
>UniRef100_B7QNH8 DNA-directed RNA polymerase n=1 Tax=Ixodes scapularis
           RepID=B7QNH8_IXOSC
          Length = 1142

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 37/92 (40%), Positives = 58/92 (63%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E+  +    D+  E  W VI+AYFDE GLVRQQL S++EF+ +++QR+V+++P I L  E
Sbjct: 11  EDESEEITPDLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAE 70

Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            Q+  G    +   + ++KF Q+ +SKP   E
Sbjct: 71  AQHASGE--IENPPRYLLKFEQIYLSKPTHWE 100

[137][TOP]
>UniRef100_A8XS50 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae
           RepID=A8XS50_CAEBR
          Length = 1215

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 19/124 (15%)
 Frame = +2

Query: 146 DSGNEDGVYNGVDEEYEDPNDADISA----EDAWEVINAYFDE---------------HG 268
           D G +D   +G DEEY D   A+IS     E  W VI+AYFDE                G
Sbjct: 12  DDGMQD---DGNDEEYSDET-AEISPDAWQEACWVVISAYFDEKVNFGFFLIKTICMFQG 67

Query: 269 LVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKP 448
           LVRQQL S++EFV + +QR+V++SP + L  E+Q++ G D  +   K  +KF Q+ +SKP
Sbjct: 68  LVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHL-GNDM-ENPAKFSLKFNQIYLSKP 125

Query: 449 NFTE 460
              E
Sbjct: 126 THWE 129

[138][TOP]
>UniRef100_C9SGY6 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Verticillium
           albo-atrum VaMs.102 RepID=C9SGY6_9PEZI
          Length = 1260

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
 Frame = +2

Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319
           M+   +E+  Y+G +E+     DA I+ ED W VI+++FD  GLV QQ+ S++EF + T+
Sbjct: 1   MATEYDEEFDYDGYEED-----DASITPEDCWTVISSFFDSKGLVSQQVDSFDEFTTSTV 55

Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460
           Q L+DE   I L   DQ  P  D+       +  +KFG + VS+P+ TE
Sbjct: 56  QELIDEYSHITL---DQPNPASDSDRAIALRRYEVKFGTVMVSRPSITE 101

[139][TOP]
>UniRef100_C5PAW2 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735
           delta SOWgp RepID=C5PAW2_COCP7
          Length = 1258

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
 Frame = +2

Query: 131 LYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVS 310
           + +  D   EDG Y           +  I++ED W VI+++F+  GLV QQL S++EF+S
Sbjct: 1   MQEYEDEYGEDGYYEA---------EEGITSEDCWTVISSFFESKGLVSQQLDSFDEFIS 51

Query: 311 VTMQRLVDESPDIVLIPEDQYVPGRDAPDE--NTKVVIKFGQLRVSKPNFTE 460
            TMQ LV+E   + L  +    P  D PD     +  +KFG + +++P+ TE
Sbjct: 52  TTMQELVEEQGQVTL--DQTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTE 101

[140][TOP]
>UniRef100_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4 Tax=Saccharomyces
           cerevisiae RepID=RPB2_YEAST
          Length = 1224

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 42/107 (39%), Positives = 63/107 (58%)
 Frame = +2

Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319
           MSD  N +  Y+     +ED + A I+AED+W VI+A+F E GLV QQL S+N+FV  T+
Sbjct: 1   MSDLANSEKYYDEDPYGFEDES-APITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL 59

Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           Q ++ E   ++L    Q+    D  + + K  I FG++ V+KP   E
Sbjct: 60  QDIICEDSTLILEQLAQHTTESD--NISRKYEISFGKIYVTKPMVNE 104

[141][TOP]
>UniRef100_UPI0001865901 hypothetical protein BRAFLDRAFT_125505 n=1 Tax=Branchiostoma
           floridae RepID=UPI0001865901
          Length = 1176

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 7/101 (6%)
 Frame = +2

Query: 179 VDEEY----EDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337
           +DEEY    ED  D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V++
Sbjct: 4   IDEEYTYQEEDETDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 63

Query: 338 SPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           SP I L  E Q++      +   + ++ F Q+ +SKP   E
Sbjct: 64  SPQIDLQAEAQHLTME--AEVPPRYLLNFEQIYLSKPTHWE 102

[142][TOP]
>UniRef100_UPI0000586387 PREDICTED: similar to RNA polymerase II subunit B, partial n=1
           Tax=Strongylocentrotus purpuratus RepID=UPI0000586387
          Length = 300

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 38/92 (41%), Positives = 58/92 (63%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           EE  D    D   E  W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP + L  E
Sbjct: 11  EEETDDLTPDQWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAVDLQAE 70

Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            Q++      +  T+ ++KF Q+ +SKP   E
Sbjct: 71  AQHMTTEQ--EVPTRYLLKFEQIYLSKPTHWE 100

[143][TOP]
>UniRef100_C3Y5U9 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
           RepID=C3Y5U9_BRAFL
          Length = 1104

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 7/101 (6%)
 Frame = +2

Query: 179 VDEEY----EDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337
           +DEEY    ED  D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V++
Sbjct: 4   IDEEYTYQEEDETDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 63

Query: 338 SPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           SP I L  E Q++      +   + ++ F Q+ +SKP   E
Sbjct: 64  SPQIDLQAEAQHLTME--AEVPPRYLLNFEQIYLSKPTHWE 102

[144][TOP]
>UniRef100_Q6CWA5 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
           RepID=Q6CWA5_KLULA
          Length = 1221

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 37/88 (42%), Positives = 57/88 (64%)
 Frame = +2

Query: 197 DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYV 376
           D  +A ISAED+W VI+A+F E GLV QQL S+N+F++ T+Q L+ E   ++L    Q+ 
Sbjct: 13  DEEEAAISAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHT 72

Query: 377 PGRDAPDENTKVVIKFGQLRVSKPNFTE 460
              D  + + K  I FG++ ++KP+ TE
Sbjct: 73  TETD--NISRKYEISFGKIYLAKPSMTE 98

[145][TOP]
>UniRef100_Q5A8Y5 DNA-directed RNA polymerase n=2 Tax=Candida albicans
           RepID=Q5A8Y5_CANAL
          Length = 1234

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
 Frame = +2

Query: 182 DEEYEDPNDAD-----ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPD 346
           DE   DP   D     I+ ED W VI ++F E GLV QQL S++EFV  ++Q LV E   
Sbjct: 4   DESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSH 63

Query: 347 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           ++L    Q+   +D   EN +  I FG++ +SKP+ TE
Sbjct: 64  LILDQPAQHTSEKD--HENKRYEITFGKIYISKPSQTE 99

[146][TOP]
>UniRef100_B9W6V2 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
           RepID=B9W6V2_CANDC
          Length = 1234

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
 Frame = +2

Query: 182 DEEYEDPNDAD-----ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPD 346
           DE   DP   D     I+ ED W VI ++F E GLV QQL S++EFV  ++Q LV E   
Sbjct: 4   DESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSH 63

Query: 347 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           ++L    Q+   +D   EN +  I FG++ +SKP+ TE
Sbjct: 64  LILDQPAQHTSEKD--HENKRYEITFGKIYISKPSQTE 99

[147][TOP]
>UniRef100_A4QV56 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
           RepID=A4QV56_MAGGR
          Length = 1276

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 39/107 (36%), Positives = 58/107 (54%)
 Frame = +2

Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319
           M++ G  D   +    +Y+  ND +I+AED W VI++YFDE GLV QQ+ SYNEF + T+
Sbjct: 1   MAEYGEMDEYADYEAGDYDAENDDEITAEDCWNVISSYFDEKGLVSQQIDSYNEFTTSTI 60

Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           Q +VDE   + L   +        P    +  I  G + V++P   E
Sbjct: 61  QGIVDEYSVLTLDNPNPPDTFEGKPIRLRRYEIMLGNILVTQPTVKE 107

[148][TOP]
>UniRef100_A3GFG5 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
           RepID=A3GFG5_PICST
          Length = 1232

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 37/90 (41%), Positives = 54/90 (60%)
 Frame = +2

Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370
           Y+D +   I+ ED W VI+++F E GLV QQL S++EF+  T+Q LV E   ++L    Q
Sbjct: 10  YDDGDAQSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQ 69

Query: 371 YVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +    D   EN +  I FG++ +SKP  TE
Sbjct: 70  HTSEDD--HENRRYEITFGKIYISKPMQTE 97

[149][TOP]
>UniRef100_A5DHT2 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Pichia
           guilliermondii RepID=RPB2_PICGU
          Length = 1236

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 40/107 (37%), Positives = 60/107 (56%)
 Frame = +2

Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319
           MSD  ++  +Y        D + + I+ ED W VI+++F E GLV QQL S++EF+  T+
Sbjct: 1   MSDQASDPYMY--------DDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTI 52

Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           Q LV E   ++L    Q+    D   EN +  I FG++ +SKP  TE
Sbjct: 53  QELVWEDSRLILDQPAQHTSEED--HENRRYEITFGKIYISKPTQTE 97

[150][TOP]
>UniRef100_B6K5Q5 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
           yFS275 RepID=B6K5Q5_SCHJY
          Length = 1210

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
 Frame = +2

Query: 191 YEDPN-DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPED 367
           YED   +  ++ ED W VI++YF+E+ L RQQL S++EFV  TMQ +VD+   + L   D
Sbjct: 3   YEDYQYNETLTQEDCWTVISSYFEENSLARQQLSSFDEFVQNTMQEIVDDDSTLTL---D 59

Query: 368 QYVPGRDAPDENT-KVVIKFGQLRVSKPNFTE 460
           QY     A  + T +  I FGQ+ +S+P  TE
Sbjct: 60  QYAQHTGAQGDYTRRYEINFGQIYLSRPTMTE 91

[151][TOP]
>UniRef100_UPI000180B7B7 PREDICTED: similar to POLR2B protein n=1 Tax=Ciona intestinalis
           RepID=UPI000180B7B7
          Length = 1173

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 12/100 (12%)
 Frame = +2

Query: 197 DPNDADISAED------------AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340
           D +D D+ AE+             W VI++YFDE GLVRQQL S++EF+ +++QR+V+++
Sbjct: 3   DDDDLDLQAEEEEEISPEMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDA 62

Query: 341 PDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           P I L  E Q+     +    TK ++KF Q+ +SKP   E
Sbjct: 63  PIIELQAESQHTSTEVSVP--TKYLLKFEQIYLSKPTHWE 100

[152][TOP]
>UniRef100_UPI000151B416 hypothetical protein PGUG_02833 n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151B416
          Length = 1291

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 40/107 (37%), Positives = 59/107 (55%)
 Frame = +2

Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319
           MSD  ++  +Y        D +   I+ ED W VI+++F E GLV QQL S++EF+  T+
Sbjct: 56  MSDQASDPYMY--------DDDSLSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTI 107

Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           Q LV E   ++L    Q+    D   EN +  I FG++ +SKP  TE
Sbjct: 108 QELVWEDSRLILDQPAQHTSEED--HENRRYEITFGKIYISKPTQTE 152

[153][TOP]
>UniRef100_C5DLS0 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS
           6340 RepID=C5DLS0_LACTC
          Length = 1220

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 37/90 (41%), Positives = 60/90 (66%)
 Frame = +2

Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370
           YED ++A I+AED+W VI+A+F E GLV QQL S+N+F++ T+Q  + E   ++L    Q
Sbjct: 14  YED-DEASITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDSIVEDSTLILEQLAQ 72

Query: 371 YVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +    +A + + K  I FG++ ++KP+ TE
Sbjct: 73  HT--TEADNISRKYEISFGKIYLAKPSMTE 100

[154][TOP]
>UniRef100_B2W4R0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
           Pt-1C-BFP RepID=B2W4R0_PYRTR
          Length = 1208

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           +EYED  D  +  ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L   
Sbjct: 13  DEYEDEEDR-VLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQN 71

Query: 365 DQYVPG-RDAPDENTKVVIKFGQLRVSKPNFTE 460
             Y P   D P    +  +KFG++ +++P  TE
Sbjct: 72  QPYNPDEEDNPIIKRRYEMKFGRVYLARPTHTE 104

[155][TOP]
>UniRef100_C4QZQ7 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
           RepID=C4QZQ7_PICPG
          Length = 1227

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 35/85 (41%), Positives = 55/85 (64%)
 Frame = +2

Query: 206 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 385
           D  I+ ED W VI+A+F+E GLV QQL S++EF+  ++Q LV E P ++L    Q+   +
Sbjct: 9   DDTITTEDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHTNEK 68

Query: 386 DAPDENTKVVIKFGQLRVSKPNFTE 460
           D  + N +  I+FG++ +S+P  TE
Sbjct: 69  D--NINKRYEIRFGKIYLSRPTMTE 91

[156][TOP]
>UniRef100_C5DW43 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS
           732 RepID=C5DW43_ZYGRC
          Length = 1224

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
 Frame = +2

Query: 179 VDEEY--EDP-----NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337
           VDE+Y  EDP      +  I+AED+W VI+A+F E GLV QQL S+N+FV  T+Q ++ E
Sbjct: 6   VDEDYYAEDPYGYEDENFPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISE 65

Query: 338 SPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
              ++L    Q+    D  + + K  I FG++ V+KP   E
Sbjct: 66  DSTLILEQLAQHTTESD--NISRKYEISFGKIYVTKPMVNE 104

[157][TOP]
>UniRef100_C4Y646 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
           42720 RepID=C4Y646_CLAL4
          Length = 369

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
 Frame = +2

Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL----- 355
           Y++ +   I+ ED W VI+++F E GLV QQL S++EF+  T+Q LV E   ++L     
Sbjct: 13  YDEDDSNSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQ 72

Query: 356 -IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
              EDQY        EN +  I FG++ +SKP  TE
Sbjct: 73  HTSEDQY--------ENKRFEITFGKIYISKPTQTE 100

[158][TOP]
>UniRef100_C5LHP3 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
           RepID=C5LHP3_9ALVE
          Length = 993

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 6/107 (5%)
 Frame = +2

Query: 158 EDGVYNGVDEEYEDPNDAD--ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLV 331
           E+ V    D + +D +D +  I  +D+W V +AYF + GLV QQ+ S+++FV+  MQ +V
Sbjct: 88  EEKVAMEEDADLDDDDDVEDEIVQDDSWAVADAYFKDKGLVSQQVGSFDDFVTYKMQEIV 147

Query: 332 DESPDIVLIPEDQYVPGRDAPDE----NTKVVIKFGQLRVSKPNFTE 460
           DE P I +IP++Q   G ++       ++  +++FGQL ++KP   E
Sbjct: 148 DECPPITIIPQNQV--GWESEGARVYMDSSFLVEFGQLSLNKPTVEE 192

[159][TOP]
>UniRef100_C5JQR0 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis
           SLH14081 RepID=C5JQR0_AJEDS
          Length = 1258

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
 Frame = +2

Query: 182 DEEYEDP----NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           +EEY +      D  I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   +
Sbjct: 5   EEEYGEDAYYDQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQV 64

Query: 350 VLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460
            L  +    P  D  D     +  +KFG + +++P+ TE
Sbjct: 65  TL--DQTLAPSEDEIDPVVLRRYELKFGTVMLARPSMTE 101

[160][TOP]
>UniRef100_C5GBN2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3
           RepID=C5GBN2_AJEDR
          Length = 1258

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
 Frame = +2

Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355
           G D  Y+   D  I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   + L
Sbjct: 9   GQDAYYDQ--DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL 66

Query: 356 IPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460
             +    P  D  D     +  +KFG + +++P+ TE
Sbjct: 67  --DQTLAPSEDEIDPVVLRRYELKFGTVMLARPSMTE 101

[161][TOP]
>UniRef100_A6R483 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
           RepID=A6R483_AJECN
          Length = 1743

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
 Frame = +2

Query: 182 DEEYEDP----NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           +EEY +      D  I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   +
Sbjct: 490 EEEYGEDAYYDQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQV 549

Query: 350 VLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460
            L  +    P  D  D     +  +KFG + +++P+ TE
Sbjct: 550 TL--DQTLAPAEDKIDPVVLRRYELKFGTVMLARPSMTE 586

[162][TOP]
>UniRef100_Q6FLD5 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Candida
           glabrata RepID=RPB2_CANGA
          Length = 1223

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 39/104 (37%), Positives = 61/104 (58%)
 Frame = +2

Query: 149 SGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRL 328
           S + +  Y+     +E+ N A I+AED W VI+A+F E GLV QQL S+N+FV  T+Q +
Sbjct: 2   SADNEDYYDEDPYGFEEEN-APITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDI 60

Query: 329 VDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           + E   ++L    Q+   +D  + + K  I FG++ V+KP   E
Sbjct: 61  ISEDSTLILEQLAQHTTEQD--NISRKYEISFGKIYVTKPMVNE 102

[163][TOP]
>UniRef100_B6KB61 DNA-directed RNA polymerase n=3 Tax=Toxoplasma gondii
           RepID=B6KB61_TOXGO
          Length = 1259

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 31/92 (33%), Positives = 53/92 (57%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           E  ++     +  +  W V++++F  HGLV QQL+S+N+FVS  +Q ++DE P I + P 
Sbjct: 76  EHGDEGEQGSVDQDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPT 135

Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            QY P  +  + N    +K  QL +++P+  E
Sbjct: 136 PQYRPEEEV-ESNVIYRLKMDQLSLNRPSVEE 166

[164][TOP]
>UniRef100_C0NB61 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
           RepID=C0NB61_AJECG
          Length = 1307

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
 Frame = +2

Query: 182 DEEYEDP----NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           +EEY +      D  I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   +
Sbjct: 107 EEEYGEDAYYDQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQV 166

Query: 350 VLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460
            L  +    P  D  D     +  +KFG + +++P+ TE
Sbjct: 167 TL--DQTLAPAEDEIDPVVLRRYELKFGTVMLARPSVTE 203

[165][TOP]
>UniRef100_C1H7W3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
           Pb01 RepID=C1H7W3_PARBA
          Length = 1258

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 10/102 (9%)
 Frame = +2

Query: 185 EEYEDPNDAD--------ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340
           E+YE+    D        I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E 
Sbjct: 2   EDYEEEYGEDVYCEQEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQ 61

Query: 341 PDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460
             + L  +    P  D  D     +  +KFG + +++P+ TE
Sbjct: 62  GQVTL--DQTLAPSEDEVDPVVLRRYELKFGTVMLARPSMTE 101

[166][TOP]
>UniRef100_C0S0L5 DNA-directed RNA polymerase n=2 Tax=Paracoccidioides brasiliensis
           RepID=C0S0L5_PARBP
          Length = 1258

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 10/102 (9%)
 Frame = +2

Query: 185 EEYEDPNDAD--------ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340
           E+YE+    D        I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E 
Sbjct: 2   EDYEEEYGEDVYCEQEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQ 61

Query: 341 PDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460
             + L  +    P  D  D     +  +KFG + +++P+ TE
Sbjct: 62  GQVTL--DQTLAPSEDEVDPVVLRRYELKFGTVMLARPSMTE 101

[167][TOP]
>UniRef100_B5RV50 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
           RepID=B5RV50_DEBHA
          Length = 1232

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 36/90 (40%), Positives = 56/90 (62%)
 Frame = +2

Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370
           Y+D +++ I+ E+ W VI+++F E GLV QQL S++EF+  T+Q LV E   ++L    Q
Sbjct: 13  YDDDSES-ITPENCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQ 71

Query: 371 YVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +    D   EN +  I FG++ +SKP  TE
Sbjct: 72  HTSEDD--HENRRYEITFGKIYISKPTQTE 99

[168][TOP]
>UniRef100_C4Q1D7 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
           RepID=C4Q1D7_SCHMA
          Length = 1304

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 39/110 (35%), Positives = 59/110 (53%)
 Frame = +2

Query: 131 LYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVS 310
           L D  +   E   Y       +D    D+  E  W VI++YFDE GLVRQQL S++EF+ 
Sbjct: 119 LEDFEEDDPERQFYGDEQSNEDDEITPDMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQ 178

Query: 311 VTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
            ++Q++V++SP I L  E Q+  G    +   +  +KF Q+ +SK    E
Sbjct: 179 TSIQKIVEDSPIIELQAEAQHSGG--ILETPVQYRLKFEQIYLSKATHWE 226

[169][TOP]
>UniRef100_A7TTM7 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM
           70294 RepID=A7TTM7_VANPO
          Length = 1223

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
 Frame = +2

Query: 170 YNGVDEEYE-DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPD 346
           Y G ++ Y  +   A I+AED+W VI+++F E GLV QQL S+N+FV  T+Q ++ E   
Sbjct: 6   YYGDEDPYGFEEETAPITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDST 65

Query: 347 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           ++L    Q+    D  + + K  I FG++ V+KP   E
Sbjct: 66  LILEQLAQHTTESD--NISRKYEISFGKIYVTKPMVNE 101

[170][TOP]
>UniRef100_A9UUX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
           RepID=A9UUX4_MONBE
          Length = 1166

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 37/89 (41%), Positives = 51/89 (57%)
 Frame = +2

Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373
           +D  D D   E  WEVINAYF E GLVRQQL S++ F++ T+Q+++  SP I +    QY
Sbjct: 1   DDDADIDNWDEACWEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKNSPPIEVQGRLQY 60

Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           +   +  +E  K  I FGQ   + P   E
Sbjct: 61  L--SNEIEEPPKHTISFGQAGFALPQHKE 87

[171][TOP]
>UniRef100_Q02061 DNA-directed RNA polymerase II subunit RPB2 n=1
           Tax=Schizosaccharomyces pombe RepID=RPB2_SCHPO
          Length = 1210

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
 Frame = +2

Query: 191 YEDPN-DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPED 367
           YED   +  ++ ED W VI+++F+E  L RQQL S++EFV  TMQ +VD+   + L   D
Sbjct: 3   YEDYQYNETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTL---D 59

Query: 368 QYVPGRDAP-DENTKVVIKFGQLRVSKPNFTE 460
           QY     A  D   +  I FGQ+ +S+P  TE
Sbjct: 60  QYAQHTGAQGDVTRRYEINFGQIYLSRPTMTE 91

[172][TOP]
>UniRef100_C5MEG3 DNA-directed RNA polymerase n=1 Tax=Candida tropicalis MYA-3404
           RepID=C5MEG3_CANTT
          Length = 1240

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 38/95 (40%), Positives = 56/95 (58%)
 Frame = +2

Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355
           G DEE E      I+ ED W VI+++F E GLV QQL S++EFV  ++Q LV E   ++L
Sbjct: 12  GYDEEIET-----ITQEDCWTVISSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLIL 66

Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
               Q+    D   +N +  I+FG++ +SK + TE
Sbjct: 67  DQPAQHTSVAD--HKNKRYEIEFGKIYISKTSQTE 99

[173][TOP]
>UniRef100_C9JZW8 Putative uncharacterized protein POLR2B n=1 Tax=Homo sapiens
           RepID=C9JZW8_HUMAN
          Length = 76

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 30/66 (45%), Positives = 46/66 (69%)
 Frame = +2

Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364
           +E +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E
Sbjct: 4   DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63

Query: 365 DQYVPG 382
            Q+  G
Sbjct: 64  AQHASG 69

[174][TOP]
>UniRef100_Q98RY5 DNA-directed RNA polymerase n=1 Tax=Guillardia theta
           RepID=Q98RY5_GUITH
          Length = 1206

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 29/86 (33%), Positives = 51/86 (59%)
 Frame = +2

Query: 203 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 382
           N+++   +  W ++  +F + GLV QQ+ S+N F+  TMQ ++D+ P I +  ++   PG
Sbjct: 2   NNSNFDIDILWHILKLFFIQKGLVDQQINSFNNFIQNTMQDIIDDMPPITVYIDND--PG 59

Query: 383 RDAPDENTKVVIKFGQLRVSKPNFTE 460
            D      ++VI+ GQL +SKP + E
Sbjct: 60  NDDLLSKIRMVIRLGQLHLSKPTYIE 85

[175][TOP]
>UniRef100_UPI00017B4CC9 UPI00017B4CC9 related cluster n=1 Tax=Tetraodon nigroviridis
           RepID=UPI00017B4CC9
          Length = 1147

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/72 (43%), Positives = 50/72 (69%)
 Frame = +2

Query: 245 NAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKF 424
           ++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G    +E  + ++KF
Sbjct: 4   SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE--VEEPPRYLLKF 61

Query: 425 GQLRVSKPNFTE 460
            Q+ +SKP   E
Sbjct: 62  EQIYLSKPTHWE 73

[176][TOP]
>UniRef100_Q4T1Y4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon
           nigroviridis RepID=Q4T1Y4_TETNG
          Length = 1217

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/72 (43%), Positives = 50/72 (69%)
 Frame = +2

Query: 245 NAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKF 424
           ++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G    +E  + ++KF
Sbjct: 4   SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE--VEEPPRYLLKF 61

Query: 425 GQLRVSKPNFTE 460
            Q+ +SKP   E
Sbjct: 62  EQIYLSKPTHWE 73

[177][TOP]
>UniRef100_Q8SR75 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Encephalitozoon
           cuniculi RepID=RPB2_ENCCU
          Length = 1141

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 29/81 (35%), Positives = 53/81 (65%)
 Frame = +2

Query: 206 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 385
           ++  + E +W +I+++F++ GLVRQQL S+++FV   MQ +++ESP I++    Q  P  
Sbjct: 2   ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIV----QSAPTA 57

Query: 386 DAPDENTKVVIKFGQLRVSKP 448
              +   ++ ++FGQ+ VSKP
Sbjct: 58  GI-ETQKRIAVRFGQIYVSKP 77

[178][TOP]
>UniRef100_Q1L5A7 RNA polymerase II second largest subunit (Fragment) n=1
           Tax=Spinacia oleracea RepID=Q1L5A7_SPIOL
          Length = 495

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/61 (50%), Positives = 40/61 (65%)
 Frame = +2

Query: 278 QQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFT 457
           QQL S++EF+  TMQ +VDES DI + PE Q+ PG  +    T   IKFGQ+ +SKP  T
Sbjct: 1   QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKIKFGQIYLSKPMMT 60

Query: 458 E 460
           E
Sbjct: 61  E 61

[179][TOP]
>UniRef100_Q2GU47 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
           RepID=Q2GU47_CHAGB
          Length = 1182

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
 Frame = +2

Query: 182 DEEYEDPNDAD--ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355
           + E ED  D D  I+ ED W+VI ++FD  GLV QQ+ S++EF S T+Q LVDE      
Sbjct: 31  EAELEDAEDTDDTITTEDTWDVIQSHFDCKGLVAQQIDSFDEFTSTTIQSLVDEVTKRAR 90

Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQ 430
           +  ++ V  +D  +E  + + + G+
Sbjct: 91  VAINEEVALKDMDEEQQEYMARTGE 115

[180][TOP]
>UniRef100_Q4Q6P8 DNA-directed RNA polymerase n=1 Tax=Leishmania major
           RepID=Q4Q6P8_LEIMA
          Length = 1185

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 33/75 (44%), Positives = 53/75 (70%)
 Frame = +2

Query: 158 EDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337
           +DG+ +  D+E  +PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ E
Sbjct: 17  DDGIVDEHDDE--NPND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-E 71

Query: 338 SPDIVLIPEDQYVPG 382
           S  ++   +DQY PG
Sbjct: 72  SMAVIPRQDDQYDPG 86

[181][TOP]
>UniRef100_C4V8X8 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
           RepID=C4V8X8_NOSCE
          Length = 1143

 Score = 60.8 bits (146), Expect = 4e-08
 Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
 Frame = +2

Query: 224 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 403
           E +W++I+ +F++ GLV QQ+ S+++FV   MQ ++DESP I +  +     G +     
Sbjct: 8   EYSWDIISKFFEQKGLVGQQIDSFDQFVKTKMQEVIDESPLITV--QSTLSAGNET---R 62

Query: 404 TKVVIKFGQLRVSK-PNFTE 460
            K+ +KFGQ+ VSK P++TE
Sbjct: 63  KKITLKFGQIYVSKPPSYTE 82

[182][TOP]
>UniRef100_A4I6A8 DNA-directed RNA polymerase n=1 Tax=Leishmania infantum
           RepID=A4I6A8_LEIIN
          Length = 1181

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 32/70 (45%), Positives = 51/70 (72%)
 Frame = +2

Query: 173 NGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352
           +G+D+E  +PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES  ++
Sbjct: 18  DGIDDE--NPND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVI 72

Query: 353 LIPEDQYVPG 382
              +DQY PG
Sbjct: 73  PRQDDQYDPG 82

[183][TOP]
>UniRef100_A1RWW6 DNA-directed RNA polymerase n=1 Tax=Thermofilum pendens Hrk 5
           RepID=A1RWW6_THEPD
          Length = 1130

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 34/84 (40%), Positives = 45/84 (53%)
 Frame = +2

Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388
           A +S ED W V+ AY DE GLVRQ L S+N F+   +Q +VDE   I +           
Sbjct: 8   AKLSREDRWRVVKAYVDELGLVRQHLDSFNAFLERGLQEIVDEVGGIKV----------- 56

Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460
              E+  V IKFG++ V +P F E
Sbjct: 57  ---ESQGVEIKFGKIEVGQPTFRE 77

[184][TOP]
>UniRef100_A4HIZ1 DNA-directed RNA polymerase n=1 Tax=Leishmania braziliensis
           RepID=A4HIZ1_LEIBR
          Length = 1185

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 33/75 (44%), Positives = 52/75 (69%)
 Frame = +2

Query: 158 EDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337
           +DG  +  D+E  +PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ E
Sbjct: 17  DDGFIDERDDE--NPND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-E 71

Query: 338 SPDIVLIPEDQYVPG 382
           S  ++   +DQY PG
Sbjct: 72  SMAVIPRQDDQYDPG 86

[185][TOP]
>UniRef100_Q583H5 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
           RepID=Q583H5_9TRYP
          Length = 1190

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 31/86 (36%), Positives = 50/86 (58%)
 Frame = +2

Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373
           E+ N ADI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+     +IV   +DQ+
Sbjct: 31  ENVNTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFL-LRIPRMARSLLEIVPRQDDQF 89

Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPN 451
            PG     E  +  +    + V  P+
Sbjct: 90  DPGVHVESEPDQYRLSLEDVVVGNPS 115

[186][TOP]
>UniRef100_C9ZN35 DNA-directed RNA polymerase II subunit 2, putative n=1
           Tax=Trypanosoma brucei gambiense DAL972
           RepID=C9ZN35_TRYBG
          Length = 1189

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 31/86 (36%), Positives = 50/86 (58%)
 Frame = +2

Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373
           E+ N ADI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+     +IV   +DQ+
Sbjct: 30  ENVNTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFL-LRIPRMARSLLEIVPRQDDQF 88

Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPN 451
            PG     E  +  +    + V  P+
Sbjct: 89  DPGVHVESEPDQYRLSLEDVVVGNPS 114

[187][TOP]
>UniRef100_C9JMN3 Putative uncharacterized protein POLR2B n=1 Tax=Homo sapiens
           RepID=C9JMN3_HUMAN
          Length = 64

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 26/57 (45%), Positives = 43/57 (75%), Gaps = 3/57 (5%)
 Frame = +2

Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESP 343
           D +Y++ +D    D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P
Sbjct: 7   DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAP 63

[188][TOP]
>UniRef100_C4PBI7 DNA-directed RNA polymerase n=1 Tax=Epichloe festucae
           RepID=C4PBI7_9HYPO
          Length = 1261

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
 Frame = +2

Query: 182 DEEYED--PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355
           D +YE+   +D  I+ ED W VI+++F+  GLV QQ  S++EF   T+Q LV+E   I L
Sbjct: 7   DYDYENYGEDDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITL 66

Query: 356 -IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
             P     PG        +  IKFG + VS+P  +E
Sbjct: 67  DQPNPPSPPG--IKIALRRYEIKFGTVMVSRPTISE 100

[189][TOP]
>UniRef100_C6A1F9 DNA-directed RNA polymerase n=1 Tax=Thermococcus sibiricus MM 739
           RepID=C6A1F9_THESM
          Length = 1118

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 30/87 (34%), Positives = 46/87 (52%)
 Frame = +2

Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379
           P   +++ +D W ++ AY+DE GLVRQ L SYN F+   MQ ++ E   +          
Sbjct: 4   PTIVEVTPDDLWHIMKAYWDEKGLVRQHLDSYNAFIEHGMQEVISEFEGV---------- 53

Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460
             D PD      +KFG++R+ +P F E
Sbjct: 54  KPDIPD----FEVKFGRVRLGEPEFQE 76

[190][TOP]
>UniRef100_C3N7P9 DNA-directed RNA polymerase n=2 Tax=Sulfolobus islandicus
           RepID=C3N7P9_SULIY
          Length = 1131

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 29/84 (34%), Positives = 46/84 (54%)
 Frame = +2

Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388
           +++S ++ W+VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 6   SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52

Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460
            P E   + ++ G++R+ KP   E
Sbjct: 53  -PTEIPGLKVRLGKIRIGKPRVRE 75

[191][TOP]
>UniRef100_C3MY98 DNA-directed RNA polymerase n=3 Tax=Sulfolobus islandicus
           RepID=C3MY98_SULIM
          Length = 1131

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 29/84 (34%), Positives = 46/84 (54%)
 Frame = +2

Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388
           +++S ++ W+VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 6   SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52

Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460
            P E   + ++ G++R+ KP   E
Sbjct: 53  -PTEIPGLKVRLGKIRIGKPRVRE 75

[192][TOP]
>UniRef100_C3MRK2 DNA-directed RNA polymerase n=1 Tax=Sulfolobus islandicus L.S.2.15
           RepID=C3MRK2_SULIL
          Length = 1131

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 29/84 (34%), Positives = 46/84 (54%)
 Frame = +2

Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388
           +++S ++ W+VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 6   SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52

Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460
            P E   + ++ G++R+ KP   E
Sbjct: 53  -PTEIPGLKVRLGKIRIGKPRVRE 75

[193][TOP]
>UniRef100_B6YT15 DNA-directed RNA polymerase n=1 Tax=Thermococcus onnurineus NA1
           RepID=B6YT15_THEON
          Length = 1120

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 32/87 (36%), Positives = 47/87 (54%)
 Frame = +2

Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379
           P   D++ +D W V+ AY+ E GLVRQ L SYN F+   MQ++++E   I          
Sbjct: 4   PTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDYGMQQVINEFGGI---------- 53

Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460
             D PD      +KFG++R+ +P F E
Sbjct: 54  KPDIPD----FEVKFGKIRLGEPEFQE 76

[194][TOP]
>UniRef100_B8YB55 DNA-directed RNA polymerase n=1 Tax=Sulfolobus shibatae B12
           RepID=B8YB55_SULSH
          Length = 1131

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 29/84 (34%), Positives = 46/84 (54%)
 Frame = +2

Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388
           +++S ++ W+VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 6   SNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52

Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460
            P E   + ++ G++R+ KP   E
Sbjct: 53  -PTEIPGLKVRLGKIRIGKPRVRE 75

[195][TOP]
>UniRef100_P31814 DNA-directed RNA polymerase subunit B n=1 Tax=Thermococcus celer
           RepID=RPOB_THECE
          Length = 1122

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 32/87 (36%), Positives = 46/87 (52%)
 Frame = +2

Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379
           P   D++ +D W V+ AY+ E GLVRQ L SYN F+   MQ ++DE   +          
Sbjct: 6   PTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGV---------- 55

Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460
             D PD      +KFG++R+ +P F E
Sbjct: 56  KPDIPD----FEVKFGKVRLGEPEFQE 78

[196][TOP]
>UniRef100_Q4CRQ2 DNA-directed RNA polymerase II subunit 2, putative (Fragment) n=1
           Tax=Trypanosoma cruzi RepID=Q4CRQ2_TRYCR
          Length = 617

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 32/98 (32%), Positives = 53/98 (54%)
 Frame = +2

Query: 158 EDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337
           EDG    VD E+      DI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+   
Sbjct: 17  EDGADYTVDGEHA--GSTDIDSEDIWEIISSFFREKGLVHQQIDSYNDFL-LRIPRMARS 73

Query: 338 SPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPN 451
             +IV   ++Q+ PG     E  +  +    + +  P+
Sbjct: 74  LLEIVPRQDEQFEPGTQTETEPDQYRLSLEDVVIGNPS 111

[197][TOP]
>UniRef100_O59226 DNA-directed RNA polymerase n=1 Tax=Pyrococcus horikoshii
           RepID=O59226_PYRHO
          Length = 1117

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 32/87 (36%), Positives = 47/87 (54%)
 Frame = +2

Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379
           P   +++ +D W V+ +Y++E GLVRQ L SYN F+   +Q +VDE   I          
Sbjct: 4   PTVVEVTPDDLWIVMESYWEEKGLVRQHLDSYNAFIERGLQEVVDEFGGI---------- 53

Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460
             D PD      +KFG++RV +P F E
Sbjct: 54  KPDIPD----FEVKFGKIRVGEPEFQE 76

[198][TOP]
>UniRef100_C7ZA30 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI
           77-13-4 RepID=C7ZA30_NECH7
          Length = 1261

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
 Frame = +2

Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319
           M+D   E   Y+  D++ E      I+ ED W VI+++F+  GLV QQ  S++EF   T+
Sbjct: 1   MADYEEELSDYDNYDDQEEG-----ITPEDCWTVISSFFESKGLVSQQTDSFDEFTQTTI 55

Query: 320 QRLVDESPDIVL-IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
           Q LV+E   I L  P     PG        +  IKFG + VS+P  +E
Sbjct: 56  QDLVNEYSVISLDQPNPPSPPG--VSIALRRYEIKFGSVMVSRPTISE 101

[199][TOP]
>UniRef100_Q9V115 DNA-directed RNA polymerase n=1 Tax=Pyrococcus abyssi
           RepID=Q9V115_PYRAB
          Length = 1117

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 32/87 (36%), Positives = 46/87 (52%)
 Frame = +2

Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379
           P   +++ +D W V+ +Y+ E GLVRQ L SYN F+   +Q +VDE   I          
Sbjct: 4   PTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGI---------- 53

Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460
             D PD      +KFG++RV +P F E
Sbjct: 54  KPDIPD----FEVKFGKIRVGEPEFQE 76

[200][TOP]
>UniRef100_A4YCQ8 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348
           RepID=A4YCQ8_METS5
          Length = 1124

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 28/82 (34%), Positives = 45/82 (54%)
 Frame = +2

Query: 215 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 394
           +S +D W ++ AYF   GLVRQ L S+N+F+   +Q ++DE  +I+       +PG    
Sbjct: 2   LSVDDRWVIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEII-----TEIPG---- 52

Query: 395 DENTKVVIKFGQLRVSKPNFTE 460
                + I+ G++RV KP   E
Sbjct: 53  -----LKIRLGKIRVGKPRVRE 69

[201][TOP]
>UniRef100_Q01GR5 RPB2_LYCES DNA-directed RNA polymerase II 135 kDa polypeptide (ISS)
           n=1 Tax=Ostreococcus tauri RepID=Q01GR5_OSTTA
          Length = 86

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
 Frame = +2

Query: 155 NEDGVYNGVDEEYEDPND------ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVT 316
           +ED V   VD   ED  +      A+   EDAW VI+++F+E GLVRQQL S+NEF+  T
Sbjct: 5   DEDDVDMRVDGHEEDEEEEIGQGRAERLQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHT 64

Query: 317 MQRLV 331
           MQ +V
Sbjct: 65  MQEIV 69

[202][TOP]
>UniRef100_Q980R0 DNA-directed RNA polymerase, subunit B'' (RpoB2) n=1 Tax=Sulfolobus
           solfataricus RepID=Q980R0_SULSO
          Length = 480

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 28/84 (33%), Positives = 45/84 (53%)
 Frame = +2

Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388
           ++++ ++ W VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 3   SNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 49

Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460
            P E   + ++ G++R+ KP   E
Sbjct: 50  -PTEIPGLKVRLGKIRIGKPRVRE 72

[203][TOP]
>UniRef100_Q8U0M3 DNA-directed RNA polymerase n=1 Tax=Pyrococcus furiosus
           RepID=Q8U0M3_PYRFU
          Length = 1117

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 32/87 (36%), Positives = 46/87 (52%)
 Frame = +2

Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379
           P   D++ +D W V+ +Y+ E GLVRQ L SYN F+   +Q +V+E   I          
Sbjct: 4   PTVVDVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGI---------- 53

Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460
             D PD      +KFG++RV +P F E
Sbjct: 54  KPDIPD----FEVKFGKIRVGEPEFQE 76

[204][TOP]
>UniRef100_C5SSJ4 DNA-directed RNA polymerase n=1 Tax=Sulfolobus solfataricus 98/2
           RepID=C5SSJ4_SULSO
          Length = 1124

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 28/84 (33%), Positives = 45/84 (53%)
 Frame = +2

Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388
           ++++ ++ W VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 3   SNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 49

Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460
            P E   + ++ G++R+ KP   E
Sbjct: 50  -PTEIPGLKVRLGKIRIGKPRVRE 72

[205][TOP]
>UniRef100_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis G3
           RepID=A2E7H8_TRIVA
          Length = 1177

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
 Frame = +2

Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370
           Y D N+ + S  D W VI+ +F+  GLV+QQL+SYN F++  +  ++D+   I L   DQ
Sbjct: 8   YVDANEDNWSQNDMWMVISKFFENRGLVKQQLKSYNSFINNCVDSVLDDKGHITL-QSDQ 66

Query: 371 YVPGR---------DAPDENTKVVIKFGQLRVSKPNFTE 460
            +  +         D  D+   + I FG   V +P   E
Sbjct: 67  LLANKIKMDFNSNDDDEDQGKTIHISFGTSTVLRPTTPE 105

[206][TOP]
>UniRef100_A8AA81 DNA-directed RNA polymerase n=1 Tax=Ignicoccus hospitalis KIN4/I
           RepID=A8AA81_IGNH4
          Length = 1132

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 23/42 (54%), Positives = 33/42 (78%)
 Frame = +2

Query: 224 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349
           ED W ++ AYF E GLV QQL+SYN+FV+ TMQ+L++E  ++
Sbjct: 11  EDRWAIMRAYFKEKGLVSQQLESYNKFVTETMQKLIEELGEV 52

[207][TOP]
>UniRef100_B5IVZ8 DNA-directed RNA polymerase n=1 Tax=Thermococcus barophilus MP
           RepID=B5IVZ8_9EURY
          Length = 1118

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
 Frame = +2

Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE----SPDIVLIPED 367
           P   +++ +D W V+ +Y++E GLVRQ L SYN F+   MQ +++E     PDI      
Sbjct: 4   PTVVEVTPDDLWSVMESYWNEKGLVRQHLDSYNAFIDHGMQEVINEFGGIKPDI------ 57

Query: 368 QYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460
                           +KFG++R+ +P F E
Sbjct: 58  ------------PNFEVKFGKIRLGEPEFQE 76

[208][TOP]
>UniRef100_C5Y8Y9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
           RepID=C5Y8Y9_SORBI
          Length = 1239

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
 Frame = +2

Query: 155 NEDGVYNGVDEEYED-PNDADISAEDAW--EVINAYFDEHGLVRQQLQSYNEFVSVTMQR 325
           N+D       E Y + P D  + + + +  E   ++FDE GL+  Q+ SYNEFVS  +Q 
Sbjct: 73  NDDVNGKSSSEPYSNAPIDMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQE 132

Query: 326 LVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNF 454
           L D   ++++  E  Y P +         +IKFG++++ KP F
Sbjct: 133 LFDSLGEVIV--EPGYDPSKKGSGGWKHAIIKFGRVKLEKPVF 173

[209][TOP]
>UniRef100_B4FHF6 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FHF6_MAIZE
          Length = 267

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 27/73 (36%), Positives = 42/73 (57%)
 Frame = +2

Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++++  E  Y P +         +
Sbjct: 93  EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGSWKHAI 150

Query: 416 IKFGQLRVSKPNF 454
           IKFG++++ KP F
Sbjct: 151 IKFGRVKLEKPVF 163

[210][TOP]
>UniRef100_Q07DU9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays
           RepID=Q07DU9_MAIZE
          Length = 1170

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 27/73 (36%), Positives = 42/73 (57%)
 Frame = +2

Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++++  E  Y P +         +
Sbjct: 34  EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGGWKHAI 91

Query: 416 IKFGQLRVSKPNF 454
           IKFG++++ KP F
Sbjct: 92  IKFGRVKLEKPVF 104

[211][TOP]
>UniRef100_C5WRS0 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
           RepID=C5WRS0_SORBI
          Length = 1228

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
 Frame = +2

Query: 173 NGVDEEYEDPNDADISAED----AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340
           NG   E       D+S E       E   ++FDE GL+  Q+ SYN+FVS  +Q L D  
Sbjct: 67  NGKSSEPYSNAPIDLSVESLEKFCKEASRSFFDEVGLISHQINSYNDFVSHGLQELFDSL 126

Query: 341 PDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNF 454
            ++++  E  Y P +         +IKFG++++ KP F
Sbjct: 127 GEVIV--EPGYDPSKKGSGGWKHAIIKFGRVKLEKPVF 162

[212][TOP]
>UniRef100_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348
           RepID=A9CSV4_ENTBH
          Length = 1138

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 27/75 (36%), Positives = 46/75 (61%)
 Frame = +2

Query: 224 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 403
           E+ W +I ++FD+ GLVRQQL S+N+FV + MQ ++DE+  I +    + +P      E 
Sbjct: 19  ENNWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIIDENSIISV----KSIPTAGNSIER 74

Query: 404 TKVVIKFGQLRVSKP 448
            ++ + FGQ+ +  P
Sbjct: 75  -EIKLYFGQISILGP 88

[213][TOP]
>UniRef100_Q7XTQ7 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
           RepID=Q7XTQ7_ORYSJ
          Length = 1343

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%)
 Frame = +2

Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++ +  E  Y P    P      +
Sbjct: 153 EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 210

Query: 416 IKFGQLRVSKPNF 454
           IKFG++++ +P F
Sbjct: 211 IKFGRVQLEEPVF 223

[214][TOP]
>UniRef100_Q7F9D6 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
           RepID=Q7F9D6_ORYSJ
          Length = 1316

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%)
 Frame = +2

Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++ +  E  Y P    P      +
Sbjct: 153 EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 210

Query: 416 IKFGQLRVSKPNF 454
           IKFG++++ +P F
Sbjct: 211 IKFGRVQLEEPVF 223

[215][TOP]
>UniRef100_Q259Y6 DNA-directed RNA polymerase n=1 Tax=Oryza sativa RepID=Q259Y6_ORYSA
          Length = 1343

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%)
 Frame = +2

Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++ +  E  Y P    P      +
Sbjct: 153 EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 210

Query: 416 IKFGQLRVSKPNF 454
           IKFG++++ +P F
Sbjct: 211 IKFGRVQLEEPVF 223

[216][TOP]
>UniRef100_Q0J9N2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oryza sativa
           Japonica Group RepID=Q0J9N2_ORYSJ
          Length = 1270

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%)
 Frame = +2

Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++ +  E  Y P    P      +
Sbjct: 107 EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 164

Query: 416 IKFGQLRVSKPNF 454
           IKFG++++ +P F
Sbjct: 165 IKFGRVQLEEPVF 177

[217][TOP]
>UniRef100_B9FCT0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
           RepID=B9FCT0_ORYSJ
          Length = 1185

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%)
 Frame = +2

Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++ +  E  Y P    P      +
Sbjct: 89  EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 146

Query: 416 IKFGQLRVSKPNF 454
           IKFG++++ +P F
Sbjct: 147 IKFGRVQLEEPVF 159

[218][TOP]
>UniRef100_B8AV78 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
           RepID=B8AV78_ORYSI
          Length = 1177

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%)
 Frame = +2

Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++ +  E  Y P    P      +
Sbjct: 89  EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 146

Query: 416 IKFGQLRVSKPNF 454
           IKFG++++ +P F
Sbjct: 147 IKFGRVQLEEPVF 159