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[1][TOP] >UniRef100_A8I9Z6 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8I9Z6_CHLRE Length = 1634 Score = 105 bits (261), Expect = 2e-21 Identities = 49/99 (49%), Positives = 74/99 (74%), Gaps = 4/99 (4%) Frame = +2 Query: 176 GVDEEY----EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESP 343 G DE++ ++ D +I ED+W VI A+FD+ GLVRQQL S+NEFV+VT+Q ++DE+P Sbjct: 3 GADEDHMEVVQEEEDTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETP 62 Query: 344 DIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +IV+ PE Q++PG +A +E + +IKFGQ+ +S+P TE Sbjct: 63 EIVIKPESQHLPGVEAAEEK-EYIIKFGQVYLSRPQITE 100 [2][TOP] >UniRef100_Q1L5X1 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=Q1L5X1_CHLRE Length = 1607 Score = 103 bits (257), Expect = 6e-21 Identities = 47/92 (51%), Positives = 70/92 (76%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E ++ D +I ED+W VI A+FD+ GLVRQQL S+NEFV+VT+Q ++DE+P+IV+ PE Sbjct: 2 EVVQEEEDTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPE 61 Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q++PG +A +E + +IKFGQ+ +S+P TE Sbjct: 62 SQHLPGVEAAEEK-EYIIKFGQVYLSRPQITE 92 [3][TOP] >UniRef100_A9SJE5 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SJE5_PHYPA Length = 1185 Score = 102 bits (255), Expect = 1e-20 Identities = 52/95 (54%), Positives = 67/95 (70%) Frame = +2 Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355 G DEEY+D + +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + Sbjct: 3 GGDEEYDDEEE-EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIEI 61 Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 PE Q+ PGR A + I FGQ+ +SKP TE Sbjct: 62 RPESQHNPGRQAEIGDVTYKINFGQIYLSKPMMTE 96 [4][TOP] >UniRef100_B9RZ91 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RZ91_RICCO Length = 1194 Score = 102 bits (254), Expect = 1e-20 Identities = 49/94 (52%), Positives = 67/94 (71%) Frame = +2 Query: 179 VDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI 358 ++E+YED ++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + Sbjct: 11 LNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70 Query: 359 PEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 PE Q+ PG + T I FGQ+ +SKP TE Sbjct: 71 PESQHNPGHQSDFAETIYKISFGQIYLSKPMMTE 104 [5][TOP] >UniRef100_Q10G20 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=Q10G20_ORYSJ Length = 1222 Score = 99.8 bits (247), Expect = 9e-20 Identities = 53/106 (50%), Positives = 69/106 (65%), Gaps = 5/106 (4%) Frame = +2 Query: 158 EDGVYNGVDEEYED-----PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQ 322 E G G + E E+ P++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ Sbjct: 30 EYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ 89 Query: 323 RLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +VDES DI + PE Q+ PGR A T I FGQ+ +SKP TE Sbjct: 90 EIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTE 135 [6][TOP] >UniRef100_A7PJ31 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7PJ31_VITVI Length = 1220 Score = 99.4 bits (246), Expect = 1e-19 Identities = 50/97 (51%), Positives = 66/97 (68%) Frame = +2 Query: 170 YNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 Y+ E E+ +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI Sbjct: 7 YDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 66 Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + PE Q+ PGR + T I FGQ+ +SKP TE Sbjct: 67 EIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTE 103 [7][TOP] >UniRef100_A5C1N0 DNA-directed RNA polymerase n=2 Tax=Vitis RepID=A5C1N0_VITVI Length = 1193 Score = 99.4 bits (246), Expect = 1e-19 Identities = 50/97 (51%), Positives = 66/97 (68%) Frame = +2 Query: 170 YNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 Y+ E E+ +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI Sbjct: 7 YDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 66 Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + PE Q+ PGR + T I FGQ+ +SKP TE Sbjct: 67 EIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTE 103 [8][TOP] >UniRef100_C5WR62 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5WR62_SORBI Length = 1218 Score = 98.6 bits (244), Expect = 2e-19 Identities = 54/107 (50%), Positives = 67/107 (62%), Gaps = 4/107 (3%) Frame = +2 Query: 152 GNEDGVYNGVDEEYEDPNDAD----ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319 G DG +G + E E D D I +DAW VI+AYF+E GLVRQQL S++EF+ TM Sbjct: 40 GGGDGDGDGEEMEEEADGDPDLRDEIGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 99 Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q +VDES DI + PE Q+ PGR A T I FGQ+ +SKP TE Sbjct: 100 QEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTE 146 [9][TOP] >UniRef100_P38420 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Arabidopsis thaliana RepID=RPB2_ARATH Length = 1188 Score = 98.6 bits (244), Expect = 2e-19 Identities = 49/97 (50%), Positives = 64/97 (65%) Frame = +2 Query: 170 YNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 Y + ED +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI Sbjct: 6 YEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 65 Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + PE Q+ PG + T I FGQ+ +SKP TE Sbjct: 66 EIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTE 102 [10][TOP] >UniRef100_Q1L5Y8 DNA-directed RNA polymerase n=1 Tax=Antirrhinum majus RepID=Q1L5Y8_ANTMA Length = 1200 Score = 98.2 bits (243), Expect = 2e-19 Identities = 49/93 (52%), Positives = 63/93 (67%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 +E E+ + DIS EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + P Sbjct: 18 NENDEEEEEEDISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 77 Query: 362 EDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 E Q+ PG+ T I FGQ+ +SKP TE Sbjct: 78 ESQHNPGQQPDFAETIYKISFGQIYLSKPMMTE 110 [11][TOP] >UniRef100_B9FA12 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=B9FA12_ORYSJ Length = 1218 Score = 98.2 bits (243), Expect = 2e-19 Identities = 48/87 (55%), Positives = 62/87 (71%) Frame = +2 Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379 P++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ P Sbjct: 45 PDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 104 Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460 GR A T I FGQ+ +SKP TE Sbjct: 105 GRQAEFAETLHKISFGQIYLSKPMMTE 131 [12][TOP] >UniRef100_Q1L5Z3 DNA-directed RNA polymerase n=1 Tax=Antirrhinum majus RepID=Q1L5Z3_ANTMA Length = 1198 Score = 97.8 bits (242), Expect = 3e-19 Identities = 50/110 (45%), Positives = 68/110 (61%) Frame = +2 Query: 131 LYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVS 310 +Y D + V D + E+ D DIS EDAW VI++YF+E GLVRQQL S++EF+ Sbjct: 1 MYGGGDPYPDQNVVEVHDHDEEEKEDEDISQEDAWTVISSYFEEKGLVRQQLDSFDEFIQ 60 Query: 311 VTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 TMQ +VDES +I + PE Q+ PG ++ I FGQ+ +SKP TE Sbjct: 61 NTMQEIVDESSNIEIRPESQHNPGGNSDFAEAMYRISFGQIYLSKPMMTE 110 [13][TOP] >UniRef100_Q1L5B4 DNA-directed RNA polymerase n=1 Tax=Rhododendron macrophyllum RepID=Q1L5B4_RHOMC Length = 1207 Score = 97.4 bits (241), Expect = 4e-19 Identities = 50/110 (45%), Positives = 71/110 (64%) Frame = +2 Query: 131 LYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVS 310 + ++ D G+ DG + +D ++ +IS EDAW VI+AYF+E GLVRQQL S++EF+ Sbjct: 17 IVNVGDGGDGDG-------DGDDDDEEEISQEDAWTVISAYFEEKGLVRQQLDSFDEFIQ 69 Query: 311 VTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 TMQ +VDE+ DI + PE Q+ PGR + I FGQ+ +SKP TE Sbjct: 70 NTMQEIVDEAADIEIKPESQHNPGRQSDFVEMVYRISFGQIYLSKPMMTE 119 [14][TOP] >UniRef100_Q42877 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Solanum lycopersicum RepID=RPB2_SOLLC Length = 1191 Score = 97.1 bits (240), Expect = 6e-19 Identities = 49/99 (49%), Positives = 67/99 (67%), Gaps = 5/99 (5%) Frame = +2 Query: 179 VDEEYE-----DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESP 343 +++EYE D ++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES Sbjct: 3 MEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 62 Query: 344 DIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 DI + PE Q+ PG + T I FGQ+ +SKP TE Sbjct: 63 DIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTE 101 [15][TOP] >UniRef100_Q1L5Y9 DNA-directed RNA polymerase n=1 Tax=Petunia x hybrida RepID=Q1L5Y9_PETHY Length = 1195 Score = 96.7 bits (239), Expect = 7e-19 Identities = 47/94 (50%), Positives = 64/94 (68%) Frame = +2 Query: 179 VDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI 358 ++ E E+ + +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + Sbjct: 12 MNNEEEEEEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 71 Query: 359 PEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 PE Q+ PG + T I FGQ+ +SKP TE Sbjct: 72 PESQHNPGHQSDFAETIYKINFGQIYLSKPMMTE 105 [16][TOP] >UniRef100_B9H2V2 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H2V2_POPTR Length = 690 Score = 96.3 bits (238), Expect = 9e-19 Identities = 48/92 (52%), Positives = 62/92 (67%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E E+ D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Sbjct: 2 EPEEEDADEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 61 Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q+ PG + T I FGQ+ +SKP TE Sbjct: 62 SQHNPGHQSDFAETIYKISFGQIYLSKPMMTE 93 [17][TOP] >UniRef100_Q1L5B5 DNA-directed RNA polymerase n=1 Tax=Rhododendron macrophyllum RepID=Q1L5B5_RHOMC Length = 1191 Score = 95.5 bits (236), Expect = 2e-18 Identities = 48/96 (50%), Positives = 65/96 (67%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYE---DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 +EEY+ + + +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI Sbjct: 6 EEEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 65 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + PE Q+ PG + T I FGQ+ +SKP TE Sbjct: 66 IRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTE 101 [18][TOP] >UniRef100_Q54J75 DNA-directed RNA polymerase II subunit rpb2 n=1 Tax=Dictyostelium discoideum RepID=RPB2_DICDI Length = 1170 Score = 94.7 bits (234), Expect = 3e-18 Identities = 46/91 (50%), Positives = 62/91 (68%), Gaps = 1/91 (1%) Frame = +2 Query: 179 VDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI 358 ++++ +D ADIS ED W VI+AYF E GLVRQQL S++EF+ TMQ ++DESP I L Sbjct: 6 MNDDSQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLR 65 Query: 359 PEDQYVPGRDAPDENTKVV-IKFGQLRVSKP 448 PE Q+ PG+ N +KFGQ+ +SKP Sbjct: 66 PESQHHPGQAVVSNNVSTFSVKFGQIYLSKP 96 [19][TOP] >UniRef100_Q1L5Z2 DNA-directed RNA polymerase n=1 Tax=Petunia x hybrida RepID=Q1L5Z2_PETHY Length = 1203 Score = 94.0 bits (232), Expect = 5e-18 Identities = 49/107 (45%), Positives = 70/107 (65%), Gaps = 2/107 (1%) Frame = +2 Query: 146 DSGNEDGVYNGVDEEYEDPNDA--DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319 D +D VDE+ +D +D +I+ +DAW VI+AYF+E GLVRQQL S++EF+ TM Sbjct: 9 DENIDDRTTMAVDEQEDDYDDESQEITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 68 Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q +VDE+ DI + PE Q+ P R + +T IKF Q+ +S+P TE Sbjct: 69 QEIVDETADIEIRPESQHNPARQSDFVDTIYKIKFTQIYLSRPMMTE 115 [20][TOP] >UniRef100_Q1L5Z1 DNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum RepID=Q1L5Z1_SOLLC Length = 1205 Score = 93.2 bits (230), Expect = 8e-18 Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 1/109 (0%) Frame = +2 Query: 137 DMSDSGNEDGVYNG-VDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSV 313 DM +E G G VDE+ ++ +I+ +DAW VI++YF+E GLVRQQL S++EF+ Sbjct: 13 DMVQVEDEGGEGRGDVDEDEDEDESREITQDDAWAVISSYFEEKGLVRQQLDSFDEFIQN 72 Query: 314 TMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 TMQ +VDE+ DI + PE Q+ P R T IKF Q+ +S+P TE Sbjct: 73 TMQEIVDETADIEIRPESQHNPSRQPDFVETIYKIKFTQIYLSRPMMTE 121 [21][TOP] >UniRef100_A4RQU3 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RQU3_OSTLU Length = 1174 Score = 90.5 bits (223), Expect = 5e-17 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 1/90 (1%) Frame = +2 Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373 ED + +I EDAW VI+++F+E GLVRQQL S+NEF+ TMQ +VDE +I L PE Q+ Sbjct: 7 EDDEEEEIGQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIELTPEHQH 66 Query: 374 VPGRDAPDENTKVV-IKFGQLRVSKPNFTE 460 +PG+D K I F Q+ +SKP TE Sbjct: 67 MPGQDIDSMEKKTYKISFNQIYLSKPMVTE 96 [22][TOP] >UniRef100_Q1L5Z4 DNA-directed RNA polymerase n=1 Tax=Nicotiana sylvestris RepID=Q1L5Z4_NICSY Length = 1203 Score = 90.1 bits (222), Expect = 7e-17 Identities = 49/108 (45%), Positives = 66/108 (61%), Gaps = 3/108 (2%) Frame = +2 Query: 146 DSGNEDGVYNGVDEEYEDPND---ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVT 316 D +D V VDEE E +I+ +DAW VI+AYF+E GLVRQQL S++EF+ T Sbjct: 9 DENVDDRVLMAVDEEEEQAEGDEAQEITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNT 68 Query: 317 MQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 MQ +VDE+ +I + PE Q+ P R T IKF Q+ +S+P TE Sbjct: 69 MQEIVDETANIEIRPESQHNPSRQPDFVETIYKIKFTQIYLSRPMMTE 116 [23][TOP] >UniRef100_Q7RQI2 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii RepID=Q7RQI2_PLAYO Length = 1312 Score = 87.4 bits (215), Expect = 4e-16 Identities = 43/99 (43%), Positives = 64/99 (64%), Gaps = 6/99 (6%) Frame = +2 Query: 182 DEEYEDPNDAD----ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 D+ ED +D D I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P+I Sbjct: 18 DQNIEDVSDKDDEDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNI 77 Query: 350 VLIPEDQYVPGRDAPDENTKVV--IKFGQLRVSKPNFTE 460 + P+ QY P + DEN ++ +KFGQL + +P F E Sbjct: 78 EIKPQPQYRPDK---DENNNIIYSLKFGQLSLDRPFFDE 113 [24][TOP] >UniRef100_Q4YWL7 Putative uncharacterized protein (Fragment) n=1 Tax=Plasmodium berghei RepID=Q4YWL7_PLABE Length = 467 Score = 87.4 bits (215), Expect = 4e-16 Identities = 43/99 (43%), Positives = 64/99 (64%), Gaps = 6/99 (6%) Frame = +2 Query: 182 DEEYEDPNDAD----ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 D+ ED +D D I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P+I Sbjct: 18 DQNLEDVSDKDDDDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNI 77 Query: 350 VLIPEDQYVPGRDAPDENTKVV--IKFGQLRVSKPNFTE 460 + P+ QY P + DEN ++ +KFGQL + +P F E Sbjct: 78 EIKPQPQYRPDK---DENNNIIYSLKFGQLSLDRPFFDE 113 [25][TOP] >UniRef100_C1E1U0 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299 RepID=C1E1U0_9CHLO Length = 1178 Score = 85.9 bits (211), Expect = 1e-15 Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 1/94 (1%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 +E + +I EDAW VI+++F+E GL RQQL S+NEF+ TMQ +VDE D + P Sbjct: 3 EENVAVEEEEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFTIEP 62 Query: 362 EDQYVPGRDAPDE-NTKVVIKFGQLRVSKPNFTE 460 E+Q++PG +A + K ++F Q+ +SKP TE Sbjct: 63 EEQHMPGEEADGKGKKKYKVEFKQIYLSKPMVTE 96 [26][TOP] >UniRef100_Q1WMR3 DNA-directed RNA polymerase n=1 Tax=Coprinellus disseminatus RepID=Q1WMR3_COPDI Length = 1241 Score = 85.9 bits (211), Expect = 1e-15 Identities = 46/95 (48%), Positives = 65/95 (68%) Frame = +2 Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355 G+D++ +D A+I+ ED W VI ++FD+ GLVRQQL S++EFV TMQ LVDE+ D++L Sbjct: 36 GMDDDGDD--FAEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLIL 93 Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 DQ+ G D D + IKFGQ+ +S+P TE Sbjct: 94 DQADQHT-GHDT-DMTRRYEIKFGQIYLSRPTVTE 126 [27][TOP] >UniRef100_A8PVJ8 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PVJ8_MALGO Length = 1197 Score = 85.5 bits (210), Expect = 2e-15 Identities = 43/90 (47%), Positives = 60/90 (66%) Frame = +2 Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370 YED +IS ED W+VI A+F+E GLVRQQ+ S+NEF+S T+Q LV+ES + L DQ Sbjct: 2 YEDEGVEEISQEDCWDVIKAFFEEKGLVRQQIDSFNEFMSNTVQELVEESKSLTLEQSDQ 61 Query: 371 YVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + A D+ + I+FGQ+ ++KP TE Sbjct: 62 HT--GQAEDKTRRYEIEFGQIYMNKPQQTE 89 [28][TOP] >UniRef100_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8PJ53_COPC7 Length = 742 Score = 85.5 bits (210), Expect = 2e-15 Identities = 46/92 (50%), Positives = 62/92 (67%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 EEY D + A I+ ED W VI+++FD+ GLVRQQL S++EFV TMQ LVDE+ D++L Sbjct: 20 EEY-DEDYAPITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQA 78 Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 DQ+ A D + IKFGQ+ +S+P TE Sbjct: 79 DQHT--GQAGDMTRRYEIKFGQIYLSRPTVTE 108 [29][TOP] >UniRef100_A8N2R8 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N2R8_COPC7 Length = 1222 Score = 85.5 bits (210), Expect = 2e-15 Identities = 46/92 (50%), Positives = 62/92 (67%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 EEY D + A I+ ED W VI+++FD+ GLVRQQL S++EFV TMQ LVDE+ D++L Sbjct: 20 EEY-DEDYAPITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQA 78 Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 DQ+ A D + IKFGQ+ +S+P TE Sbjct: 79 DQHT--GQAGDMTRRYEIKFGQIYLSRPTVTE 108 [30][TOP] >UniRef100_B7FVG3 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVG3_PHATR Length = 1212 Score = 84.3 bits (207), Expect = 4e-15 Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 8/100 (8%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 +E D ++ ++ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ LVD+S DI + PE Sbjct: 16 DEVMDIDEIPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPE 75 Query: 365 DQYVPGRD------APDENTKVV--IKFGQLRVSKPNFTE 460 Q++ G D ++ TK V I FGQ+ +SKP E Sbjct: 76 IQHMVGYDDEAYDREQEKETKFVFEIHFGQVYLSKPTTVE 115 [31][TOP] >UniRef100_Q4Y5W4 DNA-directed RNA polymerase II second largest subunit, putative (Fragment) n=1 Tax=Plasmodium chabaudi RepID=Q4Y5W4_PLACH Length = 727 Score = 84.3 bits (207), Expect = 4e-15 Identities = 41/97 (42%), Positives = 64/97 (65%), Gaps = 2/97 (2%) Frame = +2 Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355 G+++ + +D I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P I + Sbjct: 18 GIEDLSDKDDDDQINEEDSWVVIGSFFG-HGLVNQQIESYNDFIEYRMQEIIDEHPHIEI 76 Query: 356 IPEDQYVPGRDAPDENTKVV--IKFGQLRVSKPNFTE 460 P+ QY P + DENT ++ +KFGQL + +P F E Sbjct: 77 KPQPQYRPDK---DENTNIIYSLKFGQLSLDRPFFDE 110 [32][TOP] >UniRef100_UPI00017937B7 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide n=1 Tax=Acyrthosiphon pisum RepID=UPI00017937B7 Length = 1101 Score = 83.6 bits (205), Expect = 6e-15 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 5/103 (4%) Frame = +2 Query: 167 VYNGVDEEYEDPNDA-DISAE----DAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLV 331 +Y+ D+EYE+ + DIS+E W VIN+YFDE GLVRQQL S++EF+ +++QR+V Sbjct: 1 MYDLGDDEYEEEEETEDISSELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIV 60 Query: 332 DESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 ++SP I L E Q+ G D TK IKF Q+ +SKP E Sbjct: 61 EDSPQIELQAESQHTHGE--IDTPTKYQIKFEQIYLSKPTHWE 101 [33][TOP] >UniRef100_B6AET6 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AET6_9CRYT Length = 1184 Score = 83.6 bits (205), Expect = 6e-15 Identities = 38/85 (44%), Positives = 57/85 (67%) Frame = +2 Query: 206 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 385 D ++ ED+W +I YF + GLV QQL+S+N+F+ +Q +VDE P IV+IP+ QY P Sbjct: 7 DDEVQQEDSWALIGTYFRDRGLVSQQLESFNDFIMYKLQEIVDEHPPIVIIPQPQYRPDE 66 Query: 386 DAPDENTKVVIKFGQLRVSKPNFTE 460 D + + V+KFGQL +S+P+ E Sbjct: 67 QI-DTSIQYVLKFGQLSLSRPSVEE 90 [34][TOP] >UniRef100_Q67XZ1 DNA-directed RNA polymerase II second largest chain n=1 Tax=Arabidopsis thaliana RepID=Q67XZ1_ARATH Length = 124 Score = 83.2 bits (204), Expect = 8e-15 Identities = 39/74 (52%), Positives = 52/74 (70%) Frame = +2 Query: 170 YNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 Y + ED +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI Sbjct: 6 YEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 65 Query: 350 VLIPEDQYVPGRDA 391 + PE Q+ PG + Sbjct: 66 EIRPESQHNPGHQS 79 [35][TOP] >UniRef100_B6TQP3 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B6TQP3_MAIZE Length = 126 Score = 83.2 bits (204), Expect = 8e-15 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 6/89 (6%) Frame = +2 Query: 143 SDSGNEDGVYNGVDEEYEDPNDAD------ISAEDAWEVINAYFDEHGLVRQQLQSYNEF 304 ++ +E G G EE ++ D D I+ +DAW VI+AYF+E GLVRQQL S++EF Sbjct: 29 AEEDDEVGYGGGGGEEMDEDADGDAEQQEDITQDDAWAVISAYFEEKGLVRQQLDSFDEF 88 Query: 305 VSVTMQRLVDESPDIVLIPEDQYVPGRDA 391 + TMQ +VDES DI + PE Q+ PGR A Sbjct: 89 IQNTMQEIVDESADIEIRPESQHNPGRQA 117 [36][TOP] >UniRef100_A5KBW7 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax RepID=A5KBW7_PLAVI Length = 1339 Score = 83.2 bits (204), Expect = 8e-15 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 2/101 (1%) Frame = +2 Query: 164 GVYNGVDEEYEDPNDAD--ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337 G Y D E+ ++ + I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE Sbjct: 12 GEYMHADAPLEEDHEEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDE 71 Query: 338 SPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 P I + P+ QY RD ++N +KFGQL + +P + E Sbjct: 72 HPQIEIRPQPQYRSDRD-DNKNVMYALKFGQLSLDRPFYDE 111 [37][TOP] >UniRef100_B8C598 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C598_THAPS Length = 1196 Score = 82.8 bits (203), Expect = 1e-14 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 8/96 (8%) Frame = +2 Query: 197 DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYV 376 D +D ++ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ LVD+S I + PE Q++ Sbjct: 2 DLDDMPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHL 61 Query: 377 PGRD------APDENTKVV--IKFGQLRVSKPNFTE 460 G D + TK V +KFGQ+ +SKP E Sbjct: 62 VGYDEANFDETMNSTTKKVFEVKFGQVYLSKPTTVE 97 [38][TOP] >UniRef100_Q5CY45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium parvum Iowa II RepID=Q5CY45_CRYPV Length = 1177 Score = 82.8 bits (203), Expect = 1e-14 Identities = 39/89 (43%), Positives = 57/89 (64%) Frame = +2 Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373 E ND +I ED+W +I YF + GLV QQL+S+N+F+ +Q +VDE P I++ P+ QY Sbjct: 10 EQKND-EIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQY 68 Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 P D + V+KFGQL +S+P+ E Sbjct: 69 RPDEQI-DTKVRYVLKFGQLSLSRPSVEE 96 [39][TOP] >UniRef100_Q5CN11 DNA-directed RNA polymerase II second largest chain n=1 Tax=Cryptosporidium hominis RepID=Q5CN11_CRYHO Length = 733 Score = 82.8 bits (203), Expect = 1e-14 Identities = 39/89 (43%), Positives = 57/89 (64%) Frame = +2 Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373 E ND +I ED+W +I YF + GLV QQL+S+N+F+ +Q +VDE P I++ P+ QY Sbjct: 10 EQKND-EIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQY 68 Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 P D + V+KFGQL +S+P+ E Sbjct: 69 RPDEQI-DTKVRYVLKFGQLSLSRPSVEE 96 [40][TOP] >UniRef100_Q5KIB7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans RepID=Q5KIB7_CRYNE Length = 1193 Score = 82.8 bits (203), Expect = 1e-14 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 4/115 (3%) Frame = +2 Query: 128 PLYDMSDS----GNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSY 295 P YD S G+ED +E+Y+ D IS ED W VIN++F+E GLVRQQL+S+ Sbjct: 22 PDYDYSQQTAPKGDED------EEKYDVDEDEPISQEDYWTVINSFFEEKGLVRQQLESF 75 Query: 296 NEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 NEF+ TMQ +VD+ + L QY A DE + I FGQ+ +++ N TE Sbjct: 76 NEFIENTMQEIVDDHSRLTLDQFTQYT--GVAGDETRRYEISFGQIYLARVNHTE 128 [41][TOP] >UniRef100_Q55U25 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans RepID=Q55U25_CRYNE Length = 1245 Score = 82.8 bits (203), Expect = 1e-14 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 4/115 (3%) Frame = +2 Query: 128 PLYDMSDS----GNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSY 295 P YD S G+ED +E+Y+ D IS ED W VIN++F+E GLVRQQL+S+ Sbjct: 21 PDYDYSQQTAPKGDED------EEKYDVDEDEPISQEDYWTVINSFFEEKGLVRQQLESF 74 Query: 296 NEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 NEF+ TMQ +VD+ + L QY A DE + I FGQ+ +++ N TE Sbjct: 75 NEFIENTMQEIVDDHSRLTLDQFTQYT--GVAGDETRRYEISFGQIYLARVNHTE 127 [42][TOP] >UniRef100_Q4U9X1 DNA-directed RNA polymerase n=1 Tax=Theileria annulata RepID=Q4U9X1_THEAN Length = 1223 Score = 81.6 bits (200), Expect = 2e-14 Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 1/92 (1%) Frame = +2 Query: 188 EYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPED 367 +Y +D + + ED W+VI ++F+EHGLV QQ++S+N+F++ MQ ++D P I + P+ Sbjct: 47 QYLKRDDENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPPIEITPQP 106 Query: 368 QYVPGRDAPDENTKVV-IKFGQLRVSKPNFTE 460 Y P + EN+ V +KFGQL +SKP+ E Sbjct: 107 NYRPEEEV--ENSVVYKLKFGQLSLSKPSVEE 136 [43][TOP] >UniRef100_UPI00015B44D8 PREDICTED: similar to ENSANGP00000011389 n=1 Tax=Nasonia vitripennis RepID=UPI00015B44D8 Length = 1175 Score = 81.3 bits (199), Expect = 3e-14 Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 4/97 (4%) Frame = +2 Query: 182 DEEYEDPNDADISA----EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 +E YED + +IS+ E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ESP I Sbjct: 6 EEHYEDDDSEEISSKVWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEESPQI 65 Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G + T+ ++KF Q+ +SKP E Sbjct: 66 DLQAEAQHRTG--DIETPTRHLVKFEQIYLSKPTHWE 100 [44][TOP] >UniRef100_UPI0000221AC5 hypothetical protein CBG18197 n=1 Tax=Caenorhabditis briggsae AF16 RepID=UPI0000221AC5 Length = 1194 Score = 81.3 bits (199), Expect = 3e-14 Identities = 50/109 (45%), Positives = 69/109 (63%), Gaps = 4/109 (3%) Frame = +2 Query: 146 DSGNEDGVYNGVDEEYEDPNDADISA----EDAWEVINAYFDEHGLVRQQLQSYNEFVSV 313 D G +D +G DEEY D A+IS E W VI+AYFDE GLVRQQL S++EFV + Sbjct: 6 DDGMQD---DGNDEEYSDET-AEISPDAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQM 61 Query: 314 TMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +QR+V++SP + L E+Q++ G D + K +KF Q+ +SKP E Sbjct: 62 NVQRIVEDSPPVELQSENQHL-GNDM-ENPAKFSLKFNQIYLSKPTHWE 108 [45][TOP] >UniRef100_B0WKE9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus RepID=B0WKE9_CULQU Length = 1176 Score = 80.9 bits (198), Expect = 4e-14 Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Frame = +2 Query: 155 NEDGVYNGVDEEYEDPNDA--DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRL 328 NEDG + E EDP + ++ E W VINAYFDE GLVRQQL S++EF+ +++QR+ Sbjct: 4 NEDGDHF----EEEDPEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRI 59 Query: 329 VDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 V++SP I L E Q+ G + T+ V+KF Q+ +SKP E Sbjct: 60 VEDSPAIELTAEAQHTTG--DIETPTRYVLKFDQIYLSKPTHWE 101 [46][TOP] >UniRef100_Q27826 DNA-directed RNA polymerase n=1 Tax=Euplotes octocarinatus RepID=Q27826_EUPOC Length = 1194 Score = 80.5 bits (197), Expect = 5e-14 Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 2/106 (1%) Frame = +2 Query: 149 SGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRL 328 SG YN +++ D +I+ EDAW VI AYFD+HGLV QQ+ S++ F+S T+Q + Sbjct: 14 SGGRGDYYN----QHKMDIDDEITQEDAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDI 69 Query: 329 VDESPDIVLIPEDQYVPG-RDAPDENTKVVIKFGQLRVS-KPNFTE 460 V E+ I + PE Q+ PG + EN K I GQ+RV+ KP F E Sbjct: 70 VTENNTISIQPELQFAPGSMNESRENIKYDIILGQVRVNEKPRFKE 115 [47][TOP] >UniRef100_Q4N2K9 DNA-directed RNA polymerase n=1 Tax=Theileria parva RepID=Q4N2K9_THEPA Length = 1190 Score = 80.1 bits (196), Expect = 7e-14 Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 1/112 (0%) Frame = +2 Query: 128 PLYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFV 307 P YD+ + VDE + + ED W+VI ++F+EHGLV QQ++S+N+F+ Sbjct: 35 PKYDIDQDLDHSQYLKAVDENFTE--------EDTWKVIGSFFNEHGLVHQQIESFNDFI 86 Query: 308 SVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV-IKFGQLRVSKPNFTE 460 + MQ ++D P I + P+ Y P + +EN+ + +KFGQL ++KP+ E Sbjct: 87 TYRMQEIIDAHPPIEITPQPNYRP--EEEEENSILYRLKFGQLSLNKPSVEE 136 [48][TOP] >UniRef100_O96236 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7 RepID=O96236_PLAF7 Length = 1340 Score = 79.7 bits (195), Expect = 9e-14 Identities = 38/89 (42%), Positives = 58/89 (65%) Frame = +2 Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373 ++PN+ I+ +D+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P I + P+ QY Sbjct: 25 KNPNE-QITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQY 83 Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 RD D N +KFGQL + +P + E Sbjct: 84 RTDRDEND-NIIYSLKFGQLSLDRPFYDE 111 [49][TOP] >UniRef100_B4R0H5 DNA-directed RNA polymerase n=1 Tax=Drosophila simulans RepID=B4R0H5_DROSI Length = 1176 Score = 79.3 bits (194), Expect = 1e-13 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y+ +E YE+ N +IS E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 2 MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + + +KF Q+ +SKP E Sbjct: 62 DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101 [50][TOP] >UniRef100_B4PTC0 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba RepID=B4PTC0_DROYA Length = 1176 Score = 79.3 bits (194), Expect = 1e-13 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y+ +E YE+ N +IS E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 2 MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + + +KF Q+ +SKP E Sbjct: 62 DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101 [51][TOP] >UniRef100_B4N9I3 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni RepID=B4N9I3_DROWI Length = 1176 Score = 79.3 bits (194), Expect = 1e-13 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y+ +E YE+ N +IS E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 2 MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + + +KF Q+ +SKP E Sbjct: 62 DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101 [52][TOP] >UniRef100_B3P0M0 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta RepID=B3P0M0_DROER Length = 1176 Score = 79.3 bits (194), Expect = 1e-13 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y+ +E YE+ N +IS E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 2 MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + + +KF Q+ +SKP E Sbjct: 62 DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101 [53][TOP] >UniRef100_B3LYR3 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae RepID=B3LYR3_DROAN Length = 1176 Score = 79.3 bits (194), Expect = 1e-13 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y+ +E YE+ N +IS E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 2 MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + + +KF Q+ +SKP E Sbjct: 62 DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101 [54][TOP] >UniRef100_P08266 DNA-directed RNA polymerase II subunit RPB2 n=2 Tax=melanogaster subgroup RepID=RPB2_DROME Length = 1176 Score = 79.3 bits (194), Expect = 1e-13 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y+ +E YE+ N +IS E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 2 MYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + + +KF Q+ +SKP E Sbjct: 62 DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101 [55][TOP] >UniRef100_UPI0000D5712C PREDICTED: similar to AGAP003648-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D5712C Length = 1175 Score = 79.0 bits (193), Expect = 2e-13 Identities = 41/102 (40%), Positives = 66/102 (64%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADISAE----DAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y +++++D +IS+E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 1 MYEQDEDQFDDEESEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + ++ ++KF Q+ +SKP E Sbjct: 61 DSPQIDLQAEAQHTSGE--LENPSRYLLKFEQIYLSKPTHWE 100 [56][TOP] >UniRef100_B2ADP9 DNA-directed RNA polymerase n=2 Tax=Podospora anserina RepID=B2ADP9_PODAN Length = 1278 Score = 79.0 bits (193), Expect = 2e-13 Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%) Frame = +2 Query: 146 DSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQR 325 D ++D Y DE D ++A I+ ED W+VI+AYFD GLV QQ+ S++EF S T+Q Sbjct: 16 DEFDDDNNYENGDELGVDQDEAAITPEDCWDVISAYFDMKGLVSQQIDSFDEFTSSTIQS 75 Query: 326 LVDESPDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460 LVDE D+ L D PG D + + I FG + +SKP TE Sbjct: 76 LVDEYADLTL---DHPNPGDDQGRDIALRRYDIHFGNVMISKPTLTE 119 [57][TOP] >UniRef100_UPI0001926137 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926137 Length = 1426 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/110 (40%), Positives = 68/110 (61%) Frame = +2 Query: 131 LYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVS 310 +YD D +D Y+ +E+ D ++ E W VI++YF+E GLVRQQL S++EF+ Sbjct: 1 MYDPIDE--DDDHYDNTEED--DEISKELWQEACWTVISSYFEEKGLVRQQLDSFDEFIQ 56 Query: 311 VTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +++QR+V+ESP I L E QY + +E T+ +KF Q+ +SKP E Sbjct: 57 MSVQRIVEESPPIELQAETQYT--ENEIEEPTRYQLKFEQIYLSKPTHWE 104 [58][TOP] >UniRef100_Q7QAK7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7QAK7_ANOGA Length = 1175 Score = 78.6 bits (192), Expect = 2e-13 Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 2/93 (2%) Frame = +2 Query: 188 EYEDPNDA--DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 E EDP + ++ E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L Sbjct: 10 EEEDPEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTA 69 Query: 362 EDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 E Q+ G + T+ ++KF Q+ +SKP E Sbjct: 70 EAQHSSGE--IENPTRYLLKFDQIYLSKPTHWE 100 [59][TOP] >UniRef100_Q10578 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Caenorhabditis elegans RepID=RPB2_CAEEL Length = 1193 Score = 78.6 bits (192), Expect = 2e-13 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 11/109 (10%) Frame = +2 Query: 167 VYNGVDEEYEDPNDAD-------ISAED----AWEVINAYFDEHGLVRQQLQSYNEFVSV 313 +Y+ DE DP D D ISAE W VI+AYFDE GLVRQQL S++EFV + Sbjct: 1 MYDDEDEMVNDPMDGDYIDDSDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQM 60 Query: 314 TMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +QR+V++SP + L E+Q++ G D + K +KF Q+ +SKP E Sbjct: 61 NVQRIVEDSPPVELQSENQHL-GTDM-ENPAKFSLKFNQIYLSKPTHWE 107 [60][TOP] >UniRef100_B4K015 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi RepID=B4K015_DROGR Length = 1175 Score = 78.2 bits (191), Expect = 3e-13 Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y +E +E+ N +IS E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 1 MYENEEENFEEENVEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + + +KF Q+ +SKP E Sbjct: 61 DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 100 [61][TOP] >UniRef100_B4KDW5 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis RepID=B4KDW5_DROMO Length = 1176 Score = 77.8 bits (190), Expect = 3e-13 Identities = 42/102 (41%), Positives = 64/102 (62%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y+ +E +++ N +IS E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 2 MYDNEEENFDEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + + +KF Q+ +SKP E Sbjct: 62 DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101 [62][TOP] >UniRef100_Q298X6 DNA-directed RNA polymerase n=2 Tax=pseudoobscura subgroup RepID=Q298X6_DROPS Length = 1176 Score = 77.8 bits (190), Expect = 3e-13 Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y+ +E +E+ N +IS E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 2 MYDNEEELFEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + + +KF Q+ +SKP E Sbjct: 62 DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101 [63][TOP] >UniRef100_B3L0J5 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H RepID=B3L0J5_PLAKH Length = 1371 Score = 77.8 bits (190), Expect = 3e-13 Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 2/96 (2%) Frame = +2 Query: 179 VDEEYEDPNDAD--ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 +D E+ +D + I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P + Sbjct: 58 IDAPLEEDHDEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPALE 117 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + P+ QY D +N +KFGQL + +P + E Sbjct: 118 IRPQAQYRSEGD-EQKNVMYALKFGQLSLDRPFYDE 152 [64][TOP] >UniRef100_B4M040 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis RepID=B4M040_DROVI Length = 1176 Score = 77.4 bits (189), Expect = 5e-13 Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 4/102 (3%) Frame = +2 Query: 167 VYNGVDEEYEDPNDADIS----AEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVD 334 +Y +E +++ N +IS E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ Sbjct: 2 MYENEEENFDEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61 Query: 335 ESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +SP I L E Q+ G + + +KF Q+ +SKP E Sbjct: 62 DSPAIELQAEAQHTSGE--VETPPRFSLKFEQIYLSKPTHWE 101 [65][TOP] >UniRef100_Q6RYH8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Filobasidiella neoformans RepID=Q6RYH8_CRYNE Length = 1114 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/90 (44%), Positives = 56/90 (62%) Frame = +2 Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370 Y+ +D IS ED W V N++F+E GLVRQQL+S+NEF+ TMQ +VD+ + L Q Sbjct: 32 YDVDDDEPISQEDYWTVTNSFFEEKGLVRQQLESFNEFIETTMQEIVDDHSRLTLDQFTQ 91 Query: 371 YVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Y A DE + I FGQ+ +++ N TE Sbjct: 92 YT--GVAGDETRRYEISFGQIYLARVNHTE 119 [66][TOP] >UniRef100_Q6CAD6 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CAD6_YARLI Length = 1229 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 4/95 (4%) Frame = +2 Query: 188 EYEDP----NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355 EYEDP D +I+AED W VI+++F+E GLV QQL S++EF+ T+Q LV E ++L Sbjct: 3 EYEDPYGYYEDTEITAEDCWTVISSFFNEKGLVSQQLDSFDEFIETTIQELVWEDRTLIL 62 Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q+ D ++N + I FG++ +S+P TE Sbjct: 63 DQPAQHTTPND--NQNKRFEITFGKIYLSRPTMTE 95 [67][TOP] >UniRef100_A1D971 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D971_NEOFI Length = 1255 Score = 77.4 bits (189), Expect = 5e-13 Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 +EE+ D + I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L Sbjct: 9 EEEFYDEMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66 Query: 362 EDQYVPGRDAPDENTKVV-----IKFGQLRVSKPNFTE 460 DQ +P D DE+ VV +KFG + +S+P+ TE Sbjct: 67 -DQTLPPSD--DEDDPVVLRRYELKFGTVMLSRPSVTE 101 [68][TOP] >UniRef100_C1ML14 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1ML14_9CHLO Length = 1172 Score = 77.0 bits (188), Expect = 6e-13 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Frame = +2 Query: 197 DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRL-VDESPDIVLIPEDQY 373 + D +I EDAW VI+++F+E GL RQQL S+NEF+ MQ + VDE L PE Q+ Sbjct: 7 EEEDEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHAMQEIVVDEMSSFELEPEQQH 66 Query: 374 VPGRDAPDENTKVV-IKFGQLRVSKPNFTE 460 VPG + K I F Q+ +SKP TE Sbjct: 67 VPGEEGEGGEKKTYKISFKQIYLSKPMVTE 96 [69][TOP] >UniRef100_A7ATA0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7ATA0_BABBO Length = 1207 Score = 77.0 bits (188), Expect = 6e-13 Identities = 34/75 (45%), Positives = 52/75 (69%) Frame = +2 Query: 224 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 403 ED+W+VI ++F+ HGLV QQ++S+N+FV+ MQ +D+ P I + P+ QY P D + N Sbjct: 59 EDSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETIDQHPPIEITPQPQYHP-EDERENN 117 Query: 404 TKVVIKFGQLRVSKP 448 +KFGQL ++KP Sbjct: 118 IVYKLKFGQLSLNKP 132 [70][TOP] >UniRef100_UPI000155BCC7 PREDICTED: similar to RNA polymerase II 140 kDa subunit, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BCC7 Length = 951 Score = 76.6 bits (187), Expect = 8e-13 Identities = 40/97 (41%), Positives = 64/97 (65%), Gaps = 3/97 (3%) Frame = +2 Query: 179 VDEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 VD +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 6 VDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65 Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 66 DLQAEAQHATGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [71][TOP] >UniRef100_B3S2W9 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S2W9_TRIAD Length = 1196 Score = 76.6 bits (187), Expect = 8e-13 Identities = 39/98 (39%), Positives = 63/98 (64%), Gaps = 1/98 (1%) Frame = +2 Query: 170 YNGVDEEYEDPN-DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPD 346 Y+ D+ +D + D+ E W VINAYF+E GLVRQQL S++EF+ +++QR+V++SP Sbjct: 7 YDLTDQPIDDDEIETDLWQEACWVVINAYFNEKGLVRQQLDSFDEFIQMSVQRIVEDSPQ 66 Query: 347 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 I + E Q+ + ++ + +KF Q+ +SKP F E Sbjct: 67 IDIQGETQHHSSEE--QQSVRYQLKFDQIYLSKPTFWE 102 [72][TOP] >UniRef100_Q2VA54 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q2VA54_PHANO Length = 1262 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E+YED +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Sbjct: 10 EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69 Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460 Y P D+ P + IKFG++ +++P TE Sbjct: 70 TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102 [73][TOP] >UniRef100_Q1HDK3 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria sp. S-93-48 RepID=Q1HDK3_9PLEO Length = 1262 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E+YED +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Sbjct: 10 EDYEDEEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69 Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460 Y P D+ P + IKFG++ +++P TE Sbjct: 70 TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102 [74][TOP] >UniRef100_Q1HDK2 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp. triticae RepID=Q1HDK2_9PLEO Length = 1262 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E+YED +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Sbjct: 10 EDYEDEEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69 Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460 Y P D+ P + IKFG++ +++P TE Sbjct: 70 TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102 [75][TOP] >UniRef100_Q1HDK1 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp. triticae RepID=Q1HDK1_9PLEO Length = 1262 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E+YED +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Sbjct: 10 EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69 Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460 Y P D+ P + IKFG++ +++P TE Sbjct: 70 TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102 [76][TOP] >UniRef100_Q1HDJ9 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp. triticae RepID=Q1HDJ9_9PLEO Length = 1262 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E+YED +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Sbjct: 10 EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69 Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460 Y P D+ P + IKFG++ +++P TE Sbjct: 70 TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102 [77][TOP] >UniRef100_Q1HDJ8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q1HDJ8_PHANO Length = 1262 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E+YED +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Sbjct: 10 EDYEDEEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69 Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460 Y P D+ P + IKFG++ +++P TE Sbjct: 70 TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102 [78][TOP] >UniRef100_Q1HDI7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp. avenaria RepID=Q1HDI7_9PLEO Length = 1262 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E+YED +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Sbjct: 10 EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69 Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460 Y P D+ P + IKFG++ +++P TE Sbjct: 70 TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102 [79][TOP] >UniRef100_Q1HDI5 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp. avenaria RepID=Q1HDI5_9PLEO Length = 1262 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E+YED +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Sbjct: 10 EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69 Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460 Y P D+ P + IKFG++ +++P TE Sbjct: 70 TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102 [80][TOP] >UniRef100_Q0U9V8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q0U9V8_PHANO Length = 1252 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E+YED +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Sbjct: 10 EDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQN 69 Query: 365 DQYVPGRDA-PDENTKVVIKFGQLRVSKPNFTE 460 Y P D+ P + IKFG++ +++P TE Sbjct: 70 TPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTE 102 [81][TOP] >UniRef100_B6HM08 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HM08_PENCW Length = 1255 Score = 76.6 bits (187), Expect = 8e-13 Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 +E++ D D I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E +VL Sbjct: 9 EEDFYDEADEGITSEDCWTVISSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVL-- 66 Query: 362 EDQYVPGRDAPDENTKVVI-----KFGQLRVSKPNFTE 460 DQ +P + DE +V+ KFG + +S+P+ TE Sbjct: 67 -DQTLP--PSEDEIEPIVVRRYELKFGTVMLSRPSVTE 101 [82][TOP] >UniRef100_A2QYC2 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QYC2_ASPNC Length = 1256 Score = 76.6 bits (187), Expect = 8e-13 Identities = 43/98 (43%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 ++EY D D I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L Sbjct: 9 EDEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66 Query: 362 EDQYVPGRDAPDENTKVVI-----KFGQLRVSKPNFTE 460 DQ +P + DE VV+ KFG + +S+P+ TE Sbjct: 67 -DQTLP--PSEDEVDPVVVRRYELKFGTVMLSRPSVTE 101 [83][TOP] >UniRef100_P90631 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Moneuplotes crassus RepID=P90631_EUPCR Length = 205 Score = 76.3 bits (186), Expect = 1e-12 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 10/98 (10%) Frame = +2 Query: 197 DP-NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373 DP N +I+ EDAW +I AYF +HGLV QQ+ S++ F+S T+Q +V E+ + ++PE QY Sbjct: 2 DPDNSKEITQEDAWALIKAYFQQHGLVSQQISSFDRFLSYTIQDIVAENSIMSIVPEKQY 61 Query: 374 VP--------GRDAPDENTKVVIKFGQLRVS-KPNFTE 460 P G + D + + I+ GQ++V+ KP F E Sbjct: 62 APGVRLYLTLGNENQDRDLRYEIELGQVKVNEKPRFKE 99 [84][TOP] >UniRef100_A9BK63 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK63_9CRYP Length = 1222 Score = 76.3 bits (186), Expect = 1e-12 Identities = 36/88 (40%), Positives = 56/88 (63%) Frame = +2 Query: 197 DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYV 376 D ND I +D W ++ ++F E+ LVRQQL S+NEF+ TMQ ++D+ P IV+ E Sbjct: 4 DKNDEIIKQDDMWIILESFFKENNLVRQQLDSFNEFIQNTMQDIIDDIPPIVIKTEFDKF 63 Query: 377 PGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + ++ K++++FGQL +SKP F E Sbjct: 64 KSSET-KKSLKLILRFGQLHLSKPTFIE 90 [85][TOP] >UniRef100_A1CG49 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus RepID=A1CG49_ASPCL Length = 1257 Score = 76.3 bits (186), Expect = 1e-12 Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 +EE+ D + I++ED W VI+++FD GLV QQL S++EFVS TMQ LV+E + L Sbjct: 9 EEEFYDDMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFVSSTMQELVEEQGQVTL-- 66 Query: 362 EDQYVPGRDAPDENTKVV-----IKFGQLRVSKPNFTE 460 DQ +P D DE VV +KFG + +S+P+ TE Sbjct: 67 -DQTLPPAD--DEVDPVVLRRYELKFGTVMLSRPSVTE 101 [86][TOP] >UniRef100_UPI00006A01AA DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA polymerase II subunit B2) (DNA-directed RNA polymerase II subunit B) (RNA polymerase II subunit 2) (DNA-directed RNA polymerase II 140 kDa polypeptide). n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A01AA Length = 927 Score = 75.5 bits (184), Expect = 2e-12 Identities = 39/97 (40%), Positives = 64/97 (65%), Gaps = 3/97 (3%) Frame = +2 Query: 179 VDEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 +D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 6 LDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65 Query: 350 VLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 66 DLQAEAQHTTGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [87][TOP] >UniRef100_UPI000194C2A3 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1 Tax=Taeniopygia guttata RepID=UPI000194C2A3 Length = 1174 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [88][TOP] >UniRef100_UPI0001795E58 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB2 (RNA polymerase II subunit B2) (DNA-directed RNA polymerase II subunit B) (RNA polymerase II subunit 2) (DNA-directed RNA polymerase II 140 kDa polypeptide) n=1 Tax=Equus caballus RepID=UPI0001795E58 Length = 1174 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [89][TOP] >UniRef100_UPI0000F2D75F PREDICTED: similar to RNA polymerase II 140 kDa subunit n=1 Tax=Monodelphis domestica RepID=UPI0000F2D75F Length = 1174 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHATGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [90][TOP] >UniRef100_P30876 DNA-directed RNA polymerase II subunit RPB2 n=2 Tax=Catarrhini RepID=RPB2_HUMAN Length = 1174 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [91][TOP] >UniRef100_UPI00005A2A5C PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 16 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5C Length = 1173 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [92][TOP] >UniRef100_UPI00005A2A5B PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 15 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5B Length = 1179 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [93][TOP] >UniRef100_UPI00005A2A5A PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 14 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5A Length = 1175 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [94][TOP] >UniRef100_UPI00005A2A59 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 13 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A59 Length = 1180 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [95][TOP] >UniRef100_UPI00005A2A58 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 12 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A58 Length = 1174 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [96][TOP] >UniRef100_UPI00005A2A57 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 11 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A57 Length = 1180 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [97][TOP] >UniRef100_UPI00005A2A56 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 10 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A56 Length = 1166 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [98][TOP] >UniRef100_UPI00005A2A55 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 9 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A55 Length = 1182 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [99][TOP] >UniRef100_UPI00005A2A54 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 8 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A54 Length = 1173 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [100][TOP] >UniRef100_UPI00005A2A53 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 7 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A53 Length = 1113 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [101][TOP] >UniRef100_UPI00005A2A52 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 6 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A52 Length = 1162 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [102][TOP] >UniRef100_UPI00005A2A51 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 5 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A51 Length = 932 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [103][TOP] >UniRef100_UPI00005A2A4F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide B isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A4F Length = 193 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [104][TOP] >UniRef100_UPI0000EB23D9 DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA polymerase II subunit B2) (DNA-directed RNA polymerase II subunit B) (RNA polymerase II subunit 2) (DNA-directed RNA polymerase II 140 kDa polypeptide). n=1 Tax=Canis lupus familiaris RepID=UPI0000EB23D9 Length = 1176 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [105][TOP] >UniRef100_UPI0000F3357E UPI0000F3357E related cluster n=1 Tax=Bos taurus RepID=UPI0000F3357E Length = 1177 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 8 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 67 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 68 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 101 [106][TOP] >UniRef100_UPI0000ECC4A8 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1 Tax=Gallus gallus RepID=UPI0000ECC4A8 Length = 1176 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 8 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 67 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 68 LQAEAQHATGE--VEEPPRYLLKFEQIYLSKPTHWE 101 [107][TOP] >UniRef100_UPI00003AD7E4 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1 Tax=Gallus gallus RepID=UPI00003AD7E4 Length = 1174 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHATGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [108][TOP] >UniRef100_Q6PA46 MGC68569 protein n=1 Tax=Xenopus laevis RepID=Q6PA46_XENLA Length = 949 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHTTGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [109][TOP] >UniRef100_Q5ZMN9 DNA-directed RNA polymerase n=1 Tax=Gallus gallus RepID=Q5ZMN9_CHICK Length = 1174 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEARWIVISSYFDEEGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHATGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [110][TOP] >UniRef100_A5PJW8 DNA-directed RNA polymerase n=1 Tax=Bos taurus RepID=A5PJW8_BOVIN Length = 1174 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [111][TOP] >UniRef100_A8MW88 DNA-directed RNA polymerase (Fragment) n=1 Tax=Homo sapiens RepID=A8MW88_HUMAN Length = 1173 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 6 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 65 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 66 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 99 [112][TOP] >UniRef100_A7E6G0 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7E6G0_SCLS1 Length = 1267 Score = 75.1 bits (183), Expect = 2e-12 Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 4/95 (4%) Frame = +2 Query: 188 EYED--PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 EY+D DA I+AED W VI+++FD GLV QQ+ S++EFV TMQ LV+E+ + L Sbjct: 9 EYDDFGEEDAGITAEDCWTVISSFFDAKGLVSQQIDSFDEFVQTTMQELVEENSQLTL-- 66 Query: 362 EDQYVP--GRDAPDENTKVVIKFGQLRVSKPNFTE 460 DQ P D P + IKFG + +S+P TE Sbjct: 67 -DQNNPPSSNDNPIALRRYEIKFGTIMLSRPAMTE 100 [113][TOP] >UniRef100_Q8CFI7 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Mus musculus RepID=RPB2_MOUSE Length = 1174 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [114][TOP] >UniRef100_UPI0001B09250 DNA directed RNA polymerase II polypeptide B n=1 Tax=Danio rerio RepID=UPI0001B09250 Length = 1174 Score = 74.7 bits (182), Expect = 3e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHTSGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [115][TOP] >UniRef100_Q6DRH1 RNA polymerase II subunit B (Fragment) n=1 Tax=Danio rerio RepID=Q6DRH1_DANRE Length = 562 Score = 74.7 bits (182), Expect = 3e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHTSGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [116][TOP] >UniRef100_Q504C7 Polr2b protein n=1 Tax=Danio rerio RepID=Q504C7_DANRE Length = 366 Score = 74.7 bits (182), Expect = 3e-12 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I Sbjct: 7 DIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66 Query: 353 LIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 L E Q+ G +E + ++KF Q+ +SKP E Sbjct: 67 LQAEAQHTSGE--VEEPPRYLLKFEQIYLSKPTHWE 100 [117][TOP] >UniRef100_B4DHJ3 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4DHJ3_HUMAN Length = 1167 Score = 74.7 bits (182), Expect = 3e-12 Identities = 38/92 (41%), Positives = 60/92 (65%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 +E +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Sbjct: 4 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63 Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q+ G +E + ++KF Q+ +SKP E Sbjct: 64 AQHASGE--VEEPPRYLLKFEQIYLSKPTHRE 93 [118][TOP] >UniRef100_Q0CWW4 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624 RepID=Q0CWW4_ASPTN Length = 1256 Score = 74.7 bits (182), Expect = 3e-12 Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 ++E+ D D I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L Sbjct: 9 EDEFYDEMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66 Query: 362 EDQYVPGRDAPDENTKVV-----IKFGQLRVSKPNFTE 460 DQ +P + DE +V +KFG + +S+P+ TE Sbjct: 67 -DQTLPPNE--DEVDPIVLRRYELKFGTVMLSRPSVTE 101 [119][TOP] >UniRef100_B0YC08 DNA-directed RNA polymerase n=3 Tax=Aspergillus fumigatus RepID=B0YC08_ASPFC Length = 1255 Score = 74.7 bits (182), Expect = 3e-12 Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 5/98 (5%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 ++E+ D + I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L Sbjct: 9 EDEFYDEMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66 Query: 362 EDQYVPGRDAPDENTKVV-----IKFGQLRVSKPNFTE 460 DQ +P + DE+ VV +KFG + +S+P+ TE Sbjct: 67 -DQTLP--PSEDEDDPVVLRRYELKFGTVMLSRPSVTE 101 [120][TOP] >UniRef100_C0HA74 DNA-directed RNA polymerase n=1 Tax=Salmo salar RepID=C0HA74_SALSA Length = 1174 Score = 74.3 bits (181), Expect = 4e-12 Identities = 38/92 (41%), Positives = 60/92 (65%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 +E ED D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Sbjct: 11 DEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 70 Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q+ G ++ + ++KF Q+ +SKP E Sbjct: 71 AQHTSGE--VEDPPRYLLKFEQIYLSKPTHWE 100 [121][TOP] >UniRef100_C9J2Y9 Putative uncharacterized protein POLR2B n=1 Tax=Homo sapiens RepID=C9J2Y9_HUMAN Length = 100 Score = 74.3 bits (181), Expect = 4e-12 Identities = 38/92 (41%), Positives = 60/92 (65%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 +E +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Sbjct: 4 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63 Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q+ G +E + ++KF Q+ +SKP E Sbjct: 64 AQHASGE--VEEPPRYLLKFEQIYLSKPTHWE 93 [122][TOP] >UniRef100_A6S7C1 DNA-directed RNA polymerase n=2 Tax=Botryotinia fuckeliana RepID=A6S7C1_BOTFB Length = 1207 Score = 74.3 bits (181), Expect = 4e-12 Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 4/95 (4%) Frame = +2 Query: 188 EYED--PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 EY+D DA I+AED W VI+++F+ GLV QQL S++EFV TMQ LV+E+ + L Sbjct: 9 EYDDYGEEDAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTL-- 66 Query: 362 EDQYVP--GRDAPDENTKVVIKFGQLRVSKPNFTE 460 DQ P D P + IKFG + +S+P TE Sbjct: 67 -DQNNPPSSHDNPIALRRYEIKFGTIMLSRPAMTE 100 [123][TOP] >UniRef100_Q872W7 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa RepID=Q872W7_NEUCR Length = 1287 Score = 73.9 bits (180), Expect = 5e-12 Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 5/114 (4%) Frame = +2 Query: 134 YDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSV 313 YD D+ ++ D+ DPN I+ ED+WEVI++YFD GLV QQ+ S+NEF + Sbjct: 19 YDNDDNYENLSTFDDEDDG-SDPNA--ITPEDSWEVISSYFDLKGLVSQQIDSFNEFTTD 75 Query: 314 TMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIK-----FGQLRVSKPNFTE 460 T+Q L+DE D+ L D PG DE +++++ FG++ +S+P TE Sbjct: 76 TVQSLIDEYADLTL---DHPSPG---DDEGREIILRRYDVHFGEIIISRPTLTE 123 [124][TOP] >UniRef100_B8MU25 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MU25_TALSN Length = 1256 Score = 73.9 bits (180), Expect = 5e-12 Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 2/95 (2%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 DE YED + I++ED W VI++YFD GLV QQL S++EF+S TMQ LV+E + + Sbjct: 10 DEYYEDEEEG-ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTI-- 66 Query: 362 EDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460 + P D D + IK+G + +++P+F+E Sbjct: 67 DQTITPNEDEIDPVVIRRYEIKYGTIMLARPSFSE 101 [125][TOP] >UniRef100_B6QUV1 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QUV1_PENMQ Length = 1254 Score = 73.9 bits (180), Expect = 5e-12 Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 2/95 (2%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 DE YED + I++ED W VI++YFD GLV QQL S++EF+S TMQ LV+E + + Sbjct: 10 DEYYEDEEEG-ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTI-- 66 Query: 362 EDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460 + P D D + IK+G + +++P+F+E Sbjct: 67 DQTITPNEDEIDPVVIRRYEIKYGTIMLARPSFSE 101 [126][TOP] >UniRef100_Q6QN96 DNA-directed RNA polymerase n=1 Tax=Cochliobolus heterostrophus RepID=Q6QN96_COCHE Length = 1208 Score = 73.6 bits (179), Expect = 7e-12 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%) Frame = +2 Query: 158 EDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337 EDG+ ++YED D + ED W VI+++FD GLV QQL SY+EF T+Q +V E Sbjct: 8 EDGM-----DDYEDEEDDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKE 62 Query: 338 SPDIVLIPEDQYVPGR-DAPDENTKVVIKFGQLRVSKPNFTE 460 + ++L Y P D P + IKFG++ +++P TE Sbjct: 63 NGSVILEQNTPYNPDEDDNPIIKRRYEIKFGRVYLARPTHTE 104 [127][TOP] >UniRef100_C8VK81 DNA-directed RNA polymerase (EC 2.7.7.6) [Source:UniProtKB/TrEMBL;Acc:Q9UV95] n=2 Tax=Emericella nidulans RepID=C8VK81_EMENI Length = 1252 Score = 73.6 bits (179), Expect = 7e-12 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 5/94 (5%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 +EEY D D I++ED W VI+++FD GLV QQL S++EF+S T+Q LV+E + L Sbjct: 9 EEEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTL-- 66 Query: 362 EDQYVPGRDAPDENTKVVI-----KFGQLRVSKP 448 DQ +P + DE VV+ KFG + +S+P Sbjct: 67 -DQTIP--PSEDEVDPVVVRRYELKFGTVMLSRP 97 [128][TOP] >UniRef100_B8NK59 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=B8NK59_ASPFN Length = 1254 Score = 73.2 bits (178), Expect = 9e-12 Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 7/100 (7%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 ++E+ D + I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L Sbjct: 9 EDEFYDDMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL-- 66 Query: 362 EDQYVPGRDAPDEN-------TKVVIKFGQLRVSKPNFTE 460 DQ +P PDE+ + +KFG + +S+P+ TE Sbjct: 67 -DQTLP----PDEDEVDPVVVRRYELKFGTVMLSRPSVTE 101 [129][TOP] >UniRef100_UPI000186D6F3 DNA-directed RNA polymerase II 135 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D6F3 Length = 1175 Score = 72.8 bits (177), Expect = 1e-11 Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 5/98 (5%) Frame = +2 Query: 182 DEEYEDPNDA-----DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPD 346 +++YE+ DA ++ E W VIN+YFDE GLVRQQL S++EF+ +++QR+V+++P Sbjct: 5 EDQYENDEDAGEISSELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPI 64 Query: 347 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 I L E Q+ G + ++KF Q+ +SKP E Sbjct: 65 IDLQAEAQHASGE--IENPPHYLLKFEQIYLSKPTHWE 100 [130][TOP] >UniRef100_A8Q7K3 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8Q7K3_BRUMA Length = 1185 Score = 72.8 bits (177), Expect = 1e-11 Identities = 42/100 (42%), Positives = 61/100 (61%), Gaps = 7/100 (7%) Frame = +2 Query: 182 DEEYEDP---NDADISAED----AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340 D+E E+ D +IS+E W VI+AYFDE GLVRQQL S++EF+ + +QR+V++S Sbjct: 5 DDETEEALFEEDEEISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDS 64 Query: 341 PDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 P + L E Q+ G + K +KF Q+ +SKP E Sbjct: 65 PPVELQSEVQHFSG--DVENPIKFALKFDQIYLSKPTHWE 102 [131][TOP] >UniRef100_A5DVP4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus RepID=A5DVP4_LODEL Length = 1238 Score = 72.8 bits (177), Expect = 1e-11 Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 7/100 (7%) Frame = +2 Query: 182 DEEYEDPN--DADISA-----EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340 D+E +DP DAD+ A ED W VI+++F E GLV QQL S++EF+ T+Q LV E Sbjct: 4 DQEMDDPYMYDADVEAQNITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWED 63 Query: 341 PDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 ++L Q+ +D +N + I FG++ +SKP TE Sbjct: 64 SHLILDQPAQHTSEKD--HDNKRYEINFGKIYISKPTQTE 101 [132][TOP] >UniRef100_Q753Q4 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Eremothecium gossypii RepID=RPB2_ASHGO Length = 1222 Score = 72.8 bits (177), Expect = 1e-11 Identities = 37/89 (41%), Positives = 59/89 (66%) Frame = +2 Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373 +D DA I+AED+W VI+A+F E GLV QQL S+N+F++ T+Q L+ E ++L Q+ Sbjct: 14 DDDEDAPITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQH 73 Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +A + + K I FG++ ++KP+ TE Sbjct: 74 T--TEADNISRKYEISFGKIYLAKPSMTE 100 [133][TOP] >UniRef100_A7SHD8 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis RepID=A7SHD8_NEMVE Length = 1182 Score = 72.4 bits (176), Expect = 1e-11 Identities = 38/95 (40%), Positives = 60/95 (63%) Frame = +2 Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355 G E+ + D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP+I L Sbjct: 12 GYGEDEGEDITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPEIDL 71 Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 E Q++ + + V+KF Q+ +SKP E Sbjct: 72 QAESQHM--TSDTEIPARFVLKFEQIYLSKPTHWE 104 [134][TOP] >UniRef100_C5FJF0 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480 RepID=C5FJF0_NANOT Length = 1258 Score = 72.4 bits (176), Expect = 1e-11 Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 5/98 (5%) Frame = +2 Query: 182 DEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIP 361 D+ Y + + I++ED W VI+A+F+ GLV QQL S++EF+S TMQ LV+E + L Sbjct: 9 DDVYYEAEEG-ITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL-- 65 Query: 362 EDQYVPGRDAPDENTKVV-----IKFGQLRVSKPNFTE 460 DQ VP D DE VV +KFG + +++P+ TE Sbjct: 66 -DQTVPPGD--DEQDPVVLRRYELKFGTVMLARPSMTE 100 [135][TOP] >UniRef100_C4JKI6 DNA-directed RNA polymerase II 138 kDa polypeptide n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JKI6_UNCRE Length = 884 Score = 72.0 bits (175), Expect = 2e-11 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 10/102 (9%) Frame = +2 Query: 185 EEYEDPNDAD--------ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340 EEYED D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E Sbjct: 2 EEYEDEYGEDGYYEAEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQ 61 Query: 341 PDIVLIPEDQYVPGRDAPDE--NTKVVIKFGQLRVSKPNFTE 460 + L + P D PD + +KFG + +++P+ TE Sbjct: 62 GQVTL--DQTIAPEEDDPDPVLVRRYELKFGTVMLARPSMTE 101 [136][TOP] >UniRef100_B7QNH8 DNA-directed RNA polymerase n=1 Tax=Ixodes scapularis RepID=B7QNH8_IXOSC Length = 1142 Score = 71.6 bits (174), Expect = 3e-11 Identities = 37/92 (40%), Positives = 58/92 (63%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E+ + D+ E W VI+AYFDE GLVRQQL S++EF+ +++QR+V+++P I L E Sbjct: 11 EDESEEITPDLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAE 70 Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q+ G + + ++KF Q+ +SKP E Sbjct: 71 AQHASGE--IENPPRYLLKFEQIYLSKPTHWE 100 [137][TOP] >UniRef100_A8XS50 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae RepID=A8XS50_CAEBR Length = 1215 Score = 71.6 bits (174), Expect = 3e-11 Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 19/124 (15%) Frame = +2 Query: 146 DSGNEDGVYNGVDEEYEDPNDADISA----EDAWEVINAYFDE---------------HG 268 D G +D +G DEEY D A+IS E W VI+AYFDE G Sbjct: 12 DDGMQD---DGNDEEYSDET-AEISPDAWQEACWVVISAYFDEKVNFGFFLIKTICMFQG 67 Query: 269 LVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKP 448 LVRQQL S++EFV + +QR+V++SP + L E+Q++ G D + K +KF Q+ +SKP Sbjct: 68 LVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHL-GNDM-ENPAKFSLKFNQIYLSKP 125 Query: 449 NFTE 460 E Sbjct: 126 THWE 129 [138][TOP] >UniRef100_C9SGY6 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SGY6_9PEZI Length = 1260 Score = 71.6 bits (174), Expect = 3e-11 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 2/109 (1%) Frame = +2 Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319 M+ +E+ Y+G +E+ DA I+ ED W VI+++FD GLV QQ+ S++EF + T+ Sbjct: 1 MATEYDEEFDYDGYEED-----DASITPEDCWTVISSFFDSKGLVSQQVDSFDEFTTSTV 55 Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460 Q L+DE I L DQ P D+ + +KFG + VS+P+ TE Sbjct: 56 QELIDEYSHITL---DQPNPASDSDRAIALRRYEVKFGTVMVSRPSITE 101 [139][TOP] >UniRef100_C5PAW2 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta SOWgp RepID=C5PAW2_COCP7 Length = 1258 Score = 71.6 bits (174), Expect = 3e-11 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 2/112 (1%) Frame = +2 Query: 131 LYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVS 310 + + D EDG Y + I++ED W VI+++F+ GLV QQL S++EF+S Sbjct: 1 MQEYEDEYGEDGYYEA---------EEGITSEDCWTVISSFFESKGLVSQQLDSFDEFIS 51 Query: 311 VTMQRLVDESPDIVLIPEDQYVPGRDAPDE--NTKVVIKFGQLRVSKPNFTE 460 TMQ LV+E + L + P D PD + +KFG + +++P+ TE Sbjct: 52 TTMQELVEEQGQVTL--DQTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTE 101 [140][TOP] >UniRef100_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4 Tax=Saccharomyces cerevisiae RepID=RPB2_YEAST Length = 1224 Score = 71.6 bits (174), Expect = 3e-11 Identities = 42/107 (39%), Positives = 63/107 (58%) Frame = +2 Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319 MSD N + Y+ +ED + A I+AED+W VI+A+F E GLV QQL S+N+FV T+ Sbjct: 1 MSDLANSEKYYDEDPYGFEDES-APITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL 59 Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q ++ E ++L Q+ D + + K I FG++ V+KP E Sbjct: 60 QDIICEDSTLILEQLAQHTTESD--NISRKYEISFGKIYVTKPMVNE 104 [141][TOP] >UniRef100_UPI0001865901 hypothetical protein BRAFLDRAFT_125505 n=1 Tax=Branchiostoma floridae RepID=UPI0001865901 Length = 1176 Score = 70.9 bits (172), Expect = 4e-11 Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 7/101 (6%) Frame = +2 Query: 179 VDEEY----EDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337 +DEEY ED D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V++ Sbjct: 4 IDEEYTYQEEDETDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 63 Query: 338 SPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 SP I L E Q++ + + ++ F Q+ +SKP E Sbjct: 64 SPQIDLQAEAQHLTME--AEVPPRYLLNFEQIYLSKPTHWE 102 [142][TOP] >UniRef100_UPI0000586387 PREDICTED: similar to RNA polymerase II subunit B, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000586387 Length = 300 Score = 70.9 bits (172), Expect = 4e-11 Identities = 38/92 (41%), Positives = 58/92 (63%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 EE D D E W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP + L E Sbjct: 11 EEETDDLTPDQWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAVDLQAE 70 Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q++ + T+ ++KF Q+ +SKP E Sbjct: 71 AQHMTTEQ--EVPTRYLLKFEQIYLSKPTHWE 100 [143][TOP] >UniRef100_C3Y5U9 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae RepID=C3Y5U9_BRAFL Length = 1104 Score = 70.9 bits (172), Expect = 4e-11 Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 7/101 (6%) Frame = +2 Query: 179 VDEEY----EDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337 +DEEY ED D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V++ Sbjct: 4 IDEEYTYQEEDETDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 63 Query: 338 SPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 SP I L E Q++ + + ++ F Q+ +SKP E Sbjct: 64 SPQIDLQAEAQHLTME--AEVPPRYLLNFEQIYLSKPTHWE 102 [144][TOP] >UniRef100_Q6CWA5 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis RepID=Q6CWA5_KLULA Length = 1221 Score = 70.5 bits (171), Expect = 6e-11 Identities = 37/88 (42%), Positives = 57/88 (64%) Frame = +2 Query: 197 DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYV 376 D +A ISAED+W VI+A+F E GLV QQL S+N+F++ T+Q L+ E ++L Q+ Sbjct: 13 DEEEAAISAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHT 72 Query: 377 PGRDAPDENTKVVIKFGQLRVSKPNFTE 460 D + + K I FG++ ++KP+ TE Sbjct: 73 TETD--NISRKYEISFGKIYLAKPSMTE 98 [145][TOP] >UniRef100_Q5A8Y5 DNA-directed RNA polymerase n=2 Tax=Candida albicans RepID=Q5A8Y5_CANAL Length = 1234 Score = 70.5 bits (171), Expect = 6e-11 Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 5/98 (5%) Frame = +2 Query: 182 DEEYEDPNDAD-----ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPD 346 DE DP D I+ ED W VI ++F E GLV QQL S++EFV ++Q LV E Sbjct: 4 DESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSH 63 Query: 347 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 ++L Q+ +D EN + I FG++ +SKP+ TE Sbjct: 64 LILDQPAQHTSEKD--HENKRYEITFGKIYISKPSQTE 99 [146][TOP] >UniRef100_B9W6V2 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36 RepID=B9W6V2_CANDC Length = 1234 Score = 70.5 bits (171), Expect = 6e-11 Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 5/98 (5%) Frame = +2 Query: 182 DEEYEDPNDAD-----ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPD 346 DE DP D I+ ED W VI ++F E GLV QQL S++EFV ++Q LV E Sbjct: 4 DESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSH 63 Query: 347 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 ++L Q+ +D EN + I FG++ +SKP+ TE Sbjct: 64 LILDQPAQHTSEKD--HENKRYEITFGKIYISKPSQTE 99 [147][TOP] >UniRef100_A4QV56 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea RepID=A4QV56_MAGGR Length = 1276 Score = 70.5 bits (171), Expect = 6e-11 Identities = 39/107 (36%), Positives = 58/107 (54%) Frame = +2 Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319 M++ G D + +Y+ ND +I+AED W VI++YFDE GLV QQ+ SYNEF + T+ Sbjct: 1 MAEYGEMDEYADYEAGDYDAENDDEITAEDCWNVISSYFDEKGLVSQQIDSYNEFTTSTI 60 Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q +VDE + L + P + I G + V++P E Sbjct: 61 QGIVDEYSVLTLDNPNPPDTFEGKPIRLRRYEIMLGNILVTQPTVKE 107 [148][TOP] >UniRef100_A3GFG5 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis RepID=A3GFG5_PICST Length = 1232 Score = 70.5 bits (171), Expect = 6e-11 Identities = 37/90 (41%), Positives = 54/90 (60%) Frame = +2 Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370 Y+D + I+ ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q Sbjct: 10 YDDGDAQSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQ 69 Query: 371 YVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + D EN + I FG++ +SKP TE Sbjct: 70 HTSEDD--HENRRYEITFGKIYISKPMQTE 97 [149][TOP] >UniRef100_A5DHT2 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Pichia guilliermondii RepID=RPB2_PICGU Length = 1236 Score = 70.5 bits (171), Expect = 6e-11 Identities = 40/107 (37%), Positives = 60/107 (56%) Frame = +2 Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319 MSD ++ +Y D + + I+ ED W VI+++F E GLV QQL S++EF+ T+ Sbjct: 1 MSDQASDPYMY--------DDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTI 52 Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q LV E ++L Q+ D EN + I FG++ +SKP TE Sbjct: 53 QELVWEDSRLILDQPAQHTSEED--HENRRYEITFGKIYISKPTQTE 97 [150][TOP] >UniRef100_B6K5Q5 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5Q5_SCHJY Length = 1210 Score = 70.1 bits (170), Expect = 7e-11 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Frame = +2 Query: 191 YEDPN-DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPED 367 YED + ++ ED W VI++YF+E+ L RQQL S++EFV TMQ +VD+ + L D Sbjct: 3 YEDYQYNETLTQEDCWTVISSYFEENSLARQQLSSFDEFVQNTMQEIVDDDSTLTL---D 59 Query: 368 QYVPGRDAPDENT-KVVIKFGQLRVSKPNFTE 460 QY A + T + I FGQ+ +S+P TE Sbjct: 60 QYAQHTGAQGDYTRRYEINFGQIYLSRPTMTE 91 [151][TOP] >UniRef100_UPI000180B7B7 PREDICTED: similar to POLR2B protein n=1 Tax=Ciona intestinalis RepID=UPI000180B7B7 Length = 1173 Score = 69.7 bits (169), Expect = 1e-10 Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 12/100 (12%) Frame = +2 Query: 197 DPNDADISAED------------AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340 D +D D+ AE+ W VI++YFDE GLVRQQL S++EF+ +++QR+V+++ Sbjct: 3 DDDDLDLQAEEEEEISPEMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDA 62 Query: 341 PDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 P I L E Q+ + TK ++KF Q+ +SKP E Sbjct: 63 PIIELQAESQHTSTEVSVP--TKYLLKFEQIYLSKPTHWE 100 [152][TOP] >UniRef100_UPI000151B416 hypothetical protein PGUG_02833 n=1 Tax=Pichia guilliermondii ATCC 6260 RepID=UPI000151B416 Length = 1291 Score = 69.7 bits (169), Expect = 1e-10 Identities = 40/107 (37%), Positives = 59/107 (55%) Frame = +2 Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319 MSD ++ +Y D + I+ ED W VI+++F E GLV QQL S++EF+ T+ Sbjct: 56 MSDQASDPYMY--------DDDSLSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTI 107 Query: 320 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q LV E ++L Q+ D EN + I FG++ +SKP TE Sbjct: 108 QELVWEDSRLILDQPAQHTSEED--HENRRYEITFGKIYISKPTQTE 152 [153][TOP] >UniRef100_C5DLS0 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DLS0_LACTC Length = 1220 Score = 69.7 bits (169), Expect = 1e-10 Identities = 37/90 (41%), Positives = 60/90 (66%) Frame = +2 Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370 YED ++A I+AED+W VI+A+F E GLV QQL S+N+F++ T+Q + E ++L Q Sbjct: 14 YED-DEASITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDSIVEDSTLILEQLAQ 72 Query: 371 YVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + +A + + K I FG++ ++KP+ TE Sbjct: 73 HT--TEADNISRKYEISFGKIYLAKPSMTE 100 [154][TOP] >UniRef100_B2W4R0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W4R0_PYRTR Length = 1208 Score = 69.7 bits (169), Expect = 1e-10 Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 +EYED D + ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Sbjct: 13 DEYEDEEDR-VLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQN 71 Query: 365 DQYVPG-RDAPDENTKVVIKFGQLRVSKPNFTE 460 Y P D P + +KFG++ +++P TE Sbjct: 72 QPYNPDEEDNPIIKRRYEMKFGRVYLARPTHTE 104 [155][TOP] >UniRef100_C4QZQ7 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115 RepID=C4QZQ7_PICPG Length = 1227 Score = 69.3 bits (168), Expect = 1e-10 Identities = 35/85 (41%), Positives = 55/85 (64%) Frame = +2 Query: 206 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 385 D I+ ED W VI+A+F+E GLV QQL S++EF+ ++Q LV E P ++L Q+ + Sbjct: 9 DDTITTEDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHTNEK 68 Query: 386 DAPDENTKVVIKFGQLRVSKPNFTE 460 D + N + I+FG++ +S+P TE Sbjct: 69 D--NINKRYEIRFGKIYLSRPTMTE 91 [156][TOP] >UniRef100_C5DW43 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732 RepID=C5DW43_ZYGRC Length = 1224 Score = 68.9 bits (167), Expect = 2e-10 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 7/101 (6%) Frame = +2 Query: 179 VDEEY--EDP-----NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337 VDE+Y EDP + I+AED+W VI+A+F E GLV QQL S+N+FV T+Q ++ E Sbjct: 6 VDEDYYAEDPYGYEDENFPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISE 65 Query: 338 SPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 ++L Q+ D + + K I FG++ V+KP E Sbjct: 66 DSTLILEQLAQHTTESD--NISRKYEISFGKIYVTKPMVNE 104 [157][TOP] >UniRef100_C4Y646 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y646_CLAL4 Length = 369 Score = 68.9 bits (167), Expect = 2e-10 Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 6/96 (6%) Frame = +2 Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL----- 355 Y++ + I+ ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Sbjct: 13 YDEDDSNSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQ 72 Query: 356 -IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 EDQY EN + I FG++ +SKP TE Sbjct: 73 HTSEDQY--------ENKRFEITFGKIYISKPTQTE 100 [158][TOP] >UniRef100_C5LHP3 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LHP3_9ALVE Length = 993 Score = 68.6 bits (166), Expect = 2e-10 Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 6/107 (5%) Frame = +2 Query: 158 EDGVYNGVDEEYEDPNDAD--ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLV 331 E+ V D + +D +D + I +D+W V +AYF + GLV QQ+ S+++FV+ MQ +V Sbjct: 88 EEKVAMEEDADLDDDDDVEDEIVQDDSWAVADAYFKDKGLVSQQVGSFDDFVTYKMQEIV 147 Query: 332 DESPDIVLIPEDQYVPGRDAPDE----NTKVVIKFGQLRVSKPNFTE 460 DE P I +IP++Q G ++ ++ +++FGQL ++KP E Sbjct: 148 DECPPITIIPQNQV--GWESEGARVYMDSSFLVEFGQLSLNKPTVEE 192 [159][TOP] >UniRef100_C5JQR0 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis SLH14081 RepID=C5JQR0_AJEDS Length = 1258 Score = 68.6 bits (166), Expect = 2e-10 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Frame = +2 Query: 182 DEEYEDP----NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 +EEY + D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + Sbjct: 5 EEEYGEDAYYDQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQV 64 Query: 350 VLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460 L + P D D + +KFG + +++P+ TE Sbjct: 65 TL--DQTLAPSEDEIDPVVLRRYELKFGTVMLARPSMTE 101 [160][TOP] >UniRef100_C5GBN2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3 RepID=C5GBN2_AJEDR Length = 1258 Score = 68.6 bits (166), Expect = 2e-10 Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 2/97 (2%) Frame = +2 Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355 G D Y+ D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L Sbjct: 9 GQDAYYDQ--DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL 66 Query: 356 IPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460 + P D D + +KFG + +++P+ TE Sbjct: 67 --DQTLAPSEDEIDPVVLRRYELKFGTVMLARPSMTE 101 [161][TOP] >UniRef100_A6R483 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R483_AJECN Length = 1743 Score = 68.6 bits (166), Expect = 2e-10 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Frame = +2 Query: 182 DEEYEDP----NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 +EEY + D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + Sbjct: 490 EEEYGEDAYYDQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQV 549 Query: 350 VLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460 L + P D D + +KFG + +++P+ TE Sbjct: 550 TL--DQTLAPAEDKIDPVVLRRYELKFGTVMLARPSMTE 586 [162][TOP] >UniRef100_Q6FLD5 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Candida glabrata RepID=RPB2_CANGA Length = 1223 Score = 68.6 bits (166), Expect = 2e-10 Identities = 39/104 (37%), Positives = 61/104 (58%) Frame = +2 Query: 149 SGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRL 328 S + + Y+ +E+ N A I+AED W VI+A+F E GLV QQL S+N+FV T+Q + Sbjct: 2 SADNEDYYDEDPYGFEEEN-APITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDI 60 Query: 329 VDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + E ++L Q+ +D + + K I FG++ V+KP E Sbjct: 61 ISEDSTLILEQLAQHTTEQD--NISRKYEISFGKIYVTKPMVNE 102 [163][TOP] >UniRef100_B6KB61 DNA-directed RNA polymerase n=3 Tax=Toxoplasma gondii RepID=B6KB61_TOXGO Length = 1259 Score = 68.2 bits (165), Expect = 3e-10 Identities = 31/92 (33%), Positives = 53/92 (57%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 E ++ + + W V++++F HGLV QQL+S+N+FVS +Q ++DE P I + P Sbjct: 76 EHGDEGEQGSVDQDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPT 135 Query: 365 DQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 QY P + + N +K QL +++P+ E Sbjct: 136 PQYRPEEEV-ESNVIYRLKMDQLSLNRPSVEE 166 [164][TOP] >UniRef100_C0NB61 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR RepID=C0NB61_AJECG Length = 1307 Score = 68.2 bits (165), Expect = 3e-10 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 6/99 (6%) Frame = +2 Query: 182 DEEYEDP----NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 +EEY + D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + Sbjct: 107 EEEYGEDAYYDQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQV 166 Query: 350 VLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460 L + P D D + +KFG + +++P+ TE Sbjct: 167 TL--DQTLAPAEDEIDPVVLRRYELKFGTVMLARPSVTE 203 [165][TOP] >UniRef100_C1H7W3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1H7W3_PARBA Length = 1258 Score = 67.4 bits (163), Expect = 5e-10 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 10/102 (9%) Frame = +2 Query: 185 EEYEDPNDAD--------ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340 E+YE+ D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E Sbjct: 2 EDYEEEYGEDVYCEQEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQ 61 Query: 341 PDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460 + L + P D D + +KFG + +++P+ TE Sbjct: 62 GQVTL--DQTLAPSEDEVDPVVLRRYELKFGTVMLARPSMTE 101 [166][TOP] >UniRef100_C0S0L5 DNA-directed RNA polymerase n=2 Tax=Paracoccidioides brasiliensis RepID=C0S0L5_PARBP Length = 1258 Score = 67.4 bits (163), Expect = 5e-10 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 10/102 (9%) Frame = +2 Query: 185 EEYEDPNDAD--------ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340 E+YE+ D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E Sbjct: 2 EDYEEEYGEDVYCEQEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQ 61 Query: 341 PDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTE 460 + L + P D D + +KFG + +++P+ TE Sbjct: 62 GQVTL--DQTLAPSEDEVDPVVLRRYELKFGTVMLARPSMTE 101 [167][TOP] >UniRef100_B5RV50 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii RepID=B5RV50_DEBHA Length = 1232 Score = 67.4 bits (163), Expect = 5e-10 Identities = 36/90 (40%), Positives = 56/90 (62%) Frame = +2 Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370 Y+D +++ I+ E+ W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q Sbjct: 13 YDDDSES-ITPENCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQ 71 Query: 371 YVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + D EN + I FG++ +SKP TE Sbjct: 72 HTSEDD--HENRRYEITFGKIYISKPTQTE 99 [168][TOP] >UniRef100_C4Q1D7 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni RepID=C4Q1D7_SCHMA Length = 1304 Score = 66.2 bits (160), Expect = 1e-09 Identities = 39/110 (35%), Positives = 59/110 (53%) Frame = +2 Query: 131 LYDMSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVS 310 L D + E Y +D D+ E W VI++YFDE GLVRQQL S++EF+ Sbjct: 119 LEDFEEDDPERQFYGDEQSNEDDEITPDMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQ 178 Query: 311 VTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 ++Q++V++SP I L E Q+ G + + +KF Q+ +SK E Sbjct: 179 TSIQKIVEDSPIIELQAEAQHSGG--ILETPVQYRLKFEQIYLSKATHWE 226 [169][TOP] >UniRef100_A7TTM7 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TTM7_VANPO Length = 1223 Score = 66.2 bits (160), Expect = 1e-09 Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 1/98 (1%) Frame = +2 Query: 170 YNGVDEEYE-DPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPD 346 Y G ++ Y + A I+AED+W VI+++F E GLV QQL S+N+FV T+Q ++ E Sbjct: 6 YYGDEDPYGFEEETAPITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDST 65 Query: 347 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 ++L Q+ D + + K I FG++ V+KP E Sbjct: 66 LILEQLAQHTTESD--NISRKYEISFGKIYVTKPMVNE 101 [170][TOP] >UniRef100_A9UUX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9UUX4_MONBE Length = 1166 Score = 65.9 bits (159), Expect = 1e-09 Identities = 37/89 (41%), Positives = 51/89 (57%) Frame = +2 Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373 +D D D E WEVINAYF E GLVRQQL S++ F++ T+Q+++ SP I + QY Sbjct: 1 DDDADIDNWDEACWEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKNSPPIEVQGRLQY 60 Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 + + +E K I FGQ + P E Sbjct: 61 L--SNEIEEPPKHTISFGQAGFALPQHKE 87 [171][TOP] >UniRef100_Q02061 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Schizosaccharomyces pombe RepID=RPB2_SCHPO Length = 1210 Score = 65.9 bits (159), Expect = 1e-09 Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 2/92 (2%) Frame = +2 Query: 191 YEDPN-DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPED 367 YED + ++ ED W VI+++F+E L RQQL S++EFV TMQ +VD+ + L D Sbjct: 3 YEDYQYNETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTL---D 59 Query: 368 QYVPGRDAP-DENTKVVIKFGQLRVSKPNFTE 460 QY A D + I FGQ+ +S+P TE Sbjct: 60 QYAQHTGAQGDVTRRYEINFGQIYLSRPTMTE 91 [172][TOP] >UniRef100_C5MEG3 DNA-directed RNA polymerase n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MEG3_CANTT Length = 1240 Score = 65.5 bits (158), Expect = 2e-09 Identities = 38/95 (40%), Positives = 56/95 (58%) Frame = +2 Query: 176 GVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355 G DEE E I+ ED W VI+++F E GLV QQL S++EFV ++Q LV E ++L Sbjct: 12 GYDEEIET-----ITQEDCWTVISSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLIL 66 Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q+ D +N + I+FG++ +SK + TE Sbjct: 67 DQPAQHTSVAD--HKNKRYEIEFGKIYISKTSQTE 99 [173][TOP] >UniRef100_C9JZW8 Putative uncharacterized protein POLR2B n=1 Tax=Homo sapiens RepID=C9JZW8_HUMAN Length = 76 Score = 64.3 bits (155), Expect = 4e-09 Identities = 30/66 (45%), Positives = 46/66 (69%) Frame = +2 Query: 185 EEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPE 364 +E +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Sbjct: 4 DEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAE 63 Query: 365 DQYVPG 382 Q+ G Sbjct: 64 AQHASG 69 [174][TOP] >UniRef100_Q98RY5 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98RY5_GUITH Length = 1206 Score = 63.9 bits (154), Expect = 5e-09 Identities = 29/86 (33%), Positives = 51/86 (59%) Frame = +2 Query: 203 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 382 N+++ + W ++ +F + GLV QQ+ S+N F+ TMQ ++D+ P I + ++ PG Sbjct: 2 NNSNFDIDILWHILKLFFIQKGLVDQQINSFNNFIQNTMQDIIDDMPPITVYIDND--PG 59 Query: 383 RDAPDENTKVVIKFGQLRVSKPNFTE 460 D ++VI+ GQL +SKP + E Sbjct: 60 NDDLLSKIRMVIRLGQLHLSKPTYIE 85 [175][TOP] >UniRef100_UPI00017B4CC9 UPI00017B4CC9 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B4CC9 Length = 1147 Score = 63.2 bits (152), Expect = 9e-09 Identities = 31/72 (43%), Positives = 50/72 (69%) Frame = +2 Query: 245 NAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKF 424 ++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G +E + ++KF Sbjct: 4 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE--VEEPPRYLLKF 61 Query: 425 GQLRVSKPNFTE 460 Q+ +SKP E Sbjct: 62 EQIYLSKPTHWE 73 [176][TOP] >UniRef100_Q4T1Y4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4T1Y4_TETNG Length = 1217 Score = 63.2 bits (152), Expect = 9e-09 Identities = 31/72 (43%), Positives = 50/72 (69%) Frame = +2 Query: 245 NAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKF 424 ++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G +E + ++KF Sbjct: 4 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE--VEEPPRYLLKF 61 Query: 425 GQLRVSKPNFTE 460 Q+ +SKP E Sbjct: 62 EQIYLSKPTHWE 73 [177][TOP] >UniRef100_Q8SR75 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Encephalitozoon cuniculi RepID=RPB2_ENCCU Length = 1141 Score = 62.8 bits (151), Expect = 1e-08 Identities = 29/81 (35%), Positives = 53/81 (65%) Frame = +2 Query: 206 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 385 ++ + E +W +I+++F++ GLVRQQL S+++FV MQ +++ESP I++ Q P Sbjct: 2 ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIV----QSAPTA 57 Query: 386 DAPDENTKVVIKFGQLRVSKP 448 + ++ ++FGQ+ VSKP Sbjct: 58 GI-ETQKRIAVRFGQIYVSKP 77 [178][TOP] >UniRef100_Q1L5A7 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Spinacia oleracea RepID=Q1L5A7_SPIOL Length = 495 Score = 62.4 bits (150), Expect = 2e-08 Identities = 31/61 (50%), Positives = 40/61 (65%) Frame = +2 Query: 278 QQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFT 457 QQL S++EF+ TMQ +VDES DI + PE Q+ PG + T IKFGQ+ +SKP T Sbjct: 1 QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKIKFGQIYLSKPMMT 60 Query: 458 E 460 E Sbjct: 61 E 61 [179][TOP] >UniRef100_Q2GU47 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum RepID=Q2GU47_CHAGB Length = 1182 Score = 61.6 bits (148), Expect = 3e-08 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Frame = +2 Query: 182 DEEYEDPNDAD--ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355 + E ED D D I+ ED W+VI ++FD GLV QQ+ S++EF S T+Q LVDE Sbjct: 31 EAELEDAEDTDDTITTEDTWDVIQSHFDCKGLVAQQIDSFDEFTSTTIQSLVDEVTKRAR 90 Query: 356 IPEDQYVPGRDAPDENTKVVIKFGQ 430 + ++ V +D +E + + + G+ Sbjct: 91 VAINEEVALKDMDEEQQEYMARTGE 115 [180][TOP] >UniRef100_Q4Q6P8 DNA-directed RNA polymerase n=1 Tax=Leishmania major RepID=Q4Q6P8_LEIMA Length = 1185 Score = 61.2 bits (147), Expect = 3e-08 Identities = 33/75 (44%), Positives = 53/75 (70%) Frame = +2 Query: 158 EDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337 +DG+ + D+E +PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ E Sbjct: 17 DDGIVDEHDDE--NPND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-E 71 Query: 338 SPDIVLIPEDQYVPG 382 S ++ +DQY PG Sbjct: 72 SMAVIPRQDDQYDPG 86 [181][TOP] >UniRef100_C4V8X8 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01 RepID=C4V8X8_NOSCE Length = 1143 Score = 60.8 bits (146), Expect = 4e-08 Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Frame = +2 Query: 224 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 403 E +W++I+ +F++ GLV QQ+ S+++FV MQ ++DESP I + + G + Sbjct: 8 EYSWDIISKFFEQKGLVGQQIDSFDQFVKTKMQEVIDESPLITV--QSTLSAGNET---R 62 Query: 404 TKVVIKFGQLRVSK-PNFTE 460 K+ +KFGQ+ VSK P++TE Sbjct: 63 KKITLKFGQIYVSKPPSYTE 82 [182][TOP] >UniRef100_A4I6A8 DNA-directed RNA polymerase n=1 Tax=Leishmania infantum RepID=A4I6A8_LEIIN Length = 1181 Score = 60.5 bits (145), Expect = 6e-08 Identities = 32/70 (45%), Positives = 51/70 (72%) Frame = +2 Query: 173 NGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIV 352 +G+D+E +PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES ++ Sbjct: 18 DGIDDE--NPND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVI 72 Query: 353 LIPEDQYVPG 382 +DQY PG Sbjct: 73 PRQDDQYDPG 82 [183][TOP] >UniRef100_A1RWW6 DNA-directed RNA polymerase n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RWW6_THEPD Length = 1130 Score = 60.1 bits (144), Expect = 8e-08 Identities = 34/84 (40%), Positives = 45/84 (53%) Frame = +2 Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388 A +S ED W V+ AY DE GLVRQ L S+N F+ +Q +VDE I + Sbjct: 8 AKLSREDRWRVVKAYVDELGLVRQHLDSFNAFLERGLQEIVDEVGGIKV----------- 56 Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460 E+ V IKFG++ V +P F E Sbjct: 57 ---ESQGVEIKFGKIEVGQPTFRE 77 [184][TOP] >UniRef100_A4HIZ1 DNA-directed RNA polymerase n=1 Tax=Leishmania braziliensis RepID=A4HIZ1_LEIBR Length = 1185 Score = 59.7 bits (143), Expect = 1e-07 Identities = 33/75 (44%), Positives = 52/75 (69%) Frame = +2 Query: 158 EDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337 +DG + D+E +PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ E Sbjct: 17 DDGFIDERDDE--NPND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-E 71 Query: 338 SPDIVLIPEDQYVPG 382 S ++ +DQY PG Sbjct: 72 SMAVIPRQDDQYDPG 86 [185][TOP] >UniRef100_Q583H5 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei RepID=Q583H5_9TRYP Length = 1190 Score = 59.3 bits (142), Expect = 1e-07 Identities = 31/86 (36%), Positives = 50/86 (58%) Frame = +2 Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373 E+ N ADI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+ +IV +DQ+ Sbjct: 31 ENVNTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFL-LRIPRMARSLLEIVPRQDDQF 89 Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPN 451 PG E + + + V P+ Sbjct: 90 DPGVHVESEPDQYRLSLEDVVVGNPS 115 [186][TOP] >UniRef100_C9ZN35 DNA-directed RNA polymerase II subunit 2, putative n=1 Tax=Trypanosoma brucei gambiense DAL972 RepID=C9ZN35_TRYBG Length = 1189 Score = 59.3 bits (142), Expect = 1e-07 Identities = 31/86 (36%), Positives = 50/86 (58%) Frame = +2 Query: 194 EDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 373 E+ N ADI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+ +IV +DQ+ Sbjct: 30 ENVNTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFL-LRIPRMARSLLEIVPRQDDQF 88 Query: 374 VPGRDAPDENTKVVIKFGQLRVSKPN 451 PG E + + + V P+ Sbjct: 89 DPGVHVESEPDQYRLSLEDVVVGNPS 114 [187][TOP] >UniRef100_C9JMN3 Putative uncharacterized protein POLR2B n=1 Tax=Homo sapiens RepID=C9JMN3_HUMAN Length = 64 Score = 59.3 bits (142), Expect = 1e-07 Identities = 26/57 (45%), Positives = 43/57 (75%), Gaps = 3/57 (5%) Frame = +2 Query: 182 DEEYEDPNDA---DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESP 343 D +Y++ +D D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P Sbjct: 7 DMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAP 63 [188][TOP] >UniRef100_C4PBI7 DNA-directed RNA polymerase n=1 Tax=Epichloe festucae RepID=C4PBI7_9HYPO Length = 1261 Score = 58.5 bits (140), Expect = 2e-07 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Frame = +2 Query: 182 DEEYED--PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL 355 D +YE+ +D I+ ED W VI+++F+ GLV QQ S++EF T+Q LV+E I L Sbjct: 7 DYDYENYGEDDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITL 66 Query: 356 -IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 P PG + IKFG + VS+P +E Sbjct: 67 DQPNPPSPPG--IKIALRRYEIKFGTVMVSRPTISE 100 [189][TOP] >UniRef100_C6A1F9 DNA-directed RNA polymerase n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A1F9_THESM Length = 1118 Score = 58.5 bits (140), Expect = 2e-07 Identities = 30/87 (34%), Positives = 46/87 (52%) Frame = +2 Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379 P +++ +D W ++ AY+DE GLVRQ L SYN F+ MQ ++ E + Sbjct: 4 PTIVEVTPDDLWHIMKAYWDEKGLVRQHLDSYNAFIEHGMQEVISEFEGV---------- 53 Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460 D PD +KFG++R+ +P F E Sbjct: 54 KPDIPD----FEVKFGRVRLGEPEFQE 76 [190][TOP] >UniRef100_C3N7P9 DNA-directed RNA polymerase n=2 Tax=Sulfolobus islandicus RepID=C3N7P9_SULIY Length = 1131 Score = 58.5 bits (140), Expect = 2e-07 Identities = 29/84 (34%), Positives = 46/84 (54%) Frame = +2 Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388 +++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 6 SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52 Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460 P E + ++ G++R+ KP E Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRE 75 [191][TOP] >UniRef100_C3MY98 DNA-directed RNA polymerase n=3 Tax=Sulfolobus islandicus RepID=C3MY98_SULIM Length = 1131 Score = 58.5 bits (140), Expect = 2e-07 Identities = 29/84 (34%), Positives = 46/84 (54%) Frame = +2 Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388 +++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 6 SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52 Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460 P E + ++ G++R+ KP E Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRE 75 [192][TOP] >UniRef100_C3MRK2 DNA-directed RNA polymerase n=1 Tax=Sulfolobus islandicus L.S.2.15 RepID=C3MRK2_SULIL Length = 1131 Score = 58.5 bits (140), Expect = 2e-07 Identities = 29/84 (34%), Positives = 46/84 (54%) Frame = +2 Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388 +++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 6 SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52 Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460 P E + ++ G++R+ KP E Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRE 75 [193][TOP] >UniRef100_B6YT15 DNA-directed RNA polymerase n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YT15_THEON Length = 1120 Score = 58.5 bits (140), Expect = 2e-07 Identities = 32/87 (36%), Positives = 47/87 (54%) Frame = +2 Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379 P D++ +D W V+ AY+ E GLVRQ L SYN F+ MQ++++E I Sbjct: 4 PTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDYGMQQVINEFGGI---------- 53 Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460 D PD +KFG++R+ +P F E Sbjct: 54 KPDIPD----FEVKFGKIRLGEPEFQE 76 [194][TOP] >UniRef100_B8YB55 DNA-directed RNA polymerase n=1 Tax=Sulfolobus shibatae B12 RepID=B8YB55_SULSH Length = 1131 Score = 58.5 bits (140), Expect = 2e-07 Identities = 29/84 (34%), Positives = 46/84 (54%) Frame = +2 Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388 +++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 6 SNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52 Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460 P E + ++ G++R+ KP E Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRE 75 [195][TOP] >UniRef100_P31814 DNA-directed RNA polymerase subunit B n=1 Tax=Thermococcus celer RepID=RPOB_THECE Length = 1122 Score = 58.5 bits (140), Expect = 2e-07 Identities = 32/87 (36%), Positives = 46/87 (52%) Frame = +2 Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379 P D++ +D W V+ AY+ E GLVRQ L SYN F+ MQ ++DE + Sbjct: 6 PTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGV---------- 55 Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460 D PD +KFG++R+ +P F E Sbjct: 56 KPDIPD----FEVKFGKVRLGEPEFQE 78 [196][TOP] >UniRef100_Q4CRQ2 DNA-directed RNA polymerase II subunit 2, putative (Fragment) n=1 Tax=Trypanosoma cruzi RepID=Q4CRQ2_TRYCR Length = 617 Score = 58.2 bits (139), Expect = 3e-07 Identities = 32/98 (32%), Positives = 53/98 (54%) Frame = +2 Query: 158 EDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE 337 EDG VD E+ DI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+ Sbjct: 17 EDGADYTVDGEHA--GSTDIDSEDIWEIISSFFREKGLVHQQIDSYNDFL-LRIPRMARS 73 Query: 338 SPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPN 451 +IV ++Q+ PG E + + + + P+ Sbjct: 74 LLEIVPRQDEQFEPGTQTETEPDQYRLSLEDVVIGNPS 111 [197][TOP] >UniRef100_O59226 DNA-directed RNA polymerase n=1 Tax=Pyrococcus horikoshii RepID=O59226_PYRHO Length = 1117 Score = 58.2 bits (139), Expect = 3e-07 Identities = 32/87 (36%), Positives = 47/87 (54%) Frame = +2 Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379 P +++ +D W V+ +Y++E GLVRQ L SYN F+ +Q +VDE I Sbjct: 4 PTVVEVTPDDLWIVMESYWEEKGLVRQHLDSYNAFIERGLQEVVDEFGGI---------- 53 Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460 D PD +KFG++RV +P F E Sbjct: 54 KPDIPD----FEVKFGKIRVGEPEFQE 76 [198][TOP] >UniRef100_C7ZA30 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7ZA30_NECH7 Length = 1261 Score = 57.8 bits (138), Expect = 4e-07 Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 1/108 (0%) Frame = +2 Query: 140 MSDSGNEDGVYNGVDEEYEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTM 319 M+D E Y+ D++ E I+ ED W VI+++F+ GLV QQ S++EF T+ Sbjct: 1 MADYEEELSDYDNYDDQEEG-----ITPEDCWTVISSFFESKGLVSQQTDSFDEFTQTTI 55 Query: 320 QRLVDESPDIVL-IPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 Q LV+E I L P PG + IKFG + VS+P +E Sbjct: 56 QDLVNEYSVISLDQPNPPSPPG--VSIALRRYEIKFGSVMVSRPTISE 101 [199][TOP] >UniRef100_Q9V115 DNA-directed RNA polymerase n=1 Tax=Pyrococcus abyssi RepID=Q9V115_PYRAB Length = 1117 Score = 57.4 bits (137), Expect = 5e-07 Identities = 32/87 (36%), Positives = 46/87 (52%) Frame = +2 Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379 P +++ +D W V+ +Y+ E GLVRQ L SYN F+ +Q +VDE I Sbjct: 4 PTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGI---------- 53 Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460 D PD +KFG++RV +P F E Sbjct: 54 KPDIPD----FEVKFGKIRVGEPEFQE 76 [200][TOP] >UniRef100_A4YCQ8 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YCQ8_METS5 Length = 1124 Score = 57.4 bits (137), Expect = 5e-07 Identities = 28/82 (34%), Positives = 45/82 (54%) Frame = +2 Query: 215 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 394 +S +D W ++ AYF GLVRQ L S+N+F+ +Q ++DE +I+ +PG Sbjct: 2 LSVDDRWVIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEII-----TEIPG---- 52 Query: 395 DENTKVVIKFGQLRVSKPNFTE 460 + I+ G++RV KP E Sbjct: 53 -----LKIRLGKIRVGKPRVRE 69 [201][TOP] >UniRef100_Q01GR5 RPB2_LYCES DNA-directed RNA polymerase II 135 kDa polypeptide (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01GR5_OSTTA Length = 86 Score = 57.0 bits (136), Expect = 6e-07 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 6/65 (9%) Frame = +2 Query: 155 NEDGVYNGVDEEYEDPND------ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVT 316 +ED V VD ED + A+ EDAW VI+++F+E GLVRQQL S+NEF+ T Sbjct: 5 DEDDVDMRVDGHEEDEEEEIGQGRAERLQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHT 64 Query: 317 MQRLV 331 MQ +V Sbjct: 65 MQEIV 69 [202][TOP] >UniRef100_Q980R0 DNA-directed RNA polymerase, subunit B'' (RpoB2) n=1 Tax=Sulfolobus solfataricus RepID=Q980R0_SULSO Length = 480 Score = 57.0 bits (136), Expect = 6e-07 Identities = 28/84 (33%), Positives = 45/84 (53%) Frame = +2 Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388 ++++ ++ W VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 3 SNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 49 Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460 P E + ++ G++R+ KP E Sbjct: 50 -PTEIPGLKVRLGKIRIGKPRVRE 72 [203][TOP] >UniRef100_Q8U0M3 DNA-directed RNA polymerase n=1 Tax=Pyrococcus furiosus RepID=Q8U0M3_PYRFU Length = 1117 Score = 57.0 bits (136), Expect = 6e-07 Identities = 32/87 (36%), Positives = 46/87 (52%) Frame = +2 Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 379 P D++ +D W V+ +Y+ E GLVRQ L SYN F+ +Q +V+E I Sbjct: 4 PTVVDVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGI---------- 53 Query: 380 GRDAPDENTKVVIKFGQLRVSKPNFTE 460 D PD +KFG++RV +P F E Sbjct: 54 KPDIPD----FEVKFGKIRVGEPEFQE 76 [204][TOP] >UniRef100_C5SSJ4 DNA-directed RNA polymerase n=1 Tax=Sulfolobus solfataricus 98/2 RepID=C5SSJ4_SULSO Length = 1124 Score = 57.0 bits (136), Expect = 6e-07 Identities = 28/84 (33%), Positives = 45/84 (53%) Frame = +2 Query: 209 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 388 ++++ ++ W VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 3 SNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 49 Query: 389 APDENTKVVIKFGQLRVSKPNFTE 460 P E + ++ G++R+ KP E Sbjct: 50 -PTEIPGLKVRLGKIRIGKPRVRE 72 [205][TOP] >UniRef100_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis G3 RepID=A2E7H8_TRIVA Length = 1177 Score = 55.5 bits (132), Expect = 2e-06 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 9/99 (9%) Frame = +2 Query: 191 YEDPNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 370 Y D N+ + S D W VI+ +F+ GLV+QQL+SYN F++ + ++D+ I L DQ Sbjct: 8 YVDANEDNWSQNDMWMVISKFFENRGLVKQQLKSYNSFINNCVDSVLDDKGHITL-QSDQ 66 Query: 371 YVPGR---------DAPDENTKVVIKFGQLRVSKPNFTE 460 + + D D+ + I FG V +P E Sbjct: 67 LLANKIKMDFNSNDDDEDQGKTIHISFGTSTVLRPTTPE 105 [206][TOP] >UniRef100_A8AA81 DNA-directed RNA polymerase n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8AA81_IGNH4 Length = 1132 Score = 55.5 bits (132), Expect = 2e-06 Identities = 23/42 (54%), Positives = 33/42 (78%) Frame = +2 Query: 224 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDI 349 ED W ++ AYF E GLV QQL+SYN+FV+ TMQ+L++E ++ Sbjct: 11 EDRWAIMRAYFKEKGLVSQQLESYNKFVTETMQKLIEELGEV 52 [207][TOP] >UniRef100_B5IVZ8 DNA-directed RNA polymerase n=1 Tax=Thermococcus barophilus MP RepID=B5IVZ8_9EURY Length = 1118 Score = 54.7 bits (130), Expect = 3e-06 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Frame = +2 Query: 200 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE----SPDIVLIPED 367 P +++ +D W V+ +Y++E GLVRQ L SYN F+ MQ +++E PDI Sbjct: 4 PTVVEVTPDDLWSVMESYWNEKGLVRQHLDSYNAFIDHGMQEVINEFGGIKPDI------ 57 Query: 368 QYVPGRDAPDENTKVVIKFGQLRVSKPNFTE 460 +KFG++R+ +P F E Sbjct: 58 ------------PNFEVKFGKIRLGEPEFQE 76 [208][TOP] >UniRef100_C5Y8Y9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5Y8Y9_SORBI Length = 1239 Score = 54.3 bits (129), Expect = 4e-06 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%) Frame = +2 Query: 155 NEDGVYNGVDEEYED-PNDADISAEDAW--EVINAYFDEHGLVRQQLQSYNEFVSVTMQR 325 N+D E Y + P D + + + + E ++FDE GL+ Q+ SYNEFVS +Q Sbjct: 73 NDDVNGKSSSEPYSNAPIDMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQE 132 Query: 326 LVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNF 454 L D ++++ E Y P + +IKFG++++ KP F Sbjct: 133 LFDSLGEVIV--EPGYDPSKKGSGGWKHAIIKFGRVKLEKPVF 173 [209][TOP] >UniRef100_B4FHF6 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FHF6_MAIZE Length = 267 Score = 54.3 bits (129), Expect = 4e-06 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = +2 Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415 E ++FDE GL+ Q+ SYNEFVS +Q L D ++++ E Y P + + Sbjct: 93 EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGSWKHAI 150 Query: 416 IKFGQLRVSKPNF 454 IKFG++++ KP F Sbjct: 151 IKFGRVKLEKPVF 163 [210][TOP] >UniRef100_Q07DU9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays RepID=Q07DU9_MAIZE Length = 1170 Score = 53.5 bits (127), Expect = 7e-06 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = +2 Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415 E ++FDE GL+ Q+ SYNEFVS +Q L D ++++ E Y P + + Sbjct: 34 EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGGWKHAI 91 Query: 416 IKFGQLRVSKPNF 454 IKFG++++ KP F Sbjct: 92 IKFGRVKLEKPVF 104 [211][TOP] >UniRef100_C5WRS0 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5WRS0_SORBI Length = 1228 Score = 53.5 bits (127), Expect = 7e-06 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Frame = +2 Query: 173 NGVDEEYEDPNDADISAED----AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDES 340 NG E D+S E E ++FDE GL+ Q+ SYN+FVS +Q L D Sbjct: 67 NGKSSEPYSNAPIDLSVESLEKFCKEASRSFFDEVGLISHQINSYNDFVSHGLQELFDSL 126 Query: 341 PDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNF 454 ++++ E Y P + +IKFG++++ KP F Sbjct: 127 GEVIV--EPGYDPSKKGSGGWKHAIIKFGRVKLEKPVF 162 [212][TOP] >UniRef100_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSV4_ENTBH Length = 1138 Score = 53.5 bits (127), Expect = 7e-06 Identities = 27/75 (36%), Positives = 46/75 (61%) Frame = +2 Query: 224 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 403 E+ W +I ++FD+ GLVRQQL S+N+FV + MQ ++DE+ I + + +P E Sbjct: 19 ENNWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIIDENSIISV----KSIPTAGNSIER 74 Query: 404 TKVVIKFGQLRVSKP 448 ++ + FGQ+ + P Sbjct: 75 -EIKLYFGQISILGP 88 [213][TOP] >UniRef100_Q7XTQ7 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q7XTQ7_ORYSJ Length = 1343 Score = 53.1 bits (126), Expect = 9e-06 Identities = 27/73 (36%), Positives = 41/73 (56%) Frame = +2 Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415 E ++FDE GL+ Q+ SYNEFVS +Q L D ++ + E Y P P + Sbjct: 153 EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 210 Query: 416 IKFGQLRVSKPNF 454 IKFG++++ +P F Sbjct: 211 IKFGRVQLEEPVF 223 [214][TOP] >UniRef100_Q7F9D6 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q7F9D6_ORYSJ Length = 1316 Score = 53.1 bits (126), Expect = 9e-06 Identities = 27/73 (36%), Positives = 41/73 (56%) Frame = +2 Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415 E ++FDE GL+ Q+ SYNEFVS +Q L D ++ + E Y P P + Sbjct: 153 EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 210 Query: 416 IKFGQLRVSKPNF 454 IKFG++++ +P F Sbjct: 211 IKFGRVQLEEPVF 223 [215][TOP] >UniRef100_Q259Y6 DNA-directed RNA polymerase n=1 Tax=Oryza sativa RepID=Q259Y6_ORYSA Length = 1343 Score = 53.1 bits (126), Expect = 9e-06 Identities = 27/73 (36%), Positives = 41/73 (56%) Frame = +2 Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415 E ++FDE GL+ Q+ SYNEFVS +Q L D ++ + E Y P P + Sbjct: 153 EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 210 Query: 416 IKFGQLRVSKPNF 454 IKFG++++ +P F Sbjct: 211 IKFGRVQLEEPVF 223 [216][TOP] >UniRef100_Q0J9N2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oryza sativa Japonica Group RepID=Q0J9N2_ORYSJ Length = 1270 Score = 53.1 bits (126), Expect = 9e-06 Identities = 27/73 (36%), Positives = 41/73 (56%) Frame = +2 Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415 E ++FDE GL+ Q+ SYNEFVS +Q L D ++ + E Y P P + Sbjct: 107 EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 164 Query: 416 IKFGQLRVSKPNF 454 IKFG++++ +P F Sbjct: 165 IKFGRVQLEEPVF 177 [217][TOP] >UniRef100_B9FCT0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=B9FCT0_ORYSJ Length = 1185 Score = 53.1 bits (126), Expect = 9e-06 Identities = 27/73 (36%), Positives = 41/73 (56%) Frame = +2 Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415 E ++FDE GL+ Q+ SYNEFVS +Q L D ++ + E Y P P + Sbjct: 89 EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 146 Query: 416 IKFGQLRVSKPNF 454 IKFG++++ +P F Sbjct: 147 IKFGRVQLEEPVF 159 [218][TOP] >UniRef100_B8AV78 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group RepID=B8AV78_ORYSI Length = 1177 Score = 53.1 bits (126), Expect = 9e-06 Identities = 27/73 (36%), Positives = 41/73 (56%) Frame = +2 Query: 236 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 415 E ++FDE GL+ Q+ SYNEFVS +Q L D ++ + E Y P P + Sbjct: 89 EASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTV--EPSYDPSNRGPGGWRHAI 146 Query: 416 IKFGQLRVSKPNF 454 IKFG++++ +P F Sbjct: 147 IKFGRVQLEEPVF 159