AU194554 ( PFL062a08_r )

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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
            RepID=O04142_PORYE
          Length = 1685

 Score =  358 bits (918), Expect = 2e-97
 Identities = 183/184 (99%), Positives = 183/184 (99%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM
Sbjct: 1171 NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 1230

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
            EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVF RQDNKIVIDSVTGSFTKENEWLLET
Sbjct: 1231 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFTRQDNKIVIDSVTGSFTKENEWLLET 1290

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL
Sbjct: 1291 DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 1350

Query: 543  SVLV 554
            SVLV
Sbjct: 1351 SVLV 1354

[2][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score =  194 bits (494), Expect = 3e-48
 Identities = 102/183 (55%), Positives = 129/183 (70%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            N+IH   GGD++VMASEDN A LV+R+R+A + E +           E E+ A       
Sbjct: 1230 NKIHHDLGGDVNVMASEDNDANLVLRIRIAAQKEPEK--------MAEGEEHA------- 1274

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
            ++EE+ E LFLRKVE  LLS + L G+P I KV+MR+ ++IV D  TG  + E EW+L+T
Sbjct: 1275 QEEEEDECLFLRKVEGSLLSEMNLGGVPDIKKVYMREADRIVPDPRTGGLSVEKEWVLDT 1334

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DG N +AVM H+DVD+TRTVSND+VE F  LGIE VRA LLNEIR VISFDGAYVNYRHL
Sbjct: 1335 DGTNLLAVMSHKDVDYTRTVSNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYVNYRHL 1394

Query: 543  SVL 551
            ++L
Sbjct: 1395 AIL 1397

[3][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
            RepID=O09451_9FLOR
          Length = 1732

 Score =  192 bits (489), Expect = 1e-47
 Identities = 104/185 (56%), Positives = 131/185 (70%), Gaps = 1/185 (0%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMEN-EDKAGISDSTKPRFEDEQDADRVAAE 179
            N I  +FG D+HV+ S+DN  ++V+R+RVA E+ ++K G          +E  AD    E
Sbjct: 1157 NMITQNFGNDVHVIRSQDNDEKMVMRLRVADESAQEKCG----------EEGGAD---IE 1203

Query: 180  MEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLE 359
             +D+ED++D FLR++ES+LLS + L GIP I KVFMRQ     +D  TG+     EW+L+
Sbjct: 1204 EDDDEDSDDTFLRRLESELLSQMNLGGIPAIRKVFMRQSRFTFVDPGTGTHKSREEWVLD 1263

Query: 360  TDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRH 539
            TDGVN +AVM HE VD TRT SNDIVE FEVLGIEAVR  LLNEIR VISFDGAYVNYRH
Sbjct: 1264 TDGVNLLAVMSHEAVDHTRTTSNDIVEIFEVLGIEAVREVLLNEIRGVISFDGAYVNYRH 1323

Query: 540  LSVLV 554
            L++LV
Sbjct: 1324 LAILV 1328

[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
            uvarioides RepID=Q9AXN1_9FLOR
          Length = 1712

 Score =  179 bits (453), Expect = 2e-43
 Identities = 98/184 (53%), Positives = 125/184 (67%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            N +  +FG D+H++ S DN   LVIR+RV   +++ A I  +   R E+  D   +  + 
Sbjct: 1154 NMMQQNFGDDIHIVRSTDNDERLVIRLRV---HDEGANIKYAEDGRREEGIDTG-MDIDD 1209

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
            ED++D +D FLR +ES+LL+ + L GI  I KVFMRQ  +  ID   G +  + EW+L+T
Sbjct: 1210 EDDDDTDDAFLRTLESELLNKMPLGGIKDIHKVFMRQAKRQYIDKEYGKYKTDEEWVLDT 1269

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN  AVM HE VD TRT+SNDIVE FE LGIEAVR  LL EIR VISFDGAYVNYRHL
Sbjct: 1270 DGVNLKAVMCHEAVDHTRTMSNDIVEIFETLGIEAVREALLQEIRGVISFDGAYVNYRHL 1329

Query: 543  SVLV 554
            S+LV
Sbjct: 1330 SILV 1333

[5][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
            castellanii RepID=O00820_ACACA
          Length = 1569

 Score =  174 bits (440), Expect = 5e-42
 Identities = 91/183 (49%), Positives = 125/183 (68%), Gaps = 1/183 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RIHA FGGDL+ + ++DNA +L++R+R+  + E+KA                     + E
Sbjct: 1143 RIHADFGGDLNCIYNDDNADKLILRIRINNDEENKA--------------------PDQE 1182

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQD-NKIVIDSVTGSFTKENEWLLET 362
                 +D+FL+++ES +L+ + L GI GI KVF+R+D NK+ ID+  G +TK NE +L+T
Sbjct: 1183 GSVGDDDVFLKQIESNMLTEMDLKGIEGIKKVFIREDKNKVAIDA-RGEYTKANELVLDT 1241

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            +G N +AVM H DVD TRT SN+I+ET EVLGIEAVR  LL E+R VISFDGAYVNYRHL
Sbjct: 1242 EGTNLLAVMSHPDVDHTRTTSNNIIETIEVLGIEAVRNALLRELRNVISFDGAYVNYRHL 1301

Query: 543  SVL 551
            ++L
Sbjct: 1302 AIL 1304

[6][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
            RepID=C1EA31_9CHLO
          Length = 1720

 Score =  168 bits (425), Expect = 3e-40
 Identities = 87/183 (47%), Positives = 124/183 (67%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI+  F  DL  + ++DN+ +L++R+R+                   D +  D+ A    
Sbjct: 1215 RINQDFQEDLSCIFNDDNSEKLILRIRLL------------------DNEMGDKEAGPST 1256

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
             E++   +FL+K+ESQ+L+NL L GIP I KVF+R+ N + +D VT +FTK++EW+L+T+
Sbjct: 1257 TEDE---VFLKKLESQMLTNLALRGIPDIKKVFIREANVMGLDPVTETFTKKSEWMLDTE 1313

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN + VM HEDVDFTRT SN ++E  +VLGIEAVR TLL E+R VI FDG+YVNYRHL+
Sbjct: 1314 GVNLLEVMNHEDVDFTRTTSNHLIEVIQVLGIEAVRNTLLKELRGVIEFDGSYVNYRHLA 1373

Query: 546  VLV 554
            +LV
Sbjct: 1374 ILV 1376

[7][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
            RepID=Q010D7_OSTTA
          Length = 1673

 Score =  161 bits (408), Expect = 3e-38
 Identities = 81/183 (44%), Positives = 116/183 (63%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI+  FGGDL  + ++DN+ +LV+R+R+     +K                        +
Sbjct: 1229 RINEDFGGDLSCIFNDDNSEKLVLRIRIMKAEGEK-----------------------YD 1265

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            D    +++FL+++E+Q+LSNL L GIP I KVF+R+     ++  T  F K  EW+L+T+
Sbjct: 1266 DSSIEDEVFLKRIETQMLSNLALRGIPDIKKVFIREAKSNAVNPRTQLFEKHTEWMLDTE 1325

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN + VM H DVDFTRT SN ++E  ++LGIEAVR TLL E+R VI FDG+YVNYRHL+
Sbjct: 1326 GVNLLEVMAHPDVDFTRTTSNHLIEVIQILGIEAVRNTLLRELRGVIEFDGSYVNYRHLA 1385

Query: 546  VLV 554
            +LV
Sbjct: 1386 ILV 1388

[8][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
            RepID=C1MI48_9CHLO
          Length = 1694

 Score =  161 bits (408), Expect = 3e-38
 Identities = 82/183 (44%), Positives = 123/183 (67%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI+  F  DL  + ++DN+ +L++R+R+                    E + ++ A++ E
Sbjct: 1217 RINEDFQDDLSCIFNDDNSEKLIVRIRI-----------------MNSELEKEQGASQTE 1259

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            DE     +FL+++E+QLL++L L GIP I KVF+R+ N + +D  T ++ K++EW+L+T+
Sbjct: 1260 DE-----VFLKRLEAQLLNSLALRGIPDIKKVFIREANTMGLDPETETYAKKSEWMLDTE 1314

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN + VM HEDVDFTRT SN ++E  +VLGIEAVR  LL E+R VI FDG+YVNYRHL+
Sbjct: 1315 GVNLLEVMNHEDVDFTRTTSNHLIEVIQVLGIEAVRNALLKELRGVIEFDGSYVNYRHLA 1374

Query: 546  VLV 554
            +LV
Sbjct: 1375 ILV 1377

[9][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
            RepID=A4S3M0_OSTLU
          Length = 1646

 Score =  161 bits (408), Expect = 3e-38
 Identities = 88/183 (48%), Positives = 122/183 (66%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI+  F GDL  + ++DN+ +LV+R+R+     +  G+      ++ED        A  E
Sbjct: 1209 RINEDFAGDLSCIFNDDNSEKLVLRIRIM----NPEGV------KYED--------ASTE 1250

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            DE     +FL+++E+Q+LSNL L GIP I KVF+R+  +  I+S T  F K  EW+L+T+
Sbjct: 1251 DE-----VFLKRLETQMLSNLALRGIPDIKKVFIREAKQNAINSKTELFEKTTEWMLDTE 1305

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN + VM H DVDFTRT SN ++E  +VLGIEAVR TLL E+R VI FDG+YVNYRHL+
Sbjct: 1306 GVNLLEVMAHPDVDFTRTTSNHLIEVIQVLGIEAVRNTLLRELRGVIEFDGSYVNYRHLA 1365

Query: 546  VLV 554
            +LV
Sbjct: 1366 ILV 1368

[10][TOP]
>UniRef100_C5LSN9 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
            RepID=C5LSN9_9ALVE
          Length = 1667

 Score =  159 bits (402), Expect = 1e-37
 Identities = 86/182 (47%), Positives = 115/182 (63%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   +GGD+  + S+DN+  L++R+R+  + E    +S      + D         + +
Sbjct: 1252 KIVEDYGGDVQCIVSDDNSENLIVRIRLLRDTEVVLSLSLLL---YNDRVFNRPRRTDYD 1308

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
             EED     L+KVE  LLS+LTL GIPG+ K +MRQDN++   S  G+F +  EW+L+TD
Sbjct: 1309 GEEDFR--LLKKVEGSLLSDLTLKGIPGVTKCYMRQDNRVQYSSDVGTFARSREWVLDTD 1366

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            G N   V+  E VD TRT SNDIVE   VLGIEA R  LLNE+R VISFDG+YVNYRH+S
Sbjct: 1367 GCNLEQVLTMEAVDSTRTFSNDIVEILNVLGIEACRKALLNELRQVISFDGSYVNYRHMS 1426

Query: 546  VL 551
            VL
Sbjct: 1427 VL 1428

[11][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score =  158 bits (399), Expect = 3e-37
 Identities = 83/182 (45%), Positives = 117/182 (64%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F  DL  + ++DNA +L++RVR+  +   K                      E++
Sbjct: 1233 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKG---------------------EIQ 1271

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            DE   +D+FL+K+ES +L+ + L GIPGI+KVF+++ N    +   G F  E  W+L+T+
Sbjct: 1272 DEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDG-FKTEKGWMLDTE 1330

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN +AVM HEDVD TRT SN ++E  EVLGIEAVR  LL+E+R VISFDG+YVNYRHL+
Sbjct: 1331 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1390

Query: 546  VL 551
            VL
Sbjct: 1391 VL 1392

[12][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q5WMZ9_ORYSJ
          Length = 1741

 Score =  158 bits (399), Expect = 3e-37
 Identities = 83/182 (45%), Positives = 117/182 (64%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F  DL  + ++DNA +L++RVR+  +   K                      E++
Sbjct: 1180 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKG---------------------EIQ 1218

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            DE   +D+FL+K+ES +L+ + L GIPGI+KVF+++ N    +   G F  E  W+L+T+
Sbjct: 1219 DEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDG-FKTEKGWMLDTE 1277

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN +AVM HEDVD TRT SN ++E  EVLGIEAVR  LL+E+R VISFDG+YVNYRHL+
Sbjct: 1278 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1337

Query: 546  VL 551
            VL
Sbjct: 1338 VL 1339

[13][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q0DKN9_ORYSJ
          Length = 1834

 Score =  158 bits (399), Expect = 3e-37
 Identities = 83/182 (45%), Positives = 117/182 (64%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F  DL  + ++DNA +L++RVR+  +   K                      E++
Sbjct: 1233 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKG---------------------EIQ 1271

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            DE   +D+FL+K+ES +L+ + L GIPGI+KVF+++ N    +   G F  E  W+L+T+
Sbjct: 1272 DEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDG-FKTEKGWMLDTE 1330

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN +AVM HEDVD TRT SN ++E  EVLGIEAVR  LL+E+R VISFDG+YVNYRHL+
Sbjct: 1331 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1390

Query: 546  VL 551
            VL
Sbjct: 1391 VL 1392

[14][TOP]
>UniRef100_Q99366 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99366_SOYBN
          Length = 625

 Score =  157 bits (397), Expect = 5e-37
 Identities = 81/182 (44%), Positives = 117/182 (64%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +I+  F  DL  + ++DNA +L++R+R+  +   K                      E++
Sbjct: 59  KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKG---------------------EIQ 97

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
           DE   +D+FL+K+ES +L+ +TL GIP I+KVF++ + K+    V   F    EW+L+T+
Sbjct: 98  DESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIK-NTKVQKFDVNQGFKPNEEWMLDTE 156

Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
           GVN +AVM HEDVD TRT SN ++E  EVLGIEAVR  LL+E+R VISFDG+YVNYRHL+
Sbjct: 157 GVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 216

Query: 546 VL 551
           +L
Sbjct: 217 IL 218

[15][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score =  157 bits (397), Expect = 5e-37
 Identities = 84/177 (47%), Positives = 109/177 (61%)
 Frame = +3

Query: 21   FGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDA 200
            FG  L+ + S+DNA +L++R+R+    E K                          + D 
Sbjct: 1237 FGLSLNCIFSDDNAEKLILRIRMVESQETKG------------------------TDNDD 1272

Query: 201  EDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFI 380
            +D FLR++ES +LS + L GI GI KVFMR D+KI   +  G F    EW+L+TDGV+ +
Sbjct: 1273 DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKVTENGGFGVREEWILDTDGVSLL 1332

Query: 381  AVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
             VM H DVD TRT SNDIVE  +VLGIEAVR  LL E+R VISFDG+YVNYRHL++L
Sbjct: 1333 EVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAIL 1389

[16][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5Y387_SORBI
          Length = 1874

 Score =  156 bits (395), Expect = 8e-37
 Identities = 82/183 (44%), Positives = 118/183 (64%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            N I+  F GDL  + S+DNA +L++R+R+  +   +                      E+
Sbjct: 1231 NEINREFDGDLSCIFSDDNADKLILRLRIINDEASRG---------------------EI 1269

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
             D+   +++FL+K+ES +L+ ++L GIP I+KVF+++      D V+  F +  EW+L+T
Sbjct: 1270 LDDSAGDEVFLKKIESNMLAEMSLRGIPDINKVFIKEVKVNKFD-VSDGFKEHKEWMLDT 1328

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN +AVM HEDVD TRT SN + E  EVLGIEAVR  LL+E+R+VISFDG+YVNYRHL
Sbjct: 1329 DGVNLLAVMCHEDVDATRTTSNHLTEVIEVLGIEAVRRALLDELRSVISFDGSYVNYRHL 1388

Query: 543  SVL 551
            +VL
Sbjct: 1389 AVL 1391

[17][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
            thaliana RepID=RPB1_ARATH
          Length = 1840

 Score =  156 bits (394), Expect = 1e-36
 Identities = 83/182 (45%), Positives = 117/182 (64%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F  DL  + ++DNA +L++R+R+ M +E   G                    E++
Sbjct: 1234 KINLEFDDDLTCIFNDDNAQKLILRIRI-MNDEGPKG--------------------ELQ 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            DE   +D+FL+K+ES +L+ + L GIP I+KVF++Q  K   D   G F    EW+L+T+
Sbjct: 1273 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDE-EGGFKTSEEWMLDTE 1331

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN +AVM HEDVD  RT SN ++E  EVLGIEAVR  LL+E+R VISFDG+YVNYRHL+
Sbjct: 1332 GVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1391

Query: 546  VL 551
            +L
Sbjct: 1392 IL 1393

[18][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=B9FZ51_ORYSJ
          Length = 1526

 Score =  155 bits (393), Expect = 1e-36
 Identities = 81/182 (44%), Positives = 116/182 (63%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F  DL  + ++DNA +L++RVR+  +   K                      E++
Sbjct: 903  KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKG---------------------EIQ 941

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            DE   +D+FL+K+ES +L+ + L GIP I+KVF++       +   G F  +NEW+L+T+
Sbjct: 942  DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNVG-FKADNEWMLDTE 1000

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN +AVM HEDVD TRT SN ++E  EVLGIEAVR  LL+E+R VISFDG+YVNYRHL+
Sbjct: 1001 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1060

Query: 546  VL 551
            +L
Sbjct: 1061 IL 1062

[19][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           oxycercus RepID=A9QMS4_9BILA
          Length = 612

 Score =  155 bits (393), Expect = 1e-36
 Identities = 90/186 (48%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           RIH  FGGDLH + S+DNA +LV R+R+A  + DK              ++ D    +ME
Sbjct: 439 RIHCGFGGDLHTIYSDDNAEKLVFRLRIANVDTDK--------------EEPDEQVDKME 484

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D FLR VES +LS+LTL GI  I KV+M +    D K +I +  GSF    EW+
Sbjct: 485 D-----DAFLRCVESNMLSDLTLQGIETIAKVYMHEATTDDKKKIIITADGSFETIPEWI 539

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+G  +VD  RT SNDI E FEVLGIEA R  +  E++ VISFDG+YVNY
Sbjct: 540 LETDGTALLRVLGEPNVDRIRTTSNDICEIFEVLGIEAARKAIEREMKHVISFDGSYVNY 599

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 600 RHLALL 605

[20][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99368_SOYBN
          Length = 977

 Score =  155 bits (392), Expect = 2e-36
 Identities = 80/182 (43%), Positives = 117/182 (64%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +I+  F  DL  + ++DNA +L++R+R+  ++  K                      E++
Sbjct: 424 KINLEFDDDLSCIFNDDNAEKLILRIRIMNDDAPKG---------------------EVQ 462

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
           DE   +D+FL+K+E+ +L+ +TL GIP I+KVF++       D   G F    EW+L+T+
Sbjct: 463 DESAEDDVFLKKIETNMLTEMTLRGIPDINKVFIKNAKVQKFDENEG-FKSNGEWMLDTE 521

Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
           GVN +AVM HEDVD TRT SN ++E  EVLGIEAVR +LL+E+R VISFDG+YVNYRHL+
Sbjct: 522 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRIVISFDGSYVNYRHLA 581

Query: 546 VL 551
           +L
Sbjct: 582 IL 583

[21][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
            RepID=B8BAW1_ORYSI
          Length = 1449

 Score =  154 bits (389), Expect = 4e-36
 Identities = 81/182 (44%), Positives = 115/182 (63%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F  DL  + ++DNA +L++RVR+  +   K                      E++
Sbjct: 1202 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKG---------------------EIQ 1240

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            DE   +D+FL+K+ES +L+ + L GIP I+KVF++       +   G F  +NEW+L T+
Sbjct: 1241 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNVG-FKADNEWMLVTE 1299

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN +AVM HEDVD TRT SN ++E  EVLGIEAVR  LL+E+R VISFDG+YVNYRHL+
Sbjct: 1300 GVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1359

Query: 546  VL 551
            +L
Sbjct: 1360 IL 1361

[22][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=O01364_9BILA
          Length = 633

 Score =  154 bits (389), Expect = 4e-36
 Identities = 88/187 (47%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG DL+V+ ++DNA +LV R+R+  ++ DK G          DE+  D+    M
Sbjct: 438 DRIHQGFGDDLNVIYTDDNADKLVFRLRITNQDGDKGG----------DEEQVDK----M 483

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K VI +  G F    EW
Sbjct: 484 ED-----DMFLRCIESNMLSDLTLQGITSISKVYMHKPTTDDKKRVIITPEGGFKAIPEW 538

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+  + VD  RT SNDI E FE+LGIEAVR ++  E+  VISFDG+YVN
Sbjct: 539 ILETDGTALLKVLSEQHVDSVRTTSNDICEIFEILGIEAVRKSIEREMNNVISFDGSYVN 598

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 599 YRHLALL 605

[23][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
            RepID=Q84KP6_CYAME
          Length = 1819

 Score =  154 bits (388), Expect = 6e-36
 Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 15/198 (7%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRV----- 170
            R+ A FGGDL V+ S+DNA +LV+ +R+A +  +K  +        E   D   +     
Sbjct: 1225 RLRAEFGGDLSVVYSDDNAEQLVMHIRMAGDEYEKGALGVPILGESERLDDTLNLLGPGD 1284

Query: 171  ----------AAEMEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSV 320
                      A +    E+ +D+FL+++E  LL ++ L GIPGI KVF+RQ  +++ D  
Sbjct: 1285 MTAGGNQSLEALDSGTVEEQDDVFLKRIELALLEDMQLKGIPGIRKVFLRQTQRVLFDPE 1344

Query: 321  TGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRT 500
             GSF    EW+L+T+G   +AV+ H DVD  RT+SN+I E  +VLGIEA R  L NE+  
Sbjct: 1345 AGSFRSAPEWVLDTEGTALLAVLSHPDVDARRTISNEITEVLQVLGIEAARQALYNEMYA 1404

Query: 501  VISFDGAYVNYRHLSVLV 554
            V+SFDG+ V YRHL++LV
Sbjct: 1405 VLSFDGSSVGYRHLALLV 1422

[24][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5YGY9_SORBI
          Length = 1857

 Score =  154 bits (388), Expect = 6e-36
 Identities = 79/183 (43%), Positives = 117/183 (63%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            ++I+  F  DL  + ++DNA +L++R+R+  +   K                      E+
Sbjct: 1230 DKINREFDDDLSCIFNDDNADKLILRIRITNDEAPKG---------------------EI 1268

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
            +DE   +D+FL+K+E  +L+ + L GIP I+KVF+++  K+        F   NEW+L+T
Sbjct: 1269 QDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKE-GKVNTFYQDEGFKAANEWMLDT 1327

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            +GVN +AVM HEDVD TRT SN ++E  EVLGIEAVR +LL+E+R VISFDG+YVNYRHL
Sbjct: 1328 EGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHL 1387

Query: 543  SVL 551
            ++L
Sbjct: 1388 AIL 1390

[25][TOP]
>UniRef100_A9QMQ6 RNA polymerase 2 (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=A9QMQ6_9BILA
          Length = 335

 Score =  154 bits (388), Expect = 6e-36
 Identities = 88/187 (47%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG DL+V+ ++DNA +LV R+R+  ++ DK G          DE+  D+    M
Sbjct: 148 DRIHQGFGDDLNVIYTDDNADKLVFRLRITXQDGDKGG----------DEEQVDK----M 193

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K VI +  G F    EW
Sbjct: 194 ED-----DMFLRCIESNMLSDLTLQGITSISKVYMHKPTTDDKKRVIITPEGGFKAIPEW 248

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+  + VD  RT SNDI E FE+LGIEAVR ++  E+  VISFDG+YVN
Sbjct: 249 ILETDGTALLKVLSEQHVDPVRTTSNDICEIFEILGIEAVRKSIEREMNNVISFDGSYVN 308

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 309 YRHLALL 315

[26][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase n=1 Tax=Vitis
            vinifera RepID=UPI0001985649
          Length = 1848

 Score =  153 bits (387), Expect = 7e-36
 Identities = 80/182 (43%), Positives = 115/182 (63%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F  DL  + ++DNA +L++R+R+  +   K                      E++
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKG---------------------ELQ 1270

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            DE   +D+FL+K+ES +L+ + L GIP I+KVF++       D   G F  E EW+L+T+
Sbjct: 1271 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEG-FKPEVEWMLDTE 1329

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN +AVM HEDVD  RT SN ++E  EVLGIEAVR +LL+E+R VISFDG+YVNYRHL+
Sbjct: 1330 GVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLA 1389

Query: 546  VL 551
            +L
Sbjct: 1390 IL 1391

[27][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7NVN7_VITVI
          Length = 1010

 Score =  153 bits (387), Expect = 7e-36
 Identities = 80/182 (43%), Positives = 115/182 (63%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +I+  F  DL  + ++DNA +L++R+R+  +   K                      E++
Sbjct: 469 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKG---------------------ELQ 507

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
           DE   +D+FL+K+ES +L+ + L GIP I+KVF++       D   G F  E EW+L+T+
Sbjct: 508 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEG-FKPEVEWMLDTE 566

Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
           GVN +AVM HEDVD  RT SN ++E  EVLGIEAVR +LL+E+R VISFDG+YVNYRHL+
Sbjct: 567 GVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLA 626

Query: 546 VL 551
           +L
Sbjct: 627 IL 628

[28][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9TK89_PHYPA
          Length = 1646

 Score =  152 bits (384), Expect = 2e-35
 Identities = 81/182 (44%), Positives = 118/182 (64%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F  DL  + ++DNA +L++R+R+     D+A   ++T                  
Sbjct: 1220 KINLEFDDDLTCIFNDDNAEKLILRIRIM---NDEAPKGEAT------------------ 1258

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
             E+  +D+FL+K+ES +L+ + L GIP I KVF+++D K   D    +F  E EW+L+T+
Sbjct: 1259 -EQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFDENV-AFEPEKEWILDTE 1316

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN +AVM HEDVD +RT+SN ++E  EVLGIEAVR  LL E+R VISFDG+YVNYRHL+
Sbjct: 1317 GVNMLAVMCHEDVDASRTLSNHLIEVIEVLGIEAVRNALLKELRDVISFDGSYVNYRHLA 1376

Query: 546  VL 551
            +L
Sbjct: 1377 IL 1378

[29][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
           RepID=Q6E232_9PELO
          Length = 601

 Score =  152 bits (383), Expect = 2e-35
 Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH+ FG D+H + ++DNA +LV R+R+A E++   G           E+  D+    M
Sbjct: 425 DRIHSGFGQDVHTIYTDDNAEKLVFRLRIAGEDKAAEG----------QEEQVDK----M 470

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +LS+LTL GIP I KV+M Q    D K +I +  G F    EW
Sbjct: 471 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITEEGGFKSITEW 525

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 526 ILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 585

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 586 YRHLALL 592

[30][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
           nematode RepID=O01376_9BILA
          Length = 633

 Score =  152 bits (383), Expect = 2e-35
 Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH+ FG D+H + ++DNA +LV R+R+A E++   G           E+  D+    M
Sbjct: 438 DRIHSGFGQDVHTIYTDDNAEKLVFRLRIAGEDKAAEG----------QEEQVDK----M 483

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +LS+LTL GIP I KV+M Q    D K +I +  G F    EW
Sbjct: 484 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITEEGGFKSITEW 538

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 539 ILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 598

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 599 YRHLALL 605

[31][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1D
          Length = 1764

 Score =  151 bits (382), Expect = 3e-35
 Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K       +   +   D + V  +M+
Sbjct: 1252 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEVKGLQEEMDSGADEEEVVDKMD 1311

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1312 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1366

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1367 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1426

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1427 RHLALL 1432

[32][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score =  151 bits (382), Expect = 3e-35
 Identities = 79/182 (43%), Positives = 116/182 (63%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F  DL  + ++DNA +L++R+R+  +   K  ++                     
Sbjct: 1235 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEMT--------------------- 1273

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
             E+  +D+FL+K+ES +L+ + L GIP I KVF+++D K   D    +F  E EW+L+T+
Sbjct: 1274 -EQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFDENL-AFVVEQEWVLDTE 1331

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN +AVM HEDVD +RT SN ++E  EVLGIEAVR +LL E+R VISFDG+YVNYRHL+
Sbjct: 1332 GVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRNSLLKELRDVISFDGSYVNYRHLA 1391

Query: 546  VL 551
            +L
Sbjct: 1392 IL 1393

[33][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
           RepID=Q6E231_CAEBE
          Length = 596

 Score =  151 bits (382), Expect = 3e-35
 Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG D+H + ++DNA +LV R+R+A E++   G           E+  D+    M
Sbjct: 417 DRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGAEG----------QEEQVDK----M 462

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +LS+LTL GIP I KV+M Q    D K +I +  G F    +W
Sbjct: 463 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPQTDDKKRIIITPEGGFKAVADW 517

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+  + +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 518 ILETDGTALLRVLSEQQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 577

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 578 YRHLALL 584

[34][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
           dolichuroides RepID=A9QMG1_9BILA
          Length = 629

 Score =  151 bits (382), Expect = 3e-35
 Identities = 85/187 (45%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH+ FG DL+V+ ++DNA +LV R+R+  + +DKA           +E+  D+    M
Sbjct: 445 DKIHSGFGDDLNVIYTDDNADKLVFRIRITNQGDDKA-----------EEEQIDK----M 489

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GIP I KV+M +    D K V+ +  G F    +W
Sbjct: 490 ED-----DMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKKRVVVTPEGDFKHIADW 544

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+   ++D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 545 ILETDGTALLKVLSEPNIDPVRTTSNDICEIFEVLGIEAVRKSIEREMDNVISFDGSYVN 604

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 605 YRHLALL 611

[35][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
           RepID=A9QMF9_9BILA
          Length = 618

 Score =  151 bits (381), Expect = 4e-35
 Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG DL+V+ ++DNA +LV R+R+A   +DK+G  +    + ED           
Sbjct: 433 DRIHHGFGDDLNVIYTDDNADKLVFRLRIA-NVDDKSGAEEEQVDKMED----------- 480

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
                  D+FLR +ES +LS+LTL GIP I KV+M +    D K VI +  G F   ++W
Sbjct: 481 -------DVFLRCIESNMLSDLTLQGIPSISKVYMHKPNTDDKKRVIITPEGDFQYISDW 533

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    +D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 534 ILETDGTALLRVLSEPSIDAVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 593

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 594 YRHLALL 600

[36][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            elegans RepID=RPB1_CAEEL
          Length = 1852

 Score =  151 bits (381), Expect = 4e-35
 Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            +RIH  FG D+H + ++DNA +LV R+R+A E++ +A            E+  D+    M
Sbjct: 1223 DRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEA-----------QEEQVDK----M 1267

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
            ED     D+FLR +E+ +LS+LTL GIP I KV+M Q    D K +I +  G F    +W
Sbjct: 1268 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADW 1322

Query: 351  LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
            +LETDG   + V+    +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 1323 ILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 1382

Query: 531  YRHLSVL 551
            YRHL++L
Sbjct: 1383 YRHLALL 1389

[37][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMF5_9BILA
          Length = 630

 Score =  150 bits (380), Expect = 5e-35
 Identities = 86/186 (46%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           RIH  FG DL+V+ ++DNA +LV R+R+  ++ DK            DE+  D+    ME
Sbjct: 435 RIHQGFGDDLNVIYTDDNADKLVFRLRITNQDNDKG-----------DEEQIDK----ME 479

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +ES +LS+LTL GI  I KV+M +    D K ++ +  GSF    +WL
Sbjct: 480 D-----DVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKKKIVITPDGSFKAIEQWL 534

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+   +VD  RT SNDI E FE+LGIEAVR ++  E+  VISFDG+YVNY
Sbjct: 535 LETDGTALLKVLSERNVDTIRTTSNDICEIFEILGIEAVRKSIEKEMHQVISFDGSYVNY 594

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 595 RHLALL 600

[38][TOP]
>UniRef100_O77375 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
            RepID=O77375_PLAF7
          Length = 2457

 Score =  150 bits (379), Expect = 6e-35
 Identities = 83/169 (49%), Positives = 109/169 (64%), Gaps = 1/169 (0%)
 Frame = +3

Query: 48   SEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME-DEEDAEDLFLRKV 224
            ++DN +++ I+     E+ D A +  STK   ED +  ++   E     ED ED FL+K+
Sbjct: 1816 NDDNKSDITIK-----EDNDVAFMKTSTKNAEEDLELKNKNHIEHNISREDTEDTFLKKL 1870

Query: 225  ESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDV 404
              Q LS L L GI  I KV+MR+++KI  DS  G F + + W+L+TDG N   +     V
Sbjct: 1871 MEQCLSTLKLRGIENITKVYMREESKITYDSDNGKFVRSSHWVLDTDGCNLENIFCAPQV 1930

Query: 405  DFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
            DF +TVSNDIVE FEVLGIEAVR  LL E+RTVISFD +YVNYRHLS+L
Sbjct: 1931 DFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSIL 1979

[39][TOP]
>UniRef100_P14248 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Plasmodium
            falciparum CDC/Honduras RepID=RPB1_PLAFD
          Length = 2452

 Score =  150 bits (379), Expect = 6e-35
 Identities = 83/169 (49%), Positives = 109/169 (64%), Gaps = 1/169 (0%)
 Frame = +3

Query: 48   SEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME-DEEDAEDLFLRKV 224
            ++DN +++ I+     E+ D A +  STK   ED +  ++   E     ED ED FL+K+
Sbjct: 1818 NDDNKSDITIK-----EDNDVAFMKTSTKNAEEDLELKNKNHIEHNISREDTEDTFLKKL 1872

Query: 225  ESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDV 404
              Q LS L L GI  I KV+MR+++KI  DS  G F + + W+L+TDG N   +     V
Sbjct: 1873 MEQCLSTLKLRGIENITKVYMREESKITYDSDNGKFVRSSHWVLDTDGCNLENIFCAPQV 1932

Query: 405  DFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
            DF +TVSNDIVE FEVLGIEAVR  LL E+RTVISFD +YVNYRHLS+L
Sbjct: 1933 DFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSIL 1981

[40][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            briggsae RepID=RPB1_CAEBR
          Length = 1853

 Score =  150 bits (379), Expect = 6e-35
 Identities = 85/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            +RIH  FG D+H + ++DNA +LV R+R+A E++   G           E+  D+    M
Sbjct: 1227 DRIHGGFGQDVHTIYTDDNAEKLVFRLRIAGEDKGAEG----------QEEQVDK----M 1272

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
            ED     D+FLR +E+ +LS+LTL GIP I KV+M Q    D K +I +  G F    +W
Sbjct: 1273 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADW 1327

Query: 351  LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
            +LETDG   + V+    +D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 1328 ILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVN 1387

Query: 531  YRHLSVL 551
            YRHL++L
Sbjct: 1388 YRHLALL 1394

[41][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score =  150 bits (378), Expect = 8e-35
 Identities = 84/182 (46%), Positives = 110/182 (60%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   FGGDLHV+ S+DNAA+L + +R+  + E+            E+E   D       
Sbjct: 1224 RIAVDFGGDLHVIYSDDNAAKLSLHIRIKNQEEEAKNQ--------EEEASGD------- 1268

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
                 E  FLR++E  +L+ + L GI  I KVFMR+  KI  D+    +  E EW+L+T+
Sbjct: 1269 -----EHEFLRRIEGDMLTEMALRGIAQIRKVFMREAKKITFDA-DHKYMHEKEWVLDTE 1322

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            G N + VM  +DVD TRT SNDIVE  +VLGIEAVR   L E+R VISFDG+YVNYRHL+
Sbjct: 1323 GCNLLEVMSCQDVDHTRTTSNDIVEIIQVLGIEAVRQAALKELRDVISFDGSYVNYRHLA 1382

Query: 546  VL 551
             L
Sbjct: 1383 TL 1384

[42][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
            tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
          Length = 1706

 Score =  150 bits (378), Expect = 8e-35
 Identities = 79/182 (43%), Positives = 114/182 (62%)
 Frame = +3

Query: 9    IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 188
            I   +G DL+V  ++DNA E+V+R+R+  +    +G +D      +D+ +  +       
Sbjct: 1172 IGEEYGADLNVEVTDDNADEMVVRIRIVNDTPFNSGQTDEGGNLMDDQPEVGQ------- 1224

Query: 189  EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDG 368
                +D+FL+++E  +LS+L L G+  + KVFMR   K  +      F   +EW+LETDG
Sbjct: 1225 ---EDDIFLKRLEKSMLSSLKLRGVDHVKKVFMRGGAKRTVWDDVKGFGVRDEWVLETDG 1281

Query: 369  VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSV 548
             N +AV+G + VD TR+VSNDIVE F  LGIE VR  LL+E+R VISFDG+YVNYRHL+ 
Sbjct: 1282 TNLMAVLGVDYVDGTRSVSNDIVEVFVALGIEGVRGALLSELRNVISFDGSYVNYRHLAC 1341

Query: 549  LV 554
            LV
Sbjct: 1342 LV 1343

[43][TOP]
>UniRef100_A9QME5 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
           RepID=A9QME5_9BILA
          Length = 371

 Score =  150 bits (378), Expect = 8e-35
 Identities = 84/187 (44%), Positives = 119/187 (63%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH+ FG DL+V+ ++DNA +LV R+R+  + +DK            +E+  D+    M
Sbjct: 197 DKIHSGFGDDLNVIYTDDNADKLVFRIRITNQGDDKG-----------EEEQIDK----M 241

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GIP I KV+M +    D K V+ +  G F    +W
Sbjct: 242 ED-----DMFLRCIESNMLSDLTLQGIPSIAKVYMHKPNTDDKKRVVVTPEGDFKHIADW 296

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+   ++D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 297 ILETDGTALLKVLSEPNIDPVRTTSNDICEIFEVLGIEAVRKSIEREMDNVISFDGSYVN 356

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 357 YRHLALL 363

[44][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
            RepID=B8BQ02_THAPS
          Length = 1627

 Score =  149 bits (377), Expect = 1e-34
 Identities = 82/178 (46%), Positives = 112/178 (62%)
 Frame = +3

Query: 21   FGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDA 200
            +G DL+V+ S+DNA +LV R+R+  +     G+ +   P   D    D V    ED    
Sbjct: 1238 YGSDLNVLVSDDNADDLVARIRIVNDLPMVQGMDEDGNPIMTD----DDVELGQED---- 1289

Query: 201  EDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFI 380
             D+FL+++E  +L  L L G+  + KVFMR   K  +      F   +EW+LETDG N +
Sbjct: 1290 -DVFLKRLEKNMLHTLKLRGVDDVKKVFMRGGAKKTVWDDEKGFGITDEWVLETDGTNLM 1348

Query: 381  AVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVLV 554
            +V+G + VD TRT+SNDIVE F VLGIE VRA +L+E+R VISFDG+YVNYRHL+ LV
Sbjct: 1349 SVLGIDYVDATRTISNDIVEVFMVLGIEGVRAAILSELRNVISFDGSYVNYRHLACLV 1406

[45][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
           RepID=Q6E233_CAERE
          Length = 611

 Score =  149 bits (376), Expect = 1e-34
 Identities = 86/187 (45%), Positives = 115/187 (61%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG D+H + ++DNA +LV R+R+A   EDK   +         E+  D+    M
Sbjct: 425 DRIHGGFGNDVHTIYTDDNAEKLVFRLRIA--GEDKGADTQ--------EEQVDK----M 470

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +LS+LTL GIP I KV+M Q    D K +I +  G F    +W
Sbjct: 471 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADW 525

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 526 ILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 585

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 586 YRHLALL 592

[46][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SXC0_RICCO
          Length = 1855

 Score =  149 bits (375), Expect = 2e-34
 Identities = 79/182 (43%), Positives = 115/182 (63%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F  DL  + ++DNA +L++R+R+  +   K                      E+ 
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKG---------------------ELN 1270

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            DE   +D+FL+K+ES +L+ + L GIP I+KVF++Q      D   G  T E EW+L+T+
Sbjct: 1271 DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKTIE-EWMLDTE 1329

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN +AVM +E+VD  RT SN ++E  EVLGIEAVR +LL+E+R VISFDG+YVNYRHL+
Sbjct: 1330 GVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLA 1389

Query: 546  VL 551
            +L
Sbjct: 1390 IL 1391

[47][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           drosophilae RepID=Q6E224_9PELO
          Length = 633

 Score =  149 bits (375), Expect = 2e-34
 Identities = 82/187 (43%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH+ FG D+H + ++DNA +LV R+R+A +++ +             E+  D+    M
Sbjct: 441 DRIHSGFGNDVHTIYTDDNAEKLVFRLRIAGDDKGEG-----------QEEQVDK----M 485

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +L++LTL GIP I KV+M Q    D K  + +  G F    EW
Sbjct: 486 ED-----DVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKKRTVITDEGGFKSITEW 540

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+  + +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 541 ILETDGTALLRVLAEQQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 600

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 601 YRHLALL 607

[48][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
           RepID=Q6E223_9PELO
          Length = 606

 Score =  149 bits (375), Expect = 2e-34
 Identities = 82/187 (43%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH+ FG D+H + ++DNA +LV R+R+A +++ +             E+  D+    M
Sbjct: 425 DRIHSGFGNDVHTIYTDDNAEKLVFRLRIAGDDKGEG-----------QEEQVDK----M 469

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +L++LTL GIP I KV+M Q    D K  + +  G F    EW
Sbjct: 470 ED-----DVFLRCIEANMLADLTLQGIPSISKVYMNQPNTDDKKRTVITDEGGFKSITEW 524

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+  + +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 525 ILETDGTALLRVLAEQQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 584

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 585 YRHLALL 591

[49][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
           RepID=A9QME6_9PELO
          Length = 526

 Score =  149 bits (375), Expect = 2e-34
 Identities = 82/187 (43%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +++H+ FG DL+V+ ++DNA +LV R+R+  +++  +          E E+  D+    M
Sbjct: 339 DKVHSGFGDDLNVIYTDDNADKLVFRLRITNQDDKSS----------ESEEQVDK----M 384

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS LTL GI  I KV+M +    D K +  +  GSF  + EW
Sbjct: 385 ED-----DVFLRCIESNMLSELTLQGIQQISKVYMHKPSTDDKKKIEIAPDGSFKSKAEW 439

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG+  + V+  +++D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 440 ILETDGIGLLRVLSEQNIDPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 499

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 500 YRHLALL 506

[50][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
           RepID=Q6E227_CAEJA
          Length = 608

 Score =  148 bits (374), Expect = 2e-34
 Identities = 86/187 (45%), Positives = 115/187 (61%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG D+H + ++DNA +LV R+R+A   EDK   +         E+  D+    M
Sbjct: 425 DRIHGGFGSDVHTIYTDDNAEKLVFRLRIA--GEDKGADTQ--------EEQVDK----M 470

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +LS+LTL GIP I KV+M Q    D K +I +  G F    +W
Sbjct: 471 ED-----DVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADW 525

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 526 ILETDGTALLRVLSERQIDPVRTSSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVN 585

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 586 YRHLALL 592

[51][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QMG0_OSCTI
          Length = 629

 Score =  148 bits (374), Expect = 2e-34
 Identities = 84/187 (44%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IHA FG DL+V+ ++DNA +LV R+R+  + +DK            +E+  D+    M
Sbjct: 442 DKIHAGFGDDLNVIYTDDNAEKLVFRIRITNQGDDKLA----------EEEQIDK----M 487

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K VI +  G F   ++W
Sbjct: 488 ED-----DMFLRCIESNMLSDLTLQGISSIAKVYMYKPNTDDKKKVIITPEGDFKHISDW 542

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    +D  +T SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 543 ILETDGTALLRVLSEPSIDPAKTTSNDICEIFEVLGIEAVRKSIEKEMNNVISFDGSYVN 602

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 603 YRHLALL 609

[52][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
           RepID=A9QMF2_9PELO
          Length = 629

 Score =  148 bits (374), Expect = 2e-34
 Identities = 88/187 (47%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG DL+V+ ++DNA +LV R+R+  ++ DK           E E+  D+    M
Sbjct: 438 DRIHQGFGDDLNVIYTDDNADKLVFRLRITNQDADKG----------ESEEQVDK----M 483

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K +I +  G F    EW
Sbjct: 484 ED-----DVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKKRMIITEEGGFKAIPEW 538

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+  + VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 539 LLETDGTALLRVLSEQSVDPIRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYVN 598

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 599 YRHLALL 605

[53][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
           RepID=A9QMF1_9PELO
          Length = 605

 Score =  148 bits (374), Expect = 2e-34
 Identities = 87/186 (46%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           RIH  FG DL+V+ ++DNA +LV R+R+  ++ DK           E E+  D+    ME
Sbjct: 420 RIHQGFGDDLNVIYTDDNADKLVFRLRITNQDADKG----------ETEESVDK----ME 465

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +ES +LS+LTL GI  I KV+M +    D K ++ +  G F    EWL
Sbjct: 466 D-----DVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKKRMVITPEGGFKAIPEWL 520

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+  + VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 521 LETDGTALLRVLAEQSVDPVRTSSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNY 580

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 581 RHLALL 586

[54][TOP]
>UniRef100_A9QME9 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata
           RepID=A9QME9_9BILA
          Length = 378

 Score =  148 bits (374), Expect = 2e-34
 Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG DL+V+ ++DNA +LV R+R++ +++DKA           +E+  D+    M
Sbjct: 192 DKIHQGFGDDLNVIYADDNADKLVFRLRISNQSDDKA-----------EEEQIDK----M 236

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K VI +  G F    EW
Sbjct: 237 ED-----DVFLRCIESNMLSDLTLQGISSIAKVYMHKPTSDDKKKVIITGDGGFRAIPEW 291

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+  + +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 292 LLETDGTALLKVLSEQYIDPVRTSSNDICEIFEVLGIEAVRKAIEREMNNVISFDGSYVN 351

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 352 YRHLALL 358

[55][TOP]
>UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QME4_OSCTI
          Length = 446

 Score =  148 bits (374), Expect = 2e-34
 Identities = 84/187 (44%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IHA FG DL+V+ ++DNA +LV R+R+  + +DK            +E+  D+    M
Sbjct: 264 DKIHAGFGDDLNVIYTDDNAEKLVFRIRITNQGDDKLA----------EEEQIDK----M 309

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K VI +  G F   ++W
Sbjct: 310 ED-----DMFLRCIESNMLSDLTLQGISSIAKVYMYKPNTDDKKKVIITPEGDFKHISDW 364

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    +D  +T SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 365 ILETDGTALLRVLSEPSIDPAKTTSNDICEIFEVLGIEAVRKSIEKEMNNVISFDGSYVN 424

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 425 YRHLALL 431

[56][TOP]
>UniRef100_A9QME3 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius insectivora
           RepID=A9QME3_9BILA
          Length = 246

 Score =  148 bits (374), Expect = 2e-34
 Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH+ FG DL+V+ ++DNA +LV R+R+   + DKA           DE+  D+    M
Sbjct: 59  DKIHSGFGDDLNVIYTDDNADKLVFRIRITNNDGDKA-----------DEEQIDK----M 103

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K VI +  G F    +W
Sbjct: 104 ED-----DMFLRCIESNMLSDLTLQGISSISKVYMHKPQTDDKKRVIITPDGDFKAIADW 158

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    +D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 159 ILETDGTALLRVLSEPMIDPVRTTSNDICEIFEVLGIEAVRKSIEREMHNVISFDGSYVN 218

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 219 YRHLALL 225

[57][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           regenfussi RepID=A9QMG9_9BILA
          Length = 620

 Score =  148 bits (373), Expect = 3e-34
 Identities = 89/187 (47%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIHA FGGDL+V+ ++DNA +LV R+R+A  + DK           E E+  D+    M
Sbjct: 434 DRIHAGFGGDLNVIYTDDNAEKLVFRLRIANADNDKG----------ESEEQVDK----M 479

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEW 350
           E+     D+FL  VES +LS+LTL GI  I KV M      D K  I +  GSF    EW
Sbjct: 480 EB-----DVFLXCVESNMLSDLTLZGIZSIAKVCMHXPTTDDKKRTIXTADGSFKSIPEW 534

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LL TDG   + V+  ++V   RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 535 LLXTDGTALLKVLSEQNVHPIRTTSNDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVN 594

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 595 YRHLALL 601

[58][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QME0_9PELO
          Length = 633

 Score =  148 bits (373), Expect = 3e-34
 Identities = 88/187 (47%), Positives = 117/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IHA FG DL+V+ ++DNA +LV R+R+   N+D  G          DE+  D+    M
Sbjct: 438 DKIHAGFGDDLNVIYTDDNADKLVFRLRIT--NQDDKGT---------DEEQIDK----M 482

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS LTL GI  I KV+M +    D K VI +  G F    +W
Sbjct: 483 ED-----DVFLRCIESNMLSELTLQGITSISKVYMHKPMTDDKKRVIITPEGGFKAIADW 537

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+  + +D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 538 LLETDGTALLKVLSEQHIDPIRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 597

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 598 YRHLALL 604

[59][TOP]
>UniRef100_A9QMQ4 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
           RepID=A9QMQ4_9BILA
          Length = 380

 Score =  147 bits (372), Expect = 4e-34
 Identities = 87/187 (46%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG DL+V+ ++DNA +LV R+R++ + +DKA           +E+  D+    M
Sbjct: 201 DKIHQGFGDDLNVIYADDNAEKLVFRLRISNQADDKA-----------EEEQIDK----M 245

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K VI +  G F    EW
Sbjct: 246 ED-----DVFLRCIESNMLSDLTLQGINSIAKVYMHKPTSDDKKKVIITPEGGFKAIPEW 300

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+  + +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 301 LLETDGTALLKVLSEQYIDPVRTSSNDICEIFEVLGIEAVRKAIEREMNNVISFDGSYVN 360

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 361 YRHLALL 367

[60][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
           RepID=A9QMF3_9BILA
          Length = 626

 Score =  147 bits (372), Expect = 4e-34
 Identities = 88/187 (47%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG DL+V+ ++DNA +LV R+R+  ++EDK           E E+  D+    M
Sbjct: 438 DRIHQGFGDDLNVIYTDDNADKLVFRLRITNQSEDKG----------ETEEQVDK----M 483

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K ++ +  G F    EW
Sbjct: 484 ED-----DVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKKRMVITPEGGFKAIPEW 538

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+    VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 539 LLETDGTALLRVLAESAVDPIRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYVN 598

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 599 YRHLALL 605

[61][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
          Length = 1935

 Score =  147 bits (372), Expect = 4e-34
 Identities = 84/186 (45%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1199 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1245

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1246 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1300

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ I V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1301 LETDGVSLIRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1360

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1361 RHLALL 1366

[62][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
           wirthi RepID=Q6GYH6_9BILA
          Length = 630

 Score =  147 bits (371), Expect = 5e-34
 Identities = 83/189 (43%), Positives = 114/189 (60%), Gaps = 6/189 (3%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           N+IHA FG DL+V+ ++DNA +LV+R+R+A  ++DK  + +    + ED           
Sbjct: 444 NKIHAGFGDDLNVIYTDDNAEKLVLRLRIAGGSDDKGDVGEEQVDKMED----------- 492

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN------ 344
                  D FLR +E+ +LS+L+L GIP I KV+M + N    D      T+E       
Sbjct: 493 -------DTFLRCIEANMLSDLSLLGIPAIGKVYMHKPN--TDDKKRFXITREGGSKAIA 543

Query: 345 EWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
           +WLLETDG   + V+   D+D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+Y
Sbjct: 544 DWLLETDGTALLKVLSERDIDQIRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSY 603

Query: 525 VNYRHLSVL 551
           VNYRHL++L
Sbjct: 604 VNYRHLALL 612

[63][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
           strongyloides dermatitica RepID=A9QMF0_9PELO
          Length = 633

 Score =  147 bits (371), Expect = 5e-34
 Identities = 87/186 (46%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           RIH  FG DL+V+ ++DNA +LV R+R+  ++ DK           E E+  D+    ME
Sbjct: 444 RIHQGFGDDLNVIYTDDNADKLVFRLRITNQDMDKG----------ESEESVDK----ME 489

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +ES +LS+LTL GI  I KV+M +    D K ++ +  G F    EWL
Sbjct: 490 D-----DVFLRCIESNMLSDLTLQGIEAITKVYMHKPTTDDKKRMVITPEGGFKAIPEWL 544

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+  + VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 545 LETDGTALLRVLAEQSVDPVRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYVNY 604

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 605 RHLALL 610

[64][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
           halicti RepID=P90678_9BILA
          Length = 631

 Score =  147 bits (370), Expect = 7e-34
 Identities = 86/187 (45%), Positives = 118/187 (63%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG DL+V+ ++DNA +LV R+R+   N+DK G          +E+  D+    M
Sbjct: 438 DKIHHGFGDDLNVIYTDDNADKLVFRLRIT--NQDKGG----------EEEQVDK----M 481

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +LS+LTL GI  I KV+M +    D K  I +  GSF    EW
Sbjct: 482 ED-----DMFLRCIEANMLSDLTLQGIEAISKVYMHKPTTDDKKKTIVTPDGSFKAIPEW 536

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+  ++VD  RT SNDI E FE+LGIEAVR  +  E+  VISFDG+YVN
Sbjct: 537 ILETDGTALLKVLSEQNVDQHRTYSNDICEIFEILGIEAVRKAIEREMHQVISFDGSYVN 596

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 597 YRHLALL 603

[65][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           JU727 RepID=A9QMQ9_9PELO
          Length = 620

 Score =  147 bits (370), Expect = 7e-34
 Identities = 83/187 (44%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG D+H + ++DNA +LV R+R++ +++   G           E+  D+    M
Sbjct: 442 DRIHGGFGTDVHTIYTDDNAEKLVFRLRISGDDKGDGG----------QEEQVDK----M 487

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +LS+LTL GIP I KV+M Q    D K +I +  G F    +W
Sbjct: 488 ED-----DVFLRCIEANMLSDLTLQGIPQISKVYMSQPNTDDKKRIIITPEGGFKAVADW 542

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    +D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 543 ILETDGTALLRVLSERQIDPIRTTSNDICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVN 602

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 603 YRHLALL 609

[66][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase II subunit A) (DNA-directed RNA polymerase III
            largest subunit) n=1 Tax=Equus caballus
            RepID=UPI0001796DD3
          Length = 1834

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[67][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF13
          Length = 1932

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[68][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF12
          Length = 1970

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[69][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
            isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
          Length = 1970

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[70][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2C
          Length = 1888

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[71][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B29
          Length = 1891

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1203 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1249

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1250 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1304

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1305 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1364

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1365 RHLALL 1370

[72][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B28
          Length = 1908

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1220 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1266

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1267 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1321

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1322 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1381

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1382 RHLALL 1387

[73][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 17 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B26
          Length = 1684

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1224 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1270

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1271 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1325

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1326 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1385

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1386 RHLALL 1391

[74][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 16 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B25
          Length = 1752

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1224 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1270

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1271 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1325

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1326 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1385

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1386 RHLALL 1391

[75][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B24
          Length = 1924

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1236 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1282

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1283 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1337

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1338 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1397

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1398 RHLALL 1403

[76][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B21
          Length = 1922

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[77][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B20
          Length = 1923

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1235 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1281

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1282 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1336

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1337 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1396

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1397 RHLALL 1402

[78][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B17
          Length = 1788

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[79][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B16
          Length = 1922

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[80][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25C
          Length = 1968

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1236 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1282

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1283 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1337

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1338 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1397

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1398 RHLALL 1403

[81][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25B
          Length = 1932

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[82][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
          Length = 1970

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[83][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
            familiaris RepID=UPI0001951285
          Length = 1969

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[84][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
            RepID=O35559_CRIGR
          Length = 1970

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[85][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
          Length = 1966

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[86][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
          Length = 1943

 Score =  146 bits (369), Expect = 9e-34
 Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            ++IH  FG DL+V+ ++DNA +LV R+R+  +  DK           EDEQ        M
Sbjct: 1298 DKIHQGFGDDLNVIYTDDNAEKLVFRLRITNQEGDKGN---------EDEQ-----VERM 1343

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
            ED     D+FLR +E+ +LS+LTL GI  I KV+M +    D K V+ +  G F    EW
Sbjct: 1344 ED-----DVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKKRVVITPDGGFKAIPEW 1398

Query: 351  LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
            LLETDG     V+  ++VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 1399 LLETDGTALAKVLSEQNVDPIRTTSNDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVN 1458

Query: 531  YRHLSVL 551
            YRHL++L
Sbjct: 1459 YRHLALL 1465

[87][TOP]
>UniRef100_B4DET1 cDNA FLJ53860, highly similar to DNA-directed RNA polymerase II
           largest subunit (EC 2.7.7.6) n=1 Tax=Homo sapiens
           RepID=B4DET1_HUMAN
          Length = 855

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 133 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 179

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 180 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 234

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 235 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 294

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 295 RHLALL 300

[88][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
          Length = 1970

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[89][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
            RepID=RPB1_MOUSE
          Length = 1970

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[90][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
            RepID=RPB1_HUMAN
          Length = 1970

 Score =  146 bits (369), Expect = 9e-34
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K              Q+ + V  +M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM-------------QEEEEVVDKMD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[91][TOP]
>UniRef100_Q4XE57 Putative uncharacterized protein (Fragment) n=1 Tax=Plasmodium
           chabaudi RepID=Q4XE57_PLACH
          Length = 871

 Score =  146 bits (368), Expect = 1e-33
 Identities = 76/158 (48%), Positives = 101/158 (63%), Gaps = 7/158 (4%)
 Frame = +3

Query: 99  NEDKAGISDSTKPRFEDEQDADRVAAEMEDE-------EDAEDLFLRKVESQLLSNLTLS 257
           N    G S+ T  + +DE +       + +E       ED ED FL+K+  Q LS+L L 
Sbjct: 406 NSGGMGGSNKTMGKGDDENNQKNRKKNLNNENNTMISKEDTEDTFLKKLMEQCLSSLKLR 465

Query: 258 GIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSNDIV 437
           G+  I KV+MR+++KI  DS  G F + + W+L+TDG N  ++     VDF +T+SNDIV
Sbjct: 466 GVENITKVYMREESKITYDSENGKFVRSSHWVLDTDGCNLESIFCAPSVDFKKTISNDIV 525

Query: 438 ETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
           E FEVLGIEAVR  LL E+RTVISFD +YVNYRHLS+L
Sbjct: 526 EIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSIL 563

[92][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
           RepID=A9QMF8_9BILA
          Length = 621

 Score =  146 bits (368), Expect = 1e-33
 Identities = 84/187 (44%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG DL+V+ ++DNA +LV R+R+   N+D  G  +    + ED           
Sbjct: 442 DKIHQGFGDDLNVIYTDDNAEKLVFRIRLT--NQDDKGAEEEQIDKMED----------- 488

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
                  D+FLR +ES +LS+LTL GI  I KV+M +    D K +I +  G+F    EW
Sbjct: 489 -------DVFLRCIESNMLSDLTLQGITSIGKVYMHKPKTDDKKRMIITPEGAFKAIREW 541

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+    VD  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 542 LLETDGTALLKVLSERHVDAVRTSSNDICEIFEVLGIEAVRKSIEKEMNNVISFDGSYVN 601

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 602 YRHLALL 608

[93][TOP]
>UniRef100_A9QMF7 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera pseudoteres
           RepID=A9QMF7_9PELO
          Length = 366

 Score =  146 bits (368), Expect = 1e-33
 Identities = 87/188 (46%), Positives = 117/188 (62%), Gaps = 5/188 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVA-MENEDKAGISDSTKPRFEDEQDADRVAAE 179
           +R+H  FG DL+V+ ++DNA +LV R+R+   +N DK           E E+  D+    
Sbjct: 187 DRVHQGFGDDLNVIYTDDNADKLVFRLRITNQDNSDKG----------ESEEQVDK---- 232

Query: 180 MEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENE 347
           MED     D+FLR +ES +LS+LTL GI  I KV+M +    D K +I +  G F    E
Sbjct: 233 MED-----DVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKKRMIITEEGGFKAIPE 287

Query: 348 WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
           W+LETDG   + V+  ++VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YV
Sbjct: 288 WILETDGTALLRVLSEQNVDPIRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYV 347

Query: 528 NYRHLSVL 551
           NYRHL++L
Sbjct: 348 NYRHLALL 355

[94][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
            RepID=UPI0000546D90
          Length = 1972

 Score =  145 bits (367), Expect = 1e-33
 Identities = 85/186 (45%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K           EDE+  D+    M+
Sbjct: 1231 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQ---------EDEEVVDK----MD 1277

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1278 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1332

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1333 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1392

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1393 RHLALL 1398

[95][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E658E
          Length = 1628

 Score =  145 bits (367), Expect = 1e-33
 Identities = 85/186 (45%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K           EDE+  D+    M+
Sbjct: 1232 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQ---------EDEEVVDK----MD 1278

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1279 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1333

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1334 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1393

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1394 RHLALL 1399

[96][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
           RepID=A9QMH3_9BILA
          Length = 619

 Score =  145 bits (367), Expect = 1e-33
 Identities = 83/187 (44%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG DL+V+ ++DNA +LV R+R+   N+D  G  +    + ED           
Sbjct: 434 DKIHQGFGDDLNVIYTDDNADKLVFRLRIT--NQDDKGAEEEQIDKMED----------- 480

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
                  D+FLR +ES +LS+LTL GI  I KV+M +    D K VI +  G F    +W
Sbjct: 481 -------DVFLRCIESNMLSDLTLQGITSIQKVYMHKPQTDDKKRVIITPEGGFKSIADW 533

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+  + +D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 534 LLETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 593

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 594 YRHLALL 600

[97][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
           RepID=A9QMF4_9BILA
          Length = 597

 Score =  145 bits (367), Expect = 1e-33
 Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG DL+V+ ++D A +LV R+R+  + EDK G          +E+  D+    M
Sbjct: 400 DRIHQGFGDDLNVIYTDDXADKLVFRLRITNQAEDKGG----------EEEQVDK----M 445

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K ++ +  G +    EW
Sbjct: 446 ED-----DVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKKRMVITPEGGYKAIPEW 500

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+  + VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 501 LLETDGTALLKVLAEKHVDPVRTSSNDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVN 560

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 561 YRHLALL 567

[98][TOP]
>UniRef100_A9QMR4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditis blumi
           RepID=A9QMR4_9BILA
          Length = 193

 Score =  145 bits (366), Expect = 2e-33
 Identities = 82/187 (43%), Positives = 115/187 (61%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG DL+V+ ++DNA +LV R+R+A   +DKAG  +    + ED           
Sbjct: 13  DKIHHGFGDDLNVIYTDDNADKLVFRLRIA-NPDDKAGAEEEQIDKMED----------- 60

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEW 350
                  D+FLR +ES +LS+LTL GI  I KV+M      D K ++ +  G+F    +W
Sbjct: 61  -------DVFLRCIESNMLSDLTLQGISSISKVYMHTPNTDDKKRIVITPEGTFQAIPDW 113

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+   ++D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 114 ILETDGTALLRVLSEPNIDPVRTTSNDICEIFEVLGIEAVRKSIEREMYNVISFDGSYVN 173

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 174 YRHLALL 180

[99][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
           RepID=A9QMF6_PRIPA
          Length = 583

 Score =  145 bits (366), Expect = 2e-33
 Identities = 85/186 (45%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +IH  FG DL+V+ ++DNA +LV R+R+   N+DK               D++    +ME
Sbjct: 406 KIHNGFGDDLNVIYTDDNADKLVFRLRIT--NQDKG--------------DSEEQVDKME 449

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +ES +LS+LTL GI  I KV+M +    D K  I +  GSF    EW+
Sbjct: 450 D-----DVFLRCIESNMLSDLTLQGIESISKVYMHKPTTDDKKRTIITPDGSFKAIAEWI 504

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+  ++VD  RT SNDI E FE+LGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 505 LETDGTALLRVLSEKNVDPARTTSNDICEIFEILGIEAVRKAIEREMHQVISFDGSYVNY 564

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 565 RHLALL 570

[100][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
           mediterranea RepID=A9QME7_9PELO
          Length = 618

 Score =  145 bits (366), Expect = 2e-33
 Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG DL+V+ ++DNA +LV R+R+   N+D  G          DE+  D+    M
Sbjct: 439 DKIHQGFGDDLNVIYTDDNADKLVFRLRIT--NQDDKGA---------DEEQVDK----M 483

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +LS+LTL GI  I KV+M +    D K V+ +  G F    EW
Sbjct: 484 ED-----DVFLRCIEANMLSDLTLQGITSISKVYMHKPTTDDKKRVVITPEGGFKAIPEW 538

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+  + +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 539 LLETDGTALLKVLSEQHIDPIRTSSNDICEIFEVLGIEAVRKAIEREMNNVISFDGSYVN 598

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 599 YRHLALL 605

[101][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
          Length = 1913

 Score =  145 bits (365), Expect = 3e-33
 Identities = 84/186 (45%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K           E+E+  D+    M+
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMX---------EEEEVVDK----MD 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1336 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[102][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
           RepID=Q6E228_9BILA
          Length = 621

 Score =  145 bits (365), Expect = 3e-33
 Identities = 83/187 (44%), Positives = 117/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG DL+V+ ++DNA +LV R+R+   ++  A           +E+  D+    M
Sbjct: 442 DKIHQGFGDDLNVIYTDDNADKLVFRLRITSSDDKGA-----------EEEQIDK----M 486

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL G+  I KV+M +    D K +I +  G+F    EW
Sbjct: 487 ED-----DVFLRCIESNMLSDLTLQGVTQISKVYMHKPTTDDKKRIIITPEGAFKAIREW 541

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+  + +D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 542 LLETDGTALLKVLSEQHIDPARTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 601

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 602 YRHLALL 608

[103][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
           RepID=A9QMG8_9BILA
          Length = 587

 Score =  145 bits (365), Expect = 3e-33
 Identities = 86/180 (47%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH+ FGGDL+V+ ++DNA +LV R+R+A  + DK              + AD    +M
Sbjct: 426 DRIHSGFGGDLNVIYTDDNAEKLVFRLRIANADNDKG-------------EGADEQVDKM 472

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR VES +LS+LTL GI  I KV+M +    D K  I +  GSF    EW
Sbjct: 473 ED-----DVFLRCVESNMLSDLTLQGIEAIAKVYMHKPTTDDKKKTIVTQDGSFKSIAEW 527

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+  ++VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 528 LLETDGTALLKVLSEQNVDPVRTTSNDICEIFEVLGIEAVRKAIEREMNQVISFDGSYVN 587

[104][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
           RepID=P91819_ZELPU
          Length = 629

 Score =  144 bits (364), Expect = 3e-33
 Identities = 86/186 (46%), Positives = 112/186 (60%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +IH  FG DLHV+ ++DNA +LV  +R+     DK           E E+  D+    ME
Sbjct: 436 KIHKGFGEDLHVIYTDDNADKLVFHIRLTNSTTDK-----------ESEEQIDK----ME 480

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D FL+ +ES +LS+LTL GI  I KV+M +    D K V  +  GSF   +EW+
Sbjct: 481 D-----DTFLKCIESNMLSDLTLQGIEAISKVYMHKPQTDDKKRVEVTQDGSFRMVSEWM 535

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+   +VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 536 LETDGTALLRVLSEPNVDPIRTYSNDICEIFEVLGIEAVRKAIEREMNQVISFDGSYVNY 595

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 596 RHLALL 601

[105][TOP]
>UniRef100_A9QMP4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QMP4_9BILA
          Length = 205

 Score =  144 bits (364), Expect = 3e-33
 Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG DL+V+ ++DNA +LV R+R+   N+D  G          DE+  D+    M
Sbjct: 19  DKIHQGFGDDLNVIYTDDNADKLVFRLRIT--NQDDKGA---------DEEQIDK----M 63

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K  I +  G F    +W
Sbjct: 64  ED-----DVFLRCIESNMLSDLTLQGITSICKVYMHKPQTDDKKRTIITPEGGFKSIADW 118

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+  + +D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 119 LLETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVN 178

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 179 YRHLALL 185

[106][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8Q5I6_MALGO
          Length = 1607

 Score =  144 bits (364), Expect = 3e-33
 Identities = 82/186 (44%), Positives = 114/186 (61%), Gaps = 2/186 (1%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            ++I A FG D+ VM SEDNA ELV+R+R+   + DK                      E+
Sbjct: 1019 SKIGAMFGRDIFVMHSEDNAEELVLRIRIVDNDPDK----------------------EV 1056

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIV--IDSVTGSFTKENEWLL 356
            + EED   +FL+ +  Q+L+++ L G+PGI KVF+ + +KI    D  TG +    E++L
Sbjct: 1057 QGEED---VFLKSLAQQMLTDIALKGVPGISKVFIVKQDKITRRFDPETGEWDSLKEYVL 1113

Query: 357  ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
            ETDG N   V+  + VD +RT+SN+ VE F V GIEA R +LL EIR VI FDG+YVNYR
Sbjct: 1114 ETDGTNLKDVLAVDGVDVSRTLSNNCVEVFRVFGIEAARGSLLKEIRNVIEFDGSYVNYR 1173

Query: 537  HLSVLV 554
            HL++LV
Sbjct: 1174 HLALLV 1179

[107][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2B
          Length = 1892

 Score =  144 bits (363), Expect = 4e-33
 Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K           ++E+  D+    M+
Sbjct: 1236 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK----------MQEEEVVDK----MD 1281

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1282 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1336

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1337 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1396

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1397 RHLALL 1402

[108][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2A
          Length = 1896

 Score =  144 bits (363), Expect = 4e-33
 Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K           ++E+  D+    M+
Sbjct: 1236 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK----------MQEEEVVDK----MD 1281

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1282 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1336

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1337 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1396

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1397 RHLALL 1402

[109][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
           RepID=A9QMH1_9BILA
          Length = 616

 Score =  144 bits (363), Expect = 4e-33
 Identities = 86/186 (46%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +IH  FG DLHV+ ++DNA +LV  +R+     DK G           E+  D+    ME
Sbjct: 443 KIHKGFGDDLHVIYTDDNADKLVFHIRLTNSTADKEG-----------EEQIDK----ME 487

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D FL+ +ES +LS+LTL GI  I KV+M +    D K V  +  GSF   +EW+
Sbjct: 488 D-----DTFLKCIESNMLSDLTLQGIESISKVYMHKPQTDDKKRVELTQDGSFRMVSEWM 542

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+    VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 543 LETDGTALLKVLSEPHVDPVRTYSNDICEIFEVLGIEAVRKAIEREMNQVISFDGSYVNY 602

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 603 RHLALL 608

[110][TOP]
>UniRef100_Q7RJS0 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii
            RepID=Q7RJS0_PLAYO
          Length = 2312

 Score =  143 bits (361), Expect = 7e-33
 Identities = 69/124 (55%), Positives = 90/124 (72%)
 Frame = +3

Query: 180  MEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLE 359
            M  +ED ED FL+K+  + LS+L L G+  I KV+MR+++KI  DS  G F + + W+L+
Sbjct: 1745 MISKEDTEDTFLKKLMEECLSSLKLRGVENITKVYMREESKITYDSENGKFVRSSHWVLD 1804

Query: 360  TDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRH 539
            TDG N  ++     VDF +T+SNDIVE FEVLGIEAVR  LL E+RTVISFD +YVNYRH
Sbjct: 1805 TDGCNLESIFCAPSVDFKKTISNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRH 1864

Query: 540  LSVL 551
            LS+L
Sbjct: 1865 LSIL 1868

[111][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
            RepID=Q25151_9ANNE
          Length = 1337

 Score =  143 bits (361), Expect = 7e-33
 Identities = 84/186 (45%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I A FG DL+ + ++DNA +LV+RVR+ M N+D            + +QD +    +M 
Sbjct: 1141 KITAGFGDDLNCIFNDDNAEKLVLRVRL-MSNQDG-----------KQDQDTEEQIDKMP 1188

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
            D     D FL+ +ES +L+++TL GI  I KV+M+Q    D K +I    G F    +W+
Sbjct: 1189 D-----DTFLKHIESNMLTDMTLQGITSIAKVYMQQPTTDDKKRIIIDEKGEFKALQDWI 1243

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG     V+  E+VD  +TVSNDIVE FEVLGIEAVR ++  E+  VISFDG+YVNY
Sbjct: 1244 LETDGTALRRVLSVENVDPVKTVSNDIVEVFEVLGIEAVRKSIEREMNNVISFDGSYVNY 1303

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1304 RHLALL 1309

[112][TOP]
>UniRef100_A9QMQ1 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
           RepID=A9QMQ1_PRIPA
          Length = 318

 Score =  143 bits (361), Expect = 7e-33
 Identities = 85/186 (45%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +IH  FG DL+V+ ++DNA +LV R+R+   N+DK               D++    +ME
Sbjct: 148 KIHNGFGDDLNVIYTDDNADKLVFRLRIT--NQDKG--------------DSEEQVDKME 191

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +ES +LS+LTL GI  I KV+M +    D K  I +  GSF    EW+
Sbjct: 192 D-----DVFLRCIESNMLSDLTLQGIESISKVYMHKPTTDDKKRTIITPDGSFKAIAEWI 246

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+  ++VD  RT SNDI E FE+LGIEAVR  +  E   VISFDG+YVNY
Sbjct: 247 LETDGTALLRVLSEKNVDPARTXSNDICEIFEILGIEAVRKAIERERHQVISFDGSYVNY 306

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 307 RHLALL 312

[113][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QME1_9BILA
          Length = 628

 Score =  143 bits (361), Expect = 7e-33
 Identities = 86/185 (46%), Positives = 114/185 (61%), Gaps = 4/185 (2%)
 Frame = +3

Query: 9   IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 188
           IH  FG DL+V+ ++DNA +LV R+R+   N+D  G          DE+  D+    MED
Sbjct: 437 IHQGFGDDLNVIYTDDNADKLVFRLRIT--NQDDKGA---------DEEQIDK----MED 481

Query: 189 EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWLL 356
                D+FLR +ES +LS+LTL GI  I KV+M +    D K  I +  G F    +WLL
Sbjct: 482 -----DVFLRCIESNMLSDLTLQGITSICKVYMHKPQTDDKKRTIITPEGGFKSIADWLL 536

Query: 357 ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
           ETDG   + V+  + +D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVNYR
Sbjct: 537 ETDGTALLKVLSEQHIDPVRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNYR 596

Query: 537 HLSVL 551
           HL++L
Sbjct: 597 HLALL 601

[114][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
            RepID=UPI000186501C
          Length = 1956

 Score =  143 bits (360), Expect = 1e-32
 Identities = 84/186 (45%), Positives = 123/186 (66%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+ M N+D          +  DE+       EM 
Sbjct: 1230 KINAGFGDDLNCIFNDDNAEKLVLRIRI-MNNDDS---------KMMDEE-------EMV 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFM---RQDNKI-VIDSVTGSFTKENEWL 353
            D+ D +D+FLR +E+ +L+++TL GI  I KV+M   +QD K  +I +  G +    EW+
Sbjct: 1273 DKMD-DDVFLRCIEANMLTDMTLQGIEQIAKVYMHLPQQDTKKRIIITDEGEYKALQEWI 1331

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGVN + V+  ++VD  RT SNDIVE F++LGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 1332 LETDGVNLMKVLSEKNVDPVRTTSNDIVEIFQILGIEAVRKAIEKEMNHVISFDGSYVNY 1391

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1392 RHLALL 1397

[115][TOP]
>UniRef100_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cryptosporidium parvum
            Iowa II RepID=Q5CUJ2_CRYPV
          Length = 1902

 Score =  143 bits (360), Expect = 1e-32
 Identities = 76/174 (43%), Positives = 114/174 (65%)
 Frame = +3

Query: 30   DLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDL 209
            +L  + ++DN+ ELV+R+R+    E    I D+     E++  +  + + +E+ +     
Sbjct: 1277 ELDCIWTDDNSDELVLRLRIK-NIEPTNNIRDNIHSSEENDSISPSITSGVEEHK----- 1330

Query: 210  FLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVM 389
            FL K+ ++ LS +TL GI  I KV+M+++     DSV+    ++N+W+L+TDG N  AV+
Sbjct: 1331 FLEKLMTECLSQITLRGINNIKKVYMKEEQVSRYDSVSQKMVRDNQWVLDTDGCNLEAVL 1390

Query: 390  GHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
             H  +D TRT+SNDI E F VLGIEAVR  LL E+RTVISFDG+YVNYRHL++L
Sbjct: 1391 CHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYRHLALL 1444

[116][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
            RepID=Q23699_CRAGI
          Length = 1340

 Score =  143 bits (360), Expect = 1e-32
 Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I A FG DL+ + ++DNA +LV+R+R+   +E K              Q+ + +  +ME
Sbjct: 1145 KITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDESKM-------------QNEEEIVDKME 1191

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ LLS++TL GI  I KV+M     +D K +  +  G F    EW+
Sbjct: 1192 D-----DVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKKRISITEEGEFKAVAEWI 1246

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG   + V+   DVD  RT +NDIVE F +LGIEAVR ++  E+  VISFDG+YVNY
Sbjct: 1247 LETDGTALMKVLSQRDVDPIRTTTNDIVEVFSILGIEAVRKSIEKEMNHVISFDGSYVNY 1306

Query: 534  RHLSVL 551
            RHLS+L
Sbjct: 1307 RHLSLL 1312

[117][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
            RepID=C3ZES3_BRAFL
          Length = 1934

 Score =  143 bits (360), Expect = 1e-32
 Identities = 84/186 (45%), Positives = 123/186 (66%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+ M N+D          +  DE+       EM 
Sbjct: 1230 KINAGFGDDLNCIFNDDNAEKLVLRIRI-MNNDDS---------KMMDEE-------EMV 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFM---RQDNKI-VIDSVTGSFTKENEWL 353
            D+ D +D+FLR +E+ +L+++TL GI  I KV+M   +QD K  +I +  G +    EW+
Sbjct: 1273 DKMD-DDVFLRCIEANMLTDMTLQGIEQIAKVYMHLPQQDTKKRIIITDEGEYKALQEWI 1331

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGVN + V+  ++VD  RT SNDIVE F++LGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 1332 LETDGVNLMKVLSEKNVDPVRTTSNDIVEIFQILGIEAVRKAIEKEMNHVISFDGSYVNY 1391

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1392 RHLALL 1397

[118][TOP]
>UniRef100_Q5CH45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
            RepID=Q5CH45_CRYHO
          Length = 1895

 Score =  142 bits (359), Expect = 1e-32
 Identities = 75/174 (43%), Positives = 114/174 (65%)
 Frame = +3

Query: 30   DLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDL 209
            +L  + ++DN+ ELV+R+R+    E    I D+     E++  +  + + +E+ +     
Sbjct: 1270 ELDCIWTDDNSDELVLRLRIK-NIEPTNNICDNIHSSEENDSISPSITSGVEEHK----- 1323

Query: 210  FLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVM 389
            FL K+ ++ LS +TL GI  I KV+M+++     DS++    ++N+W+L+TDG N  AV+
Sbjct: 1324 FLEKLMTECLSQITLRGINNIKKVYMKEEQVSRYDSISQKMVRDNQWVLDTDGCNLEAVL 1383

Query: 390  GHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
             H  +D TRT+SNDI E F VLGIEAVR  LL E+RTVISFDG+YVNYRHL++L
Sbjct: 1384 CHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYRHLALL 1437

[119][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=A9QMG6_9BILA
          Length = 633

 Score =  142 bits (359), Expect = 1e-32
 Identities = 83/187 (44%), Positives = 108/187 (57%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RI   FG DLH + ++DNA  LV R+R+  EN+                 D +    +M
Sbjct: 442 SRITQGFGDDLHTIYTDDNADSLVFRIRIRSENKG----------------DTEETIEKM 485

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR VE  +L+ LTL GI  I KV+M +    D K  + +  G F    EW
Sbjct: 486 ED-----DMFLRAVEQNMLAELTLQGIEQISKVYMHKPTTDDKKRTVITPEGDFRSIAEW 540

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG + + V+   +VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 541 LLETDGTSLLDVLSQPNVDPVRTYSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVN 600

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 601 YRHLALL 607

[120][TOP]
>UniRef100_A5K7P4 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
            RepID=A5K7P4_PLAVI
          Length = 2379

 Score =  142 bits (359), Expect = 1e-32
 Identities = 70/121 (57%), Positives = 87/121 (71%)
 Frame = +3

Query: 189  EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDG 368
            +ED ED FL+K+  Q LS L L GI  I KV+MR+++KI  DS  G F + + W+L+TDG
Sbjct: 1767 KEDTEDTFLKKLMEQCLSTLKLRGIENITKVYMREESKITYDSTNGKFVRSSHWVLDTDG 1826

Query: 369  VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSV 548
             N   +     VD+ +TVSNDIVE FEVLGIEAVR  LL E+RTVISFD +YVNYRHLS+
Sbjct: 1827 CNLEHIFCASHVDYKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1886

Query: 549  L 551
            L
Sbjct: 1887 L 1887

[121][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 18 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B27
          Length = 1831

 Score =  142 bits (358), Expect = 2e-32
 Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K                      E+ 
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1273

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D+ D +D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1274 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1332

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1333 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1392

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1393 RHLALL 1398

[122][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 14 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B23
          Length = 1653

 Score =  142 bits (358), Expect = 2e-32
 Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K                      E+ 
Sbjct: 1207 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1246

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D+ D +D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1247 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1305

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1306 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1365

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1366 RHLALL 1371

[123][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 13 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B22
          Length = 1722

 Score =  142 bits (358), Expect = 2e-32
 Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K                      E+ 
Sbjct: 1207 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1246

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D+ D +D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1247 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1305

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1306 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1365

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1366 RHLALL 1371

[124][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 10 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1F
          Length = 1840

 Score =  142 bits (358), Expect = 2e-32
 Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K                      E+ 
Sbjct: 1230 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1269

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D+ D +D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1270 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1328

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1329 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1388

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1389 RHLALL 1394

[125][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 9 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1E
          Length = 1851

 Score =  142 bits (358), Expect = 2e-32
 Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K                      E+ 
Sbjct: 1230 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1269

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D+ D +D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1270 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1328

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1329 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1388

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1389 RHLALL 1394

[126][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 8 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1C
          Length = 1719

 Score =  142 bits (358), Expect = 2e-32
 Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K                      E+ 
Sbjct: 1228 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1267

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D+ D +D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1268 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1326

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1327 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1386

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1387 RHLALL 1392

[127][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 7 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1B
          Length = 1858

 Score =  142 bits (358), Expect = 2e-32
 Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K                      E+ 
Sbjct: 1228 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1267

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D+ D +D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1268 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1326

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1327 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1386

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1387 RHLALL 1392

[128][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1A
          Length = 1767

 Score =  142 bits (358), Expect = 2e-32
 Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K                      E+ 
Sbjct: 1222 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1261

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D+ D +D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1262 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1320

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1321 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1380

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1381 RHLALL 1386

[129][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 5 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B19
          Length = 1693

 Score =  142 bits (358), Expect = 2e-32
 Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K                      E+ 
Sbjct: 1220 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKM--------------------QEVV 1259

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D+ D +D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1260 DKMD-DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1318

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1319 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1378

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1379 RHLALL 1384

[130][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B0A92
          Length = 1714

 Score =  142 bits (358), Expect = 2e-32
 Identities = 84/186 (45%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A  G DL+ + ++DNA +LV+R+R+   +E K           EDE+  D+    M+
Sbjct: 1211 KINAGLGDDLNCIFNDDNAEQLVLRIRIMNSDEYKFQ---------EDEEVVDK----MD 1257

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1258 D-----DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWI 1312

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNY
Sbjct: 1313 LETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNY 1372

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1373 RHLALL 1378

[131][TOP]
>UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis
           longespiculosa RepID=A9QMG5_9BILA
          Length = 623

 Score =  142 bits (358), Expect = 2e-32
 Identities = 81/186 (43%), Positives = 107/186 (57%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           RI   FG DL+V+ ++DNA  LV R+R+  ++ DK    +    + ED            
Sbjct: 443 RIQQAFGEDLNVIYTDDNADSLVFRIRITSQDNDKVDTEEEQVDKMED------------ 490

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
                 D FLR +E  +LS+LTL GI  I KV+M +    D K ++ +  G F    EWL
Sbjct: 491 ------DAFLRALEQNMLSDLTLQGIEQITKVYMHKPNTDDKKRIVVTPEGDFKAIPEWL 544

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+   +VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 545 LETDGTALLQVLSQANVDPVRTTSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNY 604

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 605 RHLALL 610

[132][TOP]
>UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
           RepID=A9QMD9_9BILA
          Length = 595

 Score =  142 bits (358), Expect = 2e-32
 Identities = 83/187 (44%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG D++V+ ++DNA +LV R+R+   +E  A           +E+  D+    M
Sbjct: 402 DKIHQGFGDDINVIYTDDNAEKLVFRLRITSHDEKSA-----------EEEQIDK----M 446

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E  +LS+LTL GI  I KV+M +    D K ++ S  G F    EW
Sbjct: 447 ED-----DVFLRCLEGNMLSDLTLQGITSIAKVYMHKPTTDDKKRIVISPEGGFKAIPEW 501

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+    +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 502 LLETDGTALLRVLSERHIDPRRTSSNDICEIFEVLGIEAVRKAIQREMHNVISFDGSYVN 561

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 562 YRHLALL 568

[133][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
            RepID=A1YIA7_ISSOR
          Length = 1647

 Score =  142 bits (358), Expect = 2e-32
 Identities = 82/183 (44%), Positives = 110/183 (60%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ SEDNA +LVIR R+  E +                       A  E
Sbjct: 1139 KIMENFGDDLFVIWSEDNADKLVIRCRIVREEK-----------------------ALDE 1175

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            +EED ED  L+ +E+Q+L ++TL G+ GI +VFM + +K  I +  G F K+ EW+LETD
Sbjct: 1176 EEEDTEDGLLKALEAQMLESITLRGVSGISRVFMMKYDKTYI-AEDGDFAKKQEWVLETD 1234

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            G+N   V+  E +D TRT SN  VE   V GIEA R+ L  EI  VI+FDG+YVNYRHL+
Sbjct: 1235 GINLADVITVEGIDTTRTYSNSFVEILFVFGIEAARSALYKEILNVIAFDGSYVNYRHLA 1294

Query: 546  VLV 554
            +LV
Sbjct: 1295 LLV 1297

[134][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           SB341 RepID=Q6E225_9PELO
          Length = 622

 Score =  142 bits (357), Expect = 2e-32
 Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH+ FG DLHV+ ++DNA  LV R+R+A   +DK+  SD+       E+  D+    M
Sbjct: 442 DKIHSGFGNDLHVIYNDDNADHLVFRLRIA--GDDKS--SDA------QEEQVDK----M 487

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D FLR +E+ +LS+L+L GIP I K +M +    D K +I +  G F    EW
Sbjct: 488 ED-----DXFLRCIEANMLSDLSLQGIPAILKGYMYKPTTDDKKRIIITPEGGFKAIPEW 542

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 543 ILETDGTALLRVLSERHIDPVRTSSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVN 602

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 603 YRHLALL 609

[135][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
            RepID=B7PJA3_IXOSC
          Length = 1937

 Score =  142 bits (357), Expect = 2e-32
 Identities = 85/186 (45%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+ M N       D +K + E+EQ       +ME
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRI-MNN-------DGSKYQDEEEQ-----VDKME 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M      + K ++ + TG F    EWL
Sbjct: 1281 D-----DVFLRCIEANMLSDMTLQGIEAITKVYMHLPTTDNKKRIVLTETGEFKAIAEWL 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F VLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 1336 LETDGTSLMRVLSERDVDPVRTYSNDICEIFAVLGIEAVRKAVEKEMNHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[136][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
            RepID=A7S8F9_NEMVE
          Length = 1929

 Score =  141 bits (356), Expect = 3e-32
 Identities = 81/186 (43%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M N+D          + +D++D D+    M+
Sbjct: 1230 KINLGFGDDLNCIFNDDNAEKLVLRIRI-MNNDDG---------KMQDDEDVDK----MD 1275

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +L+++TL GI  I KV+M        K ++ +  G F    EWL
Sbjct: 1276 D-----DVFLRCIEANMLTDMTLQGIESISKVYMNLPHEDKKKRIVVTEQGEFKAIQEWL 1330

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGV+ + V+   DVD  RT SNDI E F VLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 1331 LETDGVSLMRVLSERDVDPVRTTSNDICEIFSVLGIEAVRKAVEREMDHVISFDGSYVNY 1390

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1391 RHLALL 1396

[137][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score =  141 bits (356), Expect = 3e-32
 Identities = 79/183 (43%), Positives = 109/183 (59%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I + +G DL VM SEDNA +L+IR RV  + +             E++ DA+       
Sbjct: 1219 KISSSYGEDLFVMWSEDNADKLIIRCRVVRDPKT-----------LEEDVDAE------- 1260

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
                 ED  L+++E  +L +++L GI GID+VFM +    V D VTG +  + EW+LETD
Sbjct: 1261 -----EDQMLKRIEGHMLDSISLRGIEGIDRVFMMEHKMSVPDEVTGDYKTKMEWVLETD 1315

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            G+N   VM  + VD  RT SN  VE   VLGIEA R+ L  EI  VI+FDG+YVNYRH++
Sbjct: 1316 GINLAEVMAVDGVDPYRTYSNSFVEVLSVLGIEATRSALYREILNVIAFDGSYVNYRHMA 1375

Query: 546  VLV 554
            +LV
Sbjct: 1376 LLV 1378

[138][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score =  141 bits (355), Expect = 4e-32
 Identities = 80/186 (43%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+    +D   +        EDE+  D+    ME
Sbjct: 1234 KINQGFGDDLNCIYNDDNAEKLVLRIRIMGSGDDSKNM--------EDEEQLDK----ME 1281

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +L+++TL GI  I KV+M     +  K VI +  G F    EW+
Sbjct: 1282 D-----DVFLRCIEANMLTDMTLQGIESIAKVYMHLPSEESKKRVIFNAEGEFKHLQEWI 1336

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG   + V+  +D+D  RT SNDI E F +LGIEAVR ++  E+  VISFDG+YVNY
Sbjct: 1337 LETDGNGLMKVLSQKDIDPVRTTSNDICEIFSILGIEAVRKSIEKEMDHVISFDGSYVNY 1396

Query: 534  RHLSVL 551
            RHLS+L
Sbjct: 1397 RHLSLL 1402

[139][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score =  141 bits (355), Expect = 4e-32
 Identities = 80/186 (43%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+    +D   +        EDE+  D+    ME
Sbjct: 1235 KINQGFGDDLNCIYNDDNAEKLVLRIRIMGSGDDSKNM--------EDEEQLDK----ME 1282

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +L+++TL GI  I KV+M     +  K VI +  G F    EW+
Sbjct: 1283 D-----DVFLRCIEANMLTDMTLQGIESIAKVYMHLPSEESKKRVIFNAEGEFKHLQEWI 1337

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG   + V+  +D+D  RT SNDI E F +LGIEAVR ++  E+  VISFDG+YVNY
Sbjct: 1338 LETDGNGLMKVLSQKDIDPVRTTSNDICEIFSILGIEAVRKSIEKEMDHVISFDGSYVNY 1397

Query: 534  RHLSVL 551
            RHLS+L
Sbjct: 1398 RHLSLL 1403

[140][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           plicata RepID=Q6E226_9PELO
          Length = 636

 Score =  141 bits (355), Expect = 4e-32
 Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           RIHA FG D+  + ++DNA +LV R+R+A +++   G           E+  D+    ME
Sbjct: 443 RIHAGFGNDVKTIYTDDNADKLVFRLRIAGDDKMAEG----------QEEQVDK----ME 488

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +ES +L++LTL GIP I KV++ +    D K  I +  G F    EW+
Sbjct: 489 D-----DVFLRCIESNMLADLTLQGIPAIAKVYLNKPQSDDKKRTIITPEGGFKSIAEWI 543

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG     V+    +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 544 LETDGTALQRVLSEPQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMHNVISFDGSYVNY 603

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 604 RHLALL 609

[141][TOP]
>UniRef100_A9QMS1 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides regina
           RepID=A9QMS1_9BILA
          Length = 426

 Score =  141 bits (355), Expect = 4e-32
 Identities = 86/187 (45%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RIH  FG DL+V+ +   A +LV R+R+  ++EDK           E E+  D+    M
Sbjct: 234 DRIHQGFGDDLNVIYTXXXADKLVFRLRITNQSEDKG----------ETEEQVDK----M 279

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +ES +LS+LTL GI  I KV+M +    D K ++ +  G F    EW
Sbjct: 280 ED-----DVFLRCIESNMLSDLTLQGIEAIAKVYMHKPTTDDKKRMVITPEGGFKAIPEW 334

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+    VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 335 LLETDGTALLRVLAESAVDPIRTSSNDICEIFEVLGIEAVRKGIEREMHQVISFDGSYVN 394

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 395 YRHLALL 401

[142][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
           RepID=A9QMR7_9BILA
          Length = 614

 Score =  141 bits (355), Expect = 4e-32
 Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 4/185 (2%)
 Frame = +3

Query: 9   IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 188
           I   FG DL+++ ++DNA +LVIR+R+A                     DA++ A E + 
Sbjct: 430 IRRGFGDDLNIVYTDDNAEKLVIRIRIA-------------------NSDAEKGATEEQV 470

Query: 189 EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWLL 356
           ++  +D FLR +E+ +LS LTL GI  I KV+M +    D K ++ +  G F    EWLL
Sbjct: 471 DKMEDDGFLRCIEANMLSELTLQGIESITKVYMHKPTTDDKKRMVITPEGGFKAVAEWLL 530

Query: 357 ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
           ETDG   + V+   DVD  RT SNDI E F VLGIEAVR  +  E+  VISFDG+YVNYR
Sbjct: 531 ETDGTALLKVLSDRDVDPVRTTSNDICEIFAVLGIEAVRKAIEREMHQVISFDGSYVNYR 590

Query: 537 HLSVL 551
           HL++L
Sbjct: 591 HLALL 595

[143][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
            RepID=B3RM26_TRIAD
          Length = 1784

 Score =  140 bits (354), Expect = 5e-32
 Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +L++R+R+ + N++K G+            D D     M+
Sbjct: 1213 KINAGFGEDLNCIFNDDNAEKLILRIRI-VNNDNKEGV------------DRDEQWDRMD 1259

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR---QDNKI-VIDSVTGSFTKENEWL 353
            D     D+FLR +ES +LS++TL GI  I KV+M    QD+K  +I +  G +    EW+
Sbjct: 1260 D-----DVFLRCIESNMLSDMTLQGIEQISKVYMHLPLQDSKKRMIINEEGEYKAIQEWI 1314

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDGVN   V+  +DVD  ++ SNDIVE F VLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 1315 LETDGVNLQKVLSVKDVDAVKSTSNDIVEIFSVLGIEAVRKAVEKEMNHVISFDGSYVNY 1374

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1375 RHLALL 1380

[144][TOP]
>UniRef100_B3L428 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
            RepID=B3L428_PLAKH
          Length = 2353

 Score =  140 bits (354), Expect = 5e-32
 Identities = 69/121 (57%), Positives = 87/121 (71%)
 Frame = +3

Query: 189  EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDG 368
            +ED ED FL+K+  Q LS L L GI  I KV+MR+++KI  DS  G F + + W+L+TDG
Sbjct: 1735 KEDTEDTFLKKLMEQCLSTLKLRGIENITKVYMREESKITYDSNNGKFVRSSHWVLDTDG 1794

Query: 369  VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSV 548
             N   +     VD+ +T+SNDIVE FEVLGIEAVR  LL E+RTVISFD +YVNYRHLS+
Sbjct: 1795 CNLEHIFCAPHVDYKKTISNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSI 1854

Query: 549  L 551
            L
Sbjct: 1855 L 1855

[145][TOP]
>UniRef100_A9UED6 RNA polymerase 2 largest subunit (Fragment) n=1 Tax=Diploscapter
           sp. JU359 RepID=A9UED6_9BILA
          Length = 374

 Score =  140 bits (354), Expect = 5e-32
 Identities = 83/187 (44%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  F  DL+V+ ++DNA +LV R+R+  ++E              +E+  D+    M
Sbjct: 193 DKIHEGFRDDLNVIYTDDNAEKLVFRLRITTQDEKNT-----------EEEQIDK----M 237

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D FLR +E+ +LS+LTL GI  I KV+M +    D K +I S  G F    EW
Sbjct: 238 ED-----DTFLRAIEASMLSDLTLQGISSIAKVYMHKPTTDDKKKIIISPEGGFKAIPEW 292

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG   + V+    +D  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 293 LLETDGTALLRVLSERHIDPKRTSSNDICEIFEVLGIEAVRKAIQREMHNVISFDGSYVN 352

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 353 YRHLALL 359

[146][TOP]
>UniRef100_A9QMQ8 RNA polymerase 2 (Fragment) n=1 Tax=Phasmarhabditis sp. EM434
           RepID=A9QMQ8_9BILA
          Length = 204

 Score =  140 bits (354), Expect = 5e-32
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +++  FG DL+V+ ++DNA +LV R+R++  ++ +A           +E+  D+    ME
Sbjct: 26  KVNQGFGDDLNVIYTDDNADKLVFRLRISATDDKQA-----------EEEQVDK----ME 70

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +E+ +LS+L L GIP I KV+M +    D K VI +  G F    EW+
Sbjct: 71  D-----DVFLRCIEANMLSDLALQGIPQISKVYMHKPTTDDKKRVIITPEGGFKAIAEWI 125

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+    +D  RT SNDI E FEVLGIEAVR ++  E+  VISFDG+YVNY
Sbjct: 126 LETDGTALLKVLSERHIDPIRTTSNDICEIFEVLGIEAVRKSIEREMNNVISFDGSYVNY 185

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 186 RHLALL 191

[147][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
            RepID=Q25203_9CAEN
          Length = 1343

 Score =  140 bits (353), Expect = 6e-32
 Identities = 82/186 (44%), Positives = 112/186 (60%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I A FG DL+ + ++DNA +LV+R+R+   ++ K              QD + V  +ME
Sbjct: 1148 KITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKM-------------QDEEEVVDKME 1194

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES LLS++TL GI  I KV+M      D K +  +  G F    EW+
Sbjct: 1195 D-----DVFLRCIESNLLSDMTLQGIEAIAKVYMHLPTTDDKKRIHITEEGEFKAVAEWI 1249

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT +NDIVE F  LGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 1250 LETDGSSLMKVLSERDVDPVRTYTNDIVEVFATLGIEAVRKAIEREMVHVISFDGSYVNY 1309

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1310 RHLALL 1315

[148][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BD271
          Length = 1749

 Score =  140 bits (352), Expect = 8e-32
 Identities = 79/183 (43%), Positives = 109/183 (59%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ S+D A +L+IR RV  +            P+  DE           
Sbjct: 1221 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1257

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            D +  ED  L+++ES +L +++L GIPGI +VFM Q +K+    +TG F +  EW+LETD
Sbjct: 1258 DADAEEDQILKRIESHMLESISLRGIPGITRVFMMQ-HKVNSPDITGEFKQSQEWVLETD 1316

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN   VM    VD +RT SN+ +E   VLGIEA R  L  EI  VI+FDG+YVNYRH++
Sbjct: 1317 GVNLADVMAVSGVDSSRTYSNNFIEVLSVLGIEATRTALFKEILNVIAFDGSYVNYRHMA 1376

Query: 546  VLV 554
            +LV
Sbjct: 1377 LLV 1379

[149][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
            RepID=Q9XZU9_DROSU
          Length = 1889

 Score =  140 bits (352), Expect = 8e-32
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[150][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
            RepID=Q9XZS2_DROMD
          Length = 1889

 Score =  140 bits (352), Expect = 8e-32
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[151][TOP]
>UniRef100_C4QEL8 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
            RepID=C4QEL8_SCHMA
          Length = 1785

 Score =  140 bits (352), Expect = 8e-32
 Identities = 86/187 (45%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            ++I   FG DL     +DN  +LV+R+R+   + +K            D +DAD  + +M
Sbjct: 1123 DKITRAFGNDLICHIPDDNL-KLVMRIRIMNSDLEK------------DFKDADTTSDKM 1169

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEW 350
            ED     D FLR +E+ LL+++TL GIP I KV+M     QD K V+    GSF    EW
Sbjct: 1170 ED-----DTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDKKRVVIKDDGSFDTVAEW 1224

Query: 351  LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
            +LETDG   + V+   DVD  RTVSNDIVE FE LGIEAVR  +  E+  VISFDG+YVN
Sbjct: 1225 MLETDGTCLMRVLAERDVDPVRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVN 1284

Query: 531  YRHLSVL 551
            YRHL++L
Sbjct: 1285 YRHLALL 1291

[152][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
            RepID=B5RSM9_DEBHA
          Length = 1749

 Score =  140 bits (352), Expect = 8e-32
 Identities = 79/183 (43%), Positives = 109/183 (59%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ S+D A +L+IR RV  +            P+  DE           
Sbjct: 1221 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1257

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            D +  ED  L+++ES +L +++L GIPGI +VFM Q +K+    +TG F +  EW+LETD
Sbjct: 1258 DADAEEDQILKRIESHMLESISLRGIPGITRVFMMQ-HKVNSPDITGEFKQSQEWVLETD 1316

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN   VM    VD +RT SN+ +E   VLGIEA R  L  EI  VI+FDG+YVNYRH++
Sbjct: 1317 GVNLADVMAVSGVDSSRTYSNNFIEVLSVLGIEATRTALFKEILNVIAFDGSYVNYRHMA 1376

Query: 546  VLV 554
            +LV
Sbjct: 1377 LLV 1379

[153][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
            pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
          Length = 1811

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1148 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1194

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1195 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1249

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1250 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1309

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1310 RHLALL 1315

[154][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
            RepID=Q9XZS1_DROGU
          Length = 1889

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[155][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
            pseudoobscura RepID=Q29IN2_DROPS
          Length = 1889

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[156][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila erecta RepID=Q1WKU4_DROER
          Length = 760

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 368 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 414

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 415 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 469

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 470 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 529

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 530 RHLALL 535

[157][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila orena RepID=Q1WKU3_DROOR
          Length = 750

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 368 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 414

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 415 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 469

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 470 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 529

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 530 RHLALL 535

[158][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila simulans RepID=Q1WKU2_DROSI
          Length = 746

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 368 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 414

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 415 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 469

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 470 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 529

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 530 RHLALL 535

[159][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
           Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
          Length = 766

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 368 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 414

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 415 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 469

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 470 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 529

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 530 RHLALL 535

[160][TOP]
>UniRef100_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
            RepID=B6AG69_9CRYT
          Length = 1927

 Score =  139 bits (351), Expect = 1e-31
 Identities = 77/187 (41%), Positives = 117/187 (62%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3    NRIHAHFGGD-LHVMASEDNAAELVIRVRVAMENEDKAGISDS---TKPRFEDEQDADRV 170
            ++I   F  D L  + ++DN+ ELV+R+R+       +G  D+   ++ + +D       
Sbjct: 1264 DKILMEFSNDELDCIWTDDNSDELVLRLRIKNLEPTNSGTQDTVMNSEFQIDDGHYQPPT 1323

Query: 171  AAEMEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEW 350
               +E+ +     FL K+ ++ LS +TL GI  I KV+M+++     D ++    ++N+W
Sbjct: 1324 PPVVEEHK-----FLEKLMTECLSQITLRGISNIKKVYMKEEQVTRYDILSQKIVRDNQW 1378

Query: 351  LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
            +L+TDG N  AV+ HE +D TRT+SNDI E F VLGIEAVR  LL E+RTVISFDG+YVN
Sbjct: 1379 VLDTDGCNLEAVLCHEAIDSTRTISNDITEVFSVLGIEAVRRALLKELRTVISFDGSYVN 1438

Query: 531  YRHLSVL 551
            YRHL++L
Sbjct: 1439 YRHLALL 1445

[161][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4PY98_DROYA
          Length = 1889

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[162][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4NDK9_DROWI
          Length = 1890

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[163][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
            RepID=B4MAN9_DROVI
          Length = 1889

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[164][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4L732_DROMO
          Length = 1889

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[165][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4JXA6_DROGR
          Length = 1889

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[166][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
            RepID=B4H2R8_DROPE
          Length = 1804

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[167][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NUC1_DROER
          Length = 1889

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[168][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MQ29_DROAN
          Length = 1889

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[169][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
            RepID=A9UNH9_DROME
          Length = 1887

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[170][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5ACI7_CANAL
          Length = 1728

 Score =  139 bits (351), Expect = 1e-31
 Identities = 80/183 (43%), Positives = 110/183 (60%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ S+D A +L+IR RV  +            P+  DE           
Sbjct: 1216 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1252

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            D +  ED  L+++E+ +L +++L GIPGI +VFM Q +K+     TG F +  EW+LETD
Sbjct: 1253 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVSHPDETGEFKQGKEWVLETD 1311

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN   VM    VD TRT SND +E   VLGIEA R++L  EI  VI+FDG+YVNYRH++
Sbjct: 1312 GVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMA 1371

Query: 546  VLV 554
            +LV
Sbjct: 1372 LLV 1374

[171][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YN85_CANAL
          Length = 1742

 Score =  139 bits (351), Expect = 1e-31
 Identities = 80/183 (43%), Positives = 110/183 (60%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ S+D A +L+IR RV  +            P+  DE           
Sbjct: 1216 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1252

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            D +  ED  L+++E+ +L +++L GIPGI +VFM Q +K+     TG F +  EW+LETD
Sbjct: 1253 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVSHPDETGEFKQGKEWVLETD 1311

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN   VM    VD TRT SND +E   VLGIEA R++L  EI  VI+FDG+YVNYRH++
Sbjct: 1312 GVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMA 1371

Query: 546  VLV 554
            +LV
Sbjct: 1372 LLV 1374

[172][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
            melanogaster RepID=RPB1_DROME
          Length = 1887

 Score =  139 bits (351), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[173][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
            RepID=Q17085_ARTSA
          Length = 1341

 Score =  139 bits (350), Expect = 1e-31
 Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I A FG DL+ + ++DNA +LV+R+R+   +E K G         E+++  D+    ME
Sbjct: 1146 KITAGFGEDLNCIFNDDNAEKLVLRIRIMNSDESKFG---------EEDEQIDK----ME 1192

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M      + K +I + TG F    EWL
Sbjct: 1193 D-----DMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDNKKRIIITDTGEFRAIAEWL 1247

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1248 LETDGTSLMKVLSERDVDPVRTYSNDICEIFTVLGIEAVRKSIEKEMNAVLQFYGLYVNY 1307

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1308 RHLALL 1313

[174][TOP]
>UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp.
           RepID=O01370_9BILA
          Length = 633

 Score =  139 bits (350), Expect = 1e-31
 Identities = 83/186 (44%), Positives = 110/186 (59%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           RI   FG  L+V+ ++DNA  LV R+R+  +++DK           + E+  DR    ME
Sbjct: 439 RIQQSFGETLNVIYTDDNADNLVFRIRIVADDQDKG----------DTEEQVDR----ME 484

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D FLR +E  +LS+LTL GI  I KV+M +    D K ++ +    F    EWL
Sbjct: 485 D-----DAFLRALEQNMLSDLTLQGIEQITKVYMHKPTTDDKKRIVITPEAGFKAIPEWL 539

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDG   + V+   +VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 540 LETDGTALLQVLSQPNVDPIRTTSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVNY 599

Query: 534 RHLSVL 551
           RHL++L
Sbjct: 600 RHLALL 605

[175][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48673
          Length = 1880

 Score =  139 bits (349), Expect = 2e-31
 Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K          F+DEQ       +ME
Sbjct: 1228 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK----------FQDEQ-----VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1273 D-----DVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQVANKKRIIITEEGEFKHIAEWI 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG   + V+   +VD  RT SNDI E F+VLGIEAVR ++  E+  VISFDG+YVNY
Sbjct: 1328 LETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAVRKSVETEMNHVISFDGSYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[176][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48672
          Length = 1913

 Score =  139 bits (349), Expect = 2e-31
 Identities = 81/186 (43%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K          F+DE++      +ME
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK----------FQDEEEQ---VDKME 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQVANKKRIIITEEGEFKHIAEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG   + V+   +VD  RT SNDI E F+VLGIEAVR ++  E+  VISFDG+YVNY
Sbjct: 1336 LETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAVRKSVETEMNHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[177][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48671
          Length = 1921

 Score =  139 bits (349), Expect = 2e-31
 Identities = 81/186 (43%), Positives = 118/186 (63%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +E+K          F+DE++      +ME
Sbjct: 1234 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENK----------FQDEEEQ---VDKME 1280

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+
Sbjct: 1281 D-----DVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQVANKKRIIITEEGEFKHIAEWI 1335

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG   + V+   +VD  RT SNDI E F+VLGIEAVR ++  E+  VISFDG+YVNY
Sbjct: 1336 LETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAVRKSVETEMNHVISFDGSYVNY 1395

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1396 RHLALL 1401

[178][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6JYP8_SCHJY
          Length = 1748

 Score =  139 bits (349), Expect = 2e-31
 Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 3/185 (1%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   F  DL  + SEDNA +L+IR R+  +++ KA                        
Sbjct: 1218 KIAESFERDLFTIWSEDNAEKLIIRCRIIRDDDKKA------------------------ 1253

Query: 186  DEEDA---EDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLL 356
            DE+D    ED+FL+ +E  +L +++L G+P I +V+M  ++KIV  +  G F +++EW+L
Sbjct: 1254 DEDDGLIEEDIFLKTIEGHMLESISLRGVPNITRVYM-MEHKIVHQNDDGVFVRDDEWVL 1312

Query: 357  ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
            ETDG+N    M  E VD +RT SN  VE  +VLGIEA R+ LL E+R VI FDG+YVNYR
Sbjct: 1313 ETDGINLAESMAVEGVDPSRTYSNSFVEVLQVLGIEATRSALLKELRNVIEFDGSYVNYR 1372

Query: 537  HLSVL 551
            HL++L
Sbjct: 1373 HLALL 1377

[179][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
          Length = 1752

 Score =  139 bits (349), Expect = 2e-31
 Identities = 76/182 (41%), Positives = 109/182 (59%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   F  DL  + SEDNA +L+IR R+  +++ KA                     E +
Sbjct: 1218 KIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKA---------------------EDD 1256

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            D    ED+FL+ +E  +L +++L G+P I +V+M  ++KIV     G+F + +EW+LETD
Sbjct: 1257 DNMIEEDVFLKTIEGHMLESISLRGVPNITRVYM-MEHKIVRQIEDGTFERADEWVLETD 1315

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            G+N    M  E VD TRT SN  VE  ++LGIEA R+ LL E+R VI FDG+YVNYRHL+
Sbjct: 1316 GINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLA 1375

Query: 546  VL 551
            +L
Sbjct: 1376 LL 1377

[180][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
            RepID=UPI0000F24379
          Length = 1739

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/183 (42%), Positives = 110/183 (60%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ S+D A +L+IR RV  + +             ++E DA+       
Sbjct: 1216 KISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKS-----------LDEEADAE------- 1257

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
                 ED  L+++E+ +L +++L GIPGI +VFM Q +K+     TG F +  EW+LETD
Sbjct: 1258 -----EDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVNTPDATGEFKQGKEWVLETD 1311

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN   VM    VD +RT SN+ +E   VLGIEA RA L  EI  V+SFDG+YVNYRH++
Sbjct: 1312 GVNLADVMAVPGVDSSRTYSNNFIEILSVLGIEATRAALFKEILNVLSFDGSYVNYRHMA 1371

Query: 546  VLV 554
            +LV
Sbjct: 1372 LLV 1374

[181][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=O01375_9BILA
          Length = 631

 Score =  138 bits (348), Expect = 2e-31
 Identities = 83/187 (44%), Positives = 106/187 (56%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           +RI   FG DLH + ++DNA  LV R+R+  EN+                 D +    +M
Sbjct: 438 SRITQGFGYDLHTIYTDDNADSLVFRIRIRSENKG----------------DTEETIEKM 481

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR VE   L  LTL GI  I KV+M +    D K  + +  G F    EW
Sbjct: 482 ED-----DMFLRAVEQICLLELTLQGIEQISKVYMHKPTTDDKKRTVITPEGDFRSIAEW 536

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           LLETDG + + V+   +VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 537 LLETDGTSLLDVLSQPNVDPVRTYSNDICEIFEVLGIEAVRKAIEREMHQVISFDGSYVN 596

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 597 YRHLALL 603

[182][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5E6J4_LODEL
          Length = 1745

 Score =  138 bits (348), Expect = 2e-31
 Identities = 79/183 (43%), Positives = 108/183 (59%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ S+D A +L+IR RV  +            P+  DE           
Sbjct: 1210 KISQNFGDDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1246

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            D +  ED  L+++E+ +L +++L GIPGI +VFM Q +K+     TG F +  EW+LETD
Sbjct: 1247 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVSKPDATGEFKQGKEWVLETD 1305

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN   VM    VD  RT SND +E   VLGIEA R+ L  EI  VI+FDG+YVNYRH++
Sbjct: 1306 GVNLADVMAVPGVDSARTYSNDFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMA 1365

Query: 546  VLV 554
            +LV
Sbjct: 1366 LLV 1368

[183][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3GID7_PICST
          Length = 1739

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/183 (42%), Positives = 110/183 (60%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ S+D A +L+IR RV  + +             ++E DA+       
Sbjct: 1216 KISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKS-----------LDEEADAE------- 1257

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
                 ED  L+++E+ +L +++L GIPGI +VFM Q +K+     TG F +  EW+LETD
Sbjct: 1258 -----EDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVNTPDATGEFKQGKEWVLETD 1311

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN   VM    VD +RT SN+ +E   VLGIEA RA L  EI  V+SFDG+YVNYRH++
Sbjct: 1312 GVNLADVMAVPGVDSSRTYSNNFIEILSVLGIEATRAALFKEILNVLSFDGSYVNYRHMA 1371

Query: 546  VLV 554
            +LV
Sbjct: 1372 LLV 1374

[184][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
            RepID=B0XAQ9_CULQU
          Length = 1874

 Score =  138 bits (347), Expect = 3e-31
 Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+ M NED        K +  DE++ D+    ME
Sbjct: 1209 KINAGFGDDLNCIFNDDNADKLVLRIRI-MNNEDN-------KFQDNDEENMDK----ME 1256

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        + ++ +  G F    EWL
Sbjct: 1257 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKRRIVITPEGEFKAIGEWL 1311

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1312 LETDGTSMMKVLSERDVDPVRTASNDICEIFQVLGIEAVRKSVEKEMNNVLQFYGLYVNY 1371

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1372 RHLALL 1377

[185][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179338A
          Length = 1862

 Score =  137 bits (346), Expect = 4e-31
 Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +L++R+R+    + K    D       DE  AD+    ME
Sbjct: 1227 KINAGFGDDLNCIFNDDNADKLILRIRIMNGEDGKMNGGD-------DEDTADK----ME 1275

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K +I + TG F    +WL
Sbjct: 1276 D-----DMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDAKKRIIITDTGEFKAIADWL 1330

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F VLGIEAVR ++  E+ TV++F G YVNY
Sbjct: 1331 LETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLNFYGLYVNY 1390

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1391 RHLALL 1396

[186][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
          Length = 1422

 Score =  137 bits (346), Expect = 4e-31
 Identities = 78/186 (41%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   +++K          F+D ++      +ME
Sbjct: 1226 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK----------FQDSEE--ETVDKME 1273

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1274 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGEFKAIAEWL 1328

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1329 LETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1388

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1389 RHLALL 1394

[187][TOP]
>UniRef100_C6F1F7 DNA-directed RNA polymerase n=1 Tax=Plasmodium gallinaceum
            RepID=C6F1F7_PLAGA
          Length = 2200

 Score =  137 bits (346), Expect = 4e-31
 Identities = 75/160 (46%), Positives = 101/160 (63%), Gaps = 8/160 (5%)
 Frame = +3

Query: 96   ENEDKAGISD-----STKPRFEDE---QDADRVAAEMEDEEDAEDLFLRKVESQLLSNLT 251
            EN  + G  D     ST    +D+   ++  +    +  +ED ED FL+K+  Q LS L 
Sbjct: 1619 ENMKELGSQDDMYNKSTSKNMDDDATLKNRSKTNNPLLSKEDTEDTFLKKLMEQCLSTLK 1678

Query: 252  LSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSND 431
            L GI  I KV+MR++ KI  D+ +G F + + W+L+TDG N   +     VD+ +T+SND
Sbjct: 1679 LRGIENITKVYMREEAKINYDTESGKFIRSSHWVLDTDGCNLENIFCAPLVDYKKTISND 1738

Query: 432  IVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
            IVE FEVLGIEAVR  LL E+RTVISFD +YVNYRHLS+L
Sbjct: 1739 IVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSIL 1778

[188][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4IK28_DROSE
          Length = 1887

 Score =  137 bits (346), Expect = 4e-31
 Identities = 80/186 (43%), Positives = 115/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  FG DL+ + ++DNA +LV+R+R+ M NE+          +F+DE +A     +ME
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRI-MNNEEN---------KFQDEDEA---VDKME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ +  G F    EWL
Sbjct: 1273 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITENGEFKAIGEWL 1327

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F+VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1387

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1388 RHLALL 1393

[189][TOP]
>UniRef100_A9QMH2 RNA polymerase 2 (Fragment) n=1 Tax=Brevibucca saprophaga
           RepID=A9QMH2_9BILA
          Length = 386

 Score =  137 bits (346), Expect = 4e-31
 Identities = 81/187 (43%), Positives = 113/187 (60%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++I+  FG DL+V+ ++DNA  LV R+R+   + DK            +E+  D+    M
Sbjct: 192 DKINKGFGDDLNVIYTDDNADTLVFRIRINASDGDKG-----------EEEQVDK----M 236

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +LS+LTL GI  I KV+M +    D K    +  G+F    EW
Sbjct: 237 ED-----DVFLRCIEANMLSDLTLQGIETIAKVYMHKPNTDDKKRTFITTEGAFKSVAEW 291

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    VD  RT SNDI E F+VLGIEAVR ++  E+  VISFDG+YVN
Sbjct: 292 ILETDGTALLKVLSERHVDPVRTTSNDICEIFDVLGIEAVRKSIEREMDNVISFDGSYVN 351

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 352 YRHLALL 358

[190][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score =  137 bits (346), Expect = 4e-31
 Identities = 78/183 (42%), Positives = 111/183 (60%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I + +   LHVM S+DNA  L + +R+   N+D+A                  +   ++
Sbjct: 1162 KISSQYQDVLHVMHSDDNAPSLALVIRI---NQDEA------------------MQESLK 1200

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            +    ED+ LR VESQL+++L L GI  I +V++ +    V ++ TG+  +  E +LETD
Sbjct: 1201 ESAQTEDVILRDVESQLMASLALGGITNIRRVYISEQKVAVQNTATGAIEQAQEHILETD 1260

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            G+N   VM  E+VDFTRT SN  +E + VLGIEA RA LL EIR VI FDG+YVNYRHL+
Sbjct: 1261 GINLREVMAVEEVDFTRTYSNAPLEIYAVLGIEAGRAALLKEIRKVIEFDGSYVNYRHLA 1320

Query: 546  VLV 554
            +LV
Sbjct: 1321 LLV 1323

[191][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9WN64_CANDC
          Length = 1735

 Score =  137 bits (346), Expect = 4e-31
 Identities = 79/183 (43%), Positives = 109/183 (59%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ S+D A +L+IR RV  +            P+  DE           
Sbjct: 1216 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1252

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            D +  ED  L+++E+ +L +++L GIPGI +VFM Q +K+     TG F +  EW+LETD
Sbjct: 1253 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQ-HKVSHPDETGEFKQGKEWVLETD 1311

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN   VM    VD  RT SND +E   VLGIEA R++L  EI  VI+FDG+YVNYRH++
Sbjct: 1312 GVNLADVMAVPGVDSARTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMA 1371

Query: 546  VLV 554
            +LV
Sbjct: 1372 LLV 1374

[192][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
            RepID=UPI000186D846
          Length = 1885

 Score =  137 bits (345), Expect = 5e-31
 Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+ M N++K  ++D      E+ QD      +ME
Sbjct: 1219 KINAGFGDDLNCIFNDDNAEKLVLRLRI-MNNDEK--VTDE-----EENQD------KME 1264

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1265 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQNDSKKRIVITETGEFKAIAEWL 1319

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1320 LETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYVNY 1379

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1380 RHLALL 1385

[193][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
            RepID=UPI0000D5670C
          Length = 2007

 Score =  137 bits (345), Expect = 5e-31
 Identities = 78/186 (41%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   ++ K G              AD    +M+
Sbjct: 1230 KINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDGKFG------------DGADEDVDKMD 1277

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ + TG F    EWL
Sbjct: 1278 D-----DMFLRCIEANMLSDMTLQGIEAISKVYMHLPQNDSKKRIVITETGEFKAIAEWL 1332

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1333 LETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLYVNY 1392

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1393 RHLALL 1398

[194][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
           redivivus RepID=A9QMH0_PANRE
          Length = 636

 Score =  137 bits (345), Expect = 5e-31
 Identities = 84/187 (44%), Positives = 108/187 (57%), Gaps = 4/187 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++I   FG DLHV+ ++DNA +LV  +R+     DK               D++    +M
Sbjct: 443 DKITKGFGDDLHVIYTDDNAEKLVFHLRLQNSPGDK---------------DSEEQIDKM 487

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D FLR VE  LLS+LTL GI  I KV+M +    D K V+ +  G F    EW
Sbjct: 488 ED-----DAFLRCVEQNLLSDLTLQGIESISKVYMHKPSTDDKKRVVMTPEGDFQMIAEW 542

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
           +LETDG   + V+    VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+YVN
Sbjct: 543 ILETDGTALLKVLSEPMVDGIRTYSNDICEVFEVLGIEAVRKAIEREMNHVISFDGSYVN 602

Query: 531 YRHLSVL 551
           YRHL++L
Sbjct: 603 YRHLALL 609

[195][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179348F
          Length = 1862

 Score =  137 bits (344), Expect = 7e-31
 Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +L++R+R+    + K    D       DE   D+    ME
Sbjct: 1227 KINAGFGDDLNCIFNDDNADKLILRIRIMNGEDGKMNGGD-------DEDTVDK----ME 1275

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K +I + TG F    +WL
Sbjct: 1276 D-----DMFLRCIEANMLSDMTLQGIDSIGKVYMHLPQTDSKKRIIITDTGEFKAIADWL 1330

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F VLGIEAVR ++  E+ TV+ F G YVNY
Sbjct: 1331 LETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGLYVNY 1390

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1391 RHLALL 1396

[196][TOP]
>UniRef100_B9PMD7 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
            RepID=B9PMD7_TOXGO
          Length = 1892

 Score =  136 bits (343), Expect = 9e-31
 Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 1/183 (0%)
 Frame = +3

Query: 6    RIHAHFGGD-LHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            +I+A F  + L  + ++DN+ +LV+R+R+  +            P   +++D D      
Sbjct: 1243 KIYAEFPNEELDCIWTDDNSDDLVLRIRLKQQ------------PGEGEDEDKDE----- 1285

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
            +D  +A D FL+K+  Q L+ +TL GI  I KV+MR++ + + ++  G F + N W+L+T
Sbjct: 1286 DDVAEAGDRFLQKLMVQCLAGITLRGITNISKVYMREEARTIYNNQLGKFERTNNWVLDT 1345

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DG N   V+    VD TRT SND+ E F VLGIEAVR  LL E+R VISFDG+YVNYRHL
Sbjct: 1346 DGCNLEDVLPIPMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHL 1405

Query: 543  SVL 551
            ++L
Sbjct: 1406 AIL 1408

[197][TOP]
>UniRef100_B6KEC6 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii ME49
            RepID=B6KEC6_TOXGO
          Length = 1892

 Score =  136 bits (343), Expect = 9e-31
 Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 1/183 (0%)
 Frame = +3

Query: 6    RIHAHFGGD-LHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            +I+A F  + L  + ++DN+ +LV+R+R+  +            P   +++D D      
Sbjct: 1243 KIYAEFPNEELDCIWTDDNSDDLVLRIRLKQQ------------PGEGEDEDKDE----- 1285

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
            +D  +A D FL+K+  Q L+ +TL GI  I KV+MR++ + + ++  G F + N W+L+T
Sbjct: 1286 DDVAEAGDRFLQKLMVQCLAGITLRGITNISKVYMREEARTIYNNQLGKFERTNNWVLDT 1345

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DG N   V+    VD TRT SND+ E F VLGIEAVR  LL E+R VISFDG+YVNYRHL
Sbjct: 1346 DGCNLEDVLPIPMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHL 1405

Query: 543  SVL 551
            ++L
Sbjct: 1406 AIL 1408

[198][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
            RepID=C4Y5N4_CLAL4
          Length = 1402

 Score =  136 bits (343), Expect = 9e-31
 Identities = 77/183 (42%), Positives = 112/183 (61%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ S+D A +L+IR RV  +            P+ E+E D +       
Sbjct: 1175 KISQNFGEDLFVIWSDDTADKLIIRCRVIRD------------PKLEEEGDHE------- 1215

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
                 ED  L++VE+ +L +++L GIPGI +VFM Q +K+     +G F+++ EW+LETD
Sbjct: 1216 -----EDQILKRVEAHMLESISLRGIPGITRVFMMQ-HKMSTPDESGEFSQKQEWVLETD 1269

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN   V+    VD +RT SN+ +E   VLGIEA R+ L  EI  VI+FDG+YVNYRH++
Sbjct: 1270 GVNLAEVIAVPGVDSSRTYSNNFIEILSVLGIEATRSALYKEILNVIAFDGSYVNYRHMA 1329

Query: 546  VLV 554
            +LV
Sbjct: 1330 LLV 1332

[199][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score =  135 bits (341), Expect = 2e-30
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 2/185 (1%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            ++I A FG D+ VM SEDNA  L++R+RV   + +K                        
Sbjct: 1226 SKISAMFGQDIFVMHSEDNAENLILRIRVVDNDPEK------------------------ 1261

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFM-RQDNKIV-IDSVTGSFTKENEWLL 356
             + +  E++FL+ + SQ+L+ + L GI GI KV++ +QDNK   +D +TG +   +EW+L
Sbjct: 1262 -EAQGEEEIFLKNLASQMLAEIDLKGIKGIRKVYIVQQDNKTRRVDPITGDWRTVSEWVL 1320

Query: 357  ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
            ETDG N   V+  E VD  RT  N+ VE F V GIEA R +LL E R VI FDG+YVNYR
Sbjct: 1321 ETDGSNLAEVLAVEGVDAIRTSCNNPVEVFRVFGIEAARNSLLRETRAVIEFDGSYVNYR 1380

Query: 537  HLSVL 551
            HL++L
Sbjct: 1381 HLALL 1385

[200][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
            RepID=B0DB45_LACBS
          Length = 1742

 Score =  135 bits (340), Expect = 2e-30
 Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 2/185 (1%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            +RI   F  DL V+ SEDN+ +LVIR RV + + DK    + T                 
Sbjct: 1221 SRIAESFKTDLFVIWSEDNSEKLVIRCRV-LGSADKEDDGNGT----------------- 1262

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFT--KENEWLL 356
                  ED+FLR++E+ +L++++L G+ GI++VF+ +++KI I +  GS    +E EW+L
Sbjct: 1263 ----IEEDIFLRQLENTMLNSVSLRGVKGINRVFLMENDKITI-AKDGSIKNGQEKEWVL 1317

Query: 357  ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
            ETDGVN   VM  + VDF RT SN  VE F VLGIEA RA ++ E+R VI FDG+YVNYR
Sbjct: 1318 ETDGVNLKTVMCIDGVDFKRTYSNSCVEIFNVLGIEAARAAIMKELRGVIEFDGSYVNYR 1377

Query: 537  HLSVL 551
            HL++L
Sbjct: 1378 HLALL 1382

[201][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
            RepID=A8N128_COPC7
          Length = 1642

 Score =  135 bits (340), Expect = 2e-30
 Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 2/185 (1%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            +RI   F  DL V+ SEDN+  LVIR RV                   D+ D + V  E 
Sbjct: 1168 SRIAECFKSDLFVIWSEDNSETLVIRCRVLSSG---------------DKDDPEEVGLE- 1211

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN--EWLL 356
                  ED+FLR++E+ +L+++TL G+ GI++VF+   +++ + +  GS   E   EW+L
Sbjct: 1212 ------EDIFLRQLENTMLNSVTLRGVRGINRVFLTASDRVTL-APDGSIKTEKGAEWIL 1264

Query: 357  ETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYR 536
            ETDG N   VM  + VD TRT SN+ VE F VLG+EA RA L+ EIR VI FDG+YVNYR
Sbjct: 1265 ETDGTNLKGVMCLDGVDSTRTYSNNCVEIFTVLGVEAARAALMKEIRNVIEFDGSYVNYR 1324

Query: 537  HLSVL 551
            HL +L
Sbjct: 1325 HLGLL 1329

[202][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
            RepID=Q7Q3C6_ANOGA
          Length = 1878

 Score =  134 bits (336), Expect = 6e-30
 Identities = 80/186 (43%), Positives = 114/186 (61%), Gaps = 4/186 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+A FG DL+ + ++DNA +LV+R+R+   NED        K +  +E++ D+    ME
Sbjct: 1224 KINAGFGDDLNCIFNDDNADKLVLRIRIM--NEDN-------KFQENEEENMDK----ME 1270

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWL 353
            D     D+FLR +E+ +LS++TL GI  I KV+M        K ++ +  G F    EWL
Sbjct: 1271 D-----DMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITPEGEFKPIGEWL 1325

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            LETDG + + V+   DVD  RT SNDI E F VLGIEAVR ++  E+  V+ F G YVNY
Sbjct: 1326 LETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNNVLQFYGLYVNY 1385

Query: 534  RHLSVL 551
            RHL++L
Sbjct: 1386 RHLALL 1391

[203][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
            RepID=Q8MX30_NAEGR
          Length = 1590

 Score =  133 bits (335), Expect = 8e-30
 Identities = 74/182 (40%), Positives = 112/182 (61%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   F  D+    S+DNA +L++ VR+  ++++K   +   K    D  D      E E
Sbjct: 1180 KIQEEFQNDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAK----DPSDEVLRKLEEE 1235

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            D E++   FLR++ES +L+ L L G   + KVF+R++N   + S +G  T + +W+L+T+
Sbjct: 1236 DIENSTVEFLRRLESNMLNELALKGYKDLKKVFLREENDKKVFSSSGVATVK-QWVLDTE 1294

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            G N +AV+ H  VD T T SND+ E  +VLGIEA R  L+ E+R VI FDG+YVNYRHL+
Sbjct: 1295 GCNLLAVLSHPYVDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLA 1354

Query: 546  VL 551
            +L
Sbjct: 1355 IL 1356

[204][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151A8B3
          Length = 1018

 Score =  133 bits (334), Expect = 1e-29
 Identities = 77/183 (42%), Positives = 108/183 (59%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +I  +FG DL V+ S+D A +L+IR RV  +            P+  DE           
Sbjct: 482 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 518

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
           D +  ED  L+++E+ +L +++L GI GI +VFM Q +K+ +   TG F +  EW+LETD
Sbjct: 519 DVDAEEDQILKRIEAHMLESISLRGIQGITRVFMMQ-HKLSLPDETGEFKQGQEWVLETD 577

Query: 366 GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
           GVN   VM    VD  RT SN+ +E   VLGIEA R+ L  EI  VI+FDG+YVNYRH++
Sbjct: 578 GVNLADVMAVPGVDAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMA 637

Query: 546 VLV 554
           +LV
Sbjct: 638 LLV 640

[205][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
            Tax=Pichia guilliermondii RepID=RPB1_PICGU
          Length = 1579

 Score =  133 bits (334), Expect = 1e-29
 Identities = 77/183 (42%), Positives = 108/183 (59%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I  +FG DL V+ S+D A +L+IR RV  +            P+  DE           
Sbjct: 1048 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD------------PKSLDE----------- 1084

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
            D +  ED  L+++E+ +L +++L GI GI +VFM Q +K+ +   TG F +  EW+LETD
Sbjct: 1085 DVDAEEDQILKRIEAHMLESISLRGIQGITRVFMMQ-HKLSLPDETGEFKQGQEWVLETD 1143

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            GVN   VM    VD  RT SN+ +E   VLGIEA R+ L  EI  VI+FDG+YVNYRH++
Sbjct: 1144 GVNLADVMAVPGVDAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMA 1203

Query: 546  VLV 554
            +LV
Sbjct: 1204 LLV 1206

[206][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R4Y0_PICPG
          Length = 1743

 Score =  132 bits (332), Expect = 2e-29
 Identities = 79/184 (42%), Positives = 108/184 (58%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            ++I   F  DL VM SEDNA +L+IR RV  +            P+  DE        E+
Sbjct: 1216 DKISEVFSDDLFVMWSEDNADKLIIRCRVIRD------------PKAMDE--------EL 1255

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
            E EED     L+++E+ +L  + L GIPGI KV+M + +K+ +   +G +  E  W LET
Sbjct: 1256 EAEEDQ---MLKRIEAHMLDLIALRGIPGISKVYMVK-HKVSVPDESGEYKNEELWALET 1311

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DG+N   VM    VD +RT SN  VE   VLGIEA R++L  EI  VI+FDG+YVNYRH+
Sbjct: 1312 DGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNVIAFDGSYVNYRHM 1371

Query: 543  SVLV 554
            ++LV
Sbjct: 1372 ALLV 1375

[207][TOP]
>UniRef100_Q4N0F9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
            RepID=Q4N0F9_THEPA
          Length = 1681

 Score =  132 bits (331), Expect = 2e-29
 Identities = 77/183 (42%), Positives = 110/183 (60%), Gaps = 2/183 (1%)
 Frame = +3

Query: 9    IHAHFG-GDLHVMASEDNAAELVIRVRVAMENE-DKAGISDSTKPRFEDEQDADRVAAEM 182
            I++ F  G++  + ++DN+  LV+R+RV    E D +G SD+         +AD      
Sbjct: 1227 IYSEFSNGEIDAIYTDDNSELLVMRIRVKYGGEGDNSGPSDT---------EAD------ 1271

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLET 362
                     FL K  + +L  + L G+ GI KV+MR++N +  +S  GSF + ++W+L+T
Sbjct: 1272 ---------FLNKFMTDVLCGIKLRGVKGITKVYMREENCVRYNSAVGSFDRVSQWVLDT 1322

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DG N  +V+    VD+T+T SND+ E F V GIEA R  LL EIR VISFDGAYVNYRHL
Sbjct: 1323 DGCNLESVLPITCVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHL 1382

Query: 543  SVL 551
            S+L
Sbjct: 1383 SLL 1385

[208][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
            RepID=A8IRZ2_CHLRE
          Length = 1789

 Score =  130 bits (328), Expect = 5e-29
 Identities = 71/174 (40%), Positives = 102/174 (58%)
 Frame = +3

Query: 33   LHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDLF 212
            ++V+ ++DNA +L++R+RV    E                      A++ E  +  ED  
Sbjct: 1244 INVLVNDDNAEKLIMRIRVVKTEE----------------------ASKDESADPTEDTM 1281

Query: 213  LRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMG 392
            L+   S  + ++ L G+P I KVF+R +N+ V D   G+F K  EW+L+T+G+N   V+ 
Sbjct: 1282 LKL--SGAIMDVRLHGVPNIRKVFIRAENQHVYDKEKGAFRKYEEWILDTEGINLEQVLA 1339

Query: 393  HEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVLV 554
             E VD  RT+SN I+E  EVLGIEA RA L  E+R VI FDG+YVNYRHL+ LV
Sbjct: 1340 FEGVDSRRTMSNSIIEVLEVLGIEAARAALFKEVRNVIQFDGSYVNYRHLACLV 1393

[209][TOP]
>UniRef100_Q4UCP5 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
            RepID=Q4UCP5_THEAN
          Length = 1678

 Score =  130 bits (328), Expect = 5e-29
 Identities = 74/182 (40%), Positives = 104/182 (57%), Gaps = 1/182 (0%)
 Frame = +3

Query: 9    IHAHFG-GDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            I++ F  G++  + ++DN+  LV+R+RV    E                        E  
Sbjct: 1227 IYSEFSNGEIDAIYTDDNSELLVMRIRVKYGGE-----------------------GENS 1263

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETD 365
               D E  FL K  + +L  + L G+ GI KV+MR++N +  +S  GSF + ++W+L+TD
Sbjct: 1264 GPSDTEADFLNKFMTDVLCGIKLRGVKGITKVYMREENCVRYNSTVGSFDRVSQWVLDTD 1323

Query: 366  GVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLS 545
            G N  +V+    VD+T+T SND+ E F V GIEA R  LL EIR VISFDGAYVNYRHLS
Sbjct: 1324 GCNLESVLPITCVDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHLS 1383

Query: 546  VL 551
            +L
Sbjct: 1384 LL 1385

[210][TOP]
>UniRef100_Q2N161 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Suberites fuscus RepID=Q2N161_9METZ
          Length = 292

 Score =  129 bits (325), Expect = 1e-28
 Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 4/180 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           +I +HFG DL+ + ++DNA +LV+R+R+ M NEDK         +++DE++      +++
Sbjct: 131 KISSHFGEDLNCIFNDDNAEKLVLRIRL-MSNEDK---------KYDDEEE------QLD 174

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMR---QDNKIVID-SVTGSFTKENEWL 353
             ED  D FLR +E+ LLS++ L GI  I KV+M    QD+K  I  +  G +    EW+
Sbjct: 175 KMED--DNFLRCLEANLLSDMALQGIEQIAKVYMHYPTQDSKKRISINEDGEYKAYQEWI 232

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
           LETDGVN + V+    VD  RT SN IVE F VLGIEAVR  +  E+  VISFDG+YVNY
Sbjct: 233 LETDGVNLMRVLSEPLVDPVRTSSNHIVEIFSVLGIEAVRKAVEKELHHVISFDGSYVNY 292

[211][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
            RepID=Q5KGG3_CRYNE
          Length = 1786

 Score =  129 bits (323), Expect = 2e-28
 Identities = 72/176 (40%), Positives = 100/176 (56%)
 Frame = +3

Query: 24   GGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAE 203
            G D+ V+ SEDNA +LVIR+RV  E ED+  + D                         E
Sbjct: 1235 GKDVFVIHSEDNAPKLVIRIRVVAEKEDEELLGD-------------------------E 1269

Query: 204  DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIA 383
            D+FL+++E  LL  + L GI GI +VF+ +  ++V+ S  G + +E EW LETDG+N   
Sbjct: 1270 DMFLKRIEGTLLDQVELGGITGITRVFISEGKQVVV-SQNGEYDQEKEWFLETDGINLKE 1328

Query: 384  VMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
            VM  + V+  RT SN+  E +E LGIEA R  L  E+  VI   G+YVNYRHL++L
Sbjct: 1329 VMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIEMGGSYVNYRHLALL 1384

[212][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
           RepID=A9QMG7_9BILA
          Length = 583

 Score =  126 bits (316), Expect = 1e-27
 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 4/177 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           RIHA FG  L+V+ ++DNA +LV R+R+  ++ DK               D++    +ME
Sbjct: 426 RIHAGFGEXLNVIYTDDNAXKLVFRIRITSQDTDKG--------------DSEEQVDKME 471

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +E  +LS+LTL GI  I KV+M +    + K ++ +  G F    EWL
Sbjct: 472 D-----DMFLRCIEQNMLSDLTLQGIEQIAKVYMDKPTTDNKKRMVITPEGGFKAIPEWL 526

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
           LETDG   + V+   +VD  RT SNDI E FEVLGIEAVR  +  E+  VISFDG+Y
Sbjct: 527 LETDGTALLTVLAEPNVDPVRTSSNDICEIFEVLGIEAVRKAIEREMDQVISFDGSY 583

[213][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
            RepID=Q6FQS9_CANGA
          Length = 1715

 Score =  126 bits (316), Expect = 1e-27
 Identities = 81/184 (44%), Positives = 107/184 (58%), Gaps = 1/184 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   F  DL V+ SEDNA +L+IR RV              +P+  D        AE E
Sbjct: 1215 RIKDTFKNDLFVIWSEDNAEKLIIRCRVV-------------RPKALD--------AETE 1253

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
             EED     L+K+E+ +L N+TL GI GI++V  M+ D K+   + TG + K  EW+LET
Sbjct: 1254 AEEDH---MLKKIENTMLENITLRGIEGIERVVMMKYDRKV--PNETGEYQKVPEWVLET 1308

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN   VM    VD TR  +N  ++  EVLGIEA RA L  E+  VI+ DG+YVNYRH+
Sbjct: 1309 DGVNLSEVMTVPGVDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1368

Query: 543  SVLV 554
            ++LV
Sbjct: 1369 ALLV 1372

[214][TOP]
>UniRef100_C7GKZ2 Rpo21p n=2 Tax=Saccharomyces cerevisiae RepID=C7GKZ2_YEAS2
          Length = 1733

 Score =  125 bits (314), Expect = 2e-27
 Identities = 79/184 (42%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   F  DL V+ SEDN  +L+IR RV              +P+  D        AE E
Sbjct: 1215 RIKQTFKNDLFVIWSEDNDEKLIIRCRVV-------------RPKSLD--------AETE 1253

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
             EED     L+K+E+ +L N+TL G+  I++V  M+ D K+   S TG + KE EW+LET
Sbjct: 1254 AEEDH---MLKKIENTMLENITLRGVENIERVVMMKYDRKV--PSPTGEYVKEPEWVLET 1308

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN   VM    +D TR  +N  ++  EVLGIEA RA L  E+  VI+ DG+YVNYRH+
Sbjct: 1309 DGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1368

Query: 543  SVLV 554
            ++LV
Sbjct: 1369 ALLV 1372

[215][TOP]
>UniRef100_B3LH31 DNA-directed RNA polymerase n=1 Tax=Saccharomyces cerevisiae RM11-1a
            RepID=B3LH31_YEAS1
          Length = 1733

 Score =  125 bits (314), Expect = 2e-27
 Identities = 79/184 (42%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   F  DL V+ SEDN  +L+IR RV              +P+  D        AE E
Sbjct: 1215 RIKQTFKNDLFVIWSEDNDEKLIIRCRVV-------------RPKSLD--------AETE 1253

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
             EED     L+K+E+ +L N+TL G+  I++V  M+ D K+   S TG + KE EW+LET
Sbjct: 1254 AEEDH---MLKKIENTMLENITLRGVENIERVVMMKYDRKV--PSPTGEYVKEPEWVLET 1308

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN   VM    +D TR  +N  ++  EVLGIEA RA L  E+  VI+ DG+YVNYRH+
Sbjct: 1309 DGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1368

Query: 543  SVLV 554
            ++LV
Sbjct: 1369 ALLV 1372

[216][TOP]
>UniRef100_P04050 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Saccharomyces
            cerevisiae RepID=RPB1_YEAST
          Length = 1733

 Score =  125 bits (314), Expect = 2e-27
 Identities = 79/184 (42%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   F  DL V+ SEDN  +L+IR RV              +P+  D        AE E
Sbjct: 1215 RIKQTFKNDLFVIWSEDNDEKLIIRCRVV-------------RPKSLD--------AETE 1253

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
             EED     L+K+E+ +L N+TL G+  I++V  M+ D K+   S TG + KE EW+LET
Sbjct: 1254 AEEDH---MLKKIENTMLENITLRGVENIERVVMMKYDRKV--PSPTGEYVKEPEWVLET 1308

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN   VM    +D TR  +N  ++  EVLGIEA RA L  E+  VI+ DG+YVNYRH+
Sbjct: 1309 DGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1368

Query: 543  SVLV 554
            ++LV
Sbjct: 1369 ALLV 1372

[217][TOP]
>UniRef100_A7AWJ0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AWJ0_BABBO
          Length = 1746

 Score =  125 bits (313), Expect = 3e-27
 Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
 Frame = +3

Query: 3    NRIHAHFGGD-LHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAE 179
            +RI+  F  D +  + ++DN  ELV+R+RV   N D                       +
Sbjct: 1228 DRIYQEFSNDEIDCIHTDDNNDELVLRIRVKYSNMD----------------------VD 1265

Query: 180  MEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLE 359
             ++  + E  FL++  SQ+L N+ L G+  I KV+MR++ +   +   G F + ++W+L+
Sbjct: 1266 QQNMGENEGEFLQRFMSQVLVNVKLRGVSKITKVYMREEARTKYNETNGRFERVSQWVLD 1325

Query: 360  TDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRH 539
            TDG N   V+    VD  +++SNDI E F VLGIEA R  LL E+R VISFDG+YVNYRH
Sbjct: 1326 TDGCNLEDVLSIPCVDAQKSISNDISEIFHVLGIEAARMALLRELRAVISFDGSYVNYRH 1385

Query: 540  LSVL 551
            LS+L
Sbjct: 1386 LSLL 1389

[218][TOP]
>UniRef100_C8Z6G2 Rpo21p n=1 Tax=Saccharomyces cerevisiae EC1118 RepID=C8Z6G2_YEAST
          Length = 1733

 Score =  124 bits (310), Expect = 6e-27
 Identities = 78/184 (42%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   F  DL V+ SEDN  +L+IR RV              +P+  D        AE E
Sbjct: 1215 RIKQTFKNDLFVIWSEDNDEKLIIRCRVV-------------RPKSLD--------AETE 1253

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
             EED     L+K+E+ +L N+TL G+  I++V  M+ D K+   S TG + KE EW+LET
Sbjct: 1254 AEEDH---MLKKIENTMLENITLRGVENIERVVMMKYDRKV--PSPTGEYVKEPEWVLET 1308

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DG N   VM    +D TR  +N  ++  EVLGIEA RA L  E+  VI+ DG+YVNYRH+
Sbjct: 1309 DGANLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1368

Query: 543  SVLV 554
            ++LV
Sbjct: 1369 ALLV 1372

[219][TOP]
>UniRef100_B9FZ52 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=B9FZ52_ORYSJ
          Length = 208

 Score =  123 bits (309), Expect = 8e-27
 Identities = 60/107 (56%), Positives = 80/107 (74%)
 Frame = +3

Query: 231 QLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDF 410
           ++L+ + L GIP I+KVF++       +   G F  +NEW+L+T+GVN +AVM HEDVD 
Sbjct: 5   RILTEMALRGIPDINKVFIKYGKVNKFEDNVG-FKADNEWMLDTEGVNLLAVMCHEDVDA 63

Query: 411 TRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
           TRT SN ++E  EVLGIEAVR  LL+E+R VISFDG+YVNYRHL++L
Sbjct: 64  TRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAIL 110

[220][TOP]
>UniRef100_C5L610 DNA-directed RNA polymerase II largest subunit, putative (Fragment)
           n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5L610_9ALVE
          Length = 125

 Score =  122 bits (306), Expect = 2e-26
 Identities = 60/101 (59%), Positives = 73/101 (72%)
 Frame = +3

Query: 249 TLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSN 428
           T  GIPG+ K +MRQDNK+   +  G+F +  EW+L+TDG N   V+  E VD TRT SN
Sbjct: 10  TSRGIPGVTKCYMRQDNKVQYGNDVGTFARSREWVLDTDGCNLEQVLTMEAVDSTRTSSN 69

Query: 429 DIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
           DIVE   VLGI+A R  LLNE+R VISFDG+YVNYRH+SVL
Sbjct: 70  DIVEILNVLGIKACRKALLNELRQVISFDGSYVNYRHMSVL 110

[221][TOP]
>UniRef100_UPI0000D9E5AB PREDICTED: similar to DNA-directed RNA polymerase II largest
           subunit (RPB1) n=1 Tax=Macaca mulatta
           RepID=UPI0000D9E5AB
          Length = 259

 Score =  122 bits (305), Expect = 2e-26
 Identities = 64/121 (52%), Positives = 84/121 (69%), Gaps = 4/121 (3%)
 Frame = +3

Query: 201 EDLFLRKVESQLLSNLTLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWLLETDG 368
           +D+FLR +ES +L+++TL GI  I KV+M      + K +I +  G F    EW+LETDG
Sbjct: 3   DDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDG 62

Query: 369 VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSV 548
           V+ + V+  +DVD  RT SNDIVE F VLGIEAVR  L  E+  VISFDG+YVNYRHL++
Sbjct: 63  VSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLAL 122

Query: 549 L 551
           L
Sbjct: 123 L 123

[222][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
            54-1255 RepID=B6H9U6_PENCW
          Length = 1733

 Score =  122 bits (305), Expect = 2e-26
 Identities = 71/188 (37%), Positives = 107/188 (56%), Gaps = 5/188 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   +  D+ V+ S++NA E VIR+R   + +D                         E
Sbjct: 1230 RIKQAYPRDIAVIFSDNNADEQVIRIRQVQDYKDD------------------------E 1265

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKI-VIDSVTGSFTKEN----EW 350
            DE+   D+ L+K+E  LL  LTL G+PG+D+ F+ + +K+ V++  T   +K +    EW
Sbjct: 1266 DEDIEYDVTLKKLEQHLLDTLTLRGVPGVDRAFINEKSKVRVVEDGTLHTSKSDPLCKEW 1325

Query: 351  LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
            +LET G +  AV+    VD +RT SN  +E FEV GIEA R  +L E+  V++FDG+YVN
Sbjct: 1326 VLETSGSSLAAVLAIPGVDASRTYSNQFIEIFEVFGIEAARTAVLRELTLVLAFDGSYVN 1385

Query: 531  YRHLSVLV 554
            +RHL++LV
Sbjct: 1386 HRHLALLV 1393

[223][TOP]
>UniRef100_C5DXL0 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732
            RepID=C5DXL0_ZYGRC
          Length = 1744

 Score =  121 bits (303), Expect = 4e-26
 Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   F  DL V+ SEDNA +L+IR RV              +P+  D          +E
Sbjct: 1215 KIKETFKNDLFVIWSEDNAEQLIIRCRVV-------------RPKSMD----------LE 1251

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
             E + ED  L+K+E+ +L N+TL G+  I++V  M+ D K+   S TG + K  EW+LET
Sbjct: 1252 TEAE-EDHMLKKIENTMLENITLRGVENIERVVMMKYDRKV--PSETGEYQKIPEWVLET 1308

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN   VM    VD +R  +N  ++  EVLGIEA RA L  E+  VI+ DG+YVNYRH+
Sbjct: 1309 DGVNLSEVMTVPGVDASRIYTNSFIDIMEVLGIEAGRAALYKEVFNVIASDGSYVNYRHM 1368

Query: 543  SVLV 554
            ++LV
Sbjct: 1369 ALLV 1372

[224][TOP]
>UniRef100_Q86G96 RNA polymerase II large subunit (Fragment) n=1 Tax=Brugia malayi
           RepID=Q86G96_BRUMA
          Length = 282

 Score =  119 bits (299), Expect = 1e-25
 Identities = 75/172 (43%), Positives = 99/172 (57%), Gaps = 4/172 (2%)
 Frame = +3

Query: 3   NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
           ++IH  FG DL+V+ ++DNA +LV R+R+  +  DK           EDEQ        M
Sbjct: 130 DKIHQGFGDDLNVIYTDDNAEKLVFRLRITNQEGDKGN---------EDEQ-----VERM 175

Query: 183 EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEW 350
           ED     D+FLR +E+ +LS+LTL GI  I KV+M +    D K V+ +  G F    EW
Sbjct: 176 ED-----DVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKKRVVITPDGGFKAIPEW 230

Query: 351 LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVI 506
           LLETDG     V+  ++VD  RT SNDI E FEVLGIEAVR  +  E+  VI
Sbjct: 231 LLETDGTALAKVLSEQNVDPIRTTSNDICEIFEVLGIEAVRKAIEREMNHVI 282

[225][TOP]
>UniRef100_C8VQG7 DNA-directed RNA polymerase (EC 2.7.7.6)
            [Source:UniProtKB/TrEMBL;Acc:Q873Q6] n=2 Tax=Emericella
            nidulans RepID=C8VQG7_EMENI
          Length = 1745

 Score =  119 bits (299), Expect = 1e-25
 Identities = 72/190 (37%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   +  D+ V+ S++NA E VIR+R   + +                        E E
Sbjct: 1234 KIKQAYPRDIAVIFSDNNADEQVIRIRQIQDYK------------------------EDE 1269

Query: 186  DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN------ 344
            D++D E D+ L+K+E  LL  L L G+PG+++ F+ +  KI +    G+ T E       
Sbjct: 1270 DDDDIEYDVTLKKLEQHLLDTLNLRGVPGVERAFINEKKKIRVQE-DGALTDEQSDPLCR 1328

Query: 345  EWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
            EW+LET G +   V+    VD TRT SN  +E FEV GIEA RA +L E   V+SFDG+Y
Sbjct: 1329 EWILETSGSSLAEVLAIPGVDATRTYSNQFIEVFEVFGIEAARAAVLREFTVVLSFDGSY 1388

Query: 525  VNYRHLSVLV 554
            VN+RHL++LV
Sbjct: 1389 VNHRHLALLV 1398

[226][TOP]
>UniRef100_A7TTU2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vanderwaltozyma
            polyspora DSM 70294 RepID=A7TTU2_VANPO
          Length = 1311

 Score =  119 bits (299), Expect = 1e-25
 Identities = 77/184 (41%), Positives = 107/184 (58%), Gaps = 1/184 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   F  DL V+ SEDNA +L+IR RV              +P+  D        AE E
Sbjct: 897  KIKETFKNDLFVIWSEDNADKLIIRCRVV-------------RPKSLD--------AETE 935

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
             EED     L+K+E+ +L ++TL G+  I++V  M+ D K+   S  G++ K  EW+LET
Sbjct: 936  AEEDH---MLKKIENTMLESITLRGVEDIERVVMMKYDRKM--PSENGAYEKVPEWVLET 990

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN + VM    VD TR  +N  ++  EVLGIEA RA L  E+  VI+ DG+YVNYRH+
Sbjct: 991  DGVNLLEVMTVTGVDPTRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYVNYRHM 1050

Query: 543  SVLV 554
            ++LV
Sbjct: 1051 ALLV 1054

[227][TOP]
>UniRef100_Q75A34 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Eremothecium
            gossypii RepID=RPB1_ASHGO
          Length = 1745

 Score =  119 bits (299), Expect = 1e-25
 Identities = 76/184 (41%), Positives = 103/184 (55%), Gaps = 1/184 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   F  DL V+ SEDNA +L+IR RV                     +D   + AE E
Sbjct: 1215 KIKETFKNDLFVIWSEDNAEKLIIRCRVV--------------------RDPKTLDAEAE 1254

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
             EED     L+K+E+ +L ++TL G+  I +V  M+ D K+   S TG + K  EW+LET
Sbjct: 1255 AEEDH---MLKKIENTMLESITLRGVQDITRVVMMKYDRKV--PSETGEYHKIPEWVLET 1309

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN   VM    VD TR  +N  ++   VLGIEA RA L  E+  VI+ DG+YVNYRH+
Sbjct: 1310 DGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1369

Query: 543  SVLV 554
            ++LV
Sbjct: 1370 ALLV 1373

[228][TOP]
>UniRef100_A9QMS3 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
           RepID=A9QMS3_9PELO
          Length = 363

 Score =  119 bits (297), Expect = 2e-25
 Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
 Frame = +3

Query: 6   RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
           RIH  FG DL+V+ ++DNA +LV R+R+  ++ DK           E E+  D+    ME
Sbjct: 214 RIHQGFGDDLNVIYTDDNADKLVFRLRITNQDADKG----------ETEESVDK----ME 259

Query: 186 DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ----DNKIVIDSVTGSFTKENEWL 353
           D     D+FLR +ES +LS+LTL GI  I KV+M +    D K ++ +  G F    EWL
Sbjct: 260 D-----DVFLRCIESNMLSDLTLQGIEAISKVYMHKPTTDDKKRMVITPEGGFKAIPEWL 314

Query: 354 LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEI 494
           LETDG   + V+  + VD  RT SNDI E FEVLGIEAVR  +  E+
Sbjct: 315 LETDGTALLRVLAEQSVDPVRTSSNDICEIFEVLGIEAVRKAIEREM 361

[229][TOP]
>UniRef100_Q0U9K8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
            RepID=Q0U9K8_PHANO
          Length = 1720

 Score =  119 bits (297), Expect = 2e-25
 Identities = 68/187 (36%), Positives = 111/187 (59%), Gaps = 5/187 (2%)
 Frame = +3

Query: 9    IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 188
            I   F  +L V+ S++NA E V+RVR   +   K           +D+          ED
Sbjct: 1234 IKREFSPNLAVIFSDENADEQVMRVRFIWDGNLK-----------QDD----------ED 1272

Query: 189  EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDS-----VTGSFTKENEWL 353
            E++ ++ ++RK+E+ LL  + L G+ G+++ F+R+DN +V++      ++ S  +  EW+
Sbjct: 1273 EDERDERWMRKLETHLLDGVVLRGLKGVERAFIREDNVVVMNEDRSLVLSKSDPRCKEWV 1332

Query: 354  LETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNY 533
            L+T G +   V+  E VD T+T SN  +E   VLGIEA RA LL+E+  V+SFDG+YVN+
Sbjct: 1333 LDTTGTSLAEVLAVEGVDGTKTYSNSFIEILGVLGIEAARAGLLHELGMVLSFDGSYVNH 1392

Query: 534  RHLSVLV 554
            RH+++LV
Sbjct: 1393 RHMALLV 1399

[230][TOP]
>UniRef100_A2QAT7 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
            RepID=A2QAT7_ASPNC
          Length = 1747

 Score =  119 bits (297), Expect = 2e-25
 Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 5/189 (2%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            +RI A +  D+ V+ S++NA E VIR+R   + +             EDE          
Sbjct: 1232 SRIKAAYPKDIAVIFSDNNADEQVIRIRQIQDYK-------------EDE---------- 1268

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----E 347
            ED++   D+ L+K+E  LL  LTL G+PG+++ F+ + +K+ +      F  +      E
Sbjct: 1269 EDDDIEYDVTLKKLEQHLLDTLTLRGVPGVERAFINEKSKVRVLEDGSLFASKTDPLCKE 1328

Query: 348  WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
            W+LET G +   V+    VD TRT SN  +E FEV GIEA R  +L E+  V++FDG+YV
Sbjct: 1329 WVLETSGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1388

Query: 528  NYRHLSVLV 554
            N+RHL++LV
Sbjct: 1389 NHRHLALLV 1397

[231][TOP]
>UniRef100_B6QAY2 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224
            RepID=B6QAY2_PENMQ
          Length = 1744

 Score =  118 bits (295), Expect = 3e-25
 Identities = 74/189 (39%), Positives = 106/189 (56%), Gaps = 6/189 (3%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   +  D+ V+ S++NA E VIR+R   +                        A E E
Sbjct: 1235 RIKQQYPRDIAVIFSDNNADEQVIRIRQLHD------------------------AKEDE 1270

Query: 186  DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQ-DNKIVIDSVTGSFTKEN----E 347
            DEED E D+ L+K+E  LL  LTL G+ G+++ F+ + DN  ++D  +   +K +    E
Sbjct: 1271 DEEDMEYDVTLKKLEQHLLDTLTLRGVSGVERAFINEKDNARLMDDGSLFLSKADPLCKE 1330

Query: 348  WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
            W+LET G     V+    VD TRT SN  +E FEV GIEA R+ LL E+  V++FDG+YV
Sbjct: 1331 WVLETSGTALADVLTIPGVDTTRTYSNQFIEVFEVFGIEAARSALLRELTQVLAFDGSYV 1390

Query: 528  NYRHLSVLV 554
            N+RHL++LV
Sbjct: 1391 NHRHLALLV 1399

[232][TOP]
>UniRef100_Q6CL79 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
            RepID=Q6CL79_KLULA
          Length = 1720

 Score =  117 bits (294), Expect = 4e-25
 Identities = 74/184 (40%), Positives = 103/184 (55%), Gaps = 1/184 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   F  DL V+ SEDNA +L+IR RV                     +D   + A++E
Sbjct: 1215 KIKETFKNDLFVIWSEDNAEKLIIRCRVI--------------------RDPKTLDADVE 1254

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
             EED     L+K+E+ +L  +TL G+  I +V  M+ D K+   S TG + K  EW+LET
Sbjct: 1255 AEEDH---MLKKIENSMLEKITLRGVEDITRVVMMKYDRKV--PSETGEYHKVPEWVLET 1309

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN   VM    VD +R  +N  ++   VLGIEA RA L  E+  VI+ DG+YVNYRH+
Sbjct: 1310 DGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHM 1369

Query: 543  SVLV 554
            ++LV
Sbjct: 1370 ALLV 1373

[233][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
            RepID=Q0D054_ASPTN
          Length = 1742

 Score =  117 bits (294), Expect = 4e-25
 Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 6/189 (3%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   +  D+ V+ S++NA E VIR+R   + +D                         E
Sbjct: 1235 RIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYKDD------------------------E 1270

Query: 186  DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----E 347
            D++D E D+ L+K+E  LL  LTL G+PG+++ F+ + +K+ +      F  +      E
Sbjct: 1271 DDDDIEYDVTLKKLEQHLLDTLTLRGVPGVERAFINEKSKVRVLEDGSLFVSKTDPLCKE 1330

Query: 348  WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
            W+LET G +   V+    VD TRT SN  +E FEV GIEA R  +L E+  V++FDG+YV
Sbjct: 1331 WVLETSGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1390

Query: 528  NYRHLSVLV 554
            N+RHL++LV
Sbjct: 1391 NHRHLALLV 1399

[234][TOP]
>UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
            RepID=Q2HDK0_CHAGB
          Length = 1756

 Score =  117 bits (293), Expect = 6e-25
 Identities = 66/188 (35%), Positives = 111/188 (59%), Gaps = 5/188 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   +  D+ V+ S++NA E++IR+RV  +++DK             ++D +++   +E
Sbjct: 1231 RIKEEYKKDVAVIFSDNNAEEMIIRIRVIRQDDDK-------------DEDGNKI---IE 1274

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVI----DSVTGSFTKE-NEW 350
            D     D+ L+++E  LL N TL G+PGI++ F+ +  ++V+      V    T E  EW
Sbjct: 1275 D-----DVMLKRLEKHLLDNCTLRGVPGIERAFLNKGTRLVVMPDGSQVANKDTPECMEW 1329

Query: 351  LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
             L+T G     V+  + VD  RT +ND+ +  +V GIEA R+ L+ E+  V++FDG+YVN
Sbjct: 1330 YLDTQGTTLRDVLTIDGVDTKRTSTNDLYQIVDVFGIEAARSALMQELTQVLAFDGSYVN 1389

Query: 531  YRHLSVLV 554
            +RHL++LV
Sbjct: 1390 HRHLALLV 1397

[235][TOP]
>UniRef100_C5E245 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340
            RepID=C5E245_LACTC
          Length = 1740

 Score =  116 bits (290), Expect = 1e-24
 Identities = 74/184 (40%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   F  DL V+ SEDNA +L+IR RV                     +D   + AE E
Sbjct: 1215 KIKETFKNDLFVIWSEDNAEKLIIRCRVV--------------------RDPKTLDAEAE 1254

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV-FMRQDNKIVIDSVTGSFTKENEWLLET 362
             EED     L+++E+ +L ++TL G+  I +V  M+ D K+   S TG + K  EW+LET
Sbjct: 1255 AEEDH---MLKRIENTMLESITLRGVEDITRVVMMKYDRKV--PSPTGEYHKVPEWVLET 1309

Query: 363  DGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHL 542
            DGVN   VM    VD  R  +N  ++   VLGIEA RA L  E+  VI+ DG+YVNYRH+
Sbjct: 1310 DGVNLAEVMCVPGVDPARIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYVNYRHM 1369

Query: 543  SVLV 554
            ++LV
Sbjct: 1370 ALLV 1373

[236][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
            RepID=Q4SF83_TETNG
          Length = 1745

 Score =  115 bits (288), Expect = 2e-24
 Identities = 72/180 (40%), Positives = 103/180 (57%), Gaps = 30/180 (16%)
 Frame = +3

Query: 102  EDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKV 281
            ED+  I +S + +F+++++   V  +M+D     D+FLR +ES +L+++TL GI  I KV
Sbjct: 1143 EDQCRIMNSDEYKFQEDEE---VVDKMDD-----DVFLRCIESNMLTDMTLQGIEQISKV 1194

Query: 282  FMR----QDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSNDIVET-- 443
            +M      + K +I +  G F    EW+LETDGV+ + V+  +DVD  RT SNDIVE   
Sbjct: 1195 YMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFT 1254

Query: 444  ------------------------FEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSVL 551
                                    F+VLGIEAVR  L  E+  VISFDG+YVNYRHL++L
Sbjct: 1255 VIQSLSCLIGLRELFDGDRVPSSGFQVLGIEAVRKALERELYHVISFDGSYVNYRHLALL 1314

[237][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
          Length = 1748

 Score =  115 bits (287), Expect = 3e-24
 Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 6/189 (3%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   +  D+ V+ S++NA E VIR+R   +++                        E E
Sbjct: 1234 RIKQAYPKDIAVIFSDNNADEQVIRIRQIQDHK------------------------EDE 1269

Query: 186  DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKE-----NE 347
            D++D E D+ L+K+E  LL  LTL G+ G+++ F+ + +K+ +      FT +      E
Sbjct: 1270 DDDDIEYDVTLKKLEQHLLDTLTLRGVNGVERAFINEKSKVRVLEDGSLFTSKVDPLCKE 1329

Query: 348  WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
            W+LET G     V+    VD TRT SN  +E FEV GIEA R  +L E+  V++FDG+YV
Sbjct: 1330 WVLETSGSALGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1389

Query: 528  NYRHLSVLV 554
            N+RHL++LV
Sbjct: 1390 NHRHLALLV 1398

[238][TOP]
>UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
            RepID=B0XMU6_ASPFC
          Length = 1750

 Score =  113 bits (283), Expect = 8e-24
 Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   +  D+ V+ S++NA E VIR+R   + +                        E E
Sbjct: 1234 KIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYK------------------------EDE 1269

Query: 186  DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----E 347
            D+ED E D+ L+K+E  LL  LTL G+ G+++ F+ + +K+ +      F  +      E
Sbjct: 1270 DDEDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFINEKSKVRVLEDGSLFASKTDPLCKE 1329

Query: 348  WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
            W+LET G +   V+    VD TRT SN  +E FEV GIEA R  +L E+  V++FDG+YV
Sbjct: 1330 WVLETSGSSLGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1389

Query: 528  NYRHLSVLV 554
            N+RHL++LV
Sbjct: 1390 NHRHLALLV 1398

[239][TOP]
>UniRef100_A1D1U9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
            RepID=A1D1U9_NEOFI
          Length = 1750

 Score =  113 bits (283), Expect = 8e-24
 Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   +  D+ V+ S++NA E VIR+R   + +                        E E
Sbjct: 1234 KIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYK------------------------EDE 1269

Query: 186  DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----E 347
            D+ED E D+ L+K+E  LL  LTL G+ G+++ F+ + +K+ +      F  +      E
Sbjct: 1270 DDEDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFINEKSKVRVLEDGSLFASKTDPLCKE 1329

Query: 348  WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
            W+LET G +   V+    VD TRT SN  +E FEV GIEA R  +L E+  V++FDG+YV
Sbjct: 1330 WVLETSGSSLGEVLAVPGVDATRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1389

Query: 528  NYRHLSVLV 554
            N+RHL++LV
Sbjct: 1390 NHRHLALLV 1398

[240][TOP]
>UniRef100_B8M2Y2 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
            RepID=B8M2Y2_TALSN
          Length = 1755

 Score =  112 bits (281), Expect = 1e-23
 Identities = 69/189 (36%), Positives = 101/189 (53%), Gaps = 6/189 (3%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   +  D+ V+ S++NA E VIR+R   +                        A E E
Sbjct: 1235 RIKEQYPRDIAVIFSDNNADEQVIRIRQLHD------------------------AKEDE 1270

Query: 186  DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----E 347
            DEED E D+ L+K+E  LL  LTL G+ G+++ F+ + + + +      F  +      E
Sbjct: 1271 DEEDMEYDVTLKKLEQHLLDTLTLRGVAGVERAFINEKDNVRVMEDGSLFQSKTDPLCKE 1330

Query: 348  WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
            W+LET G     V+    VD +RT SN  +E FEV GIEA R  +L E+  V++FDG+YV
Sbjct: 1331 WVLETSGSALADVLTIPGVDTSRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYV 1390

Query: 528  NYRHLSVLV 554
            N+RHL++LV
Sbjct: 1391 NHRHLALLV 1399

[241][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
            RepID=Q9BMP2_STYMT
          Length = 1678

 Score =  112 bits (280), Expect = 2e-23
 Identities = 71/184 (38%), Positives = 104/184 (56%), Gaps = 2/184 (1%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I+  F   + V+ S++NA +LV+R+RV                   D +D         
Sbjct: 1129 KINDIFRDQIDVVKSDENAEKLVLRLRV------------------NDIED--------- 1161

Query: 186  DEEDAED-LFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENE-WLLE 359
            DEED    ++L+  + +L ++L L G+  I KV   + N  + D  TG   ++ E WL+E
Sbjct: 1162 DEEDRTVCMYLKGFQDELFNDLALKGLHEISKVTFTKYNDEIFDVETGECKQDKECWLIE 1221

Query: 360  TDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRH 539
            TDGV    V+G E +++ +TVSNDI+E   VLGIEAVR +L+NE+R V+S  G YVNYRH
Sbjct: 1222 TDGVALQKVLGLEGINYKKTVSNDIIEILRVLGIEAVRMSLINELRFVLSSYGIYVNYRH 1281

Query: 540  LSVL 551
            LS L
Sbjct: 1282 LSTL 1285

[242][TOP]
>UniRef100_C5LGU4 DNA-directed RNA polymerase II largest subunit, putative n=1
           Tax=Perkinsus marinus ATCC 50983 RepID=C5LGU4_9ALVE
          Length = 280

 Score =  111 bits (278), Expect = 3e-23
 Identities = 55/89 (61%), Positives = 65/89 (73%)
 Frame = +3

Query: 285 MRQDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIE 464
           MRQDN++   S  G+F +  EW+L+TDG N   V+  E VD TRT SNDIVE   VLGIE
Sbjct: 1   MRQDNRVQYSSDVGTFARSREWVLDTDGCNLEQVLTMEAVDSTRTFSNDIVEILNVLGIE 60

Query: 465 AVRATLLNEIRTVISFDGAYVNYRHLSVL 551
           A R  LLNE+R VISFDG+YVNYRH+SVL
Sbjct: 61  ACRKALLNELRQVISFDGSYVNYRHMSVL 89

[243][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CNZ4_ASPCL
          Length = 1765

 Score =  111 bits (277), Expect = 4e-23
 Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 5/188 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   +  D+ V+ S++NA E VIR+R   + +             EDE+          
Sbjct: 1236 RIKQAYPKDIAVIFSDNNADEQVIRIRQIQDYK-------------EDEE---------H 1273

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN-----EW 350
            D++   D+ L+K+E  LL  LTL G+ G+++ F+ + +K+ +      F  +      EW
Sbjct: 1274 DDDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFINEKSKVRVLEDGSLFASKTDPLCKEW 1333

Query: 351  LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
            +LET G +   V+    VD +RT SN  +E FEV GIEA R  +L E+  V++FDG+YVN
Sbjct: 1334 VLETSGSSLGEVLAVPGVDASRTYSNQFIEVFEVFGIEAARTAVLRELTQVLAFDGSYVN 1393

Query: 531  YRHLSVLV 554
            +RHL++LV
Sbjct: 1394 HRHLALLV 1401

[244][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
            Pt-1C-BFP RepID=B2W4S0_PYRTR
          Length = 1742

 Score =  110 bits (275), Expect = 7e-23
 Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   F  +L V+ S++NA E V+RVR   +                       +  + E
Sbjct: 1226 KIKEEFKPNLAVIFSDENADEQVMRVRFIWDQN---------------------LTKDDE 1264

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQ-------DNKIVIDSVTGSFTKEN 344
            DE++ ++ ++RK+E  LL ++TL G+PG+++ F+R+       D+  ++ S +    KE 
Sbjct: 1265 DEDERDERWMRKLEQHLLDDVTLRGVPGVERAFIREHCVTKKRDDGSLLHSKSSPECKE- 1323

Query: 345  EWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
             W+L+T G     V+    VD T T SN  +E   VLGIEA RA LL E+  V+SFDG+Y
Sbjct: 1324 -WVLDTTGTALAEVLSIPGVDATTTYSNSFIEILAVLGIEAARAGLLKELGMVLSFDGSY 1382

Query: 525  VNYRHLSVLV 554
            VN+RH+++LV
Sbjct: 1383 VNHRHMALLV 1392

[245][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
            RepID=B2AA31_PODAN
          Length = 1748

 Score =  110 bits (275), Expect = 7e-23
 Identities = 68/188 (36%), Positives = 108/188 (57%), Gaps = 6/188 (3%)
 Frame = +3

Query: 9    IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 188
            I   +  D+ V+ S++NA E+V+R+RV  +N+DK               DAD     +ED
Sbjct: 1231 IKQEYKKDVAVIFSDNNAEEMVVRIRVIRQNDDK---------------DADGNTI-IED 1274

Query: 189  EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVI---DSVTGSFTKE---NEW 350
                 D+ L+++E  LL + TL G+ GI++ F+ +  +++     S T +  KE    EW
Sbjct: 1275 -----DVMLKRLEKHLLDSCTLRGVEGIERAFLNKTARLLELPDGSQTANKDKEPACEEW 1329

Query: 351  LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
             L+T G     V+  E VD TRT +ND+ +  +V GIEA R+ L+ E+  V++FDG+YVN
Sbjct: 1330 YLDTQGTALREVLTVEGVDTTRTYTNDLYQVVDVFGIEAARSALMAELTQVLAFDGSYVN 1389

Query: 531  YRHLSVLV 554
            +RHL++LV
Sbjct: 1390 HRHLALLV 1397

[246][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
            RepID=UPI000023F34A
          Length = 1758

 Score =  109 bits (273), Expect = 1e-22
 Identities = 68/188 (36%), Positives = 105/188 (55%), Gaps = 5/188 (2%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            RI   +  DL V+ S++NA E VIR+R  +   DK           +D+ D  R    ME
Sbjct: 1229 RIKEEYPTDLAVIFSDNNADEQVIRIRT-IHTGDK-----------DDDGDGGR----ME 1272

Query: 186  DEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKENE-----W 350
            D     D+ L+++E+ LL  LTL G+PGI++ F+ +  K+  D        +++     W
Sbjct: 1273 D-----DVMLKRLEAHLLDTLTLRGVPGIERAFLTKGTKLSEDDDGALLAIKDDPRCTQW 1327

Query: 351  LLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVN 530
             L+T G     V+  + VD TRT +ND+ +  EV GIEA R+ L  E+  V++FDG+YVN
Sbjct: 1328 YLDTSGTALRDVLAVDGVDATRTYTNDLYQIVEVFGIEAARSALAKELTNVLAFDGSYVN 1387

Query: 531  YRHLSVLV 554
            +RH+++LV
Sbjct: 1388 HRHIALLV 1395

[247][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
            RepID=Q7SDN0_NEUCR
          Length = 1752

 Score =  109 bits (273), Expect = 1e-22
 Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 6/189 (3%)
 Frame = +3

Query: 3    NRIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEM 182
            +RI   +  D+ V+ S++NA E+VIR+RV   ++DK             ++D +++   +
Sbjct: 1233 HRIKEVYKKDVAVVFSDNNAEEMVIRIRVIKADDDK-------------DEDGNKI---I 1276

Query: 183  EDEEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKEN------ 344
            ED     D+ L+++E  LL   TL G+ GI++ F+ +  K+ I++  GS           
Sbjct: 1277 ED-----DVMLKRLEKHLLDGCTLRGVEGIERAFLNKGVKL-IEAKDGSMKHSKVDDECQ 1330

Query: 345  EWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
            EW L+T G +   V+  E VD  RT +ND+ +  +V GIE  RA L++E+  V++FDG+Y
Sbjct: 1331 EWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVFGIEGARAALMHELTAVLAFDGSY 1390

Query: 525  VNYRHLSVL 551
            VN+RHL++L
Sbjct: 1391 VNHRHLALL 1399

[248][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
            RepID=C5FCL2_NANOT
          Length = 1748

 Score =  109 bits (273), Expect = 1e-22
 Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 6/189 (3%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   +  D+ V+ S++NA E V+R+R   +                 +QD        E
Sbjct: 1236 KIKEAYPQDIAVIFSDNNADEQVVRIRQIQD----------------PKQD--------E 1271

Query: 186  DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKI-VIDS----VTGSFTKENE 347
            D++D E D+ L+K+ES LL  LTL G+PGI++ F+ + ++  V++      + S  +  E
Sbjct: 1272 DDDDTEYDVTLKKLESHLLDTLTLRGVPGIERAFINEKSRTRVLEDGSLHQSASDPECKE 1331

Query: 348  WLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYV 527
            W+LET G     V+    +D +RT SN  VE  EV GIEA R  LL E+  V++FDG+YV
Sbjct: 1332 WVLETSGSALADVLAIPGIDASRTYSNQFVEILEVFGIEATRTALLRELTQVLAFDGSYV 1391

Query: 528  NYRHLSVLV 554
            N+RHL++LV
Sbjct: 1392 NHRHLALLV 1400

[249][TOP]
>UniRef100_Q6JU59 RNA polymerase II largest subunit (Fragment) n=1 Tax=Semibalanus
           balanoides RepID=Q6JU59_SEMBA
          Length = 137

 Score =  108 bits (269), Expect = 3e-22
 Identities = 71/154 (46%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
 Frame = +3

Query: 69  LVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMEDEEDAEDLFLRKVESQLLSNL 248
           LV+R+R+   N D +  SD      EDEQ  DR    MED     D+FLR +ES +LS++
Sbjct: 1   LVLRIRIM--NSDDSKFSD------EDEQ-MDR----MED-----DMFLRCIESNMLSDM 42

Query: 249 TLSGIPGIDKVFMR----QDNKIVIDSVTGSFTKENEWLLETDGVNFIAVMGHEDVDFTR 416
           TL GI  I KV+M     ++ K ++ + TG F    EWLLETDG + + V+   DVD  R
Sbjct: 43  TLQGIESISKVYMHLPSTENKKRIVITETGEFKHIAEWLLETDGTSLMKVLSERDVDPIR 102

Query: 417 TVSNDIVETFEVLGIEAVRATLLNEIRTVISFDG 518
           T SNDI E F VLGIEAVR  +  EI TV+ F G
Sbjct: 103 TFSNDICEIFSVLGIEAVRKCIEKEINTVLQFYG 136

[250][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
            RepID=C4JY44_UNCRE
          Length = 1747

 Score =  108 bits (269), Expect = 3e-22
 Identities = 70/189 (37%), Positives = 102/189 (53%), Gaps = 7/189 (3%)
 Frame = +3

Query: 6    RIHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEME 185
            +I   +  D+ V+ S++NA E VIR+R   +                 +QD        E
Sbjct: 1189 KIKESYPSDIAVIFSDNNADEQVIRIRQIQD----------------PKQD--------E 1224

Query: 186  DEEDAE-DLFLRKVESQLLSNLTLSGIPGIDKVFMRQDNKIVIDSVTGSFTKE------N 344
            D++D E D+ L+K+ES LL  LTL G+ G+++ F+ + ++ V     GS  K        
Sbjct: 1225 DDDDTEYDVTLKKLESHLLDTLTLRGVAGVERAFINEKSR-VRQVEDGSLYKSAEDPQCK 1283

Query: 345  EWLLETDGVNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAY 524
            EW+LET G     V+    VD TRT SN  +E  EV GIEA R  LL E+  V++FDG+Y
Sbjct: 1284 EWVLETSGSALGDVLALPGVDSTRTYSNQFIEILEVFGIEATRTALLRELTQVLAFDGSY 1343

Query: 525  VNYRHLSVL 551
            VN+RHL++L
Sbjct: 1344 VNHRHLALL 1352