AU193522 ( PFL046f10_r )

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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
            RepID=O04142_PORYE
          Length = 1685

 Score =  154 bits (388), Expect = 4e-36
 Identities = 92/134 (68%), Positives = 97/134 (72%), Gaps = 6/134 (4%)
 Frame = +2

Query: 2    LTEPDLHLQESSNSPYLSQAALNDIHSG----GDVTELL--AKEWAQLKKDRDFLRHEVF 163
            LTEPDLHLQ       L          G    G V++ +  A+E  +L   R F      
Sbjct: 829  LTEPDLHLQGVVQFSVLVAGGSQRYPLGRRRRGAVSQGVGTAEEGPRLPTPRGF------ 882

Query: 164  KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE 343
            KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE
Sbjct: 883  KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE 942

Query: 344  VDAIAREMLPPDGS 385
            VDAIAREMLPPDGS
Sbjct: 943  VDAIAREMLPPDGS 956

[2][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 51/133 (38%), Positives = 84/133 (63%), Gaps = 15/133 (11%)
 Frame = +2

Query: 14   DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
            D  + E+  S YL+Q  ++D+ +   + + L  E+AQ+K DRD L+ E+ ++ E+K PLA
Sbjct: 893  DFGIGENRRS-YLAQEVIDDVRNDPQLIKALEDEFAQIKLDRDRLQREIIRSRESKWPLA 951

Query: 194  VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT-------------SDE 334
            VNI+RLIWN K +F++RQ+  SDL+P  I++GV++LL R  V+               D+
Sbjct: 952  VNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGDQ 1011

Query: 335  DAEVD--AIAREM 367
             AEVD  +++R++
Sbjct: 1012 VAEVDTNSVSRQL 1024

[3][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
            uvarioides RepID=Q9AXN1_9FLOR
          Length = 1712

 Score = 90.5 bits (223), Expect = 5e-17
 Identities = 42/106 (39%), Positives = 70/106 (66%)
 Frame = +2

Query: 26   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
            ++S   PYL     + I        LL  E+ ++++DRD LR+ + K+GEAK P+AVNI+
Sbjct: 821  KDSRGRPYLDWETCDSIRQDAQAHILLRNEFQRIREDRDLLRNFIAKSGEAKRPMAVNID 880

Query: 206  RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE 343
            R+IWNAK+  ++R +  SDL+P ++ +G+++LL RTRV+   +D +
Sbjct: 881  RIIWNAKQAHNIRPDSVSDLTPVQVWKGIKMLLKRTRVVEIGDDQD 926

[4][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
            RepID=O09451_9FLOR
          Length = 1732

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 43/113 (38%), Positives = 68/113 (60%)
 Frame = +2

Query: 26   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
            Q+    PYL    +  +     +   L  E+ Q++ DR  LR  + KTGE+K PLAVN++
Sbjct: 820  QDEKGRPYLDPNIVERVRQDAALHVELRLEFQQIEADRKLLRDYIIKTGESKRPLAVNVD 879

Query: 206  RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364
            R+IWNAK+  ++  +  SDL P ++++GV +LL RTRVL   ++A ++  A E
Sbjct: 880  RVIWNAKQEHNIHADSVSDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALE 932

[5][TOP]
>UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei
           RepID=B4YT42_AMPLE
          Length = 562

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL    ++  L  +   GDV   L +EW QL KDR+ LR ++F TGE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLSKDREALR-QIFPTGESKVVLPC 443

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  D+
Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD 489

[6][TOP]
>UniRef100_B4YT35 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tenomerga cinerea
           RepID=B4YT35_9COLE
          Length = 553

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL    ++  L  +   GDV   L +EW QL KDR+ LR ++F TGE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLTKDREALR-QIFPTGESKVVLPC 443

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  D+
Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD 489

[7][TOP]
>UniRef100_O02459 DNA-directed RNA polymerase (Fragment) n=1 Tax=Periplaneta
           americana RepID=O02459_PERAM
          Length = 468

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 39/106 (36%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + +N  YL    ++  L ++   GDV   L KEW QL KDR+ LR ++F +GE+K+ L  
Sbjct: 308 DPTNERYLRRIFNEDILKELMGSGDVISELEKEWEQLVKDREALR-QIFPSGESKVVLPC 366

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  D+
Sbjct: 367 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVSDLLKKCIIVAGDD 412

[8][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
            RepID=UPI0000D5670C
          Length = 2007

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 37/106 (34%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29   ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
            + SN  YL    ++  + D+   G+V   L  EW QL+KDR+ LR ++F +GE+K+ L  
Sbjct: 919  DPSNERYLRRVFTEEVIKDLMGSGEVISELETEWEQLQKDREALR-QIFPSGESKVVLPC 977

Query: 197  NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            N++R+IWN ++IF + +   +DLSP ++++GV  LL++  ++  ++
Sbjct: 978  NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLNKCVIVAGED 1023

[9][TOP]
>UniRef100_O02475 DNA-directed RNA polymerase (Fragment) n=1 Tax=Triops longicaudatus
           RepID=O02475_9CRUS
          Length = 543

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL    S+    D+ + G+V   L  EW QL +DRD LR ++F TGE K+ L  
Sbjct: 383 DPSNERYLRRIFSEDVTRDLMTSGEVISELDAEWEQLSRDRDALR-QIFPTGENKVVLPC 441

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++V+GV  LL +  V+  ++
Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLSPVRVVQGVRDLLEKCVVVKGED 487

[10][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179348F
          Length = 1862

 Score = 77.8 bits (190), Expect = 4e-13
 Identities = 36/95 (37%), Positives = 60/95 (63%)
 Frame = +2

Query: 53   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
            ++  L D+    D    L KEW QL  DRD LR E+F +GE+K+ L  N++R+IWN ++I
Sbjct: 928  TEDVLKDMMGSNDTVAELEKEWEQLTNDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986

Query: 233  FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
            F + +   +DL+P K+V GV+ LL +  ++  +++
Sbjct: 987  FHINKRGPTDLNPIKVVNGVKKLLDKCVIVAGEDE 1021

[11][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
          Length = 1422

 Score = 77.8 bits (190), Expect = 4e-13
 Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29   ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
            + +N  YL +    DI       G+V   L +EW QL KDR  LR E+F +GE+K+ L  
Sbjct: 915  DPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAVLR-EIFPSGESKVVLPC 973

Query: 197  NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            N++R+IWN ++IF + +   +DLSP K+++GV+ LL +  ++  D+
Sbjct: 974  NLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDD 1019

[12][TOP]
>UniRef100_O02462 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pedetontus saltator
           RepID=O02462_9INSE
          Length = 722

 Score = 77.8 bits (190), Expect = 4e-13
 Identities = 37/106 (34%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + +N  YL    ++  + ++   G+V   L +EW QL+KDRD LR ++F  G+ K  L  
Sbjct: 562 DPTNERYLRRIFNEDIMKELMGSGEVISELEREWEQLQKDRDCLR-QIFPNGDNKTVLPC 620

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP K++RGV+ LL +  ++  ++
Sbjct: 621 NLQRMIWNVQKIFHINKRATTDLSPLKVIRGVQHLLSKCIIVAGED 666

[13][TOP]
>UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus
           opacus RepID=B4YT36_9COLE
          Length = 629

 Score = 77.8 bits (190), Expect = 4e-13
 Identities = 38/106 (35%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIH----SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    D+       G+V   L +EW QL+KDR+ LR ++F +GE+K+ L  
Sbjct: 452 DPSNERYLRRIFNEDVSRQLMGSGEVISELEREWEQLQKDREALR-QIFPSGESKVVLPC 510

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  D+
Sbjct: 511 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLKKCIIVAGDD 556

[14][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
            RepID=UPI000186D846
          Length = 1885

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 37/106 (34%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29   ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
            +++N  YL    ++  L ++   G+V   L KEW QL+KDR+ LR ++F +GE K+ L  
Sbjct: 908  DATNERYLRRIFNENILKELMGSGEVISYLEKEWDQLQKDREALR-QIFPSGENKVVLPC 966

Query: 197  NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            N++R+IWN ++IF + +   +DLSP +++ GV  LL +  ++  ++
Sbjct: 967  NLQRMIWNVQKIFHINKRAPTDLSPLRVIEGVRDLLQKCVIVAGED 1012

[15][TOP]
>UniRef100_Q9NJJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tomocerus sp.
           jcrjws1 RepID=Q9NJJ2_9HEXA
          Length = 543

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
 Frame = +2

Query: 29  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + +N  YL    ++  + DI   G+V   + KEW  L+KDR  LR ++F TGE K+ L  
Sbjct: 383 DPTNERYLRRVFTEDVMRDIMGSGEVISAIEKEWEALQKDRAVLR-QIFPTGENKVVLPC 441

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 370
           N++R+IWN ++IF + +   +DL+P +++ GVE LL +  ++  ++     A A   L
Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLNPVRVIEGVEDLLKKCVIVVGEDRLSKQANANATL 499

[16][TOP]
>UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense
           RepID=B4YT44_9CARA
          Length = 562

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 36/106 (33%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL    ++  +  +   GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEEIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489

[17][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
            RepID=Q23699_CRAGI
          Length = 1340

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 40/107 (37%), Positives = 62/107 (57%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            LS+  + D+         L +EW QL++DRD LR  +F TG++K+ L  N++R+IWNA++
Sbjct: 845  LSEEVIKDLMGDALAVSQLDREWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQK 903

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 370
            IF +  +  +DL P K+V GVE L  R  V+   +   + A A   L
Sbjct: 904  IFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGDRLSIQANANATL 950

[18][TOP]
>UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus
           complex RepID=B4YT54_9CARA
          Length = 473

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 296 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 354

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 355 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 400

[19][TOP]
>UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion
           mandibulare RepID=B4YT49_9CARA
          Length = 562

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489

[20][TOP]
>UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion
           RepID=B4YT46_9CARA
          Length = 562

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489

[21][TOP]
>UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii
           RepID=B4YT45_9CARA
          Length = 227

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154

[22][TOP]
>UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus
           RepID=B4YT40_9COLE
          Length = 562

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI        DV   L +EW QL KDR+ LR ++F +GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSADVISELEREWEQLVKDRETLR-QIFPSGESKVVLPC 443

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +  ++DLSP ++++GV  LL +  ++  D+
Sbjct: 444 NLQRMIWNVQKIFHINKRAQTDLSPLRVIQGVRDLLQKCVIVAGDD 489

[23][TOP]
>UniRef100_B4YT34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Sialis sp. ALW-2008
           RepID=B4YT34_9NEOP
          Length = 555

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
           +  N  YL +    +I      SGGD+ + L KEW QL KDR+ LR ++F +G+ K+ L 
Sbjct: 385 DPGNERYLRRVFTEEIVRQLMASGGDLIQALEKEWDQLVKDREALR-QIFPSGDNKVVLP 443

Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            N++R+IWN ++IF +     +DLSP +++ GV  LL R  ++  D+
Sbjct: 444 CNLQRMIWNVQKIFHINGRAPTDLSPLRVLDGVSELLRRCVIVAGDD 490

[24][TOP]
>UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus
           RepID=B3FA71_9CARA
          Length = 227

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154

[25][TOP]
>UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           levettei RepID=B3FA52_9CARA
          Length = 226

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 49  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 107

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 108 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 153

[26][TOP]
>UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           coxendix RepID=B3FA50_9CARA
          Length = 225

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 48  DPSNERYLRRIFNEDIIKQLMGSGDVXSELEREWEQLSRDREALR-QIFPSGESKVVLPC 106

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 107 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 152

[27][TOP]
>UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           bifossulatum RepID=B3FA46_9CARA
          Length = 227

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154

[28][TOP]
>UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           balli RepID=B3FA45_9CARA
          Length = 220

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 43  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 101

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 102 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 147

[29][TOP]
>UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion
           RepID=B3FA43_9CARA
          Length = 227

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154

[30][TOP]
>UniRef100_B4YT41 DNA-directed RNA polymerase (Fragment) n=1 Tax=Macrogyrus oblongus
           RepID=B4YT41_9COLE
          Length = 554

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L  EW QL++DR+ LR ++F  GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSGDVISELELEWEQLRRDREALR-QIFPNGESKVVLPC 443

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL R  ++  ++
Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCVIVAGED 489

[31][TOP]
>UniRef100_O02450 DNA-directed RNA polymerase (Fragment) n=1 Tax=Limulus polyphemus
           RepID=O02450_LIMPO
          Length = 778

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
 Frame = +2

Query: 32  SSNSPYLSQAALNDIHSG--GDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 199
           +SN  YL +    D+     G  T L  L KEW +LK DR+ LR  +F TG++K+ L  N
Sbjct: 454 ASNERYLRRIFTEDVVRDLMGSATALSELEKEWEKLKHDRELLR-AIFPTGDSKVVLPCN 512

Query: 200 IERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           ++R+IW+A++IF V Q   +DLSP K++ GVE L+ +  V+  ++   + A
Sbjct: 513 LQRMIWSAQKIFHVNQRAPTDLSPLKVIGGVEELVKKLVVVPGEDRLSIQA 563

[32][TOP]
>UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus
           melanarius RepID=B4YT39_PTEME
          Length = 227

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLTRDREALR-QIFPSGESKVVLPC 108

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLKKCVIVAGED 154

[33][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QMT2_9PELO
          Length = 488

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 35/102 (34%), Positives = 64/102 (62%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
           E + + Y ++  + ++    +  + + KEWAQL++DR  LR ++F TG AK+ L  N++R
Sbjct: 118 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 176

Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           LIWNA++IF V     +DL+P +++ GV  L  +  +++ D+
Sbjct: 177 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD 218

[34][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QME0_9PELO
          Length = 633

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 35/102 (34%), Positives = 64/102 (62%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
           E + + Y ++  + ++    +  + + KEWAQL++DR  LR ++F TG AK+ L  N++R
Sbjct: 132 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 190

Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           LIWNA++IF V     +DL+P +++ GV  L  +  +++ D+
Sbjct: 191 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD 232

[35][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
           varius RepID=A8BDP1_PARVA
          Length = 467

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
 Frame = +2

Query: 14  DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
           DL+L E +   YL++  + D+ +       L +EW ++K+D+  LR ++F TG++K+ L 
Sbjct: 62  DLNLNERTLKRYLNEDIVKDLIANTHCLTELEREWERIKEDQTLLR-QIFPTGDSKVVLP 120

Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTS----DEDAEVDA 352
            N++R+IWNA++IF +     SDL P K+VRGV+ L  +  V+       + A++DA
Sbjct: 121 CNLQRIIWNAQKIFRINPRLPSDLHPLKVVRGVQELSEKLIVVKGVDRISQRAQLDA 177

[36][TOP]
>UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus
           RepID=B4YT43_9DYTI
          Length = 562

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           ++SN  YL +    D+       GDV   L  EW QL+KDR+ LR ++F +GE+ + L  
Sbjct: 385 DASNEKYLRRVFNEDVIKLMMGSGDVISELELEWDQLQKDREALR-QIFPSGESNVVLPC 443

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL R  ++   +
Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCIIVAGTD 489

[37][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179338A
          Length = 1862

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 34/95 (35%), Positives = 60/95 (63%)
 Frame = +2

Query: 53   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
            ++  L D+    D    L +EW QL  DRD LR E+F +GE+K+ L  N++R+IWN ++I
Sbjct: 928  NEDVLKDLTGSNDSVTELEREWEQLTTDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986

Query: 233  FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
            F + +  ++DL+P K++ GV+ LL +  ++   ++
Sbjct: 987  FHINKRGQTDLNPVKVINGVKELLDKCVIVAGGDE 1021

[38][TOP]
>UniRef100_Q9BNE5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Branchia sp.
           'Ere' RepID=Q9BNE5_9ARAC
          Length = 232

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 36/112 (32%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
 Frame = +2

Query: 29  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           ++SN  Y+    ++  + ++         L KEW +LKKDR+ LR  +F TG++K+ +  
Sbjct: 72  DASNERYMHRIFTEEVVRELMGSAMALSELEKEWERLKKDREVLR-TIFPTGDSKVVMPC 130

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           N++R+IWNA++IF V    ++DLSP + ++GVE L+ +  ++  ++   + A
Sbjct: 131 NLQRMIWNAQKIFHVNTRSQTDLSPLRTIKGVEDLVKKLVIVPGEDRLSIQA 182

[39][TOP]
>UniRef100_Q9BNE0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hadrurus arizonensis
           RepID=Q9BNE0_HADAR
          Length = 543

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    D+     G  T L  L +EW +L+KDR  LR  +F TG++K+ L  
Sbjct: 383 DPSNERYLRRIFTEDVVRELMGSATALSELEREWERLEKDRRVLR-SIFPTGDSKVVLPC 441

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           N++R+IWNA++IF V     +DLSP ++V+GVE L+ +  V+  ++   + A
Sbjct: 442 NLQRMIWNAQKIFHVNLRSATDLSPLRVVQGVEELVKKLVVVPGEDRLSIQA 493

[40][TOP]
>UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi
           RepID=B4YT37_9CARA
          Length = 369

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 192 DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 250

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++   +
Sbjct: 251 NLQRMIWNVQKIFHINKRAPTDLSPIRVIQGVRDLLQKCVIVAGKD 296

[41][TOP]
>UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus
           RepID=B4YT48_9CARA
          Length = 562

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI        DV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSSDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489

[42][TOP]
>UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium
           subgenus complex RepID=B3FA44_9CARA
          Length = 227

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L + W QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRDREALR-QIFPSGESKVVLPC 108

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154

[43][TOP]
>UniRef100_O02478 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vonones ornata
           RepID=O02478_9ARAC
          Length = 194

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           +++N  YL +    D+     G  T L  L +EW +LK+DR  LR  VF TG++K+ +  
Sbjct: 62  DATNERYLRRIFTEDVVRELMGSSTALSELEREWERLKEDRKMLRL-VFTTGDSKVVMPC 120

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           N+ R+IWNA++IF V     SDLSP K+++GVE L+ +  ++  ++   + A
Sbjct: 121 NLSRMIWNAQKIFHVNLRSPSDLSPFKVIQGVEKLIKKLIIVPGEDRLSIQA 172

[44][TOP]
>UniRef100_O02452 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mastigoproctus
           giganteus RepID=O02452_MASGI
          Length = 887

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 36/100 (36%), Positives = 61/100 (61%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + D+         L KEW +LKKDR+ LR  VF TG++K+ L  N++R+IWNA++I
Sbjct: 574 TEDVVRDLLGSATALSELEKEWERLKKDREVLR-TVFPTGDSKVVLPCNLQRMIWNAQKI 632

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           F V     +DLSP +++ GVE L+ +  ++  ++   + A
Sbjct: 633 FRVNARAPTDLSPFRVIHGVEDLVKKLIIVPGEDRLSIQA 672

[45][TOP]
>UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           californicum RepID=B3FA42_9CARA
          Length = 227

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 36/106 (33%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           + SN  YL +    DI       GDV   L + W QL ++R+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRBREALR-QIFPSGESKVVLPC 108

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  ++
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154

[46][TOP]
>UniRef100_A9QME8 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
           RepID=A9QME8_9BILA
          Length = 252

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
 Frame = +2

Query: 2   LTEPDLHLQESSNS---PYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172
           L E D  L  S       Y     + D+    +    + +EW QL++DR  LR ++F TG
Sbjct: 93  LFEKDFKLDLSDEKMLKKYYKDEVVRDLQGSSEALNEVEEEWRQLEEDRRLLR-KIFPTG 151

Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           +AK+ L  N++RLIWNA++IF V     +DL+P +++ GV+  L +  ++ S ED
Sbjct: 152 DAKIVLPCNLQRLIWNAQKIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED 205

[47][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
           RepID=A9QMP5_9BILA
          Length = 474

 Score = 73.2 bits (178), Expect = 9e-12
 Identities = 34/90 (37%), Positives = 57/90 (63%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + D+     V E + KEW QL++DR  LR ++F TG+AK+ L  N++RLIWNA++IF V 
Sbjct: 137 IRDLQGDSQVMEEVEKEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVE 195

Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
               + L+P ++++GV  L  +  ++  D+
Sbjct: 196 TRQPTSLNPLRVIQGVRELSEKLVIVCGDD 225

[48][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
           wirthi RepID=Q6GYH6_9BILA
          Length = 630

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 35/102 (34%), Positives = 61/102 (59%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
           E +   Y ++  + D+ S  +    +  EWAQL++DR  LR ++F TG AK+ L  N++R
Sbjct: 138 EKALKKYYTEDVVRDLVSSTEAFREVEAEWAQLEEDRQLLR-KIFPTGNAKIVLPCNLQR 196

Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           LIWNA++IF V     + L+P K+++GV  L  +  ++  ++
Sbjct: 197 LIWNAQKIFHVEMRKPTTLNPMKVIQGVRELSKKLIIVNGED 238

[49][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
            RepID=B7PJA3_IXOSC
          Length = 1937

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 33/83 (39%), Positives = 57/83 (68%)
 Frame = +2

Query: 104  LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283
            L KEW +LK+DR+ LR  +F TG++K+ L  N++R++WNA++IF V     +DLSP ++V
Sbjct: 952  LEKEWERLKRDREALR-TIFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTDLSPLRVV 1010

Query: 284  RGVELLLHRTRVLTSDEDAEVDA 352
            +GVE L+ +  ++  ++   + A
Sbjct: 1011 QGVEELVKKLVIVPGEDHLSIQA 1033

[50][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
            replicatum RepID=Q2PYS3_9FUNG
          Length = 981

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
 Frame = +2

Query: 65   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRIFDV 241
            + D+    +V ELL  E+ QL +DR  LR E+F    +  LPL VN++R+IW A+++FD 
Sbjct: 825  VKDVMESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRVIWKAQKLFDR 884

Query: 242  RQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 370
            R+  +SDL P  I++ V+ LL RT V+   ++  V+A A   L
Sbjct: 885  RK--QSDLHPRHIIKSVQELLERTVVIRGKDELSVEAQANATL 925

[51][TOP]
>UniRef100_Q2PYQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endogone pisiformis
           RepID=Q2PYQ9_9FUNG
          Length = 845

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 38/93 (40%), Positives = 55/93 (59%)
 Frame = +2

Query: 74  IHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQND 253
           I    DV  LL +E+ QL++DRD L   +FKTG+ K PL  N++RLI NA++IF + +  
Sbjct: 691 IEGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLITNAQQIFHIDRRK 750

Query: 254 RSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            SDL+P  I+ GV  L     V+   +   V+A
Sbjct: 751 PSDLNPVNIIEGVRKLSEELLVVRGSDKISVEA 783

[52][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 38/102 (37%), Positives = 60/102 (58%)
 Frame = +2

Query: 47   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
            Y+S  A  DI +  ++  +   E ++L+ DR  +  E+  TGE+  PL VN++RLIWNA+
Sbjct: 931  YMSAEAAEDIKTIQEIRNVFDAEVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQ 990

Query: 227  RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            +IF V     SD+ P +IV  VE L  R RV+  ++   ++A
Sbjct: 991  KIFKVDLRKSSDMHPMEIVEAVENLQERLRVVPGNDQISMEA 1032

[53][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
            RepID=B4MAN9_DROVI
          Length = 1889

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
 Frame = +2

Query: 35   SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +   +D+        D  + L  EW +L  DRD LR  +F  G++K+ L  N+
Sbjct: 917  SNERYMRRVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +R+IWN ++IF + +   +DLSP +++RGV+ LL R  ++T ++
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND 1019

[54][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4L732_DROMO
          Length = 1889

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
 Frame = +2

Query: 35   SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +   +D+        D  + L  EW +L  DRD LR  +F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +R+IWN ++IF + +   +DLSP +++RGV+ LL R  ++T ++
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND 1019

[55][TOP]
>UniRef100_A9QMG2 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
           RepID=A9QMG2_9BILA
          Length = 273

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 34/90 (37%), Positives = 56/90 (62%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + D+    D  E +  EWAQL++DR  LR ++F TGE+K  L  N++RLIWNA++IF V 
Sbjct: 134 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIFSTGESKCVLPCNLQRLIWNAQKIFHVE 192

Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           + +   L+P  ++RGV  L  +  ++  ++
Sbjct: 193 KREPVCLNPLNVIRGVRSLSEKLIIVGGED 222

[56][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
           dolichuroides RepID=A9QMG1_9BILA
          Length = 629

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 34/90 (37%), Positives = 56/90 (62%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + D+    D  E +  EWAQL++DR  LR +++ TGE+K  L  N++RLIWNA++IF V 
Sbjct: 151 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIYATGESKCVLPCNLQRLIWNAQKIFHVE 209

Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           + +   L+P  ++RGV  L  +  ++  D+
Sbjct: 210 KREPVCLNPLNVIRGVRSLSEKLIIVGGDD 239

[57][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
            RepID=Q30BD8_CYAPA
          Length = 1000

 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 38/102 (37%), Positives = 60/102 (58%)
 Frame = +2

Query: 47   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
            +L      +I     +   L KE+ QL KDR+ LR E+ ++GE  + L VN++RLIWNA+
Sbjct: 830  FLDPDVAAEIRGSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQ 889

Query: 227  RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            +I+ V  +  SDL P  I++GVELL  +  V+  ++    +A
Sbjct: 890  KIYKVDTSKPSDLRPDIILQGVELLSTQLVVIAGEDTLSREA 931

[58][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MQ29_DROAN
          Length = 1889

 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
 Frame = +2

Query: 35   SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +   +D+        D  + L  EW +L  DRD LR ++F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDDVIKEMTDSSDAIQELEAEWDRLVTDRDSLR-QIFPNGDSKVVLPCNL 975

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 1019

[59][TOP]
>UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis
            RepID=Q2TUN5_EPHVI
          Length = 1013

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 38/109 (34%), Positives = 62/109 (56%)
 Frame = +2

Query: 26   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
            QE+ +  Y+     +DI +  +  ++L  E+ +L+ DR  L  E+  TGE   PL VN++
Sbjct: 843  QENWHPTYMLPEMADDIKNISEFQDVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVNLK 902

Query: 206  RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            RLIWNA++IF V     SD+ P +IV  ++ L  R +V+  D+    +A
Sbjct: 903  RLIWNAQKIFKVDPRKTSDMQPLEIVDTIDKLQERLKVVPGDDPLSFEA 951

[60][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           plicata RepID=Q6E226_9PELO
          Length = 636

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 34/95 (35%), Positives = 58/95 (61%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           + + + +I    D  E +  EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 144 TDSVIREIQESEDAIEKVESEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 202

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           F V      DLSP  ++ GV  +  +  +++ ++D
Sbjct: 203 FKVDTRKPVDLSPLHVIDGVREISSKLIIVSGNDD 237

[61][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=O01364_9BILA
          Length = 633

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 34/97 (35%), Positives = 59/97 (60%)
 Frame = +2

Query: 47  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
           + ++  + D+    +    +  EWAQL++DR  LR ++F TG+AK+ L  N++RL+WNA+
Sbjct: 138 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 196

Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           +IF V     +DL+P +++ GV   L +  V+   ED
Sbjct: 197 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED 232

[62][TOP]
>UniRef100_A9QMQ5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=A9QMQ5_9BILA
          Length = 276

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 34/97 (35%), Positives = 59/97 (60%)
 Frame = +2

Query: 47  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
           + ++  + D+    +    +  EWAQL++DR  LR ++F TG+AK+ L  N++RL+WNA+
Sbjct: 131 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 189

Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           +IF V     +DL+P +++ GV   L +  V+   ED
Sbjct: 190 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED 225

[63][TOP]
>UniRef100_A9QMG3 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata
           RepID=A9QMG3_9BILA
          Length = 270

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 33/97 (34%), Positives = 60/97 (61%)
 Frame = +2

Query: 47  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
           +  +  + ++    +    + +EW QL++DR  LR ++F TG+AK+ L  N++RLIWNA+
Sbjct: 123 HYKEEVVRELQGSSEALTEIEEEWRQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 181

Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           +IF V     +DL+P +++ GV+  L +  ++ S ED
Sbjct: 182 KIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED 217

[64][TOP]
>UniRef100_Q9PTX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lethenteron
           reissneri RepID=Q9PTX4_LAMRE
          Length = 595

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 34/95 (35%), Positives = 59/95 (62%)
 Frame = +2

Query: 50  LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
           L +  +NDI S   +   L KE+ +++ DRD LR  VF TG++K+ L  N+ R+IWNA++
Sbjct: 433 LQEEVVNDIMSNAHIQNELDKEFDRVRSDRDTLR-SVFPTGDSKVVLPCNLMRMIWNAQK 491

Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           IF +     +D++P +I+ GV+ L  R  ++  ++
Sbjct: 492 IFHINTRQPTDINPLRIIEGVQDLSKRLMIVKGED 526

[65][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
            RepID=Q84KP6_CYAME
          Length = 1819

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 39/102 (38%), Positives = 62/102 (60%)
 Frame = +2

Query: 47   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
            Y+    ++ + +  +V   L +E+ QL  DR+ L   VF TGEAK PL VN++RLI N +
Sbjct: 924  YIEPDLIDAVRTDPEVALELEEEYQQLLADREQLC-AVFPTGEAKWPLMVNVQRLIQNCR 982

Query: 227  RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
             IF ++ +  SDL P +I++GV +LL R  V+  D++   +A
Sbjct: 983  SIFGIQHDTLSDLHPRQIIQGVRVLLQRCVVVPGDDELSREA 1024

[66][TOP]
>UniRef100_Q9NJM1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hanseniella sp.
           'Han' RepID=Q9NJM1_9MYRI
          Length = 468

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 32/94 (34%), Positives = 57/94 (60%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + D+     V   L KEW  L+KDR  LR E+F  G++K+ L  N++R+IWNA++I
Sbjct: 320 TEDVVKDLIGSAQVLSELEKEWELLQKDRKSLR-EIFPKGDSKVVLPCNLQRMIWNAQKI 378

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           F + Q   +DL+P +++ GV  L  +  ++  ++
Sbjct: 379 FHINQRSATDLNPVRVIEGVRELTKKIVIVVGED 412

[67][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           drosophilae RepID=Q6E224_9PELO
          Length = 633

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 35/102 (34%), Positives = 58/102 (56%)
 Frame = +2

Query: 47  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
           Y S+  + D++   D  E +  EW QL++DR  LR ++F  G+AK+ L  N++RL+WNA+
Sbjct: 141 YYSEDVIRDLNESEDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 199

Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           +IF V      +LSP  ++ GV  L  +  ++   +D    A
Sbjct: 200 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDDISKQA 241

[68][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
           RepID=Q6E223_9PELO
          Length = 606

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 35/102 (34%), Positives = 58/102 (56%)
 Frame = +2

Query: 47  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
           Y S+  + D++   D  E +  EW QL++DR  LR ++F  G+AK+ L  N++RL+WNA+
Sbjct: 125 YYSEDVIRDLNESPDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 183

Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           +IF V      +LSP  ++ GV  L  +  ++   +D    A
Sbjct: 184 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDDISKQA 225

[69][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila simulans RepID=Q1WKU2_DROSI
          Length = 746

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 31/90 (34%), Positives = 58/90 (64%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + ++    +  + L  EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + 
Sbjct: 73  IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 131

Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           +   +DLSP ++++GV+ LL R  ++T ++
Sbjct: 132 KRLPTDLSPIRVIKGVKTLLERCVIVTGND 161

[70][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4IK28_DROSE
          Length = 1887

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 31/90 (34%), Positives = 58/90 (64%)
 Frame = +2

Query: 65   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
            + ++    +  + L  EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + 
Sbjct: 931  IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989

Query: 245  QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +   +DLSP ++++GV+ LL R  ++T ++
Sbjct: 990  KRLPTDLSPIRVIKGVKTLLERCVIVTGND 1019

[71][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
            RepID=A9UNH9_DROME
          Length = 1887

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 31/90 (34%), Positives = 58/90 (64%)
 Frame = +2

Query: 65   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
            + ++    +  + L  EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + 
Sbjct: 931  IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989

Query: 245  QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +   +DLSP ++++GV+ LL R  ++T ++
Sbjct: 990  KRLPTDLSPIRVIKGVKTLLERCVIVTGND 1019

[72][TOP]
>UniRef100_A9QMP1 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis mediterranea
           RepID=A9QMP1_9PELO
          Length = 276

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 31/94 (32%), Positives = 58/94 (61%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + D+    +  + + +EW QL+ DR  LR ++F TG+AK+ L  N++RLIWNA++I
Sbjct: 127 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 185

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           F V     +DLSP +++ GV  +  +  ++  ++
Sbjct: 186 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED 219

[73][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
           RepID=A9QMF9_9BILA
          Length = 618

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHS--GGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
           E +   + ++  ++D+      D  E +  EWAQL++DR  LR ++F TG AK+ L  N+
Sbjct: 125 EKTMKKFFTEDVIHDLQGPDSKDAIETVEAEWAQLEEDRRLLR-KIFPTGNAKVVLPCNL 183

Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           +RLIWN ++IF V     + L+P K++ GV+ L  +  +++ D+     A
Sbjct: 184 QRLIWNXQKIFRVETRKPTSLNPLKVISGVQELSKKLIIVSGDDSISKQA 233

[74][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
           RepID=A9QMF8_9BILA
          Length = 621

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 36/103 (34%), Positives = 60/103 (58%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
           E S     ++  + ++    D  +    EW QL++DR  LR ++F TG+AK+ L  N++R
Sbjct: 136 EKSLRTLYTEDVVRELQGSSDALKEAEAEWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194

Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           LIWNA++IF V     +DL+P +++ GV  L  +  ++ S ED
Sbjct: 195 LIWNAQKIFHVETRKPTDLNPIRVIEGVRELSSKL-IIVSGED 236

[75][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
           mediterranea RepID=A9QME7_9PELO
          Length = 618

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 31/94 (32%), Positives = 58/94 (61%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + D+    +  + + +EW QL+ DR  LR ++F TG+AK+ L  N++RLIWNA++I
Sbjct: 141 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 199

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           F V     +DLSP +++ GV  +  +  ++  ++
Sbjct: 200 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED 233

[76][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
            melanogaster RepID=RPB1_DROME
          Length = 1887

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 31/90 (34%), Positives = 58/90 (64%)
 Frame = +2

Query: 65   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
            + ++    +  + L  EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + 
Sbjct: 931  IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989

Query: 245  QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +   +DLSP ++++GV+ LL R  ++T ++
Sbjct: 990  KRLPTDLSPIRVIKGVKTLLERCVIVTGND 1019

[77][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
            pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
          Length = 1811

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
 Frame = +2

Query: 35   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +      + ++    +  + L  EW  L +DRD LR ++F  G++K+ L  N+
Sbjct: 839  SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 897

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
            +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T
Sbjct: 898  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 938

[78][TOP]
>UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri
           RepID=Q9U5F6_EPTBU
          Length = 595

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 31/95 (32%), Positives = 60/95 (63%)
 Frame = +2

Query: 50  LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
           L +  ++++ S   +   L +E+ Q++ DR+ LR  VF TG++K+ L  N++R+IWNA++
Sbjct: 433 LHEDVVSEVMSSAHIQNCLEREFEQIRDDREVLR-AVFPTGDSKVVLPCNLQRMIWNAQK 491

Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           IF +     +DL+P ++V GV  L  + +++  D+
Sbjct: 492 IFHINTRSSTDLNPLRVVEGVNDLTQKLQIVKGDD 526

[79][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
           RepID=Q6E228_9BILA
          Length = 621

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 34/103 (33%), Positives = 63/103 (61%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
           E +   + ++  + D+    +  + +  EW QL++DR  LR ++F TG+AK+ L  N++R
Sbjct: 136 EKTLRKFYTEEVVRDLQGSTEAMKEVESEWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194

Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           LIWNA++IF V     +DL+P +++ G++ L  +  ++ S ED
Sbjct: 195 LIWNAQKIFHVETRKPTDLNPLRVIDGIKELSSKL-IIVSGED 236

[80][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
            pseudoobscura RepID=Q29IN2_DROPS
          Length = 1889

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
 Frame = +2

Query: 35   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +      + ++    +  + L  EW  L +DRD LR ++F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
            +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016

[81][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
            RepID=B4H2R8_DROPE
          Length = 1804

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
 Frame = +2

Query: 35   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +      + ++    +  + L  EW  L +DRD LR ++F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
            +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016

[82][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QME1_9BILA
          Length = 628

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
 Frame = +2

Query: 2   LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172
           L E D  L    E +   Y ++  + ++    +  + + +EW QL++DR  LR ++F  G
Sbjct: 117 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 175

Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
            AK+ L  N++RL+WNA++IF V     +DL+P +++ GV  L  +  ++ S ED
Sbjct: 176 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKL-IIVSGED 229

[83][TOP]
>UniRef100_Q2N1B5 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Platynereis dumerilii RepID=Q2N1B5_PLADU
          Length = 248

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 34/101 (33%), Positives = 57/101 (56%)
 Frame = +2

Query: 50  LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
           +++  + D+       + L  EW QL  DR+ LR  +F TG+AK+ L  N+ RLIWNA++
Sbjct: 76  MTEEVIKDLAGNTTAIQTLDHEWEQLMADRERLRG-IFPTGDAKIVLPCNLNRLIWNAQK 134

Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           IF +     +DL P K+V G+  L  +  ++  ++   +DA
Sbjct: 135 IFRINIRKPTDLHPVKVVEGIRELSKKFLIVKGEDKLSIDA 175

[84][TOP]
>UniRef100_A9QMT4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis sp.
           JU274 RepID=A9QMT4_9PELO
          Length = 280

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 34/97 (35%), Positives = 62/97 (63%)
 Frame = +2

Query: 47  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
           + ++  + +I    +  +L+ +EWAQL++DR  LR ++F  G+AK+ L  N+ RLIWNA+
Sbjct: 137 FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 195

Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           +IF V     ++L+P++++ GV   L +  ++ S ED
Sbjct: 196 KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED 231

[85][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
           RepID=A9QMH3_9BILA
          Length = 619

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
 Frame = +2

Query: 2   LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172
           L E D  L    E +   Y ++  + ++    +  + + +EW QL++DR  LR ++F +G
Sbjct: 116 LFEQDFKLDLSDERTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPSG 174

Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
            AK+ L  N++RL+WNA++IF V     +DL+P +++ GV   L +  ++ S ED
Sbjct: 175 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED 228

[86][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
           RepID=A9QME6_9PELO
          Length = 526

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 34/97 (35%), Positives = 62/97 (63%)
 Frame = +2

Query: 47  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
           + ++  + +I    +  +L+ +EWAQL++DR  LR ++F  G+AK+ L  N+ RLIWNA+
Sbjct: 39  FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 97

Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           +IF V     ++L+P++++ GV   L +  ++ S ED
Sbjct: 98  KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED 133

[87][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila erecta RepID=Q1WKU4_DROER
          Length = 760

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
 Frame = +2

Query: 35  SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
           SN  Y+ +   +D+        +  + L  EW +L  DRD LR ++F  G++K+ L  N+
Sbjct: 59  SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117

Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 161

[88][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
           Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
          Length = 766

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
 Frame = +2

Query: 35  SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
           SN  Y+ +   +D+        +  + L  EW +L  DRD LR ++F  G++K+ L  N+
Sbjct: 59  SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117

Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 161

[89][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4PY98_DROYA
          Length = 1889

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
 Frame = +2

Query: 35   SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +   +D+        +  + L  EW +L  DRD LR ++F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 1019

[90][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4NDK9_DROWI
          Length = 1890

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 31/90 (34%), Positives = 57/90 (63%)
 Frame = +2

Query: 65   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
            + ++    D  + L  EW +L  DRD LR ++F  G++K+ L  N++R+IWN ++IF + 
Sbjct: 931  IKEMTDSSDAIQELESEWDRLVVDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHIN 989

Query: 245  QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +   +DLSP ++++GV  LL R  ++T ++
Sbjct: 990  KRLPTDLSPMRVIKGVRGLLERCVIVTGND 1019

[91][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4JXA6_DROGR
          Length = 1889

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 38/105 (36%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
 Frame = +2

Query: 35   SNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 199
            SN  Y+ +   +D+      S   + EL A EW  L  DRD LR  +F+ G++K+ L  N
Sbjct: 917  SNERYMRKVFADDVIKEITESSVAIQELEA-EWDHLVTDRDNLR-TIFRNGDSKVVLPCN 974

Query: 200  IERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            ++R+IWN ++IF + +   +DLSP +++RGV  LL+R  ++T ++
Sbjct: 975  LQRMIWNVQKIFHINKRLPTDLSPMRVIRGVSDLLNRCVIVTGND 1019

[92][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NUC1_DROER
          Length = 1889

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
 Frame = +2

Query: 35   SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +   +D+        +  + L  EW +L  DRD LR ++F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 1019

[93][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
           subgroup RepID=A9YGC1_DROME
          Length = 247

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 31/77 (40%), Positives = 53/77 (68%)
 Frame = +2

Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283
           L  EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + +   +DLSP +++
Sbjct: 1   LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 59

Query: 284 RGVELLLHRTRVLTSDE 334
           +GV+ LL R  ++T ++
Sbjct: 60  KGVKTLLERCVIVTGND 76

[94][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
           RepID=A9QMS7_9BILA
          Length = 407

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 34/91 (37%), Positives = 59/91 (64%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + ++ +  +  + + +EW QL+ DR  LR ++F TG+A + L  N++R++WNA++IF V 
Sbjct: 148 IRELQNSPEALQAVEEEWIQLESDRRLLR-KIFPTGKAGVVLPCNLDRMMWNARKIFHVE 206

Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
               +DLSP K+++GV+ L  R  V+ S ED
Sbjct: 207 TRKPTDLSPLKVIQGVKDLTSRL-VIVSGED 236

[95][TOP]
>UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
           RepID=A9QMD9_9BILA
          Length = 595

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 59/97 (60%)
 Frame = +2

Query: 47  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
           + S+  + ++    +    +  EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA+
Sbjct: 102 HYSEDVVRELMGSPEALREVEGEWAQLEEDRRLLR-KIFPNGDAKIVLPCNLQRLIWNAQ 160

Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           +IF +     +DLSP +++ GV   L R  ++ S ED
Sbjct: 161 KIFHIELRKPTDLSPLRVIEGVR-ELSRKLIIVSGED 196

[96][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 15/113 (13%)
 Frame = +2

Query: 71   DIHSGG---------------DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
            D+H GG               ++ +LL +E+AQL+ DR+ LRHE+F++ + ++ L +N+ 
Sbjct: 914  DLHDGGFKKGTLRPGLGDWSQELQDLLDEEFAQLEFDRNLLRHEIFQSDQVQVRLPMNVA 973

Query: 206  RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364
            RL+ NA++IF V     +DLSP++++ G+  +L R  V+  D     D I+RE
Sbjct: 974  RLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE 1021

[97][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q9NJN3_ARMVU
          Length = 433

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
 Frame = +2

Query: 14  DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 181
           D +  + +N  YL    ++  + ++    +   +L  EW +L++DR  LR +VF  G+ K
Sbjct: 75  DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 133

Query: 182 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           + L  N+ER+IWN ++IF + +  ++DLSP K+V GV   L +  +++ ++   V A
Sbjct: 134 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGEDRISVQA 190

[98][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q6JU60_ARMVU
          Length = 736

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
 Frame = +2

Query: 14  DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 181
           D +  + +N  YL    ++  + ++    +   +L  EW +L++DR  LR +VF  G+ K
Sbjct: 378 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 436

Query: 182 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           + L  N+ER+IWN ++IF + +  ++DLSP K+V GV   L +  +++ ++   V A
Sbjct: 437 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGEDRISVQA 493

[99][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila orena RepID=Q1WKU3_DROOR
          Length = 750

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
 Frame = +2

Query: 35  SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
           SN  Y+ +   +D+        +  + L  EW  L  DRD LR ++F  G++K+ L  N+
Sbjct: 59  SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDHLVGDRDSLR-QIFPNGDSKVVLPCNL 117

Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 161

[100][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
           halicti RepID=P90678_9BILA
          Length = 631

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 33/100 (33%), Positives = 59/100 (59%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + D+ S  +  +    EW QL+ DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 140 TEDVIRDVQSSSESIKEAELEWMQLQDDRQLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 198

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           F V     +DL+P ++++GV  +  +  ++  D+   V A
Sbjct: 199 FHVETRKVTDLNPVRVIQGVREVSKKLIIVGGDDRISVQA 238

[101][TOP]
>UniRef100_O02428 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dysdera
           crocata RepID=O02428_DYSCR
          Length = 240

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
 Frame = +2

Query: 35  SNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
           +N  YL +   +D+     G  T +    +EW +LK DR  LR  +F TG++K+ L  N+
Sbjct: 82  TNERYLRRIFTDDVIREISGSTTAISEFEREWDKLKTDRGILRI-IFPTGDSKVVLPCNL 140

Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            R+IWNA++IF V     +DLSP ++++GV+ L+ +  ++  ++   V A
Sbjct: 141 SRMIWNAQKIFHVNTRAPTDLSPIRVMKGVDELVKKLTIVAGEDRLSVQA 190

[102][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
            RepID=B0XAQ9_CULQU
          Length = 1874

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 30/94 (31%), Positives = 60/94 (63%)
 Frame = +2

Query: 53   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
            ++  + ++   GDV + +  E+ QL +DR+ LR ++F  G++K+ L  N++R+IWN ++I
Sbjct: 925  NEEVIKELTESGDVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983

Query: 233  FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            F + +   +DLSP K+++GV  LL +  ++   +
Sbjct: 984  FHINKRAPTDLSPLKVIQGVRDLLQKCVIVAGTD 1017

[103][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QMP3_9BILA
          Length = 406

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
 Frame = +2

Query: 2   LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172
           L E D  L    E +   Y ++  + ++    +  + + +EW QL++DR  LR ++F  G
Sbjct: 124 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 182

Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSD 331
            AK+ L  N++RL+WNA++IF V     +DL+P +++ GV  L  +  +++ +
Sbjct: 183 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKLIIVSGE 235

[104][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMF5_9BILA
          Length = 630

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/80 (40%), Positives = 52/80 (65%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + D+ S  D  + +  EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 136 TEEVIRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 194

Query: 233 FDVRQNDRSDLSPSKIVRGV 292
           F V     +DL P +++ GV
Sbjct: 195 FHVETRKPTDLHPLRVIEGV 214

[105][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
            aggregatum RepID=Q2PYS6_9FUNG
          Length = 1016

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 37/91 (40%), Positives = 53/91 (58%)
 Frame = +2

Query: 80   SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRS 259
            S G     L +E+ QL+KDR+ LR  +FK G +  PL VN++RLIWNA+  F+V     +
Sbjct: 864  SDGLTQNRLDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWNAQNQFEVGPRKPT 923

Query: 260  DLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            DL P  I   VE LL +  V+  ++   V+A
Sbjct: 924  DLHPLHITESVEQLLDKLVVVRGNDPLSVEA 954

[106][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
           elegans RepID=Q6JTX1_9BILA
          Length = 304

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 31/106 (29%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
 Frame = +2

Query: 29  ESSNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           ++SN  YL +      +N I +   V + L +E+ Q+K+DR+ +R ++F TG++++ L  
Sbjct: 54  QTSNERYLRRLYEPDIVNSIMTDAGVPQALEQEFEQMKRDREIIR-KIFPTGDSRVVLPC 112

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           N++R++WNA++IF ++    +DL P ++V G+  L+ +  ++  ++
Sbjct: 113 NLQRMVWNAQKIFHIKGRGTTDLHPVRVVEGLNELMKKLVIVKGED 158

[107][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
           armata SB363 RepID=A9UEE2_9BILA
          Length = 475

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 34/75 (45%), Positives = 52/75 (69%)
 Frame = +2

Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292
           EWAQL++DR  LR ++F TG+AK+ L  N++RLIWNA++IF V     +DL+P +++ G+
Sbjct: 154 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGI 212

Query: 293 ELLLHRTRVLTSDED 337
             L  +  V+ S ED
Sbjct: 213 RELSTKL-VIVSGED 226

[108][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 38/95 (40%), Positives = 56/95 (58%)
 Frame = +2

Query: 68   NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 247
            NDI    +V  +L +E+ QL  DR  LR EVF  G+   PL VNI R++ N++RIF+V +
Sbjct: 920  NDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQRIFNVDK 979

Query: 248  NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            +  SDL+  +IV GV+ L  R  ++  D     +A
Sbjct: 980  SKVSDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEA 1014

[109][TOP]
>UniRef100_A1YIA8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taphrina deformans
            RepID=A1YIA8_9ASCO
          Length = 1001

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 39/111 (35%), Positives = 67/111 (60%)
 Frame = +2

Query: 2    LTEPDLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 181
            +T+PD  +  S   P       +DI    +V +LL +E+ +L +DR  L+  +F +G++ 
Sbjct: 824  VTDPDRTIPPSFFEPG------HDIDGDFEVQKLLDQEFKELSEDRRDLQTLIFPSGDSS 877

Query: 182  LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
             PL VN++R+I N+K+IF +  + R+DLSP+KI  GV  LL R  ++  ++
Sbjct: 878  WPLPVNLDRIILNSKQIFHIAPHRRTDLSPAKIYTGVRDLLSRLIIVRGND 928

[110][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
           RepID=O04144_9VIRI
          Length = 613

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 36/109 (33%), Positives = 60/109 (55%)
 Frame = +2

Query: 26  QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
           QE  +  Y+      D     +  +++  E  QL++DR  L  E+  TG++  PL VNI+
Sbjct: 431 QEDWSPDYMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIK 490

Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           RLIWNA++IF +     SD++P  +V G++ L  R +V+  D+    +A
Sbjct: 491 RLIWNAQKIFKIDLRKPSDMNPMDVVDGMDKLQERLKVVVGDDHISREA 539

[111][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SXC0_RICCO
          Length = 1855

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 36/108 (33%), Positives = 62/108 (57%)
 Frame = +2

Query: 29   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
            E+ N  Y+ Q  ++D+ +  ++ ++   E  +L+ DR  L  E+  TG++  PL VN+ R
Sbjct: 922  ENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRR 981

Query: 209  LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            LIWNA++ F V +   SD+ P + V  V+ L  R +V+  D+   V+A
Sbjct: 982  LIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVPGDDPLSVEA 1029

[112][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
            RepID=Q9XZS2_DROMD
          Length = 1889

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
 Frame = +2

Query: 35   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +      + +I    +  + L  EW  L  DRD LR  +F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDEVIKEITDSSEAIQDLESEWDNLMHDRDNLR-VIFPNGDSKVVLPCNL 975

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
            +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016

[113][TOP]
>UniRef100_Q9BNL1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Orthoporus
           ornata RepID=Q9BNL1_9MYRI
          Length = 222

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 33/83 (39%), Positives = 51/83 (61%)
 Frame = +2

Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283
           L KEW  LK+DR+ LRH +F  G+ K+ L  N++R+IWNA++IF +     +DLSP K++
Sbjct: 91  LEKEWETLKRDRELLRH-IFPKGDNKVVLPGNLQRMIWNAQKIFHINLRAPTDLSPLKVI 149

Query: 284 RGVELLLHRTRVLTSDEDAEVDA 352
            GV  L  R  ++  ++     A
Sbjct: 150 DGVRELSKRLVIVPGEDSLSKQA 172

[114][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMP7_9BILA
          Length = 440

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 32/76 (42%), Positives = 50/76 (65%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + D+ S  D  + +  EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V 
Sbjct: 103 IRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVE 161

Query: 245 QNDRSDLSPSKIVRGV 292
               +DL P +++ GV
Sbjct: 162 TRKPTDLHPLRVIEGV 177

[115][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
           dermatitica RepID=A9QMG4_9PELO
          Length = 478

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 33/94 (35%), Positives = 57/94 (60%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + D+    +  + +  EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++I
Sbjct: 126 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 184

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           F V     S L+P K+V GV+ L H+  ++  D+
Sbjct: 185 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD 218

[116][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
           strongyloides dermatitica RepID=A9QMF0_9PELO
          Length = 633

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 33/94 (35%), Positives = 57/94 (60%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + D+    +  + +  EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++I
Sbjct: 145 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 203

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           F V     S L+P K+V GV+ L H+  ++  D+
Sbjct: 204 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD 237

[117][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 34/101 (33%), Positives = 60/101 (59%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L++  L +I+S    T  + +E+ QLK DR+ LR+ +F  G  K+ L V + RLIWN+++
Sbjct: 934  LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            +F V    ++DLSP K++  ++ L  R  V+  ++    +A
Sbjct: 993  MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEA 1033

[118][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 34/101 (33%), Positives = 60/101 (59%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L++  L +I+S    T  + +E+ QLK DR+ LR+ +F  G  K+ L V + RLIWN+++
Sbjct: 935  LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 993

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            +F V    ++DLSP K++  ++ L  R  V+  ++    +A
Sbjct: 994  MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEA 1034

[119][TOP]
>UniRef100_Q2TUN8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taxus canadensis
            RepID=Q2TUN8_TAXCA
          Length = 1013

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 34/109 (31%), Positives = 61/109 (55%)
 Frame = +2

Query: 26   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
            QE+ N  Y+    ++D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++
Sbjct: 843  QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIATTGDNSWPMPVNLK 902

Query: 206  RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            RLIWNA++ F +    RSD+ P +IV  ++ L  R +V+  D+   ++A
Sbjct: 903  RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLMSIEA 951

[120][TOP]
>UniRef100_O02416 RNA polymerase II largest subunit (Fragment) n=1 Tax=Aphonopelma
           chalcodes RepID=O02416_APHCH
          Length = 240

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
 Frame = +2

Query: 29  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
           +++N  YL    ++  + D+           KEW +LK DR+ LR  +F TG +++ L  
Sbjct: 80  DAANERYLRRIFTEDVVRDLLGSSTALSEFEKEWERLKTDREVLRI-IFPTGNSRVVLPC 138

Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           N+ R+IWNA++IF V     +DLSP +++ GVE L+ +  ++  ++   + A
Sbjct: 139 NLLRMIWNAQKIFHVNTRAPTDLSPLRVIHGVEELVKKLVIVPGEDRLSIQA 190

[121][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
           RepID=Q6E233_CAERE
          Length = 611

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 34/100 (34%), Positives = 59/100 (59%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           S+  + +I    D   L+  EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 127 SEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 185

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           F V      +LSP  ++ GV  L  +  +++ +++    A
Sbjct: 186 FKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 225

[122][TOP]
>UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Suberites fuscus RepID=Q2N162_9METZ
          Length = 260

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 35/96 (36%), Positives = 56/96 (58%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + D+ +       L  EW QL +DR+ +R  VF TG +K+ L VN+ RLIWNA++IF V 
Sbjct: 87  VRDLLTSSTAQTELESEWQQLCQDREIVR-SVFPTGNSKIVLPVNLNRLIWNAQKIFHVD 145

Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
              ++DL P K+V GV  L ++  ++  +++    A
Sbjct: 146 IRGQTDLHPLKVVEGVRDLSNKLIIVQGEDELSKQA 181

[123][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
            RepID=Q25203_9CAEN
          Length = 1343

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 34/95 (35%), Positives = 54/95 (56%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  +  +     + E L  EW QL  DRD  R +VF TG+A++ L  N++R+IWNA++
Sbjct: 848  LKEDVIKGLRGEHRLIEELESEWLQLISDRDSAR-QVFSTGDARIVLPCNLQRMIWNAQK 906

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF + +   SDL P  +V GV  L  R  ++  ++
Sbjct: 907  IFRIDKRKPSDLDPINVVSGVRDLCQRLTIVEGED 941

[124][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           JU727 RepID=A9QMQ9_9PELO
          Length = 620

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 34/100 (34%), Positives = 59/100 (59%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           S+  + +I    D   L+  EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 144 SEDVVREIQESTDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 202

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           F V      +LSP  ++ GV  L  +  +++ +++    A
Sbjct: 203 FKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 242

[125][TOP]
>UniRef100_Q2PYP9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix sp.
           GE13 RepID=Q2PYP9_9FUNG
          Length = 813

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
 Frame = +2

Query: 2   LTEPDLHLQESSNSPYLSQAALNDIHSGGDVT-ELLAKEWAQLKKDRDFLRHEVFKTGEA 178
           LT+ D  L+  +    L  + L D+    +V  E L +E+  L++DR   R  +FK G++
Sbjct: 638 LTDKDFGLKPKT----LQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDS 693

Query: 179 KLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
             PL VN+ RLIWNA+ IF + +   SDL P  I    + LL R  V+  D+    +A
Sbjct: 694 SWPLPVNVRRLIWNAQNIFSINKRKESDLHPLYICEKRDELLKRLVVVRGDDKLSKEA 751

[126][TOP]
>UniRef100_A1YIC6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix
            frontalis RepID=A1YIC6_NEOFR
          Length = 1004

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
 Frame = +2

Query: 2    LTEPDLHLQESSNSPYLSQAALNDIHSGGDVT-ELLAKEWAQLKKDRDFLRHEVFKTGEA 178
            LT+ D  L+  +    L  + L D+    +V  E L +E+  L++DR   R  +FK G++
Sbjct: 824  LTDKDFGLKPKT----LQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDS 879

Query: 179  KLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
              PL VN+ RLIWNA+ IF + +   SDL P  I    + LL R  V+  D+    +A
Sbjct: 880  SWPLPVNVRRLIWNAQNIFSINKRKESDLHPLYICEKRDELLKRLVVVRGDDKLSKEA 937

[127][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 32/101 (31%), Positives = 60/101 (59%)
 Frame = +2

Query: 47   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
            ++    +  + +     + L KE+ ++K DR  LR+E+  +GEA  PL VN+ RLI NA+
Sbjct: 919  WMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQ 978

Query: 227  RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVD 349
            ++F++     SDL+P+ +V  +E L+ R +++ + +  E D
Sbjct: 979  KLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTEDD 1019

[128][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            briggsae RepID=RPB1_CAEBR
          Length = 1853

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 34/100 (34%), Positives = 59/100 (59%)
 Frame = +2

Query: 53   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
            S+  + +I    D   L+  EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 929  SEDVVREIQEAQDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 987

Query: 233  FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            F V      +LSP  ++ GV  L  +  +++ +++    A
Sbjct: 988  FKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 1027

[129][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
            RepID=Q9XZU9_DROSU
          Length = 1889

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
 Frame = +2

Query: 35   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +      + ++    +  + L  EW  L  DRD LR  +F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
            +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016

[130][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
            RepID=Q9XZS1_DROGU
          Length = 1889

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
 Frame = +2

Query: 35   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            SN  Y+ +      + ++    +  + L  EW  L  DRD LR  +F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325
            +R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016

[131][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
           RepID=Q6E231_CAEBE
          Length = 596

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 34/102 (33%), Positives = 60/102 (58%)
 Frame = +2

Query: 47  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
           + S+  + +I    D   L+  EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA+
Sbjct: 117 HYSEDVVREIQESLDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQ 175

Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           +IF V      +LSP  ++ GV  L  +  +++ +++    A
Sbjct: 176 KIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 217

[132][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            elegans RepID=RPB1_CAEEL
          Length = 1852

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 34/100 (34%), Positives = 59/100 (59%)
 Frame = +2

Query: 53   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
            S+  + +I    D   L+  EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 925  SEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 983

Query: 233  FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            F V      +LSP  ++ GV  L  +  +++ +++    A
Sbjct: 984  FKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQA 1023

[133][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B0A92
          Length = 1714

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 31/95 (32%), Positives = 57/95 (60%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ +   V   L +E+ ++K+DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 912  LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 970

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     +DLSP ++V G   L  +  ++  D+
Sbjct: 971  IFRINTRTPTDLSPLRVVEGTHELSKKLVIVNGDD 1005

[134][TOP]
>UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum
           RepID=Q1ACV3_ACEPM
          Length = 240

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 32/109 (29%), Positives = 64/109 (58%)
 Frame = +2

Query: 26  QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
           Q++ N  Y+ Q  ++++ +  ++ ++   E  +L+ DR  L  E+  +G++  P+ VN++
Sbjct: 73  QDNWNPNYMLQEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPMPVNLK 132

Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           RLIWNA++ F V     SD+ P ++V  ++ L  R +V+  D+   V+A
Sbjct: 133 RLIWNAQKTFKVDPRRPSDMHPMEVVEAIDKLQERLKVVPGDDALSVEA 181

[135][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
           RepID=Q6E227_CAEJA
          Length = 608

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 34/100 (34%), Positives = 58/100 (58%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           S+  + +I    D   L+  EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 127 SEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 185

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           F V      +LSP  ++ GV  L  +  ++  +++    A
Sbjct: 186 FKVDLRKPVNLSPLHVINGVRELSKKLIIVCGNDEISKQA 225

[136][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           SB341 RepID=Q6E225_9PELO
          Length = 622

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 37/113 (32%), Positives = 63/113 (55%)
 Frame = +2

Query: 14  DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
           DL  + +  S Y  +  +  +    D  E +  EW QL++DR  LR ++F TG+AK+ L 
Sbjct: 132 DLADERTLKSCY-EEHVVRQLKEAPDAIEKVEAEWNQLEEDRRLLR-KIFPTGDAKVVLP 189

Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            N++RLIWNA++IF V     ++LSP  ++ GV  +  +  +++  +D    A
Sbjct: 190 CNLQRLIWNAQKIFKVDLRKPTNLSPLHVIEGVREVSKKLIIVSGSDDISKQA 242

[137][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
          Length = 254

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 32/111 (28%), Positives = 62/111 (55%)
 Frame = +2

Query: 20  HLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 199
           +  E     ++S+  ++++    +      +E+A+L  DR  LR E+FK G +K+ L  N
Sbjct: 81  YTNERQLKKFISEDVIHELGVNPEAQAKFEEEFARLHDDRMILR-EIFKDGNSKVVLPCN 139

Query: 200 IERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           + R+IWNA++ F +   + SDL+P K++ GVE L  +  ++  ++    +A
Sbjct: 140 LSRMIWNAQKTFKINTRNNSDLNPLKVIEGVEELCKKLVIVDGEDSISKEA 190

[138][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
            RepID=Q17085_ARTSA
          Length = 1341

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
 Frame = +2

Query: 29   ESSNSPYLSQAALNDIHSG----GDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196
            + SN   L +    D+        +V   + KEW  L KDR+ LR +VF +GE K+ L  
Sbjct: 835  DPSNERQLRKTFTEDVTKSLLGDSEVITEIEKEWEALVKDREALR-KVFPSGENKVVLPC 893

Query: 197  NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
            N++R+IWNA++ F + +   SDLSP ++++GV  LL +  V+ + ED
Sbjct: 894  NLQRMIWNAQKTFHINKRMPSDLSPLRVIQGVRDLL-KNCVIVNGED 939

[139][TOP]
>UniRef100_O02454 RNA polymerase II largest subunit (Fragment) n=1 Tax=Narceus
           americanus RepID=O02454_9MYRI
          Length = 227

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 35/79 (44%), Positives = 50/79 (63%)
 Frame = +2

Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283
           L KEW  L++DRD LR  +F  G+ K+ L  N++R+IWNA++IF +     +DLSP K++
Sbjct: 96  LEKEWEALRRDRDVLR-SIFPKGDNKVVLPCNLQRMIWNAQKIFHINLRAPTDLSPLKVI 154

Query: 284 RGVELLLHRTRVLTSDEDA 340
            GV   L R  V+   EDA
Sbjct: 155 DGVR-ELSRKLVIVPGEDA 172

[140][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
          Length = 1943

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 34/103 (33%), Positives = 61/103 (59%)
 Frame = +2

Query: 29   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
            E S     ++  + ++    +  + +  EW QL++DR  LR ++F  G+AK+ L  N++R
Sbjct: 992  EKSLRKLYTENVVRELQGSAEALKEVEAEWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQR 1050

Query: 209  LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
            +IWNA++IF V     +DL+P +++ GV+  L +  V+ S ED
Sbjct: 1051 MIWNAQKIFRVELRKPTDLNPLRVIEGVK-ELSKKLVIVSGED 1092

[141][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 32/79 (40%), Positives = 51/79 (64%)
 Frame = +2

Query: 98   ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 277
            ++L  E+ QL +DR+ +R+ +F+ G++  PL  NI RLIWNA+ +  +  N  S+L P +
Sbjct: 872  KVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEE 931

Query: 278  IVRGVELLLHRTRVLTSDE 334
            IVR V  LL R  V+T ++
Sbjct: 932  IVRDVNDLLSRCIVITGED 950

[142][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
            RepID=Q0D054_ASPTN
          Length = 1742

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 40/113 (35%), Positives = 64/113 (56%)
 Frame = +2

Query: 14   DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
            DL   E S  P + + A N+I    +V   L +EW QL KDR FLR  V K  E  + L 
Sbjct: 921  DLMDPERSLGPEILEQA-NEIAGDVEVQRYLDEEWEQLLKDRAFLR-TVAKEDEEMMQLP 978

Query: 194  VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            +N++R++  A+  F +R+   SDL P++++  V+ LL R +++  D+   V+A
Sbjct: 979  INVQRILETARSTFRIREGTISDLHPAEVIPQVQSLLDRLKIVRGDDIISVEA 1031

[143][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
            RepID=UPI0000546D90
          Length = 1972

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 30/95 (31%), Positives = 60/95 (63%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ +   V   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 931  LQEDVVKDVMTNAHVQSSLEREFEKMREDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 989

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     +DL+P+++V GV+ L  +  ++  D+
Sbjct: 990  IFRINPRAPTDLNPARVVDGVKELSKKLVIVNGDD 1024

[144][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E658E
          Length = 1628

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 31/95 (32%), Positives = 57/95 (60%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ +   V   L +E+ ++K+DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 932  LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 990

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     +DLSP ++V G   L  +  ++  D+
Sbjct: 991  IFRINTRTPTDLSPLRVVEGTHDLSKKLVIVNGDD 1025

[145][TOP]
>UniRef100_Q2TUN9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thuja occidentalis
            RepID=Q2TUN9_THUOC
          Length = 1013

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 33/109 (30%), Positives = 61/109 (55%)
 Frame = +2

Query: 26   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
            QE+ N  Y+    ++D+ +  +   +   E  +L+ DR  L  E+  +G+   P+ VN++
Sbjct: 843  QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVNLK 902

Query: 206  RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            RLIWNA++ F +    RSD+ P +IV  ++ L  R +V+  D+   ++A
Sbjct: 903  RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLISIEA 951

[146][TOP]
>UniRef100_Q1ACT1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Quercus
           coccinea RepID=Q1ACT1_9ROSI
          Length = 240

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 36/108 (33%), Positives = 59/108 (54%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
           E  N  Y+ Q  + D+ +  +   +   E  +L+ DR  L  E+  TG+   PL VN++R
Sbjct: 74  EHWNPDYMMQEHIEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPLPVNLKR 133

Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           LIWNA++IF +     SD+ P +IV  V+ L  R +V+  ++   V+A
Sbjct: 134 LIWNAQKIFKIDNRRHSDMHPMEIVEAVDKLQERLKVVPGEDLLSVEA 181

[147][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9TK89_PHYPA
          Length = 1646

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 35/88 (39%), Positives = 52/88 (59%)
 Frame = +2

Query: 89   DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 268
            D   +   E ++L+ DR  +  E+  TGEA  PL VN++RLIWNA++IF V     SD+ 
Sbjct: 930  DYINVFDAEVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQKIFKVDFRKPSDMH 989

Query: 269  PSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            P +IV  V+ L  R RV+  D+   ++A
Sbjct: 990  PMEIVEAVDKLQERLRVVPGDDQISMEA 1017

[148][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
           RepID=Q6E232_9PELO
          Length = 601

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 32/100 (32%), Positives = 57/100 (57%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + ++    +  E +  EWAQL +DR  LR ++F  G+AK+ L  N++RL+WNA++I
Sbjct: 127 TEDVIRELQESSEAIEKIESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKI 185

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           F V      +LSP  ++ GV  L  +  ++  ++D    A
Sbjct: 186 FKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDDISKQA 225

[149][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
           nematode RepID=O01376_9BILA
          Length = 633

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 32/100 (32%), Positives = 57/100 (57%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + ++    +  E +  EWAQL +DR  LR ++F  G+AK+ L  N++RL+WNA++I
Sbjct: 140 TEDVIRELQESSEAIEKIESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKI 198

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           F V      +LSP  ++ GV  L  +  ++  ++D    A
Sbjct: 199 FKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDDISKQA 238

[150][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
           EM434 RepID=A9QMQ7_9BILA
          Length = 398

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 36/108 (33%), Positives = 64/108 (59%)
 Frame = +2

Query: 14  DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
           DL  ++S    Y ++   +++    +  +    EW QL++DR  LR ++F +G+AK+ L 
Sbjct: 132 DLSDEKSLRKMY-TEDVQHELQGSSEALKEAEDEWNQLEEDRRLLR-KIFPSGDAKIVLP 189

Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
            N++RLIWNA++IF V     +DL+P +++ GV   L +  ++ S ED
Sbjct: 190 CNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED 236

[151][TOP]
>UniRef100_A1YIC2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coelomomyces
            stegomyiae RepID=A1YIC2_9FUNG
          Length = 1014

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 34/88 (38%), Positives = 56/88 (63%)
 Frame = +2

Query: 89   DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 268
            DV +LL +E++QLK DR  LR ++F TG+A  PL +N++R+IWNA+ +F + +   S+L 
Sbjct: 861  DVQKLLDEEFSQLKDDRACLR-KIFLTGDANWPLPMNLKRIIWNAQNLFKIDKQRPSNLH 919

Query: 269  PSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            P  +V  V  L  +  V+  D+   ++A
Sbjct: 920  PDYVVNQVRGLCDKLTVIRGDDKISLEA 947

[152][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 33/102 (32%), Positives = 57/102 (55%)
 Frame = +2

Query: 47   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
            YLS     D+ +  ++  +   E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA+
Sbjct: 929  YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988

Query: 227  RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            + F +     SD+ P +IV  ++ L  R +V+  D+D  ++A
Sbjct: 989  KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA 1030

[153][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q5WMZ9_ORYSJ
          Length = 1741

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 33/102 (32%), Positives = 57/102 (55%)
 Frame = +2

Query: 47   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
            YLS     D+ +  ++  +   E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA+
Sbjct: 876  YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 935

Query: 227  RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            + F +     SD+ P +IV  ++ L  R +V+  D+D  ++A
Sbjct: 936  KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA 977

[154][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q0DKN9_ORYSJ
          Length = 1834

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 33/102 (32%), Positives = 57/102 (55%)
 Frame = +2

Query: 47   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
            YLS     D+ +  ++  +   E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA+
Sbjct: 929  YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988

Query: 227  RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            + F +     SD+ P +IV  ++ L  R +V+  D+D  ++A
Sbjct: 989  KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA 1030

[155][TOP]
>UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
            RepID=Q2PYS1_9FUNG
          Length = 1015

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 33/96 (34%), Positives = 54/96 (56%)
 Frame = +2

Query: 65   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
            L D+        +L +E+ QL  DR  LR  +F +G+   PL  N++RL+WNA+ IF + 
Sbjct: 858  LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWNAQNIFHID 917

Query: 245  QNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            +   S+L P +I+ GV+LL+ R  V+   +    +A
Sbjct: 918  KRKPSNLHPLQIIEGVKLLIDRLVVVRGSDKLSNEA 953

[156][TOP]
>UniRef100_C3U0B8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gymnoascus reesii
           RepID=C3U0B8_9EURO
          Length = 618

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 41/113 (36%), Positives = 64/113 (56%)
 Frame = +2

Query: 14  DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
           DL   ES+ SP + + A  +I    +V + L +EW QL  DR FLR  V K  E K+ L 
Sbjct: 447 DLMDPESTLSPDILEQA-GEIAGDMEVQKYLDEEWEQLVADRKFLR-SVAKEDEEKMQLP 504

Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           +N++R++ +AK  F +R    SDL P++++  V+ LL R  V+  D+    +A
Sbjct: 505 INVQRILESAKTAFRIRDGTISDLHPAEVIPQVQALLDRLLVVRGDDPISKEA 557

[157][TOP]
>UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus
            RepID=A1YIB9_ALLMA
          Length = 1008

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 33/88 (37%), Positives = 55/88 (62%)
 Frame = +2

Query: 89   DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 268
            +V +LL +E+ QL++DR+ LRH +F  G+A+ PL  NI+R+IWNA+ +F + +   S+L 
Sbjct: 855  EVQQLLDQEYRQLEEDRERLRH-IFPRGDARWPLPGNIQRIIWNAQNLFKIDKTKPSNLH 913

Query: 269  PSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            P  +V  V  L  +  V+   +   V+A
Sbjct: 914  PEYVVNEVRKLCDKLMVIPGTDKISVEA 941

[158][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
            thaliana RepID=RPB1_ARATH
          Length = 1840

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 37/108 (34%), Positives = 60/108 (55%)
 Frame = +2

Query: 29   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
            E+ N  YLS   L D+    ++ ++   E+++L+ DR  L  E+   G++  PL VNI+R
Sbjct: 924  ENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKR 983

Query: 209  LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
             IWNA++ F +     SD+ P +IV  V+ L  R  V+  D+   V+A
Sbjct: 984  HIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEA 1031

[159][TOP]
>UniRef100_Q9BNJ6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Pachymerium
           ferrugineum RepID=Q9BNJ6_9MYRI
          Length = 238

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 31/90 (34%), Positives = 53/90 (58%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + D+     +   L KEW  LKKDR+ LR  VF  G++K+ L  N+ R+IWNA++IF + 
Sbjct: 94  VKDLMGSSHIVTQLEKEWETLKKDREVLR-SVFPKGDSKVVLPCNLPRMIWNAQKIFHIN 152

Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
               +DL+P +++ GV  L  +  ++  ++
Sbjct: 153 TRTPTDLTPLRVLDGVRELSSKIIIVPGED 182

[160][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
            RepID=C3ZES3_BRAFL
          Length = 1934

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 37/103 (35%), Positives = 58/103 (56%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + +I S   +   +  E+ QL+ DRD LR  V +TG+AK+ L  N+ R+IWNA++
Sbjct: 930  LQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQK 988

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIA 358
            IF V     +DL P K+V GV  L  +  ++  D+   + A A
Sbjct: 989  IFHVNTRAPTDLHPIKVVEGVRDLSRKLVIVKGDDPISIQAQA 1031

[161][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           regenfussi RepID=A9QMG9_9BILA
          Length = 620

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 29/74 (39%), Positives = 51/74 (68%)
 Frame = +2

Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292
           EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA+++F V    +++L+P +++ GV
Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQKVFHVETRKQTELNPLRVIEGV 214

Query: 293 ELLLHRTRVLTSDE 334
             L  +  ++  D+
Sbjct: 215 RELSKKLVIVGGDD 228

[162][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
          Length = 1935

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 899  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 957

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 958  IFHINPRLPSDLHPIKVVEGVKKLSKKLVIVNGDD 992

[163][TOP]
>UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
            RepID=A1YIB6_9FUNG
          Length = 1018

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 33/96 (34%), Positives = 53/96 (55%)
 Frame = +2

Query: 65   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
            L D+        +L +E+ QL  DR  LR  +F +G+   PL  N+ RL+WNA+ IF + 
Sbjct: 856  LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWNAQNIFHID 915

Query: 245  QNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            +   S+L P +I+ GV+LL+ R  V+   +    +A
Sbjct: 916  KRKPSNLHPLQIIEGVKLLIDRLIVVRGSDKLSNEA 951

[164][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
            RepID=UPI000186501C
          Length = 1956

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 37/103 (35%), Positives = 58/103 (56%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + +I S   +   +  E+ QL+ DRD LR  V +TG+AK+ L  N+ R+IWNA++
Sbjct: 930  LQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQK 988

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIA 358
            IF V     +DL P K+V GV  L  +  ++  D+   + A A
Sbjct: 989  IFHVNTRAPTDLHPIKVVEGVRDLSKKLVIVKGDDPISIQAQA 1031

[165][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase II subunit A) (DNA-directed RNA polymerase III
            largest subunit) n=1 Tax=Equus caballus
            RepID=UPI0001796DD3
          Length = 1834

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[166][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
            isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
          Length = 1970

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[167][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
          Length = 1913

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[168][TOP]
>UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Macaca mulatta RepID=UPI0000D9E16B
          Length = 1193

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[169][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2C
          Length = 1888

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[170][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2B
          Length = 1892

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 936  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 995  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029

[171][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2A
          Length = 1896

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 936  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 995  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029

[172][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B29
          Length = 1891

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 903  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 961

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 962  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 996

[173][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B28
          Length = 1908

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 920  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 979  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1013

[174][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 18 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B27
          Length = 1831

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[175][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 17 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B26
          Length = 1684

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 924  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 983  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1017

[176][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 16 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B25
          Length = 1752

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 924  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 983  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1017

[177][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B24
          Length = 1924

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 936  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 995  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029

[178][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 14 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B23
          Length = 1653

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 907  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 966  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1000

[179][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 13 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B22
          Length = 1722

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 907  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 966  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1000

[180][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B21
          Length = 1922

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[181][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B20
          Length = 1923

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 935  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 993

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 994  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1028

[182][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 10 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1F
          Length = 1840

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 930  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 989  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1023

[183][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 9 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1E
          Length = 1851

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 930  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 989  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1023

[184][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1D
          Length = 1764

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 952  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 1010

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 1011 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1045

[185][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 5 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B19
          Length = 1693

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 920  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 979  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1013

[186][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B17
          Length = 1788

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[187][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B16
          Length = 1922

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[188][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25C
          Length = 1968

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 936  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 995  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029

[189][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25B
          Length = 1932

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[190][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
          Length = 1970

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[191][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
            familiaris RepID=UPI0001951285
          Length = 1969

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[192][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
          Length = 1966

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[193][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 38/104 (36%), Positives = 55/104 (52%)
 Frame = +2

Query: 47   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
            ++    +  I    D   LL  E+ QL  DR  LR  +  T E   PL VN++RLIWNA+
Sbjct: 920  FMDADIVQKIRDSADDRILLEAEFKQLMNDRTALRESI-PTDENTWPLPVNLKRLIWNAQ 978

Query: 227  RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIA 358
            +IF +     SDL P  I++GV LL  +  V+  ++   V+A A
Sbjct: 979  KIFHIDVRKPSDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEAQA 1022

[194][TOP]
>UniRef100_Q9NJJ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scolopendra
           polymorpha RepID=Q9NJJ7_SCOPO
          Length = 734

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 29/90 (32%), Positives = 56/90 (62%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + ++    ++   L KEW  LK+DR+ LR +VF  G++K+ L  N+ R+IWNA++IF + 
Sbjct: 590 VKELMGSANIVGELEKEWETLKRDRETLR-QVFPKGDSKVVLPCNLPRMIWNAQKIFHIN 648

Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
               +DL+P +++ GV  L+ +  ++  ++
Sbjct: 649 TRVPTDLNPFRVIEGVRELVKKIVIVQGED 678

[195][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
            RepID=Q7Q3C6_ANOGA
          Length = 1878

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 29/94 (30%), Positives = 58/94 (61%)
 Frame = +2

Query: 53   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
            ++  + ++     V + +  E+ QL +DR+ LR ++F  G++K+ L  N++R+IWN ++I
Sbjct: 925  NEDVIKELTETSSVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983

Query: 233  FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            F + +   +DLSP K+++GV  LL R  ++   +
Sbjct: 984  FHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTD 1017

[196][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
           inermiformis RepID=A9QMR5_9BILA
          Length = 524

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 33/104 (31%), Positives = 62/104 (59%)
 Frame = +2

Query: 26  QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
           +++ N  Y +   + D+    +  + +  EW QL++DR  LR ++F  G++K+ L  N++
Sbjct: 126 EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 183

Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           RLIWNA++IF V   ++S L+P +++ GV  +  +  V+   ED
Sbjct: 184 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED 226

[197][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
           redivivus RepID=A9QMH0_PANRE
          Length = 636

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
 Frame = +2

Query: 2   LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172
           L E   HL    +   S   S   + ++ +  +V E L +EW +L +DR  LR E+F  G
Sbjct: 125 LFEKKYHLNIHDDKEMSRLYSVDVIRELRNDPEVQEKLEQEWRKLCEDRAMLR-EIFPKG 183

Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           +AK  L  N++RLIWNA++IF V     ++L P+ I+ GV  L  R  +++  +
Sbjct: 184 DAKTVLPCNLQRLIWNAQKIFHVDLRKPTELHPATIIEGVRKLGDRLVIVSGTD 237

[198][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
           RepID=A9QMF4_9BILA
          Length = 597

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 33/104 (31%), Positives = 62/104 (59%)
 Frame = +2

Query: 26  QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
           +++ N  Y +   + D+    +  + +  EW QL++DR  LR ++F  G++K+ L  N++
Sbjct: 94  EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 151

Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           RLIWNA++IF V   ++S L+P +++ GV  +  +  V+   ED
Sbjct: 152 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED 194

[199][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
           RepID=A9QMF3_9BILA
          Length = 626

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 30/94 (31%), Positives = 57/94 (60%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           S+  + D+    D  + +  EW QL++DR  LR ++F  G++K+ L  N++RLIWNA++I
Sbjct: 140 SEEVVRDLQGSTDALKEVEDEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKI 198

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           F V     + L+P +++ GV  +  +  +++ D+
Sbjct: 199 FKVETRKVTALNPLRVIEGVRNVSKKLVIVSGDD 232

[200][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
           RepID=A9QMF2_9PELO
          Length = 629

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 36/107 (33%), Positives = 62/107 (57%)
 Frame = +2

Query: 14  DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
           DL  + S    Y S+  + D+       + + +EW QL++DR  LR ++F  GE+K+ L 
Sbjct: 128 DLSDERSLRRVY-SEDVVRDLLGSSSALKEVEEEWQQLEEDRRLLR-KIFPKGESKVVLP 185

Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            N++RLIWNA++IF V     + L+P ++V+GV  L  +  ++  D+
Sbjct: 186 CNLQRLIWNAQKIFKVETRKVTALNPLRVVQGVRDLSKKLIIVMGDD 232

[201][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
          Length = 1970

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[202][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
            RepID=Q1E2G9_COCIM
          Length = 1750

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 41/107 (38%), Positives = 62/107 (57%)
 Frame = +2

Query: 14   DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
            DL   E+S SP L + A  +I    +V   L +EW QL+KDR FLR  V K  E  + L 
Sbjct: 923  DLMDPENSLSPELLEQA-TEITGDMEVQRYLDEEWEQLQKDRAFLR-SVAKEDEEMMQLP 980

Query: 194  VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +N++R++ +AK  F +R+   SDL P+ ++  V+ LL R  V+  D+
Sbjct: 981  INVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRLVVVRGDD 1027

[203][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
            SOWgp RepID=C5PAJ4_COCP7
          Length = 1746

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 41/107 (38%), Positives = 62/107 (57%)
 Frame = +2

Query: 14   DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
            DL   E+S SP L + A  +I    +V   L +EW QL+KDR FLR  V K  E  + L 
Sbjct: 923  DLMDPENSLSPELLEQA-TEITGDMEVQRYLDEEWEQLQKDRAFLR-SVAKEDEEMMQLP 980

Query: 194  VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +N++R++ +AK  F +R+   SDL P+ ++  V+ LL R  V+  D+
Sbjct: 981  INVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRLVVVRGDD 1027

[204][TOP]
>UniRef100_C3U0C3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xeromyces bisporus
           RepID=C3U0C3_9EURO
          Length = 618

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 34/95 (35%), Positives = 57/95 (60%)
 Frame = +2

Query: 68  NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 247
           N+I    +V + L +EW QL KDR+FLR  V K  E  + L +N++R++ +AK  F +R+
Sbjct: 464 NEIKGDMEVQKYLDEEWEQLVKDREFLR-SVAKEDEEMMQLPINVQRILESAKTTFRIRE 522

Query: 248 NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
              SDL P++++  V  LL R  ++  ++D   +A
Sbjct: 523 GTISDLHPAEVIPQVRALLDRLVIVRGNDDISREA 557

[205][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
            RepID=A1YIB1_9BASI
          Length = 1013

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 38/93 (40%), Positives = 52/93 (55%)
 Frame = +2

Query: 56   QAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIF 235
            Q  L+D  S   +  +L KEW QL KDR  LR  +F  G  + PL VNI R+I NA++IF
Sbjct: 850  QVGLDD--SSAALQSVLDKEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQIF 907

Query: 236  DVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
             +     SDL P  I++ V  L +R  V+  D+
Sbjct: 908  HIDFRKPSDLPPPDIIQMVNDLCNRLIVVRGDD 940

[206][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
            RepID=RPB1_MOUSE
          Length = 1970

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[207][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
            RepID=RPB1_HUMAN
          Length = 1970

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027

[208][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
            RepID=Q4SF83_TETNG
          Length = 1745

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 29/81 (35%), Positives = 52/81 (64%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ +   V   L +E+ ++K+DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 808  LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 866

Query: 230  IFDVRQNDRSDLSPSKIVRGV 292
            IF +     +DLSP ++V G+
Sbjct: 867  IFRINTRTPTDLSPLRVVEGI 887

[209][TOP]
>UniRef100_Q1ACS9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Ruschia herrei
           RepID=Q1ACS9_9CARY
          Length = 240

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 33/108 (30%), Positives = 61/108 (56%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
           E+    Y+ +  ++D+ +  +   +   E  +L+ DR  L  E+  TG+   PL VN++R
Sbjct: 74  ENWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPLPVNLKR 133

Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           L+WNA++ F V   ++SD+ P +IV  V+ L  R +V+  D+   ++A
Sbjct: 134 LLWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGDDFLSIEA 181

[210][TOP]
>UniRef100_Q9BNN0 RNA polymerase II largest subunit (Fragment) n=1 Tax=Geophilus
           vittatus RepID=Q9BNN0_9MYRI
          Length = 222

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 30/90 (33%), Positives = 54/90 (60%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + +++    +   L KEW  LKKDR+ LR  VF  G++K+ L  N+ R+IWNA++IF + 
Sbjct: 78  VKELNGSAHIVSQLDKEWEFLKKDRETLR-SVFPKGDSKVVLPCNLPRMIWNAQKIFHIN 136

Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
               +DL+P +++ GV  L  +  ++  ++
Sbjct: 137 TRTPTDLNPLRVLEGVRELSSKLIIVPGED 166

[211][TOP]
>UniRef100_Q9NJK2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polyxenus
           fasciculatus RepID=Q9NJK2_9MYRI
          Length = 751

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 33/96 (34%), Positives = 55/96 (57%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + D+         L +EW  LK DR+ LR  +F  G++K+ L  N++R+IWNA++I
Sbjct: 586 NEEIVKDLFGSASAVGELEREWXTLKLDREVLR-TIFPKGDSKVVLPCNLQRMIWNAQKI 644

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340
           F +     +DLSP +++ GV  L  +  V+   EDA
Sbjct: 645 FHINVRTPTDLSPLRVIEGVRDLTKKL-VIVVGEDA 679

[212][TOP]
>UniRef100_Q9BNN8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Craterostigmus
           tasmanianus RepID=Q9BNN8_9MYRI
          Length = 222

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 31/90 (34%), Positives = 54/90 (60%)
 Frame = +2

Query: 65  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
           + D+    +V   L  EW  L KDR+ LR  VF  G++K+ L  N++R+IWNA++IF + 
Sbjct: 78  VKDLLGSANVVGDLELEWESLCKDREVLR-TVFPKGDSKVVLPCNLQRMIWNAQKIFHIN 136

Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
               +DL+PS+++ GV  L  +  ++  ++
Sbjct: 137 IRSPTDLNPSRVIEGVRELSKKIIIVVGED 166

[213][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
           RepID=P91819_ZELPU
          Length = 629

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 35/93 (37%), Positives = 55/93 (59%)
 Frame = +2

Query: 59  AALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFD 238
           + + ++    D    +  EW QL++DR  LR ++F  G+AK+ L  N++RLIWNA +IF 
Sbjct: 139 SVVRELLGSADALREVESEWQQLEEDRRLLR-KIFPKGDAKVHLPCNLKRLIWNAHKIFH 197

Query: 239 VRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           V      DL+P ++V GV   L++  V+ S ED
Sbjct: 198 VDLKKPVDLNPLRVVEGVR-ELNKKLVIVSGED 229

[214][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
           RepID=A9QMR7_9BILA
          Length = 614

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 36/76 (47%), Positives = 48/76 (63%)
 Frame = +2

Query: 110 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 289
           +EW QL KDR  LR E+F  G+AK+ L  N++RLIWNA++IF V       LSP +++ G
Sbjct: 149 EEWKQLVKDRRTLR-EIFPKGDAKVVLPCNVQRLIWNAQKIFHVEIRRPVSLSPLRVIEG 207

Query: 290 VELLLHRTRVLTSDED 337
           V  L  R  V+ S ED
Sbjct: 208 VRELTARL-VIVSGED 222

[215][TOP]
>UniRef100_A9QMQ0 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
           RepID=A9QMQ0_PRIPA
          Length = 181

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 29/60 (48%), Positives = 43/60 (71%)
 Frame = +2

Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292
           EW QL++DR+ LR  +F  G+AK+ L  N++RLIWNA++IF V     +DLSP +++ GV
Sbjct: 57  EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 115

[216][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
           RepID=A9QMF6_PRIPA
          Length = 583

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 29/60 (48%), Positives = 43/60 (71%)
 Frame = +2

Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292
           EW QL++DR+ LR  +F  G+AK+ L  N++RLIWNA++IF V     +DLSP +++ GV
Sbjct: 127 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 185

[217][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48673
          Length = 1880

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 36/96 (37%), Positives = 59/96 (61%)
 Frame = +2

Query: 53   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
            ++  + D+ +   V   L KE+ QLK+DR+ LR ++F  GE+K+ L  N++R+IWNA++I
Sbjct: 929  NEKIVKDVVANAHVHLELEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQI 987

Query: 233  FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340
            F +     S+L PS ++ GV   L +  V+   EDA
Sbjct: 988  FHINTRLPSELHPSFVLEGVR-DLKKKLVIVKGEDA 1022

[218][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48672
          Length = 1913

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 36/96 (37%), Positives = 59/96 (61%)
 Frame = +2

Query: 53   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
            ++  + D+ +   V   L KE+ QLK+DR+ LR ++F  GE+K+ L  N++R+IWNA++I
Sbjct: 935  NEKIVKDVVANAHVHLELEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQI 993

Query: 233  FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340
            F +     S+L PS ++ GV   L +  V+   EDA
Sbjct: 994  FHINTRLPSELHPSFVLEGVR-DLKKKLVIVKGEDA 1028

[219][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48671
          Length = 1921

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 36/96 (37%), Positives = 59/96 (61%)
 Frame = +2

Query: 53   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
            ++  + D+ +   V   L KE+ QLK+DR+ LR ++F  GE+K+ L  N++R+IWNA++I
Sbjct: 935  NEKIVKDVVANAHVHLELEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQI 993

Query: 233  FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340
            F +     S+L PS ++ GV   L +  V+   EDA
Sbjct: 994  FHINTRLPSELHPSFVLEGVR-DLKKKLVIVKGEDA 1028

[220][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 8 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1C
          Length = 1719

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 31/90 (34%), Positives = 56/90 (62%)
 Frame = +2

Query: 65   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
            + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF + 
Sbjct: 933  VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991

Query: 245  QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
                SDL P K+V GV+ L  +  ++  D+
Sbjct: 992  PRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1021

[221][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 7 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1B
          Length = 1858

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 31/90 (34%), Positives = 56/90 (62%)
 Frame = +2

Query: 65   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244
            + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF + 
Sbjct: 933  VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991

Query: 245  QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
                SDL P K+V GV+ L  +  ++  D+
Sbjct: 992  PRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1021

[222][TOP]
>UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum
            RepID=B7SNX4_PEA
          Length = 1010

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 34/102 (33%), Positives = 56/102 (54%)
 Frame = +2

Query: 29   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
            E+    Y+ +  + D+ +  +   +   E  +L  DR  L  E+  TG++ LPL VN++R
Sbjct: 841  ENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKR 900

Query: 209  LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            LIWNA++ F V     SD+ P +IV  ++ L  R RV+  D+
Sbjct: 901  LIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVPGDD 942

[223][TOP]
>UniRef100_A9QMR2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis blumi
           RepID=A9QMR2_9BILA
          Length = 284

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
 Frame = +2

Query: 80  SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGE-AKLPLAVNIERLIWNAKRIFDVRQNDR 256
           S  D  + + +EWAQL++DR  LR ++F TG+  K+ L  N++RLIWNA++IF V     
Sbjct: 154 STSDALKKVEEEWAQLQEDRRLLR-KIFPTGDDRKVVLPCNLKRLIWNAQKIFHVETRKP 212

Query: 257 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           + LSP +++ G++ L  +  +++ D+     A
Sbjct: 213 TSLSPLRVIDGIKELSKKLIIVSGDDSISKQA 244

[224][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QMG0_OSCTI
          Length = 629

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 31/94 (32%), Positives = 57/94 (60%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           S+    ++ +  +  E +  EWAQL++DR  LR + F  G+ K+ L  N++RLIWNA++I
Sbjct: 144 SEDLYRELQNEPEAIEEIENEWAQLEEDRRLLR-KTFPNGDNKVVLPCNLQRLIWNAQKI 202

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           F V   + + L+P  ++RGV+ L  +  ++  ++
Sbjct: 203 FHVETREVTSLNPLAVIRGVKNLSDKLIIVGGED 236

[225][TOP]
>UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis
            RepID=Q2PYR1_9FUNG
          Length = 1022

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 37/109 (33%), Positives = 60/109 (55%)
 Frame = +2

Query: 26   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
            ++S  S  L  + L ++    +V  +L  E+ QLK+DR  LR  + + GEA+ P+ VN+ 
Sbjct: 852  EKSFPSGTLEFSVLKNVEGNDEVQRVLDDEYEQLKEDRHILRKFIARDGEARRPMPVNLP 911

Query: 206  RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            RLI NA++IF +     S+LSP +IV  +  L     VL  ++    +A
Sbjct: 912  RLIKNAQQIFHIDHRKPSNLSPVEIVEKIRKLADSLIVLRGNDSLTREA 960

[226][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
            RepID=C4JY44_UNCRE
          Length = 1747

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 39/107 (36%), Positives = 61/107 (57%)
 Frame = +2

Query: 14   DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
            DL   E S SP + + A  +I    +V   L +EW QL+KDR FLR    K  E  + L 
Sbjct: 875  DLMDPEKSLSPEILEQA-TEITGDIEVQRYLDEEWEQLQKDRVFLRSAA-KEDEEMMQLP 932

Query: 194  VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +N++R++ +AK  F +R+   SDL P++++  V+ LL R  V+  D+
Sbjct: 933  INVQRILESAKTTFRIREGTISDLHPAEVIPQVQALLERLVVVRGDD 979

[227][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1A
          Length = 1767

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 32/97 (32%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV--NIERLIWNA 223
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+P+ +  N+ R+IWNA
Sbjct: 920  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVPVVLPCNLLRMIWNA 978

Query: 224  KRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            ++IF +     SDL P K+V GV+ L  +  ++  D+
Sbjct: 979  QKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1015

[228][TOP]
>UniRef100_Q1ACT2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nepenthes
           ampullaria RepID=Q1ACT2_9CARY
          Length = 240

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 35/108 (32%), Positives = 57/108 (52%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
           E  N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   PL VN+ R
Sbjct: 74  EDWNPNYMLPDHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLTR 133

Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           LIWNA++ F +    RSD+ P +IV  V+ L  R +V+  D+   ++A
Sbjct: 134 LIWNAQKTFKIDLRRRSDMHPMEIVEAVDKLQERLKVVPGDDFLSIEA 181

[229][TOP]
>UniRef100_O02471 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scutigera
           coleoptrata RepID=O02471_SCUCO
          Length = 582

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 27/94 (28%), Positives = 55/94 (58%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + ++     +   L +EW  L+KDR+ LR  VF  G++K+ L  N++R+IWNA++I
Sbjct: 434 NEDVVKELMGSAHIVNELEREWTMLQKDREALR-SVFPKGDSKIVLPCNLQRMIWNAQKI 492

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           F +     +DL+P +++ G   L  +  ++  ++
Sbjct: 493 FHINLRSPTDLNPLRVIEGTRELSKKIIIVQGED 526

[230][TOP]
>UniRef100_Q0PQ08 DNA-directed RNA polymerase (Fragment) n=1 Tax=Echinoplaca
            strigulacea RepID=Q0PQ08_9LECA
          Length = 1017

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 36/95 (37%), Positives = 57/95 (60%)
 Frame = +2

Query: 68   NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 247
            N  ++  DV +L   E+ +L++ R +LR    +  E +LP+ VNI R+I  AKRIF +R 
Sbjct: 855  NIFNADSDVQDLFDAEFQKLEEARLYLRKT--RGSEDRLPIPVNITRIIETAKRIFKIRP 912

Query: 248  NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
             +RSDL P++++  V  LL R  V+  D+   V+A
Sbjct: 913  GNRSDLQPAEVIPAVIALLDRLIVVQGDDPISVEA 947

[231][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
            RepID=C5GKA7_AJEDR
          Length = 1746

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 42/117 (35%), Positives = 66/117 (56%)
 Frame = +2

Query: 14   DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
            DL   E + SP + + A  +I    +V + L +EW QL KDR F+R  V K  E  + L 
Sbjct: 923  DLMDPERTLSPNVLEQA-TEIAGDIEVQKYLDEEWEQLLKDRAFMR-SVAKEDEEMMQLP 980

Query: 194  VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364
            +N++R++ +AK IF +R+   SDL P++++  +  LL R  V+  D     D I+RE
Sbjct: 981  INVQRILESAKTIFRIREGAISDLHPAEVIPQIRALLDRLIVVRGD-----DVISRE 1032

[232][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF13
          Length = 1932

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/95 (32%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  ++
Sbjct: 993  IFHINPRLPSDLHPIKVVDGVKELSKKLVIVNGED 1027

[233][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF12
          Length = 1970

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/95 (32%), Positives = 58/95 (61%)
 Frame = +2

Query: 50   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 230  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            IF +     SDL P K+V GV+ L  +  ++  ++
Sbjct: 993  IFHINPRLPSDLHPIKVVDGVKELSKKLVIVNGED 1027

[234][TOP]
>UniRef100_Q71ET4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda
            RepID=Q71ET4_AMBTC
          Length = 1013

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 34/109 (31%), Positives = 60/109 (55%)
 Frame = +2

Query: 26   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
            QE+ +  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++
Sbjct: 843  QENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLK 902

Query: 206  RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            RLIWNA+++F V     SD+ P +IV  V+ L  R +V+  D+   ++A
Sbjct: 903  RLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEA 951

[235][TOP]
>UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe
           tomentosa RepID=Q1ACT8_9MAGN
          Length = 240

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 32/105 (30%), Positives = 57/105 (54%)
 Frame = +2

Query: 38  NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 217
           N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+  LP+ VN++RLIW
Sbjct: 77  NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136

Query: 218 NAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           NA++ F V     SD+ P +IV  ++ L  R +V+  ++   ++A
Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQERLKVVPGEDSLSIEA 181

[236][TOP]
>UniRef100_B7SNX1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana tabacum
            RepID=B7SNX1_TOBAC
          Length = 1010

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 34/105 (32%), Positives = 58/105 (55%)
 Frame = +2

Query: 38   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 217
            N  Y+   A+ D+ +  ++  +   E  +L+ DR  L  E+  TG+   PL VNI+RL+ 
Sbjct: 844  NPSYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVL 903

Query: 218  NAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            NA++ F +    RSD+ P +IV  V+ L  R +V+  D+   ++A
Sbjct: 904  NAQKTFKIDFRRRSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEA 948

[237][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
           RepID=A9QMF1_9PELO
          Length = 605

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/94 (32%), Positives = 55/94 (58%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           ++  + D+    +  + +  EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++I
Sbjct: 121 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 179

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           F V     S L+P K+V GV  L  +  ++  ++
Sbjct: 180 FKVETRKASSLNPLKVVSGVRELSKKLIIVCGED 213

[238][TOP]
>UniRef100_C3U0B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arachnomyces glareosus
            RepID=C3U0B2_9EURO
          Length = 993

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 39/113 (34%), Positives = 64/113 (56%)
 Frame = +2

Query: 14   DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
            DL   E S  P + + A  +I    +V + L +EW QL+KDR FLR  V    E  + L 
Sbjct: 822  DLMDPERSLGPEVLEQA-TEIAGDVEVQKYLDEEWEQLQKDRTFLR-SVANQDEEMMQLP 879

Query: 194  VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            +N++R++ +AK  F +R  + SDL PS+++  V+ LL R  V+  +++   +A
Sbjct: 880  INVQRILESAKTTFRIRDGNISDLHPSEVIPQVQALLDRLVVVRGNDEISREA 932

[239][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
           RepID=C0NEY2_AJECG
          Length = 1234

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 42/117 (35%), Positives = 66/117 (56%)
 Frame = +2

Query: 14  DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
           DL   + + SP + + A  +I    +V + L +EW QL KDR F+R  V K  E  + L 
Sbjct: 410 DLMDPDRTLSPNVLEQA-TEIAGDIEVQKYLDEEWEQLLKDRAFMR-SVAKEDEEMMQLP 467

Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364
           +N++R++ +AK IF +R+   SDL P++++  V  LL R  V+  D     D I+RE
Sbjct: 468 INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLERLVVVRGD-----DVISRE 519

[240][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
          Length = 1752

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 34/104 (32%), Positives = 58/104 (55%)
 Frame = +2

Query: 23   LQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202
            +++ S S Y+     N I +   V +LL +E+ QL  DR+ L   +F  G+A+ PL VN+
Sbjct: 908  MEDRSLSLYME----NSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNV 963

Query: 203  ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
            +R+I NA +IF +     +DL PS I+ G+  L+ +  +    +
Sbjct: 964  QRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSD 1007

[241][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=O01375_9BILA
          Length = 631

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 31/76 (40%), Positives = 50/76 (65%)
 Frame = +2

Query: 110 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 289
           +EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++IF +     +DLSP +++ G
Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 217

Query: 290 VELLLHRTRVLTSDED 337
           +   L +  V+ S ED
Sbjct: 218 IR-ELSKKLVIVSGED 232

[242][TOP]
>UniRef100_C0JPA2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichoplax adhaerens
           RepID=C0JPA2_TRIAD
          Length = 625

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 37/97 (38%), Positives = 55/97 (56%)
 Frame = +2

Query: 47  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
           YL    +  I +  +V E L  E+ QL KDR+ +R  + + G++++ L VN+ RLIWNA+
Sbjct: 460 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 518

Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           +IF V     SDL P K++  V   L R  V+   ED
Sbjct: 519 KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED 554

[243][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
            RepID=B3RM26_TRIAD
          Length = 1784

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 37/97 (38%), Positives = 55/97 (56%)
 Frame = +2

Query: 47   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226
            YL    +  I +  +V E L  E+ QL KDR+ +R  + + G++++ L VN+ RLIWNA+
Sbjct: 921  YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 979

Query: 227  RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
            +IF V     SDL P K++  V   L R  V+   ED
Sbjct: 980  KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED 1015

[244][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
           RepID=A9QMH1_9BILA
          Length = 616

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 32/95 (33%), Positives = 56/95 (58%)
 Frame = +2

Query: 53  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232
           + + + ++    +    +  EW QL++DR  LR ++F  GE+K+ L  N++RLIWNA++I
Sbjct: 144 ADSVVKELMGNAEAMREVEAEWQQLEEDRRLLR-KIFPKGESKVHLPCNLKRLIWNAQKI 202

Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337
           F V      DL+P +++ GV   L +  ++ S ED
Sbjct: 203 FHVDLRKTVDLNPVRVIEGVR-ELSKKLIIVSGED 236

[245][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
           RepID=A9QMG8_9BILA
          Length = 587

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 31/102 (30%), Positives = 58/102 (56%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
           E S     +   + D+ S  +  +    EW QL++DR  LR ++F  G++K+ L  N++R
Sbjct: 120 ERSLRRMFTDEVVRDLQSTPESLKEXESEWXQLEEDRXLLR-KIFPKGDSKVVLPCNLQR 178

Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334
           LIWNA++IF V     ++L+P +++ GV  L  +  ++  ++
Sbjct: 179 LIWNAQKIFHVETRKXTELNPLRVIEGVRDLSKKLVIVXGED 220

[246][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=A9QMG6_9BILA
          Length = 633

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 31/76 (40%), Positives = 50/76 (65%)
 Frame = +2

Query: 110 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 289
           +EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++IF +     +DLSP +++ G
Sbjct: 163 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 221

Query: 290 VELLLHRTRVLTSDED 337
           +   L +  V+ S ED
Sbjct: 222 IR-ELSKKLVIVSGED 236

[247][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CNZ4_ASPCL
          Length = 1765

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 40/113 (35%), Positives = 62/113 (54%)
 Frame = +2

Query: 14   DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193
            DL   E S  P + + A N+I    +V   L +EW QL KDR FLR  V K  +  + L 
Sbjct: 922  DLMDPERSLGPEVLEQA-NEIAGDVEVQRYLDEEWEQLLKDRAFLR-SVVKEDDEMMQLP 979

Query: 194  VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            +N++R++  A+  F +R+   SDL P+++V  V+ LL R  V+  D+    +A
Sbjct: 980  INVQRILETARSTFRIREGAISDLHPAEVVPQVQSLLDRLLVVRGDDPISHEA 1032

[248][TOP]
>UniRef100_Q71ET8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Welwitschia mirabilis
            RepID=Q71ET8_WELMI
          Length = 1013

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/109 (28%), Positives = 59/109 (54%)
 Frame = +2

Query: 26   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
            QE+ N  Y+    + D+ +  +   +   E   L+ DR  L  E+  +G+   PL VN++
Sbjct: 843  QENWNPGYMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGDNSWPLPVNLK 902

Query: 206  RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            RLIWNA+++F +     SD+ P +I+  ++ L  R +V+  ++   ++A
Sbjct: 903  RLIWNAQKLFKIDPRKASDMHPMEIIDAIDKLQERLKVVPGNDPLSIEA 951

[249][TOP]
>UniRef100_Q2TUN7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Podocarpus
            macrophyllus RepID=Q2TUN7_9CONI
          Length = 1013

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 32/109 (29%), Positives = 59/109 (54%)
 Frame = +2

Query: 26   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205
            QE+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  +G+   P+ VN++
Sbjct: 843  QENWNPIYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGTEIAPSGDNSCPMPVNLK 902

Query: 206  RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
            RLIWNA++ F +     SD+ P +IV  ++ L  R +V+  D+   ++A
Sbjct: 903  RLIWNAQKTFKIDPRKPSDMHPMEIVEAIDRLQERLKVVPGDDLISIEA 951

[250][TOP]
>UniRef100_Q1ACU1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
           scandens RepID=Q1ACU1_9MAGN
          Length = 240

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 34/108 (31%), Positives = 59/108 (54%)
 Frame = +2

Query: 29  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208
           E+ N  Y+    ++D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKR 133

Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+   ++A
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEA 181