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[1][TOP] >UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis RepID=O04142_PORYE Length = 1685 Score = 154 bits (388), Expect = 4e-36 Identities = 92/134 (68%), Positives = 97/134 (72%), Gaps = 6/134 (4%) Frame = +2 Query: 2 LTEPDLHLQESSNSPYLSQAALNDIHSG----GDVTELL--AKEWAQLKKDRDFLRHEVF 163 LTEPDLHLQ L G G V++ + A+E +L R F Sbjct: 829 LTEPDLHLQGVVQFSVLVAGGSQRYPLGRRRRGAVSQGVGTAEEGPRLPTPRGF------ 882 Query: 164 KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE 343 KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE Sbjct: 883 KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE 942 Query: 344 VDAIAREMLPPDGS 385 VDAIAREMLPPDGS Sbjct: 943 VDAIAREMLPPDGS 956 [2][TOP] >UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata RepID=Q9AXN0_9RHOD Length = 1746 Score = 92.8 bits (229), Expect = 1e-17 Identities = 51/133 (38%), Positives = 84/133 (63%), Gaps = 15/133 (11%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 D + E+ S YL+Q ++D+ + + + L E+AQ+K DRD L+ E+ ++ E+K PLA Sbjct: 893 DFGIGENRRS-YLAQEVIDDVRNDPQLIKALEDEFAQIKLDRDRLQREIIRSRESKWPLA 951 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT-------------SDE 334 VNI+RLIWN K +F++RQ+ SDL+P I++GV++LL R V+ D+ Sbjct: 952 VNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGDQ 1011 Query: 335 DAEVD--AIAREM 367 AEVD +++R++ Sbjct: 1012 VAEVDTNSVSRQL 1024 [3][TOP] >UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia uvarioides RepID=Q9AXN1_9FLOR Length = 1712 Score = 90.5 bits (223), Expect = 5e-17 Identities = 42/106 (39%), Positives = 70/106 (66%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 ++S PYL + I LL E+ ++++DRD LR+ + K+GEAK P+AVNI+ Sbjct: 821 KDSRGRPYLDWETCDSIRQDAQAHILLRNEFQRIREDRDLLRNFIAKSGEAKRPMAVNID 880 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAE 343 R+IWNAK+ ++R + SDL+P ++ +G+++LL RTRV+ +D + Sbjct: 881 RIIWNAKQAHNIRPDSVSDLTPVQVWKGIKMLLKRTRVVEIGDDQD 926 [4][TOP] >UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera RepID=O09451_9FLOR Length = 1732 Score = 87.4 bits (215), Expect = 4e-16 Identities = 43/113 (38%), Positives = 68/113 (60%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 Q+ PYL + + + L E+ Q++ DR LR + KTGE+K PLAVN++ Sbjct: 820 QDEKGRPYLDPNIVERVRQDAALHVELRLEFQQIEADRKLLRDYIIKTGESKRPLAVNVD 879 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364 R+IWNAK+ ++ + SDL P ++++GV +LL RTRVL ++A ++ A E Sbjct: 880 RVIWNAKQEHNIHADSVSDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALE 932 [5][TOP] >UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei RepID=B4YT42_AMPLE Length = 562 Score = 82.4 bits (202), Expect = 1e-14 Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL ++ L + GDV L +EW QL KDR+ LR ++F TGE+K+ L Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLSKDREALR-QIFPTGESKVVLPC 443 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ D+ Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD 489 [6][TOP] >UniRef100_B4YT35 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tenomerga cinerea RepID=B4YT35_9COLE Length = 553 Score = 82.0 bits (201), Expect = 2e-14 Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL ++ L + GDV L +EW QL KDR+ LR ++F TGE+K+ L Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLTKDREALR-QIFPTGESKVVLPC 443 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ D+ Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD 489 [7][TOP] >UniRef100_O02459 DNA-directed RNA polymerase (Fragment) n=1 Tax=Periplaneta americana RepID=O02459_PERAM Length = 468 Score = 79.3 bits (194), Expect = 1e-13 Identities = 39/106 (36%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + +N YL ++ L ++ GDV L KEW QL KDR+ LR ++F +GE+K+ L Sbjct: 308 DPTNERYLRRIFNEDILKELMGSGDVISELEKEWEQLVKDREALR-QIFPSGESKVVLPC 366 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ D+ Sbjct: 367 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVSDLLKKCIIVAGDD 412 [8][TOP] >UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D5670C Length = 2007 Score = 79.0 bits (193), Expect = 2e-13 Identities = 37/106 (34%), Positives = 68/106 (64%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL ++ + D+ G+V L EW QL+KDR+ LR ++F +GE+K+ L Sbjct: 919 DPSNERYLRRVFTEEVIKDLMGSGEVISELETEWEQLQKDREALR-QIFPSGESKVVLPC 977 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL++ ++ ++ Sbjct: 978 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLNKCVIVAGED 1023 [9][TOP] >UniRef100_O02475 DNA-directed RNA polymerase (Fragment) n=1 Tax=Triops longicaudatus RepID=O02475_9CRUS Length = 543 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL S+ D+ + G+V L EW QL +DRD LR ++F TGE K+ L Sbjct: 383 DPSNERYLRRIFSEDVTRDLMTSGEVISELDAEWEQLSRDRDALR-QIFPTGENKVVLPC 441 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++V+GV LL + V+ ++ Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLSPVRVVQGVRDLLEKCVVVKGED 487 [10][TOP] >UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179348F Length = 1862 Score = 77.8 bits (190), Expect = 4e-13 Identities = 36/95 (37%), Positives = 60/95 (63%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ L D+ D L KEW QL DRD LR E+F +GE+K+ L N++R+IWN ++I Sbjct: 928 TEDVLKDMMGSNDTVAELEKEWEQLTNDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 F + + +DL+P K+V GV+ LL + ++ +++ Sbjct: 987 FHINKRGPTDLNPIKVVNGVKKLLDKCVIVAGEDE 1021 [11][TOP] >UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E Length = 1422 Score = 77.8 bits (190), Expect = 4e-13 Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + +N YL + DI G+V L +EW QL KDR LR E+F +GE+K+ L Sbjct: 915 DPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAVLR-EIFPSGESKVVLPC 973 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP K+++GV+ LL + ++ D+ Sbjct: 974 NLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDD 1019 [12][TOP] >UniRef100_O02462 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pedetontus saltator RepID=O02462_9INSE Length = 722 Score = 77.8 bits (190), Expect = 4e-13 Identities = 37/106 (34%), Positives = 66/106 (62%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + +N YL ++ + ++ G+V L +EW QL+KDRD LR ++F G+ K L Sbjct: 562 DPTNERYLRRIFNEDIMKELMGSGEVISELEREWEQLQKDRDCLR-QIFPNGDNKTVLPC 620 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP K++RGV+ LL + ++ ++ Sbjct: 621 NLQRMIWNVQKIFHINKRATTDLSPLKVIRGVQHLLSKCIIVAGED 666 [13][TOP] >UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus opacus RepID=B4YT36_9COLE Length = 629 Score = 77.8 bits (190), Expect = 4e-13 Identities = 38/106 (35%), Positives = 66/106 (62%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIH----SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + D+ G+V L +EW QL+KDR+ LR ++F +GE+K+ L Sbjct: 452 DPSNERYLRRIFNEDVSRQLMGSGEVISELEREWEQLQKDREALR-QIFPSGESKVVLPC 510 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ D+ Sbjct: 511 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLKKCIIVAGDD 556 [14][TOP] >UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186D846 Length = 1885 Score = 77.4 bits (189), Expect = 5e-13 Identities = 37/106 (34%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 +++N YL ++ L ++ G+V L KEW QL+KDR+ LR ++F +GE K+ L Sbjct: 908 DATNERYLRRIFNENILKELMGSGEVISYLEKEWDQLQKDREALR-QIFPSGENKVVLPC 966 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP +++ GV LL + ++ ++ Sbjct: 967 NLQRMIWNVQKIFHINKRAPTDLSPLRVIEGVRDLLQKCVIVAGED 1012 [15][TOP] >UniRef100_Q9NJJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tomocerus sp. jcrjws1 RepID=Q9NJJ2_9HEXA Length = 543 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 4/118 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + +N YL ++ + DI G+V + KEW L+KDR LR ++F TGE K+ L Sbjct: 383 DPTNERYLRRVFTEDVMRDIMGSGEVISAIEKEWEALQKDRAVLR-QIFPTGENKVVLPC 441 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 370 N++R+IWN ++IF + + +DL+P +++ GVE LL + ++ ++ A A L Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLNPVRVIEGVEDLLKKCVIVVGEDRLSKQANANATL 499 [16][TOP] >UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense RepID=B4YT44_9CARA Length = 562 Score = 77.4 bits (189), Expect = 5e-13 Identities = 36/106 (33%), Positives = 66/106 (62%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL ++ + + GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 385 DPSNERYLRRIFNEEIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489 [17][TOP] >UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas RepID=Q23699_CRAGI Length = 1340 Score = 77.0 bits (188), Expect = 6e-13 Identities = 40/107 (37%), Positives = 62/107 (57%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 LS+ + D+ L +EW QL++DRD LR +F TG++K+ L N++R+IWNA++ Sbjct: 845 LSEEVIKDLMGDALAVSQLDREWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQK 903 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 370 IF + + +DL P K+V GVE L R V+ + + A A L Sbjct: 904 IFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGDRLSIQANANATL 950 [18][TOP] >UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus complex RepID=B4YT54_9CARA Length = 473 Score = 77.0 bits (188), Expect = 6e-13 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 296 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 354 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 355 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 400 [19][TOP] >UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion mandibulare RepID=B4YT49_9CARA Length = 562 Score = 77.0 bits (188), Expect = 6e-13 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489 [20][TOP] >UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion RepID=B4YT46_9CARA Length = 562 Score = 77.0 bits (188), Expect = 6e-13 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489 [21][TOP] >UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii RepID=B4YT45_9CARA Length = 227 Score = 77.0 bits (188), Expect = 6e-13 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154 [22][TOP] >UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus RepID=B4YT40_9COLE Length = 562 Score = 77.0 bits (188), Expect = 6e-13 Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI DV L +EW QL KDR+ LR ++F +GE+K+ L Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSADVISELEREWEQLVKDRETLR-QIFPSGESKVVLPC 443 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + ++DLSP ++++GV LL + ++ D+ Sbjct: 444 NLQRMIWNVQKIFHINKRAQTDLSPLRVIQGVRDLLQKCVIVAGDD 489 [23][TOP] >UniRef100_B4YT34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Sialis sp. ALW-2008 RepID=B4YT34_9NEOP Length = 555 Score = 77.0 bits (188), Expect = 6e-13 Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 5/107 (4%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 + N YL + +I SGGD+ + L KEW QL KDR+ LR ++F +G+ K+ L Sbjct: 385 DPGNERYLRRVFTEEIVRQLMASGGDLIQALEKEWDQLVKDREALR-QIFPSGDNKVVLP 443 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + +DLSP +++ GV LL R ++ D+ Sbjct: 444 CNLQRMIWNVQKIFHINGRAPTDLSPLRVLDGVSELLRRCVIVAGDD 490 [24][TOP] >UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus RepID=B3FA71_9CARA Length = 227 Score = 77.0 bits (188), Expect = 6e-13 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154 [25][TOP] >UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion levettei RepID=B3FA52_9CARA Length = 226 Score = 77.0 bits (188), Expect = 6e-13 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 49 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 107 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 108 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 153 [26][TOP] >UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion coxendix RepID=B3FA50_9CARA Length = 225 Score = 77.0 bits (188), Expect = 6e-13 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 48 DPSNERYLRRIFNEDIIKQLMGSGDVXSELEREWEQLSRDREALR-QIFPSGESKVVLPC 106 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 107 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 152 [27][TOP] >UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion bifossulatum RepID=B3FA46_9CARA Length = 227 Score = 77.0 bits (188), Expect = 6e-13 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154 [28][TOP] >UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion balli RepID=B3FA45_9CARA Length = 220 Score = 77.0 bits (188), Expect = 6e-13 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 43 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 101 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 102 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 147 [29][TOP] >UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion RepID=B3FA43_9CARA Length = 227 Score = 77.0 bits (188), Expect = 6e-13 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154 [30][TOP] >UniRef100_B4YT41 DNA-directed RNA polymerase (Fragment) n=1 Tax=Macrogyrus oblongus RepID=B4YT41_9COLE Length = 554 Score = 76.6 bits (187), Expect = 8e-13 Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L EW QL++DR+ LR ++F GE+K+ L Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSGDVISELELEWEQLRRDREALR-QIFPNGESKVVLPC 443 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL R ++ ++ Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCVIVAGED 489 [31][TOP] >UniRef100_O02450 DNA-directed RNA polymerase (Fragment) n=1 Tax=Limulus polyphemus RepID=O02450_LIMPO Length = 778 Score = 76.3 bits (186), Expect = 1e-12 Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 4/111 (3%) Frame = +2 Query: 32 SSNSPYLSQAALNDIHSG--GDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 199 +SN YL + D+ G T L L KEW +LK DR+ LR +F TG++K+ L N Sbjct: 454 ASNERYLRRIFTEDVVRDLMGSATALSELEKEWEKLKHDRELLR-AIFPTGDSKVVLPCN 512 Query: 200 IERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 ++R+IW+A++IF V Q +DLSP K++ GVE L+ + V+ ++ + A Sbjct: 513 LQRMIWSAQKIFHVNQRAPTDLSPLKVIGGVEELVKKLVVVPGEDRLSIQA 563 [32][TOP] >UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus melanarius RepID=B4YT39_PTEME Length = 227 Score = 76.3 bits (186), Expect = 1e-12 Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLTRDREALR-QIFPSGESKVVLPC 108 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLKKCVIVAGED 154 [33][TOP] >UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica RepID=A9QMT2_9PELO Length = 488 Score = 76.3 bits (186), Expect = 1e-12 Identities = 35/102 (34%), Positives = 64/102 (62%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E + + Y ++ + ++ + + + KEWAQL++DR LR ++F TG AK+ L N++R Sbjct: 118 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 176 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 LIWNA++IF V +DL+P +++ GV L + +++ D+ Sbjct: 177 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD 218 [34][TOP] >UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica RepID=A9QME0_9PELO Length = 633 Score = 76.3 bits (186), Expect = 1e-12 Identities = 35/102 (34%), Positives = 64/102 (62%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E + + Y ++ + ++ + + + KEWAQL++DR LR ++F TG AK+ L N++R Sbjct: 132 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 190 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 LIWNA++IF V +DL+P +++ GV L + +++ D+ Sbjct: 191 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD 232 [35][TOP] >UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius varius RepID=A8BDP1_PARVA Length = 467 Score = 75.9 bits (185), Expect = 1e-12 Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 4/117 (3%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL+L E + YL++ + D+ + L +EW ++K+D+ LR ++F TG++K+ L Sbjct: 62 DLNLNERTLKRYLNEDIVKDLIANTHCLTELEREWERIKEDQTLLR-QIFPTGDSKVVLP 120 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTS----DEDAEVDA 352 N++R+IWNA++IF + SDL P K+VRGV+ L + V+ + A++DA Sbjct: 121 CNLQRIIWNAQKIFRINPRLPSDLHPLKVVRGVQELSEKLIVVKGVDRISQRAQLDA 177 [36][TOP] >UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus RepID=B4YT43_9DYTI Length = 562 Score = 75.5 bits (184), Expect = 2e-12 Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 ++SN YL + D+ GDV L EW QL+KDR+ LR ++F +GE+ + L Sbjct: 385 DASNEKYLRRVFNEDVIKLMMGSGDVISELELEWDQLQKDREALR-QIFPSGESNVVLPC 443 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL R ++ + Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCIIVAGTD 489 [37][TOP] >UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179338A Length = 1862 Score = 75.1 bits (183), Expect = 2e-12 Identities = 34/95 (35%), Positives = 60/95 (63%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ L D+ D L +EW QL DRD LR E+F +GE+K+ L N++R+IWN ++I Sbjct: 928 NEDVLKDLTGSNDSVTELEREWEQLTTDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 F + + ++DL+P K++ GV+ LL + ++ ++ Sbjct: 987 FHINKRGQTDLNPVKVINGVKELLDKCVIVAGGDE 1021 [38][TOP] >UniRef100_Q9BNE5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Branchia sp. 'Ere' RepID=Q9BNE5_9ARAC Length = 232 Score = 75.1 bits (183), Expect = 2e-12 Identities = 36/112 (32%), Positives = 68/112 (60%), Gaps = 4/112 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 ++SN Y+ ++ + ++ L KEW +LKKDR+ LR +F TG++K+ + Sbjct: 72 DASNERYMHRIFTEEVVRELMGSAMALSELEKEWERLKKDREVLR-TIFPTGDSKVVMPC 130 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 N++R+IWNA++IF V ++DLSP + ++GVE L+ + ++ ++ + A Sbjct: 131 NLQRMIWNAQKIFHVNTRSQTDLSPLRTIKGVEDLVKKLVIVPGEDRLSIQA 182 [39][TOP] >UniRef100_Q9BNE0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hadrurus arizonensis RepID=Q9BNE0_HADAR Length = 543 Score = 75.1 bits (183), Expect = 2e-12 Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 4/112 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + D+ G T L L +EW +L+KDR LR +F TG++K+ L Sbjct: 383 DPSNERYLRRIFTEDVVRELMGSATALSELEREWERLEKDRRVLR-SIFPTGDSKVVLPC 441 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 N++R+IWNA++IF V +DLSP ++V+GVE L+ + V+ ++ + A Sbjct: 442 NLQRMIWNAQKIFHVNLRSATDLSPLRVVQGVEELVKKLVVVPGEDRLSIQA 493 [40][TOP] >UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi RepID=B4YT37_9CARA Length = 369 Score = 75.1 bits (183), Expect = 2e-12 Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 192 DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 250 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ + Sbjct: 251 NLQRMIWNVQKIFHINKRAPTDLSPIRVIQGVRDLLQKCVIVAGKD 296 [41][TOP] >UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus RepID=B4YT48_9CARA Length = 562 Score = 74.7 bits (182), Expect = 3e-12 Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI DV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSSDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 489 [42][TOP] >UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium subgenus complex RepID=B3FA44_9CARA Length = 227 Score = 74.7 bits (182), Expect = 3e-12 Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L + W QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRDREALR-QIFPSGESKVVLPC 108 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154 [43][TOP] >UniRef100_O02478 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vonones ornata RepID=O02478_9ARAC Length = 194 Score = 74.3 bits (181), Expect = 4e-12 Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 4/112 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 +++N YL + D+ G T L L +EW +LK+DR LR VF TG++K+ + Sbjct: 62 DATNERYLRRIFTEDVVRELMGSSTALSELEREWERLKEDRKMLRL-VFTTGDSKVVMPC 120 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 N+ R+IWNA++IF V SDLSP K+++GVE L+ + ++ ++ + A Sbjct: 121 NLSRMIWNAQKIFHVNLRSPSDLSPFKVIQGVEKLIKKLIIVPGEDRLSIQA 172 [44][TOP] >UniRef100_O02452 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mastigoproctus giganteus RepID=O02452_MASGI Length = 887 Score = 74.3 bits (181), Expect = 4e-12 Identities = 36/100 (36%), Positives = 61/100 (61%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ L KEW +LKKDR+ LR VF TG++K+ L N++R+IWNA++I Sbjct: 574 TEDVVRDLLGSATALSELEKEWERLKKDREVLR-TVFPTGDSKVVLPCNLQRMIWNAQKI 632 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 F V +DLSP +++ GVE L+ + ++ ++ + A Sbjct: 633 FRVNARAPTDLSPFRVIHGVEDLVKKLIIVPGEDRLSIQA 672 [45][TOP] >UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion californicum RepID=B3FA42_9CARA Length = 227 Score = 73.9 bits (180), Expect = 5e-12 Identities = 36/106 (33%), Positives = 64/106 (60%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN YL + DI GDV L + W QL ++R+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRBREALR-QIFPSGESKVVLPC 108 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R+IWN ++IF + + +DLSP ++++GV LL + ++ ++ Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKCVIVAGED 154 [46][TOP] >UniRef100_A9QME8 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi RepID=A9QME8_9BILA Length = 252 Score = 73.9 bits (180), Expect = 5e-12 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Frame = +2 Query: 2 LTEPDLHLQESSNS---PYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172 L E D L S Y + D+ + + +EW QL++DR LR ++F TG Sbjct: 93 LFEKDFKLDLSDEKMLKKYYKDEVVRDLQGSSEALNEVEEEWRQLEEDRRLLR-KIFPTG 151 Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +AK+ L N++RLIWNA++IF V +DL+P +++ GV+ L + ++ S ED Sbjct: 152 DAKIVLPCNLQRLIWNAQKIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED 205 [47][TOP] >UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora RepID=A9QMP5_9BILA Length = 474 Score = 73.2 bits (178), Expect = 9e-12 Identities = 34/90 (37%), Positives = 57/90 (63%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + D+ V E + KEW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V Sbjct: 137 IRDLQGDSQVMEEVEKEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVE 195 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 + L+P ++++GV L + ++ D+ Sbjct: 196 TRQPTSLNPLRVIQGVRELSEKLVIVCGDD 225 [48][TOP] >UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis wirthi RepID=Q6GYH6_9BILA Length = 630 Score = 72.8 bits (177), Expect = 1e-11 Identities = 35/102 (34%), Positives = 61/102 (59%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E + Y ++ + D+ S + + EWAQL++DR LR ++F TG AK+ L N++R Sbjct: 138 EKALKKYYTEDVVRDLVSSTEAFREVEAEWAQLEEDRQLLR-KIFPTGNAKIVLPCNLQR 196 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 LIWNA++IF V + L+P K+++GV L + ++ ++ Sbjct: 197 LIWNAQKIFHVEMRKPTTLNPMKVIQGVRELSKKLIIVNGED 238 [49][TOP] >UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PJA3_IXOSC Length = 1937 Score = 72.8 bits (177), Expect = 1e-11 Identities = 33/83 (39%), Positives = 57/83 (68%) Frame = +2 Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283 L KEW +LK+DR+ LR +F TG++K+ L N++R++WNA++IF V +DLSP ++V Sbjct: 952 LEKEWERLKRDREALR-TIFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTDLSPLRVV 1010 Query: 284 RGVELLLHRTRVLTSDEDAEVDA 352 +GVE L+ + ++ ++ + A Sbjct: 1011 QGVEELVKKLVIVPGEDHLSIQA 1033 [50][TOP] >UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium replicatum RepID=Q2PYS3_9FUNG Length = 981 Score = 72.4 bits (176), Expect = 1e-11 Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 1/103 (0%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRIFDV 241 + D+ +V ELL E+ QL +DR LR E+F + LPL VN++R+IW A+++FD Sbjct: 825 VKDVMESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRVIWKAQKLFDR 884 Query: 242 RQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 370 R+ +SDL P I++ V+ LL RT V+ ++ V+A A L Sbjct: 885 RK--QSDLHPRHIIKSVQELLERTVVIRGKDELSVEAQANATL 925 [51][TOP] >UniRef100_Q2PYQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endogone pisiformis RepID=Q2PYQ9_9FUNG Length = 845 Score = 72.0 bits (175), Expect = 2e-11 Identities = 38/93 (40%), Positives = 55/93 (59%) Frame = +2 Query: 74 IHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQND 253 I DV LL +E+ QL++DRD L +FKTG+ K PL N++RLI NA++IF + + Sbjct: 691 IEGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLITNAQQIFHIDRRK 750 Query: 254 RSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 SDL+P I+ GV L V+ + V+A Sbjct: 751 PSDLNPVNIIEGVRKLSEELLVVRGSDKISVEA 783 [52][TOP] >UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U396_PHYPA Length = 1742 Score = 71.6 bits (174), Expect = 3e-11 Identities = 38/102 (37%), Positives = 60/102 (58%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 Y+S A DI + ++ + E ++L+ DR + E+ TGE+ PL VN++RLIWNA+ Sbjct: 931 YMSAEAAEDIKTIQEIRNVFDAEVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQ 990 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +IF V SD+ P +IV VE L R RV+ ++ ++A Sbjct: 991 KIFKVDLRKSSDMHPMEIVEAVENLQERLRVVPGNDQISMEA 1032 [53][TOP] >UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis RepID=B4MAN9_DROVI Length = 1889 Score = 71.6 bits (174), Expect = 3e-11 Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 4/104 (3%) Frame = +2 Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + +D+ D + L EW +L DRD LR +F G++K+ L N+ Sbjct: 917 SNERYMRRVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +R+IWN ++IF + + +DLSP +++RGV+ LL R ++T ++ Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND 1019 [54][TOP] >UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis RepID=B4L732_DROMO Length = 1889 Score = 71.6 bits (174), Expect = 3e-11 Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 4/104 (3%) Frame = +2 Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + +D+ D + L EW +L DRD LR +F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +R+IWN ++IF + + +DLSP +++RGV+ LL R ++T ++ Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND 1019 [55][TOP] >UniRef100_A9QMG2 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura RepID=A9QMG2_9BILA Length = 273 Score = 71.6 bits (174), Expect = 3e-11 Identities = 34/90 (37%), Positives = 56/90 (62%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + D+ D E + EWAQL++DR LR ++F TGE+K L N++RLIWNA++IF V Sbjct: 134 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIFSTGESKCVLPCNLQRLIWNAQKIFHVE 192 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 + + L+P ++RGV L + ++ ++ Sbjct: 193 KREPVCLNPLNVIRGVRSLSEKLIIVGGED 222 [56][TOP] >UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius dolichuroides RepID=A9QMG1_9BILA Length = 629 Score = 71.6 bits (174), Expect = 3e-11 Identities = 34/90 (37%), Positives = 56/90 (62%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + D+ D E + EWAQL++DR LR +++ TGE+K L N++RLIWNA++IF V Sbjct: 151 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIYATGESKCVLPCNLQRLIWNAQKIFHVE 209 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 + + L+P ++RGV L + ++ D+ Sbjct: 210 KREPVCLNPLNVIRGVRSLSEKLIIVGGDD 239 [57][TOP] >UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa RepID=Q30BD8_CYAPA Length = 1000 Score = 71.2 bits (173), Expect = 3e-11 Identities = 38/102 (37%), Positives = 60/102 (58%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 +L +I + L KE+ QL KDR+ LR E+ ++GE + L VN++RLIWNA+ Sbjct: 830 FLDPDVAAEIRGSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQ 889 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +I+ V + SDL P I++GVELL + V+ ++ +A Sbjct: 890 KIYKVDTSKPSDLRPDIILQGVELLSTQLVVIAGEDTLSREA 931 [58][TOP] >UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae RepID=B3MQ29_DROAN Length = 1889 Score = 71.2 bits (173), Expect = 3e-11 Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 4/104 (3%) Frame = +2 Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + +D+ D + L EW +L DRD LR ++F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSDAIQELEAEWDRLVTDRDSLR-QIFPNGDSKVVLPCNL 975 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++ Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 1019 [59][TOP] >UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis RepID=Q2TUN5_EPHVI Length = 1013 Score = 70.9 bits (172), Expect = 4e-11 Identities = 38/109 (34%), Positives = 62/109 (56%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 QE+ + Y+ +DI + + ++L E+ +L+ DR L E+ TGE PL VN++ Sbjct: 843 QENWHPTYMLPEMADDIKNISEFQDVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVNLK 902 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 RLIWNA++IF V SD+ P +IV ++ L R +V+ D+ +A Sbjct: 903 RLIWNAQKIFKVDPRKTSDMQPLEIVDTIDKLQERLKVVPGDDPLSFEA 951 [60][TOP] >UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis plicata RepID=Q6E226_9PELO Length = 636 Score = 70.9 bits (172), Expect = 4e-11 Identities = 34/95 (35%), Positives = 58/95 (61%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 + + + +I D E + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 144 TDSVIREIQESEDAIEKVESEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 202 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 F V DLSP ++ GV + + +++ ++D Sbjct: 203 FKVDTRKPVDLSPLHVIDGVREISSKLIIVSGNDD 237 [61][TOP] >UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum RepID=O01364_9BILA Length = 633 Score = 70.9 bits (172), Expect = 4e-11 Identities = 34/97 (35%), Positives = 59/97 (60%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 + ++ + D+ + + EWAQL++DR LR ++F TG+AK+ L N++RL+WNA+ Sbjct: 138 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 196 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +IF V +DL+P +++ GV L + V+ ED Sbjct: 197 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED 232 [62][TOP] >UniRef100_A9QMQ5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum RepID=A9QMQ5_9BILA Length = 276 Score = 70.9 bits (172), Expect = 4e-11 Identities = 34/97 (35%), Positives = 59/97 (60%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 + ++ + D+ + + EWAQL++DR LR ++F TG+AK+ L N++RL+WNA+ Sbjct: 131 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 189 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +IF V +DL+P +++ GV L + V+ ED Sbjct: 190 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED 225 [63][TOP] >UniRef100_A9QMG3 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata RepID=A9QMG3_9BILA Length = 270 Score = 70.9 bits (172), Expect = 4e-11 Identities = 33/97 (34%), Positives = 60/97 (61%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 + + + ++ + + +EW QL++DR LR ++F TG+AK+ L N++RLIWNA+ Sbjct: 123 HYKEEVVRELQGSSEALTEIEEEWRQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 181 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +IF V +DL+P +++ GV+ L + ++ S ED Sbjct: 182 KIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED 217 [64][TOP] >UniRef100_Q9PTX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lethenteron reissneri RepID=Q9PTX4_LAMRE Length = 595 Score = 70.5 bits (171), Expect = 6e-11 Identities = 34/95 (35%), Positives = 59/95 (62%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + +NDI S + L KE+ +++ DRD LR VF TG++K+ L N+ R+IWNA++ Sbjct: 433 LQEEVVNDIMSNAHIQNELDKEFDRVRSDRDTLR-SVFPTGDSKVVLPCNLMRMIWNAQK 491 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + +D++P +I+ GV+ L R ++ ++ Sbjct: 492 IFHINTRQPTDINPLRIIEGVQDLSKRLMIVKGED 526 [65][TOP] >UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae RepID=Q84KP6_CYAME Length = 1819 Score = 70.5 bits (171), Expect = 6e-11 Identities = 39/102 (38%), Positives = 62/102 (60%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 Y+ ++ + + +V L +E+ QL DR+ L VF TGEAK PL VN++RLI N + Sbjct: 924 YIEPDLIDAVRTDPEVALELEEEYQQLLADREQLC-AVFPTGEAKWPLMVNVQRLIQNCR 982 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 IF ++ + SDL P +I++GV +LL R V+ D++ +A Sbjct: 983 SIFGIQHDTLSDLHPRQIIQGVRVLLQRCVVVPGDDELSREA 1024 [66][TOP] >UniRef100_Q9NJM1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hanseniella sp. 'Han' RepID=Q9NJM1_9MYRI Length = 468 Score = 70.5 bits (171), Expect = 6e-11 Identities = 32/94 (34%), Positives = 57/94 (60%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ V L KEW L+KDR LR E+F G++K+ L N++R+IWNA++I Sbjct: 320 TEDVVKDLIGSAQVLSELEKEWELLQKDRKSLR-EIFPKGDSKVVLPCNLQRMIWNAQKI 378 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F + Q +DL+P +++ GV L + ++ ++ Sbjct: 379 FHINQRSATDLNPVRVIEGVRELTKKIVIVVGED 412 [67][TOP] >UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis drosophilae RepID=Q6E224_9PELO Length = 633 Score = 70.5 bits (171), Expect = 6e-11 Identities = 35/102 (34%), Positives = 58/102 (56%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 Y S+ + D++ D E + EW QL++DR LR ++F G+AK+ L N++RL+WNA+ Sbjct: 141 YYSEDVIRDLNESEDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 199 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +IF V +LSP ++ GV L + ++ +D A Sbjct: 200 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDDISKQA 241 [68][TOP] >UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070 RepID=Q6E223_9PELO Length = 606 Score = 70.5 bits (171), Expect = 6e-11 Identities = 35/102 (34%), Positives = 58/102 (56%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 Y S+ + D++ D E + EW QL++DR LR ++F G+AK+ L N++RL+WNA+ Sbjct: 125 YYSEDVIRDLNESPDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 183 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +IF V +LSP ++ GV L + ++ +D A Sbjct: 184 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDDISKQA 225 [69][TOP] >UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1 Tax=Drosophila simulans RepID=Q1WKU2_DROSI Length = 746 Score = 70.5 bits (171), Expect = 6e-11 Identities = 31/90 (34%), Positives = 58/90 (64%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + Sbjct: 73 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 131 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 + +DLSP ++++GV+ LL R ++T ++ Sbjct: 132 KRLPTDLSPIRVIKGVKTLLERCVIVTGND 161 [70][TOP] >UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia RepID=B4IK28_DROSE Length = 1887 Score = 70.5 bits (171), Expect = 6e-11 Identities = 31/90 (34%), Positives = 58/90 (64%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 + +DLSP ++++GV+ LL R ++T ++ Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND 1019 [71][TOP] >UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster RepID=A9UNH9_DROME Length = 1887 Score = 70.5 bits (171), Expect = 6e-11 Identities = 31/90 (34%), Positives = 58/90 (64%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 + +DLSP ++++GV+ LL R ++T ++ Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND 1019 [72][TOP] >UniRef100_A9QMP1 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis mediterranea RepID=A9QMP1_9PELO Length = 276 Score = 70.5 bits (171), Expect = 6e-11 Identities = 31/94 (32%), Positives = 58/94 (61%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ + + + +EW QL+ DR LR ++F TG+AK+ L N++RLIWNA++I Sbjct: 127 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 185 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F V +DLSP +++ GV + + ++ ++ Sbjct: 186 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED 219 [73][TOP] >UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai RepID=A9QMF9_9BILA Length = 618 Score = 70.5 bits (171), Expect = 6e-11 Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 2/110 (1%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHS--GGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 E + + ++ ++D+ D E + EWAQL++DR LR ++F TG AK+ L N+ Sbjct: 125 EKTMKKFFTEDVIHDLQGPDSKDAIETVEAEWAQLEEDRRLLR-KIFPTGNAKVVLPCNL 183 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +RLIWN ++IF V + L+P K++ GV+ L + +++ D+ A Sbjct: 184 QRLIWNXQKIFRVETRKPTSLNPLKVISGVQELSKKLIIVSGDDSISKQA 233 [74][TOP] >UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347 RepID=A9QMF8_9BILA Length = 621 Score = 70.5 bits (171), Expect = 6e-11 Identities = 36/103 (34%), Positives = 60/103 (58%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E S ++ + ++ D + EW QL++DR LR ++F TG+AK+ L N++R Sbjct: 136 EKSLRTLYTEDVVRELQGSSDALKEAEAEWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 LIWNA++IF V +DL+P +++ GV L + ++ S ED Sbjct: 195 LIWNAQKIFHVETRKPTDLNPIRVIEGVRELSSKL-IIVSGED 236 [75][TOP] >UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis mediterranea RepID=A9QME7_9PELO Length = 618 Score = 70.5 bits (171), Expect = 6e-11 Identities = 31/94 (32%), Positives = 58/94 (61%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ + + + +EW QL+ DR LR ++F TG+AK+ L N++RLIWNA++I Sbjct: 141 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 199 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F V +DLSP +++ GV + + ++ ++ Sbjct: 200 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED 233 [76][TOP] >UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila melanogaster RepID=RPB1_DROME Length = 1887 Score = 70.5 bits (171), Expect = 6e-11 Identities = 31/90 (34%), Positives = 58/90 (64%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 + +DLSP ++++GV+ LL R ++T ++ Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND 1019 [77][TOP] >UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS Length = 1811 Score = 70.1 bits (170), Expect = 7e-11 Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%) Frame = +2 Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+ Sbjct: 839 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 897 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T Sbjct: 898 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 938 [78][TOP] >UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri RepID=Q9U5F6_EPTBU Length = 595 Score = 70.1 bits (170), Expect = 7e-11 Identities = 31/95 (32%), Positives = 60/95 (63%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + ++++ S + L +E+ Q++ DR+ LR VF TG++K+ L N++R+IWNA++ Sbjct: 433 LHEDVVSEVMSSAHIQNCLEREFEQIRDDREVLR-AVFPTGDSKVVLPCNLQRMIWNAQK 491 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + +DL+P ++V GV L + +++ D+ Sbjct: 492 IFHINTRSSTDLNPLRVVEGVNDLTQKLQIVKGDD 526 [79][TOP] >UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei RepID=Q6E228_9BILA Length = 621 Score = 70.1 bits (170), Expect = 7e-11 Identities = 34/103 (33%), Positives = 63/103 (61%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E + + ++ + D+ + + + EW QL++DR LR ++F TG+AK+ L N++R Sbjct: 136 EKTLRKFYTEEVVRDLQGSTEAMKEVESEWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 LIWNA++IF V +DL+P +++ G++ L + ++ S ED Sbjct: 195 LIWNAQKIFHVETRKPTDLNPLRVIDGIKELSSKL-IIVSGED 236 [80][TOP] >UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q29IN2_DROPS Length = 1889 Score = 70.1 bits (170), Expect = 7e-11 Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%) Frame = +2 Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016 [81][TOP] >UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis RepID=B4H2R8_DROPE Length = 1804 Score = 70.1 bits (170), Expect = 7e-11 Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%) Frame = +2 Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016 [82][TOP] >UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae RepID=A9QME1_9BILA Length = 628 Score = 70.1 bits (170), Expect = 7e-11 Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Frame = +2 Query: 2 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172 L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F G Sbjct: 117 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 175 Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 AK+ L N++RL+WNA++IF V +DL+P +++ GV L + ++ S ED Sbjct: 176 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKL-IIVSGED 229 [83][TOP] >UniRef100_Q2N1B5 DNA-directed RNA polymerase II largest subunit (Fragment) n=1 Tax=Platynereis dumerilii RepID=Q2N1B5_PLADU Length = 248 Score = 69.7 bits (169), Expect = 1e-10 Identities = 34/101 (33%), Positives = 57/101 (56%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 +++ + D+ + L EW QL DR+ LR +F TG+AK+ L N+ RLIWNA++ Sbjct: 76 MTEEVIKDLAGNTTAIQTLDHEWEQLMADRERLRG-IFPTGDAKIVLPCNLNRLIWNAQK 134 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 IF + +DL P K+V G+ L + ++ ++ +DA Sbjct: 135 IFRINIRKPTDLHPVKVVEGIRELSKKFLIVKGEDKLSIDA 175 [84][TOP] >UniRef100_A9QMT4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis sp. JU274 RepID=A9QMT4_9PELO Length = 280 Score = 69.7 bits (169), Expect = 1e-10 Identities = 34/97 (35%), Positives = 62/97 (63%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 + ++ + +I + +L+ +EWAQL++DR LR ++F G+AK+ L N+ RLIWNA+ Sbjct: 137 FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 195 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +IF V ++L+P++++ GV L + ++ S ED Sbjct: 196 KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED 231 [85][TOP] >UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130 RepID=A9QMH3_9BILA Length = 619 Score = 69.7 bits (169), Expect = 1e-10 Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 3/115 (2%) Frame = +2 Query: 2 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172 L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F +G Sbjct: 116 LFEQDFKLDLSDERTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPSG 174 Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 AK+ L N++RL+WNA++IF V +DL+P +++ GV L + ++ S ED Sbjct: 175 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED 228 [86][TOP] >UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274 RepID=A9QME6_9PELO Length = 526 Score = 69.7 bits (169), Expect = 1e-10 Identities = 34/97 (35%), Positives = 62/97 (63%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 + ++ + +I + +L+ +EWAQL++DR LR ++F G+AK+ L N+ RLIWNA+ Sbjct: 39 FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 97 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +IF V ++L+P++++ GV L + ++ S ED Sbjct: 98 KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED 133 [87][TOP] >UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1 Tax=Drosophila erecta RepID=Q1WKU4_DROER Length = 760 Score = 69.3 bits (168), Expect = 1e-10 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%) Frame = +2 Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+ Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++ Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 161 [88][TOP] >UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster subgroup RepID=Q1WKU0_DROYA Length = 766 Score = 69.3 bits (168), Expect = 1e-10 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%) Frame = +2 Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+ Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++ Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 161 [89][TOP] >UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba RepID=B4PY98_DROYA Length = 1889 Score = 69.3 bits (168), Expect = 1e-10 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%) Frame = +2 Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++ Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 1019 [90][TOP] >UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni RepID=B4NDK9_DROWI Length = 1890 Score = 69.3 bits (168), Expect = 1e-10 Identities = 31/90 (34%), Positives = 57/90 (63%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + ++ D + L EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + Sbjct: 931 IKEMTDSSDAIQELESEWDRLVVDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHIN 989 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 + +DLSP ++++GV LL R ++T ++ Sbjct: 990 KRLPTDLSPMRVIKGVRGLLERCVIVTGND 1019 [91][TOP] >UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi RepID=B4JXA6_DROGR Length = 1889 Score = 69.3 bits (168), Expect = 1e-10 Identities = 38/105 (36%), Positives = 64/105 (60%), Gaps = 5/105 (4%) Frame = +2 Query: 35 SNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 199 SN Y+ + +D+ S + EL A EW L DRD LR +F+ G++K+ L N Sbjct: 917 SNERYMRKVFADDVIKEITESSVAIQELEA-EWDHLVTDRDNLR-TIFRNGDSKVVLPCN 974 Query: 200 IERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 ++R+IWN ++IF + + +DLSP +++RGV LL+R ++T ++ Sbjct: 975 LQRMIWNVQKIFHINKRLPTDLSPMRVIRGVSDLLNRCVIVTGND 1019 [92][TOP] >UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta RepID=B3NUC1_DROER Length = 1889 Score = 69.3 bits (168), Expect = 1e-10 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 4/104 (3%) Frame = +2 Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++ Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 1019 [93][TOP] >UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster subgroup RepID=A9YGC1_DROME Length = 247 Score = 69.3 bits (168), Expect = 1e-10 Identities = 31/77 (40%), Positives = 53/77 (68%) Frame = +2 Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283 L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP +++ Sbjct: 1 LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 59 Query: 284 RGVELLLHRTRVLTSDE 334 +GV+ LL R ++T ++ Sbjct: 60 KGVKTLLERCVIVTGND 76 [94][TOP] >UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara RepID=A9QMS7_9BILA Length = 407 Score = 69.3 bits (168), Expect = 1e-10 Identities = 34/91 (37%), Positives = 59/91 (64%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + ++ + + + + +EW QL+ DR LR ++F TG+A + L N++R++WNA++IF V Sbjct: 148 IRELQNSPEALQAVEEEWIQLESDRRLLR-KIFPTGKAGVVLPCNLDRMMWNARKIFHVE 206 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +DLSP K+++GV+ L R V+ S ED Sbjct: 207 TRKPTDLSPLKVIQGVKDLTSRL-VIVSGED 236 [95][TOP] >UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122 RepID=A9QMD9_9BILA Length = 595 Score = 69.3 bits (168), Expect = 1e-10 Identities = 35/97 (36%), Positives = 59/97 (60%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 + S+ + ++ + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA+ Sbjct: 102 HYSEDVVRELMGSPEALREVEGEWAQLEEDRRLLR-KIFPNGDAKIVLPCNLQRLIWNAQ 160 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +IF + +DLSP +++ GV L R ++ S ED Sbjct: 161 KIFHIELRKPTDLSPLRVIEGVR-ELSRKLIIVSGED 196 [96][TOP] >UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis RepID=Q4P7Q0_USTMA Length = 1774 Score = 69.3 bits (168), Expect = 1e-10 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 15/113 (13%) Frame = +2 Query: 71 DIHSGG---------------DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 D+H GG ++ +LL +E+AQL+ DR+ LRHE+F++ + ++ L +N+ Sbjct: 914 DLHDGGFKKGTLRPGLGDWSQELQDLLDEEFAQLEFDRNLLRHEIFQSDQVQVRLPMNVA 973 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364 RL+ NA++IF V +DLSP++++ G+ +L R V+ D D I+RE Sbjct: 974 RLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE 1021 [97][TOP] >UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium vulgare RepID=Q9NJN3_ARMVU Length = 433 Score = 68.9 bits (167), Expect = 2e-10 Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 4/117 (3%) Frame = +2 Query: 14 DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 181 D + + +N YL ++ + ++ + +L EW +L++DR LR +VF G+ K Sbjct: 75 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 133 Query: 182 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 + L N+ER+IWN ++IF + + ++DLSP K+V GV L + +++ ++ V A Sbjct: 134 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGEDRISVQA 190 [98][TOP] >UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium vulgare RepID=Q6JU60_ARMVU Length = 736 Score = 68.9 bits (167), Expect = 2e-10 Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 4/117 (3%) Frame = +2 Query: 14 DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 181 D + + +N YL ++ + ++ + +L EW +L++DR LR +VF G+ K Sbjct: 378 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 436 Query: 182 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 + L N+ER+IWN ++IF + + ++DLSP K+V GV L + +++ ++ V A Sbjct: 437 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGEDRISVQA 493 [99][TOP] >UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1 Tax=Drosophila orena RepID=Q1WKU3_DROOR Length = 750 Score = 68.9 bits (167), Expect = 2e-10 Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%) Frame = +2 Query: 35 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + +D+ + + L EW L DRD LR ++F G++K+ L N+ Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDHLVGDRDSLR-QIFPNGDSKVVLPCNL 117 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T ++ Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND 161 [100][TOP] >UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum halicti RepID=P90678_9BILA Length = 631 Score = 68.9 bits (167), Expect = 2e-10 Identities = 33/100 (33%), Positives = 59/100 (59%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ S + + EW QL+ DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 140 TEDVIRDVQSSSESIKEAELEWMQLQDDRQLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 198 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 F V +DL+P ++++GV + + ++ D+ V A Sbjct: 199 FHVETRKVTDLNPVRVIQGVREVSKKLIIVGGDDRISVQA 238 [101][TOP] >UniRef100_O02428 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dysdera crocata RepID=O02428_DYSCR Length = 240 Score = 68.9 bits (167), Expect = 2e-10 Identities = 37/110 (33%), Positives = 64/110 (58%), Gaps = 4/110 (3%) Frame = +2 Query: 35 SNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 +N YL + +D+ G T + +EW +LK DR LR +F TG++K+ L N+ Sbjct: 82 TNERYLRRIFTDDVIREISGSTTAISEFEREWDKLKTDRGILRI-IFPTGDSKVVLPCNL 140 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 R+IWNA++IF V +DLSP ++++GV+ L+ + ++ ++ V A Sbjct: 141 SRMIWNAQKIFHVNTRAPTDLSPIRVMKGVDELVKKLTIVAGEDRLSVQA 190 [102][TOP] >UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus RepID=B0XAQ9_CULQU Length = 1874 Score = 68.9 bits (167), Expect = 2e-10 Identities = 30/94 (31%), Positives = 60/94 (63%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + ++ GDV + + E+ QL +DR+ LR ++F G++K+ L N++R+IWN ++I Sbjct: 925 NEEVIKELTESGDVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F + + +DLSP K+++GV LL + ++ + Sbjct: 984 FHINKRAPTDLSPLKVIQGVRDLLQKCVIVAGTD 1017 [103][TOP] >UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae RepID=A9QMP3_9BILA Length = 406 Score = 68.9 bits (167), Expect = 2e-10 Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Frame = +2 Query: 2 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172 L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F G Sbjct: 124 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 182 Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSD 331 AK+ L N++RL+WNA++IF V +DL+P +++ GV L + +++ + Sbjct: 183 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKLIIVSGE 235 [104][TOP] >UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis RepID=A9QMF5_9BILA Length = 630 Score = 68.9 bits (167), Expect = 2e-10 Identities = 32/80 (40%), Positives = 52/80 (65%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ S D + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 136 TEEVIRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 194 Query: 233 FDVRQNDRSDLSPSKIVRGV 292 F V +DL P +++ GV Sbjct: 195 FHVETRKPTDLHPLRVIEGV 214 [105][TOP] >UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium aggregatum RepID=Q2PYS6_9FUNG Length = 1016 Score = 68.9 bits (167), Expect = 2e-10 Identities = 37/91 (40%), Positives = 53/91 (58%) Frame = +2 Query: 80 SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRS 259 S G L +E+ QL+KDR+ LR +FK G + PL VN++RLIWNA+ F+V + Sbjct: 864 SDGLTQNRLDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWNAQNQFEVGPRKPT 923 Query: 260 DLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 DL P I VE LL + V+ ++ V+A Sbjct: 924 DLHPLHITESVEQLLDKLVVVRGNDPLSVEA 954 [106][TOP] >UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius elegans RepID=Q6JTX1_9BILA Length = 304 Score = 68.6 bits (166), Expect = 2e-10 Identities = 31/106 (29%), Positives = 67/106 (63%), Gaps = 4/106 (3%) Frame = +2 Query: 29 ESSNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 ++SN YL + +N I + V + L +E+ Q+K+DR+ +R ++F TG++++ L Sbjct: 54 QTSNERYLRRLYEPDIVNSIMTDAGVPQALEQEFEQMKRDREIIR-KIFPTGDSRVVLPC 112 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++R++WNA++IF ++ +DL P ++V G+ L+ + ++ ++ Sbjct: 113 NLQRMVWNAQKIFHIKGRGTTDLHPVRVVEGLNELMKKLVIVKGED 158 [107][TOP] >UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf. armata SB363 RepID=A9UEE2_9BILA Length = 475 Score = 68.6 bits (166), Expect = 2e-10 Identities = 34/75 (45%), Positives = 52/75 (69%) Frame = +2 Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292 EWAQL++DR LR ++F TG+AK+ L N++RLIWNA++IF V +DL+P +++ G+ Sbjct: 154 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGI 212 Query: 293 ELLLHRTRVLTSDED 337 L + V+ S ED Sbjct: 213 RELSTKL-VIVSGED 226 [108][TOP] >UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CBQ3_YARLI Length = 1750 Score = 68.6 bits (166), Expect = 2e-10 Identities = 38/95 (40%), Positives = 56/95 (58%) Frame = +2 Query: 68 NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 247 NDI +V +L +E+ QL DR LR EVF G+ PL VNI R++ N++RIF+V + Sbjct: 920 NDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQRIFNVDK 979 Query: 248 NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 + SDL+ +IV GV+ L R ++ D +A Sbjct: 980 SKVSDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEA 1014 [109][TOP] >UniRef100_A1YIA8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taphrina deformans RepID=A1YIA8_9ASCO Length = 1001 Score = 68.6 bits (166), Expect = 2e-10 Identities = 39/111 (35%), Positives = 67/111 (60%) Frame = +2 Query: 2 LTEPDLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 181 +T+PD + S P +DI +V +LL +E+ +L +DR L+ +F +G++ Sbjct: 824 VTDPDRTIPPSFFEPG------HDIDGDFEVQKLLDQEFKELSEDRRDLQTLIFPSGDSS 877 Query: 182 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 PL VN++R+I N+K+IF + + R+DLSP+KI GV LL R ++ ++ Sbjct: 878 WPLPVNLDRIILNSKQIFHIAPHRRTDLSPAKIYTGVRDLLSRLIIVRGND 928 [110][TOP] >UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp. RepID=O04144_9VIRI Length = 613 Score = 68.2 bits (165), Expect = 3e-10 Identities = 36/109 (33%), Positives = 60/109 (55%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 QE + Y+ D + +++ E QL++DR L E+ TG++ PL VNI+ Sbjct: 431 QEDWSPDYMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIK 490 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 RLIWNA++IF + SD++P +V G++ L R +V+ D+ +A Sbjct: 491 RLIWNAQKIFKIDLRKPSDMNPMDVVDGMDKLQERLKVVVGDDHISREA 539 [111][TOP] >UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SXC0_RICCO Length = 1855 Score = 68.2 bits (165), Expect = 3e-10 Identities = 36/108 (33%), Positives = 62/108 (57%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E+ N Y+ Q ++D+ + ++ ++ E +L+ DR L E+ TG++ PL VN+ R Sbjct: 922 ENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRR 981 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 LIWNA++ F V + SD+ P + V V+ L R +V+ D+ V+A Sbjct: 982 LIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVPGDDPLSVEA 1029 [112][TOP] >UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis RepID=Q9XZS2_DROMD Length = 1889 Score = 68.2 bits (165), Expect = 3e-10 Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 4/101 (3%) Frame = +2 Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + + +I + + L EW L DRD LR +F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDEVIKEITDSSEAIQDLESEWDNLMHDRDNLR-VIFPNGDSKVVLPCNL 975 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016 [113][TOP] >UniRef100_Q9BNL1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Orthoporus ornata RepID=Q9BNL1_9MYRI Length = 222 Score = 68.2 bits (165), Expect = 3e-10 Identities = 33/83 (39%), Positives = 51/83 (61%) Frame = +2 Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283 L KEW LK+DR+ LRH +F G+ K+ L N++R+IWNA++IF + +DLSP K++ Sbjct: 91 LEKEWETLKRDRELLRH-IFPKGDNKVVLPGNLQRMIWNAQKIFHINLRAPTDLSPLKVI 149 Query: 284 RGVELLLHRTRVLTSDEDAEVDA 352 GV L R ++ ++ A Sbjct: 150 DGVRELSKRLVIVPGEDSLSKQA 172 [114][TOP] >UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis RepID=A9QMP7_9BILA Length = 440 Score = 68.2 bits (165), Expect = 3e-10 Identities = 32/76 (42%), Positives = 50/76 (65%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + D+ S D + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++IF V Sbjct: 103 IRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVE 161 Query: 245 QNDRSDLSPSKIVRGV 292 +DL P +++ GV Sbjct: 162 TRKPTDLHPLRVIEGV 177 [115][TOP] >UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides dermatitica RepID=A9QMG4_9PELO Length = 478 Score = 68.2 bits (165), Expect = 3e-10 Identities = 33/94 (35%), Positives = 57/94 (60%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ + + + EW QL++DR LR ++F G+ K+ L N++RLIWNA++I Sbjct: 126 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 184 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F V S L+P K+V GV+ L H+ ++ D+ Sbjct: 185 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD 218 [116][TOP] >UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera strongyloides dermatitica RepID=A9QMF0_9PELO Length = 633 Score = 68.2 bits (165), Expect = 3e-10 Identities = 33/94 (35%), Positives = 57/94 (60%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ + + + EW QL++DR LR ++F G+ K+ L N++RLIWNA++I Sbjct: 145 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 203 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F V S L+P K+V GV+ L H+ ++ D+ Sbjct: 204 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD 237 [117][TOP] >UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019270E9 Length = 2014 Score = 67.8 bits (164), Expect = 4e-10 Identities = 34/101 (33%), Positives = 60/101 (59%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L++ L +I+S T + +E+ QLK DR+ LR+ +F G K+ L V + RLIWN+++ Sbjct: 934 LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +F V ++DLSP K++ ++ L R V+ ++ +A Sbjct: 993 MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEA 1033 [118][TOP] >UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 1 n=1 Tax=Hydra magnipapillata RepID=UPI00019270BB Length = 2041 Score = 67.8 bits (164), Expect = 4e-10 Identities = 34/101 (33%), Positives = 60/101 (59%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L++ L +I+S T + +E+ QLK DR+ LR+ +F G K+ L V + RLIWN+++ Sbjct: 935 LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 993 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +F V ++DLSP K++ ++ L R V+ ++ +A Sbjct: 994 MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEA 1034 [119][TOP] >UniRef100_Q2TUN8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taxus canadensis RepID=Q2TUN8_TAXCA Length = 1013 Score = 67.8 bits (164), Expect = 4e-10 Identities = 34/109 (31%), Positives = 61/109 (55%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 QE+ N Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++ Sbjct: 843 QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIATTGDNSWPMPVNLK 902 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 RLIWNA++ F + RSD+ P +IV ++ L R +V+ D+ ++A Sbjct: 903 RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLMSIEA 951 [120][TOP] >UniRef100_O02416 RNA polymerase II largest subunit (Fragment) n=1 Tax=Aphonopelma chalcodes RepID=O02416_APHCH Length = 240 Score = 67.8 bits (164), Expect = 4e-10 Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 4/112 (3%) Frame = +2 Query: 29 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 +++N YL ++ + D+ KEW +LK DR+ LR +F TG +++ L Sbjct: 80 DAANERYLRRIFTEDVVRDLLGSSTALSEFEKEWERLKTDREVLRI-IFPTGNSRVVLPC 138 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 N+ R+IWNA++IF V +DLSP +++ GVE L+ + ++ ++ + A Sbjct: 139 NLLRMIWNAQKIFHVNTRAPTDLSPLRVIHGVEELVKKLVIVPGEDRLSIQA 190 [121][TOP] >UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei RepID=Q6E233_CAERE Length = 611 Score = 67.4 bits (163), Expect = 5e-10 Identities = 34/100 (34%), Positives = 59/100 (59%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 127 SEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 185 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 F V +LSP ++ GV L + +++ +++ A Sbjct: 186 FKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 225 [122][TOP] >UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1 Tax=Suberites fuscus RepID=Q2N162_9METZ Length = 260 Score = 67.4 bits (163), Expect = 5e-10 Identities = 35/96 (36%), Positives = 56/96 (58%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + D+ + L EW QL +DR+ +R VF TG +K+ L VN+ RLIWNA++IF V Sbjct: 87 VRDLLTSSTAQTELESEWQQLCQDREIVR-SVFPTGNSKIVLPVNLNRLIWNAQKIFHVD 145 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 ++DL P K+V GV L ++ ++ +++ A Sbjct: 146 IRGQTDLHPLKVVEGVRDLSNKLIIVQGEDELSKQA 181 [123][TOP] >UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta RepID=Q25203_9CAEN Length = 1343 Score = 67.4 bits (163), Expect = 5e-10 Identities = 34/95 (35%), Positives = 54/95 (56%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + + + E L EW QL DRD R +VF TG+A++ L N++R+IWNA++ Sbjct: 848 LKEDVIKGLRGEHRLIEELESEWLQLISDRDSAR-QVFSTGDARIVLPCNLQRMIWNAQK 906 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + + SDL P +V GV L R ++ ++ Sbjct: 907 IFRIDKRKPSDLDPINVVSGVRDLCQRLTIVEGED 941 [124][TOP] >UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp. JU727 RepID=A9QMQ9_9PELO Length = 620 Score = 67.4 bits (163), Expect = 5e-10 Identities = 34/100 (34%), Positives = 59/100 (59%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 144 SEDVVREIQESTDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 202 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 F V +LSP ++ GV L + +++ +++ A Sbjct: 203 FKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 242 [125][TOP] >UniRef100_Q2PYP9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix sp. GE13 RepID=Q2PYP9_9FUNG Length = 813 Score = 67.4 bits (163), Expect = 5e-10 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Frame = +2 Query: 2 LTEPDLHLQESSNSPYLSQAALNDIHSGGDVT-ELLAKEWAQLKKDRDFLRHEVFKTGEA 178 LT+ D L+ + L + L D+ +V E L +E+ L++DR R +FK G++ Sbjct: 638 LTDKDFGLKPKT----LQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDS 693 Query: 179 KLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 PL VN+ RLIWNA+ IF + + SDL P I + LL R V+ D+ +A Sbjct: 694 SWPLPVNVRRLIWNAQNIFSINKRKESDLHPLYICEKRDELLKRLVVVRGDDKLSKEA 751 [126][TOP] >UniRef100_A1YIC6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix frontalis RepID=A1YIC6_NEOFR Length = 1004 Score = 67.4 bits (163), Expect = 5e-10 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Frame = +2 Query: 2 LTEPDLHLQESSNSPYLSQAALNDIHSGGDVT-ELLAKEWAQLKKDRDFLRHEVFKTGEA 178 LT+ D L+ + L + L D+ +V E L +E+ L++DR R +FK G++ Sbjct: 824 LTDKDFGLKPKT----LQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDS 879 Query: 179 KLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 PL VN+ RLIWNA+ IF + + SDL P I + LL R V+ D+ +A Sbjct: 880 SWPLPVNVRRLIWNAQNIFSINKRKESDLHPLYICEKRDELLKRLVVVRGDDKLSKEA 937 [127][TOP] >UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium discoideum RepID=RPB1_DICDI Length = 1727 Score = 67.4 bits (163), Expect = 5e-10 Identities = 32/101 (31%), Positives = 60/101 (59%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 ++ + + + + L KE+ ++K DR LR+E+ +GEA PL VN+ RLI NA+ Sbjct: 919 WMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQ 978 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVD 349 ++F++ SDL+P+ +V +E L+ R +++ + + E D Sbjct: 979 KLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTEDD 1019 [128][TOP] >UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis briggsae RepID=RPB1_CAEBR Length = 1853 Score = 67.4 bits (163), Expect = 5e-10 Identities = 34/100 (34%), Positives = 59/100 (59%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 929 SEDVVREIQEAQDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 987 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 F V +LSP ++ GV L + +++ +++ A Sbjct: 988 FKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 1027 [129][TOP] >UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura RepID=Q9XZU9_DROSU Length = 1889 Score = 67.0 bits (162), Expect = 6e-10 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%) Frame = +2 Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + + ++ + + L EW L DRD LR +F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016 [130][TOP] >UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche RepID=Q9XZS1_DROGU Length = 1889 Score = 67.0 bits (162), Expect = 6e-10 Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 4/101 (3%) Frame = +2 Query: 35 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 SN Y+ + + ++ + + L EW L DRD LR +F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT 325 +R+IWN ++IF + + +DLSP ++++GV+ LL R ++T Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVT 1016 [131][TOP] >UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri RepID=Q6E231_CAEBE Length = 596 Score = 67.0 bits (162), Expect = 6e-10 Identities = 34/102 (33%), Positives = 60/102 (58%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 + S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA+ Sbjct: 117 HYSEDVVREIQESLDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQ 175 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +IF V +LSP ++ GV L + +++ +++ A Sbjct: 176 KIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQA 217 [132][TOP] >UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis elegans RepID=RPB1_CAEEL Length = 1852 Score = 67.0 bits (162), Expect = 6e-10 Identities = 34/100 (34%), Positives = 59/100 (59%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 925 SEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 983 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 F V +LSP ++ GV L + +++ +++ A Sbjct: 984 FKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQA 1023 [133][TOP] >UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A92 Length = 1714 Score = 66.6 bits (161), Expect = 8e-10 Identities = 31/95 (32%), Positives = 57/95 (60%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 912 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 970 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + +DLSP ++V G L + ++ D+ Sbjct: 971 IFRINTRTPTDLSPLRVVEGTHELSKKLVIVNGDD 1005 [134][TOP] >UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum RepID=Q1ACV3_ACEPM Length = 240 Score = 66.6 bits (161), Expect = 8e-10 Identities = 32/109 (29%), Positives = 64/109 (58%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 Q++ N Y+ Q ++++ + ++ ++ E +L+ DR L E+ +G++ P+ VN++ Sbjct: 73 QDNWNPNYMLQEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPMPVNLK 132 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 RLIWNA++ F V SD+ P ++V ++ L R +V+ D+ V+A Sbjct: 133 RLIWNAQKTFKVDPRRPSDMHPMEVVEAIDKLQERLKVVPGDDALSVEA 181 [135][TOP] >UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica RepID=Q6E227_CAEJA Length = 608 Score = 66.6 bits (161), Expect = 8e-10 Identities = 34/100 (34%), Positives = 58/100 (58%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 S+ + +I D L+ EW+QL++DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 127 SEDVVREIQESEDGISLVESEWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKI 185 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 F V +LSP ++ GV L + ++ +++ A Sbjct: 186 FKVDLRKPVNLSPLHVINGVRELSKKLIIVCGNDEISKQA 225 [136][TOP] >UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp. SB341 RepID=Q6E225_9PELO Length = 622 Score = 66.6 bits (161), Expect = 8e-10 Identities = 37/113 (32%), Positives = 63/113 (55%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL + + S Y + + + D E + EW QL++DR LR ++F TG+AK+ L Sbjct: 132 DLADERTLKSCY-EEHVVRQLKEAPDAIEKVEAEWNQLEEDRRLLR-KIFPTGDAKVVLP 189 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 N++RLIWNA++IF V ++LSP ++ GV + + +++ +D A Sbjct: 190 CNLQRLIWNAQKIFKVDLRKPTNLSPLHVIEGVREVSKKLIIVSGSDDISKQA 242 [137][TOP] >UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1 Tax=Aphrocallistes vastus RepID=Q2N108_9METZ Length = 254 Score = 66.6 bits (161), Expect = 8e-10 Identities = 32/111 (28%), Positives = 62/111 (55%) Frame = +2 Query: 20 HLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 199 + E ++S+ ++++ + +E+A+L DR LR E+FK G +K+ L N Sbjct: 81 YTNERQLKKFISEDVIHELGVNPEAQAKFEEEFARLHDDRMILR-EIFKDGNSKVVLPCN 139 Query: 200 IERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 + R+IWNA++ F + + SDL+P K++ GVE L + ++ ++ +A Sbjct: 140 LSRMIWNAQKTFKINTRNNSDLNPLKVIEGVEELCKKLVIVDGEDSISKEA 190 [138][TOP] >UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina RepID=Q17085_ARTSA Length = 1341 Score = 66.6 bits (161), Expect = 8e-10 Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 4/107 (3%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSG----GDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 196 + SN L + D+ +V + KEW L KDR+ LR +VF +GE K+ L Sbjct: 835 DPSNERQLRKTFTEDVTKSLLGDSEVITEIEKEWEALVKDREALR-KVFPSGENKVVLPC 893 Query: 197 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 N++R+IWNA++ F + + SDLSP ++++GV LL + V+ + ED Sbjct: 894 NLQRMIWNAQKTFHINKRMPSDLSPLRVIQGVRDLL-KNCVIVNGED 939 [139][TOP] >UniRef100_O02454 RNA polymerase II largest subunit (Fragment) n=1 Tax=Narceus americanus RepID=O02454_9MYRI Length = 227 Score = 66.6 bits (161), Expect = 8e-10 Identities = 35/79 (44%), Positives = 50/79 (63%) Frame = +2 Query: 104 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 283 L KEW L++DRD LR +F G+ K+ L N++R+IWNA++IF + +DLSP K++ Sbjct: 96 LEKEWEALRRDRDVLR-SIFPKGDNKVVLPCNLQRMIWNAQKIFHINLRAPTDLSPLKVI 154 Query: 284 RGVELLLHRTRVLTSDEDA 340 GV L R V+ EDA Sbjct: 155 DGVR-ELSRKLVIVPGEDA 172 [140][TOP] >UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA Length = 1943 Score = 66.6 bits (161), Expect = 8e-10 Identities = 34/103 (33%), Positives = 61/103 (59%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E S ++ + ++ + + + EW QL++DR LR ++F G+AK+ L N++R Sbjct: 992 EKSLRKLYTENVVRELQGSAEALKEVEAEWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQR 1050 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +IWNA++IF V +DL+P +++ GV+ L + V+ S ED Sbjct: 1051 MIWNAQKIFRVELRKPTDLNPLRVIEGVK-ELSKKLVIVSGED 1092 [141][TOP] >UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis macrandra RepID=Q9C428_9FUNG Length = 1603 Score = 66.6 bits (161), Expect = 8e-10 Identities = 32/79 (40%), Positives = 51/79 (64%) Frame = +2 Query: 98 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 277 ++L E+ QL +DR+ +R+ +F+ G++ PL NI RLIWNA+ + + N S+L P + Sbjct: 872 KVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEE 931 Query: 278 IVRGVELLLHRTRVLTSDE 334 IVR V LL R V+T ++ Sbjct: 932 IVRDVNDLLSRCIVITGED 950 [142][TOP] >UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624 RepID=Q0D054_ASPTN Length = 1742 Score = 66.6 bits (161), Expect = 8e-10 Identities = 40/113 (35%), Positives = 64/113 (56%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL E S P + + A N+I +V L +EW QL KDR FLR V K E + L Sbjct: 921 DLMDPERSLGPEILEQA-NEIAGDVEVQRYLDEEWEQLLKDRAFLR-TVAKEDEEMMQLP 978 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +N++R++ A+ F +R+ SDL P++++ V+ LL R +++ D+ V+A Sbjct: 979 INVQRILETARSTFRIREGTISDLHPAEVIPQVQSLLDRLKIVRGDDIISVEA 1031 [143][TOP] >UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio RepID=UPI0000546D90 Length = 1972 Score = 66.2 bits (160), Expect = 1e-09 Identities = 30/95 (31%), Positives = 60/95 (63%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ + V L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 931 LQEDVVKDVMTNAHVQSSLEREFEKMREDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 989 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + +DL+P+++V GV+ L + ++ D+ Sbjct: 990 IFRINPRAPTDLNPARVVDGVKELSKKLVIVNGDD 1024 [144][TOP] >UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E658E Length = 1628 Score = 66.2 bits (160), Expect = 1e-09 Identities = 31/95 (32%), Positives = 57/95 (60%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 932 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 990 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + +DLSP ++V G L + ++ D+ Sbjct: 991 IFRINTRTPTDLSPLRVVEGTHDLSKKLVIVNGDD 1025 [145][TOP] >UniRef100_Q2TUN9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thuja occidentalis RepID=Q2TUN9_THUOC Length = 1013 Score = 66.2 bits (160), Expect = 1e-09 Identities = 33/109 (30%), Positives = 61/109 (55%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 QE+ N Y+ ++D+ + + + E +L+ DR L E+ +G+ P+ VN++ Sbjct: 843 QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVNLK 902 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 RLIWNA++ F + RSD+ P +IV ++ L R +V+ D+ ++A Sbjct: 903 RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLISIEA 951 [146][TOP] >UniRef100_Q1ACT1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Quercus coccinea RepID=Q1ACT1_9ROSI Length = 240 Score = 66.2 bits (160), Expect = 1e-09 Identities = 36/108 (33%), Positives = 59/108 (54%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E N Y+ Q + D+ + + + E +L+ DR L E+ TG+ PL VN++R Sbjct: 74 EHWNPDYMMQEHIEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPLPVNLKR 133 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 LIWNA++IF + SD+ P +IV V+ L R +V+ ++ V+A Sbjct: 134 LIWNAQKIFKIDNRRHSDMHPMEIVEAVDKLQERLKVVPGEDLLSVEA 181 [147][TOP] >UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK89_PHYPA Length = 1646 Score = 66.2 bits (160), Expect = 1e-09 Identities = 35/88 (39%), Positives = 52/88 (59%) Frame = +2 Query: 89 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 268 D + E ++L+ DR + E+ TGEA PL VN++RLIWNA++IF V SD+ Sbjct: 930 DYINVFDAEVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQKIFKVDFRKPSDMH 989 Query: 269 PSKIVRGVELLLHRTRVLTSDEDAEVDA 352 P +IV V+ L R RV+ D+ ++A Sbjct: 990 PMEIVEAVDKLQERLRVVPGDDQISMEA 1017 [148][TOP] >UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010 RepID=Q6E232_9PELO Length = 601 Score = 66.2 bits (160), Expect = 1e-09 Identities = 32/100 (32%), Positives = 57/100 (57%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + ++ + E + EWAQL +DR LR ++F G+AK+ L N++RL+WNA++I Sbjct: 127 TEDVIRELQESSEAIEKIESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKI 185 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 F V +LSP ++ GV L + ++ ++D A Sbjct: 186 FKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDDISKQA 225 [149][TOP] >UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified nematode RepID=O01376_9BILA Length = 633 Score = 66.2 bits (160), Expect = 1e-09 Identities = 32/100 (32%), Positives = 57/100 (57%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + ++ + E + EWAQL +DR LR ++F G+AK+ L N++RL+WNA++I Sbjct: 140 TEDVIRELQESSEAIEKIESEWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKI 198 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 F V +LSP ++ GV L + ++ ++D A Sbjct: 199 FKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDDISKQA 238 [150][TOP] >UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp. EM434 RepID=A9QMQ7_9BILA Length = 398 Score = 66.2 bits (160), Expect = 1e-09 Identities = 36/108 (33%), Positives = 64/108 (59%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL ++S Y ++ +++ + + EW QL++DR LR ++F +G+AK+ L Sbjct: 132 DLSDEKSLRKMY-TEDVQHELQGSSEALKEAEDEWNQLEEDRRLLR-KIFPSGDAKIVLP 189 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 N++RLIWNA++IF V +DL+P +++ GV L + ++ S ED Sbjct: 190 CNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED 236 [151][TOP] >UniRef100_A1YIC2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coelomomyces stegomyiae RepID=A1YIC2_9FUNG Length = 1014 Score = 66.2 bits (160), Expect = 1e-09 Identities = 34/88 (38%), Positives = 56/88 (63%) Frame = +2 Query: 89 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 268 DV +LL +E++QLK DR LR ++F TG+A PL +N++R+IWNA+ +F + + S+L Sbjct: 861 DVQKLLDEEFSQLKDDRACLR-KIFLTGDANWPLPMNLKRIIWNAQNLFKIDKQRPSNLH 919 Query: 269 PSKIVRGVELLLHRTRVLTSDEDAEVDA 352 P +V V L + V+ D+ ++A Sbjct: 920 PDYVVNQVRGLCDKLTVIRGDDKISLEA 947 [152][TOP] >UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351 Length = 2085 Score = 65.9 bits (159), Expect = 1e-09 Identities = 33/102 (32%), Positives = 57/102 (55%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+ Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 + F + SD+ P +IV ++ L R +V+ D+D ++A Sbjct: 989 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA 1030 [153][TOP] >UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q5WMZ9_ORYSJ Length = 1741 Score = 65.9 bits (159), Expect = 1e-09 Identities = 33/102 (32%), Positives = 57/102 (55%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+ Sbjct: 876 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 935 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 + F + SD+ P +IV ++ L R +V+ D+D ++A Sbjct: 936 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA 977 [154][TOP] >UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q0DKN9_ORYSJ Length = 1834 Score = 65.9 bits (159), Expect = 1e-09 Identities = 33/102 (32%), Positives = 57/102 (55%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+ Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 + F + SD+ P +IV ++ L R +V+ D+D ++A Sbjct: 989 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA 1030 [155][TOP] >UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum RepID=Q2PYS1_9FUNG Length = 1015 Score = 65.9 bits (159), Expect = 1e-09 Identities = 33/96 (34%), Positives = 54/96 (56%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 L D+ +L +E+ QL DR LR +F +G+ PL N++RL+WNA+ IF + Sbjct: 858 LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWNAQNIFHID 917 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 + S+L P +I+ GV+LL+ R V+ + +A Sbjct: 918 KRKPSNLHPLQIIEGVKLLIDRLVVVRGSDKLSNEA 953 [156][TOP] >UniRef100_C3U0B8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gymnoascus reesii RepID=C3U0B8_9EURO Length = 618 Score = 65.9 bits (159), Expect = 1e-09 Identities = 41/113 (36%), Positives = 64/113 (56%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL ES+ SP + + A +I +V + L +EW QL DR FLR V K E K+ L Sbjct: 447 DLMDPESTLSPDILEQA-GEIAGDMEVQKYLDEEWEQLVADRKFLR-SVAKEDEEKMQLP 504 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +N++R++ +AK F +R SDL P++++ V+ LL R V+ D+ +A Sbjct: 505 INVQRILESAKTAFRIRDGTISDLHPAEVIPQVQALLDRLLVVRGDDPISKEA 557 [157][TOP] >UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus RepID=A1YIB9_ALLMA Length = 1008 Score = 65.9 bits (159), Expect = 1e-09 Identities = 33/88 (37%), Positives = 55/88 (62%) Frame = +2 Query: 89 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 268 +V +LL +E+ QL++DR+ LRH +F G+A+ PL NI+R+IWNA+ +F + + S+L Sbjct: 855 EVQQLLDQEYRQLEEDRERLRH-IFPRGDARWPLPGNIQRIIWNAQNLFKIDKTKPSNLH 913 Query: 269 PSKIVRGVELLLHRTRVLTSDEDAEVDA 352 P +V V L + V+ + V+A Sbjct: 914 PEYVVNEVRKLCDKLMVIPGTDKISVEA 941 [158][TOP] >UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis thaliana RepID=RPB1_ARATH Length = 1840 Score = 65.9 bits (159), Expect = 1e-09 Identities = 37/108 (34%), Positives = 60/108 (55%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E+ N YLS L D+ ++ ++ E+++L+ DR L E+ G++ PL VNI+R Sbjct: 924 ENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKR 983 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 IWNA++ F + SD+ P +IV V+ L R V+ D+ V+A Sbjct: 984 HIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDDALSVEA 1031 [159][TOP] >UniRef100_Q9BNJ6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Pachymerium ferrugineum RepID=Q9BNJ6_9MYRI Length = 238 Score = 65.5 bits (158), Expect = 2e-09 Identities = 31/90 (34%), Positives = 53/90 (58%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + D+ + L KEW LKKDR+ LR VF G++K+ L N+ R+IWNA++IF + Sbjct: 94 VKDLMGSSHIVTQLEKEWETLKKDREVLR-SVFPKGDSKVVLPCNLPRMIWNAQKIFHIN 152 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +DL+P +++ GV L + ++ ++ Sbjct: 153 TRTPTDLTPLRVLDGVRELSSKIIIVPGED 182 [160][TOP] >UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae RepID=C3ZES3_BRAFL Length = 1934 Score = 65.5 bits (158), Expect = 2e-09 Identities = 37/103 (35%), Positives = 58/103 (56%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + +I S + + E+ QL+ DRD LR V +TG+AK+ L N+ R+IWNA++ Sbjct: 930 LQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQK 988 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIA 358 IF V +DL P K+V GV L + ++ D+ + A A Sbjct: 989 IFHVNTRAPTDLHPIKVVEGVRDLSRKLVIVKGDDPISIQAQA 1031 [161][TOP] >UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus regenfussi RepID=A9QMG9_9BILA Length = 620 Score = 65.5 bits (158), Expect = 2e-09 Identities = 29/74 (39%), Positives = 51/74 (68%) Frame = +2 Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292 EWAQL++DR LR ++F G+AK+ L N++RLIWNA+++F V +++L+P +++ GV Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQKVFHVETRKQTELNPLRVIEGV 214 Query: 293 ELLLHRTRVLTSDE 334 L + ++ D+ Sbjct: 215 RELSKKLVIVGGDD 228 [162][TOP] >UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN Length = 1935 Score = 65.5 bits (158), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 899 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 957 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 958 IFHINPRLPSDLHPIKVVEGVKKLSKKLVIVNGDD 992 [163][TOP] >UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum RepID=A1YIB6_9FUNG Length = 1018 Score = 65.5 bits (158), Expect = 2e-09 Identities = 33/96 (34%), Positives = 53/96 (55%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 L D+ +L +E+ QL DR LR +F +G+ PL N+ RL+WNA+ IF + Sbjct: 856 LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWNAQNIFHID 915 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 + S+L P +I+ GV+LL+ R V+ + +A Sbjct: 916 KRKPSNLHPLQIIEGVKLLIDRLIVVRGSDKLSNEA 951 [164][TOP] >UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae RepID=UPI000186501C Length = 1956 Score = 65.1 bits (157), Expect = 2e-09 Identities = 37/103 (35%), Positives = 58/103 (56%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + +I S + + E+ QL+ DRD LR V +TG+AK+ L N+ R+IWNA++ Sbjct: 930 LQEDIVREITSDARLQTEIEAEFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQK 988 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIA 358 IF V +DL P K+V GV L + ++ D+ + A A Sbjct: 989 IFHVNTRAPTDLHPIKVVEGVRDLSKKLVIVKGDDPISIQAQA 1031 [165][TOP] >UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase II subunit A) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Equus caballus RepID=UPI0001796DD3 Length = 1834 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [166][TOP] >UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2 Length = 1970 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [167][TOP] >UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648 Length = 1913 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [168][TOP] >UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Macaca mulatta RepID=UPI0000D9E16B Length = 1193 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [169][TOP] >UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2C Length = 1888 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [170][TOP] >UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2B Length = 1892 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029 [171][TOP] >UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2A Length = 1896 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029 [172][TOP] >UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B29 Length = 1891 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 903 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 961 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 962 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 996 [173][TOP] >UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B28 Length = 1908 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 979 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1013 [174][TOP] >UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 18 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B27 Length = 1831 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [175][TOP] >UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 17 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B26 Length = 1684 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 924 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 983 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1017 [176][TOP] >UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 16 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B25 Length = 1752 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 924 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 983 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1017 [177][TOP] >UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B24 Length = 1924 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029 [178][TOP] >UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 14 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B23 Length = 1653 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 907 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 966 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1000 [179][TOP] >UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 13 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B22 Length = 1722 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 907 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 966 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1000 [180][TOP] >UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B21 Length = 1922 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [181][TOP] >UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B20 Length = 1923 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 935 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 993 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 994 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1028 [182][TOP] >UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 10 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1F Length = 1840 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 930 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 989 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1023 [183][TOP] >UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 9 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1E Length = 1851 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 930 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 989 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1023 [184][TOP] >UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris RepID=UPI00005A0B1D Length = 1764 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 952 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 1010 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 1011 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1045 [185][TOP] >UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 5 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B19 Length = 1693 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 979 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1013 [186][TOP] >UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B17 Length = 1788 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [187][TOP] >UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B16 Length = 1922 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [188][TOP] >UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus RepID=UPI0001B7A25C Length = 1968 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1029 [189][TOP] >UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus RepID=UPI0001B7A25B Length = 1932 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [190][TOP] >UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8 Length = 1970 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [191][TOP] >UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus familiaris RepID=UPI0001951285 Length = 1969 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [192][TOP] >UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE Length = 1966 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [193][TOP] >UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum RepID=Q30BD9_9EUKA Length = 1852 Score = 65.1 bits (157), Expect = 2e-09 Identities = 38/104 (36%), Positives = 55/104 (52%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 ++ + I D LL E+ QL DR LR + T E PL VN++RLIWNA+ Sbjct: 920 FMDADIVQKIRDSADDRILLEAEFKQLMNDRTALRESI-PTDENTWPLPVNLKRLIWNAQ 978 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIA 358 +IF + SDL P I++GV LL + V+ ++ V+A A Sbjct: 979 KIFHIDVRKPSDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEAQA 1022 [194][TOP] >UniRef100_Q9NJJ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scolopendra polymorpha RepID=Q9NJJ7_SCOPO Length = 734 Score = 65.1 bits (157), Expect = 2e-09 Identities = 29/90 (32%), Positives = 56/90 (62%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + ++ ++ L KEW LK+DR+ LR +VF G++K+ L N+ R+IWNA++IF + Sbjct: 590 VKELMGSANIVGELEKEWETLKRDRETLR-QVFPKGDSKVVLPCNLPRMIWNAQKIFHIN 648 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +DL+P +++ GV L+ + ++ ++ Sbjct: 649 TRVPTDLNPFRVIEGVRELVKKIVIVQGED 678 [195][TOP] >UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7Q3C6_ANOGA Length = 1878 Score = 65.1 bits (157), Expect = 2e-09 Identities = 29/94 (30%), Positives = 58/94 (61%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + ++ V + + E+ QL +DR+ LR ++F G++K+ L N++R+IWN ++I Sbjct: 925 NEDVIKELTETSSVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F + + +DLSP K+++GV LL R ++ + Sbjct: 984 FHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTD 1017 [196][TOP] >UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermiformis RepID=A9QMR5_9BILA Length = 524 Score = 65.1 bits (157), Expect = 2e-09 Identities = 33/104 (31%), Positives = 62/104 (59%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 +++ N Y + + D+ + + + EW QL++DR LR ++F G++K+ L N++ Sbjct: 126 EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 183 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 RLIWNA++IF V ++S L+P +++ GV + + V+ ED Sbjct: 184 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED 226 [197][TOP] >UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus redivivus RepID=A9QMH0_PANRE Length = 636 Score = 65.1 bits (157), Expect = 2e-09 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 3/114 (2%) Frame = +2 Query: 2 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 172 L E HL + S S + ++ + +V E L +EW +L +DR LR E+F G Sbjct: 125 LFEKKYHLNIHDDKEMSRLYSVDVIRELRNDPEVQEKLEQEWRKLCEDRAMLR-EIFPKG 183 Query: 173 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +AK L N++RLIWNA++IF V ++L P+ I+ GV L R +++ + Sbjct: 184 DAKTVLPCNLQRLIWNAQKIFHVDLRKPTELHPATIIEGVRKLGDRLVIVSGTD 237 [198][TOP] >UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis RepID=A9QMF4_9BILA Length = 597 Score = 65.1 bits (157), Expect = 2e-09 Identities = 33/104 (31%), Positives = 62/104 (59%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 +++ N Y + + D+ + + + EW QL++DR LR ++F G++K+ L N++ Sbjct: 94 EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 151 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 RLIWNA++IF V ++S L+P +++ GV + + V+ ED Sbjct: 152 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED 194 [199][TOP] >UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina RepID=A9QMF3_9BILA Length = 626 Score = 65.1 bits (157), Expect = 2e-09 Identities = 30/94 (31%), Positives = 57/94 (60%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 S+ + D+ D + + EW QL++DR LR ++F G++K+ L N++RLIWNA++I Sbjct: 140 SEEVVRDLQGSTDALKEVEDEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKI 198 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F V + L+P +++ GV + + +++ D+ Sbjct: 199 FKVETRKVTALNPLRVIEGVRNVSKKLVIVSGDD 232 [200][TOP] >UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres RepID=A9QMF2_9PELO Length = 629 Score = 65.1 bits (157), Expect = 2e-09 Identities = 36/107 (33%), Positives = 62/107 (57%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL + S Y S+ + D+ + + +EW QL++DR LR ++F GE+K+ L Sbjct: 128 DLSDERSLRRVY-SEDVVRDLLGSSSALKEVEEEWQQLEEDRRLLR-KIFPKGESKVVLP 185 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 N++RLIWNA++IF V + L+P ++V+GV L + ++ D+ Sbjct: 186 CNLQRLIWNAQKIFKVETRKVTALNPLRVVQGVRDLSKKLIIVMGDD 232 [201][TOP] >UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN Length = 1970 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [202][TOP] >UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis RepID=Q1E2G9_COCIM Length = 1750 Score = 65.1 bits (157), Expect = 2e-09 Identities = 41/107 (38%), Positives = 62/107 (57%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL E+S SP L + A +I +V L +EW QL+KDR FLR V K E + L Sbjct: 923 DLMDPENSLSPELLEQA-TEITGDMEVQRYLDEEWEQLQKDRAFLR-SVAKEDEEMMQLP 980 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +N++R++ +AK F +R+ SDL P+ ++ V+ LL R V+ D+ Sbjct: 981 INVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRLVVVRGDD 1027 [203][TOP] >UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta SOWgp RepID=C5PAJ4_COCP7 Length = 1746 Score = 65.1 bits (157), Expect = 2e-09 Identities = 41/107 (38%), Positives = 62/107 (57%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL E+S SP L + A +I +V L +EW QL+KDR FLR V K E + L Sbjct: 923 DLMDPENSLSPELLEQA-TEITGDMEVQRYLDEEWEQLQKDRAFLR-SVAKEDEEMMQLP 980 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +N++R++ +AK F +R+ SDL P+ ++ V+ LL R V+ D+ Sbjct: 981 INVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRLVVVRGDD 1027 [204][TOP] >UniRef100_C3U0C3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xeromyces bisporus RepID=C3U0C3_9EURO Length = 618 Score = 65.1 bits (157), Expect = 2e-09 Identities = 34/95 (35%), Positives = 57/95 (60%) Frame = +2 Query: 68 NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 247 N+I +V + L +EW QL KDR+FLR V K E + L +N++R++ +AK F +R+ Sbjct: 464 NEIKGDMEVQKYLDEEWEQLVKDREFLR-SVAKEDEEMMQLPINVQRILESAKTTFRIRE 522 Query: 248 NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 SDL P++++ V LL R ++ ++D +A Sbjct: 523 GTISDLHPAEVIPQVRALLDRLVIVRGNDDISREA 557 [205][TOP] >UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB RepID=A1YIB1_9BASI Length = 1013 Score = 65.1 bits (157), Expect = 2e-09 Identities = 38/93 (40%), Positives = 52/93 (55%) Frame = +2 Query: 56 QAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIF 235 Q L+D S + +L KEW QL KDR LR +F G + PL VNI R+I NA++IF Sbjct: 850 QVGLDD--SSAALQSVLDKEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQIF 907 Query: 236 DVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 + SDL P I++ V L +R V+ D+ Sbjct: 908 HIDFRKPSDLPPPDIIQMVNDLCNRLIVVRGDD 940 [206][TOP] >UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus RepID=RPB1_MOUSE Length = 1970 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [207][TOP] >UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires RepID=RPB1_HUMAN Length = 1970 Score = 65.1 bits (157), Expect = 2e-09 Identities = 32/95 (33%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1027 [208][TOP] >UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SF83_TETNG Length = 1745 Score = 64.7 bits (156), Expect = 3e-09 Identities = 29/81 (35%), Positives = 52/81 (64%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 808 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 866 Query: 230 IFDVRQNDRSDLSPSKIVRGV 292 IF + +DLSP ++V G+ Sbjct: 867 IFRINTRTPTDLSPLRVVEGI 887 [209][TOP] >UniRef100_Q1ACS9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Ruschia herrei RepID=Q1ACS9_9CARY Length = 240 Score = 64.7 bits (156), Expect = 3e-09 Identities = 33/108 (30%), Positives = 61/108 (56%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E+ Y+ + ++D+ + + + E +L+ DR L E+ TG+ PL VN++R Sbjct: 74 ENWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPLPVNLKR 133 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 L+WNA++ F V ++SD+ P +IV V+ L R +V+ D+ ++A Sbjct: 134 LLWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGDDFLSIEA 181 [210][TOP] >UniRef100_Q9BNN0 RNA polymerase II largest subunit (Fragment) n=1 Tax=Geophilus vittatus RepID=Q9BNN0_9MYRI Length = 222 Score = 64.7 bits (156), Expect = 3e-09 Identities = 30/90 (33%), Positives = 54/90 (60%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + +++ + L KEW LKKDR+ LR VF G++K+ L N+ R+IWNA++IF + Sbjct: 78 VKELNGSAHIVSQLDKEWEFLKKDRETLR-SVFPKGDSKVVLPCNLPRMIWNAQKIFHIN 136 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +DL+P +++ GV L + ++ ++ Sbjct: 137 TRTPTDLNPLRVLEGVRELSSKLIIVPGED 166 [211][TOP] >UniRef100_Q9NJK2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polyxenus fasciculatus RepID=Q9NJK2_9MYRI Length = 751 Score = 64.3 bits (155), Expect = 4e-09 Identities = 33/96 (34%), Positives = 55/96 (57%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ L +EW LK DR+ LR +F G++K+ L N++R+IWNA++I Sbjct: 586 NEEIVKDLFGSASAVGELEREWXTLKLDREVLR-TIFPKGDSKVVLPCNLQRMIWNAQKI 644 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340 F + +DLSP +++ GV L + V+ EDA Sbjct: 645 FHINVRTPTDLSPLRVIEGVRDLTKKL-VIVVGEDA 679 [212][TOP] >UniRef100_Q9BNN8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Craterostigmus tasmanianus RepID=Q9BNN8_9MYRI Length = 222 Score = 64.3 bits (155), Expect = 4e-09 Identities = 31/90 (34%), Positives = 54/90 (60%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + D+ +V L EW L KDR+ LR VF G++K+ L N++R+IWNA++IF + Sbjct: 78 VKDLLGSANVVGDLELEWESLCKDREVLR-TVFPKGDSKVVLPCNLQRMIWNAQKIFHIN 136 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +DL+PS+++ GV L + ++ ++ Sbjct: 137 IRSPTDLNPSRVIEGVRELSKKIIIVVGED 166 [213][TOP] >UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata RepID=P91819_ZELPU Length = 629 Score = 64.3 bits (155), Expect = 4e-09 Identities = 35/93 (37%), Positives = 55/93 (59%) Frame = +2 Query: 59 AALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFD 238 + + ++ D + EW QL++DR LR ++F G+AK+ L N++RLIWNA +IF Sbjct: 139 SVVRELLGSADALREVESEWQQLEEDRRLLR-KIFPKGDAKVHLPCNLKRLIWNAHKIFH 197 Query: 239 VRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 V DL+P ++V GV L++ V+ S ED Sbjct: 198 VDLKKPVDLNPLRVVEGVR-ELNKKLVIVSGED 229 [214][TOP] >UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum RepID=A9QMR7_9BILA Length = 614 Score = 64.3 bits (155), Expect = 4e-09 Identities = 36/76 (47%), Positives = 48/76 (63%) Frame = +2 Query: 110 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 289 +EW QL KDR LR E+F G+AK+ L N++RLIWNA++IF V LSP +++ G Sbjct: 149 EEWKQLVKDRRTLR-EIFPKGDAKVVLPCNVQRLIWNAQKIFHVEIRRPVSLSPLRVIEG 207 Query: 290 VELLLHRTRVLTSDED 337 V L R V+ S ED Sbjct: 208 VRELTARL-VIVSGED 222 [215][TOP] >UniRef100_A9QMQ0 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus RepID=A9QMQ0_PRIPA Length = 181 Score = 64.3 bits (155), Expect = 4e-09 Identities = 29/60 (48%), Positives = 43/60 (71%) Frame = +2 Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292 EW QL++DR+ LR +F G+AK+ L N++RLIWNA++IF V +DLSP +++ GV Sbjct: 57 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 115 [216][TOP] >UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus RepID=A9QMF6_PRIPA Length = 583 Score = 64.3 bits (155), Expect = 4e-09 Identities = 29/60 (48%), Positives = 43/60 (71%) Frame = +2 Query: 113 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 292 EW QL++DR+ LR +F G+AK+ L N++RLIWNA++IF V +DLSP +++ GV Sbjct: 127 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 185 [217][TOP] >UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48673 Length = 1880 Score = 63.9 bits (154), Expect = 5e-09 Identities = 36/96 (37%), Positives = 59/96 (61%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ + V L KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++I Sbjct: 929 NEKIVKDVVANAHVHLELEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQI 987 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340 F + S+L PS ++ GV L + V+ EDA Sbjct: 988 FHINTRLPSELHPSFVLEGVR-DLKKKLVIVKGEDA 1022 [218][TOP] >UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48672 Length = 1913 Score = 63.9 bits (154), Expect = 5e-09 Identities = 36/96 (37%), Positives = 59/96 (61%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ + V L KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++I Sbjct: 935 NEKIVKDVVANAHVHLELEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQI 993 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340 F + S+L PS ++ GV L + V+ EDA Sbjct: 994 FHINTRLPSELHPSFVLEGVR-DLKKKLVIVKGEDA 1028 [219][TOP] >UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48671 Length = 1921 Score = 63.9 bits (154), Expect = 5e-09 Identities = 36/96 (37%), Positives = 59/96 (61%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ + V L KE+ QLK+DR+ LR ++F GE+K+ L N++R+IWNA++I Sbjct: 935 NEKIVKDVVANAHVHLELEKEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQI 993 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 340 F + S+L PS ++ GV L + V+ EDA Sbjct: 994 FHINTRLPSELHPSFVLEGVR-DLKKKLVIVKGEDA 1028 [220][TOP] >UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 8 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1C Length = 1719 Score = 63.9 bits (154), Expect = 5e-09 Identities = 31/90 (34%), Positives = 56/90 (62%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + Sbjct: 933 VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 SDL P K+V GV+ L + ++ D+ Sbjct: 992 PRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1021 [221][TOP] >UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 7 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1B Length = 1858 Score = 63.9 bits (154), Expect = 5e-09 Identities = 31/90 (34%), Positives = 56/90 (62%) Frame = +2 Query: 65 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 244 + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + Sbjct: 933 VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991 Query: 245 QNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 SDL P K+V GV+ L + ++ D+ Sbjct: 992 PRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1021 [222][TOP] >UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum RepID=B7SNX4_PEA Length = 1010 Score = 63.9 bits (154), Expect = 5e-09 Identities = 34/102 (33%), Positives = 56/102 (54%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E+ Y+ + + D+ + + + E +L DR L E+ TG++ LPL VN++R Sbjct: 841 ENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKR 900 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 LIWNA++ F V SD+ P +IV ++ L R RV+ D+ Sbjct: 901 LIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVPGDD 942 [223][TOP] >UniRef100_A9QMR2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis blumi RepID=A9QMR2_9BILA Length = 284 Score = 63.9 bits (154), Expect = 5e-09 Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Frame = +2 Query: 80 SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGE-AKLPLAVNIERLIWNAKRIFDVRQNDR 256 S D + + +EWAQL++DR LR ++F TG+ K+ L N++RLIWNA++IF V Sbjct: 154 STSDALKKVEEEWAQLQEDRRLLR-KIFPTGDDRKVVLPCNLKRLIWNAQKIFHVETRKP 212 Query: 257 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 + LSP +++ G++ L + +++ D+ A Sbjct: 213 TSLSPLRVIDGIKELSKKLIIVSGDDSISKQA 244 [224][TOP] >UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae RepID=A9QMG0_OSCTI Length = 629 Score = 63.9 bits (154), Expect = 5e-09 Identities = 31/94 (32%), Positives = 57/94 (60%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 S+ ++ + + E + EWAQL++DR LR + F G+ K+ L N++RLIWNA++I Sbjct: 144 SEDLYRELQNEPEAIEEIENEWAQLEEDRRLLR-KTFPNGDNKVVLPCNLQRLIWNAQKI 202 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F V + + L+P ++RGV+ L + ++ ++ Sbjct: 203 FHVETREVTSLNPLAVIRGVKNLSDKLIIVGGED 236 [225][TOP] >UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis RepID=Q2PYR1_9FUNG Length = 1022 Score = 63.9 bits (154), Expect = 5e-09 Identities = 37/109 (33%), Positives = 60/109 (55%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 ++S S L + L ++ +V +L E+ QLK+DR LR + + GEA+ P+ VN+ Sbjct: 852 EKSFPSGTLEFSVLKNVEGNDEVQRVLDDEYEQLKEDRHILRKFIARDGEARRPMPVNLP 911 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 RLI NA++IF + S+LSP +IV + L VL ++ +A Sbjct: 912 RLIKNAQQIFHIDHRKPSNLSPVEIVEKIRKLADSLIVLRGNDSLTREA 960 [226][TOP] >UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JY44_UNCRE Length = 1747 Score = 63.9 bits (154), Expect = 5e-09 Identities = 39/107 (36%), Positives = 61/107 (57%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL E S SP + + A +I +V L +EW QL+KDR FLR K E + L Sbjct: 875 DLMDPEKSLSPEILEQA-TEITGDIEVQRYLDEEWEQLQKDRVFLRSAA-KEDEEMMQLP 932 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +N++R++ +AK F +R+ SDL P++++ V+ LL R V+ D+ Sbjct: 933 INVQRILESAKTTFRIREGTISDLHPAEVIPQVQALLERLVVVRGDD 979 [227][TOP] >UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1A Length = 1767 Score = 63.5 bits (153), Expect = 7e-09 Identities = 32/97 (32%), Positives = 60/97 (61%), Gaps = 2/97 (2%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV--NIERLIWNA 223 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+P+ + N+ R+IWNA Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVPVVLPCNLLRMIWNA 978 Query: 224 KRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 ++IF + SDL P K+V GV+ L + ++ D+ Sbjct: 979 QKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD 1015 [228][TOP] >UniRef100_Q1ACT2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nepenthes ampullaria RepID=Q1ACT2_9CARY Length = 240 Score = 63.5 bits (153), Expect = 7e-09 Identities = 35/108 (32%), Positives = 57/108 (52%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E N Y+ + D+ + + + E +L+ DR L E+ TG+ PL VN+ R Sbjct: 74 EDWNPNYMLPDHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLTR 133 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 LIWNA++ F + RSD+ P +IV V+ L R +V+ D+ ++A Sbjct: 134 LIWNAQKTFKIDLRRRSDMHPMEIVEAVDKLQERLKVVPGDDFLSIEA 181 [229][TOP] >UniRef100_O02471 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scutigera coleoptrata RepID=O02471_SCUCO Length = 582 Score = 63.5 bits (153), Expect = 7e-09 Identities = 27/94 (28%), Positives = 55/94 (58%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + ++ + L +EW L+KDR+ LR VF G++K+ L N++R+IWNA++I Sbjct: 434 NEDVVKELMGSAHIVNELEREWTMLQKDREALR-SVFPKGDSKIVLPCNLQRMIWNAQKI 492 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F + +DL+P +++ G L + ++ ++ Sbjct: 493 FHINLRSPTDLNPLRVIEGTRELSKKIIIVQGED 526 [230][TOP] >UniRef100_Q0PQ08 DNA-directed RNA polymerase (Fragment) n=1 Tax=Echinoplaca strigulacea RepID=Q0PQ08_9LECA Length = 1017 Score = 63.5 bits (153), Expect = 7e-09 Identities = 36/95 (37%), Positives = 57/95 (60%) Frame = +2 Query: 68 NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 247 N ++ DV +L E+ +L++ R +LR + E +LP+ VNI R+I AKRIF +R Sbjct: 855 NIFNADSDVQDLFDAEFQKLEEARLYLRKT--RGSEDRLPIPVNITRIIETAKRIFKIRP 912 Query: 248 NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +RSDL P++++ V LL R V+ D+ V+A Sbjct: 913 GNRSDLQPAEVIPAVIALLDRLIVVQGDDPISVEA 947 [231][TOP] >UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis RepID=C5GKA7_AJEDR Length = 1746 Score = 63.5 bits (153), Expect = 7e-09 Identities = 42/117 (35%), Positives = 66/117 (56%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL E + SP + + A +I +V + L +EW QL KDR F+R V K E + L Sbjct: 923 DLMDPERTLSPNVLEQA-TEIAGDIEVQKYLDEEWEQLLKDRAFMR-SVAKEDEEMMQLP 980 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364 +N++R++ +AK IF +R+ SDL P++++ + LL R V+ D D I+RE Sbjct: 981 INVQRILESAKTIFRIREGAISDLHPAEVIPQIRALLDRLIVVRGD-----DVISRE 1032 [232][TOP] >UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis domestica RepID=UPI0000F2BF13 Length = 1932 Score = 63.2 bits (152), Expect = 9e-09 Identities = 31/95 (32%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ ++ Sbjct: 993 IFHINPRLPSDLHPIKVVDGVKELSKKLVIVNGED 1027 [233][TOP] >UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis domestica RepID=UPI0000F2BF12 Length = 1970 Score = 63.2 bits (152), Expect = 9e-09 Identities = 31/95 (32%), Positives = 58/95 (61%) Frame = +2 Query: 50 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 229 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 230 IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 IF + SDL P K+V GV+ L + ++ ++ Sbjct: 993 IFHINPRLPSDLHPIKVVDGVKELSKKLVIVNGED 1027 [234][TOP] >UniRef100_Q71ET4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda RepID=Q71ET4_AMBTC Length = 1013 Score = 63.2 bits (152), Expect = 9e-09 Identities = 34/109 (31%), Positives = 60/109 (55%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 QE+ + Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++ Sbjct: 843 QENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLK 902 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 RLIWNA+++F V SD+ P +IV V+ L R +V+ D+ ++A Sbjct: 903 RLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEA 951 [235][TOP] >UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe tomentosa RepID=Q1ACT8_9MAGN Length = 240 Score = 63.2 bits (152), Expect = 9e-09 Identities = 32/105 (30%), Positives = 57/105 (54%) Frame = +2 Query: 38 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 217 N Y+ + D+ + + + E +L+ DR L E+ TG+ LP+ VN++RLIW Sbjct: 77 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136 Query: 218 NAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 NA++ F V SD+ P +IV ++ L R +V+ ++ ++A Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQERLKVVPGEDSLSIEA 181 [236][TOP] >UniRef100_B7SNX1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana tabacum RepID=B7SNX1_TOBAC Length = 1010 Score = 63.2 bits (152), Expect = 9e-09 Identities = 34/105 (32%), Positives = 58/105 (55%) Frame = +2 Query: 38 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 217 N Y+ A+ D+ + ++ + E +L+ DR L E+ TG+ PL VNI+RL+ Sbjct: 844 NPSYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVL 903 Query: 218 NAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 NA++ F + RSD+ P +IV V+ L R +V+ D+ ++A Sbjct: 904 NAQKTFKIDFRRRSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEA 948 [237][TOP] >UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata RepID=A9QMF1_9PELO Length = 605 Score = 63.2 bits (152), Expect = 9e-09 Identities = 31/94 (32%), Positives = 55/94 (58%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 ++ + D+ + + + EW QL++DR LR ++F G+ K+ L N++RLIWNA++I Sbjct: 121 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 179 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 F V S L+P K+V GV L + ++ ++ Sbjct: 180 FKVETRKASSLNPLKVVSGVRELSKKLIIVCGED 213 [238][TOP] >UniRef100_C3U0B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arachnomyces glareosus RepID=C3U0B2_9EURO Length = 993 Score = 63.2 bits (152), Expect = 9e-09 Identities = 39/113 (34%), Positives = 64/113 (56%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL E S P + + A +I +V + L +EW QL+KDR FLR V E + L Sbjct: 822 DLMDPERSLGPEVLEQA-TEIAGDVEVQKYLDEEWEQLQKDRTFLR-SVANQDEEMMQLP 879 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +N++R++ +AK F +R + SDL PS+++ V+ LL R V+ +++ +A Sbjct: 880 INVQRILESAKTTFRIRDGNISDLHPSEVIPQVQALLDRLVVVRGNDEISREA 932 [239][TOP] >UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR RepID=C0NEY2_AJECG Length = 1234 Score = 63.2 bits (152), Expect = 9e-09 Identities = 42/117 (35%), Positives = 66/117 (56%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL + + SP + + A +I +V + L +EW QL KDR F+R V K E + L Sbjct: 410 DLMDPDRTLSPNVLEQA-TEIAGDIEVQKYLDEEWEQLLKDRAFMR-SVAKEDEEMMQLP 467 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIARE 364 +N++R++ +AK IF +R+ SDL P++++ V LL R V+ D D I+RE Sbjct: 468 INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLERLVVVRGD-----DVISRE 519 [240][TOP] >UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO Length = 1752 Score = 63.2 bits (152), Expect = 9e-09 Identities = 34/104 (32%), Positives = 58/104 (55%) Frame = +2 Query: 23 LQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 202 +++ S S Y+ N I + V +LL +E+ QL DR+ L +F G+A+ PL VN+ Sbjct: 908 MEDRSLSLYME----NSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNV 963 Query: 203 ERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 +R+I NA +IF + +DL PS I+ G+ L+ + + + Sbjct: 964 QRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSD 1007 [241][TOP] >UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis palmarum RepID=O01375_9BILA Length = 631 Score = 62.8 bits (151), Expect = 1e-08 Identities = 31/76 (40%), Positives = 50/76 (65%) Frame = +2 Query: 110 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 289 +EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++ G Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 217 Query: 290 VELLLHRTRVLTSDED 337 + L + V+ S ED Sbjct: 218 IR-ELSKKLVIVSGED 232 [242][TOP] >UniRef100_C0JPA2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichoplax adhaerens RepID=C0JPA2_TRIAD Length = 625 Score = 62.8 bits (151), Expect = 1e-08 Identities = 37/97 (38%), Positives = 55/97 (56%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 YL + I + +V E L E+ QL KDR+ +R + + G++++ L VN+ RLIWNA+ Sbjct: 460 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 518 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +IF V SDL P K++ V L R V+ ED Sbjct: 519 KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED 554 [243][TOP] >UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3RM26_TRIAD Length = 1784 Score = 62.8 bits (151), Expect = 1e-08 Identities = 37/97 (38%), Positives = 55/97 (56%) Frame = +2 Query: 47 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 226 YL + I + +V E L E+ QL KDR+ +R + + G++++ L VN+ RLIWNA+ Sbjct: 921 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 979 Query: 227 RIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 +IF V SDL P K++ V L R V+ ED Sbjct: 980 KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED 1015 [244][TOP] >UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus RepID=A9QMH1_9BILA Length = 616 Score = 62.8 bits (151), Expect = 1e-08 Identities = 32/95 (33%), Positives = 56/95 (58%) Frame = +2 Query: 53 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 232 + + + ++ + + EW QL++DR LR ++F GE+K+ L N++RLIWNA++I Sbjct: 144 ADSVVKELMGNAEAMREVEAEWQQLEEDRRLLR-KIFPKGESKVHLPCNLKRLIWNAQKI 202 Query: 233 FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 337 F V DL+P +++ GV L + ++ S ED Sbjct: 203 FHVDLRKTVDLNPVRVIEGVR-ELSKKLIIVSGED 236 [245][TOP] >UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15 RepID=A9QMG8_9BILA Length = 587 Score = 62.8 bits (151), Expect = 1e-08 Identities = 31/102 (30%), Positives = 58/102 (56%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E S + + D+ S + + EW QL++DR LR ++F G++K+ L N++R Sbjct: 120 ERSLRRMFTDEVVRDLQSTPESLKEXESEWXQLEEDRXLLR-KIFPKGDSKVVLPCNLQR 178 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDE 334 LIWNA++IF V ++L+P +++ GV L + ++ ++ Sbjct: 179 LIWNAQKIFHVETRKXTELNPLRVIEGVRDLSKKLVIVXGED 220 [246][TOP] >UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis palmarum RepID=A9QMG6_9BILA Length = 633 Score = 62.8 bits (151), Expect = 1e-08 Identities = 31/76 (40%), Positives = 50/76 (65%) Frame = +2 Query: 110 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 289 +EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++ G Sbjct: 163 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 221 Query: 290 VELLLHRTRVLTSDED 337 + L + V+ S ED Sbjct: 222 IR-ELSKKLVIVSGED 236 [247][TOP] >UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus RepID=A1CNZ4_ASPCL Length = 1765 Score = 62.8 bits (151), Expect = 1e-08 Identities = 40/113 (35%), Positives = 62/113 (54%) Frame = +2 Query: 14 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 193 DL E S P + + A N+I +V L +EW QL KDR FLR V K + + L Sbjct: 922 DLMDPERSLGPEVLEQA-NEIAGDVEVQRYLDEEWEQLLKDRAFLR-SVVKEDDEMMQLP 979 Query: 194 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 +N++R++ A+ F +R+ SDL P+++V V+ LL R V+ D+ +A Sbjct: 980 INVQRILETARSTFRIREGAISDLHPAEVVPQVQSLLDRLLVVRGDDPISHEA 1032 [248][TOP] >UniRef100_Q71ET8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Welwitschia mirabilis RepID=Q71ET8_WELMI Length = 1013 Score = 62.4 bits (150), Expect = 2e-08 Identities = 31/109 (28%), Positives = 59/109 (54%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 QE+ N Y+ + D+ + + + E L+ DR L E+ +G+ PL VN++ Sbjct: 843 QENWNPGYMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGDNSWPLPVNLK 902 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 RLIWNA+++F + SD+ P +I+ ++ L R +V+ ++ ++A Sbjct: 903 RLIWNAQKLFKIDPRKASDMHPMEIIDAIDKLQERLKVVPGNDPLSIEA 951 [249][TOP] >UniRef100_Q2TUN7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Podocarpus macrophyllus RepID=Q2TUN7_9CONI Length = 1013 Score = 62.4 bits (150), Expect = 2e-08 Identities = 32/109 (29%), Positives = 59/109 (54%) Frame = +2 Query: 26 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 205 QE+ N Y+ + D+ + + + E +L+ DR L E+ +G+ P+ VN++ Sbjct: 843 QENWNPIYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGTEIAPSGDNSCPMPVNLK 902 Query: 206 RLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 RLIWNA++ F + SD+ P +IV ++ L R +V+ D+ ++A Sbjct: 903 RLIWNAQKTFKIDPRKPSDMHPMEIVEAIDRLQERLKVVPGDDLISIEA 951 [250][TOP] >UniRef100_Q1ACU1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia scandens RepID=Q1ACU1_9MAGN Length = 240 Score = 62.4 bits (150), Expect = 2e-08 Identities = 34/108 (31%), Positives = 59/108 (54%) Frame = +2 Query: 29 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 208 E+ N Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKR 133 Query: 209 LIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDA 352 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ ++A Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEA 181