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[1][TOP] >UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis RepID=O04142_PORYE Length = 1685 Score = 342 bits (876), Expect = 1e-92 Identities = 167/168 (99%), Positives = 167/168 (99%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP Sbjct: 1441 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 1500 Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS Sbjct: 1501 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 1560 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 PRFGGGL GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY Sbjct: 1561 PRFGGGLCGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 1608 [2][TOP] >UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera RepID=O09451_9FLOR Length = 1732 Score = 82.4 bits (202), Expect = 2e-14 Identities = 72/191 (37%), Positives = 88/191 (46%), Gaps = 24/191 (12%) Frame = +2 Query: 2 DAAASARIARSPAMPESERG---YTPGREGQRTPGR--AFDAAMTPTYAYSPARARTPGG 166 DA AS + +SPA + G ++P R G TPGR AFDA TP YSPA TP Sbjct: 1416 DAQASMGLGQSPAGNRTYEGASVWSPAR-GDATPGRKKAFDARATPGLLYSPAAWGTPLR 1474 Query: 167 TAFSPAYTGPGGFSPINATASFSPI-MSSADAAGRATPGRMTPGRSPAGRFTPRMSP--- 334 SP A+FSP M+ A G G +TP +SP +T +SP Sbjct: 1475 PRTEQGLDQQ--MSPSADGAAFSPTPMTPGGAGGGGGMGGLTPLQSPGREYTVPLSPGGG 1532 Query: 335 ------------ASPGYAAMSPRFG--GGLGGGPAGGAGAYAPASPAYMATSPGMG-YSP 469 +SPGYA R GG G G +G +APASPAY TSPG Y+ Sbjct: 1533 GTSPFYSQSPYASSPGYAQSPGRMQSPGGAGAYGIGSSGTFAPASPAYRPTSPGPSPYAA 1592 Query: 470 STPALAVSSPG 502 +PA SPG Sbjct: 1593 QSPA---QSPG 1600 Score = 56.6 bits (135), Expect = 9e-07 Identities = 59/178 (33%), Positives = 77/178 (43%), Gaps = 20/178 (11%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 +PA P Y P G +P A A +P YSP ++R A A + GG Sbjct: 1574 APASP----AYRPTSPGP-SPYAAQSPAQSPGVQYSPDKSRVQVQRAPPTAPSAAGG--- 1625 Query: 212 INATASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ S+SP S + G A+PG +PG SP+ SP+SP AA SP Sbjct: 1626 -GASRSYSPSSPSYNGRGAASPGANYVAASPGYSPSS--PGAYSPSSP--AAFSP----- 1675 Query: 380 LGGGPAGGAGAYAPASPAYMAT----------------SPGMGYSPSTPALAVSSPGY 505 PA AG Y+P++PAY A S G SPS+P + SSP Y Sbjct: 1676 --SSPA--AGGYSPSTPAYTANAAANQYSYARSPRYPPSYANGTSPSSPQYSPSSPQY 1729 [3][TOP] >UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1A Length = 1767 Score = 79.3 bits (194), Expect = 1e-13 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Frame = +2 Query: 119 TPTY-AYSPARARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP 292 TP Y A+SP TPG FSP A + GFSP + ++SP S + G ++P +P Sbjct: 1501 TPAYGAWSPRSGMTPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSP 1559 Query: 293 GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 472 G G +P SP SP Y SP GG + +Y+P SP+Y TSP YSP+ Sbjct: 1560 GELSCGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPT 1610 Query: 473 TPALAVSSPGY 505 +P + +SP Y Sbjct: 1611 SPNYSPTSPSY 1621 Score = 53.9 bits (128), Expect = 6e-06 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178 A SP+ + Y P G TP + +P+Y+ YSP +P + S Sbjct: 1566 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1625 Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 P+Y T P +SP + + S SP S + T +P +P SP SP Y Sbjct: 1626 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1684 Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475 + SP + + + +Y+P SP+Y TSP YSP++ Sbjct: 1685 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1744 Query: 476 PALAVSSPGY 505 P+ + +SP Y Sbjct: 1745 PSYSPTSPNY 1754 [4][TOP] >UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA Length = 1943 Score = 77.4 bits (189), Expect = 5e-13 Identities = 58/168 (34%), Positives = 78/168 (46%), Gaps = 34/168 (20%) Frame = +2 Query: 104 FDAAMTPTY--AYSPARAR--TPGGTAFSPAYTGPGGFSPINATASFSPIMS-------S 250 ++A TP Y A+SPA TPGG FSP+ GGFSP S+SP S Sbjct: 1582 WNAGTTPAYGAAWSPATGSGMTPGGAGFSPSGHSEGGFSPYGGGGSWSPGSPGGSLGGMS 1641 Query: 251 ADAAGRATP----------GRMTPGRSPA-------------GRFTPRMSPASPGYAAMS 361 AG +P G +PG SP G +PR SP SP Y+ S Sbjct: 1642 PSGAGAYSPAASDYGSGLEGLSSPGYSPTSPASPYGASSPAYGVMSPRYSPTSPSYSPTS 1701 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP GYSP++P+ + +SP Y Sbjct: 1702 PSY-SPTSPSYSPTSPSYSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1746 Score = 67.0 bits (162), Expect = 7e-10 Identities = 57/171 (33%), Positives = 80/171 (46%), Gaps = 11/171 (6%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPA--------RARTPGGTAFSP 181 A SPA + Y G EG +PG + + +P A SPA +P + SP Sbjct: 1647 AYSPAASD----YGSGLEGLSSPGYSPTSPASPYGASSPAYGVMSPRYSPTSPSYSPTSP 1702 Query: 182 AY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352 +Y T P +SP + + S SP S T +P +P SPASPGY+ Sbjct: 1703 SYSPTSP-SYSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPASPGYS 1761 Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SPR+ + + Y+P SPAY TSP YSP++P+ + +SPGY Sbjct: 1762 PSSPRY-SPTSPAYSPTSPTYSPTSPAYSPTSP--TYSPTSPSYSPASPGY 1809 Score = 65.5 bits (158), Expect = 2e-09 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAYTGP 196 SP + Y+P G +P + +PTY AYSP+ +P + SP Y Sbjct: 1792 SPTYSPTSPSYSPASPGY-SPSSPRYSPTSPTYSPTSPAYSPS---SPQYSPSSPQY--- 1844 Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG- 373 SP ++ ++P + DA+ +P +P SP+ +PR SP+SP Y+ SP++ Sbjct: 1845 ---SP--SSPQYTPSSPAGDASPAYSP--TSPQYSPS---SPRYSPSSPQYSPTSPQYSP 1894 Query: 374 ---GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG G + + Y+P+SP Y +SP YSPS+P + SSP Y Sbjct: 1895 SSPGGAGTSYSRSSPQYSPSSPQYSPSSP--QYSPSSPQYSPSSPQY 1939 Score = 61.6 bits (148), Expect = 3e-08 Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P G ++ +P+Y+ YSPA +PG + SP Y T Sbjct: 1715 SPSYSPTSPSYSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPA---SPGYSPSSPRYSPT 1770 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + T S SP S +P SP +P SPASPGY+ SPR Sbjct: 1771 SPA-YSPTSPTYSPTSPAYSPT-----------SPTYSPT---SPSYSPASPGYSPSSPR 1815 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + Y+P SPAY +SP YSPS+P + SSP Y Sbjct: 1816 Y--------SPTSPTYSPTSPAYSPSSP--QYSPSSPQYSPSSPQY 1851 [5][TOP] >UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 1 n=1 Tax=Hydra magnipapillata RepID=UPI00019270BB Length = 2041 Score = 76.6 bits (187), Expect = 8e-13 Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 7/174 (4%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSP 181 +AAS A SP M +G+TPG +P A + MTP A +SP+ G FSP Sbjct: 1508 SAASPSNAMSPQMTPWNQGHTPGYGDGWSP--ALGSGMTPGAASFSPSAHSDASG--FSP 1563 Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGR--MTPGRSPAGRF----TPRMSPASP 343 A GGFSP + + S + +P R M+P SP +P MSP+SP Sbjct: 1564 A----GGFSPAWSPQDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQSPAMSPSSP 1619 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GY+ SP + G Y+P SP+Y TSP GYSP++P+ + +SP Y Sbjct: 1620 GYSPTSPLYSPTSPG--------YSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1663 Score = 56.6 bits (135), Expect = 9e-07 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1660 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1715 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SPI S + T +P +P+ SP SP Y+ SP Sbjct: 1716 SPS-YSPTSPSYSPTSPIYSPTSPSYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPS 1774 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + Y+P SPAY SP YSPS+P+ + +SP Y Sbjct: 1775 Y--------SPSSPQYSPTSPAYSPQSP--SYSPSSPSYSPTSPKY 1810 [6][TOP] >UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019270E9 Length = 2014 Score = 76.3 bits (186), Expect = 1e-12 Identities = 59/168 (35%), Positives = 81/168 (48%), Gaps = 1/168 (0%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSP 181 +AAS A SP M +G+TPG +P A + MTP A +SP+ G FSP Sbjct: 1501 SAASPSNAMSPQMTPWNQGHTPGYGDGWSP--ALGSGMTPGAASFSPSAHSDASG--FSP 1556 Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 A GGFSP + P S A M+P +P SP SPGY+ S Sbjct: 1557 A----GGFSPAWSPQDSIPSYSPNSPAFNPQSPAMSPSSPGYSPTSPLYSPTSPGYSPTS 1612 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + G + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1613 PSY-SPTSPGYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1657 Score = 56.6 bits (135), Expect = 9e-07 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1633 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1688 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SPI S + T +P +P+ SP SP Y+ SP Sbjct: 1689 SPS-YSPTSPSYSPTSPIYSPTSPSYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPS 1747 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + Y+P SPAY SP YSPS+P+ + +SP Y Sbjct: 1748 Y--------SPSSPQYSPTSPAYSPQSP--SYSPSSPSYSPTSPKY 1783 [7][TOP] >UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48672 Length = 1913 Score = 75.9 bits (185), Expect = 1e-12 Identities = 61/176 (34%), Positives = 84/176 (47%), Gaps = 9/176 (5%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGR-AFDAAMTPTYAYSPA-------RARTP 160 A S + SP M +G TP TPG F A + + +SPA + ++P Sbjct: 1504 AMGSPSQSMSPQMTPWNQGATPMHGSGMTPGGPGFSPANSESTGFSPAYSPAWSPQPQSP 1563 Query: 161 GGTAFSPAYTGPGG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 G A SP P G SP S+SP S A ATP +PG SP +P SP Sbjct: 1564 GSPANSPYIPSPAGPMSP-----SYSPASPSYLPASPATP--QSPGYSPT---SPSYSPT 1613 Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SPGY+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1614 SPGYSPASPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1666 Score = 74.7 bits (182), Expect = 3e-12 Identities = 54/156 (34%), Positives = 72/156 (46%), Gaps = 18/156 (11%) Frame = +2 Query: 92 PGRAFDAAMTPTYAYSP-------------ARARTPGGTAFSPAYTGPGGFSPINATASF 232 PG F A +P+ + SP TPGG FSPA + GFSP ++ Sbjct: 1498 PGMLFGAMGSPSQSMSPQMTPWNQGATPMHGSGMTPGGPGFSPANSESTGFSP-----AY 1552 Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412 SP S + +P SPAG +P SPASP Y SP G P + + Sbjct: 1553 SPAWSPQPQSP-GSPANSPYIPSPAGPMSPSYSPASPSYLPASPATPQSPGYSPTSPSYS 1611 Query: 413 -----YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+PASP+Y TSP YSP++P+ + +SP Y Sbjct: 1612 PTSPGYSPASPSYSPTSP--SYSPTSPSYSPTSPSY 1645 Score = 58.5 bits (140), Expect = 2e-07 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ S Y+P ++ + +P+Y+ YSP+ + +P ++SP T Sbjct: 1747 SPSYSPSSPKYSPTSPSYSPTSPSY-SPQSPSYSPGSPSYSPSSPKYSPTSPSYSP--TS 1803 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + S SP S A + T + +P +P SP SP Y+ SP + Sbjct: 1804 PS-YSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY 1862 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505 + + Y+P+SP Y TSP G YSP++P+ + +SP Y Sbjct: 1863 --------SPTSPKYSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSY 1900 Score = 54.3 bits (129), Expect = 4e-06 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 14/172 (8%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1663 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1718 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1719 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPS 1777 Query: 368 FGGGLGGGPAGG------AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + G + +Y+P SP+Y TSP +SPS+P + +SP Y Sbjct: 1778 YSPGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSP--NFSPSSPTYSPASPSY 1827 Score = 53.9 bits (128), Expect = 6e-06 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ Y+PG +P + +P+Y+ YSP +P +SPA Sbjct: 1768 SPSYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPS 1826 Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 SP + +S P S T + +P +P+ SP+SP Y+ SP+ Sbjct: 1827 YSPTSPKYSPSS--PKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSPTSPK-- 1882 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMG 460 G + + +Y+P SP+Y TSPGMG Sbjct: 1883 ---GSTYSPTSPSYSPTSPSYSPTSPGMG 1908 Score = 53.5 bits (127), Expect = 8e-06 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P + +PG + +P Y SP +P + SP+Y T P F Sbjct: 1761 SPSYSPTSPSYSP-QSPSYSPGSPSYSPSSPKY--SPT---SPSYSPTSPSYSPTSPN-F 1813 Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + T S SP S + + +P +P+ SPASP Y+ SP++ Sbjct: 1814 SPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKY---- 1869 Query: 383 GGGPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSPG 502 + + Y+P SP Y TSP YSP++P+ + +SPG Sbjct: 1870 ----SPSSPTYSPTSPKGSTYSPTSPS--YSPTSPSYSPTSPG 1906 [8][TOP] >UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis RepID=Q9BMP3_MONBE Length = 1743 Score = 75.9 bits (185), Expect = 1e-12 Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 8/155 (5%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDA---AMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINAT 223 G++P G +PG A +P A SP A +PG + SP Y + P G+SP + Sbjct: 1459 GFSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSP--TS 1516 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP---RMSPASPGYAAMSPRFGGGLGGGP 394 S+SP ++ +PG +P SPAG FTP SP SP Y+ SP GG Sbjct: 1517 PSYSP---TSPGMSPTSPG-FSPA-SPAG-FTPTSPHYSPTSPSYSPTSPNVGGAQSPSY 1570 Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 + + +Y+P+SPAY A SP YSP++P+ + +SP Sbjct: 1571 SPTSPSYSPSSPAYNAQSP--AYSPTSPSYSPTSP 1603 Score = 69.7 bits (169), Expect = 1e-10 Identities = 58/171 (33%), Positives = 72/171 (42%), Gaps = 24/171 (14%) Frame = +2 Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIM 244 TP EG TP MTP A SP F T GGFSP+ A A M Sbjct: 1425 TPWGEGNATPFGM--GGMTPQNASSPY---------FGAGQTPIGGFSPVVAGAFSPGGM 1473 Query: 245 SSADAAGRATPGRMTPG----------------RSPAG--RFTPRMSPASPGYAAMSPRF 370 S ++ G M+PG SPAG +P SP SPG + SP F Sbjct: 1474 LSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSPTSPSYSPTSPGMSPTSPGF 1533 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMG------YSPSTPALAVSSPGY 505 G + Y+P SP+Y TSP +G YSP++P+ + SSP Y Sbjct: 1534 SPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSPAY 1584 Score = 64.7 bits (156), Expect = 3e-09 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY---------AYSPARART-PGGTAFSP 181 SP M + G++P TP + +P+Y A SP+ + T P + SP Sbjct: 1523 SPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSP 1582 Query: 182 AYTGPG-GFSPINATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYA 352 AY +SP + S+SP +S + +PG +PG SP+ +P SP SP Y+ Sbjct: 1583 AYNAQSPAYSP--TSPSYSP--TSPNVKSPTSPGYSPTSPGYSPS---SPSYSPTSPNYS 1635 Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + + + Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1636 PTSPSY--------SPTSPNYSPTSPSYSPTSP--NYSPTSPSYSPTSPNY 1676 Score = 60.1 bits (144), Expect = 8e-08 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 20/180 (11%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205 A+SP+ + Y+P A+ +P+Y+ + ++P +SP T PG + Sbjct: 1565 AQSPSYSPTSPSYSPSSPAYNAQSPAYSPT-SPSYSPTSPNVKSPTSPGYSP--TSPG-Y 1620 Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG--- 373 SP + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1621 SPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTS 1680 Query: 374 ---GGLGGGPAGGAGAYAPASPAYMATSPGM-------------GYSPSTPALAVSSPGY 505 + + +Y+P SP Y TSP GYSP++P + +SPGY Sbjct: 1681 PSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGY 1740 Score = 55.5 bits (132), Expect = 2e-06 Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 14/163 (8%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A+SPA + Y+P ++P + +P Y+ YSP +P + SP+Y Sbjct: 1586 AQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPT---SPNYSPTSPSYS 1642 Query: 188 -TGPG------GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 T P +SP + S SP S T +P +P SP SP Sbjct: 1643 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1702 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 472 Y+ SP + G + Y+P SP Y TSP GYSPS Sbjct: 1703 NYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSP--GYSPS 1743 [9][TOP] >UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis RepID=A9V5W6_MONBE Length = 1307 Score = 75.9 bits (185), Expect = 1e-12 Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 8/155 (5%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDA---AMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINAT 223 G++P G +PG A +P A SP A +PG + SP Y + P G+SP + Sbjct: 1023 GFSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSP--TS 1080 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP---RMSPASPGYAAMSPRFGGGLGGGP 394 S+SP ++ +PG +P SPAG FTP SP SP Y+ SP GG Sbjct: 1081 PSYSP---TSPGMSPTSPG-FSPA-SPAG-FTPTSPHYSPTSPSYSPTSPNVGGAQSPSY 1134 Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 + + +Y+P+SPAY A SP YSP++P+ + +SP Sbjct: 1135 SPTSPSYSPSSPAYNAQSP--AYSPTSPSYSPTSP 1167 Score = 64.7 bits (156), Expect = 3e-09 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY---------AYSPARART-PGGTAFSP 181 SP M + G++P TP + +P+Y A SP+ + T P + SP Sbjct: 1087 SPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSP 1146 Query: 182 AYTGPG-GFSPINATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYA 352 AY +SP + S+SP +S + +PG +PG SP+ +P SP SP Y+ Sbjct: 1147 AYNAQSPAYSP--TSPSYSP--TSPNVKSPTSPGYSPTSPGYSPS---SPSYSPTSPNYS 1199 Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + + + Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1200 PTSPSY--------SPTSPNYSPTSPSYSPTSP--NYSPTSPSYSPTSPNY 1240 Score = 60.1 bits (144), Expect = 8e-08 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 20/180 (11%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205 A+SP+ + Y+P A+ +P+Y+ + ++P +SP T PG + Sbjct: 1129 AQSPSYSPTSPSYSPSSPAYNAQSPAYSPT-SPSYSPTSPNVKSPTSPGYSP--TSPG-Y 1184 Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG--- 373 SP + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1185 SPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTS 1244 Query: 374 ---GGLGGGPAGGAGAYAPASPAYMATSPGM-------------GYSPSTPALAVSSPGY 505 + + +Y+P SP Y TSP GYSP++P + +SPGY Sbjct: 1245 PSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGY 1304 Score = 56.2 bits (134), Expect = 1e-06 Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Frame = +2 Query: 149 ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----GRSPAGRF 316 A TP G + + G GG +P NA++ + AG+ G +P SP G Sbjct: 987 AATPWGEGNATPF-GMGGMTPQNASSPYL-------GAGQTPIGGFSPVVAGAFSPGGML 1038 Query: 317 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPA-YMATSPGMGYSPSTPALAVS 493 +P SPG AMSP GG + G + Y P+SPA Y TSP YSP++P ++ + Sbjct: 1039 SPGGIAQSPG-GAMSP--GGAMSPGVVSASPFYDPSSPAGYSPTSPS--YSPTSPGMSPT 1093 Query: 494 SPGY 505 SPG+ Sbjct: 1094 SPGF 1097 Score = 55.5 bits (132), Expect = 2e-06 Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 14/163 (8%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A+SPA + Y+P ++P + +P Y+ YSP +P + SP+Y Sbjct: 1150 AQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPT---SPNYSPTSPSYS 1206 Query: 188 -TGPG------GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 T P +SP + S SP S T +P +P SP SP Sbjct: 1207 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1266 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 472 Y+ SP + G + Y+P SP Y TSP GYSPS Sbjct: 1267 NYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSP--GYSPS 1307 [10][TOP] >UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis RepID=A7S8F9_NEMVE Length = 1929 Score = 75.9 bits (185), Expect = 1e-12 Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 7/173 (4%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPA 184 AA + A SP M G TP +PG + MTP A +SP+ A G + Sbjct: 1503 AAGSPSAMSPQMTPWNMGATPAYMEAWSPGMG--SGMTPGAASFSPSAASDASGMS---- 1556 Query: 185 YTGPGGFSPI-NATASFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGY 349 PGGFSP + SP+ + +P +PG SP+ +P MSPASP Y Sbjct: 1557 ---PGGFSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSPSMSPASPSY 1613 Query: 350 AAMSPRFG-GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + G + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1614 SPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1664 Score = 57.0 bits (136), Expect = 7e-07 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 13/171 (7%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1716 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP+SP Y+ SP Sbjct: 1717 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPS 1775 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505 + + + Y+PASP+Y TSP YSP++P+ + SSP Y Sbjct: 1776 YSPQSPSYASPSSPKYSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKY 1826 Score = 55.1 bits (131), Expect = 3e-06 Identities = 51/161 (31%), Positives = 72/161 (44%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ S Y+P ++ + +P Y SPA +P + SP Y T P + Sbjct: 1759 SPSYSPSSPSYSPSSPSYSPQSPSYASPSSPKY--SPA---SPSYSPTSPKYSPTSPN-Y 1812 Query: 206 SPINATASFSPIMSSADAAGRA-TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP A+ S+SP + TP +P SPA +P SP+SP Y+ SPR Sbjct: 1813 SP--ASPSYSPSSPKYSPTSPSYTPA--SPSYSPA---SPSYSPSSPSYSPSSPR----- 1860 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y P SP Y TSP YSP++P + ++P Y Sbjct: 1861 ----------YTPTSPQYSPTSP--KYSPASPNYSPTTPSY 1889 [11][TOP] >UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2A Length = 1896 Score = 74.7 bits (182), Expect = 3e-12 Identities = 57/152 (37%), Positives = 73/152 (48%), Gaps = 3/152 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPARARTPGGTAFSP-AYTGPGGFSPINATAS 229 G P G +P ++ TP Y A+SP TPG FSP A + GFSP Sbjct: 1505 GSAPSPMGGISPAMTPWNQGATPAYGAWSPRSGMTPGAAGFSPSAASDASGFSP-----G 1559 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP S TPG +PG SP G +P SP SP Y SP GG + Sbjct: 1560 YSPAWSP-------TPG--SPG-SPGGAMSPSYSPTSPAYEPRSP-------GGYTPQSP 1602 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1603 SYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1632 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 15/164 (9%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPG-----GTAFSPAYT---------G 193 G TPG G +P A DA+ +P YSPA + TPG G A SP+Y+ Sbjct: 1537 GMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGGAMSPSYSPTSPAYEPRS 1593 Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 PGG++P + S+SP S +P SP +P SP SP Y+ SP + Sbjct: 1594 PGGYTP--QSPSYSPTSPSYSPT--------SPSYSPT---SPNYSPTSPSYSPTSPSY- 1639 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1640 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1674 Score = 54.3 bits (129), Expect = 4e-06 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1650 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1705 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P R +P SP SP Y+ SP+ Sbjct: 1706 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPK 1764 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1765 Y--------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1800 [12][TOP] >UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A92 Length = 1714 Score = 74.7 bits (182), Expect = 3e-12 Identities = 57/164 (34%), Positives = 74/164 (45%), Gaps = 18/164 (10%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY------------TGPGGFSP 211 PG + G F +A +P SPA TP T +PAY G GFSP Sbjct: 1468 PGISVAGSTGMFFGSAPSPMSGMSPAM--TPWNTGATPAYGAWSPSVGSGMTPGAAGFSP 1525 Query: 212 INAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFG 373 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1526 SAASDASGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSP--- 1582 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1583 ----GGYTPQSPGYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1620 Score = 70.5 bits (171), Expect = 6e-11 Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG Y SP A +P + SPAY PG Sbjct: 1524 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPG 1583 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + +SP +P SP +P SP SP Y+ SP + Sbjct: 1584 GYTP--QSPGYSPT---------------SPSYSPT---SPSYSPTSPSYSPTSPSYSPT 1623 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GP + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1624 SPSGPT--SPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPNY 1661 Score = 67.4 bits (163), Expect = 5e-10 Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 19/153 (12%) Frame = +2 Query: 104 FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRA 271 ++ TP Y A+SP+ TPG FSP A + GFSP + ++SP S + G A Sbjct: 1497 WNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPA 1555 Query: 272 TP------GRMTPGRSPAG-RFTPRM----SPASPGYAAMSPRFGGGLGGGPAGGAGAYA 418 +P G M+P SP + PR +P SPGY+ SP + + + +Y+ Sbjct: 1556 SPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSP-TSPSYSPTSPSYS 1614 Query: 419 PASPAYMATSPG----MGYSPSTPALAVSSPGY 505 P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1615 PTSPSYSPTSPSGPTSPSYSPTSPSYSPTSPSY 1647 [13][TOP] >UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata RepID=Q9AXN0_9RHOD Length = 1746 Score = 74.3 bits (181), Expect = 4e-12 Identities = 65/187 (34%), Positives = 83/187 (44%), Gaps = 20/187 (10%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGR--EGQRTPGRAFDAAMTPTYAY-------SPARART 157 A AR R+ M + TP G TP A TP+Y Y SP A Sbjct: 1482 AEEDARTPRAGLMSPAHGFDTPRAFDAGSMTPYPATPGQATPSYPYTPIGGQFSPFAASP 1541 Query: 158 PGGTAFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRA--------TPGRM--TPGRSP 304 G AFSP T P SP AS F+ + S AG A +PG + +PG SP Sbjct: 1542 YGDAAFSPTPTSPAYASPYGTAASPFNAMASPYSRAGNAFYSPRSPSSPGGVAASPGYSP 1601 Query: 305 AGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL 484 +P SP SP Y+ SP + + + AY+P SPAY TSP YSP++P Sbjct: 1602 T---SPTYSPTSPSYSPTSPSY--------SPTSPAYSPTSPAYSPTSP--TYSPTSPTY 1648 Query: 485 AVSSPGY 505 + +SP Y Sbjct: 1649 SPTSPTY 1655 Score = 61.2 bits (147), Expect = 4e-08 Identities = 51/155 (32%), Positives = 66/155 (42%), Gaps = 31/155 (20%) Frame = +2 Query: 134 YSPARARTPGGTAFSPAY---------TGPGGFSPINATAS-FSPIMSSADAAGRATPGR 283 YSP +PGG A SP Y T P +SP + + S SP S A T Sbjct: 1582 YSPRSPSSPGGVAASPGYSPTSPTYSPTSPS-YSPTSPSYSPTSPAYSPTSPAYSPTSPT 1640 Query: 284 MTPGRSPAGRFTPRMSPASPGYA----AMSPRFGGGLGGGPAG-----GAGAYAPASPAY 436 +P +P SP SP Y+ AMSP GG+ P+ + Y+P+SP Y Sbjct: 1641 YSPTSPTYSPTSPTYSPTSPMYSPSSPAMSPARAGGVSYSPSSPHYSPSSPQYSPSSPHY 1700 Query: 437 MATSPGMG------------YSPSTPALAVSSPGY 505 +SP YSPS+PA + SSP Y Sbjct: 1701 SPSSPHYSPSSPQYSPSSPQYSPSSPAYSPSSPAY 1735 Score = 60.5 bits (145), Expect = 6e-08 Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 14/182 (7%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPG 163 +A S R SP + GY+P +P + +P+Y AYSP A +P Sbjct: 1579 NAFYSPRSPSSPGGVAASPGYSP-TSPTYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1637 Query: 164 GTAFSPAYTGPGGFSPINATAS--------FSPIMSSADAAGRATPGRMTPGRSPAGRFT 319 +SP T P +SP + T S SP MS A A G + +P SP+ + Sbjct: 1638 SPTYSP--TSPT-YSPTSPTYSPTSPMYSPSSPAMSPARAGG-VSYSPSSPHYSPS---S 1690 Query: 320 PRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 P+ SP+SP Y+ SP + + + Y+P+SP Y +SP YSPS+PA + SSP Sbjct: 1691 PQYSPSSPHYSPSSPHY--------SPSSPQYSPSSPQYSPSSPA--YSPSSPAYSPSSP 1740 Query: 500 GY 505 + Sbjct: 1741 AH 1742 [14][TOP] >UniRef100_O77165 DNA-directed RNA polymerase (Fragment) n=1 Tax=Breviata anathema RepID=O77165_9EUKA Length = 1690 Score = 74.3 bits (181), Expect = 4e-12 Identities = 64/179 (35%), Positives = 84/179 (46%), Gaps = 13/179 (7%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169 A+ A SPA + Y+P A+ A +P Y AYSPA A +P Sbjct: 1509 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1567 Query: 170 AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 A+SPA SP + AS +SP + A A +P SPA +P SPASP Sbjct: 1568 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1623 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGY 505 Y+ SP + PA + AY+PASPAY SP G YSP++PA + +SP Y Sbjct: 1624 AYSPASPAYS------PA--SPAYSPASPAYSPASPAYGPASPAYSPASPAYSPASPAY 1674 Score = 73.6 bits (179), Expect = 7e-12 Identities = 63/174 (36%), Positives = 82/174 (47%), Gaps = 8/174 (4%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169 AA+ SPA + Y+P A+ A +P Y AYSPA A +P Sbjct: 1502 AAAGYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1560 Query: 170 AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 A+SPA SP + AS +SP + A A +P SPA +P SPASP Sbjct: 1561 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1616 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+ SP + PA + AY+PASPAY SP YSP++PA +SP Y Sbjct: 1617 AYSPASPAYS------PA--SPAYSPASPAYSPASPA--YSPASPAYGPASPAY 1660 Score = 73.2 bits (178), Expect = 9e-12 Identities = 63/174 (36%), Positives = 82/174 (47%), Gaps = 8/174 (4%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169 A+ A SPA + Y+P A+ A +P Y AYSPA A +P Sbjct: 1523 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1581 Query: 170 AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 A+SPA SP + AS +SP + A A +P SPA +P SPASP Sbjct: 1582 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1637 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+ SP + PA + AY PASPAY SP YSP++PA + +SP Y Sbjct: 1638 AYSPASPAYS------PA--SPAYGPASPAYSPASPA--YSPASPAYSPASPAY 1681 Score = 70.5 bits (171), Expect = 6e-11 Identities = 62/172 (36%), Positives = 81/172 (47%), Gaps = 8/172 (4%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169 A+ A SPA + Y+P A+ A +P Y AYSPA A +P Sbjct: 1530 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1588 Query: 170 AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 A+SPA SP + AS +SP + A A +P SPA +P SPASP Sbjct: 1589 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1644 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 Y+ SP + GPA + AY+PASPAY SP YSP++PA + P Sbjct: 1645 AYSPASPAY------GPA--SPAYSPASPAYSPASP--AYSPASPAYDPAEP 1686 Score = 69.3 bits (168), Expect = 1e-10 Identities = 59/153 (38%), Positives = 75/153 (49%), Gaps = 4/153 (2%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAFSPAYTGPGGFSPINATAS- 229 GY P PG A +P AYSPA A +P A+SPA SP + AS Sbjct: 1493 GYIP------VPGSPAAAGYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASP 1546 Query: 230 -FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406 +SP + A A +P SPA +P SPASP Y+ SP + PA + Sbjct: 1547 AYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA--S 1594 Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 AY+PASPAY SP YSP++PA + +SP Y Sbjct: 1595 PAYSPASPAYSPASPA--YSPASPAYSPASPAY 1625 Score = 62.0 bits (149), Expect = 2e-08 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 2/111 (1%) Frame = +2 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYA 352 P+ GP G+ P+ + + + ++ A A+P +P SPA +P SPASP Y+ Sbjct: 1486 PSSPGPFGYIPVPGSPAAAGYSPASPAYSPASPAYSPASPAYSPA---SPAYSPASPAYS 1542 Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + PA + AY+PASPAY SP YSP++PA + +SP Y Sbjct: 1543 PASPAYS------PA--SPAYSPASPAYSPASPA--YSPASPAYSPASPAY 1583 Score = 58.5 bits (140), Expect = 2e-07 Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Frame = +2 Query: 119 TPTYAYSPARARTPG---GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT 289 +P+ SP+ G G P + PG F I P+ S AAG + + Sbjct: 1461 SPSVTMSPSGGFGMGMGMGMGDIPVPSSPGPFGYI-------PVPGSPAAAGYSPA---S 1510 Query: 290 PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469 P SPA +P SPASP Y+ SP + PA + AY+PASPAY SP YSP Sbjct: 1511 PAYSPA---SPAYSPASPAYSPASPAYS------PA--SPAYSPASPAYSPASPA--YSP 1557 Query: 470 STPALAVSSPGY 505 ++PA + +SP Y Sbjct: 1558 ASPAYSPASPAY 1569 [15][TOP] >UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae RepID=UPI000186501C Length = 1956 Score = 73.9 bits (180), Expect = 5e-12 Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Frame = +2 Query: 119 TPTY--AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGR 283 TP Y A+SP TPG FSP A + G SP + ++SP S + G A+P Sbjct: 1523 TPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYI 1582 Query: 284 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 463 +PG G +P SPASP Y SP GG + Y+P SP+Y TSP Y Sbjct: 1583 PSPG----GPMSPSYSPASPAYMPRSP-------GGMTPQSPGYSPTSPSYSPTSP--SY 1629 Query: 464 SPSTPALAVSSPGY 505 SP++P + +SP Y Sbjct: 1630 SPASPNYSPTSPSY 1643 Score = 72.0 bits (175), Expect = 2e-11 Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAF----SPAYTGPGG-FSPINAT 223 G TPG G +P A DA+ YSPA + TPG SP PGG SP Sbjct: 1537 GMTPGAAGF-SPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYIPSPGGPMSP---- 1591 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 S+SP ++ A +PG MTP +P SP SP Y+ SP + + Sbjct: 1592 -SYSP---ASPAYMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNY--------SPT 1639 Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1640 SPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 55.8 bits (133), Expect = 2e-06 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 10/168 (5%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG-FS 208 SP+ + Y+P ++ + +P+Y+ S +P T SP Y+ +S Sbjct: 1773 SPSYSPTSPSYSPSSPNYSPQSPSYSPS-SPSYSPSSPNPSSPKYTPTSPKYSPSSPKYS 1831 Query: 209 PINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 P + S SP S + A +P +P+ SPASP Y SP++ Sbjct: 1832 PSSPKYSPTSPTYSPSSAKYSPASPSYSPSTPKYTPTSPKYSPASPTYTPTSPKY-SPTS 1890 Query: 386 GGPAGGAGAYAPASPAYMATSP--------GMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP G YSP+TP + +SP Y Sbjct: 1891 PSYTPDTPKYSPTSPKYSPTSPTYSPTSPKGSTYSPTTPGYSPASPTY 1938 [16][TOP] >UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae RepID=C3ZES3_BRAFL Length = 1934 Score = 73.9 bits (180), Expect = 5e-12 Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Frame = +2 Query: 119 TPTY--AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGR 283 TP Y A+SP TPG FSP A + G SP + ++SP S + G A+P Sbjct: 1523 TPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYI 1582 Query: 284 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 463 +PG G +P SPASP Y SP GG + Y+P SP+Y TSP Y Sbjct: 1583 PSPG----GPMSPSYSPASPAYMPRSP-------GGMTPQSPGYSPTSPSYSPTSP--SY 1629 Query: 464 SPSTPALAVSSPGY 505 SP++P + +SP Y Sbjct: 1630 SPASPNYSPTSPSY 1643 Score = 72.0 bits (175), Expect = 2e-11 Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAF----SPAYTGPGG-FSPINAT 223 G TPG G +P A DA+ YSPA + TPG SP PGG SP Sbjct: 1537 GMTPGAAGF-SPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYIPSPGGPMSP---- 1591 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 S+SP ++ A +PG MTP +P SP SP Y+ SP + + Sbjct: 1592 -SYSP---ASPAYMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNY--------SPT 1639 Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1640 SPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 67.0 bits (162), Expect = 7e-10 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 8/175 (4%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AA + A S A S GY+P TPG Y SP +P + SPA Sbjct: 1542 AAGFSPSAASDASGMSPAGYSPA--WSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPA 1599 Query: 185 YT--GPGGFSPIN-----ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340 Y PGG +P + + S+SP S + A+ +P +P SP +P SP S Sbjct: 1600 YMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNYSP--TSPSYSPT---SPSYSPTS 1654 Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1655 PSYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1699 Score = 63.5 bits (153), Expect = 7e-09 Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 10/177 (5%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAF----DAAMTPTYA-YSPA-RARTPGG 166 +AAS SPA TPG G P + M+P+Y+ SPA R+PGG Sbjct: 1548 SAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPRSPGG 1607 Query: 167 -TAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334 T SP Y T P +SP + + S SP S + T +P +P SP Sbjct: 1608 MTPQSPGYSPTSPS-YSPTSPSYSPASPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666 Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1667 TSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1720 [17][TOP] >UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis RepID=Q1E2G9_COCIM Length = 1750 Score = 73.9 bits (180), Expect = 5e-12 Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 18/186 (9%) Frame = +2 Query: 2 DAAASARIARSP-------AMPESERGYTP-GREGQRTPGRAFDAAMTPTYA-YSPARAR 154 D AA+ + SP + P+ + ++P G+ G TP F P + +SPA AR Sbjct: 1503 DGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPA-GFTEYQPPGFGGFSPAGAR 1561 Query: 155 TPGG-TAFSPAYTGPG--GFSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTP 322 +PGG + SP T P G+SP + + SP MS +P MT PG SPA +P Sbjct: 1562 SPGGYSPTSPFNTSPTSPGYSPSSGYSPTSPGMSIT------SPRYMTSPGFSPA---SP 1612 Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALA 487 +P SP Y+ SP G G + + +Y+P SP + TSP +SP++PA + Sbjct: 1613 TFAPTSPAYSPTSP----GYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFS 1668 Query: 488 VSSPGY 505 +SP Y Sbjct: 1669 PTSPSY 1674 Score = 60.5 bits (145), Expect = 6e-08 Identities = 53/171 (30%), Positives = 73/171 (42%), Gaps = 9/171 (5%) Frame = +2 Query: 14 SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187 S R SP + + P + A +PT +YSP +PG + SP+Y Sbjct: 1598 SPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1654 Query: 188 -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 T P FSP A+ +FSP S A G SP +P+ +P SPG++ SP Sbjct: 1655 PTSPS-FSP--ASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSP 1711 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMA--TSPG----MGYSPSTPALAVSSP 499 AY+P SP + TSPG GYSP++P +SP Sbjct: 1712 E--------------AYSPTSPNFAGSPTSPGGPTSPGYSPTSPTFNPTSP 1748 [18][TOP] >UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta SOWgp RepID=C5PAJ4_COCP7 Length = 1746 Score = 73.9 bits (180), Expect = 5e-12 Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 18/186 (9%) Frame = +2 Query: 2 DAAASARIARSP-------AMPESERGYTP-GREGQRTPGRAFDAAMTPTYA-YSPARAR 154 D AA+ + SP + P+ + ++P G+ G TP F P + +SPA AR Sbjct: 1503 DGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPA-GFTEYQPPGFGGFSPAGAR 1561 Query: 155 TPGG-TAFSPAYTGPG--GFSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTP 322 +PGG + SP T P G+SP + + SP MS +P MT PG SPA +P Sbjct: 1562 SPGGYSPTSPFNTSPTSPGYSPSSGYSPTSPGMSIT------SPRYMTSPGFSPA---SP 1612 Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALA 487 +P SP Y+ SP G G + + +Y+P SP + TSP +SP++PA + Sbjct: 1613 TFAPTSPAYSPTSP----GYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFS 1668 Query: 488 VSSPGY 505 +SP Y Sbjct: 1669 PTSPSY 1674 Score = 57.4 bits (137), Expect = 5e-07 Identities = 51/164 (31%), Positives = 70/164 (42%), Gaps = 9/164 (5%) Frame = +2 Query: 14 SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187 S R SP + + P + A +PT +YSP +PG + SP+Y Sbjct: 1598 SPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1654 Query: 188 -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 T P FSP A+ +FSP S A G SP +P+ +P SPG++ SP Sbjct: 1655 PTSPS-FSP--ASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSP 1711 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMA--TSPG----MGYSPSTP 478 AY+P SP + TSPG GYSP++P Sbjct: 1712 E--------------AYSPTSPNFAGSPTSPGGPTSPGYSPTSP 1741 [19][TOP] >UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48671 Length = 1921 Score = 73.6 bits (179), Expect = 7e-12 Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFSPAYTGPGG-FSPI 214 P G TPG G +P + +P Y A+SP + ++PG A SP P G SP Sbjct: 1533 PMMGSGMTPGGPGF-SPANSESTGFSPAYSPAWSP-QPQSPGSPANSPYIPSPAGPMSP- 1589 Query: 215 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394 S+SP S A ATP +PG SP +P SP SPGY+ SP + Sbjct: 1590 ----SYSPASPSYLPASPATP--QSPGYSPT---SPSYSPTSPGYSPASPSYSP-TSPSY 1639 Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1640 SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1674 Score = 71.6 bits (174), Expect = 3e-11 Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 26/164 (15%) Frame = +2 Query: 92 PGRAFDAAMTPTYAYSP---------------------ARARTPGGTAFSPAYTGPGGFS 208 PG F A +P+ + SP TPGG FSPA + GFS Sbjct: 1498 PGMLFGAMGSPSQSMSPQMTPWNQGATPMHGASWSPMMGSGMTPGGPGFSPANSESTGFS 1557 Query: 209 PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388 P ++SP S + +P SPAG +P SPASP Y SP G Sbjct: 1558 P-----AYSPAWSPQPQSP-GSPANSPYIPSPAGPMSPSYSPASPSYLPASPATPQSPGY 1611 Query: 389 GPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + Y+PASP+Y TSP YSP++P+ + +SP Y Sbjct: 1612 SPTSPSYSPTSPGYSPASPSYSPTSP--SYSPTSPSYSPTSPSY 1653 Score = 58.5 bits (140), Expect = 2e-07 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ S Y+P ++ + +P+Y+ YSP+ + +P ++SP T Sbjct: 1755 SPSYSPSSPKYSPTSPSYSPTSPSY-SPQSPSYSPGSPSYSPSSPKYSPTSPSYSP--TS 1811 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + S SP S A + T + +P +P SP SP Y+ SP + Sbjct: 1812 PS-YSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY 1870 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505 + + Y+P+SP Y TSP G YSP++P+ + +SP Y Sbjct: 1871 --------SPTSPKYSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSY 1908 Score = 54.3 bits (129), Expect = 4e-06 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 14/172 (8%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1671 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1726 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1727 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPS 1785 Query: 368 FGGGLGGGPAGG------AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + G + +Y+P SP+Y TSP +SPS+P + +SP Y Sbjct: 1786 YSPGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSP--NFSPSSPTYSPASPSY 1835 Score = 53.9 bits (128), Expect = 6e-06 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ Y+PG +P + +P+Y+ YSP +P +SPA Sbjct: 1776 SPSYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPS 1834 Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 SP + +S P S T + +P +P+ SP+SP Y+ SP+ Sbjct: 1835 YSPTSPKYSPSS--PKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSPTSPK-- 1890 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMG 460 G + + +Y+P SP+Y TSPGMG Sbjct: 1891 ---GSTYSPTSPSYSPTSPSYSPTSPGMG 1916 Score = 53.5 bits (127), Expect = 8e-06 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P + +PG + +P Y SP +P + SP+Y T P F Sbjct: 1769 SPSYSPTSPSYSP-QSPSYSPGSPSYSPSSPKY--SPT---SPSYSPTSPSYSPTSPN-F 1821 Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + T S SP S + + +P +P+ SPASP Y+ SP++ Sbjct: 1822 SPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKY---- 1877 Query: 383 GGGPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSPG 502 + + Y+P SP Y TSP YSP++P+ + +SPG Sbjct: 1878 ----SPSSPTYSPTSPKGSTYSPTSPS--YSPTSPSYSPTSPG 1914 [20][TOP] >UniRef100_P46804 Spidroin-2 (Fragment) n=1 Tax=Nephila clavipes RepID=SPD2_NEPCL Length = 627 Score = 73.6 bits (179), Expect = 7e-12 Identities = 55/166 (33%), Positives = 72/166 (43%), Gaps = 1/166 (0%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 +ASA A + + GY PG++G PG A AA A A PGG + P Sbjct: 351 SASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAA--------AAAAGPGG--YGPGQ 400 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSP 364 GPGG++P S S+A AA A PG PG+ G + P + P+ PG AA + Sbjct: 401 QGPGGYAPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGYAPGQQGPSGPGSAAAAA 460 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 G GG G P A A++ GY P+ A PG Sbjct: 461 AAAAGPGGYGPAQQGPSGPGIAASAASAGPGGYGPAQQGPAGYGPG 506 Score = 62.0 bits (149), Expect = 2e-08 Identities = 55/178 (30%), Positives = 74/178 (41%), Gaps = 13/178 (7%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 +A+A A P + GY PG++G PG A AA A A PGG + P Sbjct: 245 SAAAAAAAGPGQ-QGPGGYGPGQQGPSGPGSAAAAA---------AAAAGPGG--YGPGQ 292 Query: 188 TGPGGFSPINATASFSPIMSSADAAG------------RATPGRMTPGRSPAGRFTPRMS 331 GPGG+ P S + ++A AAG + PG PG+ G + P + Sbjct: 293 QGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQQGPGGYGPGQQGPGGYGPGSA 352 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 A+ A + GG G G G +G A A+ A A PG GY P +PG Sbjct: 353 SAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAAGPG-GYGPGQQGPGGYAPG 409 Score = 60.1 bits (144), Expect = 8e-08 Identities = 61/190 (32%), Positives = 74/190 (38%), Gaps = 24/190 (12%) Frame = +2 Query: 5 AAASARIARSPAMP---------ESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART 157 AAA+A A P + GY PG++G PG A AA A S + Sbjct: 164 AAAAAAAASGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAA----AASGPGQQG 219 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 PGG + P GPGG+ P S SA AA A PG+ PG G + P+ Sbjct: 220 PGG--YGPGQQGPGGYGPGQQGLSGP---GSAAAAAAAGPGQQGPGGYGPG----QQGPS 270 Query: 338 SPGYAAMSPRFGGGLGG-GPA-GGAGAYAP---------ASPAYMATSPGM----GYSPS 472 PG AA + G GG GP G G Y P ++ A A PG GY P Sbjct: 271 GPGSAAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPG 330 Query: 473 TPALAVSSPG 502 PG Sbjct: 331 QQGPGGYGPG 340 Score = 59.7 bits (143), Expect = 1e-07 Identities = 56/195 (28%), Positives = 79/195 (40%), Gaps = 29/195 (14%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGRE-----------------GQRTPGRAFDAAMTPTYA 133 AAA++ A + + + GY PG++ GQ+ P AA A Sbjct: 112 AAAASAAASAESGQQGPGGYGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAA 171 Query: 134 YSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------ 295 P + + PGG + P GPGG+ P S P ++A AA + PG+ PG Sbjct: 172 SGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPS-GPGSAAAAAAAASGPGQQGPGGYGPGQ 227 Query: 296 RSPAGRFTPRMSPASPGYAAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGM 457 + P G + + PG AA + G GG G G G +G + A+ A A PG Sbjct: 228 QGPGGYGPGQQGLSGPGSAAAAAAAGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAAGPG- 286 Query: 458 GYSPSTPALAVSSPG 502 GY P PG Sbjct: 287 GYGPGQQGPGGYGPG 301 Score = 57.0 bits (136), Expect = 7e-07 Identities = 47/162 (29%), Positives = 65/162 (40%), Gaps = 14/162 (8%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTY--------AYSPARARTPGGTAFSPAYTGPGGFSPI 214 GY G++G PG A A+ + Y P + + PGG + P GPGG+ P Sbjct: 98 GYGQGQQGPSGPGSAAAASAAASAESGQQGPGGYGPGQ-QGPGG--YGPGQQGPGGYGPG 154 Query: 215 NATASFSPIMSSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPGYAAMSPRFGG 376 S P ++A AA + PG+ PG + P G + P+ PG AA + Sbjct: 155 QQGPS-GPGSAAAAAAAASGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAS 213 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 G G GG G Y G+ S A A + PG Sbjct: 214 GPGQQGPGGYGPGQQGPGGYGPGQQGLSGPGSAAAAAAAGPG 255 Score = 57.0 bits (136), Expect = 7e-07 Identities = 67/215 (31%), Positives = 88/215 (40%), Gaps = 51/215 (23%) Frame = +2 Query: 5 AAASARIARSPAM----PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARART 157 AAA+A A P + GY PG++G G A AA Y P + + Sbjct: 275 AAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQ-QG 333 Query: 158 PGGTAFSPAYTGPGGFSPINATAS-------------FSP---------IMSSADAAGRA 271 PGG + P GPGG+ P +A+A+ + P S+A AA A Sbjct: 334 PGG--YGPGQQGPGGYGPGSASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAA 391 Query: 272 TPGRMTPGRSPAGRFTP-RMSPASPGYA-AMSPRFGGGLGG-GPA-GGAGAYAP------ 421 PG PG+ G + P + P+ PG A A + G GG GP G G YAP Sbjct: 392 GPGGYGPGQQGPGGYAPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGYAPGQQGPS 451 Query: 422 -----ASPAYMATSPGMGY-----SPSTPALAVSS 496 A+ A A PG GY PS P +A S+ Sbjct: 452 GPGSAAAAAAAAAGPG-GYGPAQQGPSGPGIAASA 485 Score = 53.5 bits (127), Expect = 8e-06 Identities = 53/174 (30%), Positives = 63/174 (36%), Gaps = 26/174 (14%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPIN------A 220 GY PG++G PG A AA A A PGG + P GPGG+ P Sbjct: 13 GYGPGQQGPSGPGSAAAAAA--------AAAAGPGG--YGPGQQGPGGYGPGQQGPGRYG 62 Query: 221 TASFSPIMSSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 P + AA A G+ PG + P G + P+ PG AA + Sbjct: 63 PGQQGPSGPGSAAAAAAGSGQQGPGGYGPRQQGPGGYGQGQQGPSGPGSAAAASAAASAE 122 Query: 383 GG--GPAG------GAGAYAPASPAYMATSPGMGYSPSTP------ALAVSSPG 502 G GP G G G Y P PG PS P A A S PG Sbjct: 123 SGQQGPGGYGPGQQGPGGYGPGQQGPGGYGPGQ-QGPSGPGSAAAAAAAASGPG 175 [21][TOP] >UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio RepID=UPI0000546D90 Length = 1972 Score = 73.2 bits (178), Expect = 9e-12 Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 6/140 (4%) Frame = +2 Query: 104 FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRA 271 ++ TP Y A+SP+ TPG FSP A + GFSP + ++SP S + G A Sbjct: 1517 WNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPA 1575 Query: 272 TPGRMTPGRSPA--GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445 +P +PG G +P SP SP Y SP GGG + Y+P SP+Y T Sbjct: 1576 SPYIPSPGYITLHFGALSPNYSPTSPAYEPRSP------GGGYTPQSPGYSPTSPSYSPT 1629 Query: 446 SPGMGYSPSTPALAVSSPGY 505 SP YSP++P + +SP Y Sbjct: 1630 SP--SYSPTSPNYSPTSPSY 1647 Score = 65.9 bits (159), Expect = 1e-09 Identities = 56/152 (36%), Positives = 71/152 (46%), Gaps = 6/152 (3%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP------INATAS 229 PG G F +A +P SPA TP T +PAY G +SP A Sbjct: 1488 PGISVAGPTGMFFGSAPSPMSGMSPAM--TPWNTGATPAY---GAWSPSVGSGMTPGAAG 1542 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 FSP +S DA+G +PG SPA TP SP SPG A+ G + + Sbjct: 1543 FSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPASPYIPSPGYITLHFGALSP 1594 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SPAY SPG GY+P +P + +SP Y Sbjct: 1595 NYSPTSPAYEPRSPGGGYTPQSPGYSPTSPSY 1626 Score = 60.1 bits (144), Expect = 8e-08 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 4/151 (2%) Frame = +2 Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY---TGPGGFSPINATAS-F 232 TPG G +PG A +P Y A +P + SPAY + GG++P + S Sbjct: 1565 TPGSPG--SPGPASPYIPSPGYITLHFGALSPNYSPTSPAYEPRSPGGGYTPQSPGYSPT 1622 Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412 SP S + T +P +P SP SP Y+ SP + + + + Sbjct: 1623 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1674 Query: 413 YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1675 YSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1703 Score = 53.5 bits (127), Expect = 8e-06 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ + Y+P ++ +P+Y+ YSP +P + SP YT Sbjct: 1707 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPNYTPT 1762 Query: 197 G-GFSPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 +SP + S+SP S + + TP +P SP +P SP SP Y+ SPR+ Sbjct: 1763 SPSYSP--TSPSYSPTSPSYSPTSPNYTP--TSPNYSPT---SPSYSPTSPSYSPSSPRY 1815 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP+Y TSP Y+P++P+ + SSP Y Sbjct: 1816 -TPQSPTYTPSSPSYSPSSPSYSPTSP--KYTPTSPSYSPSSPEY 1857 [22][TOP] >UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum RepID=Q30BD9_9EUKA Length = 1852 Score = 72.8 bits (177), Expect = 1e-11 Identities = 67/192 (34%), Positives = 94/192 (48%), Gaps = 24/192 (12%) Frame = +2 Query: 2 DAAASARIARSPAMPES---ERGYTPGRE--GQRTPGRAFDAAMTPTYA-----YSPARA 151 D A + A SP + S RGY+P R+PG FD A +P+Y+ YS A Sbjct: 1515 DGATFSPYAESPFVDGSFSPHRGYSPSSPPYSPRSPG--FDYAASPSYSPASPSYSAASP 1572 Query: 152 R----TPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATP---GRMTPGRS 301 R +PG +A SP+Y T P +SP + + S SP S A T +PG S Sbjct: 1573 RYSPTSPGYSASSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPGYS 1631 Query: 302 PAGRF----TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469 P +PR SP SP Y+ SP + G + + +Y+P SP+Y TSP YSP Sbjct: 1632 PTSPSYSPTSPRYSPTSPSYSPTSPSY-SPTSPGYSPTSPSYSPTSPSYSPTSP--SYSP 1688 Query: 470 STPALAVSSPGY 505 ++P+ + +SP Y Sbjct: 1689 TSPSYSPTSPSY 1700 Score = 71.6 bits (174), Expect = 3e-11 Identities = 52/148 (35%), Positives = 71/148 (47%), Gaps = 7/148 (4%) Frame = +2 Query: 83 QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGP---GGFSPIN----ATASFSPI 241 Q TP +D MTP SP G FSP P G FSP ++ +SP Sbjct: 1492 QMTP---YDTHMTPALQQSPGGTPFLDGATFSPYAESPFVDGSFSPHRGYSPSSPPYSPR 1548 Query: 242 MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 421 D A + +P S A +PR SP SPGY+A SP + + + +Y+P Sbjct: 1549 SPGFDYAASPSYSPASPSYSAA---SPRYSPTSPGYSASSPSY-SPTSPSYSPTSPSYSP 1604 Query: 422 ASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP+Y TSP YSP++P+ + +SPGY Sbjct: 1605 TSPSYSPTSP--AYSPTSPSYSPTSPGY 1630 Score = 54.3 bits (129), Expect = 4e-06 Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1669 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSCSPTSPSYSPT 1724 Query: 191 GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + S+SP S A T +P SP+ +P SP+SP Y+ SP + Sbjct: 1725 SPS-YSP--TSPSYSPSSPSCSPAS-PTYSPSSPSYSPS---SPSYSPSSPSYSPSSPSY 1777 Query: 371 GGGLGGGPAGGAGAYAPASPAYM--ATSPGMGYSPSTPALAVSSPGY 505 A Y+P SP + A SP YSP++PA SSP Y Sbjct: 1778 SPSSPQYTPASAN-YSPPSPLHSSPAYSPTSQYSPTSPAYGASSPAY 1823 [23][TOP] >UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis domestica RepID=UPI0000F2BF12 Length = 1970 Score = 72.4 bits (176), Expect = 2e-11 Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 5/154 (3%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 ++SP S + G ++P +PG G +P SP SP Y SP GG Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPTSPAYEPRSP-------GGYTPQ 1611 Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1612 SPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 70.9 bits (172), Expect = 5e-11 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606 Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 G++P + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1664 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1665 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1699 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741 Score = 53.9 bits (128), Expect = 6e-06 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P TP + +P+Y SP +P T SP Y T P + Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790 Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874 [24][TOP] >UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia uvarioides RepID=Q9AXN1_9FLOR Length = 1712 Score = 72.4 bits (176), Expect = 2e-11 Identities = 66/189 (34%), Positives = 84/189 (44%), Gaps = 28/189 (14%) Frame = +2 Query: 23 IARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202 +A SPA ++ G +G+ TPG TP +A P+R G T P+ Sbjct: 1439 MAWSPARGDATPGLHRPMDGRTTPG--LRTGYTPMWA--PSRM---GSTRGGPSAFNVQQ 1491 Query: 203 FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP---------ASPGYA- 352 FSP ASFSP ++ G+ TP +SP G + P MSP ASPG A Sbjct: 1492 FSPSADEASFSPSPATPGNFGQ-NANAYTPLQSPRGDYMPPMSPGGAASPYVSASPGRAS 1550 Query: 353 --AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG----------------YSPSTP 478 A SP + G AG +APASPAY TSP G YSP++P Sbjct: 1551 PYATSPAYPQSPGSYNAGSG--FAPASPAYKVTSPAPGGYGGAYQSPARSPGAQYSPTSP 1608 Query: 479 ALAVSSPGY 505 A +SPGY Sbjct: 1609 AFTPTSPGY 1617 Score = 65.5 bits (158), Expect = 2e-09 Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 14/172 (8%) Frame = +2 Query: 5 AAASARIARSPAMP----ESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGT- 169 +A A + SPA P ++ YTP ++P + M+P A SP + +PG Sbjct: 1495 SADEASFSPSPATPGNFGQNANAYTP----LQSPRGDYMPPMSPGGAASPYVSASPGRAS 1550 Query: 170 --AFSPAYT-GPGGFSPINATASFSPIMS-SADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 A SPAY PG ++ + A SP ++ A G +P RSP ++ SP Sbjct: 1551 PYATSPAYPQSPGSYNAGSGFAPASPAYKVTSPAPGGYGGAYQSPARSPGAQY----SPT 1606 Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY-MATSP----GMGYSPSTP 478 SP + SP + G G G GAY+P P+Y A SP G+ YSP +P Sbjct: 1607 SPAFTPTSPGYSSATGPG-RPGTGAYSPTGPSYNAAASPGYQSGINYSPGSP 1657 [25][TOP] >UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S3M0_OSTLU Length = 1646 Score = 72.4 bits (176), Expect = 2e-11 Identities = 57/166 (34%), Positives = 77/166 (46%), Gaps = 19/166 (11%) Frame = +2 Query: 65 TPGREGQRTPGRAFD---AAMTPTYAYSPARARTP-----------GGTAFSPAYT--GP 196 TPG G TPGR + +P++ SP ++P G AFSP + G Sbjct: 1461 TPGHGGMMTPGRDGTPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMAFSPGMSPGGF 1520 Query: 197 GGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 GG+SP + A + SP S A T +P +P SP SP Y+ SP + Sbjct: 1521 GGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1580 Query: 374 GGLGGGPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 PA + AY+P SPAY TSP YSP++PA + +SP Y Sbjct: 1581 PT---SPAYSPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1621 Score = 70.1 bits (170), Expect = 8e-11 Identities = 53/145 (36%), Positives = 72/145 (49%), Gaps = 2/145 (1%) Frame = +2 Query: 77 EGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-GPGGF-SPINATASFSPIMSS 250 +G RTPG MTP R TPG + SP++ PGG SP + + +FSP Sbjct: 1457 DGSRTPGHG--GMMTP------GRDGTPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDG 1508 Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430 + +PG G SP +P SP SP Y+ SP + + + AY+P SP Sbjct: 1509 MAFSPGMSPGGFG-GYSPT---SPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSP 1556 Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505 AY TSP YSP++PA + +SP Y Sbjct: 1557 AYSPTSP--AYSPTSPAYSPTSPAY 1579 [26][TOP] >UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase II subunit A) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Equus caballus RepID=UPI0001796DD3 Length = 1834 Score = 72.0 bits (175), Expect = 2e-11 Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 5/154 (3%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGISPAMTPWNVGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 ++SP S + G ++P +PG G +P SP SP Y SP GG Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPTSPAYEPRSP-------GGYTPQ 1611 Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1612 SPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 67.8 bits (164), Expect = 4e-10 Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S +P SP +P SP SP Y+ SP Sbjct: 1607 GYTP--QSPSYSPTSPSYSPT--------SPSYSPT---SPNYSPTSPSYSPTSP----- 1648 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1649 ----------SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1678 Score = 54.3 bits (129), Expect = 4e-06 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1723 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S T TP +P SP SP Y SP Sbjct: 1724 SPS-YSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPN 1782 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 + + +Y+P SP+Y TSP GYSP++P +++SP Sbjct: 1783 YSP-TSPSYSPTTPSYSPTSPSYSPTSP--GYSPTSPTYSLTSP 1823 [27][TOP] >UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba castellanii RepID=O00820_ACACA Length = 1569 Score = 72.0 bits (175), Expect = 2e-11 Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 18/166 (10%) Frame = +2 Query: 62 YTPGRE--GQRTPGRAFDAAMTPTYAYS-PARARTPGGT---AFSPAYT------GPGGF 205 Y PG G TP D P + ++ P +PG T ++SP G G F Sbjct: 1400 YEPGATSPGSATPYMGSDERYLPNFFHTTPMYRMSPGATPAASYSPYVDFGEFSPGRGSF 1459 Query: 206 SPINATASFSPIMSSADAAGR----ATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 367 SP ++ S+SP AG ++PG +PG SP+ +P SPASPGY+ SP Sbjct: 1460 SPSPSSPSYSPASPGYSPAGAGYSPSSPGYSPSSPGYSPS---SPGYSPASPGYSPSSPA 1516 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + Y+PASP+Y TSP YSP++P+ + SSP Y Sbjct: 1517 Y--------SPTSPKYSPASPSYSPTSP--AYSPTSPSYSPSSPSY 1552 Score = 60.5 bits (145), Expect = 6e-08 Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 3/141 (2%) Frame = +2 Query: 80 GQRTPGRAFDAAMTPTYAYSPAR-ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSAD 256 G+ +PGR + + +YSPA +P G +SP+ G SP +SP S+ Sbjct: 1450 GEFSPGRGSFSPSPSSPSYSPASPGYSPAGAGYSPSSPGYSPSSP-----GYSP---SSP 1501 Query: 257 AAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430 A+PG +P SP +P+ SPASP Y+ SP + + + +Y+P+SP Sbjct: 1502 GYSPASPGYSPSSPAYSPT---SPKYSPASPSYSPTSPAY--------SPTSPSYSPSSP 1550 Query: 431 AYMATSPGMGYSPSTPALAVS 493 +Y TSP YSP++P+ + S Sbjct: 1551 SYSPTSP--SYSPTSPSYSPS 1569 Score = 55.8 bits (133), Expect = 2e-06 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Frame = +2 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPG-RMTPGRSPAGRFTPRMS- 331 P G + + PG SP +AT TP RM+PG +PA ++P + Sbjct: 1390 PAGGEATAMFYEPGATSPGSATPYMGSDERYLPNFFHTTPMYRMSPGATPAASYSPYVDF 1449 Query: 332 -PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SPG + SP + + +Y+PASP Y + G GYSPS+P + SSPGY Sbjct: 1450 GEFSPGRGSFSP----------SPSSPSYSPASPGY--SPAGAGYSPSSPGYSPSSPGY 1496 [28][TOP] >UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus RepID=B0XMU6_ASPFC Length = 1750 Score = 72.0 bits (175), Expect = 2e-11 Identities = 55/162 (33%), Positives = 77/162 (47%), Gaps = 27/162 (16%) Frame = +2 Query: 101 AFDAAMTPTYAYSPAR---ARTPGGTA-----------FSPAYTGPGGFSP--------- 211 AF P A+SP R A +PGG FSPA T P G+SP Sbjct: 1517 AFIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPAATSPAGYSPSSPFSANPT 1576 Query: 212 ---INATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 + T+S+SP ++ G +P MT PG SPA +P +P SP Y+ SP +G Sbjct: 1577 SPGYSPTSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQA 1630 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P +Y+P SP + TSP YSP++P+ + +SP + Sbjct: 1631 SPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1665 Score = 60.8 bits (146), Expect = 5e-08 Identities = 62/188 (32%), Positives = 79/188 (42%), Gaps = 30/188 (15%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 SPA S GY+P P +PT +YSP +PG SP + GFSP Sbjct: 1556 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMGITSPRFMTSPGFSP 1608 Query: 212 INATASFSPIMSS----ADAAGRATP-----GRMTPGRSPAGR-----------FTPRMS 331 A+ SF+P + + A G+A+P +PG SP +P S Sbjct: 1609 --ASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFS 1666 Query: 332 PASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVS---- 493 P SP Y+ SP GG G P Y P SP + TSP YSP++P A S Sbjct: 1667 PTSPSYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP-QTYSPTSPNFAGSPTSP 1725 Query: 494 ----SPGY 505 SPGY Sbjct: 1726 GGPTSPGY 1733 [29][TOP] >UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2 Length = 1970 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692 Score = 67.8 bits (164), Expect = 4e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741 Score = 53.9 bits (128), Expect = 6e-06 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P TP + +P+Y SP +P T SP Y T P + Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790 Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874 [30][TOP] >UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648 Length = 1913 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692 Score = 67.8 bits (164), Expect = 4e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 55.5 bits (132), Expect = 2e-06 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 6/164 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y+ Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1723 Query: 197 G-GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 + P +S SP S + + R TP +P SP+SP Y+ SP++ Sbjct: 1724 SQSYHPTVVDSSTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY- 1782 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1783 -------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1817 Score = 54.3 bits (129), Expect = 4e-06 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ + Y+P + D++ +P+Y+ YSP+ +P T SP YT P Sbjct: 1710 SPSYSPTSPSYSPTSQSYHPT--VVDSSTSPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1763 Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 S ++ S+SP + + TP +P SP+ +P +P SP Y+ SP+ Sbjct: 1764 SSPSYSPSSPSYSP------TSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK--- 1809 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1810 ------------YSPTSPKYSPTSPT--YSPTTPKYSPTSPTY 1838 [31][TOP] >UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus RepID=UPI0001B7A25C Length = 1968 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1493 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGDGMTPGAAGFSPSA 1552 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1553 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1607 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1608 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1645 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1549 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1608 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1609 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1659 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1660 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1694 Score = 67.4 bits (163), Expect = 5e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1506 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGDGMTPGAAGFSPSAASDASGFSP-GYS 1564 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1565 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1624 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1625 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1673 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 1590 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1646 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1647 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1705 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1706 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1743 Score = 53.9 bits (128), Expect = 6e-06 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P TP + +P+Y SP +P T SP Y T P + Sbjct: 1740 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1792 Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 1793 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1841 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1842 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1876 [32][TOP] >UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8 Length = 1970 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692 Score = 67.8 bits (164), Expect = 4e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741 Score = 53.9 bits (128), Expect = 6e-06 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P TP + +P+Y SP +P T SP Y T P + Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790 Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874 [33][TOP] >UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus familiaris RepID=UPI0001951285 Length = 1969 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 67.8 bits (164), Expect = 4e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 58.9 bits (141), Expect = 2e-07 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 1/159 (0%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 SP+ + Y+P R TP + +P+Y SP +P T SP Y+ SP Sbjct: 1738 SPSYSPTSPNYSPSRPNY-TPTSPSYSPTSPSY--SPT---SPNYTPMSPNYSPTSPNSP 1791 Query: 212 INATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388 + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 1792 --TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY------ 1838 Query: 389 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1839 --TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1873 [34][TOP] >UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus RepID=O35559_CRIGR Length = 1970 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692 Score = 67.8 bits (164), Expect = 4e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741 Score = 53.9 bits (128), Expect = 6e-06 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P TP + +P+Y SP +P T SP Y T P + Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790 Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874 [35][TOP] >UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE Length = 1966 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692 Score = 67.8 bits (164), Expect = 4e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 54.3 bits (129), Expect = 4e-06 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ + YTP ++ +P+Y+ YSP+ +P T SP YT P Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1820 Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 S ++ S+SP + + TP +P SP+ +P +PASP Y+ SP+ Sbjct: 1821 SSPSYSPSSPSYSP------TSPKYTP--TSPSYSPS---SPEYTPASPKYSPTSPK--- 1866 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1867 ------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1895 [36][TOP] >UniRef100_B4DET1 cDNA FLJ53860, highly similar to DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) n=1 Tax=Homo sapiens RepID=B4DET1_HUMAN Length = 855 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 390 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 449 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 450 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 504 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 505 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 542 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 446 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 505 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 506 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 556 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 557 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 591 Score = 67.8 bits (164), Expect = 4e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 403 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 461 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 462 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 521 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 522 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 570 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 487 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 543 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 544 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 602 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 603 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 640 Score = 53.9 bits (128), Expect = 6e-06 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 18/176 (10%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFSPA 184 SP+ + YTP ++ +P+Y+ YSP+ R +P T SP+ Sbjct: 665 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPS 723 Query: 185 YTGPG-GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 Y+ +SP + + SP S T + +P TP+ SP SP Y+ Sbjct: 724 YSPSSPSYSPTSPKYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 783 Query: 359 SPRFG------GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505 SP + G + + Y+P SP Y TSP G YSP++P + +SP Y Sbjct: 784 SPVYTPTSPKYSPTGPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 839 [37][TOP] >UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN Length = 1970 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692 Score = 67.8 bits (164), Expect = 4e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741 Score = 54.3 bits (129), Expect = 4e-06 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ + YTP ++ +P+Y+ YSP+ +P T SP YT P Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1820 Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 S ++ S+SP A+ + TP +P SP+ +P +P SP Y+ SP+ Sbjct: 1821 SSPSYSPSSPSYSP------ASPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK--- 1866 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1867 ------------YSPTSPKYSPTSPT--YSPTTPKYSPTSPTY 1895 Score = 54.3 bits (129), Expect = 4e-06 Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR-TPGGTAFSPAYTGPGGFS 208 SP+ S YTP + TP + +P+Y SPA + TP ++SP+ S Sbjct: 1801 SPSYSPSSPRYTP-QSPTYTPSSPSYSPSSPSY--SPASPKYTPTSPSYSPSSPEYTPTS 1857 Query: 209 PINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 P + S +SP S + T TP SP +P SP SP Y SP++ Sbjct: 1858 PKYSPTSPKYSPT-SPKYSPTSPTYSPTTPKYSPT---SPTYSPTSPVYTPTSPKYSP-T 1912 Query: 383 GGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505 + + Y+P SP Y TSP G YSP++P + +SP Y Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1954 Score = 53.9 bits (128), Expect = 6e-06 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P TP + +P+Y SP +P T SP Y T P + Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790 Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPASPKY---- 1839 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874 [38][TOP] >UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus RepID=A1CNZ4_ASPCL Length = 1765 Score = 71.6 bits (174), Expect = 3e-11 Identities = 55/163 (33%), Positives = 75/163 (46%), Gaps = 28/163 (17%) Frame = +2 Query: 101 AFDAAMTPTYAYSP---ARARTPGGTA-----------FSPAYTGPGGFSP--------- 211 A+ P A+SP A A TPGG FSPA T P G+SP Sbjct: 1520 AYIGTPDPDSAFSPIGQAGAETPGGFTEYQPTGGFGGGFSPAATSPAGYSPTSPFSANPT 1579 Query: 212 ---INATASFSPIMSSADAAG-RATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 + T S+SPI + +PG MT PG SP +P +P SP Y+ SP +G Sbjct: 1580 SPGYSPTTSYSPIAPGITSPRFNTSPGFMTSPGFSPV---SPSFAPTSPAYSPTSPAYGQ 1636 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P +Y+P SP + TSP YSP++P+ + +SP + Sbjct: 1637 ASPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1672 Score = 58.5 bits (140), Expect = 2e-07 Identities = 63/198 (31%), Positives = 83/198 (41%), Gaps = 32/198 (16%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA----F 175 AA++ SP P S +PG +PT +YSP PG T+ Sbjct: 1561 AATSPAGYSPTSPFSANPTSPG--------------YSPTTSYSPI---APGITSPRFNT 1603 Query: 176 SPAYTGPGGFSPINAT-ASFSPIMS-SADAAGRATP-----GRMTPGRSPAGR------- 313 SP + GFSP++ + A SP S ++ A G+A+P +PG SP Sbjct: 1604 SPGFMTSPGFSPVSPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSP 1663 Query: 314 ----FTPRMSPASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPST 475 +P SP SP Y+ SP GG G P Y P SP + TSP YSP++ Sbjct: 1664 SFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP-QTYSPTS 1722 Query: 476 PALAVS--------SPGY 505 P A S SPGY Sbjct: 1723 PNFAGSPTSPGGPTSPGY 1740 [39][TOP] >UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus RepID=RPB1_MOUSE Length = 1970 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692 Score = 67.8 bits (164), Expect = 4e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 54.3 bits (129), Expect = 4e-06 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ + YTP ++ +P+Y+ YSP+ +P T SP YT P Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1820 Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 S ++ S+SP + + TP +P SP+ +P +PASP Y+ SP+ Sbjct: 1821 SSPSYSPSSPSYSP------TSPKYTP--TSPSYSPS---SPEYTPASPKYSPTSPK--- 1866 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1867 ------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1895 [40][TOP] >UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires RepID=RPB1_HUMAN Length = 1970 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692 Score = 67.8 bits (164), Expect = 4e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741 Score = 53.9 bits (128), Expect = 6e-06 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P TP + +P+Y SP +P T SP Y T P + Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790 Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874 [41][TOP] >UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2C Length = 1888 Score = 71.2 bits (173), Expect = 4e-11 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214 PG G F +A +P SPA TP +PAY G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548 Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205 P + G TPG G +P A DA+ +P YSPA + TPG SP PGG Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SP S+SP ++ A +PG TP +P SP SP Y+ SP + Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670 [42][TOP] >UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B29 Length = 1891 Score = 71.2 bits (173), Expect = 4e-11 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214 PG G F +A +P SPA TP +PAY G GFSP Sbjct: 1460 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1517 Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1518 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1573 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1574 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1611 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205 P + G TPG G +P A DA+ +P YSPA + TPG SP PGG Sbjct: 1501 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1557 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SP S+SP ++ A +PG TP +P SP SP Y+ SP + Sbjct: 1558 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1604 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1605 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1639 Score = 54.7 bits (130), Expect = 3e-06 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T Sbjct: 1678 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1734 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+ Sbjct: 1735 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1787 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1788 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1816 [43][TOP] >UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B28 Length = 1908 Score = 71.2 bits (173), Expect = 4e-11 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214 PG G F +A +P SPA TP +PAY G GFSP Sbjct: 1477 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1534 Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1535 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1590 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1591 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1628 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205 P + G TPG G +P A DA+ +P YSPA + TPG SP PGG Sbjct: 1518 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1574 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SP S+SP ++ A +PG TP +P SP SP Y+ SP + Sbjct: 1575 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1621 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1622 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1656 Score = 54.7 bits (130), Expect = 3e-06 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T Sbjct: 1695 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1751 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+ Sbjct: 1752 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1804 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1805 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1833 [44][TOP] >UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B24 Length = 1924 Score = 71.2 bits (173), Expect = 4e-11 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214 PG G F +A +P SPA TP +PAY G GFSP Sbjct: 1493 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1550 Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1551 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1606 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1607 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1644 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205 P + G TPG G +P A DA+ +P YSPA + TPG SP PGG Sbjct: 1534 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1590 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SP S+SP ++ A +PG TP +P SP SP Y+ SP + Sbjct: 1591 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1637 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1638 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1672 Score = 54.7 bits (130), Expect = 3e-06 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T Sbjct: 1711 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1767 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+ Sbjct: 1768 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1820 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1821 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1849 [45][TOP] >UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B21 Length = 1922 Score = 71.2 bits (173), Expect = 4e-11 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214 PG G F +A +P SPA TP +PAY G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548 Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205 P + G TPG G +P A DA+ +P YSPA + TPG SP PGG Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SP S+SP ++ A +PG TP +P SP SP Y+ SP + Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670 Score = 54.7 bits (130), Expect = 3e-06 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T Sbjct: 1709 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1765 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+ Sbjct: 1766 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1818 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1819 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1847 [46][TOP] >UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B20 Length = 1923 Score = 71.2 bits (173), Expect = 4e-11 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214 PG G F +A +P SPA TP +PAY G GFSP Sbjct: 1492 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1549 Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1550 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1605 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1606 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205 P + G TPG G +P A DA+ +P YSPA + TPG SP PGG Sbjct: 1533 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1589 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SP S+SP ++ A +PG TP +P SP SP Y+ SP + Sbjct: 1590 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1636 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1637 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671 Score = 54.7 bits (130), Expect = 3e-06 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1766 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+ Sbjct: 1767 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1819 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1820 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1848 [47][TOP] >UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B17 Length = 1788 Score = 71.2 bits (173), Expect = 4e-11 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214 PG G F +A +P SPA TP +PAY G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548 Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205 P + G TPG G +P A DA+ +P YSPA + TPG SP PGG Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SP S+SP ++ A +PG TP +P SP SP Y+ SP + Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670 Score = 53.9 bits (128), Expect = 6e-06 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178 A SP+ + Y P G TP + +P+Y+ YSP +P + S Sbjct: 1587 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1646 Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 P+Y T P +SP + + S SP S + T +P +P SP SP Y Sbjct: 1647 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1705 Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475 + SP + + + +Y+P SP+Y TSP YSP++ Sbjct: 1706 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1765 Query: 476 PALAVSSPGY 505 P+ + +SP Y Sbjct: 1766 PSYSPTSPNY 1775 [48][TOP] >UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B16 Length = 1922 Score = 71.2 bits (173), Expect = 4e-11 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214 PG G F +A +P SPA TP +PAY G GFSP Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548 Query: 215 NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205 P + G TPG G +P A DA+ +P YSPA + TPG SP PGG Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SP S+SP ++ A +PG TP +P SP SP Y+ SP + Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670 Score = 54.7 bits (130), Expect = 3e-06 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T Sbjct: 1709 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1765 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + SP S + + TP +P SP+ +P +P SP Y+ SP+ Sbjct: 1766 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1818 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1819 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1847 [49][TOP] >UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN Length = 1935 Score = 71.2 bits (173), Expect = 4e-11 Identities = 56/167 (33%), Positives = 75/167 (44%), Gaps = 21/167 (12%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217 PG G F +A +P SPA + TP A+SP+ G GFSP Sbjct: 1456 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1515 Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ + FSP S A + +PG P SP G +P SP SP Y SP Sbjct: 1516 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1570 Query: 380 LGGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1571 --GGYTPQSPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYSPTSPSY 1615 Score = 70.1 bits (170), Expect = 8e-11 Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1512 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1571 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 G++P + S+SP S T +P S +P SP SP Y+ SP + Sbjct: 1572 GYTP--QSPSYSPTSPSYSP----TSPSYSPTSSNYSPTSPSYSPTSPSYSPTSPSY--- 1622 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1657 Score = 68.6 bits (166), Expect = 2e-10 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP + Sbjct: 1469 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1527 Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349 ++SP S + G ++P G M+P SP G +TP+ SP SP Y Sbjct: 1528 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1587 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1588 SPTSPSYSP-TSSNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1636 Score = 59.7 bits (143), Expect = 1e-07 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 12/172 (6%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178 A SP+ + Y P G TP + +P+Y+ YSP + +P + S Sbjct: 1553 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYSPTS 1612 Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 P+Y T P +SP + + S SP S + T +P +P SP SP Y Sbjct: 1613 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1672 SPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPNY 1720 Score = 55.5 bits (132), Expect = 2e-06 Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ S YTP + TP + +P+Y+ Y+P +P + SP YT Sbjct: 1766 SPSYSPSSPRYTP-QSPTYTPSSPSYSPSSPSYSPTSPKYTPT---SPPYSPSSPEYTPT 1821 Query: 197 GG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 FSP + +SP G T TP SP +P SP SP Y SP++ Sbjct: 1822 SPKFSP--TSPKYSPTSPKYSPTG-PTYSPTTPKYSPT---SPTYSPTSPVYTPTSPKYS 1875 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505 + + Y+P SP Y TSP G YSP++P + +SP Y Sbjct: 1876 P-TSPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1919 [50][TOP] >UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis briggsae RepID=RPB1_CAEBR Length = 1853 Score = 71.2 bits (173), Expect = 4e-11 Identities = 49/158 (31%), Positives = 70/158 (44%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 SPA G TP G +P M+P+ +SPA G + F+ GG+SP Sbjct: 1503 SPAHSPWNSGVTPNYSGPWSP----TGGMSPSAGFSPAGNLDGGASPFNE-----GGWSP 1553 Query: 212 INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 391 + + A G +PG +P +P SP SP Y+ SP G Sbjct: 1554 ASPGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVS 1613 Query: 392 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1614 P-----SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1644 Score = 61.2 bits (147), Expect = 4e-08 Identities = 55/172 (31%), Positives = 77/172 (44%), Gaps = 12/172 (6%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAA-MTPTY-AYSPARARTPGGTAFSPAY--TG 193 A SP P + G +PG +PG + + +PT +YSP G + SP+Y T Sbjct: 1562 ALSPRTP-AYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTS 1620 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + S SP S + T +P +P SP SP Y+ SPR+ Sbjct: 1621 PS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1679 Query: 371 G------GGLGGGPAGGAGAYAPASPAYMATSPGM-GYSPSTPALAVSSPGY 505 + + Y+P SP Y TSP GYSPS+P + SSP Y Sbjct: 1680 SPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTY 1731 Score = 58.5 bits (140), Expect = 2e-07 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 2/133 (1%) Frame = +2 Query: 113 AMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP 292 A +P+ +SPA + P + +P Y+GP +SP + +AG + G + Sbjct: 1495 AGSPSREFSPAHS--PWNSGVTPNYSGP-----------WSPTGGMSPSAGFSPAGNLDG 1541 Query: 293 GRSPAGRFTPRMSPASPG--YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 466 G SP SPASPG A+SPR G P G Y+PASP + TSP YS Sbjct: 1542 GASPFNE--GGWSPASPGDPLGALSPRTPAYGGMSP----GVYSPASPGFSMTSP--HYS 1593 Query: 467 PSTPALAVSSPGY 505 P++P+ + +SP + Sbjct: 1594 PTSPSYSPTSPAH 1606 Score = 55.8 bits (133), Expect = 2e-06 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP P E GY+P + +P + +P+Y+ YSP +P + SP YT Sbjct: 1708 SPTSPSYE-GYSPSSP-KYSPSSPTYSPTSPSYSPTSPQYSPT---SPQYSPSSPTYTP- 1761 Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 ++ +++P A ++ + +P +P SP +P +P+SP Y+ SP + Sbjct: 1762 -------SSPTYNPTSPRAFSSPQYSP--TSPTYSPT---SPSYTPSSPQYSPTSPTYTP 1809 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P G + Y+P+SP Y +SP YSP++P+ + SSP Y Sbjct: 1810 SPADQP-GTSNQYSPSSPTYSPSSPT--YSPASPSYSPSSPTY 1849 [51][TOP] >UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis domestica RepID=UPI0000F2BF13 Length = 1932 Score = 70.9 bits (172), Expect = 5e-11 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1509 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1568 Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 G++P + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1569 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1626 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1627 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1661 Score = 66.6 bits (161), Expect = 9e-10 Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Frame = +2 Query: 155 TPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 TPG FSP A + GFSP + ++SP S + G ++P +PG G +P S Sbjct: 1502 TPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYS 1556 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SP Y SP GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1557 PTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1605 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 1550 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1606 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1607 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1665 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1666 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1703 Score = 53.9 bits (128), Expect = 6e-06 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P TP + +P+Y SP +P T SP Y T P + Sbjct: 1700 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1752 Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 1753 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1801 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1802 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1836 [52][TOP] >UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus RepID=UPI0001B7A25B Length = 1932 Score = 70.9 bits (172), Expect = 5e-11 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 1509 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1568 Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 G++P + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1569 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1626 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1627 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1661 Score = 66.6 bits (161), Expect = 9e-10 Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Frame = +2 Query: 155 TPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 TPG FSP A + GFSP + ++SP S + G ++P +PG G +P S Sbjct: 1502 TPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYS 1556 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SP Y SP GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1557 PTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1605 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 1550 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1606 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1607 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1665 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1666 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1703 Score = 53.9 bits (128), Expect = 6e-06 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P TP + +P+Y SP +P T SP Y T P + Sbjct: 1700 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1752 Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 1753 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1801 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1802 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1836 [53][TOP] >UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U396_PHYPA Length = 1742 Score = 70.9 bits (172), Expect = 5e-11 Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Frame = +2 Query: 35 PAMPESERGYTPGREGQ-RTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 P+ ++ G TP R TP D M+P+Y SP+ +P A Y G FSP Sbjct: 1481 PSFEATDYGMTPSRTPMIGTPHN--DGMMSPSYLLSPSLRASPLSDAQFSPYVGNMPFSP 1538 Query: 212 INATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 ++ +SP ++PG ++PG SP +P SP SPGY+ SP Sbjct: 1539 --SSPGYSP----------SSPGYSPLSPGYSPT---SPGYSPTSPGYSPTSP------- 1576 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G + + Y+P SP+Y TSP GYSP++P+ + +SP Y Sbjct: 1577 -GYSPTSPGYSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1613 Score = 65.9 bits (159), Expect = 1e-09 Identities = 60/185 (32%), Positives = 83/185 (44%), Gaps = 17/185 (9%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGYTPGREGQR--TPGRA-FDAAMTPTY-AYSPARA----RT 157 DA S + P P S GY+P G +PG + +PT YSP + Sbjct: 1524 DAQFSPYVGNMPFSPSSP-GYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTS 1582 Query: 158 PGGTAFSPAY--TGPG------GFSPINAT-ASFSPIMSSADAAGRATPGRMTPGRSPAG 310 PG + SP+Y T PG +SP + + A SP S + T +P Sbjct: 1583 PGYSPTSPSYSPTSPGYSPTSPSYSPTSPSYAPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1642 Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490 +P SP SP Y+ SP + A + AY+P SP+Y TSPG YSP++P+ + Sbjct: 1643 PTSPSYSPTSPSYSPTSPAYSP-TSPSYAPTSPAYSPTSPSYSPTSPG--YSPTSPSYSP 1699 Query: 491 SSPGY 505 SSP Y Sbjct: 1700 SSPSY 1704 Score = 61.6 bits (148), Expect = 3e-08 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP + Y+P G ++ +P+YA YSP +P + SP+Y T Sbjct: 1582 SPGYSPTSPSYSPTSPGYSPTSPSYSPT-SPSYAPTSPSYSPT---SPSYSPTSPSYSPT 1637 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S A T P +P SP SPGY+ SP Sbjct: 1638 SPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPSYAPTSPAYSPTSPSYSPTSPGYSPTSPS 1696 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SPAY TSP YSPS+P+ + +SP Y Sbjct: 1697 YSPS-SPSYSPTSPSYSPTSPAYSPTSPR--YSPSSPSYSPTSPSY 1739 [54][TOP] >UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis RepID=Q4P7Q0_USTMA Length = 1774 Score = 70.9 bits (172), Expect = 5e-11 Identities = 66/186 (35%), Positives = 83/186 (44%), Gaps = 19/186 (10%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTP--------TYAYSPARARTP 160 A + A SP P GY P G T M+P + AYSP R Sbjct: 1547 AQSPAGYGFSPVSP----GYVPTSPGYATSPAGALGGMSPWTGNMGATSPAYSPTSPRIF 1602 Query: 161 GGTAFSPAY--TGPG------GFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGR 313 GG A SP+Y T P +SP + A A +SP S A G AT + +P Sbjct: 1603 GG-ATSPSYSPTSPSYSPASPNYSPSSPAGAGYSP-SSPAGRYGAATSPQYSPASPKFSP 1660 Query: 314 FTPRMSPASPGYAAMSPRFG--GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487 +P SPASP Y SP + G GG G ++P SPAY TSP YSP++PA + Sbjct: 1661 TSPNYSPASPAYTPTSPVYSPTSPAMAGRGGGKG-FSPTSPAYSPTSPQ--YSPASPAFS 1717 Query: 488 VSSPGY 505 +SP Y Sbjct: 1718 PTSPQY 1723 Score = 67.8 bits (164), Expect = 4e-10 Identities = 52/142 (36%), Positives = 64/142 (45%), Gaps = 19/142 (13%) Frame = +2 Query: 137 SPARARTPGGTAFSPAY-----TGPG-GFSPINATASFSPIMSSADAAG--------RAT 274 +P A++P G FSP T PG SP A SP + A R Sbjct: 1543 TPLGAQSPAGYGFSPVSPGYVPTSPGYATSPAGALGGMSPWTGNMGATSPAYSPTSPRIF 1602 Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYM 439 G +P SP +P SPASP Y+ SP G PAG GA Y+PASP + Sbjct: 1603 GGATSPSYSPT---SPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKFS 1659 Query: 440 ATSPGMGYSPSTPALAVSSPGY 505 TSP YSP++PA +SP Y Sbjct: 1660 PTSP--NYSPASPAYTPTSPVY 1679 Score = 54.3 bits (129), Expect = 4e-06 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 7/162 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR----TPGGTAFSPAYTGPG 199 SP+ P GY+P +P + AA +P Y SPA + +P + SPAYT Sbjct: 1625 SPSSPAGA-GYSPS-----SPAGRYGAATSPQY--SPASPKFSPTSPNYSPASPAYTPT- 1675 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 SP+ + S P M+ +P +P SP +P+ SPASP ++ SP++ Sbjct: 1676 --SPVYSPTS--PAMAGRGGGKGFSP--TSPAYSPT---SPQYSPASPAFSPTSPQYS-- 1724 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGY---SPSTPALAVSS 496 PA + Y+P SP Y TSP MG S P A +S Sbjct: 1725 ----PA--SPQYSPTSPQYSPTSPAMGMGGASAGGPGAAAAS 1760 [55][TOP] >UniRef100_A2QAT7 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QAT7_ASPNC Length = 1747 Score = 70.9 bits (172), Expect = 5e-11 Identities = 56/141 (39%), Positives = 72/141 (51%), Gaps = 6/141 (4%) Frame = +2 Query: 101 AFDAAMTPTYAYSPAR---ARTPGG-TAFSPAYTGPGGFSPINATASFSPIMSSADAAGR 268 A+ P +SP R A TPGG T + P GGFSP A+ SP S + Sbjct: 1516 AYIGTPDPESNFSPIRQAGAETPGGFTEYQPTGGFGGGFSP----AATSPAGYSPSSPFS 1571 Query: 269 ATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF-GGGLGGGPAGGAGAYAPASPAYMAT 445 A P +PG SP + SP SPG A SPRF G PA + ++AP SPAY T Sbjct: 1572 ANP--TSPGYSPTSSY----SPTSPGMAITSPRFMSTSPGFSPA--SPSFAPTSPAYSPT 1623 Query: 446 SPGMGY-SPSTPALAVSSPGY 505 SP G SP++P+ + +SPG+ Sbjct: 1624 SPAYGQASPTSPSYSPTSPGF 1644 Score = 64.7 bits (156), Expect = 3e-09 Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 14/172 (8%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SPA S GY+P P +PT +YSP +PG SP + T PG F Sbjct: 1555 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMAITSPRFMSTSPG-F 1606 Query: 206 SPINATASFSPIMSS----ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 SP A+ SF+P + + A G+A+P +P SP +P SP SP Y+ SP F Sbjct: 1607 SP--ASPSFAPTSPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPSFS 1659 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMG--------YSPSTPALAVSSPGY 505 PA + A++P SP+Y TSP +G SP++P +SPG+ Sbjct: 1660 ------PA--SPAFSPTSPSYSPTSPAVGGVGRHLSPTSPTSPKYTPTSPGW 1703 [56][TOP] >UniRef100_A1D1U9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D1U9_NEOFI Length = 1750 Score = 70.9 bits (172), Expect = 5e-11 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 27/162 (16%) Frame = +2 Query: 101 AFDAAMTPTYAYSPAR---ARTPGGTA-----------FSPAYTGPGGFSP--------- 211 A+ P A+SP R A +PGG FSPA T P G+SP Sbjct: 1517 AYIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPAATSPAGYSPSSPFSANPT 1576 Query: 212 ---INATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 + T+S+SP ++ G +P MT PG SPA +P +P SP Y+ SP +G Sbjct: 1577 SPGYSPTSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQA 1630 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P +Y+P SP + TSP YSP++P+ + +SP + Sbjct: 1631 SPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1665 Score = 60.8 bits (146), Expect = 5e-08 Identities = 62/188 (32%), Positives = 79/188 (42%), Gaps = 30/188 (15%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 SPA S GY+P P +PT +YSP +PG SP + GFSP Sbjct: 1556 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMGITSPRFMTSPGFSP 1608 Query: 212 INATASFSPIMSS----ADAAGRATP-----GRMTPGRSPAGR-----------FTPRMS 331 A+ SF+P + + A G+A+P +PG SP +P S Sbjct: 1609 --ASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFS 1666 Query: 332 PASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVS---- 493 P SP Y+ SP GG G P Y P SP + TSP YSP++P A S Sbjct: 1667 PTSPSYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP-QTYSPTSPNFAGSPTSP 1725 Query: 494 ----SPGY 505 SPGY Sbjct: 1726 GGPTSPGY 1733 [57][TOP] >UniRef100_P11414 DNA-directed RNA polymerase II subunit RPB1 (Fragment) n=1 Tax=Cricetulus griseus RepID=RPB1_CRIGR Length = 467 Score = 70.9 bits (172), Expect = 5e-11 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199 SP+ G++PG TPG + Y SP A +P + SPAY PG Sbjct: 44 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 103 Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 G++P + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 104 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 161 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 162 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 196 Score = 66.6 bits (161), Expect = 9e-10 Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Frame = +2 Query: 155 TPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 TPG FSP A + GFSP + ++SP S + G ++P +PG G +P S Sbjct: 37 TPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYS 91 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SP Y SP GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 92 PTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 140 Score = 61.6 bits (148), Expect = 3e-08 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP+ + Y P G TP + +P+Y+ YSP +P + SP+Y Sbjct: 85 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 141 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 142 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 200 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 201 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 238 Score = 53.9 bits (128), Expect = 6e-06 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P TP + +P+Y SP +P T SP Y T P + Sbjct: 235 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 287 Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + S+SP S + ++ R TP +P +P+ +P SP+SP Y+ SP++ Sbjct: 288 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 336 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 337 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 371 [58][TOP] >UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2B Length = 1892 Score = 70.5 bits (171), Expect = 6e-11 Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 5/154 (3%) Frame = +2 Query: 59 GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223 G P G +P ++ TP Y A+SP+ TPG FSP A + GFSP Sbjct: 1499 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP---- 1554 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 +SP S TPG +PG SP G +P SP SP Y SP GG Sbjct: 1555 -GYSPAWSP-------TPG--SPG-SPGGAMSPSYSPTSPAYEPRSP-------GGYTPQ 1596 Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1597 SPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1628 Score = 67.0 bits (162), Expect = 7e-10 Identities = 57/169 (33%), Positives = 78/169 (46%), Gaps = 15/169 (8%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPG-----GTAFSPAYT----- 190 P G TPG G +P A DA+ +P YSPA + TPG G A SP+Y+ Sbjct: 1528 PSVGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGGAMSPSYSPTSPA 1584 Query: 191 ----GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 PGG++P + S+SP S +P SP +P SP SP Y+ Sbjct: 1585 YEPRSPGGYTP--QSPSYSPTSPSYSPT--------SPSYSPT---SPNYSPTSPSYSPT 1631 Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1632 SP---------------SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1663 Score = 54.3 bits (129), Expect = 4e-06 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1646 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1701 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P R +P SP SP Y+ SP+ Sbjct: 1702 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPK 1760 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1761 Y--------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1796 [59][TOP] >UniRef100_Q99367 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max RepID=Q99367_SOYBN Length = 494 Score = 70.5 bits (171), Expect = 6e-11 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 9/157 (5%) Frame = +2 Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220 Y G + TP R+ + M+P+Y SP +P A Y G FSP + Sbjct: 148 YMDGLDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSP-TS 206 Query: 221 TASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394 + +SP S+ ++PG +PG SP +P SP SPGY+ SP + G Sbjct: 207 SPGYSP---SSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGY 259 Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + AY+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 260 SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 294 Score = 57.4 bits (137), Expect = 5e-07 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 19/175 (10%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP + Y+P G A+ +P+Y+ YSP +P + SP+Y T Sbjct: 242 SPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 297 Query: 191 GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + A + SP S + T +P +P SP SP Y+ SP Sbjct: 298 SPS-YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 356 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSP 499 + G + + +Y+P SP+Y TSP + YSPS+P L+ SSP Sbjct: 357 YSP-TSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSP 410 Score = 57.0 bits (136), Expect = 7e-07 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 12/170 (7%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193 SP+ + Y+P A+ A +PT +YSP +P + SP+Y T Sbjct: 284 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPT---SPSYSPTSPSYSPTS 340 Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + S+SP ++ A +PG +P SP +P SP SP Y S + Sbjct: 341 PS-YSP--TSPSYSP---TSPAYSPTSPGYSPTSPSYSPT---SPSYSPTSPSYNPQSAK 391 Query: 368 FGGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + L P+ + Y+P SP Y TSP YSP++P+ + SSP Y Sbjct: 392 YSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 439 Score = 55.5 bits (132), Expect = 2e-06 Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 16/171 (9%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y AYSP +PG + SP+Y T Sbjct: 319 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 374 Query: 191 GPGGFSPINAT-----ASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASP 343 P +SP + + A +SP ++ + ++ R +P +P SP +P SP SP Sbjct: 375 SPS-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPT---SPSYSPTSP 430 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 Y+ SP + +G + Y+P+SP + SP GYSPS P + SS Sbjct: 431 SYSPSSPTYSPSSPYN-SGVSPDYSPSSPQF---SPSTGYSPSQPGYSPSS 477 [60][TOP] >UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus RepID=B0XAQ9_CULQU Length = 1874 Score = 70.5 bits (171), Expect = 6e-11 Identities = 53/154 (34%), Positives = 72/154 (46%), Gaps = 5/154 (3%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAY----SPARARTPGGTAFSP-AYTGPGGFSPINAT 223 G TP TP + + TP Y P TPGG +FSP A + G SP Sbjct: 1478 GATPSMSPAMTP---WQQSQTPGYGEWSPSGPPSGMTPGGPSFSPSAQSDASGMSP---- 1530 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 S+SP+ S + G + M+P + +P SP+SP YAA SP G Sbjct: 1531 -SWSPMPGSPSSPGPS----MSPYFPSSPSASPSYSPSSPNYAAASP----------GGA 1575 Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1576 SPGYSPTSPSYSPTSP--NYSPTSPRYSPTSPNY 1607 Score = 65.1 bits (157), Expect = 3e-09 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 18/176 (10%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGT---------AFSPA 184 SP+ P S G TPG ++ + M+P+++ P +PG + + SP+ Sbjct: 1502 SPSGPPS--GMTPGGPSFSPSAQSDASGMSPSWSPMPGSPSSPGPSMSPYFPSSPSASPS 1559 Query: 185 YT---------GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 Y+ PGG SP + SP S T R +P +P SP Sbjct: 1560 YSPSSPNYAAASPGGASP--GYSPTSPSYSPTSPNYSPTSPRYSPTSPNYSPTSPNYSPT 1617 Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP Y+ SP + P+ + AY+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1618 SPSYSPTSPLYSPTATYAPS--SPAYSPTSPSYSPTSP---YSPTSPSYSPTSPAY 1668 Score = 60.1 bits (144), Expect = 8e-08 Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 5/134 (3%) Frame = +2 Query: 119 TPTYA-----YSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGR 283 +P+Y+ YSP P A+SP T P +SP + + SP S A T Sbjct: 1618 SPSYSPTSPLYSPTATYAPSSPAYSP--TSP-SYSPTSPYSPTSPSYSPTSPAYSPTSPS 1674 Query: 284 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 463 +P +P SP SP Y+ SP + Y+P+SP Y TSP Y Sbjct: 1675 YSPSSPSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPN-YSPSSPHYSPTSP--SY 1731 Query: 464 SPSTPALAVSSPGY 505 SPS+P + +SP Y Sbjct: 1732 SPSSPKYSPTSPSY 1745 Score = 59.3 bits (142), Expect = 1e-07 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 13/169 (7%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARAR----TPGGTAFSPAY--T 190 SPA + Y+P +P + +PT AYSP +P + SP+Y T Sbjct: 1638 SPAYSPTSPSYSP-----TSPYSPTSPSYSPTSPAYSPTSPSYSPSSPSYSPTSPSYSPT 1692 Query: 191 GPGGFSPIN-----ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352 P +SP + AT S+SP + + ++ +P +P SP+ +P+ SP SP Y+ Sbjct: 1693 SPS-YSPTSPNYTPATPSYSPTSPNYSPSSPHYSP--TSPSYSPS---SPKYSPTSPSYS 1746 Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 SP + GG+ Y PASP Y TSP YSP++P+ + SSP Sbjct: 1747 PTSPSY---------GGSPQYTPASPQYSPTSP--KYSPTSPSYSPSSP 1784 Score = 56.2 bits (134), Expect = 1e-06 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 28/186 (15%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ + Y+P + A TP+Y+ YSP+ +P + SP+Y+ Sbjct: 1679 SPSYSPTSPSYSPTSPSYSPTSPNYTPA-TPSYSPTSPNYSPS---SPHYSPTSPSYSPS 1734 Query: 197 GG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 +SP + S+SP S + + TP +P SP +P+ SP SP Y+ SP+ Sbjct: 1735 SPKYSP--TSPSYSPTSPSYGGSPQYTPA--SPQYSPT---SPKYSPTSPSYSPSSPQHS 1787 Query: 374 GGLGGGP----------------------AGGAGAYAPASPAYMATSPGMGYSPSTPALA 487 G G + G+ Y+P SP Y TSP YSPS+PA + Sbjct: 1788 PGSSGSNFMVNSPTYSPTTARYSPNMSSYSPGSQKYSPTSPVYTPTSP--HYSPSSPAYS 1845 Query: 488 VSSPGY 505 + GY Sbjct: 1846 PTGQGY 1851 [61][TOP] >UniRef100_C8VQG7 DNA-directed RNA polymerase (EC 2.7.7.6) [Source:UniProtKB/TrEMBL;Acc:Q873Q6] n=2 Tax=Emericella nidulans RepID=C8VQG7_EMENI Length = 1745 Score = 70.5 bits (171), Expect = 6e-11 Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 26/161 (16%) Frame = +2 Query: 101 AFDAAMTPTYAYSPAR---ARTPGGTA----------FSPAYTGPGGFSP---------- 211 A+ P +SP R A TPGG FSPA T P G+SP Sbjct: 1517 AYIGTPDPDSNFSPIRQAGAETPGGFTEYQPSGGFGGFSPAATSPAGYSPSSPFSANPTS 1576 Query: 212 --INATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 + T+S+SP ++ G +P MT PG SPA +P +P SP Y+ SP +G Sbjct: 1577 PGYSPTSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQAS 1630 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P +Y+P SP + TSP YSP++P+ + +SP + Sbjct: 1631 PTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPTSPAF 1664 Score = 65.9 bits (159), Expect = 1e-09 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 11/169 (6%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 SPA S GY+P P +PT +YSP +PG SP + GFSP Sbjct: 1555 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMGITSPRFMTSPGFSP 1607 Query: 212 INATASFSPIMSS----ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 A+ SF+P + + A G+A+P +P SP +P SP SP Y+ SP F Sbjct: 1608 --ASPSFAPTSPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPSF--- 1657 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMG-------YSPSTPALAVSSPGY 505 + + A++P SP+Y TSP +G SP++P +SPG+ Sbjct: 1658 -----SPTSPAFSPTSPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPGW 1701 Score = 53.5 bits (127), Expect = 8e-06 Identities = 49/158 (31%), Positives = 65/158 (41%), Gaps = 12/158 (7%) Frame = +2 Query: 14 SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY-- 187 S R SP + + P A+ A + +YSP +PG + SP Y Sbjct: 1596 SPRFMTSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPT---SPGFSPTSPNYSP 1652 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG------- 346 T P FSP + +FSP S A G SP +P+ +P SPG Sbjct: 1653 TSPS-FSP--TSPAFSPTSPSYSPTSPAIGGARH--LSPTSPTSPKYTPTSPGWSPTSPQ 1707 Query: 347 -YAAMSPRFGGG--LGGGPAGGAGAYAPASPAYMATSP 451 Y+ SP F G GGP + Y+P SPA+ TSP Sbjct: 1708 TYSPTSPNFAGSPTSPGGPT--SPGYSPTSPAFSPTSP 1743 [62][TOP] >UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299 RepID=C1EA31_9CHLO Length = 1720 Score = 70.1 bits (170), Expect = 8e-11 Identities = 55/162 (33%), Positives = 73/162 (45%), Gaps = 12/162 (7%) Frame = +2 Query: 56 RGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTP--GGTAFSPAYTGPG---------G 202 RG TPGREG AM+P++ SP +P FSP T G G Sbjct: 1477 RGITPGREG----------AMSPSFLLSPTAHMSPFDDSMRFSPQGTDYGSHAGGGQSPG 1526 Query: 203 FSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 +SP + A + SP S A T +P +P SP SP Y+ SP + Sbjct: 1527 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--- 1583 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + AY+P SPAY TSP YSP++PA + +SP Y Sbjct: 1584 -----SPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPAY 1618 Score = 61.6 bits (148), Expect = 3e-08 Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 3/171 (1%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAF 175 D + A +SP + Y+P A+ +PT AYSP A +P A+ Sbjct: 1514 DYGSHAGGGQSPGYSPTSPAYSPTSPAYSPTSPAY----SPTSPAYSPTSPAYSPTSPAY 1569 Query: 176 SPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352 SP T P +SP + A + SP S A T +P +P SP SP Y+ Sbjct: 1570 SP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1626 Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + + + AY+P SPAY TSP YSP++PA + +SP Y Sbjct: 1627 PTSPAY--------SPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPQY 1667 [63][TOP] >UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JY44_UNCRE Length = 1747 Score = 70.1 bits (170), Expect = 8e-11 Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 11/179 (6%) Frame = +2 Query: 2 DAAASARIARSP-------AMPESERGYTP-GREGQRTPGRAFDAAMTPTYA-YSPARAR 154 D AA+ + SP + P+ + ++P G+ G TP F P + +SPA AR Sbjct: 1454 DGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPA-GFTEYQPPGFGGFSPAGAR 1512 Query: 155 TPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334 +PGG +SP SP N + + +PG SP+ + SP Sbjct: 1513 SPGG-GYSPT-------SPFNTSPT-------------------SPGYSPSSGY----SP 1541 Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG--YSPSTPALAVSSPGY 505 SPG SPRF G PA + ++AP SPAY TSPG G SP++P+ + +SPG+ Sbjct: 1542 TSPGMGITSPRFMTSPGFSPA--SPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGF 1598 Score = 57.4 bits (137), Expect = 5e-07 Identities = 51/165 (30%), Positives = 70/165 (42%), Gaps = 10/165 (6%) Frame = +2 Query: 14 SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187 S R SP + + P + A +PT +YSP +PG + SP+Y Sbjct: 1550 SPRFMTSPGFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1606 Query: 188 -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 T P FSP A+ +FSP S A G SP +P+ +P SPG++ SP Sbjct: 1607 PTSPS-FSP--ASPAFSPTSPSYSPTSPALGGVTGRHLSPTSPTSPKYTPTSPGWSPTSP 1663 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMA--TSPGM-----GYSPSTP 478 AY+P SP + TSPG GYSP++P Sbjct: 1664 --------------DAYSPTSPNFAGSPTSPGWSLLPPGYSPTSP 1694 [64][TOP] >UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR Length = 1706 Score = 69.7 bits (169), Expect = 1e-10 Identities = 56/148 (37%), Positives = 68/148 (45%), Gaps = 3/148 (2%) Frame = +2 Query: 71 GREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMS- 247 G G G A A TP +A SP G A SP G FSP ASFSP S Sbjct: 1440 GMAGVGGVGGATPYATTP-FAASPM---VGDGAAASPFVDGGAAFSPAVGAASFSPAYSP 1495 Query: 248 -SADAAGRATPGRMTPGRSPA-GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 421 S G G SPA +P+ SP SP Y+ SP + + + AY+P Sbjct: 1496 DSGSYGSGFASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAY--------SPTSPAYSP 1547 Query: 422 ASPAYMATSPGMGYSPSTPALAVSSPGY 505 SPAY TSP YSP++PA + +SP Y Sbjct: 1548 TSPAYSPTSP--AYSPTSPAYSPTSPAY 1573 Score = 63.9 bits (154), Expect = 6e-09 Identities = 55/164 (33%), Positives = 75/164 (45%), Gaps = 6/164 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPAR-ARTPGGTAFSPAYTGP 196 SPA + Y+P A+ A +PT AYSP A +P A+SP T P Sbjct: 1542 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP--TSP 1599 Query: 197 GGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 +SP + A + SP S A T +P +P SP SP Y+ SP + Sbjct: 1600 A-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY- 1657 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + AY+P SPAY TSP YSP++PA + +SP Y Sbjct: 1658 -------SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1692 Score = 63.5 bits (153), Expect = 7e-09 Identities = 59/175 (33%), Positives = 79/175 (45%), Gaps = 8/175 (4%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPAR-ARTPGGT 169 A+ S SPA + Y+P A+ A +PT AYSP A +P Sbjct: 1505 ASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1564 Query: 170 AFSPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG 346 A+SP T P +SP + A + SP S A T +P +P SP SP Sbjct: 1565 AYSP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1621 Query: 347 YAAMSPRFGGGLGGGPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+ SP + PA + AY+P SPAY TSP YSP++PA + +SP Y Sbjct: 1622 YSPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1671 Score = 61.2 bits (147), Expect = 4e-08 Identities = 58/178 (32%), Positives = 78/178 (43%), Gaps = 12/178 (6%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQR-----TPGRAFDAAMTPTY-----AYSPAR-AR 154 AAS A SP G+ G G +P + +P Y AYSP A Sbjct: 1486 AASFSPAYSPDSGSYGSGFASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAY 1545 Query: 155 TPGGTAFSPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 +P A+SP T P +SP + A + SP S A T +P +P S Sbjct: 1546 SPTSPAYSP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1602 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SP Y+ SP + + + AY+P SPAY TSP YSP++PA + +SP Y Sbjct: 1603 PTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1650 [65][TOP] >UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK89_PHYPA Length = 1646 Score = 69.7 bits (169), Expect = 1e-10 Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Frame = +2 Query: 35 PAMPESERGYTPGREGQ-RTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 P+ ++ G TP R TP + M+P+Y SP+ +P A Y G FSP Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHN--EGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSP 1523 Query: 212 INATASFSPIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 ++ +SP ++PG ++PG SP +P SP SPGY+ SP Sbjct: 1524 --SSPGYSP----------SSPGYSPLSPGYSPT---SPGYSPTSPGYSPTSP------- 1561 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G + + +Y+P SP Y TSPG YSP++P+ + +SP Y Sbjct: 1562 -GYSPTSPSYSPTSPGYSPTSPG--YSPTSPSYSPTSPSY 1598 [66][TOP] >UniRef100_B8M2Y2 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8M2Y2_TALSN Length = 1755 Score = 69.7 bits (169), Expect = 1e-10 Identities = 60/176 (34%), Positives = 83/176 (47%), Gaps = 8/176 (4%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGY--TPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTA 172 D AA+ SP M E GY TP + + +P R + + +Y P++ G Sbjct: 1502 DGAATQYDNNSPMM---ENGYIGTPDPDAKFSPIRQAGSETPAGFTSYQPSQ----GLGG 1554 Query: 173 FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352 FSPA PGG+SP SP +S ++PG SP+ + SPASPG + Sbjct: 1555 FSPAPQSPGGYSPT------SPFNTSP----------VSPGYSPSSSY----SPASPGMS 1594 Query: 353 AMSPRFGGGLGGGPAG-----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SPRF G P+ + AY+P SP+Y SP YSP++P + SSP Y Sbjct: 1595 ITSPRFVTSPGFSPSSPNFQTTSPAYSPTSPSYQQASP--SYSPTSPRFSPSSPNY 1648 Score = 63.2 bits (152), Expect = 1e-08 Identities = 57/181 (31%), Positives = 79/181 (43%), Gaps = 23/181 (12%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 SPA P+S GY+P +P +P+ +YSPA +PG + SP + GFSP Sbjct: 1556 SPA-PQSPGGYSPTSPFNTSP---VSPGYSPSSSYSPA---SPGMSITSPRFVTSPGFSP 1608 Query: 212 IN--------ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-------PASPG 346 + A + SP A + T R +P +P MS P SP Sbjct: 1609 SSPNFQTTSPAYSPTSPSYQQASPSYSPTSPRFSPSSPNYSPSSPNMSLSSPAFSPTSPT 1668 Query: 347 YAAMSPRFGGGLGGGPAGGAGAYAPASPA--------YMATSPGMGYSPSTPALAVSSPG 502 Y+ SP GG + + Y+PASPA Y TSP + SP++PA +SP Sbjct: 1669 YSPTSPAI-GGTRQFSSPTSPKYSPASPAWSPTSPEIYSPTSPNIHGSPTSPARGGTSPS 1727 Query: 503 Y 505 Y Sbjct: 1728 Y 1728 [67][TOP] >UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D5670C Length = 2007 Score = 69.3 bits (168), Expect = 1e-10 Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 5/172 (2%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSP 181 +AA+ ++ AM +G TP +P + MTP A+SP+ A G SP Sbjct: 1500 SAATPSMSPGAAMTPWNQGATPYVGSAWSPHNLMGSGMTPGGPAFSPSAASDASG--MSP 1557 Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGY 349 Y G +SP + + SP M+S P +P SP+ +P M+P SPGY Sbjct: 1558 GY---GAWSPTPQSPAMSPFMAS--------PHGQSPSYSPSSPSFQPTSPSMTPVSPGY 1606 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP G + + Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1607 SPTSP--------GYSPTSPNYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1648 Score = 65.9 bits (159), Expect = 1e-09 Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAA-MTPTY-AYSPARARTPGGTAFSPAYTGPGGFSPINATASF 232 G TPG +P A DA+ M+P Y A+SP TP A SP P G SP + +S Sbjct: 1536 GMTPGGPAF-SPSAASDASGMSPGYGAWSP----TPQSPAMSPFMASPHGQSPSYSPSSP 1590 Query: 233 SPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406 S ++ + +PG +PG SP +P SP SP Y+ SP + + + Sbjct: 1591 S-FQPTSPSMTPVSPGYSPTSPGYSPT---SPNYSPTSPSYSPTSPSY--------SPTS 1638 Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1639 PSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1669 Score = 58.2 bits (139), Expect = 3e-07 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 13/173 (7%) Frame = +2 Query: 26 ARSPAMPESERGYTPG--------REGQRTPGRAFDAAMTPTYAYSPA--RARTPGGTAF 175 A SP+ G +PG + +P A +P+Y+ S + +P T Sbjct: 1543 AFSPSAASDASGMSPGYGAWSPTPQSPAMSPFMASPHGQSPSYSPSSPSFQPTSPSMTPV 1602 Query: 176 SPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG 346 SP Y T PG +SP + S SP S + T +P +P SP SP Sbjct: 1603 SPGYSPTSPG-YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1661 Query: 347 YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1662 YSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1704 Score = 57.4 bits (137), Expect = 5e-07 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 7/166 (4%) Frame = +2 Query: 29 RSPAMPE---SERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--T 190 +SPAM S G +P + +MTP YSP +PG + SP Y T Sbjct: 1567 QSPAMSPFMASPHGQSPSYSPSSPSFQPTSPSMTPVSPGYSPT---SPGYSPTSPNYSPT 1623 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1624 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1682 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1683 YSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1725 Score = 55.1 bits (131), Expect = 3e-06 Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 20/178 (11%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ + Y+P ++ +P+Y+ YSP+ R TP ++SP Sbjct: 1701 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPSSPRYTPASPSYSPTSPS 1759 Query: 194 PGGFSP--INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 SP A+ SFSP S+ +P S AG +P+ SP SP Y+ SP Sbjct: 1760 YSPSSPQYSPASPSFSP---SSPKYSPTSPSYSPTSPSFAGG-SPQYSPTSPSYSPTSPN 1815 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPSTPALAVSSPGY 505 + + Y+P+SP Y +SP YSP++P +SP Y Sbjct: 1816 YSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSPHSTKYSPTSPTYTPTSPSY 1873 [68][TOP] >UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max RepID=Q99368_SOYBN Length = 977 Score = 69.3 bits (168), Expect = 1e-10 Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 2/151 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238 G TP EG M+P+Y SP +P A Y G FSP +++ +SP Sbjct: 684 GATPYHEG---------TMMSPSYLLSPNLRLSPSSDAQFSPYVGGMAFSP-SSSPGYSP 733 Query: 239 IMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412 ++PG +PG SP +P SP SPGY+ SP + G + + A Sbjct: 734 ----------SSPGYSPSSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGYSPTSPA 779 Query: 413 YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP+Y TSP YSP++PA + +SP Y Sbjct: 780 YSPTSPSYSPTSP--AYSPTSPAYSSTSPAY 808 Score = 62.4 bits (150), Expect = 2e-08 Identities = 55/180 (30%), Positives = 77/180 (42%), Gaps = 22/180 (12%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG-- 199 SP S GY+P G + +PTY+ S +PG + SPAY T P Sbjct: 735 SPGYSPSSPGYSPTSPGYSPTSPGYSPT-SPTYSPS-----SPGYSPTSPAYSPTSPSYS 788 Query: 200 ----GFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 +SP + A +S SP S + T +P +P SP SP Y+ SP Sbjct: 789 PTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSP 848 Query: 365 RFGGGLGGGPAGG--AGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSPGY 505 + PA + +Y+P SP+Y TSP + YSPS+P L+ +SP Y Sbjct: 849 SYSPT---SPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNY 905 [69][TOP] >UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MI48_9CHLO Length = 1694 Score = 69.3 bits (168), Expect = 1e-10 Identities = 48/129 (37%), Positives = 64/129 (49%), Gaps = 6/129 (4%) Frame = +2 Query: 137 SPARARTPGGT-AFSPAY--TGPGGFSPINATASFSPIMSSADAAGRATP---GRMTPGR 298 +PAR TPGG + SP++ + SP + T FSP G +PG Sbjct: 1476 TPARGTTPGGVGSASPSFLLSPQAHASPFDDTMRFSPYTEGGGGGGGGDGMGFSPTSPGY 1535 Query: 299 SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 478 SP +P SP SP Y+ SP + PA + AY+P SPAY TSP YSP++P Sbjct: 1536 SPT---SPAYSPTSPAYSPTSPAYSPT---SPAPTSPAYSPTSPAYSPTSP--AYSPTSP 1587 Query: 479 ALAVSSPGY 505 A + +SP Y Sbjct: 1588 AYSPTSPAY 1596 Score = 59.7 bits (143), Expect = 1e-07 Identities = 51/151 (33%), Positives = 68/151 (45%), Gaps = 2/151 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAYTGPGGFSPIN-ATASF 232 G++P G A+ +PT AYSP +P + SPA T P +SP + A + Sbjct: 1527 GFSPTSPGYSPTSPAY----SPTSPAYSPT---SPAYSPTSPAPTSPA-YSPTSPAYSPT 1578 Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412 SP S A T +P +P SP SP Y+ SP A Sbjct: 1579 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP---------------A 1623 Query: 413 YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SPAY TSP YSP++PA + +SP Y Sbjct: 1624 YSPTSPAYSPTSP--AYSPTSPAYSPTSPQY 1652 [70][TOP] >UniRef100_B6QAY2 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QAY2_PENMQ Length = 1744 Score = 68.9 bits (167), Expect = 2e-10 Identities = 59/180 (32%), Positives = 78/180 (43%), Gaps = 12/180 (6%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGY--TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGG--- 166 D AA+ SP M E GY TP + + +P R A A TPGG Sbjct: 1502 DGAATQYDNNSPMM---ENGYIGTPDPDAKFSPIRQ-------------AGAETPGGFTA 1545 Query: 167 -------TAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPR 325 FSPA PGG+SP SP +S + G + +P +PR Sbjct: 1546 YQPSGGLGGFSPAPQSPGGYSPT------SPFNTSPVSPGYSPSSSYSPSSPNMSVTSPR 1599 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SPG++ SP F A + AY+P SP++ ATSP YSP++P + SSP Y Sbjct: 1600 FMSTSPGFSPQSPAF--------AITSPAYSPTSPSFQATSP--SYSPTSPRFSPSSPNY 1649 Score = 60.5 bits (145), Expect = 6e-08 Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 28/186 (15%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SPA P+S GY+P +P +P+ +YSP+ +P + SP + T PG F Sbjct: 1556 SPA-PQSPGGYSPTSPFNTSP---VSPGYSPSSSYSPS---SPNMSVTSPRFMSTSPG-F 1607 Query: 206 SPIN-ATASFSPIMSSADAAGRATP-----------------GRMTPGRSPAGRFTPRMS 331 SP + A A SP S + +AT +P SPA +P S Sbjct: 1608 SPQSPAFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPNYSPSSPNFSPA---SPAFS 1664 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY--------MATSPGMGYSPSTPALA 487 P+SP Y+ SP GG + + Y+PASP + TSP + SP++PA Sbjct: 1665 PSSPTYSPTSPAIGGRQFSPSSPSSPKYSPASPGWSPTSPEIYSPTSPNIHGSPTSPARG 1724 Query: 488 VSSPGY 505 +SP Y Sbjct: 1725 ATSPSY 1730 [71][TOP] >UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SXC0_RICCO Length = 1855 Score = 68.6 bits (166), Expect = 2e-10 Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 9/157 (5%) Frame = +2 Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220 Y G + TP R+ D M+P+Y SP+ +P A Y FSP Sbjct: 1481 YMDGLDFGMTPARSPVSVTPYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPFSP-TL 1539 Query: 221 TASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394 + +SP S+ ++PG +PG SP +P SP SPGY+ SP + G Sbjct: 1540 SPGYSP---SSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGY 1592 Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + AY+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1593 SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1627 Score = 57.0 bits (136), Expect = 7e-07 Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 12/170 (7%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190 SP+ + Y+P +P + +P Y AYSP +P + SP+Y T Sbjct: 1624 SPSYSPTSPSYSPTSPSY-SPTSPVYSPTSPAYSPTSPAYSPT---SPSYSPTSPSYSPT 1679 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S A T +P +P SP SP Y S + Sbjct: 1680 SPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAK 1738 Query: 368 FGGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + L P+ + Y+P SP Y TSP YSP++P+ + SSP Y Sbjct: 1739 YSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 1786 Score = 57.0 bits (136), Expect = 7e-07 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 16/171 (9%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y AYSP +PG + SP+Y T Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 1721 Query: 191 GPGGFSPINAT-----ASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASP 343 P +SP + + A +SP ++ + ++ R +P +P SP +P SP SP Sbjct: 1722 SPS-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPT---SPSYSPTSP 1777 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 Y+ SP + G Y+P+SP Y SP GYSPS P + SS Sbjct: 1778 SYSPSSPTYSPSSPYNSGVGPD-YSPSSPQY---SPSAGYSPSAPGYSPSS 1824 Score = 56.2 bits (134), Expect = 1e-06 Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 22/178 (12%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPAR-ARTPGGTAFSPAYTG 193 SP S GY+P ++ +P+Y+ YSP + +P ++SP Sbjct: 1582 SPTYSPSSPGYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640 Query: 194 PGGFSPINATAS-----FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 SP+ + S SP S + T +P +P SP SP Y+ Sbjct: 1641 YSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700 Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSP 499 SP + G + + +Y+P SP+Y TSP + YSPS+P L+ SSP Sbjct: 1701 SPAYSP-TSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSP 1757 [72][TOP] >UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624 RepID=Q0D054_ASPTN Length = 1742 Score = 68.6 bits (166), Expect = 2e-10 Identities = 59/175 (33%), Positives = 81/175 (46%), Gaps = 9/175 (5%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181 D AA+ SP M ES TP + +P R A + A GG FSP Sbjct: 1502 DGAATQYDTGSP-MQESAYIGTPDPDSNFSPIRQAGAESPGGFTEYQPTAGFGGG--FSP 1558 Query: 182 AYTGPGGFSPIN------ATASFSPIMS---SADAAGRATPGRMTPGRSPAGRFTPRMSP 334 A T P G+SP + + S+SP S ++ G +P +PG SPA +P P Sbjct: 1559 APTSPLGYSPGSPFSGGATSPSYSPSSSYSPTSPGMGITSPRMTSPGFSPA---SPAFGP 1615 Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 SP Y+ SP +G P +Y+P SP + TSP YSP++P L+ +SP Sbjct: 1616 TSPAYSPTSPAYGQASPTSP-----SYSPTSPGFSPTSP--NYSPTSPNLSPASP 1663 Score = 68.2 bits (165), Expect = 3e-10 Identities = 60/167 (35%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 SPA P S GY+PG G A + +P+ +YSP +PG SP T PG FSP Sbjct: 1557 SPA-PTSPLGYSPGSPFS---GGATSPSYSPSSSYSPT---SPGMGITSPRMTSPG-FSP 1608 Query: 212 IN-ATASFSPIMS-SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 + A SP S ++ A G+A+P +P SP +P SP SP Y+ SP Sbjct: 1609 ASPAFGPTSPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPNLS---- 1659 Query: 386 GGPAGGAGAYAPASPAYMATSPGMG-------YSPSTPALAVSSPGY 505 PA + ++P SP+Y TSP +G SP++P +SPG+ Sbjct: 1660 --PA--SPVFSPTSPSYSPTSPALGAGRNMSPTSPTSPKYTPTSPGW 1702 [73][TOP] >UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina RepID=B2AA31_PODAN Length = 1748 Score = 68.6 bits (166), Expect = 2e-10 Identities = 53/161 (32%), Positives = 72/161 (44%), Gaps = 9/161 (5%) Frame = +2 Query: 50 SERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229 +E G PG + G +++ P YA SP R +P T SP G+SP + A Sbjct: 1534 NESGGPPGFASEYGGGGYGSSSVNP-YATSPGRPTSPFTT--SPTSPFSYGYSPTSPAAG 1590 Query: 230 FSPIMSSADAAGR--ATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--- 388 +SP DA GR ++P +P SP SP SP Y+ SP + Sbjct: 1591 YSPTSPLIDAGGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTSPSYSPASPAATR 1650 Query: 389 --GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P A +P SP+Y TSP YSP++PA +SP Y Sbjct: 1651 HYSPTSPAQFQSPTSPSYSPTSP--SYSPASPAFQATSPSY 1689 [74][TOP] >UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1H3Q4_PARBA Length = 1748 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%) Frame = +2 Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151 D AA+ + SP P+ + ++P R+ G TP F P ++ +SP A Sbjct: 1505 DGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPA-GFTEYQAPGFSGGFSPHGA 1563 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 R+PGG +SP+ SP N + + +P SP+ + S Sbjct: 1564 RSPGG-GYSPS-------SPFNTSPT-------------------SPRYSPSSGY----S 1592 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SPG + SPRF G PA + +AP SPAY TSPG SP++P+ + +SPG+ Sbjct: 1593 PTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1648 Score = 57.8 bits (138), Expect = 4e-07 Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 39/193 (20%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYT 190 P G++P G R+PG + + +P+ YSP +PG + SP + Sbjct: 1552 PGFSGGFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFM 1606 Query: 191 GPGGFSPINAT-ASFSPIMSSADAAGRATP-----GRMTPGRSPAGR-----------FT 319 GFSP + A SP S + +P +PG SP + Sbjct: 1607 SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPNYSPTSPSFSPAS 1666 Query: 320 PRMSPASPGYAAMSPRFGGGLG---GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490 P SP SP Y+ SP GG G + + Y P SP + TSP YSP++P + Sbjct: 1667 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPET-YSPTSPNFSG 1725 Query: 491 S--------SPGY 505 S SPGY Sbjct: 1726 SPTSPGGPTSPGY 1738 [75][TOP] >UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1GHL1_PARBD Length = 1746 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%) Frame = +2 Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151 D AA+ + SP P+ + ++P R+ G TP F P ++ +SP A Sbjct: 1500 DGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPA-GFTEYQAPGFSGGFSPHGA 1558 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 R+PGG +SP+ SP N + + +P SP+ + S Sbjct: 1559 RSPGG-GYSPS-------SPFNTSPT-------------------SPRYSPSSGY----S 1587 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SPG + SPRF G PA + +AP SPAY TSPG SP++P+ + +SPG+ Sbjct: 1588 PTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1643 Score = 57.8 bits (138), Expect = 4e-07 Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 39/193 (20%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYT 190 P G++P G R+PG + + +P+ YSP +PG + SP + Sbjct: 1547 PGFSGGFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFM 1601 Query: 191 GPGGFSPINAT-ASFSPIMSSADAAGRATP-----GRMTPGRSPAGRF-----------T 319 GFSP + A SP S + +P +PG SP + Sbjct: 1602 SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPAS 1661 Query: 320 PRMSPASPGYAAMSPRFGGGLG---GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490 P SP SP Y+ SP GG G + + Y P SP + TSP YSP++P + Sbjct: 1662 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPET-YSPTSPNFSG 1720 Query: 491 S--------SPGY 505 S SPGY Sbjct: 1721 SPTSPGGPTSPGY 1733 [76][TOP] >UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SE75_PARBP Length = 2106 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%) Frame = +2 Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151 D AA+ + SP P+ + ++P R+ G TP F P ++ +SP A Sbjct: 1500 DGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPA-GFTEYQAPGFSGGFSPHGA 1558 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 R+PGG +SP+ SP N + + +P SP+ + S Sbjct: 1559 RSPGG-GYSPS-------SPFNTSPT-------------------SPRYSPSSGY----S 1587 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SPG + SPRF G PA + +AP SPAY TSPG SP++P+ + +SPG+ Sbjct: 1588 PTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1643 Score = 57.8 bits (138), Expect = 4e-07 Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 39/193 (20%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYT 190 P G++P G R+PG + + +P+ YSP +PG + SP + Sbjct: 1547 PGFSGGFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFM 1601 Query: 191 GPGGFSPINAT-ASFSPIMSSADAAGRATP-----GRMTPGRSPAGRF-----------T 319 GFSP + A SP S + +P +PG SP + Sbjct: 1602 SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPAS 1661 Query: 320 PRMSPASPGYAAMSPRFGGGLG---GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490 P SP SP Y+ SP GG G + + Y P SP + TSP YSP++P + Sbjct: 1662 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPET-YSPTSPNFSG 1720 Query: 491 S--------SPGY 505 S SPGY Sbjct: 1721 SPTSPGGPTSPGY 1733 [77][TOP] >UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 9 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1E Length = 1851 Score = 67.8 bits (164), Expect = 4e-10 Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229 GY+P TPG + Y SP A +P + SPAY PGG++P + + S Sbjct: 1497 GYSPA--WSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1554 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 SP S + T +P +P SP SP Y+ SP + + + Sbjct: 1555 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1606 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1607 SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1636 Score = 63.5 bits (153), Expect = 7e-09 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGG-TAFSPAY--TGPG 199 SP P Y P +PG A + +PT AY P R+PGG T SP+Y T P Sbjct: 1508 SPGSPGPSSPYIP------SPGGAMSPSYSPTSPAYEP---RSPGGYTPQSPSYSPTSPS 1558 Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 +SP + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1559 -YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1617 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1618 -TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1657 Score = 58.5 bits (140), Expect = 2e-07 Identities = 38/105 (36%), Positives = 54/105 (51%) Frame = +2 Query: 191 GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 G GFSP + ++SP S + G ++P +PG G +P SP SP Y SP Sbjct: 1490 GRDGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPTSPAYEPRSP-- 1542 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1543 -----GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1580 Score = 54.7 bits (130), Expect = 3e-06 Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ + Y+P R TP + +P+Y+ YSP + TP ++SP+ Sbjct: 1675 SPSYSPTSPNYSPSRPNY-TPTSPSYSPTSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPE 1733 Query: 194 PGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 SP + S +SP S + T TP SP +P SP SP Y SP+ Sbjct: 1734 YTPTSPKYSPTSPKYSPT-SPKYSPTSPTYSPTTPKYSPT---SPTYSPTSPVYTPTSPK 1789 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505 + + + Y+P SP Y TSP G YSP++P + +SP Y Sbjct: 1790 YSP-TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1835 [78][TOP] >UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 8 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1C Length = 1719 Score = 67.8 bits (164), Expect = 4e-10 Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229 GY+P TPG + Y SP A +P + SPAY PGG++P + + S Sbjct: 1490 GYSPA--WSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1547 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 SP S + T +P +P SP SP Y+ SP + + + Sbjct: 1548 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1599 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1600 SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1629 Score = 58.2 bits (139), Expect = 3e-07 Identities = 40/116 (34%), Positives = 57/116 (49%) Frame = +2 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 P + FSP G+SP ++SP S + G ++P +PG G +P SP Sbjct: 1482 PDASGFSP------GYSP-----AWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPT 1526 Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP Y SP GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1527 SPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1573 Score = 53.9 bits (128), Expect = 6e-06 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178 A SP+ + Y P G TP + +P+Y+ YSP +P + S Sbjct: 1518 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1577 Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 P+Y T P +SP + + S SP S + T +P +P SP SP Y Sbjct: 1578 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1636 Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475 + SP + + + +Y+P SP+Y TSP YSP++ Sbjct: 1637 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1696 Query: 476 PALAVSSPGY 505 P+ + +SP Y Sbjct: 1697 PSYSPTSPNY 1706 [79][TOP] >UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 7 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1B Length = 1858 Score = 67.8 bits (164), Expect = 4e-10 Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229 GY+P TPG + Y SP A +P + SPAY PGG++P + + S Sbjct: 1490 GYSPA--WSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1547 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 SP S + T +P +P SP SP Y+ SP + + + Sbjct: 1548 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1599 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1600 SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1629 Score = 58.2 bits (139), Expect = 3e-07 Identities = 40/116 (34%), Positives = 57/116 (49%) Frame = +2 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 P + FSP G+SP ++SP S + G ++P +PG G +P SP Sbjct: 1482 PDASGFSP------GYSP-----AWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPT 1526 Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP Y SP GG + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1527 SPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1573 Score = 55.1 bits (131), Expect = 3e-06 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1591 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1646 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P R +P SP SP Y+ SP Sbjct: 1647 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPN 1705 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + + +Y+P SP Y TSP YSPS+P +SP Y Sbjct: 1706 Y-TPMSPNYSPTSPSYSPTSPKYTPTSP--SYSPSSPEYTPTSPKY 1748 Score = 54.3 bits (129), Expect = 4e-06 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ + Y+P ++ +P+Y+ YSP+R TP ++SP T Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1696 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + SP S + T + TP +P +P SP Y+ SP+ Sbjct: 1697 PS-YSPTSPNYTPMSPNYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK- 1754 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP+TP + +SP Y Sbjct: 1755 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1783 [80][TOP] >UniRef100_Q4QZ03 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum tuberosum RepID=Q4QZ03_SOLTU Length = 361 Score = 67.8 bits (164), Expect = 4e-10 Identities = 60/172 (34%), Positives = 81/172 (47%), Gaps = 21/172 (12%) Frame = +2 Query: 53 ERGYTPGREG-QRTPGRAFDAAMTPTYAYSPARARTP----------GGTAFSPAYTGPG 199 E G TPGR TP D M+P Y SP +P GG AFSP T Sbjct: 66 EFGMTPGRSPISGTPYH--DGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAFSP--TSSP 121 Query: 200 GFSPINATASFSPIMSSADAAGRA--TPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 367 G+SP + S S S + G + +PG +PG SP +P SP+SPGY+ SP Sbjct: 122 GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPTSPA 178 Query: 368 FG------GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++PA + +SP Y Sbjct: 179 YSPTSPSYSPTSPSYSPTSSSYSPTSPSYSPTSP--IYSPTSPAYSPTSPAY 228 Score = 55.8 bits (133), Expect = 2e-06 Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 18/176 (10%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGTAFSPAYTG 193 SP+ + Y+P +P + +P Y AYSP A +P ++SP Sbjct: 190 SPSYSPTSSSYSPTSPSY-SPTSPIYSPTSPAYSPTSPAYSPTSPAYSPTLPSYSPTLPS 248 Query: 194 PGGFSPINA--TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP- 364 SP + + S+SP S A +PG SP +P SP SP Y+ SP Sbjct: 249 YSPTSPSYSPTSPSYSPTSPSYSPTFPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPS 304 Query: 365 -----RFGGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 R+ L P + Y+P+SP+Y TSP YSP++P+ + SSP Y Sbjct: 305 YNPSARYSPSLAYSPTSPKLSPSSPYSPSSPSYSPTSPS--YSPTSPSYSPSSPTY 358 [81][TOP] >UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis RepID=C5GKA7_AJEDR Length = 1746 Score = 67.8 bits (164), Expect = 4e-10 Identities = 54/164 (32%), Positives = 74/164 (45%), Gaps = 15/164 (9%) Frame = +2 Query: 59 GYTPGREGQRTPGRAF--DAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASF 232 G G T G+ D A TP + SP R G+ + P + A F Sbjct: 1481 GVVSSNAGLMTDGKGLLGDGAATPYDSSSPLRDNMYIGSPDPDSNFSPIRQAGSETPAGF 1540 Query: 233 SPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFG 373 + S + G + G +PG SP F +PR SP+S PG + SPRF Sbjct: 1541 TEYQPSGFSGGFSPHGARSPGGGYSPTSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFM 1600 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G PA + A+AP SPAY TSPG SP++P+ + +SPG+ Sbjct: 1601 SSPGFSPA--SPAFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1642 Score = 63.9 bits (154), Expect = 6e-09 Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 21/170 (12%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205 G++P G R+PG + +P+ YSP +PG + SP + GF Sbjct: 1551 GFSP--HGARSPGGGYSPTSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 1605 Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + A A SP S + +P +P SP +P SP SP Y+ SP F Sbjct: 1606 SPASPAFAPTSPAYSPTSPGYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 1657 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505 PA + A++P SP+Y TSP +G SP++P +SPG+ Sbjct: 1658 ---PA--SPAFSPTSPSYSPTSPALGISTGRHLSPTSPTSPKYTPTSPGW 1702 Score = 60.8 bits (146), Expect = 5e-08 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 10/178 (5%) Frame = +2 Query: 2 DAAASARIARSP-------AMPESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151 D AA+ + SP P+ + ++P R+ G TP F ++ +SP A Sbjct: 1499 DGAATPYDSSSPLRDNMYIGSPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 1557 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 R+PGG +SP SP N T+ SP S + +PG SP +P S Sbjct: 1558 RSPGG-GYSPT-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 1606 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 PASP +A SP AY+P SP Y + YSP++P + +SP Y Sbjct: 1607 PASPAFAPTSP---------------AYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSY 1649 [82][TOP] >UniRef100_Q9BIT5 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila inaurata madagascariensis RepID=Q9BIT5_9ARAC Length = 563 Score = 67.4 bits (163), Expect = 5e-10 Identities = 58/182 (31%), Positives = 78/182 (42%), Gaps = 16/182 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A P + GY PG++G G + + A P + PGG + P Sbjct: 258 AAAAAAAAAGPGQ-QGPGGYGPGQQGPGQQGPSGPGSAAAAAAAGPG-PQGPGG--YGPG 313 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPG 346 GPGG+ P S S+A AA A PG+ PG + P+G + P+ PG Sbjct: 314 QQGPGGYGP-------SGPGSAAAAAAAAGPGQQGPGGYGPGQQRPSGYGPGQQGPSGPG 366 Query: 347 YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-GYSP---------STPALAVSS 496 AA + G G G GAY P+ P A + G+ GY P S A A + Sbjct: 367 SAAAAAAAGPG-----QQGPGAYGPSGPGSAAAAAGLGGYGPAQQGPSGAGSAAAAAAAG 421 Query: 497 PG 502 PG Sbjct: 422 PG 423 Score = 65.1 bits (157), Expect = 3e-09 Identities = 57/164 (34%), Positives = 73/164 (44%), Gaps = 16/164 (9%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238 GY PG++G PG A AA A P + + PGG + P GPGG+ P S P Sbjct: 205 GYGPGQQGPSGPGSAAAAA-----AAGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPS-GP 255 Query: 239 IMSSADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMS------PRFGGGLGGGPA 397 ++A AA A PG+ PG G+ P + P+ PG AA + P+ GG G G Sbjct: 256 GSAAAAAAAAAGPGQQGPGGYGPGQQGPGQQGPSGPGSAAAAAAAGPGPQGPGGYGPGQQ 315 Query: 398 GGAGAYAPASP-----AYMATSPGM----GYSPSTPALAVSSPG 502 G G Y P+ P A A PG GY P + PG Sbjct: 316 -GPGGYGPSGPGSAAAAAAAAGPGQQGPGGYGPGQQRPSGYGPG 358 Score = 60.8 bits (146), Expect = 5e-08 Identities = 56/170 (32%), Positives = 72/170 (42%), Gaps = 22/170 (12%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238 GY PG++G PG A AA A + + + PGG + P GPGG+ P S Sbjct: 86 GYGPGQQGPSGPGSAASAA-----AAAGSGQQGPGG--YGPGQQGPGGYGPGQQGPSGPG 138 Query: 239 IMSSADAA--GRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFGG----GLGG--- 388 ++A AA G+ PG PG+ G + P + P+ PG AA + G G GG Sbjct: 139 SAAAAAAAGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAGPGQQGPGGYGP 198 Query: 389 ---GPAG-GAGAYAPASP----AYMATSPGM----GYSPSTPALAVSSPG 502 GP G G G P+ P A A PG GY P PG Sbjct: 199 GQQGPGGYGPGQQGPSGPGSAAAAAAAGPGQQGPGGYGPGQQGPGGYGPG 248 Score = 60.1 bits (144), Expect = 8e-08 Identities = 49/152 (32%), Positives = 65/152 (42%), Gaps = 4/152 (2%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238 GY PG++G PG A AA A P + + PGG + P GPGG+ P S Sbjct: 126 GYGPGQQGPSGPGSAAAAA-----AAGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPSGPG 177 Query: 239 IMSSADAA---GRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFGGGLGGGPAGGA 406 ++A AA G+ PG PG+ G + P + P+ PG AA + G G G G Sbjct: 178 SAAAAAAAAGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAGPGQQGPGGYGP 237 Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 G P P S + A A + PG Sbjct: 238 GQQGPGGYGPGQQGPSGPGSAAAAAAAAAGPG 269 Score = 56.2 bits (134), Expect = 1e-06 Identities = 56/181 (30%), Positives = 71/181 (39%), Gaps = 33/181 (18%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP-INATASFS 235 GY PG++G PG A AA A P + + PGG + P GPGG+ P + + Sbjct: 34 GYGPGQQGPSGPGSA--AAAAAAAAAGPGQ-QGPGG--YGPGPQGPGGYGPGQQGPSGYG 88 Query: 236 PIM-------SSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPGYAAMSPRFG- 373 P S+A AA A G+ PG + P G + P+ PG AA + G Sbjct: 89 PGQQGPSGPGSAASAAAAAGSGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAGP 148 Query: 374 -----GGLGGGPAG----GAGAYAPASP-----AYMATSPGM----GYSPSTPALAVSSP 499 GG G G G G G P+ P A A PG GY P P Sbjct: 149 GQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAGPGQQGPGGYGPGQQGPGGYGP 208 Query: 500 G 502 G Sbjct: 209 G 209 Score = 55.5 bits (132), Expect = 2e-06 Identities = 56/175 (32%), Positives = 70/175 (40%), Gaps = 11/175 (6%) Frame = +2 Query: 5 AAASARIARSPAM-------PESER--GYTPGREGQRTPGRAFDAAMTPTYAYSPARART 157 +AA+A A P P +R GY PG++G PG A AA P A Sbjct: 327 SAAAAAAAAGPGQQGPGGYGPGQQRPSGYGPGQQGPSGPGSAAAAAAAGPGQQGPG-AYG 385 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 P G + A G GG+ P S + ++A AAG P G + P+ Sbjct: 386 PSGPGSAAAAAGLGGYGPAQQGPSGAGSAAAAAAAG------------PGGYGPVQQGPS 433 Query: 338 SPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496 PG AA G G GPA G Y P S A A + G GY P A A +S Sbjct: 434 GPGSAA------GPGGYGPAQQGPARYGPGSAAAAAAAAGSAGYGPGPQASAAAS 482 [83][TOP] >UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PJA3_IXOSC Length = 1937 Score = 67.4 bits (163), Expect = 5e-10 Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 5/161 (3%) Frame = +2 Query: 38 AMPESERGYTPGREGQRTPGRA--FDAAMTPTYAYSPARARTPGGTA---FSPAYTGPGG 202 A P G++PG TPG A +A + YSPA A G + SPA + Sbjct: 1524 ATPSYGSGWSPGLGSGMTPGAAGFSPSAASDASGYSPASAGLSPGWSPQPGSPASSPASP 1583 Query: 203 FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 + P + ++SP S+ A ++P MTP +P SP SP Y+ SP + Sbjct: 1584 YIPSPVSPNYSP---SSPAYAPSSPS-MTPASPTYSPTSPSYSPTSPSYSPTSPNY---- 1635 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1636 ----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670 Score = 57.8 bits (138), Expect = 4e-07 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 4/164 (2%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196 A SPA P +P +MTP YSP +P + SP+Y T P Sbjct: 1577 ASSPASPYIPSPVSPNYSPSSPAYAPSSPSMTPASPTYSPT---SPSYSPTSPSYSPTSP 1633 Query: 197 GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 +SP + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1634 N-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1691 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + SSP Y Sbjct: 1692 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPSSPNY 1726 Score = 56.6 bits (135), Expect = 9e-07 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ Y+PA +P + SP+Y T Sbjct: 1688 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPSSPNYTPA---SPSYSPTSPSYSPT 1743 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + +PG +P+ SP SP Y+ SP Sbjct: 1744 SPS-YSPTSPSYSPTSPSYSPSSPNYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSPS 1802 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + G+ Y P+SP Y TSP YSP++P+ + SSP Y Sbjct: 1803 Y--------SPGSPQYTPSSPKYSPTSP--TYSPTSPSYSPSSPKY 1838 Score = 56.6 bits (135), Expect = 9e-07 Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 14/172 (8%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP Y+PG +P + +P+Y+ YSP + TP +SP T Sbjct: 1765 SPNYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPGSPQYTPSSPKYSP--TS 1821 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + S SP S T TP +P+ SP SP Y+ SP++ Sbjct: 1822 PT-YSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKY 1880 Query: 371 G------GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505 + + Y+P SP Y TSP G YSP++P + SSP Y Sbjct: 1881 SPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSSYSPTSPGYSPSSPTY 1932 Score = 55.1 bits (131), Expect = 3e-06 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 4/160 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 SP+ + Y+PG Q TP + +PTY+ + + + +P +SP T P +SP Sbjct: 1793 SPSYSPTSPSYSPGSP-QYTPSSPKYSPTSPTYSPT-SPSYSPSSPKYSP--TSPK-YSP 1847 Query: 212 INATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388 + T + SP S T + +P +P+ SP SP Y+ SP++ Sbjct: 1848 TSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKY------ 1901 Query: 389 GPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSP 499 + + Y+P SP +Y TSPG YSPS+P + +SP Sbjct: 1902 --SPTSPTYSPTSPKGSSYSPTSPG--YSPSSPTYSPTSP 1937 [84][TOP] >UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CBQ3_YARLI Length = 1750 Score = 67.4 bits (163), Expect = 5e-10 Identities = 45/137 (32%), Positives = 66/137 (48%) Frame = +2 Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274 G +A TPT +S A +PG A SP+Y+ SP + SP S + A AT Sbjct: 1531 GDGSGSAYTPTSPFSSFGAASPGFAATSPSYSPS---SPGMGLGAASPSFSPSSPAFAAT 1587 Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454 +P +P SP SP Y+ SP + + + +Y+P SP+Y TSP Sbjct: 1588 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSP- 1638 Query: 455 MGYSPSTPALAVSSPGY 505 YSP++P+ + +SP Y Sbjct: 1639 -SYSPTSPSYSPTSPSY 1654 Score = 64.3 bits (155), Expect = 4e-09 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 8/175 (4%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGT 169 AA+ + SPA + Y+P ++ +P+Y+ YSP +P + Sbjct: 1572 AASPSFSPSSPAFAATSPSYSPSSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYS 1627 Query: 170 AFSPAY--TGPGGFSPINATASFSPIMSSADAAGRA-TPGRMTPGRSPAGRFTPRMSPAS 340 SP+Y T P +SP + S+SP S + +P +P +P SP S Sbjct: 1628 PTSPSYSPTSPS-YSP--TSPSYSPTSPSYSPTSPSYSPTSYSPTSPSYSPTSPSYSPTS 1684 Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P Y+ SP + AG + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1685 PSYSPTSPSYSPSSPKFNAGASTSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1737 Score = 62.4 bits (150), Expect = 2e-08 Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 3/163 (1%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART-PGGTAFSPAY--TGP 196 A SP + Y+P +PG AA SPA A T P + SP+Y T P Sbjct: 1549 AASPGFAATSPSYSPS-----SPGMGLGAASPSFSPSSPAFAATSPSYSPSSPSYSPTSP 1603 Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 +SP + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1604 S-YSP--TSPSYSPTSPSYSPTSPSY-SPTSPSYSPT---SPSYSPTSPSYSPTSPSYSP 1656 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P+ +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1657 T---SPSYSPTSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1694 Score = 59.7 bits (143), Expect = 1e-07 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 12/175 (6%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFD------AAMTPTYA-----YSPAR-A 151 ++ A A SP+ S Y+P ++ + +P+Y+ YSP + Sbjct: 1580 SSPAFAATSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1639 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 +P ++SP SP + S+SP S +P SP +P S Sbjct: 1640 YSPTSPSYSPTSPSYSPTSPSYSPTSYSPTSPSYSPT--------SPSYSPT---SPSYS 1688 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 P SP Y+ SP+F G + + +Y+P SP+Y TSP YSP++P+ + S Sbjct: 1689 PTSPSYSPSSPKFNAGASTSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPGS 1741 [85][TOP] >UniRef100_Q99366 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max RepID=Q99366_SOYBN Length = 625 Score = 67.0 bits (162), Expect = 7e-10 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Frame = +2 Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220 Y G + TP R+ + M+P+Y SP +P A Y G FSP + Sbjct: 308 YMDGLDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAFSP-TS 366 Query: 221 TASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394 + +SP ++PG +PG SP +P SP SPGY+ SP + G Sbjct: 367 SPGYSP----------SSPGYSPSSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGY 412 Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + AY+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 413 SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 447 Score = 58.2 bits (139), Expect = 3e-07 Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 11/169 (6%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193 SP+ + Y+P A+ A +PT AYSP +P + SP+Y T Sbjct: 437 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT---SPSYSPTSPSYSPTS 493 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + S SP S A T +P +P SP SP Y S ++ Sbjct: 494 PS-YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKY 552 Query: 371 GGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 L P+ + Y+P SP Y TSP YSP++P+ + SSP Y Sbjct: 553 SPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 599 Score = 57.4 bits (137), Expect = 5e-07 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 19/175 (10%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP S GY+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 402 SPTYSPSSPGYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 457 Query: 191 GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + A + SP S + T +P +P SP SP Y+ SP Sbjct: 458 SPA-YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 516 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSP 499 + G + + +Y+P SP+Y TSP + YSPS+P L+ SSP Sbjct: 517 YSP-TSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSP 570 [86][TOP] >UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8IRZ2_CHLRE Length = 1789 Score = 67.0 bits (162), Expect = 7e-10 Identities = 56/157 (35%), Positives = 73/157 (46%), Gaps = 10/157 (6%) Frame = +2 Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA---SFS 235 TP R RTPG M+P++ SP + G + FSP + PG FSP + S Sbjct: 1496 TPSRSPARTPG-----PMSPSHLLSPMHSPFVG-SGFSPMH--PGAFSPAHGGGVGGPMS 1547 Query: 236 PIMSSADAAGRATPGRMTPGR------SPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGP 394 P S T R +P SPA T P SP SP Y+ SP + Sbjct: 1548 PGYSPTSPGYSPTSPRYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-------- 1599 Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + AY+P SPAY TSP YSP++PA + +SP Y Sbjct: 1600 SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1634 Score = 63.2 bits (152), Expect = 1e-08 Identities = 42/95 (44%), Positives = 50/95 (52%), Gaps = 17/95 (17%) Frame = +2 Query: 272 TPGRMTPGRSPA---GRFTPR--------------MSPASPGYAAMSPRFGGGLGGGPAG 400 TPGRMTP RSPA G +P SP PG A SP GGG+GG + Sbjct: 1491 TPGRMTPSRSPARTPGPMSPSHLLSPMHSPFVGSGFSPMHPG--AFSPAHGGGVGGPMSP 1548 Query: 401 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G Y+P SP Y TSP YSP++PA + +SP Y Sbjct: 1549 G---YSPTSPGYSPTSP--RYSPTSPAYSPTSPAY 1578 Score = 60.8 bits (146), Expect = 5e-08 Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 18/167 (10%) Frame = +2 Query: 59 GYTPGREGQRTP--GRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTGPGGFSPI 214 G++P G +P G M+P Y+ YSP R +P A+SP T P +SP Sbjct: 1525 GFSPMHPGAFSPAHGGGVGGPMSPGYSPTSPGYSPTSPRYSPTSPAYSP--TSPA-YSPT 1581 Query: 215 N-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 391 + A + SP S A T +P +P SP SP Y+ SP + Sbjct: 1582 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY------- 1634 Query: 392 PAGGAGAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGY 505 + + AY+P SPAY TSP YSP++P+++ +SP Y Sbjct: 1635 -SPTSPAYSPTSPAYSPTSPAYSPAYSPTSPQYSPTSPSMSPTSPRY 1680 [87][TOP] >UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR Length = 1748 Score = 67.0 bits (162), Expect = 7e-10 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 12/166 (7%) Frame = +2 Query: 44 PESERGYTPGRE-GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220 P+ E ++P R+ G +PG + T + G FSPA T P G+SP + Sbjct: 1522 PDPESNFSPIRQAGAESPGGFTEYQPTGGF-----------GGGFSPAATSPAGYSPSSP 1570 Query: 221 TAS--FSPIMSSADAAGRATPG---------RMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 ++ SP S + + +PG +PG SPA +P +P SP Y+ SP Sbjct: 1571 FSANPTSPGYSPSSSYSPTSPGMAMTSPRFSMTSPGFSPA---SPSFAPTSPAYSPTSPA 1627 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +G P +Y+P SP + TSP YSP++P+ + +SP + Sbjct: 1628 YGQASPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1666 Score = 58.2 bits (139), Expect = 3e-07 Identities = 63/194 (32%), Positives = 81/194 (41%), Gaps = 36/194 (18%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SPA S GY+P P +P+ +YSP +PG SP + T PG F Sbjct: 1556 SPAAT-SPAGYSPSSPFSANPT---SPGYSPSSSYSPT---SPGMAMTSPRFSMTSPG-F 1607 Query: 206 SPINATASFSPIMSS----ADAAGRATP-----GRMTPGRSPAGR-----------FTPR 325 SP A+ SF+P + + A G+A+P +PG SP +P Sbjct: 1608 SP--ASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPA 1665 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG------YSPSTPALA 487 SP SP Y+ SP GG A +P SP Y TSPG YSP++P A Sbjct: 1666 FSPTSPSYSPTSPAIGGA-----ARHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFA 1720 Query: 488 VS--------SPGY 505 S SPGY Sbjct: 1721 GSPTSPGGPTSPGY 1734 [88][TOP] >UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=UPI0001985649 Length = 1848 Score = 66.6 bits (161), Expect = 9e-10 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 21/169 (12%) Frame = +2 Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP----------GGTAFSPAYT 190 Y G + TP R+ D M+P Y SP +P GG AFSP T Sbjct: 1481 YMEGLDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSP--T 1538 Query: 191 GPGGFSPINATASFSPIMSSADAAGRA--TPGRM--TPGRSPAGRFTPRMSPASPGYAAM 358 G+SP + S S S + G + +PG +PG SP +P SP+SPGY+ Sbjct: 1539 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPT 1595 Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1596 SPAY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1634 Score = 57.8 bits (138), Expect = 4e-07 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 16/171 (9%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y AYSP +PG + SP+Y T Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 1728 Query: 191 GPGGFSPIN-----ATASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASP 343 P +SP + ++A +SP ++ + ++ R +P +P SP +P SP SP Sbjct: 1729 SPS-YSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPT---SPSYSPTSP 1784 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 Y+ SP + +G + Y+P+SP Y SP GYSPS P + SS Sbjct: 1785 SYSPASPTYSP-TSPYNSGVSPDYSPSSPQY---SPSAGYSPSAPGYSPSS 1831 Score = 56.2 bits (134), Expect = 1e-06 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 12/168 (7%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SPAY T Sbjct: 1610 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPVYSPT---SPSYSPTSPAYSPT 1665 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SPGY+ SP Sbjct: 1666 SPA-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1724 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATS----PGMGYSPSTPALAVSSP 499 + + + +Y+P SP+Y +S P + YSPS+P L+ SSP Sbjct: 1725 Y--------SPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSP 1764 Score = 54.7 bits (130), Expect = 3e-06 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Frame = +2 Query: 113 AMTPTY-AYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPG 280 A +PT AYSP +P + SP+Y T P +SP + + S SP S A T Sbjct: 1661 AYSPTSPAYSPT---SPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPTSP 1716 Query: 281 RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG----AGAYAPASPAYMATS 448 +P +P SP SP Y S ++ L P+ + Y+P SP Y TS Sbjct: 1717 GYSPTSPSYSPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTS 1776 Query: 449 PGMGYSPSTPALAVSSPGY 505 P YSP++P+ + +SP Y Sbjct: 1777 PS--YSPTSPSYSPASPTY 1793 [89][TOP] >UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q5WMZ9_ORYSJ Length = 1741 Score = 66.6 bits (161), Expect = 9e-10 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 1/159 (0%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPAR-ARTPGGTAFSPAYTGPGGFS 208 SP + Y P +++ +P+Y+YSP + +P ++S + T P +S Sbjct: 1583 SPVYSPTSPVYNPTSSAYSPTSPSYNPT-SPSYSYSPTSPSYSPTSPSYSYSPTSPS-YS 1640 Query: 209 PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388 P + + ++SP S +P SP +P SP SP Y+ SP + Sbjct: 1641 PTSPSYNYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSPSY------ 1683 Query: 389 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + AY+P SPAY TSP GYSP++P+ + SSP Y Sbjct: 1684 --SPTSSAYSPTSPAYSPTSP--GYSPTSPSYSPSSPSY 1718 Score = 53.5 bits (127), Expect = 8e-06 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAMTP----TYAYSPARARTPGGTA--FSPAYTGPGGF 205 P S GY+P TPG + +P + YSPA + T+ + P Sbjct: 1496 PSSGGGYSPSPP-VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1554 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SPI + S PI S + T +P +P +P S Y+ SP + Sbjct: 1555 SPIYSATS--PIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN---- 1608 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1609 --PTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSY 1646 [90][TOP] >UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q0DKN9_ORYSJ Length = 1834 Score = 66.6 bits (161), Expect = 9e-10 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 1/159 (0%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPAR-ARTPGGTAFSPAYTGPGGFS 208 SP + Y P +++ +P+Y+YSP + +P ++S + T P +S Sbjct: 1636 SPVYSPTSPVYNPTSSAYSPTSPSYNPT-SPSYSYSPTSPSYSPTSPSYSYSPTSPS-YS 1693 Query: 209 PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388 P + + ++SP S +P SP +P SP SP Y+ SP + Sbjct: 1694 PTSPSYNYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSPSY------ 1736 Query: 389 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + AY+P SPAY TSP GYSP++P+ + SSP Y Sbjct: 1737 --SPTSSAYSPTSPAYSPTSP--GYSPTSPSYSPSSPSY 1771 Score = 53.5 bits (127), Expect = 8e-06 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAMTP----TYAYSPARARTPGGTA--FSPAYTGPGGF 205 P S GY+P TPG + +P + YSPA + T+ + P Sbjct: 1549 PSSGGGYSPSPP-VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1607 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SPI + S PI S + T +P +P +P S Y+ SP + Sbjct: 1608 SPIYSATS--PIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN---- 1661 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1662 --PTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSY 1699 [91][TOP] >UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NVN7_VITVI Length = 1010 Score = 66.6 bits (161), Expect = 9e-10 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 21/169 (12%) Frame = +2 Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP----------GGTAFSPAYT 190 Y G + TP R+ D M+P Y SP +P GG AFSP T Sbjct: 718 YMEGLDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSP--T 775 Query: 191 GPGGFSPINATASFSPIMSSADAAGRA--TPGRM--TPGRSPAGRFTPRMSPASPGYAAM 358 G+SP + S S S + G + +PG +PG SP +P SP+SPGY+ Sbjct: 776 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPT 832 Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 833 SPAY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 871 Score = 62.0 bits (149), Expect = 2e-08 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP + Y+P G A+ +P+Y+ YSP +P + SP+Y T Sbjct: 812 SPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 867 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP+ S + T +P +P SP SP Y+ SP Sbjct: 868 SPS-YSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 926 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SPAY TSPG YSP++P+ + +SP Y Sbjct: 927 YSP-TSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSPSYSPTSPSY 969 Score = 56.2 bits (134), Expect = 1e-06 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 12/168 (7%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SPAY T Sbjct: 847 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPVYSPT---SPSYSPTSPAYSPT 902 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SPGY+ SP Sbjct: 903 SPA-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 961 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATS----PGMGYSPSTPALAVSSP 499 + + + +Y+P SP+Y +S P + YSPS+P L+ SSP Sbjct: 962 Y--------SPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSP 1001 [92][TOP] >UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W4S0_PYRTR Length = 1742 Score = 66.6 bits (161), Expect = 9e-10 Identities = 53/169 (31%), Positives = 74/169 (43%), Gaps = 12/169 (7%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-------YSPARARTPGGTAFSPAYT 190 SP + GY+P G +P A A +P Y YSP R T+ S + T Sbjct: 1574 SPGFSPTSPGYSPTSPGTASPRFA---ATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPT 1630 Query: 191 GPGGFSPIN-----ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355 P G+SP + + ++SP +S G AT +P +P+ SP SP Y A Sbjct: 1631 SPAGYSPTSPQYSPTSPNYSP--TSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQA 1688 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 S R P Y+P SP Y TSP +SP++P + +SPG Sbjct: 1689 TSDRRSPTSPTSPQ-----YSPTSPRYSPTSPAGSFSPTSPRYSPTSPG 1732 Score = 60.8 bits (146), Expect = 5e-08 Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229 G++P +G R+PG + M+P + SP +PG + SP Y T PG SP A S Sbjct: 1547 GFSP-YDGGRSPGGSGFTGMSPGFT-SPV---SPGFSPTSPGYSPTSPGTASPRFAATSP 1601 Query: 230 ------FSPIMS-SADAAGRATPGRMTPGRSPAG--RFTPRMSPASPGYAAMSPRFGGGL 382 SP S ++ G T +P SPAG +P+ SP SP Y+ SP F GG Sbjct: 1602 GYMASPTSPHYSPTSPRYGSPTSPSYSP-TSPAGYSPTSPQYSPTSPNYSPTSPTFMGG- 1659 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 + AY+P SP Y TSP YSP++P +S Sbjct: 1660 -----ATSPAYSPTSPQYSPTSP--QYSPTSPQYQATS 1690 Score = 55.5 bits (132), Expect = 2e-06 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Frame = +2 Query: 152 RTPGGTAF---SPAYTGP--GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRF 316 R+PGG+ F SP +T P GFSP + S + +++ +PG M SP Sbjct: 1555 RSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRFAATSPGYMASPTSPHYSP 1614 Query: 317 T-PRM-SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490 T PR SP SP Y+ SP + + Y+P SP +M + YSP++P + Sbjct: 1615 TSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSP 1674 Query: 491 SSPGY 505 +SP Y Sbjct: 1675 TSPQY 1679 [93][TOP] >UniRef100_Q692G1 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes RepID=Q692G1_NEPCL Length = 332 Score = 66.2 bits (160), Expect = 1e-09 Identities = 57/165 (34%), Positives = 73/165 (44%), Gaps = 2/165 (1%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 +ASA A + + GY PG++G PG A AA A PGG + P Sbjct: 94 SASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAA----------AAGPGG--YGPGQ 141 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 GPGG++P S ++A AA RA PG G PA + P+ PG AA + Sbjct: 142 QGPGGYAPGQQGPSGPGSAAAAAAAARAGPG----GYGPA-----QQGPSGPGIAASAAS 192 Query: 368 FGGGLGGGPA-GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496 G G G GPA G Y P S + G GY P + A A +S Sbjct: 193 AGPG-GYGPAQQGPAGYGPGSAVAASAGAGSAGYGPGSQASAAAS 236 Score = 60.5 bits (145), Expect = 6e-08 Identities = 51/160 (31%), Positives = 66/160 (41%), Gaps = 12/160 (7%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238 GY PG++G PG A AA A A PGG + P GPGG+ P S + Sbjct: 4 GYRPGQQGPSGPGSAAAAA---------AAAAGPGG--YGPGQQGPGGYGPGQQGPSGAG 52 Query: 239 IMSSADAA------------GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 ++A AA G+ PG PG+ G + P + A+ A + GG Sbjct: 53 SAAAAAAAGPGQQGLGGYGPGQQGPGGYGPGQQGPGGYGPGSASAAAAAAGPGQQGPGGY 112 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 G G G +G AS A A PG GY P +PG Sbjct: 113 GPGQQGPSGP-GSASAAAAAAGPG-GYGPGQQGPGGYAPG 150 Score = 57.4 bits (137), Expect = 5e-07 Identities = 55/176 (31%), Positives = 73/176 (41%), Gaps = 10/176 (5%) Frame = +2 Query: 5 AAASARIARSPAM----PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARART 157 AAA+A A P + GY PG++G G A AA Y P + + Sbjct: 18 AAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQ-QG 76 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 PGG + P GPGG+ P +A+A AA A PG+ PG G + P+ Sbjct: 77 PGG--YGPGQQGPGGYGPGSASA----------AAAAAGPGQQGPGGYGPG----QQGPS 120 Query: 338 SPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 PG A+ + G G GP G G YAP G G + + A A + PG Sbjct: 121 GPGSASAAAAAAGPGGYGPGQQGPGGYAPGQQG----PSGPGSAAAAAAAARAGPG 172 [94][TOP] >UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3RM26_TRIAD Length = 1784 Score = 66.2 bits (160), Expect = 1e-09 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 22/176 (12%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAF---DAAMTPTYA---YSPARARTPGGTAFSPAYTGPGGF 205 P E YTPG G TPG A A P+++ YSP + P + SP + P Sbjct: 1504 PSYEGPYTPGMGGGMTPGAAGFSPSGASEPSFSPASYSPNWSPGPAASPGSPGPSSPYMQ 1563 Query: 206 SPINAT--ASFSPIMSSADA--------------AGRATPGRMTPGRSPAGRFTPRMSPA 337 SP + T +F I+ + ++ + T R +P +PR SP Sbjct: 1564 SPTDITFYVAFQSIILTVESKLLTDFSKYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPT 1623 Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP Y+ SPR+ + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1624 SPSYSPTSPRY--------SPTSPSYSPTSPSYSPTSP--RYSPTSPSYSPTSPSY 1669 Score = 63.2 bits (152), Expect = 1e-08 Identities = 53/170 (31%), Positives = 74/170 (43%), Gaps = 25/170 (14%) Frame = +2 Query: 71 GREGQRTPGRAFDAAMT-PTYA--YSPARA--RTPGGTAFSPAYTGPGGFSPINATASFS 235 G Q TP +D+++T P+Y Y+P TPG FSP+ FSP AS+S Sbjct: 1489 GMSPQMTP---WDSSLTTPSYEGPYTPGMGGGMTPGAAGFSPSGASEPSFSP----ASYS 1541 Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFT--------------------PRMSPASPGYAA 355 P S AA +PG +P T + SP SP Y+ Sbjct: 1542 PNWSPGPAASPGSPGPSSPYMQSPTDITFYVAFQSIILTVESKLLTDFSKYSPTSPSYSP 1601 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SPR+ + + +Y+P SP Y TSP YSP++P + +SP Y Sbjct: 1602 TSPRY--------SPTSPSYSPTSPRYSPTSP--SYSPTSPRYSPTSPSY 1641 Score = 59.3 bits (142), Expect = 1e-07 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ + Y+P + +P + +P+Y+ YSP R +P ++SP T Sbjct: 1638 SPSYSPTSPSYSP-TSPRYSPTSPSYSPTSPSYSPTSPKYSPTSPRYSPTSPSYSP--TS 1694 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + S SP S + T R +P +PR SP SP Y+ SPR Sbjct: 1695 PS-YSPTSPSYSPTSPSYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSPR- 1752 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1753 --------------YSPTSPSYSPTSP--SYSPTSPSYSPTSPDY 1781 [95][TOP] >UniRef100_UPI000051AA8E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Apis mellifera RepID=UPI000051AA8E Length = 452 Score = 65.9 bits (159), Expect = 1e-09 Identities = 54/153 (35%), Positives = 69/153 (45%), Gaps = 6/153 (3%) Frame = +2 Query: 65 TPGREGQRTPGRAFDAAMTPTY---AYSPA--RARTPGGTAFSPA-YTGPGGFSPINATA 226 TP Q TP TP Y + SPA TPGG FSP+ + G SP A + Sbjct: 48 TPSMSPQMTPWMG----ATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSP--AYS 101 Query: 227 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406 ++SP S + G P SPAG +P SP SP Y SP + Sbjct: 102 AYSPQPGSPGSPG---PSMSPYPMSPAGGASPSYSPTSPAYLPTSPSI--------TPSS 150 Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP++P+ + +SP Y Sbjct: 151 PNYSPTSPTYSPTSP--NYSPTSPSYSPTSPSY 181 Score = 57.8 bits (138), Expect = 4e-07 Identities = 52/174 (29%), Positives = 74/174 (42%), Gaps = 16/174 (9%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPG--GTAFSPAYTGP-G 199 S P G TPG G + + ++P Y AYSP + +PG G + SP P G Sbjct: 68 SSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSP-QPGSPGSPGPSMSPYPMSPAG 126 Query: 200 GFSPINATAS------------FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 G SP + S SP S T +P +P SP SP Sbjct: 127 GASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYSPTSPSYSPTSPSYSPTSP 186 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 187 SYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 230 Score = 57.0 bits (136), Expect = 7e-07 Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 16/174 (9%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ + Y+P Q +P + +P Y+ YSP +P SP YT Sbjct: 290 SPSYSPTSPSYSPSSP-QYSPASPSYSPSSPKYSPTSPSYSPT---SPSFAGTSPQYTPA 345 Query: 197 GG-FSPINAT-----ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 +SP + T S+SP A+G +P SP +P SP SP Y+ Sbjct: 346 SPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPT---SPTYSPTSPQYSPS 402 Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-----GYSPSTPALAVSSPGY 505 S ++ + + Y P SP+Y TSP GYSP++P + +SP Y Sbjct: 403 STKY--------SPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 448 Score = 55.5 bits (132), Expect = 2e-06 Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ + Y+P TP + +P+Y+ YSPA +P + SP Y Sbjct: 269 SPSYSPTSPSYSPSSPNY-TPASPSYSPTSPSYSPSSPQYSPA---SPSYSPSSPKY--- 321 Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 SP + S+SP +S AG + P +PA +P SP SP Y+ SP + Sbjct: 322 ---SP--TSPSYSP--TSPSFAGTS------PQYTPA---SPTYSPTSPTYSPTSPSYSP 365 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 A G+ Y+P+SP Y TSP YSP++P + SS Y Sbjct: 366 SSPQHTASGSTRYSPSSPNYSPTSP--TYSPTSPQYSPSSTKY 406 Score = 54.7 bits (130), Expect = 3e-06 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 185 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 240 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P +PASP Y+ SP Sbjct: 241 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPTSPS 299 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P+SP Y TSP YSP++P+ A +SP Y Sbjct: 300 YSPS-SPQYSPASPSYSPSSPKYSPTSP--SYSPTSPSFAGTSPQY 342 [96][TOP] >UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5YGY9_SORBI Length = 1857 Score = 65.9 bits (159), Expect = 1e-09 Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 32/180 (17%) Frame = +2 Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP-----------GGTAFSPAY 187 Y G + TP R+ + M+P+Y SP +P G AFSP + Sbjct: 1480 YVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSP-F 1538 Query: 188 TGPGGFSPINATAS--------------FSPIMSSADAAGRATPGRMTPGRSPAGRFTPR 325 PGG+SP + S SP S A + T TPG +P Sbjct: 1539 PSPGGYSPSSGGYSPSSPVFTPEKGYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPN 1598 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP SP Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1599 YSPTSPTYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1648 Score = 63.9 bits (154), Expect = 6e-09 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 12/170 (7%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFSPA 184 SP+ + YTPG +P + +PTY+ YSP +P + SP+ Sbjct: 1575 SPSYSPTSPSYTPGSPTY-SPTSPNYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1633 Query: 185 Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355 Y T P +SP + + S SP+ S A T +P +P SP SP Y+ Sbjct: 1634 YSPTSPS-YSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1692 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + + + +Y+P SP+Y TSP YSP++PA + +SPGY Sbjct: 1693 TSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPGY 1732 [97][TOP] >UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7Q3C6_ANOGA Length = 1878 Score = 65.9 bits (159), Expect = 1e-09 Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 6/166 (3%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP-AYTGPGG 202 A +P+M ++ TPG G G PA TPGG +FSP A + G Sbjct: 1492 AATPSMTPWQQSATPGYGGWSPSG--------------PASGMTPGGPSFSPSAQSDASG 1537 Query: 203 FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP +S+SPI S + G + M+P + +P SP+SP YA SP Sbjct: 1538 MSP----SSWSPIRGSPSSPGPS----MSPYPPSSPSMSPSYSPSSPNYAPNSP------ 1583 Query: 383 GGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505 G + +Y+P SP Y SP YSPS+P + ++ Y Sbjct: 1584 ----GGASPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSATQNY 1625 Score = 58.2 bits (139), Expect = 3e-07 Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 20/177 (11%) Frame = +2 Query: 35 PAMPESERGYTPGREGQ--RTPGRAFDAAMTPTYAYSPARAR-TPGGTAFSPA----YTG 193 P+ P Y+P +PG A + + YSP + +PG + +SP+ ++ Sbjct: 1562 PSSPSMSPSYSPSSPNYAPNSPGGASPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSA 1621 Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRM---------TPGRSPAGRF----TPRMSP 334 +SP + + S M A+ A+PG +P SP+ +P SP Sbjct: 1622 TQNYSPTSPSYSPMSPMHPTSASNFASPGYSPTSPSYSPTSPSYSPSSPVFSPTSPSYSP 1681 Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +SP Y+ SP +Y+P SP+Y TSP ++P TP+ + SSP Y Sbjct: 1682 SSPSYSPTSP---------------SYSPTSPSYSPTSP--NFTPVTPSYSPSSPNY 1721 Score = 53.5 bits (127), Expect = 8e-06 Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA----YSPARAR----TPGGTAFSPAY 187 SPA P Y+P + +P + +P+Y Y+PA + +P + SP+Y Sbjct: 1729 SPASPS----YSPSSP-KYSPTSPSYSPTSPSYIGSPHYTPASPQYGQASPNYSPTSPSY 1783 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 + SP ++ S S S ++ TP +P S +P+ SP SP Y + SP Sbjct: 1784 SPS---SPQHSPGSSSNHYSIGSSSYSQTPAPYSPNMSSYSPSSPKYSPTSPVYTSSSP- 1839 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 Y+P+SPAY T GYSPS+PA SP Sbjct: 1840 --------------TYSPSSPAYSPTP--QGYSPSSPASPTYSP 1867 [98][TOP] >UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186D846 Length = 1885 Score = 65.5 bits (158), Expect = 2e-09 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 2/156 (1%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG--GTAFSPAYTGPGGFSPIN 217 P + G TPG G + + ++P Y+ + +P G + SP PGG Sbjct: 1506 PHAGSGMTPGGPSFSPSGSSDASGLSPGYSPWSPQPGSPSSPGPSNSPYVPSPGG----- 1560 Query: 218 ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397 SP S + A T MTP S +P SP+SP Y+ SP + + Sbjct: 1561 ---GMSPSYSPSSPAFAPTSPSMTPTSSNYSPTSPSYSPSSPNYSPNSPSY--------S 1609 Query: 398 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1610 PTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1643 Score = 65.1 bits (157), Expect = 3e-09 Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 5/152 (3%) Frame = +2 Query: 65 TPGREGQRTPGRAFDAAMTPTY--AYSP--ARARTPGGTAFSPAYTGPG-GFSPINATAS 229 TP Q TP ++ TP Y A+SP TPGG +FSP+ + G SP Sbjct: 1482 TPSMSPQMTP---WNQGETPAYVSAWSPHAGSGMTPGGPSFSPSGSSDASGLSP-----G 1533 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP + P SP G +P SP+SP +A SP + Sbjct: 1534 YSPWSPQPGSPSSPGPSNSPYVPSPGGGMSPSYSPSSPAFAPTSPSM--------TPTSS 1585 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP+Y +SP YSP++P+ + +SP Y Sbjct: 1586 NYSPTSPSYSPSSP--NYSPNSPSYSPTSPSY 1615 Score = 57.8 bits (138), Expect = 4e-07 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 1/161 (0%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG 202 + SP +P G +P +MTPT + YSP +P + SP Y+ P Sbjct: 1550 SNSPYVPSPGGGMSPSYSPSSPAFAPTSPSMTPTSSNYSPT---SPSYSPSSPNYS-PNS 1605 Query: 203 FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 S + S+SP S +P SP +P SP SP Y+ SP + Sbjct: 1606 PSYSPTSPSYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSPSY---- 1650 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1651 ----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1685 Score = 54.3 bits (129), Expect = 4e-06 Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 25/183 (13%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARART-PGGTAFSPAYTGPGGF 205 SP+ + Y+P ++ +P+Y+ SP+ +RT P + SP+Y+ P Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSRTSPSYSPTSPSYS-PSSP 1718 Query: 206 SPINATASFSPIMSSADAAGRATPGR------------MTPGRSPAG--------RFTP- 322 + A+ SFSP S ++ R +P +P SP ++TP Sbjct: 1719 NYTPASPSFSPTSPSLYSSPRYSPASPSYSPGSPKYSPTSPSYSPTSPSYASVSPQYTPT 1778 Query: 323 --RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 + SP SP Y+ SP + G + Y+P SP Y TS + YSP++P + SS Sbjct: 1779 SPQYSPTSPTYSPTSPSYSPSSPSHTPGASTRYSPTSPKYSPTS--LSYSPASPQYSPSS 1836 Query: 497 PGY 505 Y Sbjct: 1837 SKY 1839 [99][TOP] >UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E658E Length = 1628 Score = 65.5 bits (158), Expect = 2e-09 Identities = 59/159 (37%), Positives = 75/159 (47%), Gaps = 13/159 (8%) Frame = +2 Query: 68 PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP------INATAS 229 PG + G F +A +P SPA TP T +PAY G +SP A Sbjct: 1489 PGISVAGSTGMFFGSAPSPMSGMSPAM--TPWNTGATPAY---GAWSPSVGSGMTPGAAG 1543 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAGGA 406 FSP +S DA+G +PG SPA TP SP SPG A+ P GG + Sbjct: 1544 FSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPASPYIPSPGGAMSPN----- 1590 Query: 407 GAYAPASPAYMATSPG------MGYSPSTPALAVSSPGY 505 Y+P SPAY SPG GYSP++P+ + +SP Y Sbjct: 1591 --YSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSPTSPSY 1627 [100][TOP] >UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=B9FZ51_ORYSJ Length = 1526 Score = 65.5 bits (158), Expect = 2e-09 Identities = 55/178 (30%), Positives = 76/178 (42%), Gaps = 30/178 (16%) Frame = +2 Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP----------GGTAFSPA-- 184 Y G + TP R+ + M+P+Y SP +P GG AFSP Sbjct: 1152 YVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAFSPVPS 1211 Query: 185 --YT--GPGGFSPINATAS-------FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 YT GG+SP + S SP S A + T TPG +P S Sbjct: 1212 PGYTPSSGGGYSPSSPVYSPGPGYSPTSPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYS 1271 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SP Y+ SP + + + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1272 PTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPVYSPTSPAY 1326 Score = 64.3 bits (155), Expect = 4e-09 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + YTPG ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1246 SPSYSPTSPSYTPGSPTYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1301 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP+ S A T +P +P SP SP Y+ SP Sbjct: 1302 SPS-YSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1360 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++PA + +SPGY Sbjct: 1361 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPGY 1396 [101][TOP] >UniRef100_A6YIY0 Major ampullate spidroin 2 n=1 Tax=Latrodectus hesperus RepID=A6YIY0_9ARAC Length = 3779 Score = 65.1 bits (157), Expect = 3e-09 Identities = 58/169 (34%), Positives = 69/169 (40%), Gaps = 4/169 (2%) Frame = +2 Query: 11 ASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT 190 + A A + A GY PG G PG A AA A + A PGG P+ Sbjct: 2934 SGAAAAAAAAAGSGPSGYGPGAAGPSGPGGAGAAA-----AAASAGGSGPGGYGQGPSGY 2988 Query: 191 GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 GP G P+ + P S A AA A G PGR + P S A+ AA P + Sbjct: 2989 GPTG--PVGQQG-YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGY 3043 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAVSSPGY 505 GG G GP GGAGA A + GY P + A A PGY Sbjct: 3044 GGQQGYGP-GGAGAAAAVAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 3091 Score = 63.5 bits (153), Expect = 7e-09 Identities = 57/171 (33%), Positives = 73/171 (42%), Gaps = 4/171 (2%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A A P+ ++GY PG G A Y P A A + A Sbjct: 2512 AAAAAAAAAGGAGPDRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAA-AAA 2570 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GP G+ P A A+ ++A AAG + PG G+ P+G P+ PG Sbjct: 2571 GPGPSGYGPGGAGAA-----AAAAAAGGSGPGGY--GQGPSG-----YGPSGPG------ 2612 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPG--MGYSP--STPALAVSSPGY 505 G G GP GG+GA A A+ A PG GY P + A A PGY Sbjct: 2613 ---GQQGNGP-GGSGAAAAAAAAAGGAGPGRQQGYGPGGAAAAAAAGGPGY 2659 Score = 62.8 bits (151), Expect = 1e-08 Identities = 56/166 (33%), Positives = 68/166 (40%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A A P ++GY PG G A AA Y + PGG A + A Sbjct: 1324 AAAAAAAAAGGAGPGRQQGYGPGSSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAA 1376 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GG P ++ P S A AA A G PGR + P S A+ AA P Sbjct: 1377 AAAAGGAGP-GTQQAYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 1433 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 +GG G GP GGAGA A A+ Y P A + G Sbjct: 1434 GYGGQQGYGP-GGAGAAAAAAAGGAGAGRQQAYGPGGSGAAAAGSG 1478 Score = 62.8 bits (151), Expect = 1e-08 Identities = 56/166 (33%), Positives = 68/166 (40%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A A P ++GY PG G A AA Y + PGG A + A Sbjct: 2102 AAAAAAAAAGGAGPGRQQGYGPGSSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAA 2154 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GG P ++ P S A AA A G PGR + P S A+ AA P Sbjct: 2155 AAAAGGAGP-GTQQAYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 2211 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 +GG G GP GGAGA A A+ Y P A + G Sbjct: 2212 GYGGQQGYGP-GGAGAAAAAAAGGAGAGRQQAYGPGGSGAAAAGSG 2256 Score = 60.5 bits (145), Expect = 6e-08 Identities = 64/204 (31%), Positives = 83/204 (40%), Gaps = 38/204 (18%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRT----------------PGRAFDAAMTPTYAY 136 AAA+A A A P ++GY PG G PG A AA + Sbjct: 445 AAAAAAAAAGGAGPGRQQGYGPGGSGAAAATAAGGPGYVGQQRYGPGGAGAAAAAAAGSA 504 Query: 137 SPARART--PGGT----AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT--- 289 P+R + PGG+ A + A +GP G+ P A+ ++A A G A PGR Sbjct: 505 GPSRQQAYGPGGSGPAAATAAAGSGPSGYGP-GASGPVGADAAAAAATGSAGPGRQQAYG 563 Query: 290 PGRSPA----------GR---FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430 PG S A GR + P S A+ AA P +GG G GP GGAGA A A+ Sbjct: 564 PGESGAAAAAASGAGPGRQLGYGPGGSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAA 622 Query: 431 AYMATSPGMGYSPSTPALAVSSPG 502 Y P A ++ G Sbjct: 623 GGAGPGRQQTYGPGGSGAAATAAG 646 Score = 60.1 bits (144), Expect = 8e-08 Identities = 54/163 (33%), Positives = 66/163 (40%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 AA+A A P ++GY PG G A A AY P + G A + A Sbjct: 2367 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GAAAAAAAG 2422 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 TGP G+ P A A AA A G PGR A + P S A+ AA P Sbjct: 2423 TGPSGYGPGAAGPG------GAGAAAAAAAGGAGPGRQQA--YGPGGSGAAAAAAAGGPG 2474 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 +GG G GP GGAGA A A+ Y P A ++ Sbjct: 2475 YGGQQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 2516 Score = 59.3 bits (142), Expect = 1e-07 Identities = 54/166 (32%), Positives = 65/166 (39%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A P GY PG G G A AA S G + + P+ Sbjct: 2696 AAAAAAAAAGPG----PSGYGPGASGPSGTGGAGAAAAAAAAGGSGPGGYGQGASGYGPS 2751 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GPGG + P S A AA A G PGR + P S A+ AA P Sbjct: 2752 --GPGG------QQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 2801 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 +GG G GP GGAGA A A+ Y P A ++ G Sbjct: 2802 GYGGPQGYGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAAAG 2846 Score = 58.9 bits (141), Expect = 2e-07 Identities = 62/182 (34%), Positives = 74/182 (40%), Gaps = 17/182 (9%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 AA+A A P ++GY PG G A A AY P + A A Sbjct: 1094 AAAAAAAVGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGSGATAAAAV--AG 1150 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMT---PGRSPA----------GR---FT 319 +GP G+ P A A+ +A AAG A PGR PG S A GR + Sbjct: 1151 SGPSGYGPGGAGAA------AAAAAGGAGPGRQQAYGPGGSGAAAAAASGAGPGRQQVYG 1204 Query: 320 PRMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 P S A+ AA P +GG G GP G GA A A A A T G S A A + Sbjct: 1205 PGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGSGAAAAAAG 1264 Query: 497 PG 502 PG Sbjct: 1265 PG 1266 Score = 58.9 bits (141), Expect = 2e-07 Identities = 64/183 (34%), Positives = 77/183 (42%), Gaps = 18/183 (9%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 AA+A A P ++GY PG G A A AY P + G TA + A Sbjct: 1872 AAAAAAAVGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GATAAAAAA 1927 Query: 188 -TGPGGFSPINATASFSPIMSSADAAGRATPGRMT---PGRSPA----------GR---F 316 +GP G+ P A A+ +A AAG A PGR PG S A GR + Sbjct: 1928 GSGPSGYGPGGAGAA------AAAAAGGAGPGRQQAYGPGGSGAAAAAASGAGPGRQQVY 1981 Query: 317 TPRMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMGYSPSTPALAVS 493 P S A+ AA P +GG G GP G GA A A A A T G S A A + Sbjct: 1982 GPVGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGSGAAAAAA 2041 Query: 494 SPG 502 PG Sbjct: 2042 GPG 2044 Score = 58.5 bits (140), Expect = 2e-07 Identities = 60/188 (31%), Positives = 71/188 (37%), Gaps = 22/188 (11%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 AA+A A P ++GY PG G A A AY P + G A + A Sbjct: 1589 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GAAAAAAAG 1644 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMT---PGRSPAGRFTPRMSPASPGYAAM 358 TGP G+ P A ++A AAG A PGR PG S A P G Sbjct: 1645 TGPSGYGP-GAAGPGGAGAAAAAAAGSAGPGRQQAYGPGGSGAAAAAAAGGPGYGGQQGY 1703 Query: 359 SPRFGGGLGGGPAGGAG-----AYAP----ASPAYMATSPG------MGYSPSTP----A 481 P G AGGAG AY P A+ A A + G GY P + A Sbjct: 1704 GPGGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAAAGGAGPDRQQGYGPGSSGAAAA 1763 Query: 482 LAVSSPGY 505 A PGY Sbjct: 1764 AAAGGPGY 1771 Score = 58.5 bits (140), Expect = 2e-07 Identities = 52/164 (31%), Positives = 63/164 (38%), Gaps = 7/164 (4%) Frame = +2 Query: 35 PAMPESERGYTPGREGQRTPGRAFDAAMTP--TYAYSP-ARARTPGGTAFSPAYTGPGGF 205 P P ++GY PG G A P Y P + A P Y G G+ Sbjct: 2990 PTGPVGQQGYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGYGGQQGY 3049 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 P A A ++A AAG A PGR + P S A+ AA P +GG G Sbjct: 3050 GPGGAGA------AAAVAAGGAGPGRQQ-------GYGPGSSGAAAAAAAGGPGYGGQQG 3096 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAVSSPGY 505 GP GGAGA A + GY P + A A PGY Sbjct: 3097 YGP-GGAGAAAAVAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 3139 Score = 57.0 bits (136), Expect = 7e-07 Identities = 51/167 (30%), Positives = 63/167 (37%), Gaps = 4/167 (2%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP----ARARTPGGTAF 175 AA+A A P ++GY PG G A A Y P A A GG+ Sbjct: 592 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQTYGPGGSGAAATAAGGSGP 650 Query: 176 SPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355 GP G+ P + AA A G PGR + PR S A+ AA Sbjct: 651 GGYGQGPSGYGPSGPGGQQGYGPGGSGAAAAAAAGEAGPGRQQG--YGPRGSGAAAAAAA 708 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 P +GG G GP GGAGA A A+ Y P A ++ Sbjct: 709 GGPGYGGQSGYGP-GGAGAAAAAAAGGAGPGRQQEYGPGGSGAAAAA 754 Score = 57.0 bits (136), Expect = 7e-07 Identities = 52/160 (32%), Positives = 63/160 (39%), Gaps = 3/160 (1%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA---YTGP 196 A + A GY PG G PG A AA + A PGG P+ +GP Sbjct: 2036 AAAAAAGPGPSGYGPGAAGPSGPGLAGAAAA------AAAGGSGPGGNGQRPSGYGQSGP 2089 Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 GG + P S A AA A G PGR + P S A+ AA P +GG Sbjct: 2090 GG------QQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGG 2141 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 G GP GGAGA A A+ Y P A ++ Sbjct: 2142 QQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 2180 Score = 56.6 bits (135), Expect = 9e-07 Identities = 57/184 (30%), Positives = 74/184 (40%), Gaps = 18/184 (9%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGG-----T 169 A A+A A + A P ++ Y PG G A + Y A PGG Sbjct: 972 AGAAAAAAAAGAGPGRQQEYGPGGTGAAAAAAAAAGSGPSGYGQGAAGPSGPGGEGTAAA 1031 Query: 170 AFSPAYTGPGGF--SPINATAS-------FSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322 A + +GPGG+ P +AS + P S AA A G GR + P Sbjct: 1032 AAAAGGSGPGGYGQGPSGYSASGPGGQQGYGPGGSGLAAAAAAAAGGAGTGRQQG--YGP 1089 Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAV 490 S A+ AA+ P +GG G GP GGAGA A A+ Y P +T A AV Sbjct: 1090 GGSGAAAAAAAVGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGATAAAAV 1148 Query: 491 SSPG 502 + G Sbjct: 1149 AGSG 1152 Score = 56.6 bits (135), Expect = 9e-07 Identities = 62/189 (32%), Positives = 76/189 (40%), Gaps = 25/189 (13%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGT--- 169 AAA+A P+ GY PG G PG A AA + P R + PGG+ Sbjct: 1637 AAAAAAAGTGPS------GYGPGAAG---PGGAGAAAAAAAGSAGPGRQQAYGPGGSGAA 1687 Query: 170 ----AFSPAYTGPGGFSPINATAS---------------FSPIMSSADAAGRATPGRMTP 292 A P Y G G+ P A A+ + P S A AA A G P Sbjct: 1688 AAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAAAGGAGP 1747 Query: 293 GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG-MGYSP 469 R + P S A+ AA P +GG G GP GGAGA A+ A A PG GY P Sbjct: 1748 DRQQG--YGPGSSGAAAAAAAGGPGYGGQQGYGP-GGAGA---AAAAAAAAGPGPSGYGP 1801 Query: 470 STPALAVSS 496 A ++ Sbjct: 1802 GGAGAAAAA 1810 Score = 56.6 bits (135), Expect = 9e-07 Identities = 59/200 (29%), Positives = 76/200 (38%), Gaps = 34/200 (17%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP---------ARART 157 AAA+A A A P+ ++GY PG G A Y P A A Sbjct: 1734 AAAAAAAAAGGAGPDRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAAAG 1793 Query: 158 PGGTAFSPAY------------TGPGGFS--PINATAS-------FSPIMSSADAAGRAT 274 PG + + P +GPGG+ P +AS + P S AA A Sbjct: 1794 PGPSGYGPGGAGAAAAAAAAGGSGPGGYGQGPSGYSASGPGGQQGYGPGGSGLAAAAAAA 1853 Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454 G GR + P S A+ AA+ P +GG G GP GGAGA A A+ Sbjct: 1854 AGGAGTGRQQG--YGPGGSGAAAAAAAVGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGRQ 1910 Query: 455 MGYSP----STPALAVSSPG 502 Y P +T A A + G Sbjct: 1911 QAYGPGGSGATAAAAAAGSG 1930 Score = 56.6 bits (135), Expect = 9e-07 Identities = 58/181 (32%), Positives = 69/181 (38%), Gaps = 15/181 (8%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP---------ARARTP 160 AA+A A P ++GY PG G A A AY P A A P Sbjct: 2648 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGAGAAAAAAAAAGP 2706 Query: 161 GGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340 G + + P +GP G A A+ A AAG + PG G S Sbjct: 2707 GPSGYGPGASGPSGTGGAGAAAA-------AAAAGGSGPGGYGQGAS------------- 2746 Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG--MGYSPSTP----ALAVSSPG 502 GY P GG G GP GG+GA A A+ A PG GY P + A A PG Sbjct: 2747 -GYGPSGP--GGQQGYGP-GGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPG 2802 Query: 503 Y 505 Y Sbjct: 2803 Y 2803 Score = 56.2 bits (134), Expect = 1e-06 Identities = 59/202 (29%), Positives = 72/202 (35%), Gaps = 45/202 (22%) Frame = +2 Query: 35 PAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP-----ARARTPGGTAFSPAYTGPG 199 P+ P ++GY PG G A +A Y P A A GG P Y G Sbjct: 662 PSGPGGQQGYGPGGSGAAAAAAAGEAGPGRQQGYGPRGSGAAAAAAAGG----PGYGGQS 717 Query: 200 GFSPINATASFSPIMSSADAAGRATPGRM----------------TPGRSPAGRFTPRMS 331 G+ P A A+ +A AAG A PGR G P+G Sbjct: 718 GYGPGGAGAA------AAAAAGGAGPGRQQEYGPGGSGAAAAAAAAAGSGPSGYGPGAAG 771 Query: 332 PASPGYAAMSPRFGGG---LGGGPAG---------------GAGAYAPASPAYMATSPG- 454 P PG A + G G G GP+G G+GA A A+ A PG Sbjct: 772 PIGPGGAGAAAAGGSGPVGYGQGPSGYGASGTGGEQDYGPGGSGAAAAAAAAAGGAGPGR 831 Query: 455 -MGYSP----STPALAVSSPGY 505 GY P + A A PGY Sbjct: 832 QQGYGPGGSGAAAAAAAGGPGY 853 Score = 56.2 bits (134), Expect = 1e-06 Identities = 55/172 (31%), Positives = 68/172 (39%), Gaps = 6/172 (3%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 AA+A A P ++GY PG G A A AY P + G A + A Sbjct: 1988 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGS----GAAAAAAG 2042 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 GP G+ P A S + +A AA G G+ P+ GY P Sbjct: 2043 PGPSGYGPGAAGPSGPGLAGAAAAAAAGGSGPGGNGQRPS------------GYGQSGP- 2089 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPG--MGYSP----STPALAVSSPGY 505 GG G GP GG+GA A A+ A PG GY P + A A PGY Sbjct: 2090 -GGQQGYGP-GGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 2139 Score = 56.2 bits (134), Expect = 1e-06 Identities = 55/185 (29%), Positives = 66/185 (35%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 A A+A +A A P ++GY PG G A Y P A A A Sbjct: 3054 AGAAAAVAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAVAAGGA 3113 Query: 185 YTG------PGGFSPINATASFSPI--------MSSADAAGRATPGRMTPGRSPAGRFTP 322 G PG A A+ P + A AA G PGR A + P Sbjct: 3114 GPGRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGLGVAGAAAAVAAGGAGPGRQQA--YGP 3171 Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAV 490 S A+ AA S R G G G GGAGA A A+ + Y P + A A Sbjct: 3172 GGSGAAAAAAAGSGRSGYGPGAAGTGGAGAAAAAAAGGAGSGRQQAYGPGGSGAAAASAA 3231 Query: 491 SSPGY 505 PGY Sbjct: 3232 GGPGY 3236 Score = 55.8 bits (133), Expect = 2e-06 Identities = 50/157 (31%), Positives = 60/157 (38%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205 A + A GY PG G PG A AA + A PGG P+ G G Sbjct: 1258 AAAAAAGPGPSGYGPGAAGPSGPGLAGAAAA------AAAGGSGPGGNGQRPSGYGQSG- 1310 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 + P S A AA A G PGR + P S A+ AA P +GG G Sbjct: 1311 --TGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGQQG 1366 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 GP GGAGA A A+ Y P A ++ Sbjct: 1367 YGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 1402 Score = 55.8 bits (133), Expect = 2e-06 Identities = 56/165 (33%), Positives = 69/165 (41%), Gaps = 1/165 (0%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 A A+A A A P ++ Y PG G A AA Y + PGG A + A Sbjct: 2438 AGAAAAAAAGGAGPGRQQAYGPGGSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAA 2490 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GG P ++ P S A AA A G P R + P S A+ AA P Sbjct: 2491 AAAAGGAGP-GTQQAYGPGGSGAAAAAAAAAGGAGPDRQQG--YGPGSSGAAAAAAAGGP 2547 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496 +GG G GP GGAGA A+ A A PG GY P A ++ Sbjct: 2548 GYGGQQGYGP-GGAGA---AAAAAAAAGPGPSGYGPGGAGAAAAA 2588 Score = 55.5 bits (132), Expect = 2e-06 Identities = 53/176 (30%), Positives = 66/176 (37%), Gaps = 10/176 (5%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 A A+A A A P ++ Y PG G A + Y A PGG + A Sbjct: 724 AGAAAAAAAGGAGPGRQQEYGPGGSGAAAAAAAAAGSGPSGYGPGAAGPIGPGGAGAAAA 783 Query: 185 Y--------TGPGGF--SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334 GP G+ S + P S A AA A G PGR + P S Sbjct: 784 GGSGPVGYGQGPSGYGASGTGGEQDYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGGSG 841 Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 A+ AA P +GG G GP GGAGA A A+ Y P A ++ G Sbjct: 842 AAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGRQQPYGPGGAGAAAAAAG 896 Score = 55.5 bits (132), Expect = 2e-06 Identities = 62/180 (34%), Positives = 76/180 (42%), Gaps = 24/180 (13%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYT--------------PGREGQRT--PGRAFDAAMTPTYAY 136 AAA+A A A P ++GY PG GQ+ PG A AA Sbjct: 3343 AAAAAAAAAGGAGPGRQQGYGQGSSGAAAAAAAGGPGYGGQQVYGPGGAGAAAAVAAGGA 3402 Query: 137 SPAR--ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAG 310 P R A PGG+ + A +GP G+ P A A+ AAG A PGR Sbjct: 3403 GPGRQQAYGPGGSG-AAAGSGPSGYGPGAAAAA---------AAGGAGPGRQQ------- 3445 Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG------MGYSPS 472 + P S A+ AA P +GG G GP GGAGA A A+ + PG GY PS Sbjct: 3446 AYGPGGSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAAG--GSGPGGYGQGPSGYGPS 3502 Score = 55.1 bits (131), Expect = 3e-06 Identities = 58/178 (32%), Positives = 66/178 (37%), Gaps = 15/178 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A P GY PG G P A AA A + A PGG P+ Sbjct: 3273 AAAAAAAASGPG----PSGYEPGAAGPSGPAGAGAAA-----AAAAAGGSGPGGYGQGPS 3323 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GP G + P S A AA A G PGR + S A+ AA P Sbjct: 3324 GYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGQGSSGAAAAAAAGGP 3378 Query: 365 RFGGGLGGGP----------AGGAG-----AYAPASPAYMATSPGMGYSPSTPALAVS 493 +GG GP AGGAG AY P A S GY P A A + Sbjct: 3379 GYGGQQVYGPGGAGAAAAVAAGGAGPGRQQAYGPGGSGAAAGSGPSGYGPGAAAAAAA 3436 Score = 54.7 bits (130), Expect = 3e-06 Identities = 59/178 (33%), Positives = 68/178 (38%), Gaps = 11/178 (6%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A A P ++GY PG G A A GG P Sbjct: 816 AAAAAAAAAGGAGPGRQQGYGPGGSGA-------------------AAAAAAGG----PG 852 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP-GRSPAGRFTPRMSPASPG----- 346 Y G G+ P A A+ +A AAG A PGR P G AG + PG Sbjct: 853 YGGQQGYGPGGAGAA------AAAAAGGAGPGRQQPYGPGGAGAAAAAAGGSGPGGYGQG 906 Query: 347 ---YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP--STPALAVSSPGY 505 Y A P GG G GP GG+GA A A+ GY P S A A GY Sbjct: 907 PSGYGASGP--GGQQGFGP-GGSGAAAAAAAGGAGPGRQQGYGPGGSGAAAAAGGTGY 961 [102][TOP] >UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis elegans RepID=RPB1_CAEEL Length = 1852 Score = 65.1 bits (157), Expect = 3e-09 Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Frame = +2 Query: 104 FDAAMTPTYA---YSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274 +++ +TPTYA +SP G FSPA GG SP N +SP S D G + Sbjct: 1504 WNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNE-GGWSPA-SPGDPLGALS 1561 Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454 P + G G + SP+SP ++ SP Y+P SP+Y TSP Sbjct: 1562 PRTPSYGGMSPGVY----SPSSPQFSMTSPH---------------YSPTSPSYSPTSPA 1602 Query: 455 MGYSPSTPALAVSSPGY 505 G SP +P+ + +SP Y Sbjct: 1603 AGQSPVSPSYSPTSPSY 1619 Score = 60.5 bits (145), Expect = 6e-08 Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 16/176 (9%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAA----MTPTYA-YSPARARTPGGTAFSPAYT 190 A SP P S G +PG +P + + +P+Y+ SPA ++P ++SP T Sbjct: 1559 ALSPRTP-SYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSP--T 1615 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP+SP Y+ SPR Sbjct: 1616 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPR 1674 Query: 368 FG------GGLGGGPAGGAGAYAPASPAYMATSP----GMGYSPSTPALAVSSPGY 505 + + + Y+P SP Y TSP G GYSPS+P + SSP Y Sbjct: 1675 YSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTY 1730 Score = 57.0 bits (136), Expect = 7e-07 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 1/159 (0%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAYTGPGGFS 208 SP+ + Y+P ++ +PT +YSP +P + SP+Y+ P S Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT---SPSYSPTSPSYS-PSSPS 1660 Query: 209 PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388 ++ S+SP S + T +P SP +P SP SP Y+ SP + G G Sbjct: 1661 YSPSSPSYSP-SSPRYSPTSPTYSPTSPTYSPT---SPTYSPTSPTYSPTSPSYESG--G 1714 Query: 389 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G + + Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1715 GYSPSSPKYSPSSPTYSPTSP--SYSPTSPQYSPTSPQY 1751 Score = 54.7 bits (130), Expect = 3e-06 Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 39/197 (19%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196 SP+ S Y+P + +P + +PTY+ YSP +P + SP+Y Sbjct: 1658 SPSYSPSSPSYSPSSP-RYSPTSPTYSPTSPTYSPTSPTYSPT---SPTYSPTSPSYESG 1713 Query: 197 GGFSPIN-----ATASFSPIMSS---------------ADAAGRATPGRMTPG-RSPAGR 313 GG+SP + ++ ++SP S + ++ TP T SP G Sbjct: 1714 GGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGF 1773 Query: 314 FTPRMSPASPGYAAMSPRFGGG-------------LGGGPAGGAGAYAPASPAYMATSPG 454 +P+ SP SP Y+ SP + G + Y+P SP Y +SP Sbjct: 1774 SSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSP- 1832 Query: 455 MGYSPSTPALAVSSPGY 505 YSP++P+ + SSP Y Sbjct: 1833 -TYSPASPSYSPSSPTY 1848 [103][TOP] >UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 18 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B27 Length = 1831 Score = 64.7 bits (156), Expect = 3e-09 Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Frame = +2 Query: 71 GREGQRTPGRAFDAAMTPTYA-YSPA-RARTPGG-TAFSPAY--TGPGGFSPINATAS-F 232 GR G TPG A AM+P+Y+ SPA R+PGG T SP+Y T P +SP + + S Sbjct: 1494 GRSGM-TPGAA-GGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS-YSPTSPSYSPT 1550 Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412 SP S + T +P +P SP SP Y+ SP + + + + Sbjct: 1551 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1602 Query: 413 YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1603 YSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1631 Score = 55.8 bits (133), Expect = 2e-06 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 11/169 (6%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFSPA 184 SP+ + Y+P ++ +P+Y+ YSP+R +P + SP+ Sbjct: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSPTSPS 1686 Query: 185 Y--TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 Y T P ++P++ S +P S + T + +P +P+ SP SP Y+ Sbjct: 1687 YSPTSPN-YTPMSPNYSPTPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPT 1745 Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +P++ + + Y+P SP Y TSP YSP++P + +SP Y Sbjct: 1746 TPKY--------SPTSPTYSPTSPVYTPTSP--KYSPTSPTYSPTSPKY 1784 Score = 55.5 bits (132), Expect = 2e-06 Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 SP+ + Y+P R TP + +P+Y SP +P T SP Y+ +SP Sbjct: 1656 SPSYSPTSPNYSPSRPNY-TPTSPSYSPTSPSY--SPT---SPNYTPMSPNYSPTPSYSP 1709 Query: 212 INATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG----- 373 + + SP S T + +P TP+ SP SP Y+ SP + Sbjct: 1710 SSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPK 1769 Query: 374 -GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505 + + Y+P SP Y TSP G YSP++P + +SP Y Sbjct: 1770 YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1815 Score = 53.5 bits (127), Expect = 8e-06 Identities = 34/83 (40%), Positives = 45/83 (54%) Frame = +2 Query: 257 AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436 AAGR+ MTPG + G +P SP SP Y SP GG + +Y+P SP+Y Sbjct: 1492 AAGRSG---MTPGAA-GGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSY 1540 Query: 437 MATSPGMGYSPSTPALAVSSPGY 505 TSP YSP++P + +SP Y Sbjct: 1541 SPTSP--SYSPTSPNYSPTSPSY 1561 [104][TOP] >UniRef100_Q9BIT7 Major ampullate spidroin 2-like protein (Fragment) n=1 Tax=Nephila inaurata madagascariensis RepID=Q9BIT7_9ARAC Length = 1953 Score = 64.7 bits (156), Expect = 3e-09 Identities = 56/171 (32%), Positives = 67/171 (39%), Gaps = 5/171 (2%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A R P GY PG++G PG A AA + Y R PG A Sbjct: 112 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGSEGYGPGQQGPRGPGAAA---- 161 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GPGG+ P AS + ++ G PG+ PG A P PG S Sbjct: 162 -AGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAAAGP--GGYGPGQQGPSA 218 Query: 365 RFGGGLGGGPAG-GAGAYAPASP--AYMATSPGMGYSPST--PALAVSSPG 502 G GP G G G P P A A PG GY P P A ++ G Sbjct: 219 AAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGPG-GYGPGQQGPGAAAAAAG 268 Score = 62.8 bits (151), Expect = 1e-08 Identities = 58/187 (31%), Positives = 73/187 (39%), Gaps = 21/187 (11%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A P GY PG++G G A AA Y P + + PGG + A Sbjct: 1515 AAAAAAAGTGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 1567 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRMSP 334 GPGG+ P + ++ G PG+ P GR P G + P Sbjct: 1568 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGP 1627 Query: 335 ASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPST-------PA 481 PG AA + G G GP GG+GA A AS PG GY P A Sbjct: 1628 GGPGAAAAAAAGRGPGGYGPGQQGPGGSGAAAAAS----GRGPG-GYGPGQQGPGGPGAA 1682 Query: 482 LAVSSPG 502 A + PG Sbjct: 1683 AAAAGPG 1689 Score = 62.0 bits (149), Expect = 2e-08 Identities = 51/171 (29%), Positives = 65/171 (38%), Gaps = 5/171 (2%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A R P GY PG++G G A AA Y P + + PGG + A Sbjct: 511 AAAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 563 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GPGG+ P + ++ AG PG+ PG A PG Sbjct: 564 AAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGA 623 Query: 365 RFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG-YSPSTP---ALAVSSPG 502 G GP G G G P + A + G G Y P A A +S G Sbjct: 624 AAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAG 674 Score = 60.8 bits (146), Expect = 5e-08 Identities = 60/184 (32%), Positives = 75/184 (40%), Gaps = 18/184 (9%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTA--- 172 AAA+A +A S GY P ++G PG A AA Y P R + PG TA Sbjct: 38 AAAAAAVAPS--------GYGPSQQGPSGPGAATAAAAGRGPEGYGP-RQQGPGATAAAA 88 Query: 173 ----FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG-RSPAGRFTPRMSPA 337 + P GPGG+ P P ++A AAGR PG PG + P G + Sbjct: 89 GPGGYGPRQQGPGGYGP----GQQGPGAAAAAAAGRG-PGGYGPGQQGPGGPGAAAAAAG 143 Query: 338 SPGY--AAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG------YSPSTPALAV 490 S GY PR G GP G G G ++ A A G G P P+ A Sbjct: 144 SEGYGPGQQGPRGPGAAAAGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAA 203 Query: 491 SSPG 502 + PG Sbjct: 204 AGPG 207 Score = 60.5 bits (145), Expect = 6e-08 Identities = 57/182 (31%), Positives = 71/182 (39%), Gaps = 16/182 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARA----RTPGGT 169 AAA+A R P GY PG++G PG A AA Y P + + PGG Sbjct: 1095 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGP 1148 Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 + A GPGG+ P + ++ AG PG+ PG A PG Sbjct: 1149 GAAAAAAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQ 1208 Query: 350 ----AAMSPRFGGGLGG------GPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496 AA + G G GG GP G + A A A P PG G + A A S Sbjct: 1209 QGPGAAAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPG--RYGPGQQGPGAAAAAAAGSG 1266 Query: 497 PG 502 PG Sbjct: 1267 PG 1268 Score = 60.5 bits (145), Expect = 6e-08 Identities = 48/160 (30%), Positives = 60/160 (37%), Gaps = 6/160 (3%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 AA+A R P GY PG++G G A AA Y P + + PGG + A Sbjct: 1794 AAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAAA 1846 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 GPGG+ P + ++ AG PG+ PG A PG Sbjct: 1847 AGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA 1906 Query: 368 FGGGLGGGPAG-GAGAYAPASPAYMATS-----PGMGYSP 469 G GP G G G P P A + PG GY P Sbjct: 1907 AAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPG-GYGP 1945 Score = 60.1 bits (144), Expect = 8e-08 Identities = 56/159 (35%), Positives = 69/159 (43%), Gaps = 5/159 (3%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTAFSPA 184 AA+A R P GY PG++G PG A AA Y P + + PGG + A Sbjct: 262 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 314 Query: 185 YTGPGGFSP----INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352 GPGG+ P P ++A AAGR PG PG+ G+ P S A+ A Sbjct: 315 AAGPGGYGPGGYGPGQQGPGGPGAAAAAAAGRG-PGGYGPGQQGPGQQGPGGSGAAAAAA 373 Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469 P GG G G G G A A+ A PG GY P Sbjct: 374 GRGP---GGYGPGQQGPGGPGAAAA----AAGPG-GYGP 404 Score = 60.1 bits (144), Expect = 8e-08 Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A P GY PG++G PG A AA + PGG + A Sbjct: 711 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 764 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328 GPGG+ P + ++ G PG+ PGRS P G + Sbjct: 765 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 824 Query: 329 SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499 P PG AA + GG G GP A A A P Y G G S + A A P Sbjct: 825 GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 884 Query: 500 G 502 G Sbjct: 885 G 885 Score = 60.1 bits (144), Expect = 8e-08 Identities = 50/162 (30%), Positives = 65/162 (40%), Gaps = 14/162 (8%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238 GY PG++G T A AA + Y P + + PGG + A GPGG+ P + Sbjct: 1159 GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 1215 Query: 239 IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397 ++ G PG+ PG S A GR+ P AA + GG G G Sbjct: 1216 AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAAAAGSGPGGYGPGQQ 1275 Query: 398 GGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502 G G A A+ A PG GY P A A + PG Sbjct: 1276 GPGGPGAAAAAAAAGRGPG-GYGPGQQGPGGPGAAAAAAGPG 1316 Score = 60.1 bits (144), Expect = 8e-08 Identities = 55/182 (30%), Positives = 71/182 (39%), Gaps = 16/182 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178 AAA+A P GY PG++G PG A AA Y P + + PGG + Sbjct: 1257 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1309 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP-----------GRSPAGRFTPR 325 A GPGG+ P + ++ G PG+ P GR P G + Sbjct: 1310 AAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQ 1369 Query: 326 MSPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSS 496 P PG AA + GG G GP A A A + P Y G G S + A A + Sbjct: 1370 QGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAG 1429 Query: 497 PG 502 G Sbjct: 1430 RG 1431 Score = 60.1 bits (144), Expect = 8e-08 Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A P GY PG++G PG A AA + PGG + A Sbjct: 1327 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 1380 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328 GPGG+ P + ++ G PG+ PGRS P G + Sbjct: 1381 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 1440 Query: 329 SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499 P PG AA + GG G GP A A A P Y G G S + A A P Sbjct: 1441 GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 1500 Query: 500 G 502 G Sbjct: 1501 G 1501 Score = 59.7 bits (143), Expect = 1e-07 Identities = 51/159 (32%), Positives = 61/159 (38%), Gaps = 7/159 (4%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGTAFS 178 AAA+A R P GY PG++G G A AA Y P + PG A + Sbjct: 1466 AAAAASAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1519 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRAT----PGRMTPGRSPAGRFTPRMSPASPG 346 A TGPGG+ P S ++A AAGR PG+ PG A PG Sbjct: 1520 AAGTGPGGYGPGQQGPGGSG--AAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPG 1577 Query: 347 YAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG 460 G GP G G G P P A + G G Sbjct: 1578 QQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRG 1616 Score = 59.3 bits (142), Expect = 1e-07 Identities = 52/162 (32%), Positives = 67/162 (41%), Gaps = 14/162 (8%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238 GY PG++G T A AA + Y P + + PGG + A GPGG+ P + Sbjct: 569 GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 625 Query: 239 IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397 ++ G PG+ PG S A GR+ P AA + R GG G G Sbjct: 626 AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAGRGPGGYGPGQQ 685 Query: 398 GGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502 G G A A+ A PG GY P + A A S PG Sbjct: 686 GPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 722 Score = 58.5 bits (140), Expect = 2e-07 Identities = 58/189 (30%), Positives = 73/189 (38%), Gaps = 23/189 (12%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178 AAA+A P GY PG++G G A AA Y P + + PGG + Sbjct: 1396 AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1448 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328 A GPGG+ P + S+ G PG+ P GR P G + Sbjct: 1449 AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 1508 Query: 329 SPASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPST------- 475 P PG AA + G G GP GG+GA A A+ PG GY P Sbjct: 1509 GPGGPGAAAAAAAGTGPGGYGPGQQGPGGSGAAAAAA----GRGPG-GYGPGQQGPGGPG 1563 Query: 476 PALAVSSPG 502 A A + PG Sbjct: 1564 AAAAAAGPG 1572 Score = 58.5 bits (140), Expect = 2e-07 Identities = 56/187 (29%), Positives = 65/187 (34%), Gaps = 21/187 (11%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP-------------- 142 AAA+A P GY PG++G PG A AA Y P Sbjct: 1583 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1636 Query: 143 ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322 A R PGG + P GPGG A + P G PG P G Sbjct: 1637 AAGRGPGG--YGPGQQGPGGSGAAAAASGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPG 1694 Query: 323 RMSPASPGYAAMSPRFGGGLG------GGPAGGAGAYAPASP-AYMATSPGMGYSPSTPA 481 + P + AA + R GG G GGP A A A P Y G G S + A Sbjct: 1695 QQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGGSGAAAA 1754 Query: 482 LAVSSPG 502 A PG Sbjct: 1755 AAGRGPG 1761 Score = 58.2 bits (139), Expect = 3e-07 Identities = 59/172 (34%), Positives = 73/172 (42%), Gaps = 6/172 (3%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREG--QRTPG---RAFDAAMTPTYAYSPARARTPGGT 169 AAA+A R P GY PG++G Q+ PG A AA Y P + + PGG Sbjct: 899 AAAAAAAGRGPG------GYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGP 951 Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 + A GPGG+ P P ++A AAG + PG PG + P PG Sbjct: 952 GAAAAAAGPGGYGP----GQQGPGAAAAAAAG-SGPGGYGPG---------QQGPGGPGA 997 Query: 350 AAMSPRFG-GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 AA + G GG G G G G A A+ A PG GY P PG Sbjct: 998 AAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQGPG 1047 Score = 57.8 bits (138), Expect = 4e-07 Identities = 57/186 (30%), Positives = 64/186 (34%), Gaps = 20/186 (10%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA---YSP----------- 142 AAA+A R P GY PG++G PG A AA Y Y P Sbjct: 286 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGGYGPGQQGPGGPGAA 339 Query: 143 ---ARARTPGGTA---FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSP 304 A R PGG P GPGG A A P G PG P Sbjct: 340 AAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGP 399 Query: 305 AGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL 484 G + P + AA + R GG G G G G A A+ A PG GY P Sbjct: 400 GGYGPGQQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGP 457 Query: 485 AVSSPG 502 PG Sbjct: 458 GQQGPG 463 Score = 57.4 bits (137), Expect = 5e-07 Identities = 55/183 (30%), Positives = 62/183 (33%), Gaps = 17/183 (9%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP-------------- 142 AAA+A P GY PG++G PG A AA Y P Sbjct: 972 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1025 Query: 143 ARARTPGGTA---FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGR 313 A R PGG P GPGG A A P G PG P G Sbjct: 1026 AAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGY 1085 Query: 314 FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS 493 + P + AA + R GG G G G G A A+ A PG GY P Sbjct: 1086 GPGQQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQ 1143 Query: 494 SPG 502 PG Sbjct: 1144 GPG 1146 Score = 57.0 bits (136), Expect = 7e-07 Identities = 55/176 (31%), Positives = 64/176 (36%), Gaps = 10/176 (5%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA---F 175 AAA+A R P GY PG++G PG A AA R PGG Sbjct: 412 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGGYGPGQQ 455 Query: 176 SPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355 P GPGG A A P G PG P G + P + AA Sbjct: 456 GPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAA 515 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502 + R GG G G G G+ A A+ A PG GY P A A + PG Sbjct: 516 AAGRGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 568 Score = 56.6 bits (135), Expect = 9e-07 Identities = 61/200 (30%), Positives = 72/200 (36%), Gaps = 35/200 (17%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY----------AYSPARART 157 AA+A R P GY PG++G PG A AA Y A + A R Sbjct: 467 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAAGRG 520 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 PGG + P GPGG A A P G PG P G + P Sbjct: 521 PGG--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGT 577 Query: 338 SPGYAAMSPRFGGGLG------GGP-----AGGAGAYAP-------ASPAYMATSPGMGY 463 AA + GG G GGP A G G Y P A+ A + PG GY Sbjct: 578 GAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPG-GY 636 Query: 464 SP-------STPALAVSSPG 502 P S+ A A + PG Sbjct: 637 GPGQQGPGGSSAAAAAAGPG 656 Score = 56.6 bits (135), Expect = 9e-07 Identities = 53/187 (28%), Positives = 68/187 (36%), Gaps = 21/187 (11%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178 AAA+A P GY PG++G G A AA Y P + + PGG + Sbjct: 780 AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 832 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328 A GPGG+ P + S+ G PG+ P GR P G + Sbjct: 833 AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 892 Query: 329 SPASPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPGMG--------YSPSTPA 481 P PG AA + G G GP G G P A + G G P P Sbjct: 893 GPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPG 952 Query: 482 LAVSSPG 502 A ++ G Sbjct: 953 AAAAAAG 959 Score = 56.6 bits (135), Expect = 9e-07 Identities = 57/180 (31%), Positives = 66/180 (36%), Gaps = 15/180 (8%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--------AYSPARARTPG 163 AA+A R P GY PG++G PG A AA Y A + A R PG Sbjct: 1751 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAGRGPG 1804 Query: 164 GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 G + P GPGG A A P G PG P G + P Sbjct: 1805 G--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGTGA 1861 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502 AA + GG G G G G A A+ A PG GY P + A A S PG Sbjct: 1862 AAAAAAGSGAGGYGPGQQGPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 1916 Score = 56.2 bits (134), Expect = 1e-06 Identities = 55/173 (31%), Positives = 65/173 (37%), Gaps = 7/173 (4%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A R P GY PG++G PG A AA R PGG + P Sbjct: 1701 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGG--YGPG 1742 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GPGG A A P G PG P G + P + AA + Sbjct: 1743 QQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA--AAAAG 1800 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502 R GG G G G G+ A A+ A PG GY P A A + PG Sbjct: 1801 RGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 1850 Score = 53.9 bits (128), Expect = 6e-06 Identities = 53/156 (33%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFS 235 GY PG++G PG A AA + Y P + + PGG++ + A GPG + P Sbjct: 1203 GYGPGQQG---PGAAAAAAAGSGPGGYGPGQ-QGPGGSSAAAAAAGPGRYGP----GQQG 1254 Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------GPA 397 P ++A AAG + PG PG + P PG AA + G G GG GP Sbjct: 1255 PGAAAAAAAG-SGPGGYGPG---------QQGPGGPGAAAAAAAAGRGPGGYGPGQQGPG 1304 Query: 398 GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502 G A A A P PG G + A A S PG Sbjct: 1305 GPGAAAAAAGPG--GYGPGQQGPGAAAAAAAGSGPG 1338 [105][TOP] >UniRef100_Q692F9 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes RepID=Q692F9_NEPCL Length = 313 Score = 64.7 bits (156), Expect = 3e-09 Identities = 54/167 (32%), Positives = 70/167 (41%), Gaps = 1/167 (0%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A P + GY PG++G PG +P+ P A A P Sbjct: 35 AAAAAAAASGPGQ-QGPGGYGPGQQG---PGGYGPGQQSPS---GPGSAAAAAAAAAGPG 87 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMS 361 GPGG+ P S P +SA AA A PG PG+ G + P + P+ PG AA + Sbjct: 88 QQGPGGYGPGQQGPS-GPGSASA-AAAAAGPGGYGPGQQGPGGYAPGQQGPSGPGSAAAA 145 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 G GG G P A A++ GY P+ A PG Sbjct: 146 AAARAGPGGYGPAQQGPSGPGIAASAASAGPGGYGPAQQGPAGYGPG 192 Score = 53.5 bits (127), Expect = 8e-06 Identities = 44/128 (34%), Positives = 56/128 (43%), Gaps = 13/128 (10%) Frame = +2 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------RSPAGRFT 319 PGG + P GPGG+ P S P ++A AA + PG+ PG + P G Sbjct: 9 PGG--YGPGQQGPGGYGPGQQGPS-GPGSAAAAAAAASGPGQQGPGGYGPGQQGPGGYGP 65 Query: 320 PRMSPASPGYAAMSPRFGGGLG-GGPAG-GAGAYAPASP-----AYMATSPGMGYSPSTP 478 + SP+ PG AA + G G GP G G G P+ P A A PG GY P Sbjct: 66 GQQSPSGPGSAAAAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAGPG-GYGPGQQ 124 Query: 479 ALAVSSPG 502 +PG Sbjct: 125 GPGGYAPG 132 [106][TOP] >UniRef100_Q2VLH2 Major ampullate spidroin 2-like (Fragment) n=1 Tax=Nephila inaurata madagascariensis RepID=Q2VLH2_9ARAC Length = 2069 Score = 64.7 bits (156), Expect = 3e-09 Identities = 56/171 (32%), Positives = 67/171 (39%), Gaps = 5/171 (2%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A R P GY PG++G PG A AA + Y R PG A Sbjct: 279 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGSEGYGPGQQGPRGPGAAA---- 328 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GPGG+ P AS + ++ G PG+ PG A P PG S Sbjct: 329 -AGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAAAGP--GGYGPGQQGPSA 385 Query: 365 RFGGGLGGGPAG-GAGAYAPASP--AYMATSPGMGYSPST--PALAVSSPG 502 G GP G G G P P A A PG GY P P A ++ G Sbjct: 386 AAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGPG-GYGPGQQGPGAAAAAAG 435 Score = 63.2 bits (152), Expect = 1e-08 Identities = 53/169 (31%), Positives = 67/169 (39%), Gaps = 14/169 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A P GY PG++G G A AA Y P + + PGG + A Sbjct: 1648 AAAAAAAGTGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 1700 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRMSP 334 GPGG+ P + ++ G PG+ P GR P G + P Sbjct: 1701 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGP 1760 Query: 335 ASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSP 469 PG AA + G G GP GG+GA A AS S GY P Sbjct: 1761 GGPGAAAAAAAGRGPGGYGPGQQGPGGSGAAAAASGRGPGGSGPGGYGP 1809 Score = 62.0 bits (149), Expect = 2e-08 Identities = 51/171 (29%), Positives = 65/171 (38%), Gaps = 5/171 (2%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A R P GY PG++G G A AA Y P + + PGG + A Sbjct: 661 AAAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 713 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GPGG+ P + ++ AG PG+ PG A PG Sbjct: 714 AAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGA 773 Query: 365 RFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG-YSPSTP---ALAVSSPG 502 G GP G G G P + A + G G Y P A A +S G Sbjct: 774 AAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAG 824 Score = 60.8 bits (146), Expect = 5e-08 Identities = 60/184 (32%), Positives = 75/184 (40%), Gaps = 18/184 (9%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTA--- 172 AAA+A +A S GY P ++G PG A AA Y P R + PG TA Sbjct: 205 AAAAAAVAPS--------GYGPSQQGPSGPGAATAAAAGRGPEGYGP-RQQGPGATAAAA 255 Query: 173 ----FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG-RSPAGRFTPRMSPA 337 + P GPGG+ P P ++A AAGR PG PG + P G + Sbjct: 256 GPGGYGPRQQGPGGYGP----GQQGPGAAAAAAAGRG-PGGYGPGQQGPGGPGAAAAAAG 310 Query: 338 SPGY--AAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG------YSPSTPALAV 490 S GY PR G GP G G G ++ A A G G P P+ A Sbjct: 311 SEGYGPGQQGPRGPGAAAAGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAA 370 Query: 491 SSPG 502 + PG Sbjct: 371 AGPG 374 Score = 60.5 bits (145), Expect = 6e-08 Identities = 57/182 (31%), Positives = 71/182 (39%), Gaps = 16/182 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARA----RTPGGT 169 AAA+A R P GY PG++G PG A AA Y P + + PGG Sbjct: 1228 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGP 1281 Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 + A GPGG+ P + ++ AG PG+ PG A PG Sbjct: 1282 GAAAAAAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQ 1341 Query: 350 ----AAMSPRFGGGLGG------GPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496 AA + G G GG GP G + A A A P PG G + A A S Sbjct: 1342 QGPGAAAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPG--RYGPGQQGPGAAAAAAAGSG 1399 Query: 497 PG 502 PG Sbjct: 1400 PG 1401 Score = 60.5 bits (145), Expect = 6e-08 Identities = 48/160 (30%), Positives = 60/160 (37%), Gaps = 6/160 (3%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 AA+A R P GY PG++G G A AA Y P + + PGG + A Sbjct: 1910 AAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAAA 1962 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 GPGG+ P + ++ AG PG+ PG A PG Sbjct: 1963 AGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA 2022 Query: 368 FGGGLGGGPAG-GAGAYAPASPAYMATS-----PGMGYSP 469 G GP G G G P P A + PG GY P Sbjct: 2023 AAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPG-GYGP 2061 Score = 60.1 bits (144), Expect = 8e-08 Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A P GY PG++G PG A AA + PGG + A Sbjct: 861 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 914 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328 GPGG+ P + ++ G PG+ PGRS P G + Sbjct: 915 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 974 Query: 329 SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499 P PG AA + GG G GP A A A P Y G G S + A A P Sbjct: 975 GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 1034 Query: 500 G 502 G Sbjct: 1035 G 1035 Score = 60.1 bits (144), Expect = 8e-08 Identities = 50/162 (30%), Positives = 65/162 (40%), Gaps = 14/162 (8%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238 GY PG++G T A AA + Y P + + PGG + A GPGG+ P + Sbjct: 1292 GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 1348 Query: 239 IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397 ++ G PG+ PG S A GR+ P AA + GG G G Sbjct: 1349 AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAAAAGSGPGGYGPGQQ 1408 Query: 398 GGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502 G G A A+ A PG GY P A A + PG Sbjct: 1409 GPGGPGAAAAAAAAGRGPG-GYGPGQQGPGGPGAAAAAAGPG 1449 Score = 60.1 bits (144), Expect = 8e-08 Identities = 55/182 (30%), Positives = 71/182 (39%), Gaps = 16/182 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178 AAA+A P GY PG++G PG A AA Y P + + PGG + Sbjct: 1390 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1442 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP-----------GRSPAGRFTPR 325 A GPGG+ P + ++ G PG+ P GR P G + Sbjct: 1443 AAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQ 1502 Query: 326 MSPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSS 496 P PG AA + GG G GP A A A + P Y G G S + A A + Sbjct: 1503 QGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAG 1562 Query: 497 PG 502 G Sbjct: 1563 RG 1564 Score = 60.1 bits (144), Expect = 8e-08 Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A P GY PG++G PG A AA + PGG + A Sbjct: 1460 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 1513 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328 GPGG+ P + ++ G PG+ PGRS P G + Sbjct: 1514 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 1573 Query: 329 SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499 P PG AA + GG G GP A A A P Y G G S + A A P Sbjct: 1574 GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 1633 Query: 500 G 502 G Sbjct: 1634 G 1634 Score = 59.7 bits (143), Expect = 1e-07 Identities = 51/159 (32%), Positives = 61/159 (38%), Gaps = 7/159 (4%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGTAFS 178 AAA+A R P GY PG++G G A AA Y P + PG A + Sbjct: 1599 AAAAASAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1652 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRAT----PGRMTPGRSPAGRFTPRMSPASPG 346 A TGPGG+ P S ++A AAGR PG+ PG A PG Sbjct: 1653 AAGTGPGGYGPGQQGPGGSG--AAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPG 1710 Query: 347 YAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG 460 G GP G G G P P A + G G Sbjct: 1711 QQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRG 1749 Score = 59.3 bits (142), Expect = 1e-07 Identities = 52/162 (32%), Positives = 67/162 (41%), Gaps = 14/162 (8%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238 GY PG++G T A AA + Y P + + PGG + A GPGG+ P + Sbjct: 719 GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 775 Query: 239 IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397 ++ G PG+ PG S A GR+ P AA + R GG G G Sbjct: 776 AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAGRGPGGYGPGQQ 835 Query: 398 GGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502 G G A A+ A PG GY P + A A S PG Sbjct: 836 GPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 872 Score = 58.9 bits (141), Expect = 2e-07 Identities = 57/186 (30%), Positives = 65/186 (34%), Gaps = 20/186 (10%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA---YSP----------- 142 AAA+A A + A GY PG++G PG A AA Y Y P Sbjct: 430 AAAAAGQAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGGYGPGQQGPGGPGAA 489 Query: 143 ---ARARTPGGTA---FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSP 304 A R PGG P GPGG A A P G PG P Sbjct: 490 AAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGP 549 Query: 305 AGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL 484 G + P + AA + R GG G G G G A A+ A PG GY P Sbjct: 550 GGYGPGQQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGP 607 Query: 485 AVSSPG 502 PG Sbjct: 608 GQQGPG 613 Score = 58.5 bits (140), Expect = 2e-07 Identities = 57/182 (31%), Positives = 70/182 (38%), Gaps = 16/182 (8%) Frame = +2 Query: 5 AAASARIARSP--------------AMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP 142 AAASA R P A GY PG++G A AA + Y P Sbjct: 343 AAASAAAGRGPGGYGPGQQGPGGPSAAAAGPGGYGPGQQGPSAAAAA--AAGSGPGGYGP 400 Query: 143 ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322 + + PGG + A GPGG+ P ++A AAG+A GR P G Sbjct: 401 GQ-QGPGGPGAAAAAAGPGGYGPGQQGPG-----AAAAAAGQAAAA--AAGRGPGGYGPG 452 Query: 323 RMSPASPGYAAMSPRFGG-GLGGGPAGGAGAYAPASPAYMATSPGM-GYSPSTPALAVSS 496 + P PG AA + GG G GG G G P + A A G GY P Sbjct: 453 QQGPGGPGAAAAAAGPGGYGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGQQG 512 Query: 497 PG 502 PG Sbjct: 513 PG 514 Score = 58.5 bits (140), Expect = 2e-07 Identities = 58/189 (30%), Positives = 73/189 (38%), Gaps = 23/189 (12%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178 AAA+A P GY PG++G G A AA Y P + + PGG + Sbjct: 1529 AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1581 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328 A GPGG+ P + S+ G PG+ P GR P G + Sbjct: 1582 AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 1641 Query: 329 SPASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPST------- 475 P PG AA + G G GP GG+GA A A+ PG GY P Sbjct: 1642 GPGGPGAAAAAAAGTGPGGYGPGQQGPGGSGAAAAAA----GRGPG-GYGPGQQGPGGPG 1696 Query: 476 PALAVSSPG 502 A A + PG Sbjct: 1697 AAAAAAGPG 1705 Score = 58.2 bits (139), Expect = 3e-07 Identities = 59/173 (34%), Positives = 74/173 (42%), Gaps = 19/173 (10%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 AA+A R P GY PG++G PG A AA Y P + + PG A + A Sbjct: 1673 AAAAAAGRGPG------GYGPGQQGPGGPGAA--AAAAGPGGYGPGQ-QGPGAAAAAAAG 1723 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRAT----PGRMTP-----------GRSPAGRFTP 322 +GPGG+ P P ++A AAGR PG+ P GR P G Sbjct: 1724 SGPGGYGP-GQQGPGGPGAAAA-AAGRGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGPG 1781 Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATS---PGMGYSP 469 + P G AA + G G G GP G G G P + A A + PG GY P Sbjct: 1782 QQGPGGSGAAAAASGRGPG-GSGPGGYGPGQQGPGAAAAAAAAGRGPG-GYGP 1832 Score = 57.0 bits (136), Expect = 7e-07 Identities = 55/176 (31%), Positives = 64/176 (36%), Gaps = 10/176 (5%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA---F 175 AAA+A R P GY PG++G PG A AA R PGG Sbjct: 562 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGGYGPGQQ 605 Query: 176 SPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355 P GPGG A A P G PG P G + P + AA Sbjct: 606 GPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAA 665 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502 + R GG G G G G+ A A+ A PG GY P A A + PG Sbjct: 666 AAGRGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 718 Score = 56.6 bits (135), Expect = 9e-07 Identities = 61/200 (30%), Positives = 72/200 (36%), Gaps = 35/200 (17%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY----------AYSPARART 157 AA+A R P GY PG++G PG A AA Y A + A R Sbjct: 617 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAAGRG 670 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 PGG + P GPGG A A P G PG P G + P Sbjct: 671 PGG--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGT 727 Query: 338 SPGYAAMSPRFGGGLG------GGP-----AGGAGAYAP-------ASPAYMATSPGMGY 463 AA + GG G GGP A G G Y P A+ A + PG GY Sbjct: 728 GAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPG-GY 786 Query: 464 SP-------STPALAVSSPG 502 P S+ A A + PG Sbjct: 787 GPGQQGPGGSSAAAAAAGPG 806 Score = 56.6 bits (135), Expect = 9e-07 Identities = 53/187 (28%), Positives = 68/187 (36%), Gaps = 21/187 (11%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178 AAA+A P GY PG++G G A AA Y P + + PGG + Sbjct: 930 AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 982 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328 A GPGG+ P + S+ G PG+ P GR P G + Sbjct: 983 AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 1042 Query: 329 SPASPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPGMG--------YSPSTPA 481 P PG AA + G G GP G G P A + G G P P Sbjct: 1043 GPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPG 1102 Query: 482 LAVSSPG 502 A ++ G Sbjct: 1103 AAAAAAG 1109 Score = 56.6 bits (135), Expect = 9e-07 Identities = 52/168 (30%), Positives = 59/168 (35%), Gaps = 3/168 (1%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA---FS 178 AA+A R P GY PG++G PG A AA R PGG Sbjct: 1130 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGGYGPGQQG 1173 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 P GPGG A A P G PG P G + P + AA Sbjct: 1174 PGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAA 1233 Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 + R GG G G G G A A+ A PG GY P PG Sbjct: 1234 AGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQGPG 1279 Score = 56.6 bits (135), Expect = 9e-07 Identities = 57/180 (31%), Positives = 66/180 (36%), Gaps = 15/180 (8%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--------AYSPARARTPG 163 AA+A R P GY PG++G PG A AA Y A + A R PG Sbjct: 1867 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAGRGPG 1920 Query: 164 GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 G + P GPGG A A P G PG P G + P Sbjct: 1921 G--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGTGA 1977 Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502 AA + GG G G G G A A+ A PG GY P + A A S PG Sbjct: 1978 AAAAAAGSGAGGYGPGQQGPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 2032 Score = 56.2 bits (134), Expect = 1e-06 Identities = 55/173 (31%), Positives = 65/173 (37%), Gaps = 7/173 (4%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A R P GY PG++G PG A AA R PGG + P Sbjct: 1817 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGG--YGPG 1858 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GPGG A A P G PG P G + P + AA + Sbjct: 1859 QQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA--AAAAG 1916 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502 R GG G G G G+ A A+ A PG GY P A A + PG Sbjct: 1917 RGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 1966 Score = 53.9 bits (128), Expect = 6e-06 Identities = 56/169 (33%), Positives = 66/169 (39%), Gaps = 3/169 (1%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFS 178 AAA+A R P GY PG++G Q+ PG + AA A R PGG + Sbjct: 1049 AAAAAAAGRGPG------GYGPGQQGPGQQGPGGSGAAAA--------AAGRGPGG--YG 1092 Query: 179 PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 P GPGG AA A PG PG+ G + P PG AA Sbjct: 1093 PGQQGPGG---------------PGAAAAAAGPGGYGPGQQRPG----QQGPGGPGAAAA 1133 Query: 359 SPRFG-GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 + G GG G G G G A A+ A PG GY P PG Sbjct: 1134 AAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQGPG 1180 Score = 53.9 bits (128), Expect = 6e-06 Identities = 53/156 (33%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFS 235 GY PG++G PG A AA + Y P + + PGG++ + A GPG + P Sbjct: 1336 GYGPGQQG---PGAAAAAAAGSGPGGYGPGQ-QGPGGSSAAAAAAGPGRYGP----GQQG 1387 Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------GPA 397 P ++A AAG + PG PG + P PG AA + G G GG GP Sbjct: 1388 PGAAAAAAAG-SGPGGYGPG---------QQGPGGPGAAAAAAAAGRGPGGYGPGQQGPG 1437 Query: 398 GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502 G A A A P PG G + A A S PG Sbjct: 1438 GPGAAAAAAGPG--GYGPGQQGPGAAAAAAAGSGPG 1471 [107][TOP] >UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans RepID=Q5KGG3_CRYNE Length = 1786 Score = 64.7 bits (156), Expect = 3e-09 Identities = 53/159 (33%), Positives = 67/159 (42%), Gaps = 33/159 (20%) Frame = +2 Query: 128 YAYSPARA-RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP--GR 298 Y SP +P G +SP+ P G+SP + A SP S A G +P GR Sbjct: 1533 YGQSPMHGGMSPAG--YSPS--SPAGYSPTSPFAVTSPAYSPTSPFAGAAAGAASPWVGR 1588 Query: 299 SPAGRFTPRMSPASPGYAAMSPRFGG-----------------GLGGGPAGG-AGAYAPA 424 G +P SP SP Y+ SP+F GG AG A Y+P Sbjct: 1589 GGYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPT 1648 Query: 425 SPAYMATSPGMG------------YSPSTPALAVSSPGY 505 SPAY TSP G YSP++PA + +SP Y Sbjct: 1649 SPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSY 1687 Score = 61.2 bits (147), Expect = 4e-08 Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205 A SPA + Y+P Q +P + +PTY SPA SPAY G G Sbjct: 1593 ATSPAYSPTSPQYSP-TSPQFSPTSPSFSPSSPTY--SPA----------SPAYGGAGAG 1639 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA--------AMS 361 + + + SP S G T + +P +P SP SP Y+ A S Sbjct: 1640 NRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATS 1699 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 PR+ + + Y+PASPAY TSP YSP++PA + +SP Y Sbjct: 1700 PRYSP-TSPQFSPTSPTYSPASPAYSPTSPQ--YSPTSPAYSPTSPAY 1744 Score = 56.6 bits (135), Expect = 9e-07 Identities = 55/164 (33%), Positives = 74/164 (45%), Gaps = 8/164 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAA-MTPTY-AYSPARARTPGGTAFSPAY--TGPG 199 SP+ S Y+P G A+ +PT AYSP +P G SP Y T P Sbjct: 1616 SPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSPT---SPMGGITSPQYSPTSPR 1672 Query: 200 GFSPINATASFSPIMSS----ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 +SP + +FSP S + A +AT R +P +P SPASP Y+ SP+ Sbjct: 1673 -YSP--TSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQ 1729 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 Y+P SPAY TSP YSP++PA ++P Sbjct: 1730 ---------------YSPTSPAYSPTSP--AYSPTSPAYGGAAP 1756 Score = 55.5 bits (132), Expect = 2e-06 Identities = 49/139 (35%), Positives = 59/139 (42%), Gaps = 18/139 (12%) Frame = +2 Query: 143 ARARTPGGTAFSPAYTGP--GGFSPINATASFSPIMSSADAAG----------RATPGRM 286 A TPGG P GG A+FSPI SSA+ G G M Sbjct: 1483 AGGMTPGGAMTPYDNLSPMWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSPMHGGM 1542 Query: 287 TPG----RSPAGRF-TPRMSPASPGYAAMSPRFGGGLG-GGPAGGAGAYAPASPAYMATS 448 +P SPAG T + SP Y+ SP G G P G G Y SPAY TS Sbjct: 1543 SPAGYSPSSPAGYSPTSPFAVTSPAYSPTSPFAGAAAGAASPWVGRGGYGATSPAYSPTS 1602 Query: 449 PGMGYSPSTPALAVSSPGY 505 P YSP++P + +SP + Sbjct: 1603 P--QYSPTSPQFSPTSPSF 1619 [108][TOP] >UniRef100_C6HNU4 DNA-directed RNA polymerase II n=1 Tax=Ajellomyces capsulatus H143 RepID=C6HNU4_AJECH Length = 668 Score = 64.7 bits (156), Expect = 3e-09 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205 G++P G R+PG + + +P+ YSP +PG + SP + GF Sbjct: 473 GFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 527 Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + A A SP S + + +P +P SP +P SP SP Y+ SP F Sbjct: 528 SPASPAFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 579 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505 PA + A++P SP+Y TSP +G SP++P +SPG+ Sbjct: 580 ---PA--SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGW 624 Score = 64.3 bits (155), Expect = 4e-09 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%) Frame = +2 Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274 G D A TP + SP + GT + P + A F+ S + G + Sbjct: 417 GLLSDGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSP 476 Query: 275 PGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFGGGLGGGPAGGAGAY 415 G +PG SP+ F +PR SP+S PG + SPRF G PA + A+ Sbjct: 477 HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPAF 534 Query: 416 APASPAYMATSPGMGYSPSTPALAVSSPGY 505 AP SPAY TSP SP++P+ + +SPG+ Sbjct: 535 APTSPAYSPTSPSYQQSPTSPSYSPTSPGF 564 Score = 61.6 bits (148), Expect = 3e-08 Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Frame = +2 Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151 D AA+ + SP P+ + ++P R+ G TP F ++ +SP A Sbjct: 421 DGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 479 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 R+PGG +SP+ SP N T+ SP S + +PG SP +P S Sbjct: 480 RSPGG-GYSPS-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 528 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 PASP +A SP AY+P SP+Y + YSP++P + +SP Y Sbjct: 529 PASPAFAPTSP---------------AYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSY 571 [109][TOP] >UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR RepID=C0NEY2_AJECG Length = 1234 Score = 64.7 bits (156), Expect = 3e-09 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205 G++P G R+PG + + +P+ YSP +PG + SP + GF Sbjct: 1039 GFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 1093 Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + A A SP S + + +P +P SP +P SP SP Y+ SP F Sbjct: 1094 SPASPAFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 1145 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505 PA + A++P SP+Y TSP +G SP++P +SPG+ Sbjct: 1146 ---PA--SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGW 1190 Score = 64.3 bits (155), Expect = 4e-09 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%) Frame = +2 Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274 G D A TP + SP + GT + P + A F+ S + G + Sbjct: 983 GLLSDGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSP 1042 Query: 275 PGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFGGGLGGGPAGGAGAY 415 G +PG SP+ F +PR SP+S PG + SPRF G PA + A+ Sbjct: 1043 HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPAF 1100 Query: 416 APASPAYMATSPGMGYSPSTPALAVSSPGY 505 AP SPAY TSP SP++P+ + +SPG+ Sbjct: 1101 APTSPAYSPTSPSYQQSPTSPSYSPTSPGF 1130 Score = 61.6 bits (148), Expect = 3e-08 Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Frame = +2 Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151 D AA+ + SP P+ + ++P R+ G TP F ++ +SP A Sbjct: 987 DGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 1045 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 R+PGG +SP+ SP N T+ SP S + +PG SP +P S Sbjct: 1046 RSPGG-GYSPS-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 1094 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 PASP +A SP AY+P SP+Y + YSP++P + +SP Y Sbjct: 1095 PASPAFAPTSP---------------AYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSY 1137 [110][TOP] >UniRef100_A6SI63 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6SI63_BOTFB Length = 1742 Score = 64.7 bits (156), Expect = 3e-09 Identities = 42/121 (34%), Positives = 60/121 (49%) Frame = +2 Query: 143 ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322 A +R+PGG +SP SP NA+ S SP S + T M G SP +P Sbjct: 1552 AGSRSPGG-GYSPT-------SPFNASPS-SPNFSPSSPGYSPTSPMMGGGASPGYAVSP 1602 Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 R SP SP + SP + + + +Y+P SP Y TSP + SP++P+ + +SP Sbjct: 1603 RFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNIHGSPTSPSYSPTSPS 1662 Query: 503 Y 505 Y Sbjct: 1663 Y 1663 Score = 59.7 bits (143), Expect = 1e-07 Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 14/172 (8%) Frame = +2 Query: 32 SPAMPESERGYTPGRE---GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202 SP S GY+P G +PG A +P SPA TP A+SP T P Sbjct: 1573 SPNFSPSSPGYSPTSPMMGGGASPGYAVSPRFSPV---SPAF--TPTSPAYSP--TSPSF 1625 Query: 203 FSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 SP + S+SP + G T P SP +P SP SP Y+ SP + G Sbjct: 1626 VSP--TSPSYSPTSPNYSPTSPNIHGSPTSPSYSPT---SPSYSPTSPNYSPTSPNYAGN 1680 Query: 380 L---GGGPAGGAGAYAPASPAYMATSP-------GMGYSPSTPALAVSSPGY 505 G G + + Y+P SP + +SP YSP++P+ + +SP + Sbjct: 1681 KVSPGSGLSPTSPVYSPTSPNWSPSSPQHQGNSTSPKYSPTSPSYSPTSPNF 1732 Score = 57.0 bits (136), Expect = 7e-07 Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 21/152 (13%) Frame = +2 Query: 113 AMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP 292 A TP SP GG +P Y FSPI + S +P + + +G G M+P Sbjct: 1498 AATPYDGQSPLNE---GGYLGTPDYGAQ--FSPIQSAGSDTPSGFATEYSGL---GGMSP 1549 Query: 293 ----GRSPAGRFTP----RMSPASPGYAAMSPRFGGG---LGGGPAGG----------AG 409 RSP G ++P SP+SP ++ SP + +GGG + G + Sbjct: 1550 YAAGSRSPGGGYSPTSPFNASPSSPNFSPSSPGYSPTSPMMGGGASPGYAVSPRFSPVSP 1609 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 A+ P SPAY TSP SP++P+ + +SP Y Sbjct: 1610 AFTPTSPAYSPTSPSF-VSPTSPSYSPTSPNY 1640 [111][TOP] >UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6QYA7_AJECN Length = 1747 Score = 64.7 bits (156), Expect = 3e-09 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205 G++P G R+PG + + +P+ YSP +PG + SP + GF Sbjct: 1552 GFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 1606 Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + A A SP S + + +P +P SP +P SP SP Y+ SP F Sbjct: 1607 SPASPAFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 1658 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505 PA + A++P SP+Y TSP +G SP++P +SPG+ Sbjct: 1659 ---PA--SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGW 1703 Score = 64.3 bits (155), Expect = 4e-09 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%) Frame = +2 Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274 G D A TP + SP + GT + P + A F+ S + G + Sbjct: 1496 GLLSDGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSP 1555 Query: 275 PGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFGGGLGGGPAGGAGAY 415 G +PG SP+ F +PR SP+S PG + SPRF G PA + A+ Sbjct: 1556 HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPAF 1613 Query: 416 APASPAYMATSPGMGYSPSTPALAVSSPGY 505 AP SPAY TSP SP++P+ + +SPG+ Sbjct: 1614 APTSPAYSPTSPSYQQSPTSPSYSPTSPGF 1643 Score = 61.6 bits (148), Expect = 3e-08 Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Frame = +2 Query: 2 DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151 D AA+ + SP P+ + ++P R+ G TP F ++ +SP A Sbjct: 1500 DGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 1558 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 R+PGG +SP+ SP N T+ SP S + +PG SP +P S Sbjct: 1559 RSPGG-GYSPS-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 1607 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 PASP +A SP AY+P SP+Y + YSP++P + +SP Y Sbjct: 1608 PASPAFAPTSP---------------AYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSY 1650 [112][TOP] >UniRef100_UPI00016DFC5B UPI00016DFC5B related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016DFC5B Length = 609 Score = 64.3 bits (155), Expect = 4e-09 Identities = 65/170 (38%), Positives = 74/170 (43%), Gaps = 11/170 (6%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205 ARSP P G G +PG A +P +AR+PGG SP PGG Sbjct: 10 ARSPGGPARSPG---GPARSPSPG---GLAQSPGGPSPGGQARSPGGLGRSPGGPSPGGP 63 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPG---RSPAGRFTPRMSPASPGYAAMSP---- 364 SP + S S GR+ PG +PG RSP G P SPG A SP Sbjct: 64 SPGGPSWSPGGPAQSPGGLGRS-PGGPSPGGQARSPGG---PSPGGPSPGGPARSPGGPA 119 Query: 365 RFGGGLG---GGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502 R GGLG GGPA G SP A SPG +G SP P+ SPG Sbjct: 120 RSPGGLGRSPGGPAQSPGGLG-RSPGGPAQSPGGLGRSPGGPSPGGPSPG 168 Score = 54.3 bits (129), Expect = 4e-06 Identities = 57/175 (32%), Positives = 67/175 (38%), Gaps = 9/175 (5%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 A + + RSP P S G +PG G A +P +PGG A SP Sbjct: 45 ARSPGGLGRSPGGP-SPGGPSPGGPSWSPGG----PAQSPGGLGRSPGGPSPGGQARSPG 99 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPG-RMTPG---RSPAGRFTPRMSPA----S 340 PGG SP S S GR+ G +PG RSP G P SP S Sbjct: 100 GPSPGGPSPGGPARSPGGPARSPGGLGRSPGGPAQSPGGLGRSPGG---PAQSPGGLGRS 156 Query: 341 PGYAAMS-PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 PG + P GG GGPA G +P PA P G +P SPG Sbjct: 157 PGGPSPGGPSPGGPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGPARSPG 211 [113][TOP] >UniRef100_Q206M1 Major ampullate spidroin 2 (Fragment) n=1 Tax=Latrodectus hesperus RepID=Q206M1_9ARAC Length = 1198 Score = 64.3 bits (155), Expect = 4e-09 Identities = 58/170 (34%), Positives = 70/170 (41%), Gaps = 4/170 (2%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 AA+A A P ++GY PG G A A AY P + G A + A Sbjct: 472 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GAAAAAAAG 527 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 +GP G+ P A A AA A G PGR A + P S A+ AA P Sbjct: 528 SGPSGYGPGAAGPG------GAGAAAAAAAGGAGPGRQQA--YGPGGSGAAAAAAAGGPG 579 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAVSSPGY 505 +GG G GP GGAGA A A+ GY P + A A PGY Sbjct: 580 YGGQQGYGP-GGAGAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 628 Score = 63.5 bits (153), Expect = 7e-09 Identities = 57/164 (34%), Positives = 66/164 (40%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A P GY PG G PG A AA A + A PGG P+ Sbjct: 118 AAAAAAAAAGPG----PSGYGPGTAGPSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 168 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GP G F P S A AA A G PGR + P S A+ AA P Sbjct: 169 GYGPSGSG---GQQGFGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 223 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 +GG G GP GGAGA A A+ Y P A ++ Sbjct: 224 GYGGQQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 266 Score = 61.6 bits (148), Expect = 3e-08 Identities = 62/167 (37%), Positives = 68/167 (40%), Gaps = 1/167 (0%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A P GY PG G PG A AA A + A PGG P+ Sbjct: 262 AAAAAATAAGPG----PSGYGPGAAGPSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 312 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GP G + P S A AA A G PGR S G AA P Sbjct: 313 GYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG------YGQGSSGAAAGGP 363 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502 +GG G GP GGAGA A+ A A PG GY P A S PG Sbjct: 364 GYGGQQGYGP-GGAGA---AAAAAAAAGPGPSGYGPG--AAGSSGPG 404 Score = 61.2 bits (147), Expect = 4e-08 Identities = 59/160 (36%), Positives = 69/160 (43%), Gaps = 1/160 (0%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205 AR A P ++GY PG G A AA Y + PGG A + A GG Sbjct: 1 ARGGAGPGRQQGYGPGSSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAAVAAAGGA 53 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 P ++ P S A AA A G PGR + P S A+ AA P +GG G Sbjct: 54 GP-GTQQAYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGQQG 110 Query: 386 GGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502 GP GGAGA A+ A A PG GY P T S PG Sbjct: 111 YGP-GGAGA---AAAAAAAAGPGPSGYGPGT--AGPSGPG 144 Score = 60.5 bits (145), Expect = 6e-08 Identities = 56/166 (33%), Positives = 66/166 (39%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A P GY PG G PG A AA A + A PGG P+ Sbjct: 760 AAAAAATAAGPG----PSGYGPGAAGPSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 810 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GP G + P S A AA A G PGR + S A+ AA P Sbjct: 811 GYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGQGSSGAAAAAAAGGP 865 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 +GG G GP GGAGA A A+ Y P A ++ G Sbjct: 866 GYGGQQGFGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAAAG 910 Score = 58.5 bits (140), Expect = 2e-07 Identities = 56/183 (30%), Positives = 72/183 (39%), Gaps = 19/183 (10%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRT----------------PGRAFDAAMTPTYAY 136 A A+A A A P ++GY PG G PG A AA Sbjct: 591 AGAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGYGDQQGYGPGGAGAAAAAAAAGP 650 Query: 137 SPARARTPGGT---AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPA 307 +A PGG+ A + A +GP G+ P A ++A AAG A PGR Sbjct: 651 GRQQAYGPGGSGAAAAAAAGSGPSGYGP-GAAGPGGAAAAAAAAAGGAGPGRQQA----- 704 Query: 308 GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487 + P S A+ AA P +GG G GP GGAGA A A+ Y P A Sbjct: 705 --YGPGGSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAA 761 Query: 488 VSS 496 ++ Sbjct: 762 AAA 764 Score = 57.4 bits (137), Expect = 5e-07 Identities = 55/164 (33%), Positives = 65/164 (39%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 AAA+A A P GY PG G PG A AA A + A PGG P+ Sbjct: 378 AAAAAAAAAGPG----PSGYGPGAAGSSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 428 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 GP G + P S A AA A G PGR + P A+ AA P Sbjct: 429 VYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGP--GGAAAAAAAGGP 481 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 +GG G GP GGAGA A A+ Y P A ++ Sbjct: 482 GYGGQQGYGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAA 524 [114][TOP] >UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 10 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1F Length = 1840 Score = 63.9 bits (154), Expect = 6e-09 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 1/150 (0%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS-FS 235 GY+P TPG + Y SP +P A+ P PGG++P + + S S Sbjct: 1497 GYSPA--WSPTPGSPGSPGPSSPYIPSPGELYSPTSPAYEPR--SPGGYTPQSPSYSPTS 1552 Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY 415 P S + T +P +P SP SP Y+ SP + + + +Y Sbjct: 1553 PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSY 1604 Query: 416 APASPAYMATSPGMGYSPSTPALAVSSPGY 505 +P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1605 SPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1632 Score = 54.3 bits (129), Expect = 4e-06 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1594 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1649 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P R +P SP SP Y+ SP+ Sbjct: 1650 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPK 1708 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P+SP Y TSP YSP++P + +SP Y Sbjct: 1709 Y--------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1744 [115][TOP] >UniRef100_UPI00016DFC5C UPI00016DFC5C related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016DFC5C Length = 579 Score = 63.9 bits (154), Expect = 6e-09 Identities = 64/170 (37%), Positives = 73/170 (42%), Gaps = 11/170 (6%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205 ARSP P +PG G +PG +AR+PGG SP PGG Sbjct: 10 ARSPGGPAR----SPGSPGGPSPG---------------GQARSPGGLGRSPGGPSPGGP 50 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPG---RSPAGRFTPRMSPASPGYAAMSP---- 364 SP + S S GR+ PG +PG RSP G P SPG A SP Sbjct: 51 SPGGPSWSPGGPAQSPGGLGRS-PGGPSPGGQARSPGG---PSPGGPSPGGPARSPGGPA 106 Query: 365 RFGGGLG---GGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502 R GGLG GGPA G SP A SPG +G SP P+ SPG Sbjct: 107 RSPGGLGRSPGGPAQSPGGLG-RSPGGPAQSPGGLGRSPGGPSPGGPSPG 155 Score = 54.3 bits (129), Expect = 4e-06 Identities = 57/175 (32%), Positives = 67/175 (38%), Gaps = 9/175 (5%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 A + + RSP P S G +PG G A +P +PGG A SP Sbjct: 32 ARSPGGLGRSPGGP-SPGGPSPGGPSWSPGG----PAQSPGGLGRSPGGPSPGGQARSPG 86 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPG-RMTPG---RSPAGRFTPRMSPA----S 340 PGG SP S S GR+ G +PG RSP G P SP S Sbjct: 87 GPSPGGPSPGGPARSPGGPARSPGGLGRSPGGPAQSPGGLGRSPGG---PAQSPGGLGRS 143 Query: 341 PGYAAMS-PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 PG + P GG GGPA G +P PA P G +P SPG Sbjct: 144 PGGPSPGGPSPGGPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGPARSPG 198 [116][TOP] >UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi RepID=Q8MX30_NAEGR Length = 1590 Score = 63.9 bits (154), Expect = 6e-09 Identities = 43/117 (36%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Frame = +2 Query: 149 ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGR------ATPGRMTPGRSPAG 310 A TP G SP Y G GFSP ++FSP+ SS + G ++PG +P Sbjct: 1491 AMTPLGRTPSPEYQG--GFSPSPYNSAFSPVASSPTSPGHQGGYSPSSPGNYSPTSPAYS 1548 Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA 481 +P SP SP Y+ SP Y+P SPAY TSP YSP++PA Sbjct: 1549 PSSPNYSPTSPAYSPTSPN---------------YSPTSPAYSPTSP--NYSPTSPA 1588 Score = 53.9 bits (128), Expect = 6e-06 Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Frame = +2 Query: 272 TPGRMTP-GRSPAGRFTPRMSPASPGYA----AMSPRFGGGLGGGPAGGAGAYAPASPAY 436 T G MTP GR+P+ + SP+ A A SP G GG G Y+P SPAY Sbjct: 1488 TQGAMTPLGRTPSPEYQGGFSPSPYNSAFSPVASSPTSPGHQGGYSPSSPGNYSPTSPAY 1547 Query: 437 MATSPGMGYSPSTPALAVSSPGY 505 +SP YSP++PA + +SP Y Sbjct: 1548 SPSSP--NYSPTSPAYSPTSPNY 1568 [117][TOP] >UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H9U6_PENCW Length = 1733 Score = 63.9 bits (154), Expect = 6e-09 Identities = 52/189 (27%), Positives = 76/189 (40%), Gaps = 35/189 (18%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA- 220 P + Y G + T PT + +A T FSPA PGG+SP + Sbjct: 1507 PMASSPYMAGGDPNSTFSPMHQIGQEPTGGLTEYQATTSTFGGFSPAARSPGGYSPTSPF 1566 Query: 221 -TASFSPIMSSADAAGRATPG---RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388 T+ SP S + + +PG +PG SPA +P P SP Y+ SP +G Sbjct: 1567 NTSPTSPGYSPSSSYSPTSPGIGMMTSPGFSPA---SPTFQPTSPAYSPTSPAYGQASPT 1623 Query: 389 GPA-----------------------GGAGAYAPASPAYMATSPGMG-------YSPSTP 478 P+ + A++P SP+Y TSP +G SP++P Sbjct: 1624 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGARHLSPTSPTSP 1683 Query: 479 ALAVSSPGY 505 +SPG+ Sbjct: 1684 KYTPTSPGW 1692 [118][TOP] >UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48673 Length = 1880 Score = 63.5 bits (153), Expect = 7e-09 Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 11/178 (6%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPG-GTAFS 178 A S + SP M +G TP +P + MTP +SPA + + G A+S Sbjct: 1496 AMGSPSQSMSPQMTPWNQGATPMHGASWSP--MMGSGMTPGGPGFSPANSESTGFSPAYS 1553 Query: 179 PAYT----GPG----GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 PA++ PG G+SP + + S SP S A + T +P +P S Sbjct: 1554 PAWSPQPQSPGSPSPGYSPTSPSYSPTSPGYSPASPSYSPTSPSYSPTSPSYSPTSPSYS 1613 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SP Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1614 PTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1661 Score = 58.5 bits (140), Expect = 2e-07 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ S Y+P ++ + +P+Y+ YSP+ + +P ++SP T Sbjct: 1714 SPSYSPSSPKYSPTSPSYSPTSPSY-SPQSPSYSPGSPSYSPSSPKYSPTSPSYSP--TS 1770 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + S SP S A + T + +P +P SP SP Y+ SP + Sbjct: 1771 PS-YSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY 1829 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505 + + Y+P+SP Y TSP G YSP++P+ + +SP Y Sbjct: 1830 --------SPTSPKYSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSY 1867 Score = 54.3 bits (129), Expect = 4e-06 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 14/172 (8%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1685 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1686 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPS 1744 Query: 368 FGGGLGGGPAGG------AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + G + +Y+P SP+Y TSP +SPS+P + +SP Y Sbjct: 1745 YSPGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSP--NFSPSSPTYSPASPSY 1794 Score = 53.9 bits (128), Expect = 6e-06 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193 SP+ Y+PG +P + +P+Y+ YSP +P +SPA Sbjct: 1735 SPSYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPS 1793 Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 SP + +S P S T + +P +P+ SP+SP Y+ SP+ Sbjct: 1794 YSPTSPKYSPSS--PKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSPTSPK-- 1849 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMG 460 G + + +Y+P SP+Y TSPGMG Sbjct: 1850 ---GSTYSPTSPSYSPTSPSYSPTSPGMG 1875 Score = 53.5 bits (127), Expect = 8e-06 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 6/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205 SP+ + Y+P + +PG + +P Y SP +P + SP+Y T P F Sbjct: 1728 SPSYSPTSPSYSP-QSPSYSPGSPSYSPSSPKY--SPT---SPSYSPTSPSYSPTSPN-F 1780 Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + T S SP S + + +P +P+ SPASP Y+ SP++ Sbjct: 1781 SPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKY---- 1836 Query: 383 GGGPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSPG 502 + + Y+P SP Y TSP YSP++P+ + +SPG Sbjct: 1837 ----SPSSPTYSPTSPKGSTYSPTSPS--YSPTSPSYSPTSPG 1873 [119][TOP] >UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa RepID=Q7SDN0_NEUCR Length = 1752 Score = 63.5 bits (153), Expect = 7e-09 Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 28/175 (16%) Frame = +2 Query: 65 TPGREGQRTPGRAFDAAMTPTYA-YSP---ARARTPGGTAFSPAYTGPGGF--------- 205 TP G F + +PT +SP A + +P F Y G GG+ Sbjct: 1506 TPYDTGSPMADSGFLGSYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVGGYGSGTSYSSA 1565 Query: 206 -SPINATASFSPIMSSADAAGRATPGRMTPGRSP-------AGRF--TPRMSPASPGYAA 355 SP AT+ F+P +S + G +P G SP AGRF +P+ SP+SP ++ Sbjct: 1566 TSP-RATSPFTP--TSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPSFSP 1622 Query: 356 MSPRFGGGLGGGPAGG--AGAYAPASPA---YMATSPGMGYSPSTPALAVSSPGY 505 SP G P+ + +Y+PASPA Y TSP +SP++P+ + +SP Y Sbjct: 1623 TSPMLRPGSPTSPSYSPTSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSY 1677 Score = 59.7 bits (143), Expect = 1e-07 Identities = 48/140 (34%), Positives = 60/140 (42%), Gaps = 23/140 (16%) Frame = +2 Query: 155 TPGGTAFSPAYTGP---------GGFSPINATASFSPIMSSADAAGRATPGRM----TPG 295 T +A SP T P GG+SP + A +SP D+AGR +P Sbjct: 1560 TSYSSATSPRATSPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPS 1619 Query: 296 RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA-YAPASPA---------YMAT 445 SP SP SP Y+ SP + PA A A Y+P SPA Y T Sbjct: 1620 FSPTSPMLRPGSPTSPSYSPTSPSYS------PASPAAARYSPTSPAQQFSPTSPSYSPT 1673 Query: 446 SPGMGYSPSTPALAVSSPGY 505 SP YSP++PA +SP Y Sbjct: 1674 SP--SYSPASPAFQATSPSY 1691 Score = 54.3 bits (129), Expect = 4e-06 Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 11/168 (6%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGR-AFDAAMTPTY-AYSPARARTPGGTAFSPAYTGPGGF 205 SP+ P + GY+P + GR A +P+ ++SP G+ SP+Y Sbjct: 1586 SPSSPAA--GYSPSSPLLDSAGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSY------ 1637 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGL 382 SP + S+SP +A +P + SP+ T P SPASP + A SP + Sbjct: 1638 SP--TSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPASPAFQATSPSYSPAS 1695 Query: 383 GGGPAGGAGAYAPASPAYMATSPGM--------GYSPSTPALAVSSPG 502 AY+P SP++ SPG GYSP++P + +PG Sbjct: 1696 PTWSPTSPDAYSPTSPSFQR-SPGQQLSPTSPTGYSPTSPQYSPRTPG 1742 [120][TOP] >UniRef100_A7EKT1 DNA-directed RNA polymerase n=2 Tax=Sclerotinia sclerotiorum RepID=A7EKT1_SCLS1 Length = 1746 Score = 63.5 bits (153), Expect = 7e-09 Identities = 41/121 (33%), Positives = 60/121 (49%) Frame = +2 Query: 143 ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322 A +R+PGG +SP SP NA+ + SP S + T M G SP +P Sbjct: 1556 AGSRSPGG-GYSPT-------SPFNASPT-SPQFSPSSPGYSPTSPMMGGGASPGYSVSP 1606 Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 R SP SP + SP + + + +Y+P SP Y TSP + SP++P+ + +SP Sbjct: 1607 RFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNIHGSPTSPSYSPTSPS 1666 Query: 503 Y 505 Y Sbjct: 1667 Y 1667 Score = 58.9 bits (141), Expect = 2e-07 Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 14/172 (8%) Frame = +2 Query: 32 SPAMPESERGYTPGRE---GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202 SP S GY+P G +PG + +P SPA TP A+SP T P Sbjct: 1577 SPQFSPSSPGYSPTSPMMGGGASPGYSVSPRFSPV---SPAF--TPTSPAYSP--TSPSF 1629 Query: 203 FSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 SP + S+SP + G T P SP +P SP SP Y+ SP + G Sbjct: 1630 VSP--TSPSYSPTSPNYSPTSPNIHGSPTSPSYSPT---SPSYSPTSPNYSPTSPNYAGN 1684 Query: 380 L---GGGPAGGAGAYAPASPAYMATSP-------GMGYSPSTPALAVSSPGY 505 G G + + Y+P SP + +SP YSP++P+ + +SP + Sbjct: 1685 KVSPGSGLSPTSPVYSPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTSPNF 1736 [121][TOP] >UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni RepID=B4NDK9_DROWI Length = 1890 Score = 63.2 bits (152), Expect = 1e-08 Identities = 55/154 (35%), Positives = 74/154 (48%), Gaps = 5/154 (3%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSP---ARARTPGGTAFSP-AYTGPGGFSPINATA 226 G TP TP + TP Y +SP A + TPGG +FSP A + G SP Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRY-FSPQGHASSMTPGGPSFSPAAASDASGMSP----- 1547 Query: 227 SFSPIMSSADAAGRATPG-RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 S+SP + + ++PG M+P + +P SP SP Y A SP GG + Sbjct: 1548 SWSP---AHPGSSPSSPGPSMSPYFPTSPSVSPSYSPTSPNYTASSP--SGGASPNYSPS 1602 Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + Y+P SP Y ATSP Y+ +TP + S GY Sbjct: 1603 SPNYSPTSPLYAATSP--RYASTTPNFNLQSTGY 1634 Score = 56.2 bits (134), Expect = 1e-06 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 8/140 (5%) Frame = +2 Query: 110 AAMTPTY-AYSPARARTPGGTA--FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPG 280 ++MTP ++SPA A G + +SPA+ G SP + + + P S + T Sbjct: 1525 SSMTPGGPSFSPAAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPTSPSVSPSYSPTSP 1584 Query: 281 RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM- 457 T SP+G +P SP+SP Y+ SP YA SP Y +T+P Sbjct: 1585 NYTAS-SPSGGASPNYSPSSPNYSPTSP---------------LYAATSPRYASTTPNFN 1628 Query: 458 ----GYSPSTPALAVSSPGY 505 GYSPS+ + +SP Y Sbjct: 1629 LQSTGYSPSSSGYSPTSPVY 1648 Score = 54.7 bits (130), Expect = 3e-06 Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151 AA S R A + P GY+P G + +P++A YSP A Sbjct: 1614 AATSPRYASTTPNFNLQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNA 1673 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325 +P + ++P +SP + S+SP S+ + +P +P SP +P Sbjct: 1674 YSPSSSNYTP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1722 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490 +P +P Y+ SP + PA A + Y+P SP Y SP SP +P Sbjct: 1723 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1782 Query: 491 SSPGY 505 SP Y Sbjct: 1783 GSPQY 1787 [122][TOP] >UniRef100_A7AWJ0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AWJ0_BABBO Length = 1746 Score = 63.2 bits (152), Expect = 1e-08 Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 2/132 (1%) Frame = +2 Query: 116 MTPTY-AYSPAR-ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT 289 M+PT YSP G +SPA SP+ + S P+ S A T + Sbjct: 1581 MSPTSPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTS--PVYSPTSPAYSPTSPAYS 1638 Query: 290 PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469 P +P SP SP Y+ SP + + + AY+P SPAY TSP +GY P Sbjct: 1639 PTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSPNLGYLP 1690 Query: 470 STPALAVSSPGY 505 ++PA +SP Y Sbjct: 1691 TSPAYRPTSPAY 1702 Score = 57.0 bits (136), Expect = 7e-07 Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 14/156 (8%) Frame = +2 Query: 80 GQRTPGRAFDAAMTPTYA-----YSPAR-ARTPGGTAFSPAY-----TGPGGFSPIN-AT 223 G +P + +P Y YSPA A +P +SP T P +SP + A Sbjct: 1579 GMMSPTSPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTSPVYSPTSPA-YSPTSPAY 1637 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA-- 397 + SP S A T +P +P SP SP Y+ SP G L PA Sbjct: 1638 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNLGY-LPTSPAYR 1696 Query: 398 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + AY+P SPAY TSP YSP++P + +SP Y Sbjct: 1697 PTSPAYSPTSPAYSPTSP--AYSPTSPVYSPTSPEY 1730 [123][TOP] >UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480 RepID=C5FCL2_NANOT Length = 1748 Score = 63.2 bits (152), Expect = 1e-08 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 10/178 (5%) Frame = +2 Query: 2 DAAASARIARSP-------AMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARART 157 D AA+ + SP + P+ + ++P R+ F P+Y +SP R+ Sbjct: 1501 DGAATQYDSGSPMQENMYISSPDPDSQFSPVRQAGSENAVGFADYQPPSYGGFSPHEPRS 1560 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337 PGG +SP+ SP N + + +P SP+ + SP Sbjct: 1561 PGG-GYSPS-------SPFNTSPT-------------------SPAYSPSSGY----SPT 1589 Query: 338 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG--YSPSTPALAVSSPGY 505 SPG + SPRF PA + ++AP SPAY TSPG G SP++P+ + +SPG+ Sbjct: 1590 SPGMSITSPRFISSPAFSPA--SPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGF 1645 Score = 59.3 bits (142), Expect = 1e-07 Identities = 56/173 (32%), Positives = 75/173 (43%), Gaps = 11/173 (6%) Frame = +2 Query: 14 SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187 S R SPA + + P + A +PT +YSP +PG + SP+Y Sbjct: 1597 SPRFISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1653 Query: 188 -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGR--SPAGRFTPRMSPASPGYAAM 358 T P FSP A+ FSP S A G GR SP +P+ +P SPG++ Sbjct: 1654 PTSPS-FSP--ASPVFSPTSPSYSPTSPALGGT---GRHLSPTSPTSPKYTPTSPGWSPT 1707 Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPG----MGYSPSTPALAVSSP 499 SP AY+P SP + TSPG GYSP++P +SP Sbjct: 1708 SPE--------------AYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPTSP 1746 Score = 54.3 bits (129), Expect = 4e-06 Identities = 59/193 (30%), Positives = 77/193 (39%), Gaps = 35/193 (18%) Frame = +2 Query: 32 SPAMPESERG-YTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFS 208 SP P S G Y+P +P A +P+ YSP +PG + SP + FS Sbjct: 1554 SPHEPRSPGGGYSPSSPFNTSPT---SPAYSPSSGYSPT---SPGMSITSPRFISSPAFS 1607 Query: 209 PINATASFSPIMSSADAAGRATPGR-------------MTPGRSPAGRF----------- 316 P A+ SF+P ++ A +PG +PG SP Sbjct: 1608 P--ASPSFAP---TSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPA 1662 Query: 317 TPRMSPASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASP--------AYMATSPGMGYS 466 +P SP SP Y+ SP GG G P Y P SP AY TSP S Sbjct: 1663 SPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFSGS 1722 Query: 467 PSTPALAVSSPGY 505 P++P +SPGY Sbjct: 1723 PTSPG-GPTSPGY 1734 [124][TOP] >UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris RepID=UPI00005A0B1D Length = 1764 Score = 62.4 bits (150), Expect = 2e-08 Identities = 44/137 (32%), Positives = 64/137 (46%) Frame = +2 Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274 G F +A +P SPA TP +PAY G +SP A ++ A + Sbjct: 1525 GMFFGSAPSPMGGISPAM--TPWNQGATPAY---GAWSPSVGGAMSPSYSPTSPAYEPRS 1579 Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454 PG TP +P SP SP Y+ SP + + + +Y+P SP+Y TSP Sbjct: 1580 PGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTSPSYSPTSPSYSPTSP- 1630 Query: 455 MGYSPSTPALAVSSPGY 505 YSP++P+ + +SP Y Sbjct: 1631 -SYSPTSPSYSPTSPSY 1646 Score = 53.9 bits (128), Expect = 6e-06 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178 A SP+ + Y P G TP + +P+Y+ YSP +P + S Sbjct: 1563 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1622 Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 P+Y T P +SP + + S SP S + T +P +P SP SP Y Sbjct: 1623 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1681 Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475 + SP + + + +Y+P SP+Y TSP YSP++ Sbjct: 1682 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1741 Query: 476 PALAVSSPGY 505 P+ + +SP Y Sbjct: 1742 PSYSPTSPNY 1751 [125][TOP] >UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum RepID=Q2HDK0_CHAGB Length = 1756 Score = 62.4 bits (150), Expect = 2e-08 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 6/143 (4%) Frame = +2 Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274 G F ++ YA SP RA +P T+ + ++ GG+SP + A +SP DA GR Sbjct: 1546 GGGFGSSTVNPYATSP-RATSPFSTSPTSPFSYGGGYSP-TSPAGYSPTSPLLDAGGRYA 1603 Query: 275 PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP--AGGAGAYAPASPA----Y 436 +P+ SP+SP ++ SP G P + + +Y+PASPA Y Sbjct: 1604 S-------------SPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSYSPASPAATRHY 1650 Query: 437 MATSPGMGYSPSTPALAVSSPGY 505 TSP SP++P+ + +SP Y Sbjct: 1651 SPTSPQQFNSPTSPSYSPTSPSY 1673 [126][TOP] >UniRef100_C4Y5N3 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y5N3_CLAL4 Length = 281 Score = 62.4 bits (150), Expect = 2e-08 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP P S G +P G +PG +PTY+ YSP +P + SP+Y T Sbjct: 54 SPTSPFSYGGASPAFGGATSPGYG---GTSPTYSPTSPSYSPT---SPSYSPTSPSYSPT 107 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 108 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 166 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 167 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 202 Score = 53.9 bits (128), Expect = 6e-06 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 87 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 142 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 143 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 201 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 202 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 237 [127][TOP] >UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q5I6_MALGO Length = 1607 Score = 62.4 bits (150), Expect = 2e-08 Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 6/138 (4%) Frame = +2 Query: 110 AAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRATPGRM 286 AA + AYSP R G A SP+Y SP + + S SP++ +++A T RM Sbjct: 1380 AAGATSPAYSPTSPRIFAG-ATSPSY------SPTSPSYSPSSPVIDASNARSTYT-SRM 1431 Query: 287 TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG---GAGA--YAPASPAYMATSP 451 +P +P SP SP Y+ SP++ GP G GA Y+P SP Y TSP Sbjct: 1432 SPASPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPTSPQYSPTSP 1491 Query: 452 GMGYSPSTPALAVSSPGY 505 YSP++P + +SP Y Sbjct: 1492 --QYSPTSPQYSPTSPQY 1507 Score = 54.7 bits (130), Expect = 3e-06 Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 17/134 (12%) Frame = +2 Query: 149 ARTPGGTAFSPAYTGPGGFSP---INATASFSPIMS---SADAAGRATPGRMTPGRSPAG 310 ARTPGG +P +G + ASFSP++ G +P R+P G Sbjct: 1285 ARTPGG--MTPYDSGSPNIDDDFRVQQQASFSPLVQVGGDEGGYGEYLSAGQSPMRTPLG 1342 Query: 311 RFTPR--MSPASPGYAAMSPRFGG---GLGG-----GPAGGAG-AYAPASPAYMATSPGM 457 +P +P SPGY SP + LG G AG AY+P SP A + Sbjct: 1343 AQSPGYGFAPTSPGYVPTSPAYNATSPALGAMSPWVGAAGATSPAYSPTSPRIFAGATSP 1402 Query: 458 GYSPSTPALAVSSP 499 YSP++P+ + SSP Sbjct: 1403 SYSPTSPSYSPSSP 1416 [128][TOP] >UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae RepID=Q84KP6_CYAME Length = 1819 Score = 62.0 bits (149), Expect = 2e-08 Identities = 56/178 (31%), Positives = 74/178 (41%), Gaps = 34/178 (19%) Frame = +2 Query: 62 YTPGREGQRTPGRAFDA----------------AMTPTYAYSPARARTPGGTAFSPAYT- 190 YTPG TPG A D + +P +SPA + GG A A Sbjct: 1539 YTPGA----TPGMASDGFAAPWTPSLNLASPYGSFSPAVGFSPATSTYVGGDAMKDAGRY 1594 Query: 191 GPGGFSPI---NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM--------SPA 337 G GG SP +A+A+ S G T G +P +PR+ SP Sbjct: 1595 GLGGTSPFASFSASATTPNWAPSPAGGGTGTLGAFSPSSPAYSPTSPRLVSPTSPAYSPT 1654 Query: 338 SPGYAAMSPRFGGGLGG----GPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVS 493 SP Y+ SP + PA + AY+P SPAY +SP + YSPS+P +A S Sbjct: 1655 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSPNVAYS 1712 Score = 54.3 bits (129), Expect = 4e-06 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 9/167 (5%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211 SPA + Y+P A+ SPA + + A+SP+ +SP Sbjct: 1655 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSPNVA-YSP 1713 Query: 212 INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM-----SPASPG--YAAMSPRF 370 + ++SP + A ++P SP ++P SP+SP Y+ SP Sbjct: 1714 SSPNVAYSPSSPNV-AYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPN- 1771 Query: 371 GGGLGGGPAGGAGAYAPASP--AYMATSPGMGYSPSTPALAVSSPGY 505 + P+ AY+P+SP AY +SP + YSPS+PA + SSP Y Sbjct: 1772 ---VAYSPSSPV-AYSPSSPNVAYSPSSPNVAYSPSSPAFSPSSPVY 1814 [129][TOP] >UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis thaliana RepID=RPB1_ARATH Length = 1840 Score = 62.0 bits (149), Expect = 2e-08 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP + Y+P G A+ +P+Y+ YSP +P + SP+Y T Sbjct: 1570 SPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1625 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S A T +P +P SP SP Y+ SP Sbjct: 1626 SPS-YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1684 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SPAY TSP GYSP++P+ + +SP Y Sbjct: 1685 Y--------SPTSPSYSPTSPAYSPTSP--GYSPTSPSYSPTSPSY 1720 Score = 57.8 bits (138), Expect = 4e-07 Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 11/169 (6%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193 SP+ + Y+P A+ A +PT AYSP +P + SP+Y T Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT---SPSYSPTSPSYSPTS 1675 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + S SP S A T +P +P P SP Y S ++ Sbjct: 1676 PS-YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKY 1734 Query: 371 GGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + P+ A Y+P SP Y TSP YSP++P+ + SSP Y Sbjct: 1735 SPSIAYSPSNARLSPASPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 1781 Score = 54.7 bits (130), Expect = 3e-06 Identities = 45/155 (29%), Positives = 57/155 (36%), Gaps = 7/155 (4%) Frame = +2 Query: 62 YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220 Y G E TP R+ + M+P Y SP +P A Y G FSP ++ Sbjct: 1483 YMDGLEFGMTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSS 1542 Query: 221 TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 400 P SP+SPGY+ SP Sbjct: 1543 ---------------------------------PGYSPSSPGYSPTSP------------ 1557 Query: 401 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSPG YSP++P + SSPGY Sbjct: 1558 ---GYSPTSPGYSPTSPG--YSPTSPTYSPSSPGY 1587 Score = 54.3 bits (129), Expect = 4e-06 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 15/172 (8%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAYT-- 190 SP+ + Y+P ++ +P+Y AYSP +PG + SP+Y+ Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 1716 Query: 191 ----GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 GP S +A +SP ++ + + R +P SP +P SP SP Y+ Sbjct: 1717 SPSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPA------SPYSPTSPNYSPTSPSYSPT 1770 Query: 359 SPRFGGGLGGGPAGGAGAYAPASP----AYMATSPGMGYSPSTPALAVSSPG 502 SP + + + Y+P+SP A SP GYSP+ P + SS G Sbjct: 1771 SPSY--------SPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGYSPSSTG 1814 [130][TOP] >UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS Length = 1811 Score = 61.6 bits (148), Expect = 3e-08 Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151 AAAS R A + P GY+P G + +P++A YSP A Sbjct: 1535 AAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1594 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325 +P T +SP +SP + S+SP S+ + +P +P SP +P Sbjct: 1595 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1643 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490 +PA+P Y+ SP + PA A Y+P SP Y SP SP +P Sbjct: 1644 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1703 Query: 491 SSPGY 505 SP Y Sbjct: 1704 GSPQY 1708 Score = 57.0 bits (136), Expect = 7e-07 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1419 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1470 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1471 WSP------AHPGSSPSSPAPSMSP---YYPASPSVSPSYSPTSPNY---TASSPGGASP 1518 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP Y+ ++P A ++P + Sbjct: 1519 NYSPSSPNYSPTSP--LYAAASPRYASTTPNF 1548 Score = 56.2 bits (134), Expect = 1e-06 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205 SP+ + YTP TP+Y+ SP + +P + SPAY+ G + Sbjct: 1634 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1678 Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+ Sbjct: 1679 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1733 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505 P G Y+ SP Y SP M YSPS+ + +SP Y Sbjct: 1734 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1770 [131][TOP] >UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q29IN2_DROPS Length = 1889 Score = 61.6 bits (148), Expect = 3e-08 Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151 AAAS R A + P GY+P G + +P++A YSP A Sbjct: 1613 AAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1672 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325 +P T +SP +SP + S+SP S+ + +P +P SP +P Sbjct: 1673 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490 +PA+P Y+ SP + PA A Y+P SP Y SP SP +P Sbjct: 1722 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781 Query: 491 SSPGY 505 SP Y Sbjct: 1782 GSPQY 1786 Score = 57.0 bits (136), Expect = 7e-07 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---YYPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP Y+ ++P A ++P + Sbjct: 1597 NYSPSSPNYSPTSP--LYAAASPRYASTTPNF 1626 Score = 56.2 bits (134), Expect = 1e-06 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205 SP+ + YTP TP+Y+ SP + +P + SPAY+ G + Sbjct: 1712 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756 Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+ Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505 P G Y+ SP Y SP M YSPS+ + +SP Y Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848 [132][TOP] >UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis RepID=B4H2R8_DROPE Length = 1804 Score = 61.6 bits (148), Expect = 3e-08 Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151 AAAS R A + P GY+P G + +P++A YSP A Sbjct: 1547 AAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1606 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325 +P T +SP +SP + S+SP S+ + +P +P SP +P Sbjct: 1607 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1655 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490 +PA+P Y+ SP + PA A Y+P SP Y SP SP +P Sbjct: 1656 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1715 Query: 491 SSPGY 505 SP Y Sbjct: 1716 GSPQY 1720 Score = 56.2 bits (134), Expect = 1e-06 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205 SP+ + YTP TP+Y+ SP + +P + SPAY+ G + Sbjct: 1646 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1690 Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+ Sbjct: 1691 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1745 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505 P G Y+ SP Y SP M YSPS+ + +SP Y Sbjct: 1746 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1782 [133][TOP] >UniRef100_C2AIT9 Putative uncharacterized protein n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AIT9_TSUPA Length = 623 Score = 61.2 bits (147), Expect = 4e-08 Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 7/151 (4%) Frame = +2 Query: 65 TPGREGQRT-----PGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229 TPG + QR+ P AA A + A AR G A + A T G + A A Sbjct: 465 TPGADTQRSTSTGSPAPVVSAAAARGPALTGAVARADSGRAGAEALTTDGAAT---AAAV 521 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +P +S+ D A +TP R TPGR+ R TP + A P ++ + P+GG G Sbjct: 522 PTPSVSAPDDAAASTPERATPGRTTPERSTPADTIARPSDSSATTGSNADSPQSPSGGTG 581 Query: 410 --AYAPASPAYMATSPGMGYSPSTPALAVSS 496 + A +SP+ S G G SP++ A SS Sbjct: 582 VTSSAASSPSGTGESAGSGASPASTGSAASS 612 [134][TOP] >UniRef100_C5LSN8 P35 antigen, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSN8_9ALVE Length = 170 Score = 61.2 bits (147), Expect = 4e-08 Identities = 56/161 (34%), Positives = 76/161 (47%), Gaps = 3/161 (1%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAFSPAYTGPGGF 205 SPA + Y+P A+ +PT AYSP A +P A+SP T P + Sbjct: 5 SPAYSPTSPAYSPTSPAYSPTSPAY----SPTSPAYSPTSPAYSPTSPAYSP--TSPA-Y 57 Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + A + SP S A T +P SP +P SP SP Y+ SP + Sbjct: 58 SPTSPAYSPTSPAYSPTSPAYSPT----SPAYSPT---SPAYSPTSPAYSPTSPSY---- 106 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + AY+P SPAY TSP YSP++PA + +SP Y Sbjct: 107 ----SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 141 Score = 55.1 bits (131), Expect = 3e-06 Identities = 47/126 (37%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Frame = +2 Query: 134 YSPAR-ARTPGGTAFSPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPA 307 YSP A +P A+SP T P +SP + A + SP S A T +P SP Sbjct: 1 YSPTSPAYSPTSPAYSP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPT----SPAYSPT 53 Query: 308 GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487 +P SP SP Y+ SP AY+P SPAY TSP YSP++PA + Sbjct: 54 ---SPAYSPTSPAYSPTSP---------------AYSPTSPAYSPTSP--AYSPTSPAYS 93 Query: 488 VSSPGY 505 +SP Y Sbjct: 94 PTSPAY 99 [135][TOP] >UniRef100_Q6CL79 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis RepID=Q6CL79_KLULA Length = 1720 Score = 61.2 bits (147), Expect = 4e-08 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 11/166 (6%) Frame = +2 Query: 41 MPESERGYTPGREGQRTP-----GRA-FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202 MPE + T G+EG TP G A + + +SP + G A + +T GG Sbjct: 1455 MPEHKEVKTEGQEGGATPYSNESGLANAEINVKDELMFSPL-VESGGADALAGGFTAYGG 1513 Query: 203 FSPINATASFSPIMSSADAAGR---ATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 +AT+ FS + + G ++PG +PG SP +P SP SP Y+ SP Sbjct: 1514 ADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPGYSPT---SPSYSPTSPSYSPTSPS 1570 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1571 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1606 Score = 56.2 bits (134), Expect = 1e-06 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP + GY+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1540 SPGFSPTSPGYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1595 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1596 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1654 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1655 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1690 Score = 55.5 bits (132), Expect = 2e-06 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Frame = +2 Query: 32 SPAMPE-SERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY-- 187 SP E S G++P G ++ +P+Y+ YSP +P + SP+Y Sbjct: 1532 SPGFGEVSSPGFSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSP 1587 Query: 188 TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 T P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1588 TSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1647 SY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1683 Score = 54.3 bits (129), Expect = 4e-06 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 3/140 (2%) Frame = +2 Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAG 265 G + +A +P Y G SP + T PG +SP + + S SP S + Sbjct: 1513 GADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPG-YSPTSPSYSPTSPSYSPTSPSY 1571 Query: 266 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445 T +P +P SP SP Y+ SP + + + +Y+P SP+Y T Sbjct: 1572 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPT 1623 Query: 446 SPGMGYSPSTPALAVSSPGY 505 SP YSP++P+ + +SP Y Sbjct: 1624 SPS--YSPTSPSYSPTSPSY 1641 Score = 53.9 bits (128), Expect = 6e-06 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 3/145 (2%) Frame = +2 Query: 80 GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSS 250 G +PG F +P +SP +PG + SP+Y T P +SP + + S SP S Sbjct: 1529 GPTSPG--FGEVSSP--GFSPT---SPGYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSP 1580 Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430 + T +P +P SP SP Y+ SP + + + +Y+P SP Sbjct: 1581 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSP 1632 Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505 +Y TSP YSP++P+ + +SP Y Sbjct: 1633 SYSPTSPS--YSPTSPSYSPTSPSY 1655 [136][TOP] >UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SR21_9PEZI Length = 1756 Score = 61.2 bits (147), Expect = 4e-08 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 12/171 (7%) Frame = +2 Query: 5 AAASARIARSPAMPESE----RGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA 172 A A++ SP P S GY+P +PG + +PT AR Sbjct: 1556 AGATSPFTTSPTSPFSSFAGAGGYSP-----TSPGGGY----SPTSPLMDGGARYATSPQ 1606 Query: 173 FSPAYTGPGGFSPIN-----ATASFSPIMSSADAAGRATPGRMTPGRSPA---GRFTPRM 328 FSP+ SP++ A+ ++SP S +P +P SPA +P Sbjct: 1607 FSPSSPSFSPTSPVHRPTSPASPNYSPTSPSYSPTSPTSPRHYSP-TSPAQFNSPTSPSY 1665 Query: 329 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA 481 SPASP Y+ SP G GP + +Y+PASP++ TSP YSP++P+ Sbjct: 1666 SPASPSYSPTSPNLHGA---GPT--SPSYSPASPSWSPTSPEHSYSPTSPS 1711 Score = 59.3 bits (142), Expect = 1e-07 Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 4/154 (2%) Frame = +2 Query: 50 SERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229 +E G T G G +PGRA T + SP + FS ++ G GG+SP + Sbjct: 1539 TEYGGTYGGFGGASPGRA---GATSPFTTSPT-------SPFS-SFAGAGGYSPTSPGGG 1587 Query: 230 FSPIMSSADAAGR-ATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397 +SP D R AT + +P SP SPASP Y+ SP + P Sbjct: 1588 YSPTSPLMDGGARYATSPQFSPSSPSFSPTSPVHRPTSPASPNYSPTSPSYSPTSPTSPR 1647 Query: 398 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 Y+P SPA + YSP++P+ + +SP Sbjct: 1648 H----YSPTSPAQFNSPTSPSYSPASPSYSPTSP 1677 [137][TOP] >UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36 RepID=B9WN64_CANDC Length = 1735 Score = 61.2 bits (147), Expect = 4e-08 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Frame = +2 Query: 167 TAFSPAYTGPG-GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340 TA SP Y PG G+SP + + S SP S + T +P +P SP S Sbjct: 1530 TATSPGYASPGYGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1589 Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P Y+ SP + + + +Y+P SP+Y TSP GYSP++P+ + +SP Y Sbjct: 1590 PSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1641 Score = 56.6 bits (135), Expect = 9e-07 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +PG + SP+Y T Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPGYSPTSPSYSPT 1637 Query: 191 GPGGFSPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + S+SP S + + + +P +P SP +P+ SP SP Y+ SP+ Sbjct: 1638 SPS-YSP--TSPSYSPTSPSYSPTSPQYSP--TSPSYSPT---SPQYSPTSPSYSPTSPQ 1689 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP Y TSP YSP++P + SPGY Sbjct: 1690 Y--------SPTSPSYSPTSPQYSPTSPQ--YSPTSPRYSPGSPGY 1725 [138][TOP] >UniRef100_Q692G0 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes RepID=Q692G0_NEPCL Length = 313 Score = 60.8 bits (146), Expect = 5e-08 Identities = 57/194 (29%), Positives = 79/194 (40%), Gaps = 28/194 (14%) Frame = +2 Query: 5 AAASARIARSPAM----PESERGYTPGREGQRTPGRAFDAA---MTPTYAYSPARARTPG 163 AAA+A A P + GY PG++G G A AA Y P + + PG Sbjct: 2 AAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAGPGQQGLGGYGPGQ-QGPG 60 Query: 164 GTAFSPAYTGPGGFSPINATAS-------------FSPIM-------SSADAAGRATPGR 283 G + P GPGG+ P +A+A+ + P S++ AA A PG Sbjct: 61 G--YGPGQQGPGGYGPGSASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAGPGG 118 Query: 284 MTPGRSPAGRFTP-RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 460 PG+ G + P + P+ PG AA + G GG G P A A++ G Sbjct: 119 YGPGQQGPGGYAPGQQGPSGPGSAAAAAAAAAGPGGYGPAQQGPSGPGIAASAASAGPGG 178 Query: 461 YSPSTPALAVSSPG 502 Y P+ A PG Sbjct: 179 YGPAQQGPAGYGPG 192 [139][TOP] >UniRef100_Q8WSZ3 Dragline silk protein spidroin 2 (Fragment) n=1 Tax=Nephila clavata RepID=Q8WSZ3_NEPCV Length = 301 Score = 60.5 bits (145), Expect = 6e-08 Identities = 52/152 (34%), Positives = 63/152 (41%), Gaps = 6/152 (3%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGTAFSPAYTGPGGFSPINATASF 232 GY P G PG A AA Y P + R PGG A + A GPGG+ P S Sbjct: 122 GYGPS--GLSGPGGAAAAAAAGPGGYGPGQQRPSGPGGAAAAAAAAGPGGYGPSQRGPS- 178 Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412 P ++A AAG A PG PG+ P+ PG AA + G G G G Sbjct: 179 GPGSAAAAAAG-AGPGGYGPGQK---------GPSGPGSAAAAAAAGPGGYGPSQQGPAR 228 Query: 413 YAPASPAYMATSPG----MGYSPSTPALAVSS 496 Y P+ P A + GY P A A +S Sbjct: 229 YGPSGPGSAAAAAAGAGTAGYGPGPQASAAAS 260 Score = 55.1 bits (131), Expect = 3e-06 Identities = 54/193 (27%), Positives = 70/193 (36%), Gaps = 28/193 (14%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSP-------ARART 157 A+A+A A P GY PG++G Q+ PG+ A P+ P A A Sbjct: 46 ASAAAAAAAGPG------GYGPGQQGPGQQGPGQQGPAGYGPSGPSGPGGAAAAAAAAAG 99 Query: 158 PGGTAFS--------PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------ 295 PGG P GP G+ P + ++A G PG+ P Sbjct: 100 PGGYGLGQQGPGQQGPGQQGPAGYGPSGLSGPGGAAAAAAAGPGGYGPGQQRPSGPGGAA 159 Query: 296 -----RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 460 P G + P+ PG AA + G G GG G G P S A A + G Sbjct: 160 AAAAAAGPGGYGPSQRGPSGPGSAAAAAA-GAGPGGYGPGQKGPSGPGSAAAAAAAGPGG 218 Query: 461 YSPSTPALAVSSP 499 Y PS A P Sbjct: 219 YGPSQQGPARYGP 231 Score = 53.5 bits (127), Expect = 8e-06 Identities = 46/129 (35%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPT---YAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229 GY PG++ PG A AA Y S PG A + A GPGG+ P S Sbjct: 144 GYGPGQQRPSGPGGAAAAAAAAGPGGYGPSQRGPSGPGSAAAAAAGAGPGGYGPGQKGPS 203 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG--GLGGGPAGG 403 SA AA A PG G P+ + R P+ PG AA + G G G GP Sbjct: 204 GP---GSAAAAAAAGPG----GYGPSQQGPARYGPSGPGSAAAAAAGAGTAGYGPGPQAS 256 Query: 404 AGAYAPASP 430 A A ASP Sbjct: 257 AAASRLASP 265 [140][TOP] >UniRef100_B4R347 RNA polymerase II 215kD subunit n=1 Tax=Drosophila simulans RepID=B4R347_DROSI Length = 552 Score = 60.5 bits (145), Expect = 6e-08 Identities = 54/169 (31%), Positives = 69/169 (40%), Gaps = 20/169 (11%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 162 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 213 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 214 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 261 Query: 410 AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP GYSPS+ + +SPGY Sbjct: 262 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGY 310 Score = 57.0 bits (136), Expect = 7e-07 Identities = 52/162 (32%), Positives = 71/162 (43%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAA--MTPTYAYSPARAR-TPGGTAFSPAYTGPGG 202 SP P GY+P + Q +P A + +P AYSP+ + +P ++SP T P Sbjct: 304 SPTSP----GYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSP--TSPS- 356 Query: 203 FSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 +SP + + S SP S + T TP TP SP SP Y+A SP++ Sbjct: 357 YSPSSPSYSPTSPCYSPTSPSYSPTSPNYTP-------VTPSYSPTSPNYSA-SPQYSPA 408 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G Y+P SP Y SP SP +P SP Y Sbjct: 409 SPAYSQTGV-KYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 449 Score = 55.8 bits (133), Expect = 2e-06 Identities = 54/185 (29%), Positives = 75/185 (40%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART-----PGGT 169 A+ S + SP P G +P + +P YA SP A T P T Sbjct: 236 ASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYA-SPRYASTTPNFNPQST 294 Query: 170 AFSPAYTGPGGFSP-INATASFSPIMSSADAAGRA-TPGRM-----------TPGRSPAG 310 +SP+ +G SP + TA F S A + +PG +P SP Sbjct: 295 GYSPSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPT- 353 Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490 +P SP+SP Y+ SP Y+P SP+Y TSP Y+P TP+ + Sbjct: 354 --SPSYSPSSPSYSPTSP---------------CYSPTSPSYSPTSP--NYTPVTPSYSP 394 Query: 491 SSPGY 505 +SP Y Sbjct: 395 TSPNY 399 [141][TOP] >UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia RepID=B4IK28_DROSE Length = 1887 Score = 60.5 bits (145), Expect = 6e-08 Identities = 54/169 (31%), Positives = 69/169 (40%), Gaps = 20/169 (11%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP GYSPS+ + +SPGY Sbjct: 1597 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGY 1645 Score = 57.0 bits (136), Expect = 7e-07 Identities = 52/162 (32%), Positives = 71/162 (43%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAA--MTPTYAYSPARAR-TPGGTAFSPAYTGPGG 202 SP P GY+P + Q +P A + +P AYSP+ + +P ++SP T P Sbjct: 1639 SPTSP----GYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSP--TSPS- 1691 Query: 203 FSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 +SP + + S SP S + T TP TP SP SP Y+A SP++ Sbjct: 1692 YSPSSPSYSPTSPCYSPTSPSYSPTSPNYTP-------VTPSYSPTSPNYSA-SPQYSPA 1743 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G Y+P SP Y SP SP +P SP Y Sbjct: 1744 SPAYSQTGV-KYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1784 Score = 55.8 bits (133), Expect = 2e-06 Identities = 54/185 (29%), Positives = 75/185 (40%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART-----PGGT 169 A+ S + SP P G +P + +P YA SP A T P T Sbjct: 1571 ASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYA-SPRYASTTPNFNPQST 1629 Query: 170 AFSPAYTGPGGFSP-INATASFSPIMSSADAAGRA-TPGRM-----------TPGRSPAG 310 +SP+ +G SP + TA F S A + +PG +P SP Sbjct: 1630 GYSPSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPT- 1688 Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490 +P SP+SP Y+ SP Y+P SP+Y TSP Y+P TP+ + Sbjct: 1689 --SPSYSPSSPSYSPTSP---------------CYSPTSPSYSPTSP--NYTPVTPSYSP 1729 Query: 491 SSPGY 505 +SP Y Sbjct: 1730 TSPNY 1734 [142][TOP] >UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans RepID=Q5ACI7_CANAL Length = 1728 Score = 60.5 bits (145), Expect = 6e-08 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Frame = +2 Query: 35 PAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFS 208 P P + ++ G +PG +P Y YSP +P + SP+Y T P +S Sbjct: 1515 PTSPAATSPFSYGYNSITSPGYT-----SPGYGYSPT---SPSYSPTSPSYAPTSPA-YS 1565 Query: 209 PINAT-ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 P + + A SP S + T +P SP +P SP SP Y+ SP++ Sbjct: 1566 PTSPSYAPTSPAYSPTSPSYAPT----SPAYSPT---SPAYSPTSPSYSPTSPQY----- 1613 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++PA + +SP Y Sbjct: 1614 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPSY 1648 Score = 57.0 bits (136), Expect = 7e-07 Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 4/153 (2%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFD----AAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA 226 G TP ++ + D A +P + G T++ T P SP Sbjct: 1469 GATPYKDYENARDENIDIDAGAGFSPIHIAQMNEGNIGGLTSYGGQPTSPAATSP----- 1523 Query: 227 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406 FS +S + G +PG G SP +P SP SP YA SP + + + Sbjct: 1524 -FSYGYNSITSPGYTSPGY---GYSPT---SPSYSPTSPSYAPTSPAY--------SPTS 1568 Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +YAP SPAY TSP Y+P++PA + +SP Y Sbjct: 1569 PSYAPTSPAYSPTSP--SYAPTSPAYSPTSPAY 1599 Score = 55.1 bits (131), Expect = 3e-06 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SPA + Y P A+ +P+Y+ YSP +P + SP+Y T Sbjct: 1575 SPAYSPTSPSYAPTSPAYSPTSPAYSPT-SPSYSPTSPQYSPT---SPSYSPTSPSYSPT 1630 Query: 191 GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + A + SP S + T + +P +P+ SP SP Y+ SP+ Sbjct: 1631 SPS-YSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQ 1689 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP++P + SPGY Sbjct: 1690 ---------------YSPTSPQYSPTSP--QYSPTSPQYSPGSPGY 1718 [143][TOP] >UniRef100_Q4UCP5 DNA-directed RNA polymerase n=1 Tax=Theileria annulata RepID=Q4UCP5_THEAN Length = 1678 Score = 60.1 bits (144), Expect = 8e-08 Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 4/134 (2%) Frame = +2 Query: 116 MTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG 295 M+PT SP A +P +SPAY+ SP + T++ SP A T Sbjct: 1555 MSPTSPMSPTSAISP---VYSPAYSPTSPMSPTSPTSALSPTSPVYSPAYSPT------- 1604 Query: 296 RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP----AYMATSPGMGY 463 SP +P SP Y+ SP G YAP SP AY T+P GY Sbjct: 1605 -SPTSAMSPTSPVYSPAYSPTSPNLG-------------YAPTSPVYSPAYSPTTPNYGY 1650 Query: 464 SPSTPALAVSSPGY 505 SP++P L+ +SP Y Sbjct: 1651 SPTSP-LSPTSPAY 1663 Score = 57.4 bits (137), Expect = 5e-07 Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 31/160 (19%) Frame = +2 Query: 119 TPTYAYSPARARTPGGTAFSPAYT------------GP-------------GGFSPINAT 223 +P +PA +T AFSP YT GP G FSP + T Sbjct: 1487 SPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPT 1546 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP--GYAAMSPRFGGGLGGGPA 397 + SP + + + ++P SPA T MSP SP + SP + P Sbjct: 1547 SPMSPTSPMSPTSPMSPTSAISPVYSPAYSPTSPMSPTSPTSALSPTSPVYSPAY--SPT 1604 Query: 398 GGAGAYAPA----SPAYMATSPGMGYSPSTPALAVSSPGY 505 A +P SPAY TSP +GY+P++P V SP Y Sbjct: 1605 SPTSAMSPTSPVYSPAYSPTSPNLGYAPTSP---VYSPAY 1641 [144][TOP] >UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus RepID=A5E6J4_LODEL Length = 1745 Score = 60.1 bits (144), Expect = 8e-08 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 3/152 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229 G TPG G +PG +P Y YSP +P + SP+Y T P +SP + + S Sbjct: 1519 GTTPGYGGT-SPGYG---GTSPGYGYSPT---SPSYSPTSPSYSPTSPS-YSPTSPSYSP 1570 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 SP S + T +P +P SP SP Y+ SP + + + Sbjct: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1622 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1623 SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1652 Score = 58.5 bits (140), Expect = 2e-07 Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 5/161 (3%) Frame = +2 Query: 38 AMPESERGYTPGREGQRT-PGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG-GF 205 AM ++ G GQ T PG T ++Y TPG SP Y T PG G+ Sbjct: 1491 AMSDNMNGGLTSYGGQPTSPGN------TSPFSYGT----TPGYGGTSPGYGGTSPGYGY 1540 Query: 206 SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1541 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---- 1596 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1597 ----SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1631 [145][TOP] >UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179348F Length = 1862 Score = 59.7 bits (143), Expect = 1e-07 Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 3/154 (1%) Frame = +2 Query: 53 ERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG--GTAFSPAYTGPGGFSPINATA 226 E G TPG G G + + +P + S +PG G A SP P SP N Sbjct: 1528 ETGMTPGGPGFSPAGSSEASGTSPFWMSSGGTPGSPGSPGMATSPYVPSPSSMSP-NYNY 1586 Query: 227 SFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 SP S + T T P S + TP+ S SP Y SP P+ Sbjct: 1587 PSSPQFGSLSPSMTPTNYSPTSPQYSATQQNTPKYSSMSPNY-NYSPTSPSYSPTSPSYS 1645 Query: 404 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1646 HTSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1677 Score = 57.0 bits (136), Expect = 7e-07 Identities = 55/162 (33%), Positives = 69/162 (42%), Gaps = 15/162 (9%) Frame = +2 Query: 65 TPGREGQRTPGRAFDAAMTPTY----AYSPARARTPGGTAFSPAYTGPGGFSPINATASF 232 TP TP +D TP Y + S TPGG FSPA G S + T+ F Sbjct: 1501 TPSMSPAMTP---WDQTSTPMYQNNWSSSLETGMTPGGPGFSPA-----GSSEASGTSPF 1552 Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA-AMSPRFGGGLGGGPAGGAG 409 MSS G +PG SP + P S SP Y SP+FG P+ Sbjct: 1553 W--MSSGGTPG--SPGSPGMATSP---YVPSPSSMSPNYNYPSSPQFGSL---SPSMTPT 1602 Query: 410 AYAPASPAYMAT----------SPGMGYSPSTPALAVSSPGY 505 Y+P SP Y AT SP YSP++P+ + +SP Y Sbjct: 1603 NYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSY 1644 [146][TOP] >UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii CBS767 RepID=UPI00003BD271 Length = 1749 Score = 59.7 bits (143), Expect = 1e-07 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP P S +P G +PG +PTY+ YSP +P + SP+Y T Sbjct: 1529 SPTSPFSYGATSPSFGGVTSPGYG---GTSPTYSPTSPSYSPT---SPSYSPTSPSYSPT 1582 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1583 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1641 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1642 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1677 Score = 58.2 bits (139), Expect = 3e-07 Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 3/145 (2%) Frame = +2 Query: 80 GQRTPGRAFDAAMTP--TYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSA 253 G T A D TP Y + + G FSP +T P + Sbjct: 1471 GNETGEYADDGGATPYRDYEMQDDKIQFEEGAGFSPIHTAP-----------------VS 1513 Query: 254 DAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASP 430 D +G T S G +P SP SP Y A SP FGG G G + Y+P SP Sbjct: 1514 DGSGALT--------SYGGATSP--SPTSPFSYGATSPSFGGVTSPGYGGTSPTYSPTSP 1563 Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505 +Y TSP YSP++P+ + +SP Y Sbjct: 1564 SYSPTSP--SYSPTSPSYSPTSPSY 1586 [147][TOP] >UniRef100_A8ITU3 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8ITU3_CHLRE Length = 1063 Score = 59.7 bits (143), Expect = 1e-07 Identities = 55/148 (37%), Positives = 65/148 (43%), Gaps = 3/148 (2%) Frame = +2 Query: 71 GREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSS 250 G G P AF A A +PA TP A +PA TG GF A AS + Sbjct: 833 GSSGGAAPTAAFGATGAAGAAPTPAFGVTPAFGAGAPAATG--GFGGFGAGAS----KPA 886 Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY---AAMSPRFGGGLGGGPAGGAGAYAP 421 A G A P T G +PA PA+ G+ AA +P FG G G PA GA + Sbjct: 887 APTFGAAGP---TFGAAPA--------PAAGGFGAPAAPTPAFGSGGGAAPAFGASGFGA 935 Query: 422 ASPAYMATSPGMGYSPSTPALAVSSPGY 505 A PA A +PG G ST SSP + Sbjct: 936 AQPA--APTPGFGAGASTGFGGTSSPAF 961 [148][TOP] >UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura RepID=Q9XZU9_DROSU Length = 1889 Score = 59.7 bits (143), Expect = 1e-07 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 10/177 (5%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYAYSPARARTPGGT 169 AA S R A + P GY+P G + +P++A S + +PG Sbjct: 1613 AAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGN- 1671 Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 A+SP+ T SP + + SP S + + T +P +P +PA+P Y Sbjct: 1672 AYSPSSTNYSPNSP--SYSPTSPSYSPSSPSYSPTSPCYSPSSPSYSPTSPNYTPATPSY 1729 Query: 350 AAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + PA A Y+P SP Y SP SP +P SP Y Sbjct: 1730 SPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786 Score = 57.8 bits (138), Expect = 4e-07 Identities = 52/157 (33%), Positives = 65/157 (41%), Gaps = 8/157 (5%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP F P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---FYPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATS-----PGMGYSPSTPALAVSSPGY 505 Y+P+SP Y TS P Y+ +TP S GY Sbjct: 1597 NYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGY 1633 Score = 57.0 bits (136), Expect = 7e-07 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205 SP+ + Y+P + A TP+Y+ SP + +P + SPAY+ G + Sbjct: 1698 SPSYSPTSPCYSPSSPSYSPTSPNYTPA-TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756 Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+ Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505 P G Y+ SP Y SP M YSPS+ + +SP Y Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848 [149][TOP] >UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis RepID=Q9XZS2_DROMD Length = 1889 Score = 59.7 bits (143), Expect = 1e-07 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 10/177 (5%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYAYSPARARTPGGT 169 AA S R A + P GY+P G + +P++A S + +PG Sbjct: 1613 AAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGN- 1671 Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 A+SP+ T SP + + SP S + + T +P +P +PA+P Y Sbjct: 1672 AYSPSSTNYSPNSP--SYSPTSPSYSPSSPSYSPTSPCYSPSSPSYSPTSPNYTPATPSY 1729 Query: 350 AAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + PA A Y+P SP Y SP SP +P SP Y Sbjct: 1730 SPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786 Score = 57.8 bits (138), Expect = 4e-07 Identities = 52/157 (33%), Positives = 65/157 (41%), Gaps = 8/157 (5%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP F P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---FYPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATS-----PGMGYSPSTPALAVSSPGY 505 Y+P+SP Y TS P Y+ +TP S GY Sbjct: 1597 NYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGY 1633 Score = 57.0 bits (136), Expect = 7e-07 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205 SP+ + Y+P + A TP+Y+ SP + +P + SPAY+ G + Sbjct: 1698 SPSYSPTSPCYSPSSPSYSPTSPNYTPA-TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756 Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+ Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505 P G Y+ SP Y SP M YSPS+ + +SP Y Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848 [150][TOP] >UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche RepID=Q9XZS1_DROGU Length = 1889 Score = 59.7 bits (143), Expect = 1e-07 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151 AA S R A + P GY+P G + +P++A YSP A Sbjct: 1613 AAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1672 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325 +P T +SP +SP + S+SP S+ + +P +P SP +P Sbjct: 1673 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490 +PA+P Y+ SP + PA A Y+P SP Y SP SP +P Sbjct: 1722 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781 Query: 491 SSPGY 505 SP Y Sbjct: 1782 GSPQY 1786 Score = 56.6 bits (135), Expect = 9e-07 Identities = 51/157 (32%), Positives = 65/157 (41%), Gaps = 8/157 (5%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---YYPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATS-----PGMGYSPSTPALAVSSPGY 505 Y+P+SP Y TS P Y+ +TP S GY Sbjct: 1597 NYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGY 1633 Score = 56.2 bits (134), Expect = 1e-06 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205 SP+ + YTP TP+Y+ SP + +P + SPAY+ G + Sbjct: 1712 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756 Query: 206 SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382 SP + T S SP + + + TPG +P SPA +P+ SP SP Y+ SP+ Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811 Query: 383 GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505 P G Y+ SP Y SP M YSPS+ + +SP Y Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848 [151][TOP] >UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii RepID=B5RSM9_DEBHA Length = 1749 Score = 59.7 bits (143), Expect = 1e-07 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP P S +P G +PG +PTY+ YSP +P + SP+Y T Sbjct: 1529 SPTSPFSYGATSPSFGGVTSPGYG---GTSPTYSPTSPSYSPT---SPSYSPTSPSYSPT 1582 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1583 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1641 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1642 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1677 Score = 58.2 bits (139), Expect = 3e-07 Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 3/145 (2%) Frame = +2 Query: 80 GQRTPGRAFDAAMTP--TYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSA 253 G T A D TP Y + + G FSP +T P + Sbjct: 1471 GNETGEYADDGGATPYRDYEMQDDKIQFEEGAGFSPIHTAP-----------------VS 1513 Query: 254 DAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASP 430 D +G T S G +P SP SP Y A SP FGG G G + Y+P SP Sbjct: 1514 DGSGALT--------SYGGATSP--SPTSPFSYGATSPSFGGVTSPGYGGTSPTYSPTSP 1563 Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505 +Y TSP YSP++P+ + +SP Y Sbjct: 1564 SYSPTSP--SYSPTSPSYSPTSPSY 1586 [152][TOP] >UniRef100_Q16988 Fibroin-4 (Fragment) n=1 Tax=Araneus diadematus RepID=Q16988_ARADI Length = 410 Score = 59.3 bits (142), Expect = 1e-07 Identities = 54/180 (30%), Positives = 67/180 (37%), Gaps = 15/180 (8%) Frame = +2 Query: 11 ASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA------ 172 ASA A + A GY PG +G PG + A + A A PGG Sbjct: 118 ASAAAAAAAAAASGPGGYGPGSQGPSGPGAYGPGGPGSSAAAAAAAASGPGGYGPGSQGP 177 Query: 173 FSPAYTGPGG---FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 P GPGG + A A P + G + PG PG S + + + P Sbjct: 178 SGPGVYGPGGPGSSAAAAAAAGSGPGGYGPENQGPSGPGGYGPGGSGSSAAAAAAAASGP 237 Query: 344 G------YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G P GG G G GG+G A A+ A A S GY P + S PGY Sbjct: 238 GGYGPGSQGPSGPGGSGGYGPGSQGGSGPGASAAAAAAAASGPGGYGPGSQ--GPSGPGY 295 Score = 53.5 bits (127), Expect = 8e-06 Identities = 49/170 (28%), Positives = 69/170 (40%), Gaps = 10/170 (5%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPG--------RAFDAAMTPTYAYSPARARTPGGTAFSP 181 ++ P+ P GY PG +G PG A AA + Y P G A+ P Sbjct: 91 SQGPSGPGGSGGYGPGSQGASGPGGPGASAAAAAAAAAASGPGGYGPGSQGPSGPGAYGP 150 Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 GPG + A A+ P + G + PG PG + + + PG Sbjct: 151 G--GPGSSAAAAAAAASGPGGYGPGSQGPSGPGVYGPGGPGSSAAAAAAAGSGPGGYGPE 208 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST--PALAVSSPGY 505 + G GG GG+G+ A A+ A A+ PG GY P + P+ S GY Sbjct: 209 NQGPSGPGGYGPGGSGSSAAAAAA-AASGPG-GYGPGSQGPSGPGGSGGY 256 [153][TOP] >UniRef100_O94231 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kluyveromyces lactis RepID=O94231_KLULA Length = 414 Score = 59.3 bits (142), Expect = 1e-07 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 11/165 (6%) Frame = +2 Query: 44 PESERGYTPGREGQRTP-----GRA-FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205 PE + T G+EG TP G A + + +SP + G A + +T GG Sbjct: 150 PEHKEVKTEGQEGGATPYSNESGLANAEINVKDELMFSPL-VESGGADALAGGFTAYGGA 208 Query: 206 SPINATASFSPIMSSADAAGR---ATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 +AT+ FS + + G ++PG +PG SP +P SP SP Y+ SP + Sbjct: 209 DYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPGYSPT---SPSYSPTSPSYSPTSPSY 265 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 266 --------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 300 Score = 56.2 bits (134), Expect = 1e-06 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP + GY+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 234 SPGFSPTSPGYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 289 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 290 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 348 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 349 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 384 Score = 55.5 bits (132), Expect = 2e-06 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Frame = +2 Query: 32 SPAMPE-SERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY-- 187 SP E S G++P G ++ +P+Y+ YSP +P + SP+Y Sbjct: 226 SPGFGEVSSPGFSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSP 281 Query: 188 TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 T P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 282 TSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 340 Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 341 SY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 377 Score = 54.3 bits (129), Expect = 4e-06 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 3/140 (2%) Frame = +2 Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAG 265 G + +A +P Y G SP + T PG +SP + + S SP S + Sbjct: 207 GADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPG-YSPTSPSYSPTSPSYSPTSPSY 265 Query: 266 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445 T +P +P SP SP Y+ SP + + + +Y+P SP+Y T Sbjct: 266 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPT 317 Query: 446 SPGMGYSPSTPALAVSSPGY 505 SP YSP++P+ + +SP Y Sbjct: 318 SPS--YSPTSPSYSPTSPSY 335 Score = 53.9 bits (128), Expect = 6e-06 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 3/145 (2%) Frame = +2 Query: 80 GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSS 250 G +PG F +P +SP +PG + SP+Y T P +SP + + S SP S Sbjct: 223 GPTSPG--FGEVSSP--GFSPT---SPGYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSP 274 Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430 + T +P +P SP SP Y+ SP + + + +Y+P SP Sbjct: 275 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSP 326 Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505 +Y TSP YSP++P+ + +SP Y Sbjct: 327 SYSPTSPS--YSPTSPSYSPTSPSY 349 [154][TOP] >UniRef100_Q692F8 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes RepID=Q692F8_NEPCL Length = 296 Score = 58.9 bits (141), Expect = 2e-07 Identities = 52/176 (29%), Positives = 71/176 (40%), Gaps = 28/176 (15%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAYTGPGGFSPINAT 223 GY PG++G G A AA Y P + + PGG + P GPGG+ P +A+ Sbjct: 3 GYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQ-QGPGG--YGPGQQGPGGYGPGSAS 59 Query: 224 AS-------------FSP---------IMSSADAAGRATPGRMTPGRSPAGRFTP-RMSP 334 A+ + P S+A AA A PG PG+ G + P + P Sbjct: 60 AAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGYAPGQQGP 119 Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 + PG AA + G GG G P A A++ GY P+ A PG Sbjct: 120 SGPGSAAAAAAAAAGPGGYGPAQQGPSGPGIAASAASAGPGGYGPAQQGPAGYGPG 175 [155][TOP] >UniRef100_Q4N0F9 DNA-directed RNA polymerase n=1 Tax=Theileria parva RepID=Q4N0F9_THEPA Length = 1681 Score = 58.5 bits (140), Expect = 2e-07 Identities = 49/136 (36%), Positives = 62/136 (45%), Gaps = 6/136 (4%) Frame = +2 Query: 116 MTPTYAYSPARARTPGGTAFSPAY--TGP-GGFSPINATASFSPIMSSADAAGRATPGRM 286 M+PT SP + +SPAY T P SP NA + SP+ S A +P Sbjct: 1555 MSPTSPMSPMSPTSAMSPVYSPAYSPTSPMSPTSPANALSPTSPVYSPA-----YSPTSP 1609 Query: 287 TPGRSPAGR-FTPRMSPASP--GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 457 T SP ++P SP SP GYA SP + SPAY TSP Sbjct: 1610 TSAMSPTSPVYSPAYSPTSPNLGYAPTSPVY------------------SPAYSPTSPNY 1651 Query: 458 GYSPSTPALAVSSPGY 505 GYSP++P L+ +SP Y Sbjct: 1652 GYSPTSP-LSPTSPAY 1666 Score = 56.6 bits (135), Expect = 9e-07 Identities = 54/163 (33%), Positives = 67/163 (41%), Gaps = 34/163 (20%) Frame = +2 Query: 119 TPTYAYSPARARTPGGTAFSPAYT------------GP-------------GGFSPINAT 223 +P +PA +T AFSP YT GP G FSP + T Sbjct: 1487 SPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPT 1546 Query: 224 ASFSPI--MSSADAAGRATP-GRMTPGRSPAGRFTPRMSPASPGYAAM--SPRFGGGLGG 388 + SP MS +P M+P SPA T MSP SP A SP + Sbjct: 1547 SPMSPTSPMSPTSPMSPMSPTSAMSPVYSPAYSPTSPMSPTSPANALSPTSPVYSPAYS- 1605 Query: 389 GPAGGAGAYAPASP----AYMATSPGMGYSPSTPALAVSSPGY 505 P A +P SP AY TSP +GY+P++P V SP Y Sbjct: 1606 -PTSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSP---VYSPAY 1644 [156][TOP] >UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179338A Length = 1862 Score = 58.2 bits (139), Expect = 3e-07 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 23/170 (13%) Frame = +2 Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARA----RTPGGTAFSPAYTGPG-GFSPINATAS 229 TP TP +D TP Y S + + TPGG FSPA + G SP T+ Sbjct: 1501 TPSMSPAMTP---WDQTSTPVYQNSWSSSLEAGMTPGGPGFSPAGSSEASGTSPFWMTSG 1557 Query: 230 FSPIMSSADAAGRAT------PGRMTPG----RSPA-GRFTPRMSPASPGYAAMSPRFGG 376 +P S + G AT P M+P SP G +P M+P + Y+ SP++ Sbjct: 1558 GTP--GSPGSPGMATSPYVPSPNSMSPNYNYPSSPQFGSMSPSMTPTN--YSPTSPQYSA 1613 Query: 377 GLGGGPAGGAGA----YAPASPAYMATSPG---MGYSPSTPALAVSSPGY 505 P + + Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1614 TQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPSY 1663 Score = 57.0 bits (136), Expect = 7e-07 Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 12/163 (7%) Frame = +2 Query: 53 ERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG--GTAFSPAYTGPGGFSPINATA 226 E G TPG G G + + +P + S +PG G A SP P SP N Sbjct: 1528 EAGMTPGGPGFSPAGSSEASGTSPFWMTSGGTPGSPGSPGMATSPYVPSPNSMSP-NYNY 1586 Query: 227 SFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMS---------PASPGYAAMSPRFGG 376 SP S + T T P S + TP+ S P SP Y+ SP + Sbjct: 1587 PSSPQFGSMSPSMTPTNYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSH 1646 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1647 T---SYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1684 [157][TOP] >UniRef100_Q692F7 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes RepID=Q692F7_NEPCL Length = 236 Score = 58.2 bits (139), Expect = 3e-07 Identities = 53/148 (35%), Positives = 67/148 (45%), Gaps = 2/148 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238 GY PG++G G A AA A P + + PGG + P GPGG+ P S P Sbjct: 12 GYGPGQQGPSGSGSAAAAA-----AAGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPS-GP 62 Query: 239 IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA-GGAGAY 415 ++A AA A PG G PA + P+ PG AA + G G G GPA G Y Sbjct: 63 GSAAAAAAAAAGPG----GYGPA-----QQGPSGPGIAASAASAGPG-GYGPAQQGPAGY 112 Query: 416 APASPAYMATSPG-MGYSPSTPALAVSS 496 P S + G GY P + A A +S Sbjct: 113 GPGSAVAASAGAGSAGYGPGSQASAAAS 140 [158][TOP] >UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta RepID=B3NUC1_DROER Length = 1889 Score = 58.2 bits (139), Expect = 3e-07 Identities = 52/185 (28%), Positives = 76/185 (41%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAA----MTPTYA------YSPARA 151 A+AS R A + P GY+P G + +P++A YSPA A Sbjct: 1613 ASASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTPHFQSSPSFAGSGSNIYSPANA 1672 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325 +P +SP +SP + S+SP S+ + +P +P SP +P Sbjct: 1673 YSPSSANYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490 +P +P Y+ SP + PA A + Y+P SP Y SP SP +P Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781 Query: 491 SSPGY 505 SP Y Sbjct: 1782 GSPQY 1786 Score = 56.6 bits (135), Expect = 9e-07 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP Y+ ++P A ++P + Sbjct: 1597 NYSPSSPNYSPTSP--LYASASPRYASTTPNF 1626 [159][TOP] >UniRef100_C5E245 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5E245_LACTC Length = 1740 Score = 58.2 bits (139), Expect = 3e-07 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196 A SP + +PG G +PG +PT AYSP +P + SP+Y T P Sbjct: 1520 ASSPFSGYGDAPTSPGFGGVASPG------FSPTSPAYSPT---SPSYSPTSPSYSPTSP 1570 Query: 197 GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 +SP + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1571 S-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1628 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1629 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1663 Score = 55.1 bits (131), Expect = 3e-06 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1548 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1603 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1604 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1662 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1663 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1698 Score = 53.5 bits (127), Expect = 8e-06 Identities = 37/112 (33%), Positives = 56/112 (50%) Frame = +2 Query: 170 AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 A S +T GG A++ FS + + G G +PG SP +P SP SP Y Sbjct: 1504 AMSGGFTAYGGADYGGASSPFSGYGDAPTSPGFG--GVASPGFSPT---SPAYSPTSPSY 1558 Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1559 SPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1600 Score = 53.5 bits (127), Expect = 8e-06 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1569 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1624 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1625 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1683 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + SP Y Sbjct: 1684 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPGSPSY 1719 [160][TOP] >UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans RepID=C4YN85_CANAL Length = 1742 Score = 58.2 bits (139), Expect = 3e-07 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 9/119 (7%) Frame = +2 Query: 176 SPAYTGPG-GFSPINAT--------ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM 328 SP YT PG G+SP + + A SP S + T +P +P Sbjct: 1533 SPGYTSPGYGYSPTSPSYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAY 1592 Query: 329 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP SP YA SP + + + AY+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1593 SPTSPSYAPTSPAY--------SPTSPAYSPTSPSYSPTSP--QYSPTSPSYSPTSPSY 1641 Score = 55.1 bits (131), Expect = 3e-06 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SPA + Y P A+ +P+Y+ YSP +P + SP+Y T Sbjct: 1589 SPAYSPTSPSYAPTSPAYSPTSPAYSPT-SPSYSPTSPQYSPT---SPSYSPTSPSYSPT 1644 Query: 191 GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + A + SP S + T + +P +P+ SP SP Y+ SP+ Sbjct: 1645 SPS-YSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQ 1703 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P SP Y TSP YSP++P + SPGY Sbjct: 1704 ---------------YSPTSPQYSPTSP--QYSPTSPQYSPGSPGY 1732 [161][TOP] >UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JYP8_SCHJY Length = 1748 Score = 58.2 bits (139), Expect = 3e-07 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 5/173 (2%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGY--TPGREGQRTPG--RAFDAAMTPTYAYSPARARTPGGT 169 DAA S I S + + G +P R+PG F A +P ++ S + + +P Sbjct: 1502 DAAFSPLIQTSQDTHDDDYGMMASPYGADARSPGYMSPFSGASSPGFSPS-SPSYSPSSP 1560 Query: 170 AFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG 346 A+SP T P +SP + + S SP S + T +P +P SP SP Sbjct: 1561 AYSP--TSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1617 Query: 347 YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+ SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1618 YSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1660 Score = 56.6 bits (135), Expect = 9e-07 Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187 A SP S Y+P ++ +P+Y+ YSP +P + SP+Y Sbjct: 1543 ASSPGFSPSSPSYSPSSPAYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYS 1598 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1599 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1657 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1658 PSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1702 Score = 56.2 bits (134), Expect = 1e-06 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY- 187 ARSP GY G +PG + +P+Y AYSP +P + SP+Y Sbjct: 1531 ARSP-------GYMSPFSGASSPGFS---PSSPSYSPSSPAYSPT---SPSYSPTSPSYS 1577 Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361 T P +SP + + S SP S + T +P +P SP SP Y+ S Sbjct: 1578 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1636 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1637 PSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1681 Score = 54.7 bits (130), Expect = 3e-06 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1587 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1642 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1643 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1701 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + G A G +P SP Y TSP YSP++P+ + +SP Y Sbjct: 1702 YSPGHSAQNA--QGRMSPRSPVYSPTSPS--YSPTSPSYSPTSPRY 1743 [162][TOP] >UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO Length = 1752 Score = 58.2 bits (139), Expect = 3e-07 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 3/163 (1%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199 A SP + Y+P G T A M + +YSP +P + SP+Y T P Sbjct: 1546 AMSPGYGLTSPSYSPSSPGYSTS----PAYMPSSPSYSPT---SPSYSPTSPSYSPTSPS 1598 Query: 200 GFSPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 +SP + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1599 -YSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1655 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1656 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1690 Score = 55.8 bits (133), Expect = 2e-06 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 5/170 (2%) Frame = +2 Query: 11 ASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARART-PGGTAFSPA 184 +S + SPA S Y+P ++ +P+Y+ SP+ + T P + SP+ Sbjct: 1561 SSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSATSPSYSPTSPS 1619 Query: 185 Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355 Y T P +SP + + S SP S + T +P +P SP SP Y+ Sbjct: 1620 YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1679 TSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1725 Score = 53.9 bits (128), Expect = 6e-06 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1644 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1645 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1703 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1704 YSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1746 [163][TOP] >UniRef100_UPI0000F2E706 PREDICTED: similar to eomesodermin homolog (Xenopus laevis), n=1 Tax=Monodelphis domestica RepID=UPI0000F2E706 Length = 499 Score = 57.8 bits (138), Expect = 4e-07 Identities = 52/176 (29%), Positives = 66/176 (37%), Gaps = 12/176 (6%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181 D +S P +P+ +G G E + A AA A + A AR P + Sbjct: 91 DTFSSGASVAKPGVPDGRKGSPCGDEELPSAAAAAAAAAAAAAAAAAAAARYPMDSLSPD 150 Query: 182 AY----TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG----RSPAGRFTP----R 325 Y GP + + A S P ++A AA A G + P R P G P Sbjct: 151 RYYLQSPGPPQGAELAAPCSLFPYPAAAAAAAAAQHGSVYPAPNGARYPYGSMLPPGGFS 210 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS 493 + SPG A P GG G GP GG G P Y + PG Y P A S Sbjct: 211 AAVCSPGRAQFGPGGPGGPGSGPGGGGG---PGGYQYAQSGPGALYGPYPGAATAS 263 [164][TOP] >UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1 Tax=Drosophila erecta RepID=Q1WKU4_DROER Length = 760 Score = 57.8 bits (138), Expect = 4e-07 Identities = 53/154 (34%), Positives = 69/154 (44%), Gaps = 5/154 (3%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSPAYTGPGGFSPINATASF 232 G TP TP + TP Y P A TPGG +FSP+ Sbjct: 639 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPS---------------- 679 Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412 +++DA+G M+P SPA P SP+SPG +MSP F P+ Sbjct: 680 ----AASDASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS----- 720 Query: 413 YAPASPAYMATSPG---MGYSPSTPALAVSSPGY 505 Y+P SP Y A+SPG YSPS+P + +SP Y Sbjct: 721 YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLY 754 [165][TOP] >UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis RepID=B4MAN9_DROVI Length = 1889 Score = 57.8 bits (138), Expect = 4e-07 Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 10/159 (6%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPA---RARTPGGTAFSP-AYTGPGGFSPINATA 226 G TP TP + TP Y +SP+ TPGG +FSP A + G SP Sbjct: 1497 GSTPSMTPPMTP---WVNCHTPRY-FSPSGHVSGMTPGGPSFSPSAASDASGMSP----- 1547 Query: 227 SFSPIMSSADAAGRATPG-RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 S+SP + + ++PG M+P S + +P SP SP Y A SP G Sbjct: 1548 SWSP---AHPGSSPSSPGPSMSPHFSTSPSVSPSYSPTSPNYTASSP----------GGA 1594 Query: 404 AGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505 + Y+P+SP Y TSP + Y+ +TP S GY Sbjct: 1595 SPNYSPSSPNYSPTSPLYTATSLRYASATPNFNPQSTGY 1633 Score = 57.4 bits (137), Expect = 5e-07 Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 10/176 (5%) Frame = +2 Query: 8 AASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYAYSPARARTPGGTA 172 A S R A + P GY+P G + +P++A S + +PG A Sbjct: 1614 ATSLRYASATPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGN-A 1672 Query: 173 FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352 +SP+ + SP + + SP S + + T +P +P +PA+P Y+ Sbjct: 1673 YSPSSSNYSSNSP--SYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYS 1730 Query: 353 AMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + PA A + Y+P SP Y SP SP +P SP Y Sbjct: 1731 PTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786 Score = 54.3 bits (129), Expect = 4e-06 Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 5/163 (3%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPG-GF 205 SP+ + YTP TP+Y+ SP + +P + SPAY+ G + Sbjct: 1712 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGVKY 1756 Query: 206 SPINATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 SP + T +SP S D + PG + TPG +P+ SP SP Y+ SP+ Sbjct: 1757 SPTSPT--YSPPSPSYDGS----PGSPQYTPGSPQYSPTSPKYSPTSPLYSPSSPQHSPS 1810 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505 P G Y+ SP Y SP M YSPS+ + +SP Y Sbjct: 1811 NQYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848 [166][TOP] >UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata RepID=Q6FQS9_CANGA Length = 1715 Score = 57.8 bits (138), Expect = 4e-07 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196 A SP + +PG G +PG +PT AYSP +P + SP+Y T P Sbjct: 1519 ATSPFGAYGDAPASPGFGGVSSPG------FSPTSPAYSPT---SPSYSPTSPSYSPTSP 1569 Query: 197 GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 +SP + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1570 S-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1627 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1628 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1662 Score = 56.2 bits (134), Expect = 1e-06 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 3/140 (2%) Frame = +2 Query: 95 GRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAG 265 G + A +P AY A A G SP + T P +SP + + S SP S + Sbjct: 1513 GAEYGGATSPFGAYGDAPASPGFGGVSSPGFSPTSPA-YSPTSPSYSPTSPSYSPTSPSY 1571 Query: 266 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445 T +P +P SP SP Y+ SP + + + +Y+P SP+Y T Sbjct: 1572 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPT 1623 Query: 446 SPGMGYSPSTPALAVSSPGY 505 SP YSP++P+ + +SP Y Sbjct: 1624 SP--SYSPTSPSYSPTSPSY 1641 Score = 55.1 bits (131), Expect = 3e-06 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1547 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1602 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1603 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1661 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1662 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1697 [167][TOP] >UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054 RepID=UPI0000F24379 Length = 1739 Score = 57.4 bits (137), Expect = 5e-07 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--TGPGG 202 P S +P G +P +F +++P Y +YSP +P + SP+Y T P Sbjct: 1517 PTSPSATSPFSYGSTSP--SFGGSVSPGYGGTSPSYSPT---SPSYSPTSPSYSPTSPS- 1570 Query: 203 FSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 +SP + A + SP S + T +P +P SP SP Y+ SP + Sbjct: 1571 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1627 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1628 -----SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1662 Score = 55.1 bits (131), Expect = 3e-06 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 4/170 (2%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPA 184 +A++ + P +PG G + +PT +YSP +P + SPA Sbjct: 1521 SATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPA 1577 Query: 185 Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355 Y T P +SP + + S SP S + T +P +P SP SP Y+ Sbjct: 1578 YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1637 TSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1683 Score = 54.3 bits (129), Expect = 4e-06 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Frame = +2 Query: 224 ASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397 A FSPI ++ D +G T S G+ T + + Y + SP FGG + G Sbjct: 1493 AGFSPIHTAQVQDVSGGLT--------SYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYG 1544 Query: 398 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1545 GTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAY 1578 [168][TOP] >UniRef100_Q4G1Y1 Major ampullate spidroin 2 (Fragment) n=1 Tax=Latrodectus hesperus RepID=Q4G1Y1_9ARAC Length = 542 Score = 57.4 bits (137), Expect = 5e-07 Identities = 53/180 (29%), Positives = 67/180 (37%), Gaps = 14/180 (7%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 A A+A A A P +++ Y PG G A Y A PGG + A Sbjct: 78 AGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAASGPGPSGYGPGAAGPSGPGGAGAAAA 137 Query: 185 Y-----TGPGGF---------SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322 +GPGG+ S + P S A AA A G PGR + Sbjct: 138 AAAAGGSGPGGYGQGPSGYGPSGPGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGQ 195 Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 S A+ AA P +GG G GP GGAGA A A+ Y P A ++ G Sbjct: 196 GSSGAAAAAAAGGPGYGGQQGFGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAAAG 254 Score = 54.7 bits (130), Expect = 3e-06 Identities = 57/181 (31%), Positives = 70/181 (38%), Gaps = 15/181 (8%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP---------ARARTP 160 AA+A A P ++GY PG G A A AY P A A P Sbjct: 56 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAASGP 114 Query: 161 GGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340 G + + P GP G A A+ A AAG + PG G+ P+G P+ Sbjct: 115 GPSGYGPGAAGPSGPGGAGAAAA-------AAAAGGSGPGGY--GQGPSG-----YGPSG 160 Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG------MGYSPSTPALAVSSPG 502 PG G G GP GG+GA A A+ A PG G S + A A PG Sbjct: 161 PG---------GQQGYGP-GGSGAAAAAAAAAGGAGPGRQQGYGQGSSGAAAAAAAGGPG 210 Query: 503 Y 505 Y Sbjct: 211 Y 211 Score = 53.5 bits (127), Expect = 8e-06 Identities = 57/180 (31%), Positives = 68/180 (37%), Gaps = 16/180 (8%) Frame = +2 Query: 5 AAASARIARSPAMPESERGYTPGREGQRT------PGRAFDAAMTPTYAYSPARARTPG- 163 AAA+A A A P ++GY G G PG P A + A A G Sbjct: 174 AAAAAAAAAGGAGPGRQQGYGQGSSGAAAAAAAGGPGYGGQQGFGPGGAGAAAAAAAGGA 233 Query: 164 GTAFSPAYTGPGGFSPINATAS---------FSPIMSSADAAGRATPGRMTPGRSPAGRF 316 G AY GPGG A A + P S A AA A G PGR + Sbjct: 234 GPGRQQAY-GPGGSGAAAAAAGGAGPGRQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--Y 290 Query: 317 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 S A+ AA P +GG G GP GGAGA A A+ Y P A ++ Sbjct: 291 GQGSSGAAAAAAAGGPGYGGQQGFGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAA 349 [169][TOP] >UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster RepID=A9UNH9_DROME Length = 1887 Score = 57.4 bits (137), Expect = 5e-07 Identities = 53/169 (31%), Positives = 68/169 (40%), Gaps = 20/169 (11%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP GYSPS+ + +SP Y Sbjct: 1597 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVY 1645 Score = 55.8 bits (133), Expect = 2e-06 Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 18/183 (9%) Frame = +2 Query: 11 ASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARART 157 AS R A + P GY+P G + + +P++A YSP A + Sbjct: 1613 ASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYS 1672 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPRMS 331 P + +SP +SP + S+SP S+ + +P +P SP +P + Sbjct: 1673 PSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPNYT 1721 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSS 496 P +P Y+ SP + PA A + Y+P SP Y SP SP +P S Sbjct: 1722 PVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGS 1781 Query: 497 PGY 505 P Y Sbjct: 1782 PQY 1784 [170][TOP] >UniRef100_C5DXL0 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732 RepID=C5DXL0_ZYGRC Length = 1744 Score = 57.4 bits (137), Expect = 5e-07 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 2/149 (1%) Frame = +2 Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPG-GFSPINATAS-FSP 238 +PG G +PG + +PTY SP +P + SP+Y+ P +SP + + S SP Sbjct: 1527 SPGFGGVSSPGFS---PSSPTY--SPT---SPSYSPTSPSYSPPSPNYSPTSPSYSPTSP 1578 Query: 239 IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 418 S + T +P +P SP SP Y+ SP + + + +Y+ Sbjct: 1579 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 1637 Query: 419 PASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1638 PTSPSYSPTSP--SYSPTSPSYSPTSPSY 1664 Score = 54.3 bits (129), Expect = 4e-06 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP + Y+P P + +P+Y+ YSP +P + SP+Y T Sbjct: 1542 SPTYSPTSPSYSPTSPSYSPPSPNYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1597 Query: 191 GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + S+SP S + +P SP +P SP SP Y+ SP + Sbjct: 1598 SPS-YSP--TSPSYSPTSPSYSPTSPSY-SPTSPSYSPT---SPSYSPTSPSYSPTSPSY 1650 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1651 --------SPTSPSYSPTSPSYSPTSP--NYSPTSPSYSPTSPSY 1685 Score = 53.5 bits (127), Expect = 8e-06 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1556 SPSYSPPSPNYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1611 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1612 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPN 1670 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1671 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1706 [171][TOP] >UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N128_COPC7 Length = 1642 Score = 57.4 bits (137), Expect = 5e-07 Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 7/137 (5%) Frame = +2 Query: 116 MTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA-TASFSPIMSSA---DAAGRATPGR 283 M+P YSP+ A+SP G SP A T+ FS +++ D+ +AT Sbjct: 1492 MSPGPGYSPSSPN-----AYSPTSPGMVPRSPYGAPTSPFSNQYATSPFYDSRRQATSPT 1546 Query: 284 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA---YAPASPAYMATSPG 454 +P AG +P SP SPG++ SP G P G+ A Y+PASP+Y Sbjct: 1547 YSPTSPIAGLTSPAYSPTSPGFSPTSPN--GYSPQSPNFGSPASPNYSPASPSYSPAPAS 1604 Query: 455 MGYSPSTPALAVSSPGY 505 YSPS+P + +SP + Sbjct: 1605 PNYSPSSPTWSPTSPAH 1621 [172][TOP] >UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis RepID=A3GID7_PICST Length = 1739 Score = 57.4 bits (137), Expect = 5e-07 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--TGPGG 202 P S +P G +P +F +++P Y +YSP +P + SP+Y T P Sbjct: 1517 PTSPSATSPFSYGSTSP--SFGGSVSPGYGGTSPSYSPT---SPSYSPTSPSYSPTSPS- 1570 Query: 203 FSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379 +SP + A + SP S + T +P +P SP SP Y+ SP + Sbjct: 1571 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1627 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1628 -----SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1662 Score = 55.1 bits (131), Expect = 3e-06 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 4/170 (2%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPA 184 +A++ + P +PG G + +PT +YSP +P + SPA Sbjct: 1521 SATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPA 1577 Query: 185 Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355 Y T P +SP + + S SP S + T +P +P SP SP Y+ Sbjct: 1578 YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1637 TSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1683 Score = 54.3 bits (129), Expect = 4e-06 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Frame = +2 Query: 224 ASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397 A FSPI ++ D +G T S G+ T + + Y + SP FGG + G Sbjct: 1493 AGFSPIHTAQVQDVSGGLT--------SYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYG 1544 Query: 398 GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1545 GTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAY 1578 Score = 53.5 bits (127), Expect = 8e-06 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P A+ +P+Y+ YSP +P + SP+Y T Sbjct: 1554 SPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1609 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1610 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1668 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P + +SP Y Sbjct: 1669 Y--------SPTSPSYSPTSPSYSPTSPQ--YSPTSPQYSPTSPSY 1704 [173][TOP] >UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila melanogaster RepID=RPB1_DROME Length = 1887 Score = 57.4 bits (137), Expect = 5e-07 Identities = 53/169 (31%), Positives = 68/169 (40%), Gaps = 20/169 (11%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP GYSPS+ + +SP Y Sbjct: 1597 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVY 1645 Score = 55.8 bits (133), Expect = 2e-06 Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 18/183 (9%) Frame = +2 Query: 11 ASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARART 157 AS R A + P GY+P G + + +P++A YSP A + Sbjct: 1613 ASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYS 1672 Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPRMS 331 P + +SP +SP + S+SP S+ + +P +P SP +P + Sbjct: 1673 PSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPNYT 1721 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSS 496 P +P Y+ SP + PA A + Y+P SP Y SP SP +P S Sbjct: 1722 PVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGS 1781 Query: 497 PGY 505 P Y Sbjct: 1782 PQY 1784 [174][TOP] >UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba RepID=B4PY98_DROYA Length = 1889 Score = 57.0 bits (136), Expect = 7e-07 Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAA----MTPTYA------YSPARA 151 A+AS R A + P GY+P G + +P++A YSP A Sbjct: 1613 ASASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTPNFQSSPSFAGSGSNIYSPGNA 1672 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325 +P + +SP +SP + S+SP S+ + +P +P SP +P Sbjct: 1673 YSPSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490 +P +P Y+ SP + PA A + Y+P SP Y SP SP +P Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781 Query: 491 SSPGY 505 SP Y Sbjct: 1782 GSPQY 1786 Score = 56.2 bits (134), Expect = 1e-06 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP Y+ ++P A ++P + Sbjct: 1597 NYSPSSPNYSPTSP--LYASASPRYASTTPNF 1626 [175][TOP] >UniRef100_C8Z6G2 Rpo21p n=1 Tax=Saccharomyces cerevisiae EC1118 RepID=C8Z6G2_YEAST Length = 1733 Score = 57.0 bits (136), Expect = 7e-07 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SPGY Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710 [176][TOP] >UniRef100_C7GKZ2 Rpo21p n=2 Tax=Saccharomyces cerevisiae RepID=C7GKZ2_YEAS2 Length = 1733 Score = 57.0 bits (136), Expect = 7e-07 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SPGY Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710 [177][TOP] >UniRef100_B3LH31 DNA-directed RNA polymerase n=1 Tax=Saccharomyces cerevisiae RM11-1a RepID=B3LH31_YEAS1 Length = 1733 Score = 57.0 bits (136), Expect = 7e-07 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SPGY Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710 [178][TOP] >UniRef100_P04050 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Saccharomyces cerevisiae RepID=RPB1_YEAST Length = 1733 Score = 57.0 bits (136), Expect = 7e-07 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SPGY Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710 [179][TOP] >UniRef100_Q7XRB2 OSJNBa0006B20.10 protein n=3 Tax=Oryza sativa RepID=Q7XRB2_ORYSJ Length = 335 Score = 56.6 bits (135), Expect = 9e-07 Identities = 51/162 (31%), Positives = 69/162 (42%), Gaps = 4/162 (2%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPG-GFS 208 +PA P R +P + P RA +P A P RA +P T SP +S Sbjct: 64 TPASPPHRRAASPDYTPESPPRRAASPDYSP--ASPPRRAASPDYTPESPPRRAASPDYS 121 Query: 209 PINATA-SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY--AAMSPRFGGG 379 P + + SP + A + RA TP P +P +PASP AA SP + Sbjct: 122 PESPPRRAASPDYTPASPSRRAASPDYTPESPPRRAASPDYTPASPSRRAAASSPDYTPE 181 Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + Y+P++P A SP YSPSTP +SP Y Sbjct: 182 SPPRRRAASPDYSPSTPPRRAASPD--YSPSTPPRRAASPDY 221 [180][TOP] >UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi RepID=B4JXA6_DROGR Length = 1889 Score = 56.6 bits (135), Expect = 9e-07 Identities = 51/157 (32%), Positives = 65/157 (41%), Gaps = 8/157 (5%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WVNCHTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP Y+ +TP S GY Sbjct: 1597 NYSPSSPNYSPTSPLYTATSPRYASATPNFNAQSTGY 1633 Score = 55.5 bits (132), Expect = 2e-06 Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 12/178 (6%) Frame = +2 Query: 8 AASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARAR 154 A S R A + P GY+P G + +P++A YSP A Sbjct: 1614 ATSPRYASATPNFNAQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNLYSPGNAY 1673 Query: 155 TPGGTAFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 +P + +SP +SP++ + S SP S T +P TP S Sbjct: 1674 SPSSSNYSP---NSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPKYTAVTPSYS 1730 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P SP Y+A SP + G Y+P SP Y SP SP +P SP Y Sbjct: 1731 PTSPNYSA-SPHYSPASPAYSQTGV-KYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786 [181][TOP] >UniRef100_O96452 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae RepID=O96452_ANTLO Length = 1553 Score = 56.6 bits (135), Expect = 9e-07 Identities = 36/97 (37%), Positives = 48/97 (49%) Frame = +2 Query: 215 NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394 +++ FSPI + AAG TP +P +P SP SP Y+ SP Sbjct: 1417 SSSVPFSPIAAHGYAAG-TTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSP---------- 1465 Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 AY+P SPAY TSP YSP++PA + +SP Y Sbjct: 1466 -----AYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1495 Score = 53.9 bits (128), Expect = 6e-06 Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Frame = +2 Query: 182 AYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 A T P +SP + A + SP S A T +P +P SP SP Y+ Sbjct: 1432 AGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1491 Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 SP + + + AY+P SPAY TSP YSP++PA + +SP Y Sbjct: 1492 SPAY--------SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPVY 1530 [182][TOP] >UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YI77_NECH7 Length = 1750 Score = 56.6 bits (135), Expect = 9e-07 Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 17/166 (10%) Frame = +2 Query: 59 GYTPGREGQRTPGRAF-DAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFS 235 GY+P +P D M YA SP+ + P +FSP SP A+ ++S Sbjct: 1573 GYSPTSPNAYSPTSPLVDGGMGGRYATSPSFS--PSSPSFSPTSPMVRPTSP--ASPNYS 1628 Query: 236 PIMSSADAAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406 P + A ++P +P SPA +P SPASP Y+ SP G P+ Sbjct: 1629 PSSPNYSPASPSSPRHYSP-TSPAQFNSPTSPNYSPASPNYSPASPNLHAGGTTSPS--- 1684 Query: 407 GAYAPASPAYMATSP-------------GMGYSPSTPALAVSSPGY 505 Y+PASP + TSP G SP++P+ + +SP + Sbjct: 1685 --YSPASPTWSPTSPEAYSPTSPYQRSPGAQQSPTSPSYSPTSPAF 1728 Score = 54.3 bits (129), Expect = 4e-06 Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 5/150 (3%) Frame = +2 Query: 65 TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPI--NATASFSP 238 TP G G AM+P Y+ +P T+ + + GG+SP NA + SP Sbjct: 1531 TPAGFGNTEYGFGGSTAMSP---YAMRGGTSPFTTSPTSPFGPGGGYSPTSPNAYSPTSP 1587 Query: 239 IMSSADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 ++ AT +P SP SPASP Y+ SP + P Sbjct: 1588 LVDGGMGGRYATSPSFSPSSPSFSPTSPMVRPTSPASPNYSPSSPNYSPASPSSPRH--- 1644 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSP 499 Y+P SPA + YSP++P + +SP Sbjct: 1645 -YSPTSPAQFNSPTSPNYSPASPNYSPASP 1673 [183][TOP] >UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 5 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B19 Length = 1693 Score = 56.2 bits (134), Expect = 1e-06 Identities = 47/145 (32%), Positives = 66/145 (45%) Frame = +2 Query: 71 GREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSS 250 GR G TPG A AM+P+Y+ P A+ P PGG++P + S+SP Sbjct: 1480 GRSGM-TPGAA-GGAMSPSYS--------PTSPAYEPR--SPGGYTP--QSPSYSPT--- 1522 Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430 +P SP +P SP SP Y+ SP +Y+P SP Sbjct: 1523 ------------SPSYSPT---SPSYSPTSPNYSPTSP---------------SYSPTSP 1552 Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505 +Y TSP YSP++P+ + +SP Y Sbjct: 1553 SYSPTSP--SYSPTSPSYSPTSPSY 1575 Score = 53.9 bits (128), Expect = 6e-06 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178 A SP+ + Y P G TP + +P+Y+ YSP +P + S Sbjct: 1492 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1551 Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 P+Y T P +SP + + S SP S + T +P +P SP SP Y Sbjct: 1552 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1610 Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475 + SP + + + +Y+P SP+Y TSP YSP++ Sbjct: 1611 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1670 Query: 476 PALAVSSPGY 505 P+ + +SP Y Sbjct: 1671 PSYSPTSPNY 1680 Score = 53.5 bits (127), Expect = 8e-06 Identities = 34/83 (40%), Positives = 45/83 (54%) Frame = +2 Query: 257 AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436 AAGR+ MTPG + G +P SP SP Y SP GG + +Y+P SP+Y Sbjct: 1478 AAGRSG---MTPGAA-GGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSY 1526 Query: 437 MATSPGMGYSPSTPALAVSSPGY 505 TSP YSP++P + +SP Y Sbjct: 1527 SPTSP--SYSPTSPNYSPTSPSY 1547 [184][TOP] >UniRef100_Q30GY4 CT099 (Fragment) n=1 Tax=Solanum ochranthum RepID=Q30GY4_9SOLN Length = 305 Score = 56.2 bits (134), Expect = 1e-06 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 15/163 (9%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG----GTAFSPAYTGPGGFS------ 208 G P G TP TP+ SPA A G GT +P+ P G + Sbjct: 104 GVAPPSNGSTTPSPTGSPPSTPSGGSSPAAAPPKGSSTPGTPSAPSANAPAGSATPGASS 163 Query: 209 ----PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 P++ A SP S + A+P P + G P MSP + G + +P Sbjct: 164 PNGAPVSTPAGKSPTSSPTPSGSTASP----PAPATGGSVAPAMSPVANGPSTSTPGSSS 219 Query: 377 GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 + GGP+ G+G A + P+ +P + P +A SPG Sbjct: 220 PIAGGPSSGSGIAPSAGGPSGSVIAP----AADGPVVASVSPG 258 [185][TOP] >UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae RepID=B3MQ29_DROAN Length = 1889 Score = 56.2 bits (134), Expect = 1e-06 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP Y+ ++P A ++P + Sbjct: 1597 NYSPSSPNYSPTSP--LYATTSPRYASTTPNF 1626 Score = 55.1 bits (131), Expect = 3e-06 Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151 A S R A + P GY+P G + +P++A YSP A Sbjct: 1613 ATTSPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTSNYQSSPSFAGSGSNMYSPGNA 1672 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325 +P + +SP +SP + S+SP S+ + +P +P SP +P Sbjct: 1673 YSPSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490 +P +P Y+ SP + PA A + Y+P SP Y SP SP +P Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781 Query: 491 SSPGY 505 SP Y Sbjct: 1782 GSPQY 1786 [186][TOP] >UniRef100_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01 RepID=C4VAM1_NOSCE Length = 1612 Score = 56.2 bits (134), Expect = 1e-06 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGRE----GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TG 193 SPA E Y+P G + G A + + +YSP +P + SP+Y T Sbjct: 1427 SPAYLAEESKYSPKLSLFSVGSPSYGSASPSYSPTSPSYSPT---SPSYSPTSPSYSPTS 1483 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1484 PS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1542 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1543 --------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1577 [187][TOP] >UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 17 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B26 Length = 1684 Score = 55.8 bits (133), Expect = 2e-06 Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 25/190 (13%) Frame = +2 Query: 11 ASARIARSPAM-PESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TP 160 A+ R + SPA P S GYTP + +P + +P+Y+ YSP +P Sbjct: 1485 AAGRESTSPAYEPRSPGGYTP-QSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1543 Query: 161 GGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331 + SP+Y T P +SP + + S SP S + T +P +P S Sbjct: 1544 SYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1602 Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475 P SP Y+ SP + + + +Y+P SP+Y TSP YSP++ Sbjct: 1603 PTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1661 Query: 476 PALAVSSPGY 505 P+ + +SP Y Sbjct: 1662 PSYSPTSPNY 1671 [188][TOP] >UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023F34A Length = 1758 Score = 55.8 bits (133), Expect = 2e-06 Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 17/137 (12%) Frame = +2 Query: 119 TPTYAYSPARARTPGG---------TAFSPAYTGPGGFSPI-----NATASFSPIMSSAD 256 +P YSP GG +FSP+ SP+ A+ S+SP S Sbjct: 1582 SPNMGYSPTSPLIDGGGMGRYGPTSPSFSPSSPSFSPTSPMLRPTSPASPSYSPTSPSYS 1641 Query: 257 AAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPAS 427 ++P +P SPA +P SPASP Y+ SP G GGP + +Y+PAS Sbjct: 1642 PTSPSSPRHYSP-TSPAQFNSPTSPSYSPASPNYSPTSPNVHG--AGGPT--SPSYSPAS 1696 Query: 428 PAYMATSPGMGYSPSTP 478 P++ TSP YSP++P Sbjct: 1697 PSWSPTSP-EAYSPTSP 1712 [189][TOP] >UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis RepID=B4L732_DROMO Length = 1889 Score = 55.8 bits (133), Expect = 2e-06 Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 4/153 (2%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPA---RARTPGGTAFSP-AYTGPGGFSPINATA 226 G TP TP + TP Y +SP+ A TPGG +FSP A + G SP Sbjct: 1497 GSTPSMTPPMTP---WVNCHTPRY-FSPSGHVSAMTPGGPSFSPSAASDASGMSP----- 1547 Query: 227 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406 S+SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 1548 SWSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGAS 1595 Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 Y+P+SP Y TSP Y+ ++P A ++P + Sbjct: 1596 PNYSPSSPNYSPTSP--LYASTSPRYASTTPNF 1626 Score = 55.8 bits (133), Expect = 2e-06 Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 18/185 (9%) Frame = +2 Query: 5 AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151 A+ S R A + P GY+P G + +P++A YSP A Sbjct: 1613 ASTSPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNA 1672 Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325 +P + +SP SP S+SP S+ + +P +P SP +P Sbjct: 1673 YSPSSSNYSPNSPSYSPMSP-----SYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721 Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490 +P +P Y+ SP + PA A + Y+P SP Y SP SP +P Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781 Query: 491 SSPGY 505 SP Y Sbjct: 1782 GSPQY 1786 [190][TOP] >UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC 6260 RepID=UPI000151A8B3 Length = 1018 Score = 55.5 bits (132), Expect = 2e-06 Identities = 49/139 (35%), Positives = 63/139 (45%), Gaps = 16/139 (11%) Frame = +2 Query: 137 SPARARTPGGTAFSP-AYTGPGGFSP------------INATASFSPIMSS--ADAAGRA 271 SP+ P G A AY GG +P A FSPI ++ +D AG Sbjct: 721 SPSNMSVPVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGAL 780 Query: 272 TPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 448 T PG SP SP SP Y A SP +GG G + Y+P SP+Y TS Sbjct: 781 TAYGGQPG-SP--------SPTSPFAYGATSPAYGGA-SPGYGVTSPTYSPTSPSYSPTS 830 Query: 449 PGMGYSPSTPALAVSSPGY 505 P YSP++P+ + +SP Y Sbjct: 831 P--SYSPTSPSYSPTSPSY 847 Score = 55.5 bits (132), Expect = 2e-06 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 8/143 (5%) Frame = +2 Query: 101 AFDAAMTP--TYAYSPARARTPGGTAFSPAYTGP--GGFSPINATASF--SPIMSSADAA 262 A D TP Y + + G FSP +T P G + A SP +S A Sbjct: 739 ADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGALTAYGGQPGSPSPTSPFAY 798 Query: 263 GRATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436 G +P G +PG G +P SP SP Y+ SP + + + +Y+P SP+Y Sbjct: 799 GATSPAYGGASPGY---GVTSPTYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSY 847 Query: 437 MATSPGMGYSPSTPALAVSSPGY 505 TSP YSP++P+ + +SP Y Sbjct: 848 SPTSP--SYSPTSPSYSPTSPSY 868 [191][TOP] >UniRef100_Q8FM53 Putative uncharacterized protein n=1 Tax=Corynebacterium efficiens RepID=Q8FM53_COREF Length = 609 Score = 55.5 bits (132), Expect = 2e-06 Identities = 52/150 (34%), Positives = 64/150 (42%), Gaps = 12/150 (8%) Frame = +2 Query: 89 TPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGR 268 TPG A A TPT +P A G A A PG P A +P +++ A G Sbjct: 94 TPGAAVPAPATPTPPAAPGSAIPAPGAATPTAVPTPGSAIPTPGAAVPAPGVATPSAPGA 153 Query: 269 ATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL----GGGPA-----GGAGAYAP 421 + P TPG A TP + +PG AA G GG PA GA AP Sbjct: 154 SIP---TPG---AAMPTPGTATPAPGAAAPGATIPGSAVPAPGGAPAAPGAPAAPGAAAP 207 Query: 422 ASPAYMATSPGM---GYSPSTPALAVSSPG 502 +PA A PG G + TP A+S+PG Sbjct: 208 RTPAPGAAIPGAVAPGSAVPTPG-AISAPG 236 [192][TOP] >UniRef100_B5DKU7 GA22939 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=B5DKU7_DROPS Length = 893 Score = 55.5 bits (132), Expect = 2e-06 Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 4/169 (2%) Frame = +2 Query: 8 AASARIARSPAMPESERGYT--PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181 A S R+PA P + G T PG TP A++ +PA P G+ +P Sbjct: 446 AGSTAAPRTPADPNAPAGSTAAPG-----TPADPNAPAVSTAAPGTPADPNAPAGSTAAP 500 Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-- 355 ++ A +P +A A A PG +PA P +S A+PG A Sbjct: 501 GTPADPNAPAVSTAAPGTPADPNAPAVSTAAPG------TPADPNAPAVSTAAPGTPADP 554 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 +P G PA AP +PA +PG P+ PA++ ++PG Sbjct: 555 NAPPVSTAAPGTPAAPGTPAAPGTPA----APGAPAVPNAPAVSTAAPG 599 [193][TOP] >UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1 Tax=Pichia guilliermondii RepID=RPB1_PICGU Length = 1579 Score = 55.5 bits (132), Expect = 2e-06 Identities = 49/139 (35%), Positives = 63/139 (45%), Gaps = 16/139 (11%) Frame = +2 Query: 137 SPARARTPGGTAFSP-AYTGPGGFSP------------INATASFSPIMSS--ADAAGRA 271 SP+ P G A AY GG +P A FSPI ++ +D AG Sbjct: 1287 SPSNMSVPVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGAL 1346 Query: 272 TPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 448 T PG SP SP SP Y A SP +GG G + Y+P SP+Y TS Sbjct: 1347 TAYGGQPG-SP--------SPTSPFAYGATSPAYGGA-SPGYGVTSPTYSPTSPSYSPTS 1396 Query: 449 PGMGYSPSTPALAVSSPGY 505 P YSP++P+ + +SP Y Sbjct: 1397 P--SYSPTSPSYSPTSPSY 1413 Score = 55.5 bits (132), Expect = 2e-06 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 8/143 (5%) Frame = +2 Query: 101 AFDAAMTP--TYAYSPARARTPGGTAFSPAYTGP--GGFSPINATASF--SPIMSSADAA 262 A D TP Y + + G FSP +T P G + A SP +S A Sbjct: 1305 ADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGALTAYGGQPGSPSPTSPFAY 1364 Query: 263 GRATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436 G +P G +PG G +P SP SP Y+ SP + + + +Y+P SP+Y Sbjct: 1365 GATSPAYGGASPGY---GVTSPTYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSY 1413 Query: 437 MATSPGMGYSPSTPALAVSSPGY 505 TSP YSP++P+ + +SP Y Sbjct: 1414 SPTSP--SYSPTSPSYSPTSPSY 1434 [194][TOP] >UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351 Length = 2085 Score = 55.1 bits (131), Expect = 3e-06 Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 11/140 (7%) Frame = +2 Query: 119 TPTYAYSPARARTPGGTAFSPAY----TGPGGFSPINATAS-FSPIMSSADAAGRATPGR 283 +P+Y+YSP +P + SP+Y T P +SP + + S SP S + T Sbjct: 1680 SPSYSYSPT---SPSYSPTSPSYNYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1735 Query: 284 MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-GPAG----GAGAYAPASPAYMA-T 445 +P S +P SP SPGY+ SP + P+ + AY+P+SP Y + T Sbjct: 1736 YSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSST 1795 Query: 446 SPGMGYSPSTPALAVSSPGY 505 SP YSP++P+ + SP Y Sbjct: 1796 SPT--YSPTSPSYSQPSPSY 1813 Score = 53.5 bits (127), Expect = 8e-06 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 6/160 (3%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAMTP----TYAYSPARARTPGGTA--FSPAYTGPGGF 205 P S GY+P TPG + +P + YSPA + T+ + P Sbjct: 1549 PSSGGGYSPSPP-VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1607 Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385 SPI + S PI S + T +P +P +P S Y+ SP + Sbjct: 1608 SPIYSATS--PIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN---- 1661 Query: 386 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 P + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1662 --PTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSY 1699 [195][TOP] >UniRef100_UPI00005A516D PREDICTED: hypothetical protein XP_855920 n=1 Tax=Canis lupus familiaris RepID=UPI00005A516D Length = 335 Score = 55.1 bits (131), Expect = 3e-06 Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 8/152 (5%) Frame = +2 Query: 65 TPGRE--GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINAT-ASFS 235 TPGR G+ TP R+ + TP + +P+R+ TP + +PA PG +P +T A + Sbjct: 11 TPGRSTPGRSTPSRSTPSRSTPARS-TPSRSTTPARS--TPARNTPGRSTPARSTPARST 67 Query: 236 PIMS--SADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFGGGLGGGPAGGA 406 P S S R+TP R TPGRS R TP R +PA A +P P+ Sbjct: 68 PGRSTPSRSTPSRSTPARSTPGRSTPSRSTPARSTPARSKPARSTPSRSTPTRSTPSRST 127 Query: 407 GAYA-PASPAYMATSPGMGY-SPSTPALAVSS 496 A + PA ++PG S STP + S Sbjct: 128 PARSTPARSTPARSTPGRSTPSRSTPGRSTPS 159 Score = 53.9 bits (128), Expect = 6e-06 Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 14/165 (8%) Frame = +2 Query: 26 ARSPAMPESERGYTPGRE-------GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 ARS + TPGR + TPGR+ + TP+ + +PAR+ TP + +P+ Sbjct: 139 ARSTPGRSTPSRSTPGRSTPSRSTPSRSTPGRSTPSRSTPSRS-TPARS-TPARS--TPS 194 Query: 185 YTGPGGFSPINATASFS-PIMS--SADAAGRATPGRMTPGRSPAGRFTP-RMSPA--SPG 346 + P +P +T S S P S S R+TP R TP RS R TP R +PA P Sbjct: 195 RSTPARSTPSRSTPSRSTPARSTPSRSTPSRSTPSRSTPSRSTPARSTPSRSTPARTRPL 254 Query: 347 YAAMSPRFGG-GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 478 A +P GG GGG G A P +P A P SP++P Sbjct: 255 EAPSAPAGGGPACGGGRCGEARERCPRAPG-QARRP----SPASP 294 [196][TOP] >UniRef100_Q5YNA3 Putative membrane protein n=1 Tax=Nocardia farcinica RepID=Q5YNA3_NOCFA Length = 1126 Score = 55.1 bits (131), Expect = 3e-06 Identities = 52/167 (31%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Frame = +2 Query: 23 IARSPAMPES-----ERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187 +A P P + + G PGR G +P +A A PA G PA Sbjct: 797 VAPDPTRPRAHPQPGQEGARPGRPGPASPFQAGSAFQAVPSVDQPATGPKQPGHPGKPA- 855 Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS--PASPGYAAMS 361 GP G SS GR P R PGRS P S P PG AA + Sbjct: 856 -GPSG-------------QSSVPGLGRPLPSRPQPGRSAPAEPQPGPSAQPPHPGGAA-A 900 Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502 P+ GGG P GA P +P P +P PA V PG Sbjct: 901 PKAGGG---APLPGARPAPPRAPGASVGEPTRPQAPPRPARPVGPPG 944 [197][TOP] >UniRef100_Q0JJP4 Os01g0726700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0JJP4_ORYSJ Length = 662 Score = 55.1 bits (131), Expect = 3e-06 Identities = 56/193 (29%), Positives = 73/193 (37%), Gaps = 27/193 (13%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181 D S SP P GYTP + + TP +P TP + Sbjct: 232 DTPPSPSSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGT 291 Query: 182 AYTGPGG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 + T PGG + P + P S+D + TPG G SP+ TP +P SP Sbjct: 292 SPTTPGGSYYPPTPSIGDVPPSPSSDTSP-TTPG----GGSPS---TPCDTPPSPSSGTS 343 Query: 359 SPRFGGGL----------------GGGPAG-GAGAYAPASPAYMA---------TSPGMG 460 GGG G P+ G+G Y+P++P T+PG G Sbjct: 344 PTTPGGGYYPPTPSVGDVPPSPASGTSPSTPGSGGYSPSTPCSAPPSPSSGTSPTTPGGG 403 Query: 461 YSPSTPALAVSSP 499 YSPSTP A SP Sbjct: 404 YSPSTPCNAPPSP 416 [198][TOP] >UniRef100_B9EZH8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9EZH8_ORYSJ Length = 650 Score = 55.1 bits (131), Expect = 3e-06 Identities = 56/193 (29%), Positives = 73/193 (37%), Gaps = 27/193 (13%) Frame = +2 Query: 2 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181 D S SP P GYTP + + TP +P TP + Sbjct: 220 DTPPSPSSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGT 279 Query: 182 AYTGPGG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358 + T PGG + P + P S+D + TPG G SP+ TP +P SP Sbjct: 280 SPTTPGGSYYPPTPSIGDVPPSPSSDTSP-TTPG----GGSPS---TPCDTPPSPSSGTS 331 Query: 359 SPRFGGGL----------------GGGPAG-GAGAYAPASPAYMA---------TSPGMG 460 GGG G P+ G+G Y+P++P T+PG G Sbjct: 332 PTTPGGGYYPPTPSVGDVPPSPASGTSPSTPGSGGYSPSTPCSAPPSPSSGTSPTTPGGG 391 Query: 461 YSPSTPALAVSSP 499 YSPSTP A SP Sbjct: 392 YSPSTPCNAPPSP 404 [199][TOP] >UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster subgroup RepID=Q1WKU0_DROYA Length = 766 Score = 55.1 bits (131), Expect = 3e-06 Identities = 49/150 (32%), Positives = 66/150 (44%), Gaps = 3/150 (2%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229 G TP TP + TP Y P A TPGG +FSP A + G SP S Sbjct: 639 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 690 Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 +SP A ++P P SP + P SP Y+ SP + P G + Sbjct: 691 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 738 Query: 410 AYAPASPAYMATSPGMGYSPSTPALAVSSP 499 Y+P+SP Y TSP Y+ ++P A ++P Sbjct: 739 NYSPSSPNYSPTSP--LYASASPRYASTTP 766 [200][TOP] >UniRef100_UPI0001A2C6C2 pygopus homolog 2 n=1 Tax=Danio rerio RepID=UPI0001A2C6C2 Length = 533 Score = 54.7 bits (130), Expect = 3e-06 Identities = 42/126 (33%), Positives = 50/126 (39%), Gaps = 11/126 (8%) Frame = +2 Query: 158 PGGTAFSPAY-TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334 PGG F P+ G GG+ M G PGR R P G TP P Sbjct: 72 PGGATFLPSPGAGGGGYGGPGRMGGGMGFMGGPGGPGSGQPGR----RPPFGPPTPNTGP 127 Query: 335 ASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--------ATSPGMGYSPS-TPAL 484 P G+ M P FGGG GGG GG G + P P+ PG G++P +P Sbjct: 128 HHPLGFGGM-PGFGGG-GGGGGGGGGGFPPGGPSQFNMPPNFSPPMHPGQGFNPMLSPGA 185 Query: 485 AVSSPG 502 PG Sbjct: 186 MGGGPG 191 [201][TOP] >UniRef100_UPI0000DC19F8 UPI0000DC19F8 related cluster n=1 Tax=Rattus norvegicus RepID=UPI0000DC19F8 Length = 417 Score = 54.7 bits (130), Expect = 3e-06 Identities = 61/179 (34%), Positives = 79/179 (44%), Gaps = 21/179 (11%) Frame = +2 Query: 29 RSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGGF 205 R+P P +PGR +PGRA ++P A SP RA GT P G Sbjct: 39 RAPVSP-GRAPVSPGRRAPVSPGRA---PVSPGRAPVSPGRAPVSPGTV--PVSPGRAPV 92 Query: 206 SPINATASFSPIMSSADAAGRA---------TPGR--MTPGRSPA--GRF--TPRMSPAS 340 SP A SP + + GRA +PGR ++PGR+P GR +P +P S Sbjct: 93 SP--GRAPVSPGERAPVSPGRAPVSPGRAPVSPGRAPVSPGRAPVSPGRVPVSPGRAPVS 150 Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-----GYSPSTPALAVSSPG 502 PG A +SP G A + AP SP + SPG G +P +P A SPG Sbjct: 151 PGRAPVSP--------GRAPVSPGRAPVSPGTVPVSPGTVPVSPGRAPVSPGRAPVSPG 201 [202][TOP] >UniRef100_Q1L8T6 Novel protein similar to vertebrate pygopus homolog 2 (Drosophila) (PYGO2) n=1 Tax=Danio rerio RepID=Q1L8T6_DANRE Length = 571 Score = 54.7 bits (130), Expect = 3e-06 Identities = 42/126 (33%), Positives = 50/126 (39%), Gaps = 11/126 (8%) Frame = +2 Query: 158 PGGTAFSPAY-TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334 PGG F P+ G GG+ M G PGR R P G TP P Sbjct: 72 PGGATFLPSPGAGGGGYGGPGRMGGGMGFMGGPGGPGSGQPGR----RPPFGPPTPNTGP 127 Query: 335 ASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--------ATSPGMGYSPS-TPAL 484 P G+ M P FGGG GGG GG G + P P+ PG G++P +P Sbjct: 128 HHPLGFGGM-PGFGGG-GGGGGGGGGGFPPGGPSQFNMPPNFSPPMHPGQGFNPMLSPGA 185 Query: 485 AVSSPG 502 PG Sbjct: 186 MGGGPG 191 [203][TOP] >UniRef100_B4V7K0 DNA polymerase III subunits gamma and tau n=1 Tax=Streptomyces sp. Mg1 RepID=B4V7K0_9ACTO Length = 753 Score = 54.7 bits (130), Expect = 3e-06 Identities = 57/166 (34%), Positives = 69/166 (41%), Gaps = 16/166 (9%) Frame = +2 Query: 8 AASARIARSPAMPESERGYTPGREGQRT----PGRAFDAAMT------PTYAYSPARART 157 AA+A +A PA + GY PG E PG AA P + PA A Sbjct: 398 AAAAALAVPPAGAPA-MGYVPGPEAHGMAPAGPGGGVAAARAAVRGAGPEESAPPAPAAA 456 Query: 158 PGGTAFSPA-YTGPGGFSPINATASFSPIMSSADA---AGRATPGRMTPGRSPAGRFTPR 325 P A +PA P +P A A +P + A A A A PG PG G + Sbjct: 457 PAPVAQAPAPVAAPAPVAPEPAPAPVAPPAAEAPAPASAPGAWPGAAKPGSGAPGAWPGA 516 Query: 326 MSPASPGYAAMSPRFGGGLG-GGPA-GGAGAYAPASPAYMATSPGM 457 +PA+P A G G PA A A APA+PA A SPGM Sbjct: 517 AAPAAPAAGAWPSTAAPGTGPAAPAPAPAPAPAPAAPAPAAPSPGM 562 [204][TOP] >UniRef100_Q75A34 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Eremothecium gossypii RepID=RPB1_ASHGO Length = 1745 Score = 54.7 bits (130), Expect = 3e-06 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SPA + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1549 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1604 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ SP Sbjct: 1605 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1664 YSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1706 Score = 54.3 bits (129), Expect = 4e-06 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196 A SP +PG +PG +PT AYSP +P + SP+Y T P Sbjct: 1521 ATSPFSGYGNGPTSPGFGDVSSPG------FSPTSPAYSPT---SPSYSPTSPSYSPTSP 1571 Query: 197 GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373 +SP + + S SP S + T +P +P SP SP Y+ SP + Sbjct: 1572 S-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1629 Query: 374 GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1630 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1664 [205][TOP] >UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 16 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B25 Length = 1752 Score = 54.3 bits (129), Expect = 4e-06 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1535 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1590 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P +P SP SP Y+ P Sbjct: 1591 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPN 1649 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499 + + +Y+P SP+Y TSP YSPS+P+ + +SP Sbjct: 1650 Y--------TPTSPSYSPTSPSYSPTSPNYTYSPSSPSYSPTSP 1685 Score = 53.5 bits (127), Expect = 8e-06 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 10/168 (5%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P ++ +P+Y+ YSP +P + SP+Y T Sbjct: 1556 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1611 Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367 P +SP + + S SP S + T +P R +P SP SP Y+ SP Sbjct: 1612 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPN 1670 Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST--PALAVSSPGY 505 + Y+P+SP+Y TSP YSP++ P + +SP Y Sbjct: 1671 Y-------------TYSPSSPSYSPTSPNPKYSPTSPNPTYSPTSPKY 1705 [206][TOP] >UniRef100_B0JZI5 Pygo2 protein n=1 Tax=Danio rerio RepID=B0JZI5_DANRE Length = 561 Score = 54.3 bits (129), Expect = 4e-06 Identities = 42/126 (33%), Positives = 50/126 (39%), Gaps = 11/126 (8%) Frame = +2 Query: 158 PGGTAFSPAY-TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334 PGG F P+ G GG+ M G PGR R P G TP P Sbjct: 101 PGGATFLPSPGAGGGGYGGPGRMGGGMGFMGGPGGPGGGQPGR----RPPFGPPTPNTGP 156 Query: 335 ASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--------ATSPGMGYSPS-TPAL 484 P G+ M P FGGG GGG GG G + P P+ PG G++P +P Sbjct: 157 HHPLGFGGM-PGFGGG-GGGGGGGGGGFPPGGPSQFNMPPNFSPPMHPGQGFNPMLSPGA 214 Query: 485 AVSSPG 502 PG Sbjct: 215 MGGGPG 220 [207][TOP] >UniRef100_B9PMD7 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii RepID=B9PMD7_TOXGO Length = 1892 Score = 54.3 bits (129), Expect = 4e-06 Identities = 52/186 (27%), Positives = 74/186 (39%), Gaps = 28/186 (15%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR----TPGGTAFSPAYT--G 193 SP+ P+S G A D ++P S R R +P SP+Y+ Sbjct: 1633 SPSSPQSAYFQNDGSSS------AVDMVISPGGVGSDGRGRGGSYSPTSPTLSPSYSPSS 1686 Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP------GYAA 355 P +SP + ++SP +SA + PG GR+P F+P +P SP Y+ Sbjct: 1687 PPSYSP--TSPAYSP--TSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSP 1742 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSP----------------GMGYSPSTPALA 487 SP + + AY+P SP Y TSP G G P +P+ Sbjct: 1743 TSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPSFT 1802 Query: 488 VSSPGY 505 V SP Y Sbjct: 1803 VQSPRY 1808 [208][TOP] >UniRef100_B6KEC6 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii ME49 RepID=B6KEC6_TOXGO Length = 1892 Score = 54.3 bits (129), Expect = 4e-06 Identities = 52/186 (27%), Positives = 74/186 (39%), Gaps = 28/186 (15%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR----TPGGTAFSPAYT--G 193 SP+ P+S G A D ++P S R R +P SP+Y+ Sbjct: 1633 SPSSPQSAYFQNDGSSS------AVDMVISPGGVGSDGRGRGGSYSPTSPTLSPSYSPSA 1686 Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP------GYAA 355 P +SP + ++SP +SA + PG GR+P F+P +P SP Y+ Sbjct: 1687 PPSYSP--TSPAYSP--TSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSP 1742 Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSP----------------GMGYSPSTPALA 487 SP + + AY+P SP Y TSP G G P +P+ Sbjct: 1743 TSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPSFT 1802 Query: 488 VSSPGY 505 V SP Y Sbjct: 1803 VQSPRY 1808 [209][TOP] >UniRef100_A4RMP1 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea RepID=A4RMP1_MAGGR Length = 1757 Score = 54.3 bits (129), Expect = 4e-06 Identities = 47/142 (33%), Positives = 64/142 (45%), Gaps = 12/142 (8%) Frame = +2 Query: 113 AMTPTYAYSPARARTPGGTA-FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT 289 +M P + + R +P T+ SP G G +SP + A +SP D GR G + Sbjct: 1550 SMNPYGSGTSPRPTSPFSTSPTSPFSAGYGSYSPTSPMAGYSPTSPMMDG-GRY--GASS 1606 Query: 290 PGRSPAGRFTPRMSPASP----------GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM 439 P SP+ +P P SP GY+ SP + G P GG Y+P SPA Sbjct: 1607 PSFSPS---SPSFQPTSPIMRHGAGDSMGYSPTSPTYQPG---SPTGGDNHYSPTSPAQF 1660 Query: 440 ATSPGMG-YSPSTPALAVSSPG 502 SP YSP++P+ SPG Sbjct: 1661 GASPTSPLYSPASPSF---SPG 1679 [210][TOP] >UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium discoideum RepID=RPB1_DICDI Length = 1727 Score = 54.3 bits (129), Expect = 4e-06 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190 SP+ + Y+P +P F + +P+Y+ YSP +P + SP+Y T Sbjct: 1578 SPSYSPTSPSYSPTSPSY-SPTSPFYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1633 Query: 191 GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + S+SP S +P SP +P SP SP Y+ SP Sbjct: 1634 SPS-YSP--TSPSYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSP-- 1677 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +Y+P SP+Y +SP YSPS+P+ + SSP Y Sbjct: 1678 -------------SYSPTSPSYSPSSP--SYSPSSPSYSPSSPSY 1707 [211][TOP] >UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 14 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B23 Length = 1653 Score = 53.9 bits (128), Expect = 6e-06 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178 A SP+ + Y P G TP + +P+Y+ YSP +P + S Sbjct: 1452 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1511 Query: 179 PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349 P+Y T P +SP + + S SP S + T +P +P SP SP Y Sbjct: 1512 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1570 Query: 350 AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475 + SP + + + +Y+P SP+Y TSP YSP++ Sbjct: 1571 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1630 Query: 476 PALAVSSPGY 505 P+ + +SP Y Sbjct: 1631 PSYSPTSPNY 1640 [212][TOP] >UniRef100_Q89X06 Blr0521 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89X06_BRAJA Length = 745 Score = 53.9 bits (128), Expect = 6e-06 Identities = 56/181 (30%), Positives = 69/181 (38%), Gaps = 19/181 (10%) Frame = +2 Query: 8 AASARIARSPAMPESERGY-TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184 A +A PA P + G P TP A A PT +PA TPG Sbjct: 195 ATPTPVAPPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTA--TPAPGSTPGAPPAGRP 252 Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364 P G P + A+ SP A A TP P+GR P +PA PG A +P Sbjct: 253 GAPPPGVRPGSPPAAGSPPAPGATPAPTTTPAPGGTATPPSGRPGPASTPA-PGAATPAP 311 Query: 365 ---------------RFGGGLGGGPAGG---AGAYAPASPAYMATSPGMGYSPSTPALAV 490 R G G GP GG AGA A +PA + G+ P+ PA A Sbjct: 312 TATPAPGGALTPPPGRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLPARPAAPAGAA 371 Query: 491 S 493 + Sbjct: 372 A 372 [213][TOP] >UniRef100_Q9BIU8 Flagelliform silk protein (Fragment) n=1 Tax=Argiope trifasciata RepID=Q9BIU8_ARGTR Length = 1002 Score = 53.9 bits (128), Expect = 6e-06 Identities = 44/137 (32%), Positives = 49/137 (35%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINAT 223 P G+ PG G PG A Y P G F P GPGG P A Sbjct: 731 PGGAGGFGPGGAGGFGPGGAGGFGPGGAGGYGPGGVGPGGAGGFGPGGVGPGGSGPGGAG 790 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 P+ D + PG P G A PG A P GGG G GP GG Sbjct: 791 GE-GPVTVDVDVSVGG-----APGGGPGG--------AGPGGAGFGP--GGGAGFGPGGG 834 Query: 404 AGAYAPASPAYMATSPG 454 AG + P A + PG Sbjct: 835 AG-FGPGGAAGGPSGPG 850 Score = 53.5 bits (127), Expect = 8e-06 Identities = 44/137 (32%), Positives = 48/137 (35%) Frame = +2 Query: 44 PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINAT 223 P G+ PG G PG A Y P G F P GPGG P A Sbjct: 463 PGGAGGFGPGGAGGFGPGGAGGFGPAGAGGYGPGGVGPGGAGGFGPGGVGPGGSGPGGAG 522 Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403 P+ D + PG P G A PG A P GGG G GP GG Sbjct: 523 GE-GPVTVDVDVSVGG-----APGGGPGG--------AGPGGAGFGP--GGGAGFGPGGG 566 Query: 404 AGAYAPASPAYMATSPG 454 AG + P A PG Sbjct: 567 AG-FGPGGAAGGPGGPG 582 [214][TOP] >UniRef100_O96446 DNA-directed RNA polymerase n=1 Tax=Vairimorpha necatrix RepID=O96446_9MICR Length = 1605 Score = 53.9 bits (128), Expect = 6e-06 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 2/145 (1%) Frame = +2 Query: 77 EGQR-TPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS-FSPIMSS 250 EG R P + + +PTY+ + + +P +SP T P +SP + T S SP S Sbjct: 1456 EGNRYAPKTSLYSPTSPTYSPT-SPTYSPTSPTYSP--TSPT-YSPTSPTYSPTSPTYSP 1511 Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430 + T +P +P SP SP Y+ SP + + + +Y+P SP Sbjct: 1512 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSP 1563 Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505 +Y TSP YSP++P+ + +SP Y Sbjct: 1564 SYSPTSP--SYSPTSPSYSPTSPSY 1586 [215][TOP] >UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115 RepID=C4R4Y0_PICPG Length = 1743 Score = 53.9 bits (128), Expect = 6e-06 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Frame = +2 Query: 233 SPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406 SP ++ +PG +PG +P +PR SP SPGY+ SP + + + Sbjct: 1523 SPYQPTSPGLSATSPGFAPTSPGFAPT---SPRYSPTSPGYSPTSPSY--------SPTS 1571 Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 +Y+P SP+Y TSP YSP++P+ + +SP Y Sbjct: 1572 PSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1602 [216][TOP] >UniRef100_UPI0000E48096 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48096 Length = 2055 Score = 53.5 bits (127), Expect = 8e-06 Identities = 48/144 (33%), Positives = 61/144 (42%), Gaps = 6/144 (4%) Frame = +2 Query: 68 PGREGQRTPGRA---FDAAMTPTYAYSP-ARARTPGGTAFSPAYTGPGGFSPINATASFS 235 P R G P RA + A P +P A A P F+PA P +P A S Sbjct: 816 PSRPGYNPPARAPAPYPPARGPVPRPAPRAPAAPPRAPGFAPAPNAPSPHNPDQRYAGGS 875 Query: 236 PIMSSADAAGRATPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412 +PG PG +P P +P +PGYA + PR G P G Sbjct: 876 SGSEHNIPGYAPSPGAPGAPGYAP-----PPPAPRAPGYAPLPPRRAAP-GFAPPG---- 925 Query: 413 YAPASPAYMATS-PGMGYSPSTPA 481 +AP +P A S PG+GY+PS PA Sbjct: 926 FAPPAPRQFAPSAPGVGYAPSAPA 949 [217][TOP] >UniRef100_UPI0000EB0AC6 Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2) (180 kDa bullous pemphigoid antigen 2) n=1 Tax=Canis lupus familiaris RepID=UPI0000EB0AC6 Length = 1471 Score = 53.5 bits (127), Expect = 8e-06 Identities = 49/182 (26%), Positives = 66/182 (36%), Gaps = 28/182 (15%) Frame = -3 Query: 483 KAGVDGEYPIPGEVAM*AGEAGAYAPAPPAGP----PPSPPPKRGLI--AA*PG--EAGD 328 + G GE PG + G + P PP P PP PP G + A PG E D Sbjct: 792 RPGAKGEPGAPGRIMTSEGSSTITVPGPPGPPGAMGPPGPPGAPGPVGPAGLPGQQEGVD 851 Query: 327 IRGVKRPAGLRPGVIRPGVARPAASADDMMGENEAVALMGLN------------------ 202 +RG P G PG P ++ P + + A+ +G + Sbjct: 852 LRGPPGPPG-PPGPPGPSISGPPGPCTGFLARSLALQSLGGSFSSPGSLLSNSETYFSGP 910 Query: 201 --PPGPVYAGENAVPPGVRARAGEYA*VGVMAASKARPGVRWPSRPGV*PRSDSGMAGDR 28 PPGP + PPG R GE G + + G+ PG PR G GD Sbjct: 911 PGPPGPPGPKGDQGPPGPRGHQGEQGPPGFSGSGSSSLGLNLQGPPG--PRGPKGDKGDP 968 Query: 27 AI 22 + Sbjct: 969 GV 970 [218][TOP] >UniRef100_Q9RKR9 Putative multi-domain regulatory protein n=1 Tax=Streptomyces coelicolor RepID=Q9RKR9_STRCO Length = 1334 Score = 53.5 bits (127), Expect = 8e-06 Identities = 57/181 (31%), Positives = 75/181 (41%), Gaps = 19/181 (10%) Frame = +2 Query: 14 SARIARSPAMPESER-------GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA 172 S R A + A E+ R G PG E + + TPT P R+RTPG T+ Sbjct: 212 SGRTAEALAAYEAVRRLLADRLGTDPGPELRTLHAELLSPSPTPT----PGRSRTPGWTS 267 Query: 173 FSPAYTGPGGFSPIN----ATASFSPIMSSADAAGRA----TPGRMTPGRSPAGRFTPRM 328 +G G S + A A+ P +S A+G A + G PG PA P Sbjct: 268 GPGPASGAGAASGTDVASGAGAASGPDPASGPASGPAVAPGSGGGPAPGWWPAPGTAPGS 327 Query: 329 SPASP----GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496 S A P A +P G G A AG APA P +PG Y+P T +A ++ Sbjct: 328 STAPPHDTASAADTAPAPGPTSAPGTAPAAGTAAPA-PGTAGPAPGTSYAPGTAPVAGTT 386 Query: 497 P 499 P Sbjct: 387 P 387 [219][TOP] >UniRef100_Q4KQZ4 CT099 (Fragment) n=1 Tax=Solanum habrochaites RepID=Q4KQZ4_SOLHA Length = 305 Score = 53.5 bits (127), Expect = 8e-06 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA-SFS 235 G P G TP +P A +P+R + GT +P+ P G SP A++ + + Sbjct: 104 GVAPPSNGSTTPPSTPSGGSSP--AAAPSRGSSTPGTPSAPSANAPAGSSPPGASSPNGA 161 Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFT--PRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 P+ + A + ++P SP T P MSP + G ++ +P L GGP+ G+G Sbjct: 162 PVSTPAGKSPTSSPTPSGSTASPPSPATVVPAMSPVANGPSSSTPGSSSPLAGGPSSGSG 221 Query: 410 ----AYAPASPAYMATSPG 454 A P+ A T+ G Sbjct: 222 IAPSADGPSGSAIAPTADG 240 [220][TOP] >UniRef100_Q4KQZ0 CT099 (Fragment) n=1 Tax=Solanum habrochaites RepID=Q4KQZ0_SOLHA Length = 305 Score = 53.5 bits (127), Expect = 8e-06 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%) Frame = +2 Query: 59 GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA-SFS 235 G P G TP +P A +P+R + GT +P+ P G SP A++ + + Sbjct: 104 GVAPPSNGSTTPPSTPSGGSSP--AAAPSRGSSTPGTPSAPSANAPAGSSPPGASSPNGA 161 Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFT--PRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409 P+ + A + ++P SP T P MSP + G ++ +P L GGP+ G+G Sbjct: 162 PVSTPAGKSPTSSPTPSGSTASPPSPATVVPAMSPVANGPSSSTPGSSSPLAGGPSSGSG 221 Query: 410 ----AYAPASPAYMATSPG 454 A P+ A T+ G Sbjct: 222 IAPSADGPSGSAIAPTADG 240 [221][TOP] >UniRef100_A4RRF2 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RRF2_OSTLU Length = 1000 Score = 53.5 bits (127), Expect = 8e-06 Identities = 55/175 (31%), Positives = 71/175 (40%), Gaps = 15/175 (8%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQ--RTPG----RAFDAAMTP--------TYAYSPARARTPG 163 A A P TPG G TP AF AA TP T A+ A A +P Sbjct: 326 ATPSASPFGAAPSTPGAFGAPASTPAFGASGAFGAAPTPSAFGAPSSTPAFGAAPASSPF 385 Query: 164 GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343 G A PA P G +P +P + AA + G S G +P++P Sbjct: 386 GAA--PAAASPFGAAPSTPAFGAAPTPGAFGAAPSSGGGLFGAAPSTGGGLFGASAPSTP 443 Query: 344 G-YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 G + A +P GG PAGG AP++PA G +TP A S+PG+ Sbjct: 444 GAFGASTPAPGGFGAPKPAGGLFGAAPSTPATGGLF-GASTGATTPGFAGSTPGF 497 [222][TOP] >UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis macrandra RepID=Q9C428_9FUNG Length = 1603 Score = 53.5 bits (127), Expect = 8e-06 Identities = 60/186 (32%), Positives = 82/186 (44%), Gaps = 26/186 (13%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG 202 ARS YT G +TP A M+P+ A + PA +PGG Y G Sbjct: 1405 ARSATGGLYTNSYTADFSGGKTPDHR--APMSPSGAQFYPA---SPGGAP----YENYPG 1455 Query: 203 FSPINATASFSPI-MSSADAAGRATPGRMTPGRSPAG---RFTPRM-------SPASPGY 349 P+ FSPI + S GR TPG M+ G+SP R PR+ SP+SP Y Sbjct: 1456 DQPM-----FSPIGVDSGRDTGRWTPG-MSGGQSPYASTHRCDPRLMNKRSLRSPSSPVY 1509 Query: 350 AAMSPRFG--------------GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487 + FG G + + +Y+P SP+Y TSP YSP++P+ + Sbjct: 1510 SMWLASFGLLQPFLIVRCFGVISPTSPGYSPTSPSYSPTSPSYTPTSP--SYSPTSPSYS 1567 Query: 488 VSSPGY 505 +SP Y Sbjct: 1568 PTSPSY 1573 [223][TOP] >UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii RepID=A1YIA7_ISSOR Length = 1647 Score = 53.5 bits (127), Expect = 8e-06 Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 3/163 (1%) Frame = +2 Query: 26 ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAFSPAYTGPG 199 A SP+ + Y P A+ +PT AYSP A +P A+SP T P Sbjct: 1458 ATSPSYGPTSPSYGPTSPSYSPTSPAY----SPTSPAYSPTSPAYSPTSPAYSP--TSPA 1511 Query: 200 GFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376 +SP + A + SP S + T +P +P SP SP Y+ SP++ Sbjct: 1512 -YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQY-- 1568 Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + Y+P SP Y TSP YSP++P + +SP Y Sbjct: 1569 ------SPTSPQYSPTSPQYSPTSP--QYSPTSPQYSPTSPQY 1603 Score = 53.5 bits (127), Expect = 8e-06 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 7/165 (4%) Frame = +2 Query: 32 SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193 SPA + Y+P A+ A +PT +YSP +P + SP+Y T Sbjct: 1495 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT---SPSYSPTSPSYSPTS 1551 Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370 P +SP + + S SP S T + +P +P+ SP SP Y+ SP++ Sbjct: 1552 PS-YSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY 1610 Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505 + + Y+P SP Y TSP YSP++P + +SP Y Sbjct: 1611 --------SPTSPQYSPTSPQYSPTSP--QYSPTSPQYSPTSPSY 1645