AU193515 ( PFL046f01_r )

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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
            RepID=O04142_PORYE
          Length = 1685

 Score =  342 bits (876), Expect = 1e-92
 Identities = 167/168 (99%), Positives = 167/168 (99%)
 Frame = +2

Query: 2    DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
            DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP
Sbjct: 1441 DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 1500

Query: 182  AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
            AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS
Sbjct: 1501 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 1560

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            PRFGGGL GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY
Sbjct: 1561 PRFGGGLCGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 1608

[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
            RepID=O09451_9FLOR
          Length = 1732

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 72/191 (37%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
 Frame = +2

Query: 2    DAAASARIARSPAMPESERG---YTPGREGQRTPGR--AFDAAMTPTYAYSPARARTPGG 166
            DA AS  + +SPA   +  G   ++P R G  TPGR  AFDA  TP   YSPA   TP  
Sbjct: 1416 DAQASMGLGQSPAGNRTYEGASVWSPAR-GDATPGRKKAFDARATPGLLYSPAAWGTPLR 1474

Query: 167  TAFSPAYTGPGGFSPINATASFSPI-MSSADAAGRATPGRMTPGRSPAGRFTPRMSP--- 334
                         SP    A+FSP  M+   A G    G +TP +SP   +T  +SP   
Sbjct: 1475 PRTEQGLDQQ--MSPSADGAAFSPTPMTPGGAGGGGGMGGLTPLQSPGREYTVPLSPGGG 1532

Query: 335  ------------ASPGYAAMSPRFG--GGLGGGPAGGAGAYAPASPAYMATSPGMG-YSP 469
                        +SPGYA    R    GG G    G +G +APASPAY  TSPG   Y+ 
Sbjct: 1533 GTSPFYSQSPYASSPGYAQSPGRMQSPGGAGAYGIGSSGTFAPASPAYRPTSPGPSPYAA 1592

Query: 470  STPALAVSSPG 502
             +PA    SPG
Sbjct: 1593 QSPA---QSPG 1600

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 59/178 (33%), Positives = 77/178 (43%), Gaps = 20/178 (11%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            +PA P     Y P   G  +P  A   A +P   YSP ++R     A   A +  GG   
Sbjct: 1574 APASP----AYRPTSPGP-SPYAAQSPAQSPGVQYSPDKSRVQVQRAPPTAPSAAGG--- 1625

Query: 212  INATASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
              A+ S+SP   S +  G A+PG      +PG SP+       SP+SP  AA SP     
Sbjct: 1626 -GASRSYSPSSPSYNGRGAASPGANYVAASPGYSPSS--PGAYSPSSP--AAFSP----- 1675

Query: 380  LGGGPAGGAGAYAPASPAYMAT----------------SPGMGYSPSTPALAVSSPGY 505
                PA  AG Y+P++PAY A                 S   G SPS+P  + SSP Y
Sbjct: 1676 --SSPA--AGGYSPSTPAYTANAAANQYSYARSPRYPPSYANGTSPSSPQYSPSSPQY 1729

[3][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1A
          Length = 1767

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
 Frame = +2

Query: 119  TPTY-AYSPARARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP 292
            TP Y A+SP    TPG   FSP A +   GFSP   + ++SP   S  + G ++P   +P
Sbjct: 1501 TPAYGAWSPRSGMTPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSP 1559

Query: 293  GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 472
            G    G  +P  SP SP Y   SP       GG    + +Y+P SP+Y  TSP   YSP+
Sbjct: 1560 GELSCGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPT 1610

Query: 473  TPALAVSSPGY 505
            +P  + +SP Y
Sbjct: 1611 SPNYSPTSPSY 1621

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP        +P  +  S
Sbjct: 1566 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1625

Query: 179  PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
            P+Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y
Sbjct: 1626 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1684

Query: 350  AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
            +  SP +              +  + +Y+P SP+Y  TSP               YSP++
Sbjct: 1685 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1744

Query: 476  PALAVSSPGY 505
            P+ + +SP Y
Sbjct: 1745 PSYSPTSPNY 1754

[4][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
          Length = 1943

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 58/168 (34%), Positives = 78/168 (46%), Gaps = 34/168 (20%)
 Frame = +2

Query: 104  FDAAMTPTY--AYSPARAR--TPGGTAFSPAYTGPGGFSPINATASFSPIMS-------S 250
            ++A  TP Y  A+SPA     TPGG  FSP+    GGFSP     S+SP          S
Sbjct: 1582 WNAGTTPAYGAAWSPATGSGMTPGGAGFSPSGHSEGGFSPYGGGGSWSPGSPGGSLGGMS 1641

Query: 251  ADAAGRATP----------GRMTPGRSPA-------------GRFTPRMSPASPGYAAMS 361
               AG  +P          G  +PG SP              G  +PR SP SP Y+  S
Sbjct: 1642 PSGAGAYSPAASDYGSGLEGLSSPGYSPTSPASPYGASSPAYGVMSPRYSPTSPSYSPTS 1701

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP  GYSP++P+ + +SP Y
Sbjct: 1702 PSY-SPTSPSYSPTSPSYSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1746

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 57/171 (33%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPA--------RARTPGGTAFSP 181
            A SPA  +    Y  G EG  +PG +  +  +P  A SPA           +P  +  SP
Sbjct: 1647 AYSPAASD----YGSGLEGLSSPGYSPTSPASPYGASSPAYGVMSPRYSPTSPSYSPTSP 1702

Query: 182  AY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
            +Y  T P  +SP + + S  SP  S        T    +P        +P  SPASPGY+
Sbjct: 1703 SYSPTSP-SYSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPASPGYS 1761

Query: 353  AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              SPR+        +  +  Y+P SPAY  TSP   YSP++P+ + +SPGY
Sbjct: 1762 PSSPRY-SPTSPAYSPTSPTYSPTSPAYSPTSP--TYSPTSPSYSPASPGY 1809

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAYTGP 196
            SP    +   Y+P   G  +P     +  +PTY     AYSP+   +P  +  SP Y   
Sbjct: 1792 SPTYSPTSPSYSPASPGY-SPSSPRYSPTSPTYSPTSPAYSPS---SPQYSPSSPQY--- 1844

Query: 197  GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG- 373
               SP  ++  ++P   + DA+   +P   +P  SP+   +PR SP+SP Y+  SP++  
Sbjct: 1845 ---SP--SSPQYTPSSPAGDASPAYSP--TSPQYSPS---SPRYSPSSPQYSPTSPQYSP 1894

Query: 374  ---GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               GG G   +  +  Y+P+SP Y  +SP   YSPS+P  + SSP Y
Sbjct: 1895 SSPGGAGTSYSRSSPQYSPSSPQYSPSSP--QYSPSSPQYSPSSPQY 1939

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P   G      ++    +P+Y+     YSPA   +PG +  SP Y  T
Sbjct: 1715 SPSYSPTSPSYSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPA---SPGYSPSSPRYSPT 1770

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + T S  SP  S             +P  SP    +P  SPASPGY+  SPR
Sbjct: 1771 SPA-YSPTSPTYSPTSPAYSPT-----------SPTYSPT---SPSYSPASPGYSPSSPR 1815

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  +  Y+P SPAY  +SP   YSPS+P  + SSP Y
Sbjct: 1816 Y--------SPTSPTYSPTSPAYSPSSP--QYSPSSPQYSPSSPQY 1851

[5][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSP 181
            +AAS   A SP M    +G+TPG     +P  A  + MTP  A +SP+      G  FSP
Sbjct: 1508 SAASPSNAMSPQMTPWNQGHTPGYGDGWSP--ALGSGMTPGAASFSPSAHSDASG--FSP 1563

Query: 182  AYTGPGGFSPINATASFSPIMSSADAAGRATPGR--MTPGRSPAGRF----TPRMSPASP 343
            A    GGFSP  +      + S   +    +P R  M+P  SP        +P MSP+SP
Sbjct: 1564 A----GGFSPAWSPQDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQSPAMSPSSP 1619

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            GY+  SP +     G        Y+P SP+Y  TSP  GYSP++P+ + +SP Y
Sbjct: 1620 GYSPTSPLYSPTSPG--------YSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1663

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1660 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1715

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SPI S    +   T    +P        +P+ SP SP Y+  SP 
Sbjct: 1716 SPS-YSPTSPSYSPTSPIYSPTSPSYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPS 1774

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  +  Y+P SPAY   SP   YSPS+P+ + +SP Y
Sbjct: 1775 Y--------SPSSPQYSPTSPAYSPQSP--SYSPSSPSYSPTSPKY 1810

[6][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 59/168 (35%), Positives = 81/168 (48%), Gaps = 1/168 (0%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSP 181
            +AAS   A SP M    +G+TPG     +P  A  + MTP  A +SP+      G  FSP
Sbjct: 1501 SAASPSNAMSPQMTPWNQGHTPGYGDGWSP--ALGSGMTPGAASFSPSAHSDASG--FSP 1556

Query: 182  AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
            A    GGFSP  +     P  S    A       M+P        +P  SP SPGY+  S
Sbjct: 1557 A----GGFSPAWSPQDSIPSYSPNSPAFNPQSPAMSPSSPGYSPTSPLYSPTSPGYSPTS 1612

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +      G +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1613 PSY-SPTSPGYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1657

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1633 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1688

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SPI S    +   T    +P        +P+ SP SP Y+  SP 
Sbjct: 1689 SPS-YSPTSPSYSPTSPIYSPTSPSYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPS 1747

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  +  Y+P SPAY   SP   YSPS+P+ + +SP Y
Sbjct: 1748 Y--------SPSSPQYSPTSPAYSPQSP--SYSPSSPSYSPTSPKY 1783

[7][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48672
          Length = 1913

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 61/176 (34%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGR-AFDAAMTPTYAYSPA-------RARTP 160
            A  S   + SP M    +G TP      TPG   F  A + +  +SPA       + ++P
Sbjct: 1504 AMGSPSQSMSPQMTPWNQGATPMHGSGMTPGGPGFSPANSESTGFSPAYSPAWSPQPQSP 1563

Query: 161  GGTAFSPAYTGPGG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
            G  A SP    P G  SP     S+SP   S   A  ATP   +PG SP    +P  SP 
Sbjct: 1564 GSPANSPYIPSPAGPMSP-----SYSPASPSYLPASPATP--QSPGYSPT---SPSYSPT 1613

Query: 338  SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            SPGY+  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1614 SPGYSPASPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1666

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 54/156 (34%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
 Frame = +2

Query: 92   PGRAFDAAMTPTYAYSP-------------ARARTPGGTAFSPAYTGPGGFSPINATASF 232
            PG  F A  +P+ + SP                 TPGG  FSPA +   GFSP     ++
Sbjct: 1498 PGMLFGAMGSPSQSMSPQMTPWNQGATPMHGSGMTPGGPGFSPANSESTGFSP-----AY 1552

Query: 233  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
            SP  S    +   +P       SPAG  +P  SPASP Y   SP      G  P   + +
Sbjct: 1553 SPAWSPQPQSP-GSPANSPYIPSPAGPMSPSYSPASPSYLPASPATPQSPGYSPTSPSYS 1611

Query: 413  -----YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 Y+PASP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1612 PTSPGYSPASPSYSPTSP--SYSPTSPSYSPTSPSY 1645

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   S   Y+P          ++ +  +P+Y+     YSP+  + +P   ++SP  T 
Sbjct: 1747 SPSYSPSSPKYSPTSPSYSPTSPSY-SPQSPSYSPGSPSYSPSSPKYSPTSPSYSP--TS 1803

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP +   S  SP  S A  +   T  + +P        +P  SP SP Y+  SP +
Sbjct: 1804 PS-YSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY 1862

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
                    +  +  Y+P+SP Y  TSP G  YSP++P+ + +SP Y
Sbjct: 1863 --------SPTSPKYSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSY 1900

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1663 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1718

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1719 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPS 1777

Query: 368  FGGGLGGGPAGG------AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  G              + +Y+P SP+Y  TSP   +SPS+P  + +SP Y
Sbjct: 1778 YSPGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSP--NFSPSSPTYSPASPSY 1827

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+       Y+PG     +P     +  +P+Y+     YSP     +P    +SPA   
Sbjct: 1768 SPSYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPS 1826

Query: 194  PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
                SP  + +S  P  S        T  + +P        +P+ SP+SP Y+  SP+  
Sbjct: 1827 YSPTSPKYSPSS--PKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSPTSPK-- 1882

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMG 460
               G   +  + +Y+P SP+Y  TSPGMG
Sbjct: 1883 ---GSTYSPTSPSYSPTSPSYSPTSPGMG 1908

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P +    +PG    +  +P Y  SP    +P  +  SP+Y  T P  F
Sbjct: 1761 SPSYSPTSPSYSP-QSPSYSPGSPSYSPSSPKY--SPT---SPSYSPTSPSYSPTSPN-F 1813

Query: 206  SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + T S  SP  S        +  + +P        +P+ SPASP Y+  SP++    
Sbjct: 1814 SPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKY---- 1869

Query: 383  GGGPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSPG 502
                +  +  Y+P SP    Y  TSP   YSP++P+ + +SPG
Sbjct: 1870 ----SPSSPTYSPTSPKGSTYSPTSPS--YSPTSPSYSPTSPG 1906

[8][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
            RepID=Q9BMP3_MONBE
          Length = 1743

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDA---AMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINAT 223
            G++P   G  +PG        A +P  A SP  A +PG  + SP Y  + P G+SP   +
Sbjct: 1459 GFSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSP--TS 1516

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP---RMSPASPGYAAMSPRFGGGLGGGP 394
             S+SP   ++      +PG  +P  SPAG FTP     SP SP Y+  SP  GG      
Sbjct: 1517 PSYSP---TSPGMSPTSPG-FSPA-SPAG-FTPTSPHYSPTSPSYSPTSPNVGGAQSPSY 1570

Query: 395  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
            +  + +Y+P+SPAY A SP   YSP++P+ + +SP
Sbjct: 1571 SPTSPSYSPSSPAYNAQSP--AYSPTSPSYSPTSP 1603

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 58/171 (33%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
 Frame = +2

Query: 65   TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIM 244
            TP  EG  TP       MTP  A SP          F    T  GGFSP+ A A     M
Sbjct: 1425 TPWGEGNATPFGM--GGMTPQNASSPY---------FGAGQTPIGGFSPVVAGAFSPGGM 1473

Query: 245  SSADAAGRATPGRMTPG----------------RSPAG--RFTPRMSPASPGYAAMSPRF 370
             S     ++  G M+PG                 SPAG    +P  SP SPG +  SP F
Sbjct: 1474 LSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSPTSPSYSPTSPGMSPTSPGF 1533

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMG------YSPSTPALAVSSPGY 505
                  G    +  Y+P SP+Y  TSP +G      YSP++P+ + SSP Y
Sbjct: 1534 SPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSPAY 1584

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY---------AYSPARART-PGGTAFSP 181
            SP M  +  G++P      TP     +  +P+Y         A SP+ + T P  +  SP
Sbjct: 1523 SPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSP 1582

Query: 182  AYTGPG-GFSPINATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYA 352
            AY      +SP   + S+SP  +S +     +PG    +PG SP+   +P  SP SP Y+
Sbjct: 1583 AYNAQSPAYSP--TSPSYSP--TSPNVKSPTSPGYSPTSPGYSPS---SPSYSPTSPNYS 1635

Query: 353  AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              SP +        +  +  Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1636 PTSPSY--------SPTSPNYSPTSPSYSPTSP--NYSPTSPSYSPTSPNY 1676

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 20/180 (11%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
            A+SP+   +   Y+P          A+    +P+Y+ +    ++P    +SP  T PG +
Sbjct: 1565 AQSPSYSPTSPSYSPSSPAYNAQSPAYSPT-SPSYSPTSPNVKSPTSPGYSP--TSPG-Y 1620

Query: 206  SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG--- 373
            SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP +    
Sbjct: 1621 SPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTS 1680

Query: 374  ---GGLGGGPAGGAGAYAPASPAYMATSPGM-------------GYSPSTPALAVSSPGY 505
                      +  + +Y+P SP Y  TSP               GYSP++P  + +SPGY
Sbjct: 1681 PSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGY 1740

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 14/163 (8%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A+SPA   +   Y+P     ++P     +  +P Y+     YSP    +P  +  SP+Y 
Sbjct: 1586 AQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPT---SPNYSPTSPSYS 1642

Query: 188  -TGPG------GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
             T P        +SP +   S  SP  S        T    +P        +P  SP SP
Sbjct: 1643 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1702

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 472
             Y+  SP +     G     +  Y+P SP Y  TSP  GYSPS
Sbjct: 1703 NYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSP--GYSPS 1743

[9][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
            RepID=A9V5W6_MONBE
          Length = 1307

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDA---AMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINAT 223
            G++P   G  +PG        A +P  A SP  A +PG  + SP Y  + P G+SP   +
Sbjct: 1023 GFSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSP--TS 1080

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP---RMSPASPGYAAMSPRFGGGLGGGP 394
             S+SP   ++      +PG  +P  SPAG FTP     SP SP Y+  SP  GG      
Sbjct: 1081 PSYSP---TSPGMSPTSPG-FSPA-SPAG-FTPTSPHYSPTSPSYSPTSPNVGGAQSPSY 1134

Query: 395  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
            +  + +Y+P+SPAY A SP   YSP++P+ + +SP
Sbjct: 1135 SPTSPSYSPSSPAYNAQSP--AYSPTSPSYSPTSP 1167

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY---------AYSPARART-PGGTAFSP 181
            SP M  +  G++P      TP     +  +P+Y         A SP+ + T P  +  SP
Sbjct: 1087 SPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSP 1146

Query: 182  AYTGPG-GFSPINATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYA 352
            AY      +SP   + S+SP  +S +     +PG    +PG SP+   +P  SP SP Y+
Sbjct: 1147 AYNAQSPAYSP--TSPSYSP--TSPNVKSPTSPGYSPTSPGYSPS---SPSYSPTSPNYS 1199

Query: 353  AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              SP +        +  +  Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1200 PTSPSY--------SPTSPNYSPTSPSYSPTSP--NYSPTSPSYSPTSPNY 1240

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 20/180 (11%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
            A+SP+   +   Y+P          A+    +P+Y+ +    ++P    +SP  T PG +
Sbjct: 1129 AQSPSYSPTSPSYSPSSPAYNAQSPAYSPT-SPSYSPTSPNVKSPTSPGYSP--TSPG-Y 1184

Query: 206  SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG--- 373
            SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP +    
Sbjct: 1185 SPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTS 1244

Query: 374  ---GGLGGGPAGGAGAYAPASPAYMATSPGM-------------GYSPSTPALAVSSPGY 505
                      +  + +Y+P SP Y  TSP               GYSP++P  + +SPGY
Sbjct: 1245 PSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGY 1304

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
 Frame = +2

Query: 149  ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----GRSPAGRF 316
            A TP G   +  + G GG +P NA++ +         AG+   G  +P      SP G  
Sbjct: 987  AATPWGEGNATPF-GMGGMTPQNASSPYL-------GAGQTPIGGFSPVVAGAFSPGGML 1038

Query: 317  TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPA-YMATSPGMGYSPSTPALAVS 493
            +P     SPG  AMSP  GG +  G    +  Y P+SPA Y  TSP   YSP++P ++ +
Sbjct: 1039 SPGGIAQSPG-GAMSP--GGAMSPGVVSASPFYDPSSPAGYSPTSPS--YSPTSPGMSPT 1093

Query: 494  SPGY 505
            SPG+
Sbjct: 1094 SPGF 1097

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 14/163 (8%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A+SPA   +   Y+P     ++P     +  +P Y+     YSP    +P  +  SP+Y 
Sbjct: 1150 AQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPT---SPNYSPTSPSYS 1206

Query: 188  -TGPG------GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
             T P        +SP +   S  SP  S        T    +P        +P  SP SP
Sbjct: 1207 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1266

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 472
             Y+  SP +     G     +  Y+P SP Y  TSP  GYSPS
Sbjct: 1267 NYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSP--GYSPS 1307

[10][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
            RepID=A7S8F9_NEMVE
          Length = 1929

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPA 184
            AA +  A SP M     G TP      +PG    + MTP  A +SP+ A    G +    
Sbjct: 1503 AAGSPSAMSPQMTPWNMGATPAYMEAWSPGMG--SGMTPGAASFSPSAASDASGMS---- 1556

Query: 185  YTGPGGFSPI-NATASFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGY 349
               PGGFSP   +    SP+     +    +P   +PG SP+       +P MSPASP Y
Sbjct: 1557 ---PGGFSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSPSMSPASPSY 1613

Query: 350  AAMSPRFG-GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +       G +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1614 SPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1664

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1716

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP+SP Y+  SP 
Sbjct: 1717 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPS 1775

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505
            +        +  +  Y+PASP+Y  TSP        YSP++P+ + SSP Y
Sbjct: 1776 YSPQSPSYASPSSPKYSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKY 1826

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 51/161 (31%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   S   Y+P          ++ +  +P Y  SPA   +P  +  SP Y  T P  +
Sbjct: 1759 SPSYSPSSPSYSPSSPSYSPQSPSYASPSSPKY--SPA---SPSYSPTSPKYSPTSPN-Y 1812

Query: 206  SPINATASFSPIMSSADAAGRA-TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP  A+ S+SP          + TP   +P  SPA   +P  SP+SP Y+  SPR     
Sbjct: 1813 SP--ASPSYSPSSPKYSPTSPSYTPA--SPSYSPA---SPSYSPSSPSYSPSSPR----- 1860

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                      Y P SP Y  TSP   YSP++P  + ++P Y
Sbjct: 1861 ----------YTPTSPQYSPTSP--KYSPASPNYSPTTPSY 1889

[11][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2A
          Length = 1896

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 57/152 (37%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPARARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G  P   G  +P    ++   TP Y A+SP    TPG   FSP A +   GFSP      
Sbjct: 1505 GSAPSPMGGISPAMTPWNQGATPAYGAWSPRSGMTPGAAGFSPSAASDASGFSP-----G 1559

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP  S        TPG  +PG SP G  +P  SP SP Y   SP       GG    + 
Sbjct: 1560 YSPAWSP-------TPG--SPG-SPGGAMSPSYSPTSPAYEPRSP-------GGYTPQSP 1602

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1603 SYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1632

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPG-----GTAFSPAYT---------G 193
            G TPG  G  +P  A DA+  +P   YSPA + TPG     G A SP+Y+          
Sbjct: 1537 GMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGGAMSPSYSPTSPAYEPRS 1593

Query: 194  PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
            PGG++P   + S+SP   S            +P  SP    +P  SP SP Y+  SP + 
Sbjct: 1594 PGGYTP--QSPSYSPTSPSYSPT--------SPSYSPT---SPNYSPTSPSYSPTSPSY- 1639

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1640 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1674

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1650 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1705

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P R      +P  SP SP Y+  SP+
Sbjct: 1706 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPK 1764

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +           + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1765 Y--------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1800

[12][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B0A92
          Length = 1714

 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 57/164 (34%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY------------TGPGGFSP 211
            PG     + G  F +A +P    SPA   TP  T  +PAY             G  GFSP
Sbjct: 1468 PGISVAGSTGMFFGSAPSPMSGMSPAM--TPWNTGATPAYGAWSPSVGSGMTPGAAGFSP 1525

Query: 212  INAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFG 373
              A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP   
Sbjct: 1526 SAASDASGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSP--- 1582

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                GG    +  Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1583 ----GGYTPQSPGYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1620

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG          Y  SP  A +P  +  SPAY    PG
Sbjct: 1524 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPG 1583

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   +  +SP                +P  SP    +P  SP SP Y+  SP +   
Sbjct: 1584 GYTP--QSPGYSPT---------------SPSYSPT---SPSYSPTSPSYSPTSPSYSPT 1623

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               GP   + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1624 SPSGPT--SPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPNY 1661

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 19/153 (12%)
 Frame = +2

Query: 104  FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRA 271
            ++   TP Y A+SP+     TPG   FSP A +   GFSP   + ++SP   S  + G A
Sbjct: 1497 WNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPA 1555

Query: 272  TP------GRMTPGRSPAG-RFTPRM----SPASPGYAAMSPRFGGGLGGGPAGGAGAYA 418
            +P      G M+P  SP    + PR     +P SPGY+  SP +        +  + +Y+
Sbjct: 1556 SPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSP-TSPSYSPTSPSYS 1614

Query: 419  PASPAYMATSPG----MGYSPSTPALAVSSPGY 505
            P SP+Y  TSP       YSP++P+ + +SP Y
Sbjct: 1615 PTSPSYSPTSPSGPTSPSYSPTSPSYSPTSPSY 1647

[13][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 65/187 (34%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGR--EGQRTPGRAFDAAMTPTYAY-------SPARART 157
            A   AR  R+  M  +    TP     G  TP  A     TP+Y Y       SP  A  
Sbjct: 1482 AEEDARTPRAGLMSPAHGFDTPRAFDAGSMTPYPATPGQATPSYPYTPIGGQFSPFAASP 1541

Query: 158  PGGTAFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRA--------TPGRM--TPGRSP 304
             G  AFSP  T P   SP    AS F+ + S    AG A        +PG +  +PG SP
Sbjct: 1542 YGDAAFSPTPTSPAYASPYGTAASPFNAMASPYSRAGNAFYSPRSPSSPGGVAASPGYSP 1601

Query: 305  AGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL 484
                +P  SP SP Y+  SP +        +  + AY+P SPAY  TSP   YSP++P  
Sbjct: 1602 T---SPTYSPTSPSYSPTSPSY--------SPTSPAYSPTSPAYSPTSP--TYSPTSPTY 1648

Query: 485  AVSSPGY 505
            + +SP Y
Sbjct: 1649 SPTSPTY 1655

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 51/155 (32%), Positives = 66/155 (42%), Gaps = 31/155 (20%)
 Frame = +2

Query: 134  YSPARARTPGGTAFSPAY---------TGPGGFSPINATAS-FSPIMSSADAAGRATPGR 283
            YSP    +PGG A SP Y         T P  +SP + + S  SP  S    A   T   
Sbjct: 1582 YSPRSPSSPGGVAASPGYSPTSPTYSPTSPS-YSPTSPSYSPTSPAYSPTSPAYSPTSPT 1640

Query: 284  MTPGRSPAGRFTPRMSPASPGYA----AMSPRFGGGLGGGPAG-----GAGAYAPASPAY 436
             +P        +P  SP SP Y+    AMSP   GG+   P+       +  Y+P+SP Y
Sbjct: 1641 YSPTSPTYSPTSPTYSPTSPMYSPSSPAMSPARAGGVSYSPSSPHYSPSSPQYSPSSPHY 1700

Query: 437  MATSPGMG------------YSPSTPALAVSSPGY 505
              +SP               YSPS+PA + SSP Y
Sbjct: 1701 SPSSPHYSPSSPQYSPSSPQYSPSSPAYSPSSPAY 1735

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
 Frame = +2

Query: 2    DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPG 163
            +A  S R   SP    +  GY+P      +P     +  +P+Y     AYSP   A +P 
Sbjct: 1579 NAFYSPRSPSSPGGVAASPGYSP-TSPTYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1637

Query: 164  GTAFSPAYTGPGGFSPINATAS--------FSPIMSSADAAGRATPGRMTPGRSPAGRFT 319
               +SP  T P  +SP + T S         SP MS A A G  +    +P  SP+   +
Sbjct: 1638 SPTYSP--TSPT-YSPTSPTYSPTSPMYSPSSPAMSPARAGG-VSYSPSSPHYSPS---S 1690

Query: 320  PRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
            P+ SP+SP Y+  SP +        +  +  Y+P+SP Y  +SP   YSPS+PA + SSP
Sbjct: 1691 PQYSPSSPHYSPSSPHY--------SPSSPQYSPSSPQYSPSSPA--YSPSSPAYSPSSP 1740

Query: 500  GY 505
             +
Sbjct: 1741 AH 1742

[14][TOP]
>UniRef100_O77165 DNA-directed RNA polymerase (Fragment) n=1 Tax=Breviata anathema
            RepID=O77165_9EUKA
          Length = 1690

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 64/179 (35%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169
            A+ A    SPA   +   Y+P          A+  A +P Y     AYSPA  A +P   
Sbjct: 1509 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1567

Query: 170  AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
            A+SPA       SP  + AS  +SP   +   A  A     +P  SPA   +P  SPASP
Sbjct: 1568 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1623

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGY 505
             Y+  SP +       PA  + AY+PASPAY   SP  G     YSP++PA + +SP Y
Sbjct: 1624 AYSPASPAYS------PA--SPAYSPASPAYSPASPAYGPASPAYSPASPAYSPASPAY 1674

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 63/174 (36%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169
            AA+     SPA   +   Y+P          A+  A +P Y     AYSPA  A +P   
Sbjct: 1502 AAAGYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1560

Query: 170  AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
            A+SPA       SP  + AS  +SP   +   A  A     +P  SPA   +P  SPASP
Sbjct: 1561 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1616

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             Y+  SP +       PA  + AY+PASPAY   SP   YSP++PA   +SP Y
Sbjct: 1617 AYSPASPAYS------PA--SPAYSPASPAYSPASPA--YSPASPAYGPASPAY 1660

 Score = 73.2 bits (178), Expect = 9e-12
 Identities = 63/174 (36%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169
            A+ A    SPA   +   Y+P          A+  A +P Y     AYSPA  A +P   
Sbjct: 1523 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1581

Query: 170  AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
            A+SPA       SP  + AS  +SP   +   A  A     +P  SPA   +P  SPASP
Sbjct: 1582 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1637

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             Y+  SP +       PA  + AY PASPAY   SP   YSP++PA + +SP Y
Sbjct: 1638 AYSPASPAYS------PA--SPAYGPASPAYSPASPA--YSPASPAYSPASPAY 1681

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 62/172 (36%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGT 169
            A+ A    SPA   +   Y+P          A+  A +P Y     AYSPA  A +P   
Sbjct: 1530 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPASPAYSPASPAYSPASP 1588

Query: 170  AFSPAYTGPGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
            A+SPA       SP  + AS  +SP   +   A  A     +P  SPA   +P  SPASP
Sbjct: 1589 AYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASP 1644

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
             Y+  SP +      GPA  + AY+PASPAY   SP   YSP++PA   + P
Sbjct: 1645 AYSPASPAY------GPA--SPAYSPASPAYSPASP--AYSPASPAYDPAEP 1686

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 59/153 (38%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAFSPAYTGPGGFSPINATAS- 229
            GY P       PG    A  +P   AYSPA  A +P   A+SPA       SP  + AS 
Sbjct: 1493 GYIP------VPGSPAAAGYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASP 1546

Query: 230  -FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
             +SP   +   A  A     +P  SPA   +P  SPASP Y+  SP +       PA  +
Sbjct: 1547 AYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA--S 1594

Query: 407  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             AY+PASPAY   SP   YSP++PA + +SP Y
Sbjct: 1595 PAYSPASPAYSPASPA--YSPASPAYSPASPAY 1625

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
 Frame = +2

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYA 352
            P+  GP G+ P+  + + +    ++ A   A+P     +P  SPA   +P  SPASP Y+
Sbjct: 1486 PSSPGPFGYIPVPGSPAAAGYSPASPAYSPASPAYSPASPAYSPA---SPAYSPASPAYS 1542

Query: 353  AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              SP +       PA  + AY+PASPAY   SP   YSP++PA + +SP Y
Sbjct: 1543 PASPAYS------PA--SPAYSPASPAYSPASPA--YSPASPAYSPASPAY 1583

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
 Frame = +2

Query: 119  TPTYAYSPARARTPG---GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT 289
            +P+   SP+     G   G    P  + PG F  I       P+  S  AAG +     +
Sbjct: 1461 SPSVTMSPSGGFGMGMGMGMGDIPVPSSPGPFGYI-------PVPGSPAAAGYSPA---S 1510

Query: 290  PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469
            P  SPA   +P  SPASP Y+  SP +       PA  + AY+PASPAY   SP   YSP
Sbjct: 1511 PAYSPA---SPAYSPASPAYSPASPAYS------PA--SPAYSPASPAYSPASPA--YSP 1557

Query: 470  STPALAVSSPGY 505
            ++PA + +SP Y
Sbjct: 1558 ASPAYSPASPAY 1569

[15][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
            RepID=UPI000186501C
          Length = 1956

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
 Frame = +2

Query: 119  TPTY--AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGR 283
            TP Y  A+SP      TPG   FSP A +   G SP   + ++SP   S  + G A+P  
Sbjct: 1523 TPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYI 1582

Query: 284  MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 463
             +PG    G  +P  SPASP Y   SP       GG    +  Y+P SP+Y  TSP   Y
Sbjct: 1583 PSPG----GPMSPSYSPASPAYMPRSP-------GGMTPQSPGYSPTSPSYSPTSP--SY 1629

Query: 464  SPSTPALAVSSPGY 505
            SP++P  + +SP Y
Sbjct: 1630 SPASPNYSPTSPSY 1643

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAF----SPAYTGPGG-FSPINAT 223
            G TPG  G  +P  A DA+      YSPA + TPG        SP    PGG  SP    
Sbjct: 1537 GMTPGAAGF-SPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYIPSPGGPMSP---- 1591

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
             S+SP   ++ A    +PG MTP        +P  SP SP Y+  SP +        +  
Sbjct: 1592 -SYSP---ASPAYMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNY--------SPT 1639

Query: 404  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1640 SPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 10/168 (5%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG-FS 208
            SP+   +   Y+P          ++  + +P+Y+ S     +P  T  SP Y+     +S
Sbjct: 1773 SPSYSPTSPSYSPSSPNYSPQSPSYSPS-SPSYSPSSPNPSSPKYTPTSPKYSPSSPKYS 1831

Query: 209  PINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            P +   S  SP  S + A         +P        +P+ SPASP Y   SP++     
Sbjct: 1832 PSSPKYSPTSPTYSPSSAKYSPASPSYSPSTPKYTPTSPKYSPASPTYTPTSPKY-SPTS 1890

Query: 386  GGPAGGAGAYAPASPAYMATSP--------GMGYSPSTPALAVSSPGY 505
                     Y+P SP Y  TSP        G  YSP+TP  + +SP Y
Sbjct: 1891 PSYTPDTPKYSPTSPKYSPTSPTYSPTSPKGSTYSPTTPGYSPASPTY 1938

[16][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
            RepID=C3ZES3_BRAFL
          Length = 1934

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
 Frame = +2

Query: 119  TPTY--AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGR 283
            TP Y  A+SP      TPG   FSP A +   G SP   + ++SP   S  + G A+P  
Sbjct: 1523 TPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYI 1582

Query: 284  MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 463
             +PG    G  +P  SPASP Y   SP       GG    +  Y+P SP+Y  TSP   Y
Sbjct: 1583 PSPG----GPMSPSYSPASPAYMPRSP-------GGMTPQSPGYSPTSPSYSPTSP--SY 1629

Query: 464  SPSTPALAVSSPGY 505
            SP++P  + +SP Y
Sbjct: 1630 SPASPNYSPTSPSY 1643

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAF----SPAYTGPGG-FSPINAT 223
            G TPG  G  +P  A DA+      YSPA + TPG        SP    PGG  SP    
Sbjct: 1537 GMTPGAAGF-SPSAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYIPSPGGPMSP---- 1591

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
             S+SP   ++ A    +PG MTP        +P  SP SP Y+  SP +        +  
Sbjct: 1592 -SYSP---ASPAYMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNY--------SPT 1639

Query: 404  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1640 SPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AA  +  A S A   S  GY+P      TPG          Y  SP    +P  +  SPA
Sbjct: 1542 AAGFSPSAASDASGMSPAGYSPA--WSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPA 1599

Query: 185  YT--GPGGFSPIN-----ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340
            Y    PGG +P +      + S+SP   S + A+   +P   +P  SP    +P  SP S
Sbjct: 1600 YMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNYSP--TSPSYSPT---SPSYSPTS 1654

Query: 341  PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P Y+  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1655 PSYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1699

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 10/177 (5%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAF----DAAMTPTYA-YSPA-RARTPGG 166
            +AAS     SPA        TPG  G   P   +       M+P+Y+  SPA   R+PGG
Sbjct: 1548 SAASDASGMSPAGYSPAWSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPRSPGG 1607

Query: 167  -TAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
             T  SP Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP
Sbjct: 1608 MTPQSPGYSPTSPS-YSPTSPSYSPASPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666

Query: 335  ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             SP Y+  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1667 TSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1720

[17][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
            RepID=Q1E2G9_COCIM
          Length = 1750

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 18/186 (9%)
 Frame = +2

Query: 2    DAAASARIARSP-------AMPESERGYTP-GREGQRTPGRAFDAAMTPTYA-YSPARAR 154
            D AA+   + SP       + P+ +  ++P G+ G  TP   F     P +  +SPA AR
Sbjct: 1503 DGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPA-GFTEYQPPGFGGFSPAGAR 1561

Query: 155  TPGG-TAFSPAYTGPG--GFSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTP 322
            +PGG +  SP  T P   G+SP +  +  SP MS        +P  MT PG SPA   +P
Sbjct: 1562 SPGGYSPTSPFNTSPTSPGYSPSSGYSPTSPGMSIT------SPRYMTSPGFSPA---SP 1612

Query: 323  RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALA 487
              +P SP Y+  SP    G G   +  + +Y+P SP +  TSP        +SP++PA +
Sbjct: 1613 TFAPTSPAYSPTSP----GYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFS 1668

Query: 488  VSSPGY 505
             +SP Y
Sbjct: 1669 PTSPSY 1674

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 53/171 (30%), Positives = 73/171 (42%), Gaps = 9/171 (5%)
 Frame = +2

Query: 14   SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187
            S R   SP    +   + P           +  A +PT  +YSP    +PG +  SP+Y 
Sbjct: 1598 SPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1654

Query: 188  -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
             T P  FSP  A+ +FSP   S      A  G      SP    +P+ +P SPG++  SP
Sbjct: 1655 PTSPS-FSP--ASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSP 1711

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMA--TSPG----MGYSPSTPALAVSSP 499
                           AY+P SP +    TSPG     GYSP++P    +SP
Sbjct: 1712 E--------------AYSPTSPNFAGSPTSPGGPTSPGYSPTSPTFNPTSP 1748

[18][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
            SOWgp RepID=C5PAJ4_COCP7
          Length = 1746

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 18/186 (9%)
 Frame = +2

Query: 2    DAAASARIARSP-------AMPESERGYTP-GREGQRTPGRAFDAAMTPTYA-YSPARAR 154
            D AA+   + SP       + P+ +  ++P G+ G  TP   F     P +  +SPA AR
Sbjct: 1503 DGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPA-GFTEYQPPGFGGFSPAGAR 1561

Query: 155  TPGG-TAFSPAYTGPG--GFSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTP 322
            +PGG +  SP  T P   G+SP +  +  SP MS        +P  MT PG SPA   +P
Sbjct: 1562 SPGGYSPTSPFNTSPTSPGYSPSSGYSPTSPGMSIT------SPRYMTSPGFSPA---SP 1612

Query: 323  RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALA 487
              +P SP Y+  SP    G G   +  + +Y+P SP +  TSP        +SP++PA +
Sbjct: 1613 TFAPTSPAYSPTSP----GYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFS 1668

Query: 488  VSSPGY 505
             +SP Y
Sbjct: 1669 PTSPSY 1674

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 51/164 (31%), Positives = 70/164 (42%), Gaps = 9/164 (5%)
 Frame = +2

Query: 14   SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187
            S R   SP    +   + P           +  A +PT  +YSP    +PG +  SP+Y 
Sbjct: 1598 SPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1654

Query: 188  -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
             T P  FSP  A+ +FSP   S      A  G      SP    +P+ +P SPG++  SP
Sbjct: 1655 PTSPS-FSP--ASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSP 1711

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMA--TSPG----MGYSPSTP 478
                           AY+P SP +    TSPG     GYSP++P
Sbjct: 1712 E--------------AYSPTSPNFAGSPTSPGGPTSPGYSPTSP 1741

[19][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48671
          Length = 1921

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 3/157 (1%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFSPAYTGPGG-FSPI 214
            P    G TPG  G  +P  +     +P Y  A+SP + ++PG  A SP    P G  SP 
Sbjct: 1533 PMMGSGMTPGGPGF-SPANSESTGFSPAYSPAWSP-QPQSPGSPANSPYIPSPAGPMSP- 1589

Query: 215  NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394
                S+SP   S   A  ATP   +PG SP    +P  SP SPGY+  SP +        
Sbjct: 1590 ----SYSPASPSYLPASPATP--QSPGYSPT---SPSYSPTSPGYSPASPSYSP-TSPSY 1639

Query: 395  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1640 SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1674

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 26/164 (15%)
 Frame = +2

Query: 92   PGRAFDAAMTPTYAYSP---------------------ARARTPGGTAFSPAYTGPGGFS 208
            PG  F A  +P+ + SP                         TPGG  FSPA +   GFS
Sbjct: 1498 PGMLFGAMGSPSQSMSPQMTPWNQGATPMHGASWSPMMGSGMTPGGPGFSPANSESTGFS 1557

Query: 209  PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
            P     ++SP  S    +   +P       SPAG  +P  SPASP Y   SP      G 
Sbjct: 1558 P-----AYSPAWSPQPQSP-GSPANSPYIPSPAGPMSPSYSPASPSYLPASPATPQSPGY 1611

Query: 389  GPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             P   + +     Y+PASP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1612 SPTSPSYSPTSPGYSPASPSYSPTSP--SYSPTSPSYSPTSPSY 1653

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   S   Y+P          ++ +  +P+Y+     YSP+  + +P   ++SP  T 
Sbjct: 1755 SPSYSPSSPKYSPTSPSYSPTSPSY-SPQSPSYSPGSPSYSPSSPKYSPTSPSYSP--TS 1811

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP +   S  SP  S A  +   T  + +P        +P  SP SP Y+  SP +
Sbjct: 1812 PS-YSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY 1870

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
                    +  +  Y+P+SP Y  TSP G  YSP++P+ + +SP Y
Sbjct: 1871 --------SPTSPKYSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSY 1908

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1671 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1726

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1727 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPS 1785

Query: 368  FGGGLGGGPAGG------AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  G              + +Y+P SP+Y  TSP   +SPS+P  + +SP Y
Sbjct: 1786 YSPGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSP--NFSPSSPTYSPASPSY 1835

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+       Y+PG     +P     +  +P+Y+     YSP     +P    +SPA   
Sbjct: 1776 SPSYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPS 1834

Query: 194  PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
                SP  + +S  P  S        T  + +P        +P+ SP+SP Y+  SP+  
Sbjct: 1835 YSPTSPKYSPSS--PKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSPTSPK-- 1890

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMG 460
               G   +  + +Y+P SP+Y  TSPGMG
Sbjct: 1891 ---GSTYSPTSPSYSPTSPSYSPTSPGMG 1916

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P +    +PG    +  +P Y  SP    +P  +  SP+Y  T P  F
Sbjct: 1769 SPSYSPTSPSYSP-QSPSYSPGSPSYSPSSPKY--SPT---SPSYSPTSPSYSPTSPN-F 1821

Query: 206  SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + T S  SP  S        +  + +P        +P+ SPASP Y+  SP++    
Sbjct: 1822 SPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKY---- 1877

Query: 383  GGGPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSPG 502
                +  +  Y+P SP    Y  TSP   YSP++P+ + +SPG
Sbjct: 1878 ----SPSSPTYSPTSPKGSTYSPTSPS--YSPTSPSYSPTSPG 1914

[20][TOP]
>UniRef100_P46804 Spidroin-2 (Fragment) n=1 Tax=Nephila clavipes RepID=SPD2_NEPCL
          Length = 627

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 55/166 (33%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
 Frame = +2

Query: 8   AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
           +ASA  A +    +   GY PG++G   PG A  AA         A A  PGG  + P  
Sbjct: 351 SASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAA--------AAAAGPGG--YGPGQ 400

Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSP 364
            GPGG++P     S     S+A AA  A PG   PG+   G + P +  P+ PG AA + 
Sbjct: 401 QGPGGYAPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGYAPGQQGPSGPGSAAAAA 460

Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
               G GG      G   P   A  A++   GY P+    A   PG
Sbjct: 461 AAAAGPGGYGPAQQGPSGPGIAASAASAGPGGYGPAQQGPAGYGPG 506

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 55/178 (30%), Positives = 74/178 (41%), Gaps = 13/178 (7%)
 Frame = +2

Query: 8   AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
           +A+A  A  P   +   GY PG++G   PG A  AA         A A  PGG  + P  
Sbjct: 245 SAAAAAAAGPGQ-QGPGGYGPGQQGPSGPGSAAAAA---------AAAAGPGG--YGPGQ 292

Query: 188 TGPGGFSPINATASFSPIMSSADAAG------------RATPGRMTPGRSPAGRFTPRMS 331
            GPGG+ P     S +   ++A AAG            +  PG   PG+   G + P  +
Sbjct: 293 QGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQQGPGGYGPGQQGPGGYGPGSA 352

Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            A+   A    +  GG G G  G +G   A A+ A  A  PG GY P        +PG
Sbjct: 353 SAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAAGPG-GYGPGQQGPGGYAPG 409

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 61/190 (32%), Positives = 74/190 (38%), Gaps = 24/190 (12%)
 Frame = +2

Query: 5   AAASARIARSPAMP---------ESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART 157
           AAA+A  A  P            +   GY PG++G   PG A  AA     A S    + 
Sbjct: 164 AAAAAAAASGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAA----AASGPGQQG 219

Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
           PGG  + P   GPGG+ P     S      SA AA  A PG+  PG    G    +  P+
Sbjct: 220 PGG--YGPGQQGPGGYGPGQQGLSGP---GSAAAAAAAGPGQQGPGGYGPG----QQGPS 270

Query: 338 SPGYAAMSPRFGGGLGG-GPA-GGAGAYAP---------ASPAYMATSPGM----GYSPS 472
            PG AA +     G GG GP   G G Y P         ++ A  A  PG     GY P 
Sbjct: 271 GPGSAAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPG 330

Query: 473 TPALAVSSPG 502
                   PG
Sbjct: 331 QQGPGGYGPG 340

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 56/195 (28%), Positives = 79/195 (40%), Gaps = 29/195 (14%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGRE-----------------GQRTPGRAFDAAMTPTYA 133
           AAA++  A + +  +   GY PG++                 GQ+ P     AA     A
Sbjct: 112 AAAASAAASAESGQQGPGGYGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAA 171

Query: 134 YSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------ 295
             P + + PGG  + P   GPGG+ P     S  P  ++A AA  + PG+  PG      
Sbjct: 172 SGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPS-GPGSAAAAAAAASGPGQQGPGGYGPGQ 227

Query: 296 RSPAGRFTPRMSPASPGYAAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGM 457
           + P G    +   + PG AA +   G      GG G G  G +G  + A+ A  A  PG 
Sbjct: 228 QGPGGYGPGQQGLSGPGSAAAAAAAGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAAGPG- 286

Query: 458 GYSPSTPALAVSSPG 502
           GY P         PG
Sbjct: 287 GYGPGQQGPGGYGPG 301

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 47/162 (29%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTY--------AYSPARARTPGGTAFSPAYTGPGGFSPI 214
           GY  G++G   PG A  A+   +          Y P + + PGG  + P   GPGG+ P 
Sbjct: 98  GYGQGQQGPSGPGSAAAASAAASAESGQQGPGGYGPGQ-QGPGG--YGPGQQGPGGYGPG 154

Query: 215 NATASFSPIMSSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPGYAAMSPRFGG 376
               S  P  ++A AA  + PG+  PG      + P G    +  P+ PG AA +     
Sbjct: 155 QQGPS-GPGSAAAAAAAASGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAS 213

Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
           G G    GG G        Y     G+    S  A A + PG
Sbjct: 214 GPGQQGPGGYGPGQQGPGGYGPGQQGLSGPGSAAAAAAAGPG 255

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 67/215 (31%), Positives = 88/215 (40%), Gaps = 51/215 (23%)
 Frame = +2

Query: 5   AAASARIARSPAM----PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARART 157
           AAA+A  A  P       +   GY PG++G    G A  AA           Y P + + 
Sbjct: 275 AAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQ-QG 333

Query: 158 PGGTAFSPAYTGPGGFSPINATAS-------------FSP---------IMSSADAAGRA 271
           PGG  + P   GPGG+ P +A+A+             + P           S+A AA  A
Sbjct: 334 PGG--YGPGQQGPGGYGPGSASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAA 391

Query: 272 TPGRMTPGRSPAGRFTP-RMSPASPGYA-AMSPRFGGGLGG-GPA-GGAGAYAP------ 421
            PG   PG+   G + P +  P+ PG A A +     G GG GP   G G YAP      
Sbjct: 392 GPGGYGPGQQGPGGYAPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGYAPGQQGPS 451

Query: 422 -----ASPAYMATSPGMGY-----SPSTPALAVSS 496
                A+ A  A  PG GY      PS P +A S+
Sbjct: 452 GPGSAAAAAAAAAGPG-GYGPAQQGPSGPGIAASA 485

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 53/174 (30%), Positives = 63/174 (36%), Gaps = 26/174 (14%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPIN------A 220
           GY PG++G   PG A  AA         A A  PGG  + P   GPGG+ P         
Sbjct: 13  GYGPGQQGPSGPGSAAAAAA--------AAAAGPGG--YGPGQQGPGGYGPGQQGPGRYG 62

Query: 221 TASFSPIMSSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
                P    + AA  A  G+  PG      + P G    +  P+ PG AA +       
Sbjct: 63  PGQQGPSGPGSAAAAAAGSGQQGPGGYGPRQQGPGGYGQGQQGPSGPGSAAAASAAASAE 122

Query: 383 GG--GPAG------GAGAYAPASPAYMATSPGMGYSPSTP------ALAVSSPG 502
            G  GP G      G G Y P         PG    PS P      A A S PG
Sbjct: 123 SGQQGPGGYGPGQQGPGGYGPGQQGPGGYGPGQ-QGPSGPGSAAAAAAAASGPG 175

[21][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
            RepID=UPI0000546D90
          Length = 1972

 Score = 73.2 bits (178), Expect = 9e-12
 Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
 Frame = +2

Query: 104  FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRA 271
            ++   TP Y A+SP+     TPG   FSP A +   GFSP   + ++SP   S  + G A
Sbjct: 1517 WNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPA 1575

Query: 272  TPGRMTPGRSPA--GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445
            +P   +PG      G  +P  SP SP Y   SP      GGG    +  Y+P SP+Y  T
Sbjct: 1576 SPYIPSPGYITLHFGALSPNYSPTSPAYEPRSP------GGGYTPQSPGYSPTSPSYSPT 1629

Query: 446  SPGMGYSPSTPALAVSSPGY 505
            SP   YSP++P  + +SP Y
Sbjct: 1630 SP--SYSPTSPNYSPTSPSY 1647

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 56/152 (36%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP------INATAS 229
            PG       G  F +A +P    SPA   TP  T  +PAY   G +SP          A 
Sbjct: 1488 PGISVAGPTGMFFGSAPSPMSGMSPAM--TPWNTGATPAY---GAWSPSVGSGMTPGAAG 1542

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            FSP  +S DA+G       +PG SPA   TP  SP SPG A+      G +       + 
Sbjct: 1543 FSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPASPYIPSPGYITLHFGALSP 1594

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             Y+P SPAY   SPG GY+P +P  + +SP Y
Sbjct: 1595 NYSPTSPAYEPRSPGGGYTPQSPGYSPTSPSY 1626

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
 Frame = +2

Query: 65   TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY---TGPGGFSPINATAS-F 232
            TPG  G  +PG A     +P Y      A +P  +  SPAY   +  GG++P +   S  
Sbjct: 1565 TPGSPG--SPGPASPYIPSPGYITLHFGALSPNYSPTSPAYEPRSPGGGYTPQSPGYSPT 1622

Query: 233  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
            SP  S    +   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1623 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1674

Query: 413  YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1675 YSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1703

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP YT  
Sbjct: 1707 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPNYTPT 1762

Query: 197  G-GFSPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
               +SP   + S+SP   S +  +   TP   +P  SP    +P  SP SP Y+  SPR+
Sbjct: 1763 SPSYSP--TSPSYSPTSPSYSPTSPNYTP--TSPNYSPT---SPSYSPTSPSYSPSSPRY 1815

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                       + +Y+P+SP+Y  TSP   Y+P++P+ + SSP Y
Sbjct: 1816 -TPQSPTYTPSSPSYSPSSPSYSPTSP--KYTPTSPSYSPSSPEY 1857

[22][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 67/192 (34%), Positives = 94/192 (48%), Gaps = 24/192 (12%)
 Frame = +2

Query: 2    DAAASARIARSPAMPES---ERGYTPGRE--GQRTPGRAFDAAMTPTYA-----YSPARA 151
            D A  +  A SP +  S    RGY+P       R+PG  FD A +P+Y+     YS A  
Sbjct: 1515 DGATFSPYAESPFVDGSFSPHRGYSPSSPPYSPRSPG--FDYAASPSYSPASPSYSAASP 1572

Query: 152  R----TPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATP---GRMTPGRS 301
            R    +PG +A SP+Y  T P  +SP + + S  SP  S    A   T       +PG S
Sbjct: 1573 RYSPTSPGYSASSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPGYS 1631

Query: 302  PAGRF----TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469
            P        +PR SP SP Y+  SP +      G +  + +Y+P SP+Y  TSP   YSP
Sbjct: 1632 PTSPSYSPTSPRYSPTSPSYSPTSPSY-SPTSPGYSPTSPSYSPTSPSYSPTSP--SYSP 1688

Query: 470  STPALAVSSPGY 505
            ++P+ + +SP Y
Sbjct: 1689 TSPSYSPTSPSY 1700

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 52/148 (35%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
 Frame = +2

Query: 83   QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGP---GGFSPIN----ATASFSPI 241
            Q TP   +D  MTP    SP       G  FSP    P   G FSP      ++  +SP 
Sbjct: 1492 QMTP---YDTHMTPALQQSPGGTPFLDGATFSPYAESPFVDGSFSPHRGYSPSSPPYSPR 1548

Query: 242  MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 421
                D A   +    +P  S A   +PR SP SPGY+A SP +        +  + +Y+P
Sbjct: 1549 SPGFDYAASPSYSPASPSYSAA---SPRYSPTSPGYSASSPSY-SPTSPSYSPTSPSYSP 1604

Query: 422  ASPAYMATSPGMGYSPSTPALAVSSPGY 505
             SP+Y  TSP   YSP++P+ + +SPGY
Sbjct: 1605 TSPSYSPTSP--AYSPTSPSYSPTSPGY 1630

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 9/167 (5%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1669 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSCSPTSPSYSPT 1724

Query: 191  GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
             P  +SP   + S+SP   S   A   T    +P  SP+   +P  SP+SP Y+  SP +
Sbjct: 1725 SPS-YSP--TSPSYSPSSPSCSPAS-PTYSPSSPSYSPS---SPSYSPSSPSYSPSSPSY 1777

Query: 371  GGGLGGGPAGGAGAYAPASPAYM--ATSPGMGYSPSTPALAVSSPGY 505
                       A  Y+P SP +   A SP   YSP++PA   SSP Y
Sbjct: 1778 SPSSPQYTPASAN-YSPPSPLHSSPAYSPTSQYSPTSPAYGASSPAY 1823

[23][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF12
          Length = 1970

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
             ++SP   S  + G ++P   +PG    G  +P  SP SP Y   SP       GG    
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPTSPAYEPRSP-------GGYTPQ 1611

Query: 404  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1612 SPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 200  GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
            G++P + + S  SP  S    +   T    +P        +P  SP SP Y+  SP +  
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1664

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                  +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1665 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1699

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P      TP     +  +P+Y  SP    +P  T  SP Y  T P  +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790

Query: 206  SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP   + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++    
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874

[24][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
            uvarioides RepID=Q9AXN1_9FLOR
          Length = 1712

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 66/189 (34%), Positives = 84/189 (44%), Gaps = 28/189 (14%)
 Frame = +2

Query: 23   IARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202
            +A SPA  ++  G     +G+ TPG       TP +A  P+R    G T   P+      
Sbjct: 1439 MAWSPARGDATPGLHRPMDGRTTPG--LRTGYTPMWA--PSRM---GSTRGGPSAFNVQQ 1491

Query: 203  FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP---------ASPGYA- 352
            FSP    ASFSP  ++    G+      TP +SP G + P MSP         ASPG A 
Sbjct: 1492 FSPSADEASFSPSPATPGNFGQ-NANAYTPLQSPRGDYMPPMSPGGAASPYVSASPGRAS 1550

Query: 353  --AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG----------------YSPSTP 478
              A SP +    G   AG    +APASPAY  TSP  G                YSP++P
Sbjct: 1551 PYATSPAYPQSPGSYNAGSG--FAPASPAYKVTSPAPGGYGGAYQSPARSPGAQYSPTSP 1608

Query: 479  ALAVSSPGY 505
            A   +SPGY
Sbjct: 1609 AFTPTSPGY 1617

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMP----ESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGT- 169
            +A  A  + SPA P    ++   YTP     ++P   +   M+P  A SP  + +PG   
Sbjct: 1495 SADEASFSPSPATPGNFGQNANAYTP----LQSPRGDYMPPMSPGGAASPYVSASPGRAS 1550

Query: 170  --AFSPAYT-GPGGFSPINATASFSPIMS-SADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
              A SPAY   PG ++  +  A  SP    ++ A G       +P RSP  ++    SP 
Sbjct: 1551 PYATSPAYPQSPGSYNAGSGFAPASPAYKVTSPAPGGYGGAYQSPARSPGAQY----SPT 1606

Query: 338  SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY-MATSP----GMGYSPSTP 478
            SP +   SP +    G G   G GAY+P  P+Y  A SP    G+ YSP +P
Sbjct: 1607 SPAFTPTSPGYSSATGPG-RPGTGAYSPTGPSYNAAASPGYQSGINYSPGSP 1657

[25][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
            RepID=A4S3M0_OSTLU
          Length = 1646

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 57/166 (34%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
 Frame = +2

Query: 65   TPGREGQRTPGRAFD---AAMTPTYAYSPARARTP-----------GGTAFSPAYT--GP 196
            TPG  G  TPGR       + +P++  SP   ++P            G AFSP  +  G 
Sbjct: 1461 TPGHGGMMTPGRDGTPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMAFSPGMSPGGF 1520

Query: 197  GGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
            GG+SP + A +  SP  S    A   T    +P        +P  SP SP Y+  SP + 
Sbjct: 1521 GGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1580

Query: 374  GGLGGGPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                  PA    + AY+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1581 PT---SPAYSPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1621

 Score = 70.1 bits (170), Expect = 8e-11
 Identities = 53/145 (36%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
 Frame = +2

Query: 77   EGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-GPGGF-SPINATASFSPIMSS 250
            +G RTPG      MTP       R  TPG  + SP++   PGG  SP + + +FSP    
Sbjct: 1457 DGSRTPGHG--GMMTP------GRDGTPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDG 1508

Query: 251  ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
               +   +PG    G SP    +P  SP SP Y+  SP +        +  + AY+P SP
Sbjct: 1509 MAFSPGMSPGGFG-GYSPT---SPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSP 1556

Query: 431  AYMATSPGMGYSPSTPALAVSSPGY 505
            AY  TSP   YSP++PA + +SP Y
Sbjct: 1557 AYSPTSP--AYSPTSPAYSPTSPAY 1579

[26][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase II subunit A) (DNA-directed RNA polymerase III
            largest subunit) n=1 Tax=Equus caballus
            RepID=UPI0001796DD3
          Length = 1834

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGISPAMTPWNVGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
             ++SP   S  + G ++P   +PG    G  +P  SP SP Y   SP       GG    
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPTSPAYEPRSP-------GGYTPQ 1611

Query: 404  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1612 SPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S            +P  SP    +P  SP SP Y+  SP     
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPT--------SPSYSPT---SPNYSPTSPSYSPTSP----- 1648

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                      +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1649 ----------SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1678

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1723

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S        T    TP        +P  SP SP Y   SP 
Sbjct: 1724 SPS-YSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPN 1782

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
            +        +    +Y+P SP+Y  TSP  GYSP++P  +++SP
Sbjct: 1783 YSP-TSPSYSPTTPSYSPTSPSYSPTSP--GYSPTSPTYSLTSP 1823

[27][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
            castellanii RepID=O00820_ACACA
          Length = 1569

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
 Frame = +2

Query: 62   YTPGRE--GQRTPGRAFDAAMTPTYAYS-PARARTPGGT---AFSPAYT------GPGGF 205
            Y PG    G  TP    D    P + ++ P    +PG T   ++SP         G G F
Sbjct: 1400 YEPGATSPGSATPYMGSDERYLPNFFHTTPMYRMSPGATPAASYSPYVDFGEFSPGRGSF 1459

Query: 206  SPINATASFSPIMSSADAAGR----ATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 367
            SP  ++ S+SP       AG     ++PG    +PG SP+   +P  SPASPGY+  SP 
Sbjct: 1460 SPSPSSPSYSPASPGYSPAGAGYSPSSPGYSPSSPGYSPS---SPGYSPASPGYSPSSPA 1516

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  +  Y+PASP+Y  TSP   YSP++P+ + SSP Y
Sbjct: 1517 Y--------SPTSPKYSPASPSYSPTSP--AYSPTSPSYSPSSPSY 1552

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
 Frame = +2

Query: 80   GQRTPGRAFDAAMTPTYAYSPAR-ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSAD 256
            G+ +PGR   +    + +YSPA    +P G  +SP+  G    SP      +SP   S+ 
Sbjct: 1450 GEFSPGRGSFSPSPSSPSYSPASPGYSPAGAGYSPSSPGYSPSSP-----GYSP---SSP 1501

Query: 257  AAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
                A+PG    +P  SP    +P+ SPASP Y+  SP +        +  + +Y+P+SP
Sbjct: 1502 GYSPASPGYSPSSPAYSPT---SPKYSPASPSYSPTSPAY--------SPTSPSYSPSSP 1550

Query: 431  AYMATSPGMGYSPSTPALAVS 493
            +Y  TSP   YSP++P+ + S
Sbjct: 1551 SYSPTSP--SYSPTSPSYSPS 1569

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
 Frame = +2

Query: 158  PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPG-RMTPGRSPAGRFTPRMS- 331
            P G   +  +  PG  SP +AT                TP  RM+PG +PA  ++P +  
Sbjct: 1390 PAGGEATAMFYEPGATSPGSATPYMGSDERYLPNFFHTTPMYRMSPGATPAASYSPYVDF 1449

Query: 332  -PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               SPG  + SP          +  + +Y+PASP Y  +  G GYSPS+P  + SSPGY
Sbjct: 1450 GEFSPGRGSFSP----------SPSSPSYSPASPGY--SPAGAGYSPSSPGYSPSSPGY 1496

[28][TOP]
>UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
            RepID=B0XMU6_ASPFC
          Length = 1750

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 55/162 (33%), Positives = 77/162 (47%), Gaps = 27/162 (16%)
 Frame = +2

Query: 101  AFDAAMTPTYAYSPAR---ARTPGGTA-----------FSPAYTGPGGFSP--------- 211
            AF     P  A+SP R   A +PGG             FSPA T P G+SP         
Sbjct: 1517 AFIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPAATSPAGYSPSSPFSANPT 1576

Query: 212  ---INATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
                + T+S+SP   ++   G  +P  MT PG SPA   +P  +P SP Y+  SP +G  
Sbjct: 1577 SPGYSPTSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQA 1630

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                P     +Y+P SP +  TSP   YSP++P+ + +SP +
Sbjct: 1631 SPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1665

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 62/188 (32%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            SPA   S  GY+P       P        +PT +YSP    +PG    SP +    GFSP
Sbjct: 1556 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMGITSPRFMTSPGFSP 1608

Query: 212  INATASFSPIMSS----ADAAGRATP-----GRMTPGRSPAGR-----------FTPRMS 331
              A+ SF+P   +    + A G+A+P        +PG SP               +P  S
Sbjct: 1609 --ASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFS 1666

Query: 332  PASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVS---- 493
            P SP Y+  SP  GG G    P       Y P SP +  TSP   YSP++P  A S    
Sbjct: 1667 PTSPSYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP-QTYSPTSPNFAGSPTSP 1725

Query: 494  ----SPGY 505
                SPGY
Sbjct: 1726 GGPTSPGY 1733

[29][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
            isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
          Length = 1970

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +   
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P      TP     +  +P+Y  SP    +P  T  SP Y  T P  +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790

Query: 206  SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP   + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++    
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874

[30][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
          Length = 1913

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +   
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 6/164 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y+  
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1723

Query: 197  G-GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
               + P    +S SP  S    +   +  R TP        +P  SP+SP Y+  SP++ 
Sbjct: 1724 SQSYHPTVVDSSTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY- 1782

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                      + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1783 -------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1817

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
            SP+   +   Y+P  +         D++ +P+Y+     YSP+   +P  T  SP YT P
Sbjct: 1710 SPSYSPTSPSYSPTSQSYHPT--VVDSSTSPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1763

Query: 197  GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
               S   ++ S+SP       + + TP   +P  SP+   +P  +P SP Y+  SP+   
Sbjct: 1764 SSPSYSPSSPSYSP------TSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK--- 1809

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                        Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1810 ------------YSPTSPKYSPTSPT--YSPTTPKYSPTSPTY 1838

[31][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25C
          Length = 1968

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1493 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGDGMTPGAAGFSPSA 1552

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1553 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1607

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1608 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1645

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1549 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1608

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +   
Sbjct: 1609 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1659

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1660 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1694

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1506 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGDGMTPGAAGFSPSAASDASGFSP-GYS 1564

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1565 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1624

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1625 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1673

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 1590 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1646

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1647 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1705

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1706 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1743

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P      TP     +  +P+Y  SP    +P  T  SP Y  T P  +
Sbjct: 1740 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1792

Query: 206  SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP   + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++    
Sbjct: 1793 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1841

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1842 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1876

[32][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
          Length = 1970

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +   
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P      TP     +  +P+Y  SP    +P  T  SP Y  T P  +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790

Query: 206  SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP   + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++    
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874

[33][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
            familiaris RepID=UPI0001951285
          Length = 1969

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 1/159 (0%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            SP+   +   Y+P R    TP     +  +P+Y  SP    +P  T  SP Y+     SP
Sbjct: 1738 SPSYSPTSPNYSPSRPNY-TPTSPSYSPTSPSY--SPT---SPNYTPMSPNYSPTSPNSP 1791

Query: 212  INATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
               + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++      
Sbjct: 1792 --TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY------ 1838

Query: 389  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1839 --TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1873

[34][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
            RepID=O35559_CRIGR
          Length = 1970

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +   
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P      TP     +  +P+Y  SP    +P  T  SP Y  T P  +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790

Query: 206  SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP   + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++    
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874

[35][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
          Length = 1966

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +   
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
            SP+   +   YTP          ++    +P+Y+     YSP+   +P  T  SP YT P
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1820

Query: 197  GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
               S   ++ S+SP       + + TP   +P  SP+   +P  +PASP Y+  SP+   
Sbjct: 1821 SSPSYSPSSPSYSP------TSPKYTP--TSPSYSPS---SPEYTPASPKYSPTSPK--- 1866

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                        Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1867 ------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1895

[36][TOP]
>UniRef100_B4DET1 cDNA FLJ53860, highly similar to DNA-directed RNA polymerase II
           largest subunit (EC 2.7.7.6) n=1 Tax=Homo sapiens
           RepID=B4DET1_HUMAN
          Length = 855

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68  PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
           PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 390 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 449

Query: 218 AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
           A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 450 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 504

Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 505 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 542

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
           SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 446 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 505

Query: 200 GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
           G++P   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +   
Sbjct: 506 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 556

Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 557 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 591

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
           G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 403 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 461

Query: 224 ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
            ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 462 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 521

Query: 350 AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 522 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 570

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26  ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
           A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 487 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 543

Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
            T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 544 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 602

Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 603 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 640

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFSPA 184
            SP+   +   YTP          ++    +P+Y+     YSP+  R    +P  T  SP+
Sbjct: 665  SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPS 723

Query: 185  YTGPG-GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
            Y+     +SP +   +  SP  S        T  + +P        TP+ SP SP Y+  
Sbjct: 724  YSPSSPSYSPTSPKYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 783

Query: 359  SPRFG------GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
            SP +          G   +  +  Y+P SP Y  TSP G  YSP++P  + +SP Y
Sbjct: 784  SPVYTPTSPKYSPTGPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 839

[37][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
          Length = 1970

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +   
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
            SP+   +   YTP          ++    +P+Y+     YSP+   +P  T  SP YT P
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1820

Query: 197  GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
               S   ++ S+SP      A+ + TP   +P  SP+   +P  +P SP Y+  SP+   
Sbjct: 1821 SSPSYSPSSPSYSP------ASPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK--- 1866

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                        Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1867 ------------YSPTSPKYSPTSPT--YSPTTPKYSPTSPTY 1895

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR-TPGGTAFSPAYTGPGGFS 208
            SP+   S   YTP +    TP     +  +P+Y  SPA  + TP   ++SP+       S
Sbjct: 1801 SPSYSPSSPRYTP-QSPTYTPSSPSYSPSSPSY--SPASPKYTPTSPSYSPSSPEYTPTS 1857

Query: 209  PINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            P  +  S  +SP  S   +    T    TP  SP    +P  SP SP Y   SP++    
Sbjct: 1858 PKYSPTSPKYSPT-SPKYSPTSPTYSPTTPKYSPT---SPTYSPTSPVYTPTSPKYSP-T 1912

Query: 383  GGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
                +  +  Y+P SP Y  TSP G  YSP++P  + +SP Y
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1954

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P      TP     +  +P+Y  SP    +P  T  SP Y  T P  +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790

Query: 206  SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP   + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++    
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPASPKY---- 1839

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874

[38][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CNZ4_ASPCL
          Length = 1765

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 55/163 (33%), Positives = 75/163 (46%), Gaps = 28/163 (17%)
 Frame = +2

Query: 101  AFDAAMTPTYAYSP---ARARTPGGTA-----------FSPAYTGPGGFSP--------- 211
            A+     P  A+SP   A A TPGG             FSPA T P G+SP         
Sbjct: 1520 AYIGTPDPDSAFSPIGQAGAETPGGFTEYQPTGGFGGGFSPAATSPAGYSPTSPFSANPT 1579

Query: 212  ---INATASFSPIMSSADAAG-RATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
                + T S+SPI     +     +PG MT PG SP    +P  +P SP Y+  SP +G 
Sbjct: 1580 SPGYSPTTSYSPIAPGITSPRFNTSPGFMTSPGFSPV---SPSFAPTSPAYSPTSPAYGQ 1636

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 P     +Y+P SP +  TSP   YSP++P+ + +SP +
Sbjct: 1637 ASPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1672

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 63/198 (31%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA----F 175
            AA++    SP  P S    +PG               +PT +YSP     PG T+     
Sbjct: 1561 AATSPAGYSPTSPFSANPTSPG--------------YSPTTSYSPI---APGITSPRFNT 1603

Query: 176  SPAYTGPGGFSPINAT-ASFSPIMS-SADAAGRATP-----GRMTPGRSPAGR------- 313
            SP +    GFSP++ + A  SP  S ++ A G+A+P        +PG SP          
Sbjct: 1604 SPGFMTSPGFSPVSPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSP 1663

Query: 314  ----FTPRMSPASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPST 475
                 +P  SP SP Y+  SP  GG G    P       Y P SP +  TSP   YSP++
Sbjct: 1664 SFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP-QTYSPTS 1722

Query: 476  PALAVS--------SPGY 505
            P  A S        SPGY
Sbjct: 1723 PNFAGSPTSPGGPTSPGY 1740

[39][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
            RepID=RPB1_MOUSE
          Length = 1970

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +   
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
            SP+   +   YTP          ++    +P+Y+     YSP+   +P  T  SP YT P
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPT-SPSYSPTSPSYSPS---SPRYTPQSPTYT-P 1820

Query: 197  GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
               S   ++ S+SP       + + TP   +P  SP+   +P  +PASP Y+  SP+   
Sbjct: 1821 SSPSYSPSSPSYSP------TSPKYTP--TSPSYSPS---SPEYTPASPKYSPTSPK--- 1866

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                        Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1867 ------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1895

[40][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
            RepID=RPB1_HUMAN
          Length = 1970

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1550

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1551 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1605

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1606 --GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +   
Sbjct: 1607 GYTP--QSPSYSPTSPSYSPTSPSY-SPTSPNYSPT---SPSYSPTSPSYSPTSPSY--- 1657

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1658 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1692

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1504 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1562

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1563 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1622

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 SPTSPSYSP-TSPNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1644

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1645 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1704 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1741

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P      TP     +  +P+Y  SP    +P  T  SP Y  T P  +
Sbjct: 1738 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1790

Query: 206  SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP   + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++    
Sbjct: 1791 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1839

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1840 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1874

[41][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2C
          Length = 1888

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
            PG       G  F +A +P    SPA   TP     +PAY            G  GFSP 
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548

Query: 215  NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
             A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP    
Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
            P +  G TPG  G  +P  A DA+  +P   YSPA + TPG        SP    PGG  
Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SP     S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +     
Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670

[42][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B29
          Length = 1891

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
            PG       G  F +A +P    SPA   TP     +PAY            G  GFSP 
Sbjct: 1460 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1517

Query: 215  NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
             A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP    
Sbjct: 1518 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1573

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1574 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1611

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
            P +  G TPG  G  +P  A DA+  +P   YSPA + TPG        SP    PGG  
Sbjct: 1501 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1557

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SP     S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +     
Sbjct: 1558 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1604

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1605 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1639

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   +   Y+P          ++    +P+Y+     YSP+R   TP   ++SP  T 
Sbjct: 1678 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1734

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP +   +  SP  S    + + TP   +P  SP+   +P  +P SP Y+  SP+ 
Sbjct: 1735 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1787

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                          Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1788 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1816

[43][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B28
          Length = 1908

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
            PG       G  F +A +P    SPA   TP     +PAY            G  GFSP 
Sbjct: 1477 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1534

Query: 215  NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
             A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP    
Sbjct: 1535 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1590

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1591 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1628

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
            P +  G TPG  G  +P  A DA+  +P   YSPA + TPG        SP    PGG  
Sbjct: 1518 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1574

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SP     S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +     
Sbjct: 1575 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1621

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1622 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1656

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   +   Y+P          ++    +P+Y+     YSP+R   TP   ++SP  T 
Sbjct: 1695 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1751

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP +   +  SP  S    + + TP   +P  SP+   +P  +P SP Y+  SP+ 
Sbjct: 1752 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1804

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                          Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1805 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1833

[44][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B24
          Length = 1924

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
            PG       G  F +A +P    SPA   TP     +PAY            G  GFSP 
Sbjct: 1493 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1550

Query: 215  NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
             A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP    
Sbjct: 1551 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1606

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1607 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1644

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
            P +  G TPG  G  +P  A DA+  +P   YSPA + TPG        SP    PGG  
Sbjct: 1534 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1590

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SP     S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +     
Sbjct: 1591 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1637

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1638 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1672

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   +   Y+P          ++    +P+Y+     YSP+R   TP   ++SP  T 
Sbjct: 1711 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1767

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP +   +  SP  S    + + TP   +P  SP+   +P  +P SP Y+  SP+ 
Sbjct: 1768 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1820

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                          Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1821 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1849

[45][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B21
          Length = 1922

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
            PG       G  F +A +P    SPA   TP     +PAY            G  GFSP 
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548

Query: 215  NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
             A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP    
Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
            P +  G TPG  G  +P  A DA+  +P   YSPA + TPG        SP    PGG  
Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SP     S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +     
Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   +   Y+P          ++    +P+Y+     YSP+R   TP   ++SP  T 
Sbjct: 1709 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1765

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP +   +  SP  S    + + TP   +P  SP+   +P  +P SP Y+  SP+ 
Sbjct: 1766 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1818

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                          Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1819 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1847

[46][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B20
          Length = 1923

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
            PG       G  F +A +P    SPA   TP     +PAY            G  GFSP 
Sbjct: 1492 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1549

Query: 215  NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
             A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP    
Sbjct: 1550 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1605

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1606 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1643

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
            P +  G TPG  G  +P  A DA+  +P   YSPA + TPG        SP    PGG  
Sbjct: 1533 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1589

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SP     S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +     
Sbjct: 1590 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1636

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1637 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1671

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   +   Y+P          ++    +P+Y+     YSP+R   TP   ++SP  T 
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1766

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP +   +  SP  S    + + TP   +P  SP+   +P  +P SP Y+  SP+ 
Sbjct: 1767 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1819

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                          Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1820 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1848

[47][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B17
          Length = 1788

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
            PG       G  F +A +P    SPA   TP     +PAY            G  GFSP 
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548

Query: 215  NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
             A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP    
Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
            P +  G TPG  G  +P  A DA+  +P   YSPA + TPG        SP    PGG  
Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SP     S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +     
Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP        +P  +  S
Sbjct: 1587 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1646

Query: 179  PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
            P+Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y
Sbjct: 1647 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1705

Query: 350  AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
            +  SP +              +  + +Y+P SP+Y  TSP               YSP++
Sbjct: 1706 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1765

Query: 476  PALAVSSPGY 505
            P+ + +SP Y
Sbjct: 1766 PSYSPTSPNY 1775

[48][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B16
          Length = 1922

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/163 (34%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT-----------GPGGFSPI 214
            PG       G  F +A +P    SPA   TP     +PAY            G  GFSP 
Sbjct: 1491 PGLGAAGPTGMFFGSAPSPMGGISPAM--TPWNQGATPAYDPDPGAGSGMTPGAAGFSPS 1548

Query: 215  NAT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGG 376
             A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP    
Sbjct: 1549 AASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP---- 1604

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1605 ---GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1642

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPGGTAF----SPAYTGPGG-F 205
            P +  G TPG  G  +P  A DA+  +P   YSPA + TPG        SP    PGG  
Sbjct: 1532 PGAGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGPSSPYIPSPGGAM 1588

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SP     S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +     
Sbjct: 1589 SP-----SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----- 1635

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1636 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   +   Y+P          ++    +P+Y+     YSP+R   TP   ++SP  T 
Sbjct: 1709 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1765

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP +   +  SP  S    + + TP   +P  SP+   +P  +P SP Y+  SP+ 
Sbjct: 1766 PS-YSPTSPNYTPMSPNYSPTPTSPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK- 1818

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                          Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1819 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1847

[49][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
          Length = 1935

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/167 (33%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPA-----RARTPGGTAFSPAY-----TGPGGFSPIN 217
            PG       G  F +A +P    SPA     +  TP   A+SP+       G  GFSP  
Sbjct: 1456 PGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSA 1515

Query: 218  AT--ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGG 379
            A+  + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP     
Sbjct: 1516 ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP----- 1570

Query: 380  LGGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505
              GG    + +Y+P SP+Y  TSP        YSP++P+ + +SP Y
Sbjct: 1571 --GGYTPQSPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYSPTSPSY 1615

 Score = 70.1 bits (170), Expect = 8e-11
 Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT--GPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1512 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1571

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            G++P   + S+SP   S       T    +P  S     +P  SP SP Y+  SP +   
Sbjct: 1572 GYTP--QSPSYSPTSPSYSP----TSPSYSPTSSNYSPTSPSYSPTSPSYSPTSPSY--- 1622

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 -----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1657

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP   +
Sbjct: 1469 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP-GYS 1527

Query: 224  ASFSPIMSSADAAGRATP------GRMTPGRSPA---------GRFTPRM---SPASPGY 349
             ++SP   S  + G ++P      G M+P  SP          G +TP+    SP SP Y
Sbjct: 1528 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1587

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1588 SPTSPSYSP-TSSNYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1636

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP  +     +P  +  S
Sbjct: 1553 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYSPTS 1612

Query: 179  PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
            P+Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y
Sbjct: 1613 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1672 SPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPNY 1720

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
            SP+   S   YTP +    TP     +  +P+Y+     Y+P    +P  +  SP YT  
Sbjct: 1766 SPSYSPSSPRYTP-QSPTYTPSSPSYSPSSPSYSPTSPKYTPT---SPPYSPSSPEYTPT 1821

Query: 197  GG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
               FSP   +  +SP        G  T    TP  SP    +P  SP SP Y   SP++ 
Sbjct: 1822 SPKFSP--TSPKYSPTSPKYSPTG-PTYSPTTPKYSPT---SPTYSPTSPVYTPTSPKYS 1875

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
                   +  +  Y+P SP Y  TSP G  YSP++P  + +SP Y
Sbjct: 1876 P-TSPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1919

[50][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            briggsae RepID=RPB1_CAEBR
          Length = 1853

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 49/158 (31%), Positives = 70/158 (44%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            SPA      G TP   G  +P       M+P+  +SPA     G + F+      GG+SP
Sbjct: 1503 SPAHSPWNSGVTPNYSGPWSP----TGGMSPSAGFSPAGNLDGGASPFNE-----GGWSP 1553

Query: 212  INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 391
             +       +     A G  +PG  +P        +P  SP SP Y+  SP   G     
Sbjct: 1554 ASPGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVS 1613

Query: 392  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P     +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1614 P-----SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1644

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 55/172 (31%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAA-MTPTY-AYSPARARTPGGTAFSPAY--TG 193
            A SP  P +  G +PG     +PG +  +   +PT  +YSP      G +  SP+Y  T 
Sbjct: 1562 ALSPRTP-AYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTS 1620

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SPR+
Sbjct: 1621 PS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1679

Query: 371  G------GGLGGGPAGGAGAYAPASPAYMATSPGM-GYSPSTPALAVSSPGY 505
                          +  +  Y+P SP Y  TSP   GYSPS+P  + SSP Y
Sbjct: 1680 SPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTY 1731

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
 Frame = +2

Query: 113  AMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP 292
            A +P+  +SPA +  P  +  +P Y+GP           +SP    + +AG +  G +  
Sbjct: 1495 AGSPSREFSPAHS--PWNSGVTPNYSGP-----------WSPTGGMSPSAGFSPAGNLDG 1541

Query: 293  GRSPAGRFTPRMSPASPG--YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 466
            G SP        SPASPG    A+SPR     G  P    G Y+PASP +  TSP   YS
Sbjct: 1542 GASPFNE--GGWSPASPGDPLGALSPRTPAYGGMSP----GVYSPASPGFSMTSP--HYS 1593

Query: 467  PSTPALAVSSPGY 505
            P++P+ + +SP +
Sbjct: 1594 PTSPSYSPTSPAH 1606

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
            SP  P  E GY+P    + +P     +  +P+Y+     YSP    +P  +  SP YT  
Sbjct: 1708 SPTSPSYE-GYSPSSP-KYSPSSPTYSPTSPSYSPTSPQYSPT---SPQYSPSSPTYTP- 1761

Query: 197  GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
                   ++ +++P    A ++ + +P   +P  SP    +P  +P+SP Y+  SP +  
Sbjct: 1762 -------SSPTYNPTSPRAFSSPQYSP--TSPTYSPT---SPSYTPSSPQYSPTSPTYTP 1809

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 P G +  Y+P+SP Y  +SP   YSP++P+ + SSP Y
Sbjct: 1810 SPADQP-GTSNQYSPSSPTYSPSSPT--YSPASPSYSPSSPTY 1849

[51][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF13
          Length = 1932

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1509 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1568

Query: 200  GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
            G++P + + S  SP  S    +   T    +P        +P  SP SP Y+  SP +  
Sbjct: 1569 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1626

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                  +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1627 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1661

 Score = 66.6 bits (161), Expect = 9e-10
 Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
 Frame = +2

Query: 155  TPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            TPG   FSP A +   GFSP   + ++SP   S  + G ++P   +PG    G  +P  S
Sbjct: 1502 TPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYS 1556

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P SP Y   SP       GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1557 PTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1605

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 1550 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1606

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1607 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1665

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1666 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1703

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P      TP     +  +P+Y  SP    +P  T  SP Y  T P  +
Sbjct: 1700 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1752

Query: 206  SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP   + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++    
Sbjct: 1753 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1801

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1802 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1836

[52][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25B
          Length = 1932

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199
            SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 1509 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1568

Query: 200  GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
            G++P + + S  SP  S    +   T    +P        +P  SP SP Y+  SP +  
Sbjct: 1569 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1626

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                  +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1627 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1661

 Score = 66.6 bits (161), Expect = 9e-10
 Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
 Frame = +2

Query: 155  TPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            TPG   FSP A +   GFSP   + ++SP   S  + G ++P   +PG    G  +P  S
Sbjct: 1502 TPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYS 1556

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P SP Y   SP       GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1557 PTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1605

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 1550 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 1606

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1607 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1665

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1666 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1703

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P      TP     +  +P+Y  SP    +P  T  SP Y  T P  +
Sbjct: 1700 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 1752

Query: 206  SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP   + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++    
Sbjct: 1753 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 1801

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1802 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1836

[53][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 3/160 (1%)
 Frame = +2

Query: 35   PAMPESERGYTPGREGQ-RTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            P+   ++ G TP R     TP    D  M+P+Y  SP+   +P   A    Y G   FSP
Sbjct: 1481 PSFEATDYGMTPSRTPMIGTPHN--DGMMSPSYLLSPSLRASPLSDAQFSPYVGNMPFSP 1538

Query: 212  INATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
              ++  +SP          ++PG   ++PG SP    +P  SP SPGY+  SP       
Sbjct: 1539 --SSPGYSP----------SSPGYSPLSPGYSPT---SPGYSPTSPGYSPTSP------- 1576

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             G +  +  Y+P SP+Y  TSP  GYSP++P+ + +SP Y
Sbjct: 1577 -GYSPTSPGYSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1613

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 60/185 (32%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
 Frame = +2

Query: 2    DAAASARIARSPAMPESERGYTPGREGQR--TPGRA-FDAAMTPTY-AYSPARA----RT 157
            DA  S  +   P  P S  GY+P   G    +PG +      +PT   YSP        +
Sbjct: 1524 DAQFSPYVGNMPFSPSSP-GYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTS 1582

Query: 158  PGGTAFSPAY--TGPG------GFSPINAT-ASFSPIMSSADAAGRATPGRMTPGRSPAG 310
            PG +  SP+Y  T PG       +SP + + A  SP  S    +   T    +P      
Sbjct: 1583 PGYSPTSPSYSPTSPGYSPTSPSYSPTSPSYAPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1642

Query: 311  RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
              +P  SP SP Y+  SP +        A  + AY+P SP+Y  TSPG  YSP++P+ + 
Sbjct: 1643 PTSPSYSPTSPSYSPTSPAYSP-TSPSYAPTSPAYSPTSPSYSPTSPG--YSPTSPSYSP 1699

Query: 491  SSPGY 505
            SSP Y
Sbjct: 1700 SSPSY 1704

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP    +   Y+P   G      ++    +P+YA     YSP    +P  +  SP+Y  T
Sbjct: 1582 SPGYSPTSPSYSPTSPGYSPTSPSYSPT-SPSYAPTSPSYSPT---SPSYSPTSPSYSPT 1637

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    A   T     P        +P  SP SPGY+  SP 
Sbjct: 1638 SPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPSYAPTSPAYSPTSPSYSPTSPGYSPTSPS 1696

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SPAY  TSP   YSPS+P+ + +SP Y
Sbjct: 1697 YSPS-SPSYSPTSPSYSPTSPAYSPTSPR--YSPSSPSYSPTSPSY 1739

[54][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 66/186 (35%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTP--------TYAYSPARARTP 160
            A + A    SP  P    GY P   G  T        M+P        + AYSP   R  
Sbjct: 1547 AQSPAGYGFSPVSP----GYVPTSPGYATSPAGALGGMSPWTGNMGATSPAYSPTSPRIF 1602

Query: 161  GGTAFSPAY--TGPG------GFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGR 313
            GG A SP+Y  T P        +SP + A A +SP  S A   G AT  + +P       
Sbjct: 1603 GG-ATSPSYSPTSPSYSPASPNYSPSSPAGAGYSP-SSPAGRYGAATSPQYSPASPKFSP 1660

Query: 314  FTPRMSPASPGYAAMSPRFG--GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487
             +P  SPASP Y   SP +        G  GG G ++P SPAY  TSP   YSP++PA +
Sbjct: 1661 TSPNYSPASPAYTPTSPVYSPTSPAMAGRGGGKG-FSPTSPAYSPTSPQ--YSPASPAFS 1717

Query: 488  VSSPGY 505
             +SP Y
Sbjct: 1718 PTSPQY 1723

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 52/142 (36%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
 Frame = +2

Query: 137  SPARARTPGGTAFSPAY-----TGPG-GFSPINATASFSPIMSSADAAG--------RAT 274
            +P  A++P G  FSP       T PG   SP  A    SP   +  A          R  
Sbjct: 1543 TPLGAQSPAGYGFSPVSPGYVPTSPGYATSPAGALGGMSPWTGNMGATSPAYSPTSPRIF 1602

Query: 275  PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYM 439
             G  +P  SP    +P  SPASP Y+  SP   G     PAG  GA     Y+PASP + 
Sbjct: 1603 GGATSPSYSPT---SPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKFS 1659

Query: 440  ATSPGMGYSPSTPALAVSSPGY 505
             TSP   YSP++PA   +SP Y
Sbjct: 1660 PTSP--NYSPASPAYTPTSPVY 1679

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR----TPGGTAFSPAYTGPG 199
            SP+ P    GY+P      +P   + AA +P Y  SPA  +    +P  +  SPAYT   
Sbjct: 1625 SPSSPAGA-GYSPS-----SPAGRYGAATSPQY--SPASPKFSPTSPNYSPASPAYTPT- 1675

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
              SP+ +  S  P M+        +P   +P  SP    +P+ SPASP ++  SP++   
Sbjct: 1676 --SPVYSPTS--PAMAGRGGGKGFSP--TSPAYSPT---SPQYSPASPAFSPTSPQYS-- 1724

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGY---SPSTPALAVSS 496
                PA  +  Y+P SP Y  TSP MG    S   P  A +S
Sbjct: 1725 ----PA--SPQYSPTSPQYSPTSPAMGMGGASAGGPGAAAAS 1760

[55][TOP]
>UniRef100_A2QAT7 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
            RepID=A2QAT7_ASPNC
          Length = 1747

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 56/141 (39%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
 Frame = +2

Query: 101  AFDAAMTPTYAYSPAR---ARTPGG-TAFSPAYTGPGGFSPINATASFSPIMSSADAAGR 268
            A+     P   +SP R   A TPGG T + P     GGFSP    A+ SP   S  +   
Sbjct: 1516 AYIGTPDPESNFSPIRQAGAETPGGFTEYQPTGGFGGGFSP----AATSPAGYSPSSPFS 1571

Query: 269  ATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF-GGGLGGGPAGGAGAYAPASPAYMAT 445
            A P   +PG SP   +    SP SPG A  SPRF     G  PA  + ++AP SPAY  T
Sbjct: 1572 ANP--TSPGYSPTSSY----SPTSPGMAITSPRFMSTSPGFSPA--SPSFAPTSPAYSPT 1623

Query: 446  SPGMGY-SPSTPALAVSSPGY 505
            SP  G  SP++P+ + +SPG+
Sbjct: 1624 SPAYGQASPTSPSYSPTSPGF 1644

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SPA   S  GY+P       P        +PT +YSP    +PG    SP +  T PG F
Sbjct: 1555 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMAITSPRFMSTSPG-F 1606

Query: 206  SPINATASFSPIMSS----ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
            SP  A+ SF+P   +    + A G+A+P   +P  SP    +P  SP SP Y+  SP F 
Sbjct: 1607 SP--ASPSFAPTSPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPSFS 1659

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMG--------YSPSTPALAVSSPGY 505
                  PA  + A++P SP+Y  TSP +G         SP++P    +SPG+
Sbjct: 1660 ------PA--SPAFSPTSPSYSPTSPAVGGVGRHLSPTSPTSPKYTPTSPGW 1703

[56][TOP]
>UniRef100_A1D1U9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
            RepID=A1D1U9_NEOFI
          Length = 1750

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 27/162 (16%)
 Frame = +2

Query: 101  AFDAAMTPTYAYSPAR---ARTPGGTA-----------FSPAYTGPGGFSP--------- 211
            A+     P  A+SP R   A +PGG             FSPA T P G+SP         
Sbjct: 1517 AYIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPAATSPAGYSPSSPFSANPT 1576

Query: 212  ---INATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
                + T+S+SP   ++   G  +P  MT PG SPA   +P  +P SP Y+  SP +G  
Sbjct: 1577 SPGYSPTSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQA 1630

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                P     +Y+P SP +  TSP   YSP++P+ + +SP +
Sbjct: 1631 SPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1665

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 62/188 (32%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            SPA   S  GY+P       P        +PT +YSP    +PG    SP +    GFSP
Sbjct: 1556 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMGITSPRFMTSPGFSP 1608

Query: 212  INATASFSPIMSS----ADAAGRATP-----GRMTPGRSPAGR-----------FTPRMS 331
              A+ SF+P   +    + A G+A+P        +PG SP               +P  S
Sbjct: 1609 --ASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFS 1666

Query: 332  PASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVS---- 493
            P SP Y+  SP  GG G    P       Y P SP +  TSP   YSP++P  A S    
Sbjct: 1667 PTSPSYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP-QTYSPTSPNFAGSPTSP 1725

Query: 494  ----SPGY 505
                SPGY
Sbjct: 1726 GGPTSPGY 1733

[57][TOP]
>UniRef100_P11414 DNA-directed RNA polymerase II subunit RPB1 (Fragment) n=1
           Tax=Cricetulus griseus RepID=RPB1_CRIGR
          Length = 467

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199
           SP+      G++PG       TPG       +  Y  SP  A +P  +  SPAY    PG
Sbjct: 44  SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 103

Query: 200 GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
           G++P + + S  SP  S    +   T    +P        +P  SP SP Y+  SP +  
Sbjct: 104 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 161

Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 162 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 196

 Score = 66.6 bits (161), Expect = 9e-10
 Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
 Frame = +2

Query: 155 TPGGTAFSP-AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
           TPG   FSP A +   GFSP   + ++SP   S  + G ++P   +PG    G  +P  S
Sbjct: 37  TPGAAGFSPSAASDASGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYS 91

Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           P SP Y   SP       GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 92  PTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 140

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26  ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
           A SP+   +   Y P   G  TP     +  +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 85  AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPT---SPNYSPTSPSYS 141

Query: 188 -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
            T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 142 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 200

Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 201 PSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 238

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
           SP+   +   Y+P      TP     +  +P+Y  SP    +P  T  SP Y  T P  +
Sbjct: 235 SPSYSPTSPNYSPTSPNY-TPTSPSYSPTSPSY--SPT---SPNYTPTSPNYSPTSPS-Y 287

Query: 206 SPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
           SP   + S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++    
Sbjct: 288 SP--TSPSYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY---- 336

Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                  + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 337 ----TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 371

[58][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2B
          Length = 1892

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRA-FDAAMTPTY-AYSPA--RARTPGGTAFSP-AYTGPGGFSPINAT 223
            G  P   G  +P    ++   TP Y A+SP+     TPG   FSP A +   GFSP    
Sbjct: 1499 GSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSP---- 1554

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
              +SP  S        TPG  +PG SP G  +P  SP SP Y   SP       GG    
Sbjct: 1555 -GYSPAWSP-------TPG--SPG-SPGGAMSPSYSPTSPAYEPRSP-------GGYTPQ 1596

Query: 404  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1597 SPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1628

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 57/169 (33%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAA-MTPTYAYSPARARTPG-----GTAFSPAYT----- 190
            P    G TPG  G  +P  A DA+  +P   YSPA + TPG     G A SP+Y+     
Sbjct: 1528 PSVGSGMTPGAAGF-SPSAASDASGFSP--GYSPAWSPTPGSPGSPGGAMSPSYSPTSPA 1584

Query: 191  ----GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
                 PGG++P   + S+SP   S            +P  SP    +P  SP SP Y+  
Sbjct: 1585 YEPRSPGGYTP--QSPSYSPTSPSYSPT--------SPSYSPT---SPNYSPTSPSYSPT 1631

Query: 359  SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            SP               +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1632 SP---------------SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1663

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1646 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1701

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P R      +P  SP SP Y+  SP+
Sbjct: 1702 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPK 1760

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +           + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1761 Y--------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1796

[59][TOP]
>UniRef100_Q99367 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99367_SOYBN
          Length = 494

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
 Frame = +2

Query: 62  YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220
           Y  G +   TP R+        +  M+P+Y  SP    +P   A    Y G   FSP  +
Sbjct: 148 YMDGLDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSP-TS 206

Query: 221 TASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394
           +  +SP   S+     ++PG    +PG SP    +P  SP SPGY+  SP +      G 
Sbjct: 207 SPGYSP---SSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGY 259

Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           +  + AY+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 260 SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 294

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
           SP    +   Y+P   G      A+    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 242 SPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 297

Query: 191 GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
            P  +SP + A +  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 298 SPS-YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 356

Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSP 499
           +      G +  + +Y+P SP+Y  TSP            + YSPS+P L+ SSP
Sbjct: 357 YSP-TSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSP 410

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193
           SP+   +   Y+P          A+     A +PT  +YSP    +P  +  SP+Y  T 
Sbjct: 284 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPT---SPSYSPTSPSYSPTS 340

Query: 194 PGGFSPINATASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 367
           P  +SP   + S+SP   ++ A    +PG    +P  SP    +P  SP SP Y   S +
Sbjct: 341 PS-YSP--TSPSYSP---TSPAYSPTSPGYSPTSPSYSPT---SPSYSPTSPSYNPQSAK 391

Query: 368 FGGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           +   L   P+      +  Y+P SP Y  TSP   YSP++P+ + SSP Y
Sbjct: 392 YSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 439

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190
           SP+   +   Y+P          ++    +P+Y     AYSP    +PG +  SP+Y  T
Sbjct: 319 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 374

Query: 191 GPGGFSPINAT-----ASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASP 343
            P  +SP + +     A +SP ++ + ++ R +P       +P  SP    +P  SP SP
Sbjct: 375 SPS-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPT---SPSYSPTSP 430

Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
            Y+  SP +        +G +  Y+P+SP +   SP  GYSPS P  + SS
Sbjct: 431 SYSPSSPTYSPSSPYN-SGVSPDYSPSSPQF---SPSTGYSPSQPGYSPSS 477

[60][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
            RepID=B0XAQ9_CULQU
          Length = 1874

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 53/154 (34%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAY----SPARARTPGGTAFSP-AYTGPGGFSPINAT 223
            G TP      TP   +  + TP Y       P    TPGG +FSP A +   G SP    
Sbjct: 1478 GATPSMSPAMTP---WQQSQTPGYGEWSPSGPPSGMTPGGPSFSPSAQSDASGMSP---- 1530

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
             S+SP+  S  + G +    M+P    +   +P  SP+SP YAA SP           G 
Sbjct: 1531 -SWSPMPGSPSSPGPS----MSPYFPSSPSASPSYSPSSPNYAAASP----------GGA 1575

Query: 404  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1576 SPGYSPTSPSYSPTSP--NYSPTSPRYSPTSPNY 1607

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGT---------AFSPA 184
            SP+ P S  G TPG        ++  + M+P+++  P    +PG +         + SP+
Sbjct: 1502 SPSGPPS--GMTPGGPSFSPSAQSDASGMSPSWSPMPGSPSSPGPSMSPYFPSSPSASPS 1559

Query: 185  YT---------GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
            Y+          PGG SP    +  SP  S        T  R +P        +P  SP 
Sbjct: 1560 YSPSSPNYAAASPGGASP--GYSPTSPSYSPTSPNYSPTSPRYSPTSPNYSPTSPNYSPT 1617

Query: 338  SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            SP Y+  SP +       P+  + AY+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1618 SPSYSPTSPLYSPTATYAPS--SPAYSPTSPSYSPTSP---YSPTSPSYSPTSPAY 1668

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
 Frame = +2

Query: 119  TPTYA-----YSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGR 283
            +P+Y+     YSP     P   A+SP  T P  +SP +  +  SP  S    A   T   
Sbjct: 1618 SPSYSPTSPLYSPTATYAPSSPAYSP--TSP-SYSPTSPYSPTSPSYSPTSPAYSPTSPS 1674

Query: 284  MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 463
             +P        +P  SP SP Y+  SP +              Y+P+SP Y  TSP   Y
Sbjct: 1675 YSPSSPSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPN-YSPSSPHYSPTSP--SY 1731

Query: 464  SPSTPALAVSSPGY 505
            SPS+P  + +SP Y
Sbjct: 1732 SPSSPKYSPTSPSY 1745

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARAR----TPGGTAFSPAY--T 190
            SPA   +   Y+P      +P      + +PT  AYSP        +P  +  SP+Y  T
Sbjct: 1638 SPAYSPTSPSYSP-----TSPYSPTSPSYSPTSPAYSPTSPSYSPSSPSYSPTSPSYSPT 1692

Query: 191  GPGGFSPIN-----ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
             P  +SP +     AT S+SP   + + ++   +P   +P  SP+   +P+ SP SP Y+
Sbjct: 1693 SPS-YSPTSPNYTPATPSYSPTSPNYSPSSPHYSP--TSPSYSPS---SPKYSPTSPSYS 1746

Query: 353  AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
              SP +         GG+  Y PASP Y  TSP   YSP++P+ + SSP
Sbjct: 1747 PTSPSY---------GGSPQYTPASPQYSPTSP--KYSPTSPSYSPSSP 1784

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
            SP+   +   Y+P           +  A TP+Y+     YSP+   +P  +  SP+Y+  
Sbjct: 1679 SPSYSPTSPSYSPTSPSYSPTSPNYTPA-TPSYSPTSPNYSPS---SPHYSPTSPSYSPS 1734

Query: 197  GG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
               +SP   + S+SP   S   + + TP   +P  SP    +P+ SP SP Y+  SP+  
Sbjct: 1735 SPKYSP--TSPSYSPTSPSYGGSPQYTPA--SPQYSPT---SPKYSPTSPSYSPSSPQHS 1787

Query: 374  GGLGGGP----------------------AGGAGAYAPASPAYMATSPGMGYSPSTPALA 487
             G  G                        + G+  Y+P SP Y  TSP   YSPS+PA +
Sbjct: 1788 PGSSGSNFMVNSPTYSPTTARYSPNMSSYSPGSQKYSPTSPVYTPTSP--HYSPSSPAYS 1845

Query: 488  VSSPGY 505
             +  GY
Sbjct: 1846 PTGQGY 1851

[61][TOP]
>UniRef100_C8VQG7 DNA-directed RNA polymerase (EC 2.7.7.6)
            [Source:UniProtKB/TrEMBL;Acc:Q873Q6] n=2 Tax=Emericella
            nidulans RepID=C8VQG7_EMENI
          Length = 1745

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 26/161 (16%)
 Frame = +2

Query: 101  AFDAAMTPTYAYSPAR---ARTPGGTA----------FSPAYTGPGGFSP---------- 211
            A+     P   +SP R   A TPGG            FSPA T P G+SP          
Sbjct: 1517 AYIGTPDPDSNFSPIRQAGAETPGGFTEYQPSGGFGGFSPAATSPAGYSPSSPFSANPTS 1576

Query: 212  --INATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
               + T+S+SP   ++   G  +P  MT PG SPA   +P  +P SP Y+  SP +G   
Sbjct: 1577 PGYSPTSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQAS 1630

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               P     +Y+P SP +  TSP   YSP++P+ + +SP +
Sbjct: 1631 PTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPTSPAF 1664

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            SPA   S  GY+P       P        +PT +YSP    +PG    SP +    GFSP
Sbjct: 1555 SPAAT-SPAGYSPSSPFSANPT---SPGYSPTSSYSPT---SPGMGITSPRFMTSPGFSP 1607

Query: 212  INATASFSPIMSS----ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
              A+ SF+P   +    + A G+A+P   +P  SP    +P  SP SP Y+  SP F   
Sbjct: 1608 --ASPSFAPTSPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPSF--- 1657

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMG-------YSPSTPALAVSSPGY 505
                 +  + A++P SP+Y  TSP +G        SP++P    +SPG+
Sbjct: 1658 -----SPTSPAFSPTSPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPGW 1701

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 49/158 (31%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
 Frame = +2

Query: 14   SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY-- 187
            S R   SP    +   + P          A+  A   + +YSP    +PG +  SP Y  
Sbjct: 1596 SPRFMTSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPT---SPGFSPTSPNYSP 1652

Query: 188  TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG------- 346
            T P  FSP   + +FSP   S      A  G      SP    +P+ +P SPG       
Sbjct: 1653 TSPS-FSP--TSPAFSPTSPSYSPTSPAIGGARH--LSPTSPTSPKYTPTSPGWSPTSPQ 1707

Query: 347  -YAAMSPRFGGG--LGGGPAGGAGAYAPASPAYMATSP 451
             Y+  SP F G     GGP   +  Y+P SPA+  TSP
Sbjct: 1708 TYSPTSPNFAGSPTSPGGPT--SPGYSPTSPAFSPTSP 1743

[62][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
            RepID=C1EA31_9CHLO
          Length = 1720

 Score = 70.1 bits (170), Expect = 8e-11
 Identities = 55/162 (33%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
 Frame = +2

Query: 56   RGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTP--GGTAFSPAYTGPG---------G 202
            RG TPGREG          AM+P++  SP    +P      FSP  T  G         G
Sbjct: 1477 RGITPGREG----------AMSPSFLLSPTAHMSPFDDSMRFSPQGTDYGSHAGGGQSPG 1526

Query: 203  FSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            +SP + A +  SP  S    A   T    +P        +P  SP SP Y+  SP +   
Sbjct: 1527 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--- 1583

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + AY+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1584 -----SPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPAY 1618

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 3/171 (1%)
 Frame = +2

Query: 2    DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAF 175
            D  + A   +SP    +   Y+P          A+    +PT  AYSP   A +P   A+
Sbjct: 1514 DYGSHAGGGQSPGYSPTSPAYSPTSPAYSPTSPAY----SPTSPAYSPTSPAYSPTSPAY 1569

Query: 176  SPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
            SP  T P  +SP + A +  SP  S    A   T    +P        +P  SP SP Y+
Sbjct: 1570 SP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1626

Query: 353  AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              SP +        +  + AY+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1627 PTSPAY--------SPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPQY 1667

[63][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
            RepID=C4JY44_UNCRE
          Length = 1747

 Score = 70.1 bits (170), Expect = 8e-11
 Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
 Frame = +2

Query: 2    DAAASARIARSP-------AMPESERGYTP-GREGQRTPGRAFDAAMTPTYA-YSPARAR 154
            D AA+   + SP       + P+ +  ++P G+ G  TP   F     P +  +SPA AR
Sbjct: 1454 DGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPA-GFTEYQPPGFGGFSPAGAR 1512

Query: 155  TPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
            +PGG  +SP        SP N + +                   +PG SP+  +    SP
Sbjct: 1513 SPGG-GYSPT-------SPFNTSPT-------------------SPGYSPSSGY----SP 1541

Query: 335  ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG--YSPSTPALAVSSPGY 505
             SPG    SPRF    G  PA  + ++AP SPAY  TSPG G   SP++P+ + +SPG+
Sbjct: 1542 TSPGMGITSPRFMTSPGFSPA--SPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGF 1598

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 51/165 (30%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
 Frame = +2

Query: 14   SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187
            S R   SP    +   + P           +  A +PT  +YSP    +PG +  SP+Y 
Sbjct: 1550 SPRFMTSPGFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1606

Query: 188  -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
             T P  FSP  A+ +FSP   S      A  G      SP    +P+ +P SPG++  SP
Sbjct: 1607 PTSPS-FSP--ASPAFSPTSPSYSPTSPALGGVTGRHLSPTSPTSPKYTPTSPGWSPTSP 1663

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMA--TSPGM-----GYSPSTP 478
                           AY+P SP +    TSPG      GYSP++P
Sbjct: 1664 --------------DAYSPTSPNFAGSPTSPGWSLLPPGYSPTSP 1694

[64][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
            tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
          Length = 1706

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 56/148 (37%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
 Frame = +2

Query: 71   GREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMS- 247
            G  G    G A   A TP +A SP       G A SP   G   FSP    ASFSP  S 
Sbjct: 1440 GMAGVGGVGGATPYATTP-FAASPM---VGDGAAASPFVDGGAAFSPAVGAASFSPAYSP 1495

Query: 248  -SADAAGRATPGRMTPGRSPA-GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 421
             S         G    G SPA    +P+ SP SP Y+  SP +        +  + AY+P
Sbjct: 1496 DSGSYGSGFASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAY--------SPTSPAYSP 1547

Query: 422  ASPAYMATSPGMGYSPSTPALAVSSPGY 505
             SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1548 TSPAYSPTSP--AYSPTSPAYSPTSPAY 1573

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 55/164 (33%), Positives = 75/164 (45%), Gaps = 6/164 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPAR-ARTPGGTAFSPAYTGP 196
            SPA   +   Y+P          A+     A +PT  AYSP   A +P   A+SP  T P
Sbjct: 1542 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP--TSP 1599

Query: 197  GGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
              +SP + A +  SP  S    A   T    +P        +P  SP SP Y+  SP + 
Sbjct: 1600 A-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY- 1657

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   +  + AY+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1658 -------SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1692

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 59/175 (33%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPAR-ARTPGGT 169
            A+ S     SPA   +   Y+P          A+     A +PT  AYSP   A +P   
Sbjct: 1505 ASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1564

Query: 170  AFSPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG 346
            A+SP  T P  +SP + A +  SP  S    A   T    +P        +P  SP SP 
Sbjct: 1565 AYSP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1621

Query: 347  YAAMSPRFGGGLGGGPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            Y+  SP +       PA    + AY+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1622 YSPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1671

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 58/178 (32%), Positives = 78/178 (43%), Gaps = 12/178 (6%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQR-----TPGRAFDAAMTPTY-----AYSPAR-AR 154
            AAS   A SP       G+  G  G       +P     +  +P Y     AYSP   A 
Sbjct: 1486 AASFSPAYSPDSGSYGSGFASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAY 1545

Query: 155  TPGGTAFSPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            +P   A+SP  T P  +SP + A +  SP  S    A   T    +P        +P  S
Sbjct: 1546 SPTSPAYSP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1602

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P SP Y+  SP +        +  + AY+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1603 PTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1650

[65][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9TK89_PHYPA
          Length = 1646

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 3/160 (1%)
 Frame = +2

Query: 35   PAMPESERGYTPGREGQ-RTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            P+   ++ G TP R     TP    +  M+P+Y  SP+   +P   A    Y G   FSP
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHN--EGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSP 1523

Query: 212  INATASFSPIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
              ++  +SP          ++PG   ++PG SP    +P  SP SPGY+  SP       
Sbjct: 1524 --SSPGYSP----------SSPGYSPLSPGYSPT---SPGYSPTSPGYSPTSP------- 1561

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             G +  + +Y+P SP Y  TSPG  YSP++P+ + +SP Y
Sbjct: 1562 -GYSPTSPSYSPTSPGYSPTSPG--YSPTSPSYSPTSPSY 1598

[66][TOP]
>UniRef100_B8M2Y2 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
            RepID=B8M2Y2_TALSN
          Length = 1755

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 60/176 (34%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
 Frame = +2

Query: 2    DAAASARIARSPAMPESERGY--TPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTA 172
            D AA+     SP M   E GY  TP  + + +P R   +     + +Y P++    G   
Sbjct: 1502 DGAATQYDNNSPMM---ENGYIGTPDPDAKFSPIRQAGSETPAGFTSYQPSQ----GLGG 1554

Query: 173  FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
            FSPA   PGG+SP       SP  +S           ++PG SP+  +    SPASPG +
Sbjct: 1555 FSPAPQSPGGYSPT------SPFNTSP----------VSPGYSPSSSY----SPASPGMS 1594

Query: 353  AMSPRFGGGLGGGPAG-----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              SPRF    G  P+       + AY+P SP+Y   SP   YSP++P  + SSP Y
Sbjct: 1595 ITSPRFVTSPGFSPSSPNFQTTSPAYSPTSPSYQQASP--SYSPTSPRFSPSSPNY 1648

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 57/181 (31%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            SPA P+S  GY+P      +P        +P+ +YSPA   +PG +  SP +    GFSP
Sbjct: 1556 SPA-PQSPGGYSPTSPFNTSP---VSPGYSPSSSYSPA---SPGMSITSPRFVTSPGFSP 1608

Query: 212  IN--------ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-------PASPG 346
             +        A +  SP    A  +   T  R +P        +P MS       P SP 
Sbjct: 1609 SSPNFQTTSPAYSPTSPSYQQASPSYSPTSPRFSPSSPNYSPSSPNMSLSSPAFSPTSPT 1668

Query: 347  YAAMSPRFGGGLGGGPAGGAGAYAPASPA--------YMATSPGMGYSPSTPALAVSSPG 502
            Y+  SP   GG     +  +  Y+PASPA        Y  TSP +  SP++PA   +SP 
Sbjct: 1669 YSPTSPAI-GGTRQFSSPTSPKYSPASPAWSPTSPEIYSPTSPNIHGSPTSPARGGTSPS 1727

Query: 503  Y 505
            Y
Sbjct: 1728 Y 1728

[67][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
            RepID=UPI0000D5670C
          Length = 2007

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 5/172 (2%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSP 181
            +AA+  ++   AM    +G TP      +P     + MTP   A+SP+ A    G   SP
Sbjct: 1500 SAATPSMSPGAAMTPWNQGATPYVGSAWSPHNLMGSGMTPGGPAFSPSAASDASG--MSP 1557

Query: 182  AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGY 349
             Y   G +SP   + + SP M+S        P   +P  SP+       +P M+P SPGY
Sbjct: 1558 GY---GAWSPTPQSPAMSPFMAS--------PHGQSPSYSPSSPSFQPTSPSMTPVSPGY 1606

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP        G +  +  Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1607 SPTSP--------GYSPTSPNYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1648

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAA-MTPTY-AYSPARARTPGGTAFSPAYTGPGGFSPINATASF 232
            G TPG     +P  A DA+ M+P Y A+SP    TP   A SP    P G SP  + +S 
Sbjct: 1536 GMTPGGPAF-SPSAASDASGMSPGYGAWSP----TPQSPAMSPFMASPHGQSPSYSPSSP 1590

Query: 233  SPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
            S    ++ +    +PG    +PG SP    +P  SP SP Y+  SP +        +  +
Sbjct: 1591 S-FQPTSPSMTPVSPGYSPTSPGYSPT---SPNYSPTSPSYSPTSPSY--------SPTS 1638

Query: 407  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1639 PSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1669

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPG--------REGQRTPGRAFDAAMTPTYAYSPA--RARTPGGTAF 175
            A SP+      G +PG        +    +P  A     +P+Y+ S    +  +P  T  
Sbjct: 1543 AFSPSAASDASGMSPGYGAWSPTPQSPAMSPFMASPHGQSPSYSPSSPSFQPTSPSMTPV 1602

Query: 176  SPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG 346
            SP Y  T PG +SP +   S  SP  S    +   T    +P        +P  SP SP 
Sbjct: 1603 SPGYSPTSPG-YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1661

Query: 347  YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            Y+  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1662 YSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1704

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
 Frame = +2

Query: 29   RSPAMPE---SERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--T 190
            +SPAM     S  G +P         +    +MTP    YSP    +PG +  SP Y  T
Sbjct: 1567 QSPAMSPFMASPHGQSPSYSPSSPSFQPTSPSMTPVSPGYSPT---SPGYSPTSPNYSPT 1623

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1624 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1682

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1683 YSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1725

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   +   Y+P          ++    +P+Y+     YSP+  R TP   ++SP    
Sbjct: 1701 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPSSPRYTPASPSYSPTSPS 1759

Query: 194  PGGFSP--INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
                SP    A+ SFSP   S+      +P       S AG  +P+ SP SP Y+  SP 
Sbjct: 1760 YSPSSPQYSPASPSFSP---SSPKYSPTSPSYSPTSPSFAGG-SPQYSPTSPSYSPTSPN 1815

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPSTPALAVSSPGY 505
            +           +  Y+P+SP Y  +SP               YSP++P    +SP Y
Sbjct: 1816 YSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSPHSTKYSPTSPTYTPTSPSY 1873

[68][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
            RepID=Q99368_SOYBN
          Length = 977

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
            G TP  EG           M+P+Y  SP    +P   A    Y G   FSP +++  +SP
Sbjct: 684  GATPYHEG---------TMMSPSYLLSPNLRLSPSSDAQFSPYVGGMAFSP-SSSPGYSP 733

Query: 239  IMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
                      ++PG    +PG SP    +P  SP SPGY+  SP +      G +  + A
Sbjct: 734  ----------SSPGYSPSSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGYSPTSPA 779

Query: 413  YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            Y+P SP+Y  TSP   YSP++PA + +SP Y
Sbjct: 780  YSPTSPSYSPTSP--AYSPTSPAYSSTSPAY 808

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 55/180 (30%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG-- 199
            SP    S  GY+P   G       +    +PTY+ S     +PG +  SPAY  T P   
Sbjct: 735  SPGYSPSSPGYSPTSPGYSPTSPGYSPT-SPTYSPS-----SPGYSPTSPAYSPTSPSYS 788

Query: 200  ----GFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
                 +SP + A +S SP  S    +   T    +P        +P  SP SP Y+  SP
Sbjct: 789  PTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSP 848

Query: 365  RFGGGLGGGPAGG--AGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSPGY 505
             +       PA    + +Y+P SP+Y  TSP            + YSPS+P L+ +SP Y
Sbjct: 849  SYSPT---SPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNY 905

[69][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
            RepID=C1MI48_9CHLO
          Length = 1694

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 48/129 (37%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
 Frame = +2

Query: 137  SPARARTPGGT-AFSPAY--TGPGGFSPINATASFSPIMSSADAAGRATP---GRMTPGR 298
            +PAR  TPGG  + SP++  +     SP + T  FSP        G          +PG 
Sbjct: 1476 TPARGTTPGGVGSASPSFLLSPQAHASPFDDTMRFSPYTEGGGGGGGGDGMGFSPTSPGY 1535

Query: 299  SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 478
            SP    +P  SP SP Y+  SP +       PA  + AY+P SPAY  TSP   YSP++P
Sbjct: 1536 SPT---SPAYSPTSPAYSPTSPAYSPT---SPAPTSPAYSPTSPAYSPTSP--AYSPTSP 1587

Query: 479  ALAVSSPGY 505
            A + +SP Y
Sbjct: 1588 AYSPTSPAY 1596

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 51/151 (33%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAYTGPGGFSPIN-ATASF 232
            G++P   G      A+    +PT  AYSP    +P  +  SPA T P  +SP + A +  
Sbjct: 1527 GFSPTSPGYSPTSPAY----SPTSPAYSPT---SPAYSPTSPAPTSPA-YSPTSPAYSPT 1578

Query: 233  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
            SP  S    A   T    +P        +P  SP SP Y+  SP               A
Sbjct: 1579 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP---------------A 1623

Query: 413  YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            Y+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1624 YSPTSPAYSPTSP--AYSPTSPAYSPTSPQY 1652

[70][TOP]
>UniRef100_B6QAY2 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224
            RepID=B6QAY2_PENMQ
          Length = 1744

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 59/180 (32%), Positives = 78/180 (43%), Gaps = 12/180 (6%)
 Frame = +2

Query: 2    DAAASARIARSPAMPESERGY--TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGG--- 166
            D AA+     SP M   E GY  TP  + + +P R              A A TPGG   
Sbjct: 1502 DGAATQYDNNSPMM---ENGYIGTPDPDAKFSPIRQ-------------AGAETPGGFTA 1545

Query: 167  -------TAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPR 325
                     FSPA   PGG+SP       SP  +S  + G +     +P        +PR
Sbjct: 1546 YQPSGGLGGFSPAPQSPGGYSPT------SPFNTSPVSPGYSPSSSYSPSSPNMSVTSPR 1599

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                SPG++  SP F        A  + AY+P SP++ ATSP   YSP++P  + SSP Y
Sbjct: 1600 FMSTSPGFSPQSPAF--------AITSPAYSPTSPSFQATSP--SYSPTSPRFSPSSPNY 1649

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 28/186 (15%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SPA P+S  GY+P      +P        +P+ +YSP+   +P  +  SP +  T PG F
Sbjct: 1556 SPA-PQSPGGYSPTSPFNTSP---VSPGYSPSSSYSPS---SPNMSVTSPRFMSTSPG-F 1607

Query: 206  SPIN-ATASFSPIMSSADAAGRATP-----------------GRMTPGRSPAGRFTPRMS 331
            SP + A A  SP  S    + +AT                     +P  SPA   +P  S
Sbjct: 1608 SPQSPAFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPNYSPSSPNFSPA---SPAFS 1664

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY--------MATSPGMGYSPSTPALA 487
            P+SP Y+  SP  GG      +  +  Y+PASP +          TSP +  SP++PA  
Sbjct: 1665 PSSPTYSPTSPAIGGRQFSPSSPSSPKYSPASPGWSPTSPEIYSPTSPNIHGSPTSPARG 1724

Query: 488  VSSPGY 505
             +SP Y
Sbjct: 1725 ATSPSY 1730

[71][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SXC0_RICCO
          Length = 1855

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
 Frame = +2

Query: 62   YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220
            Y  G +   TP R+        D  M+P+Y  SP+   +P   A    Y     FSP   
Sbjct: 1481 YMDGLDFGMTPARSPVSVTPYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPFSP-TL 1539

Query: 221  TASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394
            +  +SP   S+     ++PG    +PG SP    +P  SP SPGY+  SP +      G 
Sbjct: 1540 SPGYSP---SSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGY 1592

Query: 395  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  + AY+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1593 SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1627

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 12/170 (7%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P      +P     +  +P Y     AYSP    +P  +  SP+Y  T
Sbjct: 1624 SPSYSPTSPSYSPTSPSY-SPTSPVYSPTSPAYSPTSPAYSPT---SPSYSPTSPSYSPT 1679

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    A   T    +P        +P  SP SP Y   S +
Sbjct: 1680 SPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAK 1738

Query: 368  FGGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +   L   P+      +  Y+P SP Y  TSP   YSP++P+ + SSP Y
Sbjct: 1739 YSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 1786

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y     AYSP    +PG +  SP+Y  T
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 1721

Query: 191  GPGGFSPINAT-----ASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASP 343
             P  +SP + +     A +SP ++ + ++ R +P       +P  SP    +P  SP SP
Sbjct: 1722 SPS-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPT---SPSYSPTSP 1777

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
             Y+  SP +          G   Y+P+SP Y   SP  GYSPS P  + SS
Sbjct: 1778 SYSPSSPTYSPSSPYNSGVGPD-YSPSSPQY---SPSAGYSPSAPGYSPSS 1824

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPAR-ARTPGGTAFSPAYTG 193
            SP    S  GY+P          ++    +P+Y+     YSP   + +P   ++SP    
Sbjct: 1582 SPTYSPSSPGYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640

Query: 194  PGGFSPINATAS-----FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
                SP+ +  S      SP  S    +   T    +P        +P  SP SP Y+  
Sbjct: 1641 YSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1700

Query: 359  SPRFGGGLGGGPAGGAGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSP 499
            SP +      G +  + +Y+P SP+Y  TSP            + YSPS+P L+ SSP
Sbjct: 1701 SPAYSP-TSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSP 1757

[72][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
            RepID=Q0D054_ASPTN
          Length = 1742

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 59/175 (33%), Positives = 81/175 (46%), Gaps = 9/175 (5%)
 Frame = +2

Query: 2    DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
            D AA+     SP M ES    TP  +   +P R   A     +      A   GG  FSP
Sbjct: 1502 DGAATQYDTGSP-MQESAYIGTPDPDSNFSPIRQAGAESPGGFTEYQPTAGFGGG--FSP 1558

Query: 182  AYTGPGGFSPIN------ATASFSPIMS---SADAAGRATPGRMTPGRSPAGRFTPRMSP 334
            A T P G+SP +       + S+SP  S   ++   G  +P   +PG SPA   +P   P
Sbjct: 1559 APTSPLGYSPGSPFSGGATSPSYSPSSSYSPTSPGMGITSPRMTSPGFSPA---SPAFGP 1615

Query: 335  ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
             SP Y+  SP +G      P     +Y+P SP +  TSP   YSP++P L+ +SP
Sbjct: 1616 TSPAYSPTSPAYGQASPTSP-----SYSPTSPGFSPTSP--NYSPTSPNLSPASP 1663

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 60/167 (35%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            SPA P S  GY+PG       G A   + +P+ +YSP    +PG    SP  T PG FSP
Sbjct: 1557 SPA-PTSPLGYSPGSPFS---GGATSPSYSPSSSYSPT---SPGMGITSPRMTSPG-FSP 1608

Query: 212  IN-ATASFSPIMS-SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
             + A    SP  S ++ A G+A+P   +P  SP    +P  SP SP Y+  SP       
Sbjct: 1609 ASPAFGPTSPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPNLS---- 1659

Query: 386  GGPAGGAGAYAPASPAYMATSPGMG-------YSPSTPALAVSSPGY 505
              PA  +  ++P SP+Y  TSP +G        SP++P    +SPG+
Sbjct: 1660 --PA--SPVFSPTSPSYSPTSPALGAGRNMSPTSPTSPKYTPTSPGW 1702

[73][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
            RepID=B2AA31_PODAN
          Length = 1748

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 53/161 (32%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
 Frame = +2

Query: 50   SERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229
            +E G  PG   +   G    +++ P YA SP R  +P  T  SP      G+SP +  A 
Sbjct: 1534 NESGGPPGFASEYGGGGYGSSSVNP-YATSPGRPTSPFTT--SPTSPFSYGYSPTSPAAG 1590

Query: 230  FSPIMSSADAAGR--ATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--- 388
            +SP     DA GR  ++P     +P  SP        SP SP Y+  SP +         
Sbjct: 1591 YSPTSPLIDAGGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTSPSYSPASPAATR 1650

Query: 389  --GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               P   A   +P SP+Y  TSP   YSP++PA   +SP Y
Sbjct: 1651 HYSPTSPAQFQSPTSPSYSPTSP--SYSPASPAFQATSPSY 1689

[74][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb01 RepID=C1H3Q4_PARBA
          Length = 1748

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
 Frame = +2

Query: 2    DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
            D AA+   + SP         P+ +  ++P R+ G  TP   F     P ++  +SP  A
Sbjct: 1505 DGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPA-GFTEYQAPGFSGGFSPHGA 1563

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            R+PGG  +SP+       SP N + +                   +P  SP+  +    S
Sbjct: 1564 RSPGG-GYSPS-------SPFNTSPT-------------------SPRYSPSSGY----S 1592

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P SPG +  SPRF    G  PA  +  +AP SPAY  TSPG   SP++P+ + +SPG+
Sbjct: 1593 PTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1648

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 39/193 (20%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYT 190
            P    G++P   G R+PG  +  +            +P+  YSP    +PG +  SP + 
Sbjct: 1552 PGFSGGFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFM 1606

Query: 191  GPGGFSPINAT-ASFSPIMSSADAAGRATP-----GRMTPGRSPAGR-----------FT 319
               GFSP +   A  SP  S      + +P        +PG SP               +
Sbjct: 1607 SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPNYSPTSPSFSPAS 1666

Query: 320  PRMSPASPGYAAMSPRFGGGLG---GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
            P  SP SP Y+  SP  GG  G      +  +  Y P SP +  TSP   YSP++P  + 
Sbjct: 1667 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPET-YSPTSPNFSG 1725

Query: 491  S--------SPGY 505
            S        SPGY
Sbjct: 1726 SPTSPGGPTSPGY 1738

[75][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb18 RepID=C1GHL1_PARBD
          Length = 1746

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
 Frame = +2

Query: 2    DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
            D AA+   + SP         P+ +  ++P R+ G  TP   F     P ++  +SP  A
Sbjct: 1500 DGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPA-GFTEYQAPGFSGGFSPHGA 1558

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            R+PGG  +SP+       SP N + +                   +P  SP+  +    S
Sbjct: 1559 RSPGG-GYSPS-------SPFNTSPT-------------------SPRYSPSSGY----S 1587

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P SPG +  SPRF    G  PA  +  +AP SPAY  TSPG   SP++P+ + +SPG+
Sbjct: 1588 PTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1643

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 39/193 (20%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYT 190
            P    G++P   G R+PG  +  +            +P+  YSP    +PG +  SP + 
Sbjct: 1547 PGFSGGFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFM 1601

Query: 191  GPGGFSPINAT-ASFSPIMSSADAAGRATP-----GRMTPGRSPAGRF-----------T 319
               GFSP +   A  SP  S      + +P        +PG SP               +
Sbjct: 1602 SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPAS 1661

Query: 320  PRMSPASPGYAAMSPRFGGGLG---GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
            P  SP SP Y+  SP  GG  G      +  +  Y P SP +  TSP   YSP++P  + 
Sbjct: 1662 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPET-YSPTSPNFSG 1720

Query: 491  S--------SPGY 505
            S        SPGY
Sbjct: 1721 SPTSPGGPTSPGY 1733

[76][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb03 RepID=C0SE75_PARBP
          Length = 2106

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
 Frame = +2

Query: 2    DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
            D AA+   + SP         P+ +  ++P R+ G  TP   F     P ++  +SP  A
Sbjct: 1500 DGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPA-GFTEYQAPGFSGGFSPHGA 1558

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            R+PGG  +SP+       SP N + +                   +P  SP+  +    S
Sbjct: 1559 RSPGG-GYSPS-------SPFNTSPT-------------------SPRYSPSSGY----S 1587

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P SPG +  SPRF    G  PA  +  +AP SPAY  TSPG   SP++P+ + +SPG+
Sbjct: 1588 PTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1643

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 39/193 (20%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYT 190
            P    G++P   G R+PG  +  +            +P+  YSP    +PG +  SP + 
Sbjct: 1547 PGFSGGFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFM 1601

Query: 191  GPGGFSPINAT-ASFSPIMSSADAAGRATP-----GRMTPGRSPAGRF-----------T 319
               GFSP +   A  SP  S      + +P        +PG SP               +
Sbjct: 1602 SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPAS 1661

Query: 320  PRMSPASPGYAAMSPRFGGGLG---GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
            P  SP SP Y+  SP  GG  G      +  +  Y P SP +  TSP   YSP++P  + 
Sbjct: 1662 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPET-YSPTSPNFSG 1720

Query: 491  S--------SPGY 505
            S        SPGY
Sbjct: 1721 SPTSPGGPTSPGY 1733

[77][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 9 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1E
          Length = 1851

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229
            GY+P      TPG       +  Y  SP  A +P  +  SPAY    PGG++P + + S 
Sbjct: 1497 GYSPA--WSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1554

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
             SP  S    +   T    +P        +P  SP SP Y+  SP +        +  + 
Sbjct: 1555 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1606

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1607 SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1636

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGG-TAFSPAY--TGPG 199
            SP  P     Y P      +PG A   + +PT  AY P   R+PGG T  SP+Y  T P 
Sbjct: 1508 SPGSPGPSSPYIP------SPGGAMSPSYSPTSPAYEP---RSPGGYTPQSPSYSPTSPS 1558

Query: 200  GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
             +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP +  
Sbjct: 1559 -YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1617

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                  +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1618 -TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1657

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 38/105 (36%), Positives = 54/105 (51%)
 Frame = +2

Query: 191  GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            G  GFSP   + ++SP   S  + G ++P   +PG    G  +P  SP SP Y   SP  
Sbjct: 1490 GRDGFSP-GYSPAWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPTSPAYEPRSP-- 1542

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1543 -----GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1580

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 9/167 (5%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   +   Y+P R    TP     +  +P+Y+     YSP   + TP   ++SP+   
Sbjct: 1675 SPSYSPTSPNYSPSRPNY-TPTSPSYSPTSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPE 1733

Query: 194  PGGFSPINATAS--FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
                SP  +  S  +SP  S   +    T    TP  SP    +P  SP SP Y   SP+
Sbjct: 1734 YTPTSPKYSPTSPKYSPT-SPKYSPTSPTYSPTTPKYSPT---SPTYSPTSPVYTPTSPK 1789

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
            +        +  +  Y+P SP Y  TSP G  YSP++P  + +SP Y
Sbjct: 1790 YSP-TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1835

[78][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 8 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1C
          Length = 1719

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229
            GY+P      TPG       +  Y  SP  A +P  +  SPAY    PGG++P + + S 
Sbjct: 1490 GYSPA--WSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1547

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
             SP  S    +   T    +P        +P  SP SP Y+  SP +        +  + 
Sbjct: 1548 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1599

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1600 SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1629

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 40/116 (34%), Positives = 57/116 (49%)
 Frame = +2

Query: 158  PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
            P  + FSP      G+SP     ++SP   S  + G ++P   +PG    G  +P  SP 
Sbjct: 1482 PDASGFSP------GYSP-----AWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPT 1526

Query: 338  SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            SP Y   SP       GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1527 SPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1573

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP        +P  +  S
Sbjct: 1518 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1577

Query: 179  PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
            P+Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y
Sbjct: 1578 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1636

Query: 350  AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
            +  SP +              +  + +Y+P SP+Y  TSP               YSP++
Sbjct: 1637 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1696

Query: 476  PALAVSSPGY 505
            P+ + +SP Y
Sbjct: 1697 PSYSPTSPNY 1706

[79][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 7 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1B
          Length = 1858

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229
            GY+P      TPG       +  Y  SP  A +P  +  SPAY    PGG++P + + S 
Sbjct: 1490 GYSPA--WSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1547

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
             SP  S    +   T    +P        +P  SP SP Y+  SP +        +  + 
Sbjct: 1548 TSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1599

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1600 SYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1629

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 40/116 (34%), Positives = 57/116 (49%)
 Frame = +2

Query: 158  PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
            P  + FSP      G+SP     ++SP   S  + G ++P   +PG    G  +P  SP 
Sbjct: 1482 PDASGFSP------GYSP-----AWSPTPGSPGSPGPSSPYIPSPG----GAMSPSYSPT 1526

Query: 338  SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            SP Y   SP       GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1527 SPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSY 1573

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1591 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1646

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P R      +P  SP SP Y+  SP 
Sbjct: 1647 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPN 1705

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +   +    +  + +Y+P SP Y  TSP   YSPS+P    +SP Y
Sbjct: 1706 Y-TPMSPNYSPTSPSYSPTSPKYTPTSP--SYSPSSPEYTPTSPKY 1748

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   +   Y+P          ++    +P+Y+     YSP+R   TP   ++SP  T 
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSP--TS 1696

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP +   +  SP  S    +   T  + TP        +P  +P SP Y+  SP+ 
Sbjct: 1697 PS-YSPTSPNYTPMSPNYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK- 1754

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                          Y+P SP Y  TSP   YSP+TP  + +SP Y
Sbjct: 1755 --------------YSPTSPKYSPTSP--TYSPTTPKYSPTSPTY 1783

[80][TOP]
>UniRef100_Q4QZ03 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum tuberosum
           RepID=Q4QZ03_SOLTU
          Length = 361

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 60/172 (34%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
 Frame = +2

Query: 53  ERGYTPGREG-QRTPGRAFDAAMTPTYAYSPARARTP----------GGTAFSPAYTGPG 199
           E G TPGR     TP    D  M+P Y  SP    +P          GG AFSP  T   
Sbjct: 66  EFGMTPGRSPISGTPYH--DGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAFSP--TSSP 121

Query: 200 GFSPINATASFSPIMSSADAAGRA--TPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 367
           G+SP +   S S    S  + G +  +PG    +PG SP    +P  SP+SPGY+  SP 
Sbjct: 122 GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPTSPA 178

Query: 368 FG------GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           +              +  + +Y+P SP+Y  TSP   YSP++PA + +SP Y
Sbjct: 179 YSPTSPSYSPTSPSYSPTSSSYSPTSPSYSPTSP--IYSPTSPAYSPTSPAY 228

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 18/176 (10%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPAR-ARTPGGTAFSPAYTG 193
           SP+   +   Y+P      +P     +  +P Y     AYSP   A +P   ++SP    
Sbjct: 190 SPSYSPTSSSYSPTSPSY-SPTSPIYSPTSPAYSPTSPAYSPTSPAYSPTLPSYSPTLPS 248

Query: 194 PGGFSPINA--TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP- 364
               SP  +  + S+SP   S      A     +PG SP    +P  SP SP Y+  SP 
Sbjct: 249 YSPTSPSYSPTSPSYSPTSPSYSPTFPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPS 304

Query: 365 -----RFGGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                R+   L   P       +  Y+P+SP+Y  TSP   YSP++P+ + SSP Y
Sbjct: 305 YNPSARYSPSLAYSPTSPKLSPSSPYSPSSPSYSPTSPS--YSPTSPSYSPSSPTY 358

[81][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
            RepID=C5GKA7_AJEDR
          Length = 1746

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 54/164 (32%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAF--DAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASF 232
            G      G  T G+    D A TP  + SP R     G+    +   P   +     A F
Sbjct: 1481 GVVSSNAGLMTDGKGLLGDGAATPYDSSSPLRDNMYIGSPDPDSNFSPIRQAGSETPAGF 1540

Query: 233  SPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFG 373
            +    S  + G +  G  +PG   SP   F     +PR SP+S      PG +  SPRF 
Sbjct: 1541 TEYQPSGFSGGFSPHGARSPGGGYSPTSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFM 1600

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               G  PA  + A+AP SPAY  TSPG   SP++P+ + +SPG+
Sbjct: 1601 SSPGFSPA--SPAFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1642

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205
            G++P   G R+PG  +               +P+  YSP    +PG +  SP +    GF
Sbjct: 1551 GFSP--HGARSPGGGYSPTSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 1605

Query: 206  SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + A A  SP  S      + +P   +P  SP    +P  SP SP Y+  SP F    
Sbjct: 1606 SPASPAFAPTSPAYSPTSPGYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 1657

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505
               PA  + A++P SP+Y  TSP +G          SP++P    +SPG+
Sbjct: 1658 ---PA--SPAFSPTSPSYSPTSPALGISTGRHLSPTSPTSPKYTPTSPGW 1702

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 10/178 (5%)
 Frame = +2

Query: 2    DAAASARIARSP-------AMPESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
            D AA+   + SP         P+ +  ++P R+ G  TP   F       ++  +SP  A
Sbjct: 1499 DGAATPYDSSSPLRDNMYIGSPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 1557

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            R+PGG  +SP        SP N T+  SP  S +      +PG      SP    +P  S
Sbjct: 1558 RSPGG-GYSPT-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 1606

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            PASP +A  SP               AY+P SP Y  +     YSP++P  + +SP Y
Sbjct: 1607 PASPAFAPTSP---------------AYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSY 1649

[82][TOP]
>UniRef100_Q9BIT5 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila inaurata
           madagascariensis RepID=Q9BIT5_9ARAC
          Length = 563

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 58/182 (31%), Positives = 78/182 (42%), Gaps = 16/182 (8%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           AAA+A  A  P   +   GY PG++G    G +   +     A  P   + PGG  + P 
Sbjct: 258 AAAAAAAAAGPGQ-QGPGGYGPGQQGPGQQGPSGPGSAAAAAAAGPG-PQGPGG--YGPG 313

Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPG 346
             GPGG+ P       S   S+A AA  A PG+  PG      + P+G    +  P+ PG
Sbjct: 314 QQGPGGYGP-------SGPGSAAAAAAAAGPGQQGPGGYGPGQQRPSGYGPGQQGPSGPG 366

Query: 347 YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-GYSP---------STPALAVSS 496
            AA +   G G       G GAY P+ P   A + G+ GY P         S  A A + 
Sbjct: 367 SAAAAAAAGPG-----QQGPGAYGPSGPGSAAAAAGLGGYGPAQQGPSGAGSAAAAAAAG 421

Query: 497 PG 502
           PG
Sbjct: 422 PG 423

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 57/164 (34%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
           GY PG++G   PG A  AA     A  P + + PGG  + P   GPGG+ P     S  P
Sbjct: 205 GYGPGQQGPSGPGSAAAAA-----AAGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPS-GP 255

Query: 239 IMSSADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMS------PRFGGGLGGGPA 397
             ++A AA  A PG+  PG    G+  P +  P+ PG AA +      P+  GG G G  
Sbjct: 256 GSAAAAAAAAAGPGQQGPGGYGPGQQGPGQQGPSGPGSAAAAAAAGPGPQGPGGYGPGQQ 315

Query: 398 GGAGAYAPASP-----AYMATSPGM----GYSPSTPALAVSSPG 502
            G G Y P+ P     A  A  PG     GY P     +   PG
Sbjct: 316 -GPGGYGPSGPGSAAAAAAAAGPGQQGPGGYGPGQQRPSGYGPG 358

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 56/170 (32%), Positives = 72/170 (42%), Gaps = 22/170 (12%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
           GY PG++G   PG A  AA     A + +  + PGG  + P   GPGG+ P     S   
Sbjct: 86  GYGPGQQGPSGPGSAASAA-----AAAGSGQQGPGG--YGPGQQGPGGYGPGQQGPSGPG 138

Query: 239 IMSSADAA--GRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFGG----GLGG--- 388
             ++A AA  G+  PG   PG+   G + P +  P+ PG AA +    G    G GG   
Sbjct: 139 SAAAAAAAGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAGPGQQGPGGYGP 198

Query: 389 ---GPAG-GAGAYAPASP----AYMATSPGM----GYSPSTPALAVSSPG 502
              GP G G G   P+ P    A  A  PG     GY P         PG
Sbjct: 199 GQQGPGGYGPGQQGPSGPGSAAAAAAAGPGQQGPGGYGPGQQGPGGYGPG 248

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 49/152 (32%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
           GY PG++G   PG A  AA     A  P + + PGG  + P   GPGG+ P     S   
Sbjct: 126 GYGPGQQGPSGPGSAAAAA-----AAGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPSGPG 177

Query: 239 IMSSADAA---GRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFGGGLGGGPAGGA 406
             ++A AA   G+  PG   PG+   G + P +  P+ PG AA +   G G  G    G 
Sbjct: 178 SAAAAAAAAGPGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAGPGQQGPGGYGP 237

Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
           G   P         P    S +  A A + PG
Sbjct: 238 GQQGPGGYGPGQQGPSGPGSAAAAAAAAAGPG 269

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 56/181 (30%), Positives = 71/181 (39%), Gaps = 33/181 (18%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP-INATASFS 235
           GY PG++G   PG A  AA     A  P + + PGG  + P   GPGG+ P     + + 
Sbjct: 34  GYGPGQQGPSGPGSA--AAAAAAAAAGPGQ-QGPGG--YGPGPQGPGGYGPGQQGPSGYG 88

Query: 236 PIM-------SSADAAGRATPGRMTPG------RSPAGRFTPRMSPASPGYAAMSPRFG- 373
           P         S+A AA  A  G+  PG      + P G    +  P+ PG AA +   G 
Sbjct: 89  PGQQGPSGPGSAASAAAAAGSGQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAGP 148

Query: 374 -----GGLGGGPAG----GAGAYAPASP-----AYMATSPGM----GYSPSTPALAVSSP 499
                GG G G  G    G G   P+ P     A  A  PG     GY P         P
Sbjct: 149 GQQGPGGYGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAGPGQQGPGGYGPGQQGPGGYGP 208

Query: 500 G 502
           G
Sbjct: 209 G 209

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 56/175 (32%), Positives = 70/175 (40%), Gaps = 11/175 (6%)
 Frame = +2

Query: 5   AAASARIARSPAM-------PESER--GYTPGREGQRTPGRAFDAAMTPTYAYSPARART 157
           +AA+A  A  P         P  +R  GY PG++G   PG A  AA        P  A  
Sbjct: 327 SAAAAAAAAGPGQQGPGGYGPGQQRPSGYGPGQQGPSGPGSAAAAAAAGPGQQGPG-AYG 385

Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
           P G   + A  G GG+ P     S +   ++A AAG            P G    +  P+
Sbjct: 386 PSGPGSAAAAAGLGGYGPAQQGPSGAGSAAAAAAAG------------PGGYGPVQQGPS 433

Query: 338 SPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496
            PG AA      G  G GPA  G   Y P S A  A + G  GY P   A A +S
Sbjct: 434 GPGSAA------GPGGYGPAQQGPARYGPGSAAAAAAAAGSAGYGPGPQASAAAS 482

[83][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
            RepID=B7PJA3_IXOSC
          Length = 1937

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
 Frame = +2

Query: 38   AMPESERGYTPGREGQRTPGRA--FDAAMTPTYAYSPARARTPGGTA---FSPAYTGPGG 202
            A P    G++PG     TPG A    +A +    YSPA A    G +    SPA +    
Sbjct: 1524 ATPSYGSGWSPGLGSGMTPGAAGFSPSAASDASGYSPASAGLSPGWSPQPGSPASSPASP 1583

Query: 203  FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            + P   + ++SP   S+ A   ++P  MTP        +P  SP SP Y+  SP +    
Sbjct: 1584 YIPSPVSPNYSP---SSPAYAPSSPS-MTPASPTYSPTSPSYSPTSPSYSPTSPNY---- 1635

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1636 ----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1670

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196
            A SPA P      +P              +MTP    YSP    +P  +  SP+Y  T P
Sbjct: 1577 ASSPASPYIPSPVSPNYSPSSPAYAPSSPSMTPASPTYSPT---SPSYSPTSPSYSPTSP 1633

Query: 197  GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
              +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP + 
Sbjct: 1634 N-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1691

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   +  + +Y+P SP+Y  TSP   YSP++P+ + SSP Y
Sbjct: 1692 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPSSPNY 1726

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     Y+PA   +P  +  SP+Y  T
Sbjct: 1688 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPSSPNYTPA---SPSYSPTSPSYSPT 1743

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S +           +PG       +P+ SP SP Y+  SP 
Sbjct: 1744 SPS-YSPTSPSYSPTSPSYSPSSPNYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSPS 1802

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        + G+  Y P+SP Y  TSP   YSP++P+ + SSP Y
Sbjct: 1803 Y--------SPGSPQYTPSSPKYSPTSP--TYSPTSPSYSPSSPKY 1838

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP        Y+PG     +P     +  +P+Y+     YSP   + TP    +SP  T 
Sbjct: 1765 SPNYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPGSPQYTPSSPKYSP--TS 1821

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP + + S  SP  S        T    TP        +P+ SP SP Y+  SP++
Sbjct: 1822 PT-YSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKY 1880

Query: 371  G------GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
                          +  +  Y+P SP Y  TSP G  YSP++P  + SSP Y
Sbjct: 1881 SPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSSYSPTSPGYSPSSPTY 1932

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            SP+   +   Y+PG   Q TP     +  +PTY+ + + + +P    +SP  T P  +SP
Sbjct: 1793 SPSYSPTSPSYSPGSP-QYTPSSPKYSPTSPTYSPT-SPSYSPSSPKYSP--TSPK-YSP 1847

Query: 212  INATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
             + T +  SP  S        T  + +P        +P+ SP SP Y+  SP++      
Sbjct: 1848 TSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKY------ 1901

Query: 389  GPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSP 499
              +  +  Y+P SP   +Y  TSPG  YSPS+P  + +SP
Sbjct: 1902 --SPTSPTYSPTSPKGSSYSPTSPG--YSPSSPTYSPTSP 1937

[84][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 45/137 (32%), Positives = 66/137 (48%)
 Frame = +2

Query: 95   GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
            G    +A TPT  +S   A +PG  A SP+Y+     SP     + SP  S +  A  AT
Sbjct: 1531 GDGSGSAYTPTSPFSSFGAASPGFAATSPSYSPS---SPGMGLGAASPSFSPSSPAFAAT 1587

Query: 275  PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454
                +P        +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP 
Sbjct: 1588 SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSP- 1638

Query: 455  MGYSPSTPALAVSSPGY 505
              YSP++P+ + +SP Y
Sbjct: 1639 -SYSPTSPSYSPTSPSY 1654

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGT 169
            AA+ +    SPA   +   Y+P          ++    +P+Y+     YSP    +P  +
Sbjct: 1572 AASPSFSPSSPAFAATSPSYSPSSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYS 1627

Query: 170  AFSPAY--TGPGGFSPINATASFSPIMSSADAAGRA-TPGRMTPGRSPAGRFTPRMSPAS 340
              SP+Y  T P  +SP   + S+SP   S      + +P   +P        +P  SP S
Sbjct: 1628 PTSPSYSPTSPS-YSP--TSPSYSPTSPSYSPTSPSYSPTSYSPTSPSYSPTSPSYSPTS 1684

Query: 341  PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P Y+  SP +        AG + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1685 PSYSPTSPSYSPSSPKFNAGASTSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1737

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 3/163 (1%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART-PGGTAFSPAY--TGP 196
            A SP    +   Y+P      +PG    AA       SPA A T P  +  SP+Y  T P
Sbjct: 1549 AASPGFAATSPSYSPS-----SPGMGLGAASPSFSPSSPAFAATSPSYSPSSPSYSPTSP 1603

Query: 197  GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
              +SP   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +  
Sbjct: 1604 S-YSP--TSPSYSPTSPSYSPTSPSY-SPTSPSYSPT---SPSYSPTSPSYSPTSPSYSP 1656

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 P+    +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1657 T---SPSYSPTSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1694

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 12/175 (6%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFD------AAMTPTYA-----YSPAR-A 151
            ++ A  A SP+   S   Y+P          ++       +  +P+Y+     YSP   +
Sbjct: 1580 SSPAFAATSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1639

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
             +P   ++SP        SP  +  S+SP   S            +P  SP    +P  S
Sbjct: 1640 YSPTSPSYSPTSPSYSPTSPSYSPTSYSPTSPSYSPT--------SPSYSPT---SPSYS 1688

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
            P SP Y+  SP+F  G     +  + +Y+P SP+Y  TSP   YSP++P+ +  S
Sbjct: 1689 PTSPSYSPSSPKFNAGASTSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPGS 1741

[85][TOP]
>UniRef100_Q99366 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99366_SOYBN
          Length = 625

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
 Frame = +2

Query: 62  YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220
           Y  G +   TP R+        +  M+P+Y  SP    +P   A    Y G   FSP  +
Sbjct: 308 YMDGLDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAFSP-TS 366

Query: 221 TASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394
           +  +SP          ++PG    +PG SP    +P  SP SPGY+  SP +      G 
Sbjct: 367 SPGYSP----------SSPGYSPSSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGY 412

Query: 395 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           +  + AY+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 413 SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 447

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193
           SP+   +   Y+P          A+     A +PT  AYSP    +P  +  SP+Y  T 
Sbjct: 437 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT---SPSYSPTSPSYSPTS 493

Query: 194 PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
           P  +SP + + S  SP  S    A   T    +P        +P  SP SP Y   S ++
Sbjct: 494 PS-YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKY 552

Query: 371 GGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              L   P+      +  Y+P SP Y  TSP   YSP++P+ + SSP Y
Sbjct: 553 SPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 599

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
           SP    S  GY+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 402 SPTYSPSSPGYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 457

Query: 191 GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
            P  +SP + A +  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 458 SPA-YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 516

Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPG-----------MGYSPSTPALAVSSP 499
           +      G +  + +Y+P SP+Y  TSP            + YSPS+P L+ SSP
Sbjct: 517 YSP-TSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSP 570

[86][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
            RepID=A8IRZ2_CHLRE
          Length = 1789

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 56/157 (35%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
 Frame = +2

Query: 65   TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA---SFS 235
            TP R   RTPG      M+P++  SP  +   G + FSP +  PG FSP +        S
Sbjct: 1496 TPSRSPARTPG-----PMSPSHLLSPMHSPFVG-SGFSPMH--PGAFSPAHGGGVGGPMS 1547

Query: 236  PIMSSADAAGRATPGRMTPGR------SPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGP 394
            P  S        T  R +P        SPA   T P  SP SP Y+  SP +        
Sbjct: 1548 PGYSPTSPGYSPTSPRYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-------- 1599

Query: 395  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  + AY+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1600 SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1634

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 42/95 (44%), Positives = 50/95 (52%), Gaps = 17/95 (17%)
 Frame = +2

Query: 272  TPGRMTPGRSPA---GRFTPR--------------MSPASPGYAAMSPRFGGGLGGGPAG 400
            TPGRMTP RSPA   G  +P                SP  PG  A SP  GGG+GG  + 
Sbjct: 1491 TPGRMTPSRSPARTPGPMSPSHLLSPMHSPFVGSGFSPMHPG--AFSPAHGGGVGGPMSP 1548

Query: 401  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            G   Y+P SP Y  TSP   YSP++PA + +SP Y
Sbjct: 1549 G---YSPTSPGYSPTSP--RYSPTSPAYSPTSPAY 1578

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
 Frame = +2

Query: 59   GYTPGREGQRTP--GRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTGPGGFSPI 214
            G++P   G  +P  G      M+P Y+     YSP   R +P   A+SP  T P  +SP 
Sbjct: 1525 GFSPMHPGAFSPAHGGGVGGPMSPGYSPTSPGYSPTSPRYSPTSPAYSP--TSPA-YSPT 1581

Query: 215  N-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 391
            + A +  SP  S    A   T    +P        +P  SP SP Y+  SP +       
Sbjct: 1582 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY------- 1634

Query: 392  PAGGAGAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGY 505
             +  + AY+P SPAY  TSP            YSP++P+++ +SP Y
Sbjct: 1635 -SPTSPAYSPTSPAYSPTSPAYSPAYSPTSPQYSPTSPSMSPTSPRY 1680

[87][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
          Length = 1748

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
 Frame = +2

Query: 44   PESERGYTPGRE-GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220
            P+ E  ++P R+ G  +PG   +   T  +           G  FSPA T P G+SP + 
Sbjct: 1522 PDPESNFSPIRQAGAESPGGFTEYQPTGGF-----------GGGFSPAATSPAGYSPSSP 1570

Query: 221  TAS--FSPIMSSADAAGRATPG---------RMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             ++   SP  S + +    +PG           +PG SPA   +P  +P SP Y+  SP 
Sbjct: 1571 FSANPTSPGYSPSSSYSPTSPGMAMTSPRFSMTSPGFSPA---SPSFAPTSPAYSPTSPA 1627

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +G      P     +Y+P SP +  TSP   YSP++P+ + +SP +
Sbjct: 1628 YGQASPTSP-----SYSPTSPGFSPTSP--NYSPTSPSFSPASPAF 1666

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 63/194 (32%), Positives = 81/194 (41%), Gaps = 36/194 (18%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SPA   S  GY+P       P        +P+ +YSP    +PG    SP +  T PG F
Sbjct: 1556 SPAAT-SPAGYSPSSPFSANPT---SPGYSPSSSYSPT---SPGMAMTSPRFSMTSPG-F 1607

Query: 206  SPINATASFSPIMSS----ADAAGRATP-----GRMTPGRSPAGR-----------FTPR 325
            SP  A+ SF+P   +    + A G+A+P        +PG SP               +P 
Sbjct: 1608 SP--ASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPA 1665

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG------YSPSTPALA 487
             SP SP Y+  SP  GG      A      +P SP Y  TSPG        YSP++P  A
Sbjct: 1666 FSPTSPSYSPTSPAIGGA-----ARHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFA 1720

Query: 488  VS--------SPGY 505
             S        SPGY
Sbjct: 1721 GSPTSPGGPTSPGY 1734

[88][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase n=1 Tax=Vitis
            vinifera RepID=UPI0001985649
          Length = 1848

 Score = 66.6 bits (161), Expect = 9e-10
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 21/169 (12%)
 Frame = +2

Query: 62   YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP----------GGTAFSPAYT 190
            Y  G +   TP R+        D  M+P Y  SP    +P          GG AFSP  T
Sbjct: 1481 YMEGLDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSP--T 1538

Query: 191  GPGGFSPINATASFSPIMSSADAAGRA--TPGRM--TPGRSPAGRFTPRMSPASPGYAAM 358
               G+SP +   S S    S  + G +  +PG    +PG SP    +P  SP+SPGY+  
Sbjct: 1539 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPT 1595

Query: 359  SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1596 SPAY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1634

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y     AYSP    +PG +  SP+Y  T
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 1728

Query: 191  GPGGFSPIN-----ATASFSPIMSSADAAGRATPGR----MTPGRSPAGRFTPRMSPASP 343
             P  +SP +     ++A +SP ++ + ++ R +P       +P  SP    +P  SP SP
Sbjct: 1729 SPS-YSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPT---SPSYSPTSP 1784

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
             Y+  SP +        +G +  Y+P+SP Y   SP  GYSPS P  + SS
Sbjct: 1785 SYSPASPTYSP-TSPYNSGVSPDYSPSSPQY---SPSAGYSPSAPGYSPSS 1831

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SPAY  T
Sbjct: 1610 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPVYSPT---SPSYSPTSPAYSPT 1665

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SPGY+  SP 
Sbjct: 1666 SPA-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1724

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATS----PGMGYSPSTPALAVSSP 499
            +        +  + +Y+P SP+Y  +S    P + YSPS+P L+ SSP
Sbjct: 1725 Y--------SPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSP 1764

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
 Frame = +2

Query: 113  AMTPTY-AYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPG 280
            A +PT  AYSP    +P  +  SP+Y  T P  +SP + + S  SP  S    A   T  
Sbjct: 1661 AYSPTSPAYSPT---SPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPTSP 1716

Query: 281  RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG----AGAYAPASPAYMATS 448
              +P        +P  SP SP Y   S ++   L   P+      +  Y+P SP Y  TS
Sbjct: 1717 GYSPTSPSYSPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTS 1776

Query: 449  PGMGYSPSTPALAVSSPGY 505
            P   YSP++P+ + +SP Y
Sbjct: 1777 PS--YSPTSPSYSPASPTY 1793

[89][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q5WMZ9_ORYSJ
          Length = 1741

 Score = 66.6 bits (161), Expect = 9e-10
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPAR-ARTPGGTAFSPAYTGPGGFS 208
            SP    +   Y P          +++   +P+Y+YSP   + +P   ++S + T P  +S
Sbjct: 1583 SPVYSPTSPVYNPTSSAYSPTSPSYNPT-SPSYSYSPTSPSYSPTSPSYSYSPTSPS-YS 1640

Query: 209  PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
            P + + ++SP   S            +P  SP    +P  SP SP Y+  SP +      
Sbjct: 1641 PTSPSYNYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSPSY------ 1683

Query: 389  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              +  + AY+P SPAY  TSP  GYSP++P+ + SSP Y
Sbjct: 1684 --SPTSSAYSPTSPAYSPTSP--GYSPTSPSYSPSSPSY 1718

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAMTP----TYAYSPARARTPGGTA--FSPAYTGPGGF 205
            P S  GY+P      TPG     + +P    +  YSPA   +   T+  + P        
Sbjct: 1496 PSSGGGYSPSPP-VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1554

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SPI +  S  PI S +      T    +P        +P  +P S  Y+  SP +     
Sbjct: 1555 SPIYSATS--PIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN---- 1608

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              P   + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1609 --PTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSY 1646

[90][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q0DKN9_ORYSJ
          Length = 1834

 Score = 66.6 bits (161), Expect = 9e-10
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPAR-ARTPGGTAFSPAYTGPGGFS 208
            SP    +   Y P          +++   +P+Y+YSP   + +P   ++S + T P  +S
Sbjct: 1636 SPVYSPTSPVYNPTSSAYSPTSPSYNPT-SPSYSYSPTSPSYSPTSPSYSYSPTSPS-YS 1693

Query: 209  PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
            P + + ++SP   S            +P  SP    +P  SP SP Y+  SP +      
Sbjct: 1694 PTSPSYNYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSPSY------ 1736

Query: 389  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              +  + AY+P SPAY  TSP  GYSP++P+ + SSP Y
Sbjct: 1737 --SPTSSAYSPTSPAYSPTSP--GYSPTSPSYSPSSPSY 1771

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAMTP----TYAYSPARARTPGGTA--FSPAYTGPGGF 205
            P S  GY+P      TPG     + +P    +  YSPA   +   T+  + P        
Sbjct: 1549 PSSGGGYSPSPP-VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1607

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SPI +  S  PI S +      T    +P        +P  +P S  Y+  SP +     
Sbjct: 1608 SPIYSATS--PIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN---- 1661

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              P   + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1662 --PTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSY 1699

[91][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NVN7_VITVI
          Length = 1010

 Score = 66.6 bits (161), Expect = 9e-10
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 21/169 (12%)
 Frame = +2

Query: 62   YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP----------GGTAFSPAYT 190
            Y  G +   TP R+        D  M+P Y  SP    +P          GG AFSP  T
Sbjct: 718  YMEGLDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSP--T 775

Query: 191  GPGGFSPINATASFSPIMSSADAAGRA--TPGRM--TPGRSPAGRFTPRMSPASPGYAAM 358
               G+SP +   S S    S  + G +  +PG    +PG SP    +P  SP+SPGY+  
Sbjct: 776  SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPT 832

Query: 359  SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 833  SPAY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 871

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP    +   Y+P   G      A+    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 812  SPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 867

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP+ S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 868  SPS-YSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 926

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SPAY  TSPG  YSP++P+ + +SP Y
Sbjct: 927  YSP-TSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSPSYSPTSPSY 969

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SPAY  T
Sbjct: 847  SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPVYSPT---SPSYSPTSPAYSPT 902

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SPGY+  SP 
Sbjct: 903  SPA-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 961

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATS----PGMGYSPSTPALAVSSP 499
            +        +  + +Y+P SP+Y  +S    P + YSPS+P L+ SSP
Sbjct: 962  Y--------SPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSP 1001

[92][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
            Pt-1C-BFP RepID=B2W4S0_PYRTR
          Length = 1742

 Score = 66.6 bits (161), Expect = 9e-10
 Identities = 53/169 (31%), Positives = 74/169 (43%), Gaps = 12/169 (7%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-------YSPARARTPGGTAFSPAYT 190
            SP    +  GY+P   G  +P  A   A +P Y        YSP   R    T+ S + T
Sbjct: 1574 SPGFSPTSPGYSPTSPGTASPRFA---ATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPT 1630

Query: 191  GPGGFSPIN-----ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
             P G+SP +      + ++SP  +S    G AT    +P        +P+ SP SP Y A
Sbjct: 1631 SPAGYSPTSPQYSPTSPNYSP--TSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQA 1688

Query: 356  MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
             S R        P      Y+P SP Y  TSP   +SP++P  + +SPG
Sbjct: 1689 TSDRRSPTSPTSPQ-----YSPTSPRYSPTSPAGSFSPTSPRYSPTSPG 1732

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229
            G++P  +G R+PG +    M+P +  SP    +PG +  SP Y  T PG  SP  A  S 
Sbjct: 1547 GFSP-YDGGRSPGGSGFTGMSPGFT-SPV---SPGFSPTSPGYSPTSPGTASPRFAATSP 1601

Query: 230  ------FSPIMS-SADAAGRATPGRMTPGRSPAG--RFTPRMSPASPGYAAMSPRFGGGL 382
                   SP  S ++   G  T    +P  SPAG    +P+ SP SP Y+  SP F GG 
Sbjct: 1602 GYMASPTSPHYSPTSPRYGSPTSPSYSP-TSPAGYSPTSPQYSPTSPNYSPTSPTFMGG- 1659

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
                   + AY+P SP Y  TSP   YSP++P    +S
Sbjct: 1660 -----ATSPAYSPTSPQYSPTSP--QYSPTSPQYQATS 1690

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
 Frame = +2

Query: 152  RTPGGTAF---SPAYTGP--GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRF 316
            R+PGG+ F   SP +T P   GFSP +   S +   +++      +PG M    SP    
Sbjct: 1555 RSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRFAATSPGYMASPTSPHYSP 1614

Query: 317  T-PRM-SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
            T PR  SP SP Y+  SP          +  +  Y+P SP +M  +    YSP++P  + 
Sbjct: 1615 TSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSP 1674

Query: 491  SSPGY 505
            +SP Y
Sbjct: 1675 TSPQY 1679

[93][TOP]
>UniRef100_Q692G1 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes
           RepID=Q692G1_NEPCL
          Length = 332

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 57/165 (34%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
 Frame = +2

Query: 8   AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
           +ASA  A +    +   GY PG++G   PG A  AA           A  PGG  + P  
Sbjct: 94  SASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAA----------AAGPGG--YGPGQ 141

Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
            GPGG++P     S     ++A AA RA PG    G  PA     +  P+ PG AA +  
Sbjct: 142 QGPGGYAPGQQGPSGPGSAAAAAAAARAGPG----GYGPA-----QQGPSGPGIAASAAS 192

Query: 368 FGGGLGGGPA-GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496
            G G G GPA  G   Y P S    +   G  GY P + A A +S
Sbjct: 193 AGPG-GYGPAQQGPAGYGPGSAVAASAGAGSAGYGPGSQASAAAS 236

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 51/160 (31%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
           GY PG++G   PG A  AA         A A  PGG  + P   GPGG+ P     S + 
Sbjct: 4   GYRPGQQGPSGPGSAAAAA---------AAAAGPGG--YGPGQQGPGGYGPGQQGPSGAG 52

Query: 239 IMSSADAA------------GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
             ++A AA            G+  PG   PG+   G + P  + A+   A    +  GG 
Sbjct: 53  SAAAAAAAGPGQQGLGGYGPGQQGPGGYGPGQQGPGGYGPGSASAAAAAAGPGQQGPGGY 112

Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
           G G  G +G    AS A  A  PG GY P        +PG
Sbjct: 113 GPGQQGPSGP-GSASAAAAAAGPG-GYGPGQQGPGGYAPG 150

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 55/176 (31%), Positives = 73/176 (41%), Gaps = 10/176 (5%)
 Frame = +2

Query: 5   AAASARIARSPAM----PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARART 157
           AAA+A  A  P       +   GY PG++G    G A  AA           Y P + + 
Sbjct: 18  AAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQ-QG 76

Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
           PGG  + P   GPGG+ P +A+A          AA  A PG+  PG    G    +  P+
Sbjct: 77  PGG--YGPGQQGPGGYGPGSASA----------AAAAAGPGQQGPGGYGPG----QQGPS 120

Query: 338 SPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            PG A+ +    G  G GP   G G YAP          G G + +  A A + PG
Sbjct: 121 GPGSASAAAAAAGPGGYGPGQQGPGGYAPGQQG----PSGPGSAAAAAAAARAGPG 172

[94][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
            RepID=B3RM26_TRIAD
          Length = 1784

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 22/176 (12%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAF---DAAMTPTYA---YSPARARTPGGTAFSPAYTGPGGF 205
            P  E  YTPG  G  TPG A      A  P+++   YSP  +  P  +  SP  + P   
Sbjct: 1504 PSYEGPYTPGMGGGMTPGAAGFSPSGASEPSFSPASYSPNWSPGPAASPGSPGPSSPYMQ 1563

Query: 206  SPINAT--ASFSPIMSSADA--------------AGRATPGRMTPGRSPAGRFTPRMSPA 337
            SP + T   +F  I+ + ++              +   T  R +P        +PR SP 
Sbjct: 1564 SPTDITFYVAFQSIILTVESKLLTDFSKYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPT 1623

Query: 338  SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            SP Y+  SPR+        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1624 SPSYSPTSPRY--------SPTSPSYSPTSPSYSPTSP--RYSPTSPSYSPTSPSY 1669

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 53/170 (31%), Positives = 74/170 (43%), Gaps = 25/170 (14%)
 Frame = +2

Query: 71   GREGQRTPGRAFDAAMT-PTYA--YSPARA--RTPGGTAFSPAYTGPGGFSPINATASFS 235
            G   Q TP   +D+++T P+Y   Y+P      TPG   FSP+      FSP    AS+S
Sbjct: 1489 GMSPQMTP---WDSSLTTPSYEGPYTPGMGGGMTPGAAGFSPSGASEPSFSP----ASYS 1541

Query: 236  PIMSSADAAGRATPGRMTPGRSPAGRFT--------------------PRMSPASPGYAA 355
            P  S   AA   +PG  +P        T                     + SP SP Y+ 
Sbjct: 1542 PNWSPGPAASPGSPGPSSPYMQSPTDITFYVAFQSIILTVESKLLTDFSKYSPTSPSYSP 1601

Query: 356  MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             SPR+        +  + +Y+P SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1602 TSPRY--------SPTSPSYSPTSPRYSPTSP--SYSPTSPRYSPTSPSY 1641

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   +   Y+P    + +P     +  +P+Y+     YSP   R +P   ++SP  T 
Sbjct: 1638 SPSYSPTSPSYSP-TSPRYSPTSPSYSPTSPSYSPTSPKYSPTSPRYSPTSPSYSP--TS 1694

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP + + S  SP  S    +   T  R +P        +PR SP SP Y+  SPR 
Sbjct: 1695 PS-YSPTSPSYSPTSPSYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSPR- 1752

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                          Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1753 --------------YSPTSPSYSPTSP--SYSPTSPSYSPTSPDY 1781

[95][TOP]
>UniRef100_UPI000051AA8E PREDICTED: similar to DNA-directed RNA polymerase II largest
           subunit (RPB1) n=1 Tax=Apis mellifera
           RepID=UPI000051AA8E
          Length = 452

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 54/153 (35%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
 Frame = +2

Query: 65  TPGREGQRTPGRAFDAAMTPTY---AYSPA--RARTPGGTAFSPA-YTGPGGFSPINATA 226
           TP    Q TP        TP Y   + SPA     TPGG  FSP+  +   G SP  A +
Sbjct: 48  TPSMSPQMTPWMG----ATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSP--AYS 101

Query: 227 SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
           ++SP   S  + G   P       SPAG  +P  SP SP Y   SP             +
Sbjct: 102 AYSPQPGSPGSPG---PSMSPYPMSPAGGASPSYSPTSPAYLPTSPSI--------TPSS 150

Query: 407 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             Y+P SP Y  TSP   YSP++P+ + +SP Y
Sbjct: 151 PNYSPTSPTYSPTSP--NYSPTSPSYSPTSPSY 181

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 52/174 (29%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPG--GTAFSPAYTGP-G 199
           S   P    G TPG       G +  + ++P Y AYSP +  +PG  G + SP    P G
Sbjct: 68  SSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSP-QPGSPGSPGPSMSPYPMSPAG 126

Query: 200 GFSPINATAS------------FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
           G SP  +  S             SP  S        T    +P        +P  SP SP
Sbjct: 127 GASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYSPTSPSYSPTSPSYSPTSP 186

Query: 344 GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            Y+  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 187 SYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 230

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
           SP+   +   Y+P    Q +P     +  +P Y+     YSP    +P     SP YT  
Sbjct: 290 SPSYSPTSPSYSPSSP-QYSPASPSYSPSSPKYSPTSPSYSPT---SPSFAGTSPQYTPA 345

Query: 197 GG-FSPINAT-----ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
              +SP + T      S+SP      A+G       +P  SP    +P  SP SP Y+  
Sbjct: 346 SPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPT---SPTYSPTSPQYSPS 402

Query: 359 SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-----GYSPSTPALAVSSPGY 505
           S ++        +  +  Y P SP+Y  TSP       GYSP++P  + +SP Y
Sbjct: 403 STKY--------SPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 448

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
           SP+   +   Y+P      TP     +  +P+Y+     YSPA   +P  +  SP Y   
Sbjct: 269 SPSYSPTSPSYSPSSPNY-TPASPSYSPTSPSYSPSSPQYSPA---SPSYSPSSPKY--- 321

Query: 197 GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
              SP   + S+SP  +S   AG +      P  +PA   +P  SP SP Y+  SP +  
Sbjct: 322 ---SP--TSPSYSP--TSPSFAGTS------PQYTPA---SPTYSPTSPTYSPTSPSYSP 365

Query: 377 GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 A G+  Y+P+SP Y  TSP   YSP++P  + SS  Y
Sbjct: 366 SSPQHTASGSTRYSPSSPNYSPTSP--TYSPTSPQYSPSSTKY 406

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
           SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 185 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 240

Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
            P  +SP + + S  SP  S    +   T    +P        +P  +PASP Y+  SP 
Sbjct: 241 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPTSPS 299

Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           +        +  + +Y+P+SP Y  TSP   YSP++P+ A +SP Y
Sbjct: 300 YSPS-SPQYSPASPSYSPSSPKYSPTSP--SYSPTSPSFAGTSPQY 342

[96][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5YGY9_SORBI
          Length = 1857

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 32/180 (17%)
 Frame = +2

Query: 62   YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP-----------GGTAFSPAY 187
            Y  G +   TP R+        +  M+P+Y  SP    +P           G  AFSP +
Sbjct: 1480 YVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSP-F 1538

Query: 188  TGPGGFSPINATAS--------------FSPIMSSADAAGRATPGRMTPGRSPAGRFTPR 325
              PGG+SP +   S               SP  S A  +   T    TPG       +P 
Sbjct: 1539 PSPGGYSPSSGGYSPSSPVFTPEKGYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPN 1598

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1599 YSPTSPTYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1648

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFSPA 184
            SP+   +   YTPG     +P     +  +PTY+     YSP        +P  +  SP+
Sbjct: 1575 SPSYSPTSPSYTPGSPTY-SPTSPNYSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1633

Query: 185  Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
            Y  T P  +SP + + S  SP+ S    A   T    +P        +P  SP SP Y+ 
Sbjct: 1634 YSPTSPS-YSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1692

Query: 356  MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             SP +        +  + +Y+P SP+Y  TSP   YSP++PA + +SPGY
Sbjct: 1693 TSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPGY 1732

[97][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
            RepID=Q7Q3C6_ANOGA
          Length = 1878

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 6/166 (3%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP-AYTGPGG 202
            A +P+M   ++  TPG  G    G              PA   TPGG +FSP A +   G
Sbjct: 1492 AATPSMTPWQQSATPGYGGWSPSG--------------PASGMTPGGPSFSPSAQSDASG 1537

Query: 203  FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
             SP    +S+SPI  S  + G +    M+P    +   +P  SP+SP YA  SP      
Sbjct: 1538 MSP----SSWSPIRGSPSSPGPS----MSPYPPSSPSMSPSYSPSSPNYAPNSP------ 1583

Query: 383  GGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505
                 G + +Y+P SP Y   SP        YSPS+P +  ++  Y
Sbjct: 1584 ----GGASPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSATQNY 1625

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
 Frame = +2

Query: 35   PAMPESERGYTPGREGQ--RTPGRAFDAAMTPTYAYSPARAR-TPGGTAFSPA----YTG 193
            P+ P     Y+P        +PG A  +    +  YSP   + +PG + +SP+    ++ 
Sbjct: 1562 PSSPSMSPSYSPSSPNYAPNSPGGASPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSA 1621

Query: 194  PGGFSPINATASFSPIMSSADAAGRATPGRM---------TPGRSPAGRF----TPRMSP 334
               +SP + + S    M    A+  A+PG           +P  SP+       +P  SP
Sbjct: 1622 TQNYSPTSPSYSPMSPMHPTSASNFASPGYSPTSPSYSPTSPSYSPSSPVFSPTSPSYSP 1681

Query: 335  ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +SP Y+  SP               +Y+P SP+Y  TSP   ++P TP+ + SSP Y
Sbjct: 1682 SSPSYSPTSP---------------SYSPTSPSYSPTSP--NFTPVTPSYSPSSPNY 1721

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA----YSPARAR----TPGGTAFSPAY 187
            SPA P     Y+P    + +P     +  +P+Y     Y+PA  +    +P  +  SP+Y
Sbjct: 1729 SPASPS----YSPSSP-KYSPTSPSYSPTSPSYIGSPHYTPASPQYGQASPNYSPTSPSY 1783

Query: 188  TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
            +     SP ++  S S   S   ++   TP   +P  S     +P+ SP SP Y + SP 
Sbjct: 1784 SPS---SPQHSPGSSSNHYSIGSSSYSQTPAPYSPNMSSYSPSSPKYSPTSPVYTSSSP- 1839

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
                           Y+P+SPAY  T    GYSPS+PA    SP
Sbjct: 1840 --------------TYSPSSPAYSPTP--QGYSPSSPASPTYSP 1867

[98][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
            RepID=UPI000186D846
          Length = 1885

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG--GTAFSPAYTGPGGFSPIN 217
            P +  G TPG       G +  + ++P Y+    +  +P   G + SP    PGG     
Sbjct: 1506 PHAGSGMTPGGPSFSPSGSSDASGLSPGYSPWSPQPGSPSSPGPSNSPYVPSPGG----- 1560

Query: 218  ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
                 SP  S +  A   T   MTP  S     +P  SP+SP Y+  SP +        +
Sbjct: 1561 ---GMSPSYSPSSPAFAPTSPSMTPTSSNYSPTSPSYSPSSPNYSPNSPSY--------S 1609

Query: 398  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1610 PTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1643

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
 Frame = +2

Query: 65   TPGREGQRTPGRAFDAAMTPTY--AYSP--ARARTPGGTAFSPAYTGPG-GFSPINATAS 229
            TP    Q TP   ++   TP Y  A+SP      TPGG +FSP+ +    G SP      
Sbjct: 1482 TPSMSPQMTP---WNQGETPAYVSAWSPHAGSGMTPGGPSFSPSGSSDASGLSP-----G 1533

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      +     P       SP G  +P  SP+SP +A  SP             + 
Sbjct: 1534 YSPWSPQPGSPSSPGPSNSPYVPSPGGGMSPSYSPSSPAFAPTSPSM--------TPTSS 1585

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             Y+P SP+Y  +SP   YSP++P+ + +SP Y
Sbjct: 1586 NYSPTSPSYSPSSP--NYSPNSPSYSPTSPSY 1615

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG 202
            + SP +P    G +P              +MTPT + YSP    +P  +  SP Y+ P  
Sbjct: 1550 SNSPYVPSPGGGMSPSYSPSSPAFAPTSPSMTPTSSNYSPT---SPSYSPSSPNYS-PNS 1605

Query: 203  FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
             S    + S+SP   S            +P  SP    +P  SP SP Y+  SP +    
Sbjct: 1606 PSYSPTSPSYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSPSY---- 1650

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1651 ----SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1685

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARART-PGGTAFSPAYTGPGGF 205
            SP+   +   Y+P          ++    +P+Y+  SP+ +RT P  +  SP+Y+ P   
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSRTSPSYSPTSPSYS-PSSP 1718

Query: 206  SPINATASFSPIMSSADAAGRATPGR------------MTPGRSPAG--------RFTP- 322
            +   A+ SFSP   S  ++ R +P               +P  SP          ++TP 
Sbjct: 1719 NYTPASPSFSPTSPSLYSSPRYSPASPSYSPGSPKYSPTSPSYSPTSPSYASVSPQYTPT 1778

Query: 323  --RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
              + SP SP Y+  SP +         G +  Y+P SP Y  TS  + YSP++P  + SS
Sbjct: 1779 SPQYSPTSPTYSPTSPSYSPSSPSHTPGASTRYSPTSPKYSPTS--LSYSPASPQYSPSS 1836

Query: 497  PGY 505
              Y
Sbjct: 1837 SKY 1839

[99][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E658E
          Length = 1628

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 59/159 (37%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
 Frame = +2

Query: 68   PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP------INATAS 229
            PG     + G  F +A +P    SPA   TP  T  +PAY   G +SP          A 
Sbjct: 1489 PGISVAGSTGMFFGSAPSPMSGMSPAM--TPWNTGATPAY---GAWSPSVGSGMTPGAAG 1543

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAGGA 406
            FSP  +S DA+G       +PG SPA   TP  SP SPG A+   P  GG +        
Sbjct: 1544 FSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPASPYIPSPGGAMSPN----- 1590

Query: 407  GAYAPASPAYMATSPG------MGYSPSTPALAVSSPGY 505
              Y+P SPAY   SPG       GYSP++P+ + +SP Y
Sbjct: 1591 --YSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSPTSPSY 1627

[100][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=B9FZ51_ORYSJ
          Length = 1526

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 55/178 (30%), Positives = 76/178 (42%), Gaps = 30/178 (16%)
 Frame = +2

Query: 62   YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTP----------GGTAFSPA-- 184
            Y  G +   TP R+        +  M+P+Y  SP    +P          GG AFSP   
Sbjct: 1152 YVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAFSPVPS 1211

Query: 185  --YT--GPGGFSPINATAS-------FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
              YT    GG+SP +   S        SP  S A  +   T    TPG       +P  S
Sbjct: 1212 PGYTPSSGGGYSPSSPVYSPGPGYSPTSPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYS 1271

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P SP Y+  SP +        +  + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1272 PTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPVYSPTSPAY 1326

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   YTPG         ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1246 SPSYSPTSPSYTPGSPTYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1301

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP+ S    A   T    +P        +P  SP SP Y+  SP 
Sbjct: 1302 SPS-YSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1360

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++PA + +SPGY
Sbjct: 1361 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPGY 1396

[101][TOP]
>UniRef100_A6YIY0 Major ampullate spidroin 2 n=1 Tax=Latrodectus hesperus
            RepID=A6YIY0_9ARAC
          Length = 3779

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 58/169 (34%), Positives = 69/169 (40%), Gaps = 4/169 (2%)
 Frame = +2

Query: 11   ASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYT 190
            + A  A + A      GY PG  G   PG A  AA     A + A    PGG    P+  
Sbjct: 2934 SGAAAAAAAAAGSGPSGYGPGAAGPSGPGGAGAAA-----AAASAGGSGPGGYGQGPSGY 2988

Query: 191  GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            GP G  P+     + P  S A AA  A  G   PGR     + P  S A+   AA  P +
Sbjct: 2989 GPTG--PVGQQG-YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGY 3043

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAVSSPGY 505
            GG  G GP GGAGA A  +          GY P    +  A A   PGY
Sbjct: 3044 GGQQGYGP-GGAGAAAAVAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 3091

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 57/171 (33%), Positives = 73/171 (42%), Gaps = 4/171 (2%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A  A   A P+ ++GY PG  G      A          Y P  A      A + A
Sbjct: 2512 AAAAAAAAAGGAGPDRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAA-AAA 2570

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
              GP G+ P  A A+     ++A AAG + PG    G+ P+G       P+ PG      
Sbjct: 2571 GPGPSGYGPGGAGAA-----AAAAAAGGSGPGGY--GQGPSG-----YGPSGPG------ 2612

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMATSPG--MGYSP--STPALAVSSPGY 505
               G  G GP GG+GA A A+ A     PG   GY P  +  A A   PGY
Sbjct: 2613 ---GQQGNGP-GGSGAAAAAAAAAGGAGPGRQQGYGPGGAAAAAAAGGPGY 2659

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 56/166 (33%), Positives = 68/166 (40%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A  A   A P  ++GY PG  G      A  AA      Y   +   PGG A + A
Sbjct: 1324 AAAAAAAAAGGAGPGRQQGYGPGSSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAA 1376

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
                GG  P     ++ P  S A AA  A  G   PGR     + P  S A+   AA  P
Sbjct: 1377 AAAAGGAGP-GTQQAYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 1433

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
             +GG  G GP GGAGA A A+           Y P     A +  G
Sbjct: 1434 GYGGQQGYGP-GGAGAAAAAAAGGAGAGRQQAYGPGGSGAAAAGSG 1478

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 56/166 (33%), Positives = 68/166 (40%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A  A   A P  ++GY PG  G      A  AA      Y   +   PGG A + A
Sbjct: 2102 AAAAAAAAAGGAGPGRQQGYGPGSSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAA 2154

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
                GG  P     ++ P  S A AA  A  G   PGR     + P  S A+   AA  P
Sbjct: 2155 AAAAGGAGP-GTQQAYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 2211

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
             +GG  G GP GGAGA A A+           Y P     A +  G
Sbjct: 2212 GYGGQQGYGP-GGAGAAAAAAAGGAGAGRQQAYGPGGSGAAAAGSG 2256

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 64/204 (31%), Positives = 83/204 (40%), Gaps = 38/204 (18%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRT----------------PGRAFDAAMTPTYAY 136
            AAA+A  A   A P  ++GY PG  G                   PG A  AA     + 
Sbjct: 445  AAAAAAAAAGGAGPGRQQGYGPGGSGAAAATAAGGPGYVGQQRYGPGGAGAAAAAAAGSA 504

Query: 137  SPARART--PGGT----AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT--- 289
             P+R +   PGG+    A + A +GP G+ P  A+       ++A A G A PGR     
Sbjct: 505  GPSRQQAYGPGGSGPAAATAAAGSGPSGYGP-GASGPVGADAAAAAATGSAGPGRQQAYG 563

Query: 290  PGRSPA----------GR---FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
            PG S A          GR   + P  S A+   AA  P +GG  G GP GGAGA A A+ 
Sbjct: 564  PGESGAAAAAASGAGPGRQLGYGPGGSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAA 622

Query: 431  AYMATSPGMGYSPSTPALAVSSPG 502
                      Y P     A ++ G
Sbjct: 623  GGAGPGRQQTYGPGGSGAAATAAG 646

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 54/163 (33%), Positives = 66/163 (40%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
            AA+A  A  P     ++GY PG  G      A  A      AY P  +   G  A + A 
Sbjct: 2367 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GAAAAAAAG 2422

Query: 188  TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
            TGP G+ P  A          A AA  A  G   PGR  A  + P  S A+   AA  P 
Sbjct: 2423 TGPSGYGPGAAGPG------GAGAAAAAAAGGAGPGRQQA--YGPGGSGAAAAAAAGGPG 2474

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
            +GG  G GP GGAGA A A+           Y P     A ++
Sbjct: 2475 YGGQQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 2516

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 54/166 (32%), Positives = 65/166 (39%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A  A  P       GY PG  G    G A  AA       S       G + + P+
Sbjct: 2696 AAAAAAAAAGPG----PSGYGPGASGPSGTGGAGAAAAAAAAGGSGPGGYGQGASGYGPS 2751

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
              GPGG         + P  S A AA  A  G   PGR     + P  S A+   AA  P
Sbjct: 2752 --GPGG------QQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 2801

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
             +GG  G GP GGAGA A A+           Y P     A ++ G
Sbjct: 2802 GYGGPQGYGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAAAG 2846

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 62/182 (34%), Positives = 74/182 (40%), Gaps = 17/182 (9%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
            AA+A  A  P     ++GY PG  G      A  A      AY P  +      A   A 
Sbjct: 1094 AAAAAAAVGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGSGATAAAAV--AG 1150

Query: 188  TGPGGFSPINATASFSPIMSSADAAGRATPGRMT---PGRSPA----------GR---FT 319
            +GP G+ P  A A+      +A AAG A PGR     PG S A          GR   + 
Sbjct: 1151 SGPSGYGPGGAGAA------AAAAAGGAGPGRQQAYGPGGSGAAAAAASGAGPGRQQVYG 1204

Query: 320  PRMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
            P  S A+   AA  P +GG  G GP G GA A A A  A   T    G   S  A A + 
Sbjct: 1205 PGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGSGAAAAAAG 1264

Query: 497  PG 502
            PG
Sbjct: 1265 PG 1266

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 64/183 (34%), Positives = 77/183 (42%), Gaps = 18/183 (9%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
            AA+A  A  P     ++GY PG  G      A  A      AY P  +   G TA + A 
Sbjct: 1872 AAAAAAAVGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GATAAAAAA 1927

Query: 188  -TGPGGFSPINATASFSPIMSSADAAGRATPGRMT---PGRSPA----------GR---F 316
             +GP G+ P  A A+      +A AAG A PGR     PG S A          GR   +
Sbjct: 1928 GSGPSGYGPGGAGAA------AAAAAGGAGPGRQQAYGPGGSGAAAAAASGAGPGRQQVY 1981

Query: 317  TPRMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMGYSPSTPALAVS 493
             P  S A+   AA  P +GG  G GP G GA A A A  A   T    G   S  A A +
Sbjct: 1982 GPVGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGSGAAAAAA 2041

Query: 494  SPG 502
             PG
Sbjct: 2042 GPG 2044

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 60/188 (31%), Positives = 71/188 (37%), Gaps = 22/188 (11%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
            AA+A  A  P     ++GY PG  G      A  A      AY P  +   G  A + A 
Sbjct: 1589 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GAAAAAAAG 1644

Query: 188  TGPGGFSPINATASFSPIMSSADAAGRATPGRMT---PGRSPAGRFTPRMSPASPGYAAM 358
            TGP G+ P  A        ++A AAG A PGR     PG S A        P   G    
Sbjct: 1645 TGPSGYGP-GAAGPGGAGAAAAAAAGSAGPGRQQAYGPGGSGAAAAAAAGGPGYGGQQGY 1703

Query: 359  SPRFGGGLGGGPAGGAG-----AYAP----ASPAYMATSPG------MGYSPSTP----A 481
             P   G      AGGAG     AY P    A+ A  A + G       GY P +     A
Sbjct: 1704 GPGGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAAAGGAGPDRQQGYGPGSSGAAAA 1763

Query: 482  LAVSSPGY 505
             A   PGY
Sbjct: 1764 AAAGGPGY 1771

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 52/164 (31%), Positives = 63/164 (38%), Gaps = 7/164 (4%)
 Frame = +2

Query: 35   PAMPESERGYTPGREGQRTPGRAFDAAMTP--TYAYSP-ARARTPGGTAFSPAYTGPGGF 205
            P  P  ++GY PG  G      A      P     Y P +        A  P Y G  G+
Sbjct: 2990 PTGPVGQQGYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGYGGQQGY 3049

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
             P  A A      ++A AAG A PGR          + P  S A+   AA  P +GG  G
Sbjct: 3050 GPGGAGA------AAAVAAGGAGPGRQQ-------GYGPGSSGAAAAAAAGGPGYGGQQG 3096

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAVSSPGY 505
             GP GGAGA A  +          GY P    +  A A   PGY
Sbjct: 3097 YGP-GGAGAAAAVAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 3139

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 51/167 (30%), Positives = 63/167 (37%), Gaps = 4/167 (2%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP----ARARTPGGTAF 175
            AA+A  A  P     ++GY PG  G      A  A       Y P    A A   GG+  
Sbjct: 592  AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQTYGPGGSGAAATAAGGSGP 650

Query: 176  SPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
                 GP G+ P             + AA  A  G   PGR     + PR S A+   AA
Sbjct: 651  GGYGQGPSGYGPSGPGGQQGYGPGGSGAAAAAAAGEAGPGRQQG--YGPRGSGAAAAAAA 708

Query: 356  MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
              P +GG  G GP GGAGA A A+           Y P     A ++
Sbjct: 709  GGPGYGGQSGYGP-GGAGAAAAAAAGGAGPGRQQEYGPGGSGAAAAA 754

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 52/160 (32%), Positives = 63/160 (39%), Gaps = 3/160 (1%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA---YTGP 196
            A + A      GY PG  G   PG A  AA       + A    PGG    P+    +GP
Sbjct: 2036 AAAAAAGPGPSGYGPGAAGPSGPGLAGAAAA------AAAGGSGPGGNGQRPSGYGQSGP 2089

Query: 197  GGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
            GG         + P  S A AA  A  G   PGR     + P  S A+   AA  P +GG
Sbjct: 2090 GG------QQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGG 2141

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
              G GP GGAGA A A+           Y P     A ++
Sbjct: 2142 QQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 2180

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 57/184 (30%), Positives = 74/184 (40%), Gaps = 18/184 (9%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGG-----T 169
            A A+A  A + A P  ++ Y PG  G      A   +    Y    A    PGG      
Sbjct: 972  AGAAAAAAAAGAGPGRQQEYGPGGTGAAAAAAAAAGSGPSGYGQGAAGPSGPGGEGTAAA 1031

Query: 170  AFSPAYTGPGGF--SPINATAS-------FSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
            A +   +GPGG+   P   +AS       + P  S   AA  A  G    GR     + P
Sbjct: 1032 AAAAGGSGPGGYGQGPSGYSASGPGGQQGYGPGGSGLAAAAAAAAGGAGTGRQQG--YGP 1089

Query: 323  RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAV 490
              S A+   AA+ P +GG  G GP GGAGA A A+           Y P    +T A AV
Sbjct: 1090 GGSGAAAAAAAVGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGATAAAAV 1148

Query: 491  SSPG 502
            +  G
Sbjct: 1149 AGSG 1152

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 62/189 (32%), Positives = 76/189 (40%), Gaps = 25/189 (13%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGT--- 169
            AAA+A     P+      GY PG  G   PG A  AA     +  P R +   PGG+   
Sbjct: 1637 AAAAAAAGTGPS------GYGPGAAG---PGGAGAAAAAAAGSAGPGRQQAYGPGGSGAA 1687

Query: 170  ----AFSPAYTGPGGFSPINATAS---------------FSPIMSSADAAGRATPGRMTP 292
                A  P Y G  G+ P  A A+               + P  S A AA  A  G   P
Sbjct: 1688 AAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAAAGGAGP 1747

Query: 293  GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG-MGYSP 469
             R     + P  S A+   AA  P +GG  G GP GGAGA   A+ A  A  PG  GY P
Sbjct: 1748 DRQQG--YGPGSSGAAAAAAAGGPGYGGQQGYGP-GGAGA---AAAAAAAAGPGPSGYGP 1801

Query: 470  STPALAVSS 496
                 A ++
Sbjct: 1802 GGAGAAAAA 1810

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 59/200 (29%), Positives = 76/200 (38%), Gaps = 34/200 (17%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP---------ARART 157
            AAA+A  A   A P+ ++GY PG  G      A          Y P         A A  
Sbjct: 1734 AAAAAAAAAGGAGPDRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAAAG 1793

Query: 158  PGGTAFSPAY------------TGPGGFS--PINATAS-------FSPIMSSADAAGRAT 274
            PG + + P              +GPGG+   P   +AS       + P  S   AA  A 
Sbjct: 1794 PGPSGYGPGGAGAAAAAAAAGGSGPGGYGQGPSGYSASGPGGQQGYGPGGSGLAAAAAAA 1853

Query: 275  PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454
             G    GR     + P  S A+   AA+ P +GG  G GP GGAGA A A+         
Sbjct: 1854 AGGAGTGRQQG--YGPGGSGAAAAAAAVGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGRQ 1910

Query: 455  MGYSP----STPALAVSSPG 502
              Y P    +T A A +  G
Sbjct: 1911 QAYGPGGSGATAAAAAAGSG 1930

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 58/181 (32%), Positives = 69/181 (38%), Gaps = 15/181 (8%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP---------ARARTP 160
            AA+A  A  P     ++GY PG  G      A  A      AY P         A A  P
Sbjct: 2648 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGAGAAAAAAAAAGP 2706

Query: 161  GGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340
            G + + P  +GP G     A A+       A AAG + PG    G S             
Sbjct: 2707 GPSGYGPGASGPSGTGGAGAAAA-------AAAAGGSGPGGYGQGAS------------- 2746

Query: 341  PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG--MGYSPSTP----ALAVSSPG 502
             GY    P  GG  G GP GG+GA A A+ A     PG   GY P +     A A   PG
Sbjct: 2747 -GYGPSGP--GGQQGYGP-GGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPG 2802

Query: 503  Y 505
            Y
Sbjct: 2803 Y 2803

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 59/202 (29%), Positives = 72/202 (35%), Gaps = 45/202 (22%)
 Frame = +2

Query: 35   PAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP-----ARARTPGGTAFSPAYTGPG 199
            P+ P  ++GY PG  G      A +A       Y P     A A   GG    P Y G  
Sbjct: 662  PSGPGGQQGYGPGGSGAAAAAAAGEAGPGRQQGYGPRGSGAAAAAAAGG----PGYGGQS 717

Query: 200  GFSPINATASFSPIMSSADAAGRATPGRM----------------TPGRSPAGRFTPRMS 331
            G+ P  A A+      +A AAG A PGR                   G  P+G       
Sbjct: 718  GYGPGGAGAA------AAAAAGGAGPGRQQEYGPGGSGAAAAAAAAAGSGPSGYGPGAAG 771

Query: 332  PASPGYAAMSPRFGGG---LGGGPAG---------------GAGAYAPASPAYMATSPG- 454
            P  PG A  +   G G    G GP+G               G+GA A A+ A     PG 
Sbjct: 772  PIGPGGAGAAAAGGSGPVGYGQGPSGYGASGTGGEQDYGPGGSGAAAAAAAAAGGAGPGR 831

Query: 455  -MGYSP----STPALAVSSPGY 505
              GY P    +  A A   PGY
Sbjct: 832  QQGYGPGGSGAAAAAAAGGPGY 853

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 55/172 (31%), Positives = 68/172 (39%), Gaps = 6/172 (3%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
            AA+A  A  P     ++GY PG  G      A  A      AY P  +    G A + A 
Sbjct: 1988 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGS----GAAAAAAG 2042

Query: 188  TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             GP G+ P  A  S   +  +A AA     G    G+ P+            GY    P 
Sbjct: 2043 PGPSGYGPGAAGPSGPGLAGAAAAAAAGGSGPGGNGQRPS------------GYGQSGP- 2089

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPG--MGYSP----STPALAVSSPGY 505
             GG  G GP GG+GA A A+ A     PG   GY P    +  A A   PGY
Sbjct: 2090 -GGQQGYGP-GGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 2139

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 55/185 (29%), Positives = 66/185 (35%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            A A+A +A   A P  ++GY PG  G      A          Y P  A      A   A
Sbjct: 3054 AGAAAAVAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAVAAGGA 3113

Query: 185  YTG------PGGFSPINATASFSPI--------MSSADAAGRATPGRMTPGRSPAGRFTP 322
              G      PG      A A+  P         +  A AA     G   PGR  A  + P
Sbjct: 3114 GPGRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGLGVAGAAAAVAAGGAGPGRQQA--YGP 3171

Query: 323  RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAV 490
              S A+   AA S R G G G    GGAGA A A+     +     Y P    +  A A 
Sbjct: 3172 GGSGAAAAAAAGSGRSGYGPGAAGTGGAGAAAAAAAGGAGSGRQQAYGPGGSGAAAASAA 3231

Query: 491  SSPGY 505
              PGY
Sbjct: 3232 GGPGY 3236

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 50/157 (31%), Positives = 60/157 (38%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
            A + A      GY PG  G   PG A  AA       + A    PGG    P+  G  G 
Sbjct: 1258 AAAAAAGPGPSGYGPGAAGPSGPGLAGAAAA------AAAGGSGPGGNGQRPSGYGQSG- 1310

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
                    + P  S A AA  A  G   PGR     + P  S A+   AA  P +GG  G
Sbjct: 1311 --TGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGQQG 1366

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
             GP GGAGA A A+           Y P     A ++
Sbjct: 1367 YGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 1402

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 56/165 (33%), Positives = 69/165 (41%), Gaps = 1/165 (0%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            A A+A  A   A P  ++ Y PG  G      A  AA      Y   +   PGG A + A
Sbjct: 2438 AGAAAAAAAGGAGPGRQQAYGPGGSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAA 2490

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
                GG  P     ++ P  S A AA  A  G   P R     + P  S A+   AA  P
Sbjct: 2491 AAAAGGAGP-GTQQAYGPGGSGAAAAAAAAAGGAGPDRQQG--YGPGSSGAAAAAAAGGP 2547

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496
             +GG  G GP GGAGA   A+ A  A  PG  GY P     A ++
Sbjct: 2548 GYGGQQGYGP-GGAGA---AAAAAAAAGPGPSGYGPGGAGAAAAA 2588

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 53/176 (30%), Positives = 66/176 (37%), Gaps = 10/176 (5%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            A A+A  A   A P  ++ Y PG  G      A   +    Y    A    PGG   + A
Sbjct: 724  AGAAAAAAAGGAGPGRQQEYGPGGSGAAAAAAAAAGSGPSGYGPGAAGPIGPGGAGAAAA 783

Query: 185  Y--------TGPGGF--SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
                      GP G+  S       + P  S A AA  A  G   PGR     + P  S 
Sbjct: 784  GGSGPVGYGQGPSGYGASGTGGEQDYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGGSG 841

Query: 335  ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            A+   AA  P +GG  G GP GGAGA A A+           Y P     A ++ G
Sbjct: 842  AAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGRQQPYGPGGAGAAAAAAG 896

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 62/180 (34%), Positives = 76/180 (42%), Gaps = 24/180 (13%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYT--------------PGREGQRT--PGRAFDAAMTPTYAY 136
            AAA+A  A   A P  ++GY               PG  GQ+   PG A  AA       
Sbjct: 3343 AAAAAAAAAGGAGPGRQQGYGQGSSGAAAAAAAGGPGYGGQQVYGPGGAGAAAAVAAGGA 3402

Query: 137  SPAR--ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAG 310
             P R  A  PGG+  + A +GP G+ P  A A+         AAG A PGR         
Sbjct: 3403 GPGRQQAYGPGGSG-AAAGSGPSGYGPGAAAAA---------AAGGAGPGRQQ------- 3445

Query: 311  RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG------MGYSPS 472
             + P  S A+   AA  P +GG  G GP GGAGA A A+     + PG       GY PS
Sbjct: 3446 AYGPGGSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAAG--GSGPGGYGQGPSGYGPS 3502

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 58/178 (32%), Positives = 66/178 (37%), Gaps = 15/178 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A  A  P       GY PG  G   P  A  AA     A + A    PGG    P+
Sbjct: 3273 AAAAAAAASGPG----PSGYEPGAAGPSGPAGAGAAA-----AAAAAGGSGPGGYGQGPS 3323

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
              GP G         + P  S A AA  A  G   PGR     +    S A+   AA  P
Sbjct: 3324 GYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGQGSSGAAAAAAAGGP 3378

Query: 365  RFGGGLGGGP----------AGGAG-----AYAPASPAYMATSPGMGYSPSTPALAVS 493
             +GG    GP          AGGAG     AY P      A S   GY P   A A +
Sbjct: 3379 GYGGQQVYGPGGAGAAAAVAAGGAGPGRQQAYGPGGSGAAAGSGPSGYGPGAAAAAAA 3436

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 59/178 (33%), Positives = 68/178 (38%), Gaps = 11/178 (6%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A  A   A P  ++GY PG  G                    A A   GG    P 
Sbjct: 816  AAAAAAAAAGGAGPGRQQGYGPGGSGA-------------------AAAAAAGG----PG 852

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP-GRSPAGRFTPRMSPASPG----- 346
            Y G  G+ P  A A+      +A AAG A PGR  P G   AG        + PG     
Sbjct: 853  YGGQQGYGPGGAGAA------AAAAAGGAGPGRQQPYGPGGAGAAAAAAGGSGPGGYGQG 906

Query: 347  ---YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP--STPALAVSSPGY 505
               Y A  P  GG  G GP GG+GA A A+          GY P  S  A A    GY
Sbjct: 907  PSGYGASGP--GGQQGFGP-GGSGAAAAAAAGGAGPGRQQGYGPGGSGAAAAAGGTGY 961

[102][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            elegans RepID=RPB1_CAEEL
          Length = 1852

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
 Frame = +2

Query: 104  FDAAMTPTYA---YSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
            +++ +TPTYA   +SP       G  FSPA    GG SP N    +SP  S  D  G  +
Sbjct: 1504 WNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNE-GGWSPA-SPGDPLGALS 1561

Query: 275  PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454
            P   + G    G +    SP+SP ++  SP                Y+P SP+Y  TSP 
Sbjct: 1562 PRTPSYGGMSPGVY----SPSSPQFSMTSPH---------------YSPTSPSYSPTSPA 1602

Query: 455  MGYSPSTPALAVSSPGY 505
             G SP +P+ + +SP Y
Sbjct: 1603 AGQSPVSPSYSPTSPSY 1619

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAA----MTPTYA-YSPARARTPGGTAFSPAYT 190
            A SP  P S  G +PG     +P  +  +      +P+Y+  SPA  ++P   ++SP  T
Sbjct: 1559 ALSPRTP-SYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSP--T 1615

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP+SP Y+  SPR
Sbjct: 1616 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPR 1674

Query: 368  FG------GGLGGGPAGGAGAYAPASPAYMATSP----GMGYSPSTPALAVSSPGY 505
            +              +  +  Y+P SP Y  TSP    G GYSPS+P  + SSP Y
Sbjct: 1675 YSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTY 1730

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAYTGPGGFS 208
            SP+   +   Y+P          ++    +PT  +YSP    +P  +  SP+Y+ P   S
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT---SPSYSPTSPSYS-PSSPS 1660

Query: 209  PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
               ++ S+SP  S   +    T    +P  SP    +P  SP SP Y+  SP +  G  G
Sbjct: 1661 YSPSSPSYSP-SSPRYSPTSPTYSPTSPTYSPT---SPTYSPTSPTYSPTSPSYESG--G 1714

Query: 389  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            G +  +  Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1715 GYSPSSPKYSPSSPTYSPTSP--SYSPTSPQYSPTSPQY 1751

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 39/197 (19%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAYTGP 196
            SP+   S   Y+P    + +P     +  +PTY+     YSP    +P  +  SP+Y   
Sbjct: 1658 SPSYSPSSPSYSPSSP-RYSPTSPTYSPTSPTYSPTSPTYSPT---SPTYSPTSPSYESG 1713

Query: 197  GGFSPIN-----ATASFSPIMSS---------------ADAAGRATPGRMTPG-RSPAGR 313
            GG+SP +     ++ ++SP   S               + ++   TP   T    SP G 
Sbjct: 1714 GGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGF 1773

Query: 314  FTPRMSPASPGYAAMSPRFGGG-------------LGGGPAGGAGAYAPASPAYMATSPG 454
             +P+ SP SP Y+  SP +                      G +  Y+P SP Y  +SP 
Sbjct: 1774 SSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSP- 1832

Query: 455  MGYSPSTPALAVSSPGY 505
              YSP++P+ + SSP Y
Sbjct: 1833 -TYSPASPSYSPSSPTY 1848

[103][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 18 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B27
          Length = 1831

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 6/151 (3%)
 Frame = +2

Query: 71   GREGQRTPGRAFDAAMTPTYA-YSPA-RARTPGG-TAFSPAY--TGPGGFSPINATAS-F 232
            GR G  TPG A   AM+P+Y+  SPA   R+PGG T  SP+Y  T P  +SP + + S  
Sbjct: 1494 GRSGM-TPGAA-GGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS-YSPTSPSYSPT 1550

Query: 233  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
            SP  S    +   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1551 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1602

Query: 413  YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1603 YSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1631

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFSPA 184
            SP+   +   Y+P          ++    +P+Y+     YSP+R      +P  +  SP+
Sbjct: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPSRPNYTPTSPSYSPTSPS 1686

Query: 185  Y--TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
            Y  T P  ++P++   S +P  S +      T  + +P        +P+ SP SP Y+  
Sbjct: 1687 YSPTSPN-YTPMSPNYSPTPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPT 1745

Query: 359  SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +P++        +  +  Y+P SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1746 TPKY--------SPTSPTYSPTSPVYTPTSP--KYSPTSPTYSPTSPKY 1784

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            SP+   +   Y+P R    TP     +  +P+Y  SP    +P  T  SP Y+    +SP
Sbjct: 1656 SPSYSPTSPNYSPSRPNY-TPTSPSYSPTSPSY--SPT---SPNYTPMSPNYSPTPSYSP 1709

Query: 212  INATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG----- 373
             +   +  SP  S        T  + +P        TP+ SP SP Y+  SP +      
Sbjct: 1710 SSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPK 1769

Query: 374  -GGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
                    +  +  Y+P SP Y  TSP G  YSP++P  + +SP Y
Sbjct: 1770 YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTY 1815

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 34/83 (40%), Positives = 45/83 (54%)
 Frame = +2

Query: 257  AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436
            AAGR+    MTPG +  G  +P  SP SP Y   SP       GG    + +Y+P SP+Y
Sbjct: 1492 AAGRSG---MTPGAA-GGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSY 1540

Query: 437  MATSPGMGYSPSTPALAVSSPGY 505
              TSP   YSP++P  + +SP Y
Sbjct: 1541 SPTSP--SYSPTSPNYSPTSPSY 1561

[104][TOP]
>UniRef100_Q9BIT7 Major ampullate spidroin 2-like protein (Fragment) n=1 Tax=Nephila
           inaurata madagascariensis RepID=Q9BIT7_9ARAC
          Length = 1953

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 56/171 (32%), Positives = 67/171 (39%), Gaps = 5/171 (2%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           AAA+A   R P       GY PG++G   PG A  AA +  Y       R PG  A    
Sbjct: 112 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGSEGYGPGQQGPRGPGAAA---- 161

Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
             GPGG+ P    AS +   ++    G   PG+  PG   A    P      PG    S 
Sbjct: 162 -AGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAAAGP--GGYGPGQQGPSA 218

Query: 365 RFGGGLGGGPAG-GAGAYAPASP--AYMATSPGMGYSPST--PALAVSSPG 502
                 G GP G G G   P  P  A  A  PG GY P    P  A ++ G
Sbjct: 219 AAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGPG-GYGPGQQGPGAAAAAAG 268

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 58/187 (31%), Positives = 73/187 (39%), Gaps = 21/187 (11%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A     P       GY PG++G    G A  AA      Y P + + PGG   + A
Sbjct: 1515 AAAAAAAGTGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 1567

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRMSP 334
              GPGG+ P       +   ++    G   PG+  P          GR P G    +  P
Sbjct: 1568 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGP 1627

Query: 335  ASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPST-------PA 481
              PG AA +    G  G GP     GG+GA A AS       PG GY P          A
Sbjct: 1628 GGPGAAAAAAAGRGPGGYGPGQQGPGGSGAAAAAS----GRGPG-GYGPGQQGPGGPGAA 1682

Query: 482  LAVSSPG 502
             A + PG
Sbjct: 1683 AAAAGPG 1689

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 51/171 (29%), Positives = 65/171 (38%), Gaps = 5/171 (2%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A   R P       GY PG++G    G A  AA      Y P + + PGG   + A
Sbjct: 511  AAAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 563

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
              GPGG+ P       +   ++   AG   PG+  PG   A           PG      
Sbjct: 564  AAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGA 623

Query: 365  RFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG-YSPSTP---ALAVSSPG 502
                  G GP G G G   P   +  A + G G Y P      A A +S G
Sbjct: 624  AAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAG 674

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 60/184 (32%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTA--- 172
           AAA+A +A S        GY P ++G   PG A  AA       Y P R + PG TA   
Sbjct: 38  AAAAAAVAPS--------GYGPSQQGPSGPGAATAAAAGRGPEGYGP-RQQGPGATAAAA 88

Query: 173 ----FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG-RSPAGRFTPRMSPA 337
               + P   GPGG+ P        P  ++A AAGR  PG   PG + P G      +  
Sbjct: 89  GPGGYGPRQQGPGGYGP----GQQGPGAAAAAAAGRG-PGGYGPGQQGPGGPGAAAAAAG 143

Query: 338 SPGY--AAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG------YSPSTPALAV 490
           S GY      PR  G    GP G G G    ++ A  A   G G        P  P+ A 
Sbjct: 144 SEGYGPGQQGPRGPGAAAAGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAA 203

Query: 491 SSPG 502
           + PG
Sbjct: 204 AGPG 207

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 57/182 (31%), Positives = 71/182 (39%), Gaps = 16/182 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARA----RTPGGT 169
            AAA+A   R P       GY PG++G   PG A  AA       Y P +     + PGG 
Sbjct: 1095 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGP 1148

Query: 170  AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
              + A  GPGG+ P       +   ++   AG   PG+  PG   A           PG 
Sbjct: 1149 GAAAAAAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQ 1208

Query: 350  ----AAMSPRFGGGLGG------GPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496
                AA +   G G GG      GP G + A A A P      PG  G   +  A A S 
Sbjct: 1209 QGPGAAAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPG--RYGPGQQGPGAAAAAAAGSG 1266

Query: 497  PG 502
            PG
Sbjct: 1267 PG 1268

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 48/160 (30%), Positives = 60/160 (37%), Gaps = 6/160 (3%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
            AA+A   R P       GY PG++G    G A  AA      Y P + + PGG   + A 
Sbjct: 1794 AAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAAA 1846

Query: 188  TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             GPGG+ P       +   ++   AG   PG+  PG   A           PG       
Sbjct: 1847 AGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA 1906

Query: 368  FGGGLGGGPAG-GAGAYAPASPAYMATS-----PGMGYSP 469
                 G GP G G G   P  P   A +     PG GY P
Sbjct: 1907 AAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPG-GYGP 1945

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 56/159 (35%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
 Frame = +2

Query: 8   AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTAFSPA 184
           AA+A   R P       GY PG++G   PG A  AA       Y P + + PGG   + A
Sbjct: 262 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 314

Query: 185 YTGPGGFSP----INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
             GPGG+ P            P  ++A AAGR  PG   PG+   G+  P  S A+   A
Sbjct: 315 AAGPGGYGPGGYGPGQQGPGGPGAAAAAAAGRG-PGGYGPGQQGPGQQGPGGSGAAAAAA 373

Query: 353 AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469
              P   GG G G  G  G  A A+    A  PG GY P
Sbjct: 374 GRGP---GGYGPGQQGPGGPGAAAA----AAGPG-GYGP 404

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A     P       GY PG++G   PG A  AA            + PGG   + A
Sbjct: 711  AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 764

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328
              GPGG+ P       +   ++    G   PG+  PGRS            P G    + 
Sbjct: 765  AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 824

Query: 329  SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499
             P  PG AA +   GG   G  GP   A A A   P  Y     G G S +  A A   P
Sbjct: 825  GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 884

Query: 500  G 502
            G
Sbjct: 885  G 885

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 50/162 (30%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
            GY PG++G  T   A  AA +    Y P + + PGG   + A  GPGG+ P       + 
Sbjct: 1159 GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 1215

Query: 239  IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
              ++    G   PG+  PG S A       GR+ P         AA +    GG G G  
Sbjct: 1216 AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAAAAGSGPGGYGPGQQ 1275

Query: 398  GGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
            G  G  A A+ A     PG GY P          A A + PG
Sbjct: 1276 GPGGPGAAAAAAAAGRGPG-GYGPGQQGPGGPGAAAAAAGPG 1316

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 55/182 (30%), Positives = 71/182 (39%), Gaps = 16/182 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
            AAA+A     P       GY PG++G   PG A  AA        Y P + + PGG   +
Sbjct: 1257 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1309

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP-----------GRSPAGRFTPR 325
             A  GPGG+ P       +   ++    G   PG+  P           GR P G    +
Sbjct: 1310 AAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQ 1369

Query: 326  MSPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSS 496
              P  PG AA +   GG   G  GP   A A A + P  Y     G G S +  A A + 
Sbjct: 1370 QGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAG 1429

Query: 497  PG 502
             G
Sbjct: 1430 RG 1431

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A     P       GY PG++G   PG A  AA            + PGG   + A
Sbjct: 1327 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 1380

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328
              GPGG+ P       +   ++    G   PG+  PGRS            P G    + 
Sbjct: 1381 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 1440

Query: 329  SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499
             P  PG AA +   GG   G  GP   A A A   P  Y     G G S +  A A   P
Sbjct: 1441 GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 1500

Query: 500  G 502
            G
Sbjct: 1501 G 1501

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 51/159 (32%), Positives = 61/159 (38%), Gaps = 7/159 (4%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGTAFS 178
            AAA+A   R P       GY PG++G    G A  AA      Y P +     PG  A +
Sbjct: 1466 AAAAASAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1519

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRAT----PGRMTPGRSPAGRFTPRMSPASPG 346
             A TGPGG+ P       S   ++A AAGR      PG+  PG   A           PG
Sbjct: 1520 AAGTGPGGYGPGQQGPGGSG--AAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPG 1577

Query: 347  YAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG 460
                        G GP G G G   P  P   A + G G
Sbjct: 1578 QQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRG 1616

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 52/162 (32%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
            GY PG++G  T   A  AA +    Y P + + PGG   + A  GPGG+ P       + 
Sbjct: 569  GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 625

Query: 239  IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
              ++    G   PG+  PG S A       GR+ P         AA + R  GG G G  
Sbjct: 626  AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAGRGPGGYGPGQQ 685

Query: 398  GGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502
            G  G  A A+    A  PG GY P       +  A A S PG
Sbjct: 686  GPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 722

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 58/189 (30%), Positives = 73/189 (38%), Gaps = 23/189 (12%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
            AAA+A     P       GY PG++G    G A  AA        Y P + + PGG   +
Sbjct: 1396 AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1448

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328
             A  GPGG+ P       +   S+    G   PG+  P          GR P G    + 
Sbjct: 1449 AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 1508

Query: 329  SPASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPST------- 475
             P  PG AA +    G  G GP     GG+GA A A+       PG GY P         
Sbjct: 1509 GPGGPGAAAAAAAGTGPGGYGPGQQGPGGSGAAAAAA----GRGPG-GYGPGQQGPGGPG 1563

Query: 476  PALAVSSPG 502
             A A + PG
Sbjct: 1564 AAAAAAGPG 1572

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 56/187 (29%), Positives = 65/187 (34%), Gaps = 21/187 (11%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP-------------- 142
            AAA+A     P       GY PG++G   PG A  AA      Y P              
Sbjct: 1583 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1636

Query: 143  ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
            A  R PGG  + P   GPGG     A +   P        G   PG       P G    
Sbjct: 1637 AAGRGPGG--YGPGQQGPGGSGAAAAASGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPG 1694

Query: 323  RMSPASPGYAAMSPRFGGGLG------GGPAGGAGAYAPASP-AYMATSPGMGYSPSTPA 481
            +  P +   AA + R  GG G      GGP   A A A   P  Y     G G S +  A
Sbjct: 1695 QQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGGSGAAAA 1754

Query: 482  LAVSSPG 502
             A   PG
Sbjct: 1755 AAGRGPG 1761

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 59/172 (34%), Positives = 73/172 (42%), Gaps = 6/172 (3%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREG--QRTPG---RAFDAAMTPTYAYSPARARTPGGT 169
            AAA+A   R P       GY PG++G  Q+ PG    A  AA      Y P + + PGG 
Sbjct: 899  AAAAAAAGRGPG------GYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGP 951

Query: 170  AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
              + A  GPGG+ P        P  ++A AAG + PG   PG         +  P  PG 
Sbjct: 952  GAAAAAAGPGGYGP----GQQGPGAAAAAAAG-SGPGGYGPG---------QQGPGGPGA 997

Query: 350  AAMSPRFG-GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            AA +   G GG G G  G  G  A A+ A     PG GY P         PG
Sbjct: 998  AAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQGPG 1047

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 57/186 (30%), Positives = 64/186 (34%), Gaps = 20/186 (10%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA---YSP----------- 142
           AAA+A   R P       GY PG++G   PG A  AA    Y    Y P           
Sbjct: 286 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGGYGPGQQGPGGPGAA 339

Query: 143 ---ARARTPGGTA---FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSP 304
              A  R PGG       P   GPGG     A A   P        G   PG       P
Sbjct: 340 AAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGP 399

Query: 305 AGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL 484
            G    +  P +   AA + R  GG G G  G  G  A A+ A     PG GY P     
Sbjct: 400 GGYGPGQQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGP 457

Query: 485 AVSSPG 502
               PG
Sbjct: 458 GQQGPG 463

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 55/183 (30%), Positives = 62/183 (33%), Gaps = 17/183 (9%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP-------------- 142
            AAA+A     P       GY PG++G   PG A  AA      Y P              
Sbjct: 972  AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1025

Query: 143  ARARTPGGTA---FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGR 313
            A  R PGG       P   GPGG     A A   P        G   PG       P G 
Sbjct: 1026 AAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGY 1085

Query: 314  FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS 493
               +  P +   AA + R  GG G G  G  G  A A+ A     PG GY P        
Sbjct: 1086 GPGQQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQ 1143

Query: 494  SPG 502
             PG
Sbjct: 1144 GPG 1146

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 55/176 (31%), Positives = 64/176 (36%), Gaps = 10/176 (5%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA---F 175
           AAA+A   R P       GY PG++G   PG A  AA            R PGG      
Sbjct: 412 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGGYGPGQQ 455

Query: 176 SPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
            P   GPGG     A A   P        G   PG       P G    +  P +   AA
Sbjct: 456 GPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAA 515

Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
            + R  GG G G  G  G+ A A+ A     PG GY P          A A + PG
Sbjct: 516 AAGRGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 568

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 61/200 (30%), Positives = 72/200 (36%), Gaps = 35/200 (17%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY----------AYSPARART 157
            AA+A   R P       GY PG++G   PG A  AA    Y          A + A  R 
Sbjct: 467  AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAAGRG 520

Query: 158  PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
            PGG  + P   GPGG     A A   P        G   PG       P G + P     
Sbjct: 521  PGG--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGT 577

Query: 338  SPGYAAMSPRFGGGLG------GGP-----AGGAGAYAP-------ASPAYMATSPGMGY 463
                AA +    GG G      GGP     A G G Y P       A+ A   + PG GY
Sbjct: 578  GAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPG-GY 636

Query: 464  SP-------STPALAVSSPG 502
             P       S+ A A + PG
Sbjct: 637  GPGQQGPGGSSAAAAAAGPG 656

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 53/187 (28%), Positives = 68/187 (36%), Gaps = 21/187 (11%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
            AAA+A     P       GY PG++G    G A  AA        Y P + + PGG   +
Sbjct: 780  AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 832

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328
             A  GPGG+ P       +   S+    G   PG+  P          GR P G    + 
Sbjct: 833  AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 892

Query: 329  SPASPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPGMG--------YSPSTPA 481
             P  PG AA +    G  G GP   G G   P      A + G G          P  P 
Sbjct: 893  GPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPG 952

Query: 482  LAVSSPG 502
             A ++ G
Sbjct: 953  AAAAAAG 959

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 57/180 (31%), Positives = 66/180 (36%), Gaps = 15/180 (8%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--------AYSPARARTPG 163
            AA+A   R P       GY PG++G   PG A  AA    Y        A + A  R PG
Sbjct: 1751 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAGRGPG 1804

Query: 164  GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
            G  + P   GPGG     A A   P        G   PG       P G + P       
Sbjct: 1805 G--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGTGA 1861

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502
              AA +    GG G G  G  G  A A+    A  PG GY P       +  A A S PG
Sbjct: 1862 AAAAAAGSGAGGYGPGQQGPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 1916

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 55/173 (31%), Positives = 65/173 (37%), Gaps = 7/173 (4%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A   R P       GY PG++G   PG A  AA            R PGG  + P 
Sbjct: 1701 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGG--YGPG 1742

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
              GPGG     A A   P        G   PG       P G    +  P +   AA + 
Sbjct: 1743 QQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA--AAAAG 1800

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
            R  GG G G  G  G+ A A+ A     PG GY P          A A + PG
Sbjct: 1801 RGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 1850

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 53/156 (33%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFS 235
            GY PG++G   PG A  AA  +    Y P + + PGG++ + A  GPG + P        
Sbjct: 1203 GYGPGQQG---PGAAAAAAAGSGPGGYGPGQ-QGPGGSSAAAAAAGPGRYGP----GQQG 1254

Query: 236  PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------GPA 397
            P  ++A AAG + PG   PG         +  P  PG AA +   G G GG      GP 
Sbjct: 1255 PGAAAAAAAG-SGPGGYGPG---------QQGPGGPGAAAAAAAAGRGPGGYGPGQQGPG 1304

Query: 398  GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
            G   A A A P      PG  G   +  A A S PG
Sbjct: 1305 GPGAAAAAAGPG--GYGPGQQGPGAAAAAAAGSGPG 1338

[105][TOP]
>UniRef100_Q692F9 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes
           RepID=Q692F9_NEPCL
          Length = 313

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 54/167 (32%), Positives = 70/167 (41%), Gaps = 1/167 (0%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           AAA+A  A  P   +   GY PG++G   PG       +P+    P  A      A  P 
Sbjct: 35  AAAAAAAASGPGQ-QGPGGYGPGQQG---PGGYGPGQQSPS---GPGSAAAAAAAAAGPG 87

Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMS 361
             GPGG+ P     S  P  +SA AA  A PG   PG+   G + P +  P+ PG AA +
Sbjct: 88  QQGPGGYGPGQQGPS-GPGSASA-AAAAAGPGGYGPGQQGPGGYAPGQQGPSGPGSAAAA 145

Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
                G GG      G   P   A  A++   GY P+    A   PG
Sbjct: 146 AAARAGPGGYGPAQQGPSGPGIAASAASAGPGGYGPAQQGPAGYGPG 192

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 44/128 (34%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
 Frame = +2

Query: 158 PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------RSPAGRFT 319
           PGG  + P   GPGG+ P     S  P  ++A AA  + PG+  PG      + P G   
Sbjct: 9   PGG--YGPGQQGPGGYGPGQQGPS-GPGSAAAAAAAASGPGQQGPGGYGPGQQGPGGYGP 65

Query: 320 PRMSPASPGYAAMSPRFGGGLG-GGPAG-GAGAYAPASP-----AYMATSPGMGYSPSTP 478
            + SP+ PG AA +     G G  GP G G G   P+ P     A  A  PG GY P   
Sbjct: 66  GQQSPSGPGSAAAAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAGPG-GYGPGQQ 124

Query: 479 ALAVSSPG 502
                +PG
Sbjct: 125 GPGGYAPG 132

[106][TOP]
>UniRef100_Q2VLH2 Major ampullate spidroin 2-like (Fragment) n=1 Tax=Nephila inaurata
           madagascariensis RepID=Q2VLH2_9ARAC
          Length = 2069

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 56/171 (32%), Positives = 67/171 (39%), Gaps = 5/171 (2%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           AAA+A   R P       GY PG++G   PG A  AA +  Y       R PG  A    
Sbjct: 279 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGSEGYGPGQQGPRGPGAAA---- 328

Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
             GPGG+ P    AS +   ++    G   PG+  PG   A    P      PG    S 
Sbjct: 329 -AGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAAAGP--GGYGPGQQGPSA 385

Query: 365 RFGGGLGGGPAG-GAGAYAPASP--AYMATSPGMGYSPST--PALAVSSPG 502
                 G GP G G G   P  P  A  A  PG GY P    P  A ++ G
Sbjct: 386 AAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGPG-GYGPGQQGPGAAAAAAG 435

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 53/169 (31%), Positives = 67/169 (39%), Gaps = 14/169 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A     P       GY PG++G    G A  AA      Y P + + PGG   + A
Sbjct: 1648 AAAAAAAGTGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 1700

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRMSP 334
              GPGG+ P       +   ++    G   PG+  P          GR P G    +  P
Sbjct: 1701 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRGPGGYGPGQQGP 1760

Query: 335  ASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSP 469
              PG AA +    G  G GP     GG+GA A AS      S   GY P
Sbjct: 1761 GGPGAAAAAAAGRGPGGYGPGQQGPGGSGAAAAASGRGPGGSGPGGYGP 1809

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 51/171 (29%), Positives = 65/171 (38%), Gaps = 5/171 (2%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A   R P       GY PG++G    G A  AA      Y P + + PGG   + A
Sbjct: 661  AAAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAA 713

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
              GPGG+ P       +   ++   AG   PG+  PG   A           PG      
Sbjct: 714  AAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGA 773

Query: 365  RFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG-YSPSTP---ALAVSSPG 502
                  G GP G G G   P   +  A + G G Y P      A A +S G
Sbjct: 774  AAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAG 824

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 60/184 (32%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTA--- 172
           AAA+A +A S        GY P ++G   PG A  AA       Y P R + PG TA   
Sbjct: 205 AAAAAAVAPS--------GYGPSQQGPSGPGAATAAAAGRGPEGYGP-RQQGPGATAAAA 255

Query: 173 ----FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG-RSPAGRFTPRMSPA 337
               + P   GPGG+ P        P  ++A AAGR  PG   PG + P G      +  
Sbjct: 256 GPGGYGPRQQGPGGYGP----GQQGPGAAAAAAAGRG-PGGYGPGQQGPGGPGAAAAAAG 310

Query: 338 SPGY--AAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG------YSPSTPALAV 490
           S GY      PR  G    GP G G G    ++ A  A   G G        P  P+ A 
Sbjct: 311 SEGYGPGQQGPRGPGAAAAGPGGYGPGQQGASAAASAAAGRGPGGYGPGQQGPGGPSAAA 370

Query: 491 SSPG 502
           + PG
Sbjct: 371 AGPG 374

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 57/182 (31%), Positives = 71/182 (39%), Gaps = 16/182 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAM-TPTYAYSPARA----RTPGGT 169
            AAA+A   R P       GY PG++G   PG A  AA       Y P +     + PGG 
Sbjct: 1228 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGP 1281

Query: 170  AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
              + A  GPGG+ P       +   ++   AG   PG+  PG   A           PG 
Sbjct: 1282 GAAAAAAGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQ 1341

Query: 350  ----AAMSPRFGGGLGG------GPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSS 496
                AA +   G G GG      GP G + A A A P      PG  G   +  A A S 
Sbjct: 1342 QGPGAAAAAAAGSGPGGYGPGQQGPGGSSAAAAAAGPG--RYGPGQQGPGAAAAAAAGSG 1399

Query: 497  PG 502
            PG
Sbjct: 1400 PG 1401

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 48/160 (30%), Positives = 60/160 (37%), Gaps = 6/160 (3%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
            AA+A   R P       GY PG++G    G A  AA      Y P + + PGG   + A 
Sbjct: 1910 AAAAAAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQ-QGPGGPGAAAAA 1962

Query: 188  TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             GPGG+ P       +   ++   AG   PG+  PG   A           PG       
Sbjct: 1963 AGPGGYGPGQQGTGAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA 2022

Query: 368  FGGGLGGGPAG-GAGAYAPASPAYMATS-----PGMGYSP 469
                 G GP G G G   P  P   A +     PG GY P
Sbjct: 2023 AAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPG-GYGP 2061

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A     P       GY PG++G   PG A  AA            + PGG   + A
Sbjct: 861  AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 914

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328
              GPGG+ P       +   ++    G   PG+  PGRS            P G    + 
Sbjct: 915  AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 974

Query: 329  SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499
             P  PG AA +   GG   G  GP   A A A   P  Y     G G S +  A A   P
Sbjct: 975  GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 1034

Query: 500  G 502
            G
Sbjct: 1035 G 1035

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 50/162 (30%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
            GY PG++G  T   A  AA +    Y P + + PGG   + A  GPGG+ P       + 
Sbjct: 1292 GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 1348

Query: 239  IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
              ++    G   PG+  PG S A       GR+ P         AA +    GG G G  
Sbjct: 1349 AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAAAAGSGPGGYGPGQQ 1408

Query: 398  GGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
            G  G  A A+ A     PG GY P          A A + PG
Sbjct: 1409 GPGGPGAAAAAAAAGRGPG-GYGPGQQGPGGPGAAAAAAGPG 1449

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 55/182 (30%), Positives = 71/182 (39%), Gaps = 16/182 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
            AAA+A     P       GY PG++G   PG A  AA        Y P + + PGG   +
Sbjct: 1390 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1442

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP-----------GRSPAGRFTPR 325
             A  GPGG+ P       +   ++    G   PG+  P           GR P G    +
Sbjct: 1443 AAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQ 1502

Query: 326  MSPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSS 496
              P  PG AA +   GG   G  GP   A A A + P  Y     G G S +  A A + 
Sbjct: 1503 QGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAG 1562

Query: 497  PG 502
             G
Sbjct: 1563 RG 1564

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 55/181 (30%), Positives = 68/181 (37%), Gaps = 15/181 (8%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A     P       GY PG++G   PG A  AA            + PGG   + A
Sbjct: 1460 AAAAAAAGSGPG------GYGPGQQGPGGPGAAAAAAAGRGPGGYGQGQQGPGGPGAAAA 1513

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRS------------PAGRFTPRM 328
              GPGG+ P       +   ++    G   PG+  PGRS            P G    + 
Sbjct: 1514 AAGPGGYGPGQQGPGAAAAAAAGSGPGGYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQQ 1573

Query: 329  SPASPGYAAMSPRFGGGLGG--GPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP 499
             P  PG AA +   GG   G  GP   A A A   P  Y     G G S +  A A   P
Sbjct: 1574 GPGGPGAAAAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGP 1633

Query: 500  G 502
            G
Sbjct: 1634 G 1634

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 51/159 (32%), Positives = 61/159 (38%), Gaps = 7/159 (4%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGTAFS 178
            AAA+A   R P       GY PG++G    G A  AA      Y P +     PG  A +
Sbjct: 1599 AAAAASAGRGPG------GYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAA 1652

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRAT----PGRMTPGRSPAGRFTPRMSPASPG 346
             A TGPGG+ P       S   ++A AAGR      PG+  PG   A           PG
Sbjct: 1653 AAGTGPGGYGPGQQGPGGSG--AAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPG 1710

Query: 347  YAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATSPGMG 460
                        G GP G G G   P  P   A + G G
Sbjct: 1711 QQGPGAAAAAAAGSGPGGYGPGQQGPGGPGAAAAAAGRG 1749

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 52/162 (32%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
            GY PG++G  T   A  AA +    Y P + + PGG   + A  GPGG+ P       + 
Sbjct: 719  GYGPGQQG--TGAAAAAAAGSGAGGYGPGQ-QGPGGPGAAAAAAGPGGYGPGQQGPGAAA 775

Query: 239  IMSSADAAGRATPGRMTPGRSPA-------GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
              ++    G   PG+  PG S A       GR+ P         AA + R  GG G G  
Sbjct: 776  AAAAGSGPGGYGPGQQGPGGSSAAAAAAGPGRYGPGQQGPGAAAAASAGRGPGGYGPGQQ 835

Query: 398  GGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502
            G  G  A A+    A  PG GY P       +  A A S PG
Sbjct: 836  GPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 872

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 57/186 (30%), Positives = 65/186 (34%), Gaps = 20/186 (10%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA---YSP----------- 142
           AAA+A  A + A      GY PG++G   PG A  AA    Y    Y P           
Sbjct: 430 AAAAAGQAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGGYGPGQQGPGGPGAA 489

Query: 143 ---ARARTPGGTA---FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSP 304
              A  R PGG       P   GPGG     A A   P        G   PG       P
Sbjct: 490 AAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGP 549

Query: 305 AGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL 484
            G    +  P +   AA + R  GG G G  G  G  A A+ A     PG GY P     
Sbjct: 550 GGYGPGQQGPGAAAAAAAAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGP 607

Query: 485 AVSSPG 502
               PG
Sbjct: 608 GQQGPG 613

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 57/182 (31%), Positives = 70/182 (38%), Gaps = 16/182 (8%)
 Frame = +2

Query: 5   AAASARIARSP--------------AMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP 142
           AAASA   R P              A      GY PG++G      A  AA +    Y P
Sbjct: 343 AAASAAAGRGPGGYGPGQQGPGGPSAAAAGPGGYGPGQQGPSAAAAA--AAGSGPGGYGP 400

Query: 143 ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
            + + PGG   + A  GPGG+ P           ++A AAG+A       GR P G    
Sbjct: 401 GQ-QGPGGPGAAAAAAGPGGYGPGQQGPG-----AAAAAAGQAAAA--AAGRGPGGYGPG 452

Query: 323 RMSPASPGYAAMSPRFGG-GLGGGPAGGAGAYAPASPAYMATSPGM-GYSPSTPALAVSS 496
           +  P  PG AA +   GG G GG   G  G   P + A  A   G  GY P         
Sbjct: 453 QQGPGGPGAAAAAAGPGGYGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGPGQQGPGQQG 512

Query: 497 PG 502
           PG
Sbjct: 513 PG 514

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 58/189 (30%), Positives = 73/189 (38%), Gaps = 23/189 (12%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
            AAA+A     P       GY PG++G    G A  AA        Y P + + PGG   +
Sbjct: 1529 AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 1581

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328
             A  GPGG+ P       +   S+    G   PG+  P          GR P G    + 
Sbjct: 1582 AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 1641

Query: 329  SPASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPST------- 475
             P  PG AA +    G  G GP     GG+GA A A+       PG GY P         
Sbjct: 1642 GPGGPGAAAAAAAGTGPGGYGPGQQGPGGSGAAAAAA----GRGPG-GYGPGQQGPGGPG 1696

Query: 476  PALAVSSPG 502
             A A + PG
Sbjct: 1697 AAAAAAGPG 1705

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 59/173 (34%), Positives = 74/173 (42%), Gaps = 19/173 (10%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
            AA+A   R P       GY PG++G   PG A  AA      Y P + + PG  A + A 
Sbjct: 1673 AAAAAAGRGPG------GYGPGQQGPGGPGAA--AAAAGPGGYGPGQ-QGPGAAAAAAAG 1723

Query: 188  TGPGGFSPINATASFSPIMSSADAAGRAT----PGRMTP-----------GRSPAGRFTP 322
            +GPGG+ P        P  ++A AAGR      PG+  P           GR P G    
Sbjct: 1724 SGPGGYGP-GQQGPGGPGAAAA-AAGRGPGGYGPGQQGPGGPGAAAAAAAGRGPGGYGPG 1781

Query: 323  RMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPAYMATS---PGMGYSP 469
            +  P   G AA +   G G G GP G G G   P + A  A +   PG GY P
Sbjct: 1782 QQGPGGSGAAAAASGRGPG-GSGPGGYGPGQQGPGAAAAAAAAGRGPG-GYGP 1832

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 55/176 (31%), Positives = 64/176 (36%), Gaps = 10/176 (5%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA---F 175
            AAA+A   R P       GY PG++G   PG A  AA            R PGG      
Sbjct: 562  AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGGYGPGQQ 605

Query: 176  SPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
             P   GPGG     A A   P        G   PG       P G    +  P +   AA
Sbjct: 606  GPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAA 665

Query: 356  MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
             + R  GG G G  G  G+ A A+ A     PG GY P          A A + PG
Sbjct: 666  AAGRGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 718

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 61/200 (30%), Positives = 72/200 (36%), Gaps = 35/200 (17%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY----------AYSPARART 157
            AA+A   R P       GY PG++G   PG A  AA    Y          A + A  R 
Sbjct: 617  AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAAGRG 670

Query: 158  PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
            PGG  + P   GPGG     A A   P        G   PG       P G + P     
Sbjct: 671  PGG--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGT 727

Query: 338  SPGYAAMSPRFGGGLG------GGP-----AGGAGAYAP-------ASPAYMATSPGMGY 463
                AA +    GG G      GGP     A G G Y P       A+ A   + PG GY
Sbjct: 728  GAAAAAAAGSGAGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAAGSGPG-GY 786

Query: 464  SP-------STPALAVSSPG 502
             P       S+ A A + PG
Sbjct: 787  GPGQQGPGGSSAAAAAAGPG 806

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 53/187 (28%), Positives = 68/187 (36%), Gaps = 21/187 (11%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--AYSPARARTPGGTAFS 178
            AAA+A     P       GY PG++G    G A  AA        Y P + + PGG   +
Sbjct: 930  AAAAAAAGSGPG------GYGPGQQGPGRSGAAAAAAAAGRGPGGYGPGQ-QGPGGPGAA 982

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP----------GRSPAGRFTPRM 328
             A  GPGG+ P       +   S+    G   PG+  P          GR P G    + 
Sbjct: 983  AAAAGPGGYGPGQQGPGAAAAASAGRGPGGYGPGQQGPGGSGAAAAAAGRGPGGYGPGQQ 1042

Query: 329  SPASPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPGMG--------YSPSTPA 481
             P  PG AA +    G  G GP   G G   P      A + G G          P  P 
Sbjct: 1043 GPGGPGAAAAAAAGRGPGGYGPGQQGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPG 1102

Query: 482  LAVSSPG 502
             A ++ G
Sbjct: 1103 AAAAAAG 1109

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 52/168 (30%), Positives = 59/168 (35%), Gaps = 3/168 (1%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA---FS 178
            AA+A   R P       GY PG++G   PG A  AA            R PGG       
Sbjct: 1130 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGGYGPGQQG 1173

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
            P   GPGG     A A   P        G   PG       P G    +  P +   AA 
Sbjct: 1174 PGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAA 1233

Query: 359  SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            + R  GG G G  G  G  A A+ A     PG GY P         PG
Sbjct: 1234 AGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQGPG 1279

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 57/180 (31%), Positives = 66/180 (36%), Gaps = 15/180 (8%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY--------AYSPARARTPG 163
            AA+A   R P       GY PG++G   PG A  AA    Y        A + A  R PG
Sbjct: 1867 AAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAAAAAAGRGPG 1920

Query: 164  GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
            G  + P   GPGG     A A   P        G   PG       P G + P       
Sbjct: 1921 G--YGPGQQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGG-YGPGQQGTGA 1977

Query: 344  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP-------STPALAVSSPG 502
              AA +    GG G G  G  G  A A+    A  PG GY P       +  A A S PG
Sbjct: 1978 AAAAAAGSGAGGYGPGQQGPGGPGAAAA----AAGPG-GYGPGQQGPGAAAAAAAGSGPG 2032

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 55/173 (31%), Positives = 65/173 (37%), Gaps = 7/173 (4%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A   R P       GY PG++G   PG A  AA            R PGG  + P 
Sbjct: 1817 AAAAAAAGRGPG------GYGPGQQGPGGPGAAAAAAA----------GRGPGG--YGPG 1858

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
              GPGG     A A   P        G   PG       P G    +  P +   AA + 
Sbjct: 1859 QQGPGGSGAAAAAAGRGPGGYGPGQQGPGGPGAAAAAAGPGGYGPGQQGPGAA--AAAAG 1916

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST-------PALAVSSPG 502
            R  GG G G  G  G+ A A+ A     PG GY P          A A + PG
Sbjct: 1917 RGPGGYGPGQQGPGGSGAAAAAA--GRGPG-GYGPGQQGPGGPGAAAAAAGPG 1966

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 56/169 (33%), Positives = 66/169 (39%), Gaps = 3/169 (1%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSPARARTPGGTAFS 178
            AAA+A   R P       GY PG++G  Q+ PG +  AA         A  R PGG  + 
Sbjct: 1049 AAAAAAAGRGPG------GYGPGQQGPGQQGPGGSGAAAA--------AAGRGPGG--YG 1092

Query: 179  PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
            P   GPGG                  AA  A PG   PG+   G    +  P  PG AA 
Sbjct: 1093 PGQQGPGG---------------PGAAAAAAGPGGYGPGQQRPG----QQGPGGPGAAAA 1133

Query: 359  SPRFG-GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            +   G GG G G  G  G  A A+ A     PG GY P         PG
Sbjct: 1134 AAGRGPGGYGPGQQGPGGPGAAAAAA-AGRGPG-GYGPGQQGPGQQGPG 1180

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 53/156 (33%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAM-TPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFS 235
            GY PG++G   PG A  AA  +    Y P + + PGG++ + A  GPG + P        
Sbjct: 1336 GYGPGQQG---PGAAAAAAAGSGPGGYGPGQ-QGPGGSSAAAAAAGPGRYGP----GQQG 1387

Query: 236  PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------GPA 397
            P  ++A AAG + PG   PG         +  P  PG AA +   G G GG      GP 
Sbjct: 1388 PGAAAAAAAG-SGPGGYGPG---------QQGPGGPGAAAAAAAAGRGPGGYGPGQQGPG 1437

Query: 398  GGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
            G   A A A P      PG  G   +  A A S PG
Sbjct: 1438 GPGAAAAAAGPG--GYGPGQQGPGAAAAAAAGSGPG 1471

[107][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
            RepID=Q5KGG3_CRYNE
          Length = 1786

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 53/159 (33%), Positives = 67/159 (42%), Gaps = 33/159 (20%)
 Frame = +2

Query: 128  YAYSPARA-RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP--GR 298
            Y  SP     +P G  +SP+   P G+SP +  A  SP  S       A  G  +P  GR
Sbjct: 1533 YGQSPMHGGMSPAG--YSPS--SPAGYSPTSPFAVTSPAYSPTSPFAGAAAGAASPWVGR 1588

Query: 299  SPAGRFTPRMSPASPGYAAMSPRFGG-----------------GLGGGPAGG-AGAYAPA 424
               G  +P  SP SP Y+  SP+F                     GG  AG  A  Y+P 
Sbjct: 1589 GGYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPT 1648

Query: 425  SPAYMATSPGMG------------YSPSTPALAVSSPGY 505
            SPAY  TSP  G            YSP++PA + +SP Y
Sbjct: 1649 SPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSY 1687

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
            A SPA   +   Y+P    Q +P     +  +PTY  SPA          SPAY G G  
Sbjct: 1593 ATSPAYSPTSPQYSP-TSPQFSPTSPSFSPSSPTY--SPA----------SPAYGGAGAG 1639

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA--------AMS 361
            +  +  +  SP  S     G  T  + +P        +P  SP SP Y+        A S
Sbjct: 1640 NRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATS 1699

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            PR+        +  +  Y+PASPAY  TSP   YSP++PA + +SP Y
Sbjct: 1700 PRYSP-TSPQFSPTSPTYSPASPAYSPTSPQ--YSPTSPAYSPTSPAY 1744

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 55/164 (33%), Positives = 74/164 (45%), Gaps = 8/164 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAA-MTPTY-AYSPARARTPGGTAFSPAY--TGPG 199
            SP+   S   Y+P        G    A+  +PT  AYSP    +P G   SP Y  T P 
Sbjct: 1616 SPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSPT---SPMGGITSPQYSPTSPR 1672

Query: 200  GFSPINATASFSPIMSS----ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             +SP   + +FSP   S    + A  +AT  R +P        +P  SPASP Y+  SP+
Sbjct: 1673 -YSP--TSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQ 1729

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
                           Y+P SPAY  TSP   YSP++PA   ++P
Sbjct: 1730 ---------------YSPTSPAYSPTSP--AYSPTSPAYGGAAP 1756

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 49/139 (35%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
 Frame = +2

Query: 143  ARARTPGGTAFSPAYTGP--GGFSPINATASFSPIMSSADAAG----------RATPGRM 286
            A   TPGG         P  GG       A+FSPI SSA+  G              G M
Sbjct: 1483 AGGMTPGGAMTPYDNLSPMWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSPMHGGM 1542

Query: 287  TPG----RSPAGRF-TPRMSPASPGYAAMSPRFGGGLG-GGPAGGAGAYAPASPAYMATS 448
            +P      SPAG   T   +  SP Y+  SP  G   G   P  G G Y   SPAY  TS
Sbjct: 1543 SPAGYSPSSPAGYSPTSPFAVTSPAYSPTSPFAGAAAGAASPWVGRGGYGATSPAYSPTS 1602

Query: 449  PGMGYSPSTPALAVSSPGY 505
            P   YSP++P  + +SP +
Sbjct: 1603 P--QYSPTSPQFSPTSPSF 1619

[108][TOP]
>UniRef100_C6HNU4 DNA-directed RNA polymerase II n=1 Tax=Ajellomyces capsulatus H143
           RepID=C6HNU4_AJECH
          Length = 668

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205
           G++P   G R+PG  +  +            +P+  YSP    +PG +  SP +    GF
Sbjct: 473 GFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 527

Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
           SP + A A  SP  S    + + +P   +P  SP    +P  SP SP Y+  SP F    
Sbjct: 528 SPASPAFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 579

Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505
              PA  + A++P SP+Y  TSP +G          SP++P    +SPG+
Sbjct: 580 ---PA--SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGW 624

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
 Frame = +2

Query: 95  GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
           G   D A TP  + SP +     GT    +   P   +     A F+    S  + G + 
Sbjct: 417 GLLSDGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSP 476

Query: 275 PGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFGGGLGGGPAGGAGAY 415
            G  +PG   SP+  F     +PR SP+S      PG +  SPRF    G  PA  + A+
Sbjct: 477 HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPAF 534

Query: 416 APASPAYMATSPGMGYSPSTPALAVSSPGY 505
           AP SPAY  TSP    SP++P+ + +SPG+
Sbjct: 535 APTSPAYSPTSPSYQQSPTSPSYSPTSPGF 564

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
 Frame = +2

Query: 2   DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
           D AA+   + SP         P+ +  ++P R+ G  TP   F       ++  +SP  A
Sbjct: 421 DGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 479

Query: 152 RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
           R+PGG  +SP+       SP N T+  SP  S +      +PG      SP    +P  S
Sbjct: 480 RSPGG-GYSPS-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 528

Query: 332 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           PASP +A  SP               AY+P SP+Y  +     YSP++P  + +SP Y
Sbjct: 529 PASPAFAPTSP---------------AYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSY 571

[109][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
            RepID=C0NEY2_AJECG
          Length = 1234

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205
            G++P   G R+PG  +  +            +P+  YSP    +PG +  SP +    GF
Sbjct: 1039 GFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 1093

Query: 206  SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + A A  SP  S    + + +P   +P  SP    +P  SP SP Y+  SP F    
Sbjct: 1094 SPASPAFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 1145

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505
               PA  + A++P SP+Y  TSP +G          SP++P    +SPG+
Sbjct: 1146 ---PA--SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGW 1190

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
 Frame = +2

Query: 95   GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
            G   D A TP  + SP +     GT    +   P   +     A F+    S  + G + 
Sbjct: 983  GLLSDGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSP 1042

Query: 275  PGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFGGGLGGGPAGGAGAY 415
             G  +PG   SP+  F     +PR SP+S      PG +  SPRF    G  PA  + A+
Sbjct: 1043 HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPAF 1100

Query: 416  APASPAYMATSPGMGYSPSTPALAVSSPGY 505
            AP SPAY  TSP    SP++P+ + +SPG+
Sbjct: 1101 APTSPAYSPTSPSYQQSPTSPSYSPTSPGF 1130

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
 Frame = +2

Query: 2    DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
            D AA+   + SP         P+ +  ++P R+ G  TP   F       ++  +SP  A
Sbjct: 987  DGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 1045

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            R+PGG  +SP+       SP N T+  SP  S +      +PG      SP    +P  S
Sbjct: 1046 RSPGG-GYSPS-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 1094

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            PASP +A  SP               AY+P SP+Y  +     YSP++P  + +SP Y
Sbjct: 1095 PASPAFAPTSP---------------AYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSY 1137

[110][TOP]
>UniRef100_A6SI63 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10
            RepID=A6SI63_BOTFB
          Length = 1742

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 42/121 (34%), Positives = 60/121 (49%)
 Frame = +2

Query: 143  ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
            A +R+PGG  +SP        SP NA+ S SP  S +      T   M  G SP    +P
Sbjct: 1552 AGSRSPGG-GYSPT-------SPFNASPS-SPNFSPSSPGYSPTSPMMGGGASPGYAVSP 1602

Query: 323  RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            R SP SP +   SP +        +  + +Y+P SP Y  TSP +  SP++P+ + +SP 
Sbjct: 1603 RFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNIHGSPTSPSYSPTSPS 1662

Query: 503  Y 505
            Y
Sbjct: 1663 Y 1663

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
 Frame = +2

Query: 32   SPAMPESERGYTPGRE---GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202
            SP    S  GY+P      G  +PG A     +P    SPA   TP   A+SP  T P  
Sbjct: 1573 SPNFSPSSPGYSPTSPMMGGGASPGYAVSPRFSPV---SPAF--TPTSPAYSP--TSPSF 1625

Query: 203  FSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
             SP   + S+SP   +         G  T P  SP    +P  SP SP Y+  SP + G 
Sbjct: 1626 VSP--TSPSYSPTSPNYSPTSPNIHGSPTSPSYSPT---SPSYSPTSPNYSPTSPNYAGN 1680

Query: 380  L---GGGPAGGAGAYAPASPAYMATSP-------GMGYSPSTPALAVSSPGY 505
                G G +  +  Y+P SP +  +SP          YSP++P+ + +SP +
Sbjct: 1681 KVSPGSGLSPTSPVYSPTSPNWSPSSPQHQGNSTSPKYSPTSPSYSPTSPNF 1732

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
 Frame = +2

Query: 113  AMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTP 292
            A TP    SP      GG   +P Y     FSPI +  S +P   + + +G    G M+P
Sbjct: 1498 AATPYDGQSPLNE---GGYLGTPDYGAQ--FSPIQSAGSDTPSGFATEYSGL---GGMSP 1549

Query: 293  ----GRSPAGRFTP----RMSPASPGYAAMSPRFGGG---LGGGPAGG----------AG 409
                 RSP G ++P      SP+SP ++  SP +      +GGG + G          + 
Sbjct: 1550 YAAGSRSPGGGYSPTSPFNASPSSPNFSPSSPGYSPTSPMMGGGASPGYAVSPRFSPVSP 1609

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            A+ P SPAY  TSP    SP++P+ + +SP Y
Sbjct: 1610 AFTPTSPAYSPTSPSF-VSPTSPSYSPTSPNY 1640

[111][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
            RepID=A6QYA7_AJECN
          Length = 1747

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAM-----------TPTYAYSPARARTPGGTAFSPAYTGPGGF 205
            G++P   G R+PG  +  +            +P+  YSP    +PG +  SP +    GF
Sbjct: 1552 GFSP--HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPT---SPGMSITSPRFMSSPGF 1606

Query: 206  SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + A A  SP  S    + + +P   +P  SP    +P  SP SP Y+  SP F    
Sbjct: 1607 SPASPAFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS--- 1658

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGY---------SPSTPALAVSSPGY 505
               PA  + A++P SP+Y  TSP +G          SP++P    +SPG+
Sbjct: 1659 ---PA--SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGW 1703

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
 Frame = +2

Query: 95   GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
            G   D A TP  + SP +     GT    +   P   +     A F+    S  + G + 
Sbjct: 1496 GLLSDGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSP 1555

Query: 275  PGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSPRFGGGLGGGPAGGAGAY 415
             G  +PG   SP+  F     +PR SP+S      PG +  SPRF    G  PA  + A+
Sbjct: 1556 HGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPAF 1613

Query: 416  APASPAYMATSPGMGYSPSTPALAVSSPGY 505
            AP SPAY  TSP    SP++P+ + +SPG+
Sbjct: 1614 APTSPAYSPTSPSYQQSPTSPSYSPTSPGF 1643

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
 Frame = +2

Query: 2    DAAASARIARSPAM-------PESERGYTPGRE-GQRTPGRAFDAAMTPTYA--YSPARA 151
            D AA+   + SP         P+ +  ++P R+ G  TP   F       ++  +SP  A
Sbjct: 1500 DGAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPA-GFTEYQPSGFSGGFSPHGA 1558

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            R+PGG  +SP+       SP N T+  SP  S +      +PG      SP    +P  S
Sbjct: 1559 RSPGG-GYSPS-------SPFN-TSPTSPRYSPSSGYSPTSPGMSIT--SPRFMSSPGFS 1607

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            PASP +A  SP               AY+P SP+Y  +     YSP++P  + +SP Y
Sbjct: 1608 PASPAFAPTSP---------------AYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSY 1650

[112][TOP]
>UniRef100_UPI00016DFC5B UPI00016DFC5B related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016DFC5B
          Length = 609

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 65/170 (38%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
 Frame = +2

Query: 26  ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
           ARSP  P    G   G     +PG     A +P       +AR+PGG   SP    PGG 
Sbjct: 10  ARSPGGPARSPG---GPARSPSPG---GLAQSPGGPSPGGQARSPGGLGRSPGGPSPGGP 63

Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPG---RSPAGRFTPRMSPASPGYAAMSP---- 364
           SP   + S      S    GR+ PG  +PG   RSP G   P     SPG  A SP    
Sbjct: 64  SPGGPSWSPGGPAQSPGGLGRS-PGGPSPGGQARSPGG---PSPGGPSPGGPARSPGGPA 119

Query: 365 RFGGGLG---GGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
           R  GGLG   GGPA   G     SP   A SPG +G SP  P+    SPG
Sbjct: 120 RSPGGLGRSPGGPAQSPGGLG-RSPGGPAQSPGGLGRSPGGPSPGGPSPG 168

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 57/175 (32%), Positives = 67/175 (38%), Gaps = 9/175 (5%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           A +   + RSP  P S  G +PG       G     A +P          +PGG A SP 
Sbjct: 45  ARSPGGLGRSPGGP-SPGGPSPGGPSWSPGG----PAQSPGGLGRSPGGPSPGGQARSPG 99

Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPG-RMTPG---RSPAGRFTPRMSPA----S 340
              PGG SP     S      S    GR+  G   +PG   RSP G   P  SP     S
Sbjct: 100 GPSPGGPSPGGPARSPGGPARSPGGLGRSPGGPAQSPGGLGRSPGG---PAQSPGGLGRS 156

Query: 341 PGYAAMS-PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
           PG  +   P  GG   GGPA   G  +P  PA     P  G    +P     SPG
Sbjct: 157 PGGPSPGGPSPGGPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGPARSPG 211

[113][TOP]
>UniRef100_Q206M1 Major ampullate spidroin 2 (Fragment) n=1 Tax=Latrodectus hesperus
           RepID=Q206M1_9ARAC
          Length = 1198

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 58/170 (34%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
 Frame = +2

Query: 8   AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
           AA+A  A  P     ++GY PG  G      A  A      AY P  +   G  A + A 
Sbjct: 472 AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGRQQAYGPGGS---GAAAAAAAG 527

Query: 188 TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
           +GP G+ P  A          A AA  A  G   PGR  A  + P  S A+   AA  P 
Sbjct: 528 SGPSGYGPGAAGPG------GAGAAAAAAAGGAGPGRQQA--YGPGGSGAAAAAAAGGPG 579

Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP----STPALAVSSPGY 505
           +GG  G GP GGAGA A A+          GY P    +  A A   PGY
Sbjct: 580 YGGQQGYGP-GGAGAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGY 628

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 57/164 (34%), Positives = 66/164 (40%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           AAA+A  A  P       GY PG  G   PG A  AA     A + A    PGG    P+
Sbjct: 118 AAAAAAAAAGPG----PSGYGPGTAGPSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 168

Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
             GP G         F P  S A AA  A  G   PGR     + P  S A+   AA  P
Sbjct: 169 GYGPSGSG---GQQGFGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGP 223

Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
            +GG  G GP GGAGA A A+           Y P     A ++
Sbjct: 224 GYGGQQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAA 266

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 62/167 (37%), Positives = 68/167 (40%), Gaps = 1/167 (0%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           AAA+A  A  P       GY PG  G   PG A  AA     A + A    PGG    P+
Sbjct: 262 AAAAAATAAGPG----PSGYGPGAAGPSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 312

Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
             GP G         + P  S A AA  A  G   PGR             S G AA  P
Sbjct: 313 GYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG------YGQGSSGAAAGGP 363

Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
            +GG  G GP GGAGA   A+ A  A  PG  GY P   A   S PG
Sbjct: 364 GYGGQQGYGP-GGAGA---AAAAAAAAGPGPSGYGPG--AAGSSGPG 404

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 59/160 (36%), Positives = 69/160 (43%), Gaps = 1/160 (0%)
 Frame = +2

Query: 26  ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
           AR  A P  ++GY PG  G      A  AA      Y   +   PGG A + A    GG 
Sbjct: 1   ARGGAGPGRQQGYGPGSSG------AAAAAAAGGPGYGGQQGYGPGG-AGAAAVAAAGGA 53

Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            P     ++ P  S A AA  A  G   PGR     + P  S A+   AA  P +GG  G
Sbjct: 54  GP-GTQQAYGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGQQG 110

Query: 386 GGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
            GP GGAGA   A+ A  A  PG  GY P T     S PG
Sbjct: 111 YGP-GGAGA---AAAAAAAAGPGPSGYGPGT--AGPSGPG 144

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 56/166 (33%), Positives = 66/166 (39%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
            AAA+A  A  P       GY PG  G   PG A  AA     A + A    PGG    P+
Sbjct: 760  AAAAAATAAGPG----PSGYGPGAAGPSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 810

Query: 185  YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
              GP G         + P  S A AA  A  G   PGR     +    S A+   AA  P
Sbjct: 811  GYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGQGSSGAAAAAAAGGP 865

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
             +GG  G GP GGAGA A A+           Y P     A ++ G
Sbjct: 866  GYGGQQGFGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAAAG 910

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 56/183 (30%), Positives = 72/183 (39%), Gaps = 19/183 (10%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRT----------------PGRAFDAAMTPTYAY 136
            A A+A  A   A P  ++GY PG  G                   PG A  AA       
Sbjct: 591  AGAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGPGYGDQQGYGPGGAGAAAAAAAAGP 650

Query: 137  SPARARTPGGT---AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPA 307
               +A  PGG+   A + A +GP G+ P  A        ++A AAG A PGR        
Sbjct: 651  GRQQAYGPGGSGAAAAAAAGSGPSGYGP-GAAGPGGAAAAAAAAAGGAGPGRQQA----- 704

Query: 308  GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487
              + P  S A+   AA  P +GG  G GP GGAGA A A+           Y P     A
Sbjct: 705  --YGPGGSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAAAAGGAGPGTQQAYGPGGSGAA 761

Query: 488  VSS 496
             ++
Sbjct: 762  AAA 764

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 55/164 (33%), Positives = 65/164 (39%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           AAA+A  A  P       GY PG  G   PG A  AA     A + A    PGG    P+
Sbjct: 378 AAAAAAAAAGPG----PSGYGPGAAGSSGPGGAGAAA-----AAAAAGGSGPGGYGQGPS 428

Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
             GP G         + P  S A AA  A  G   PGR     + P    A+   AA  P
Sbjct: 429 VYGPSG---PGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGP--GGAAAAAAAGGP 481

Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
            +GG  G GP GGAGA A A+           Y P     A ++
Sbjct: 482 GYGGQQGYGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAA 524

[114][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 10 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1F
          Length = 1840

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS-FS 235
            GY+P      TPG       +  Y  SP    +P   A+ P    PGG++P + + S  S
Sbjct: 1497 GYSPA--WSPTPGSPGSPGPSSPYIPSPGELYSPTSPAYEPR--SPGGYTPQSPSYSPTS 1552

Query: 236  PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY 415
            P  S    +   T    +P        +P  SP SP Y+  SP +        +  + +Y
Sbjct: 1553 PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSY 1604

Query: 416  APASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1605 SPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1632

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1594 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1649

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P R      +P  SP SP Y+  SP+
Sbjct: 1650 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPK 1708

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +           + +Y+P+SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1709 Y--------TPTSPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKY 1744

[115][TOP]
>UniRef100_UPI00016DFC5C UPI00016DFC5C related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016DFC5C
          Length = 579

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 64/170 (37%), Positives = 73/170 (42%), Gaps = 11/170 (6%)
 Frame = +2

Query: 26  ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
           ARSP  P      +PG  G  +PG                +AR+PGG   SP    PGG 
Sbjct: 10  ARSPGGPAR----SPGSPGGPSPG---------------GQARSPGGLGRSPGGPSPGGP 50

Query: 206 SPINATASFSPIMSSADAAGRATPGRMTPG---RSPAGRFTPRMSPASPGYAAMSP---- 364
           SP   + S      S    GR+ PG  +PG   RSP G   P     SPG  A SP    
Sbjct: 51  SPGGPSWSPGGPAQSPGGLGRS-PGGPSPGGQARSPGG---PSPGGPSPGGPARSPGGPA 106

Query: 365 RFGGGLG---GGPAGGAGAYAPASPAYMATSPG-MGYSPSTPALAVSSPG 502
           R  GGLG   GGPA   G     SP   A SPG +G SP  P+    SPG
Sbjct: 107 RSPGGLGRSPGGPAQSPGGLG-RSPGGPAQSPGGLGRSPGGPSPGGPSPG 155

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 57/175 (32%), Positives = 67/175 (38%), Gaps = 9/175 (5%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           A +   + RSP  P S  G +PG       G     A +P          +PGG A SP 
Sbjct: 32  ARSPGGLGRSPGGP-SPGGPSPGGPSWSPGG----PAQSPGGLGRSPGGPSPGGQARSPG 86

Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPG-RMTPG---RSPAGRFTPRMSPA----S 340
              PGG SP     S      S    GR+  G   +PG   RSP G   P  SP     S
Sbjct: 87  GPSPGGPSPGGPARSPGGPARSPGGLGRSPGGPAQSPGGLGRSPGG---PAQSPGGLGRS 143

Query: 341 PGYAAMS-PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
           PG  +   P  GG   GGPA   G  +P  PA     P  G    +P     SPG
Sbjct: 144 PGGPSPGGPSPGGPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGPARSPG 198

[116][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
            RepID=Q8MX30_NAEGR
          Length = 1590

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 43/117 (36%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
 Frame = +2

Query: 149  ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGR------ATPGRMTPGRSPAG 310
            A TP G   SP Y G  GFSP    ++FSP+ SS  + G       ++PG  +P      
Sbjct: 1491 AMTPLGRTPSPEYQG--GFSPSPYNSAFSPVASSPTSPGHQGGYSPSSPGNYSPTSPAYS 1548

Query: 311  RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA 481
              +P  SP SP Y+  SP                Y+P SPAY  TSP   YSP++PA
Sbjct: 1549 PSSPNYSPTSPAYSPTSPN---------------YSPTSPAYSPTSP--NYSPTSPA 1588

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
 Frame = +2

Query: 272  TPGRMTP-GRSPAGRFTPRMSPASPGYA----AMSPRFGGGLGGGPAGGAGAYAPASPAY 436
            T G MTP GR+P+  +    SP+    A    A SP   G  GG      G Y+P SPAY
Sbjct: 1488 TQGAMTPLGRTPSPEYQGGFSPSPYNSAFSPVASSPTSPGHQGGYSPSSPGNYSPTSPAY 1547

Query: 437  MATSPGMGYSPSTPALAVSSPGY 505
              +SP   YSP++PA + +SP Y
Sbjct: 1548 SPSSP--NYSPTSPAYSPTSPNY 1568

[117][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
            54-1255 RepID=B6H9U6_PENCW
          Length = 1733

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 52/189 (27%), Positives = 76/189 (40%), Gaps = 35/189 (18%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA- 220
            P +   Y  G +   T          PT   +  +A T     FSPA   PGG+SP +  
Sbjct: 1507 PMASSPYMAGGDPNSTFSPMHQIGQEPTGGLTEYQATTSTFGGFSPAARSPGGYSPTSPF 1566

Query: 221  -TASFSPIMSSADAAGRATPG---RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 388
             T+  SP  S + +    +PG     +PG SPA   +P   P SP Y+  SP +G     
Sbjct: 1567 NTSPTSPGYSPSSSYSPTSPGIGMMTSPGFSPA---SPTFQPTSPAYSPTSPAYGQASPT 1623

Query: 389  GPA-----------------------GGAGAYAPASPAYMATSPGMG-------YSPSTP 478
             P+                         + A++P SP+Y  TSP +G        SP++P
Sbjct: 1624 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGARHLSPTSPTSP 1683

Query: 479  ALAVSSPGY 505
                +SPG+
Sbjct: 1684 KYTPTSPGW 1692

[118][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48673
          Length = 1880

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 11/178 (6%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPG-GTAFS 178
            A  S   + SP M    +G TP      +P     + MTP    +SPA + + G   A+S
Sbjct: 1496 AMGSPSQSMSPQMTPWNQGATPMHGASWSP--MMGSGMTPGGPGFSPANSESTGFSPAYS 1553

Query: 179  PAYT----GPG----GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            PA++     PG    G+SP + + S  SP  S A  +   T    +P        +P  S
Sbjct: 1554 PAWSPQPQSPGSPSPGYSPTSPSYSPTSPGYSPASPSYSPTSPSYSPTSPSYSPTSPSYS 1613

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P SP Y+  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1614 PTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1661

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+   S   Y+P          ++ +  +P+Y+     YSP+  + +P   ++SP  T 
Sbjct: 1714 SPSYSPSSPKYSPTSPSYSPTSPSY-SPQSPSYSPGSPSYSPSSPKYSPTSPSYSP--TS 1770

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP +   S  SP  S A  +   T  + +P        +P  SP SP Y+  SP +
Sbjct: 1771 PS-YSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY 1829

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSP-GMGYSPSTPALAVSSPGY 505
                    +  +  Y+P+SP Y  TSP G  YSP++P+ + +SP Y
Sbjct: 1830 --------SPTSPKYSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSY 1867

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1685

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1686 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPS 1744

Query: 368  FGGGLGGGPAGG------AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  G              + +Y+P SP+Y  TSP   +SPS+P  + +SP Y
Sbjct: 1745 YSPGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSP--NFSPSSPTYSPASPSY 1794

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR-TPGGTAFSPAYTG 193
            SP+       Y+PG     +P     +  +P+Y+     YSP     +P    +SPA   
Sbjct: 1735 SPSYSPQSPSYSPGSPSY-SPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPS 1793

Query: 194  PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
                SP  + +S  P  S        T  + +P        +P+ SP+SP Y+  SP+  
Sbjct: 1794 YSPTSPKYSPSS--PKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSPTSPK-- 1849

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMG 460
               G   +  + +Y+P SP+Y  TSPGMG
Sbjct: 1850 ---GSTYSPTSPSYSPTSPSYSPTSPGMG 1875

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGF 205
            SP+   +   Y+P +    +PG    +  +P Y  SP    +P  +  SP+Y  T P  F
Sbjct: 1728 SPSYSPTSPSYSP-QSPSYSPGSPSYSPSSPKY--SPT---SPSYSPTSPSYSPTSPN-F 1780

Query: 206  SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + T S  SP  S        +  + +P        +P+ SPASP Y+  SP++    
Sbjct: 1781 SPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKY---- 1836

Query: 383  GGGPAGGAGAYAPASP---AYMATSPGMGYSPSTPALAVSSPG 502
                +  +  Y+P SP    Y  TSP   YSP++P+ + +SPG
Sbjct: 1837 ----SPSSPTYSPTSPKGSTYSPTSPS--YSPTSPSYSPTSPG 1873

[119][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
            RepID=Q7SDN0_NEUCR
          Length = 1752

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
 Frame = +2

Query: 65   TPGREGQRTPGRAFDAAMTPTYA-YSP---ARARTPGGTAFSPAYTGPGGF--------- 205
            TP   G       F  + +PT   +SP   A + +P    F   Y G GG+         
Sbjct: 1506 TPYDTGSPMADSGFLGSYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVGGYGSGTSYSSA 1565

Query: 206  -SPINATASFSPIMSSADAAGRATPGRMTPGRSP-------AGRF--TPRMSPASPGYAA 355
             SP  AT+ F+P  +S  + G  +P     G SP       AGRF  +P+ SP+SP ++ 
Sbjct: 1566 TSP-RATSPFTP--TSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPSFSP 1622

Query: 356  MSPRFGGGLGGGPAGG--AGAYAPASPA---YMATSPGMGYSPSTPALAVSSPGY 505
             SP    G    P+    + +Y+PASPA   Y  TSP   +SP++P+ + +SP Y
Sbjct: 1623 TSPMLRPGSPTSPSYSPTSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSY 1677

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 48/140 (34%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
 Frame = +2

Query: 155  TPGGTAFSPAYTGP---------GGFSPINATASFSPIMSSADAAGRATPGRM----TPG 295
            T   +A SP  T P         GG+SP +  A +SP     D+AGR          +P 
Sbjct: 1560 TSYSSATSPRATSPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPS 1619

Query: 296  RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA-YAPASPA---------YMAT 445
             SP        SP SP Y+  SP +       PA  A A Y+P SPA         Y  T
Sbjct: 1620 FSPTSPMLRPGSPTSPSYSPTSPSYS------PASPAAARYSPTSPAQQFSPTSPSYSPT 1673

Query: 446  SPGMGYSPSTPALAVSSPGY 505
            SP   YSP++PA   +SP Y
Sbjct: 1674 SP--SYSPASPAFQATSPSY 1691

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 11/168 (6%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGR-AFDAAMTPTY-AYSPARARTPGGTAFSPAYTGPGGF 205
            SP+ P +  GY+P      + GR A     +P+  ++SP       G+  SP+Y      
Sbjct: 1586 SPSSPAA--GYSPSSPLLDSAGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSY------ 1637

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGL 382
            SP   + S+SP   +A      +P +     SP+   T P  SPASP + A SP +    
Sbjct: 1638 SP--TSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPASPAFQATSPSYSPAS 1695

Query: 383  GGGPAGGAGAYAPASPAYMATSPGM--------GYSPSTPALAVSSPG 502
                     AY+P SP++   SPG         GYSP++P  +  +PG
Sbjct: 1696 PTWSPTSPDAYSPTSPSFQR-SPGQQLSPTSPTGYSPTSPQYSPRTPG 1742

[120][TOP]
>UniRef100_A7EKT1 DNA-directed RNA polymerase n=2 Tax=Sclerotinia sclerotiorum
            RepID=A7EKT1_SCLS1
          Length = 1746

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 41/121 (33%), Positives = 60/121 (49%)
 Frame = +2

Query: 143  ARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
            A +R+PGG  +SP        SP NA+ + SP  S +      T   M  G SP    +P
Sbjct: 1556 AGSRSPGG-GYSPT-------SPFNASPT-SPQFSPSSPGYSPTSPMMGGGASPGYSVSP 1606

Query: 323  RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            R SP SP +   SP +        +  + +Y+P SP Y  TSP +  SP++P+ + +SP 
Sbjct: 1607 RFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNIHGSPTSPSYSPTSPS 1666

Query: 503  Y 505
            Y
Sbjct: 1667 Y 1667

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
 Frame = +2

Query: 32   SPAMPESERGYTPGRE---GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202
            SP    S  GY+P      G  +PG +     +P    SPA   TP   A+SP  T P  
Sbjct: 1577 SPQFSPSSPGYSPTSPMMGGGASPGYSVSPRFSPV---SPAF--TPTSPAYSP--TSPSF 1629

Query: 203  FSPINATASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
             SP   + S+SP   +         G  T P  SP    +P  SP SP Y+  SP + G 
Sbjct: 1630 VSP--TSPSYSPTSPNYSPTSPNIHGSPTSPSYSPT---SPSYSPTSPNYSPTSPNYAGN 1684

Query: 380  L---GGGPAGGAGAYAPASPAYMATSP-------GMGYSPSTPALAVSSPGY 505
                G G +  +  Y+P SP +  +SP          YSP++P+ + +SP +
Sbjct: 1685 KVSPGSGLSPTSPVYSPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTSPNF 1736

[121][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4NDK9_DROWI
          Length = 1890

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 55/154 (35%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSP---ARARTPGGTAFSP-AYTGPGGFSPINATA 226
            G TP      TP   +    TP Y +SP   A + TPGG +FSP A +   G SP     
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRY-FSPQGHASSMTPGGPSFSPAAASDASGMSP----- 1547

Query: 227  SFSPIMSSADAAGRATPG-RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
            S+SP   +   +  ++PG  M+P    +   +P  SP SP Y A SP   GG     +  
Sbjct: 1548 SWSP---AHPGSSPSSPGPSMSPYFPTSPSVSPSYSPTSPNYTASSP--SGGASPNYSPS 1602

Query: 404  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  Y+P SP Y ATSP   Y+ +TP   + S GY
Sbjct: 1603 SPNYSPTSPLYAATSP--RYASTTPNFNLQSTGY 1634

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
 Frame = +2

Query: 110  AAMTPTY-AYSPARARTPGGTA--FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPG 280
            ++MTP   ++SPA A    G +  +SPA+ G    SP  + + + P   S   +   T  
Sbjct: 1525 SSMTPGGPSFSPAAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPTSPSVSPSYSPTSP 1584

Query: 281  RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM- 457
              T   SP+G  +P  SP+SP Y+  SP                YA  SP Y +T+P   
Sbjct: 1585 NYTAS-SPSGGASPNYSPSSPNYSPTSP---------------LYAATSPRYASTTPNFN 1628

Query: 458  ----GYSPSTPALAVSSPGY 505
                GYSPS+   + +SP Y
Sbjct: 1629 LQSTGYSPSSSGYSPTSPVY 1648

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
            AA S R A + P       GY+P   G       +        +P++A      YSP  A
Sbjct: 1614 AATSPRYASTTPNFNLQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNA 1673

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
             +P  + ++P       +SP   + S+SP   S+ +    +P     +P  SP    +P 
Sbjct: 1674 YSPSSSNYTP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1722

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490
             +P +P Y+  SP +       PA  A +     Y+P SP Y   SP    SP +P    
Sbjct: 1723 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1782

Query: 491  SSPGY 505
             SP Y
Sbjct: 1783 GSPQY 1787

[122][TOP]
>UniRef100_A7AWJ0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AWJ0_BABBO
          Length = 1746

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
 Frame = +2

Query: 116  MTPTY-AYSPAR-ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT 289
            M+PT   YSP        G  +SPA       SP+ +  S  P+ S    A   T    +
Sbjct: 1581 MSPTSPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTS--PVYSPTSPAYSPTSPAYS 1638

Query: 290  PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 469
            P        +P  SP SP Y+  SP +        +  + AY+P SPAY  TSP +GY P
Sbjct: 1639 PTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSPNLGYLP 1690

Query: 470  STPALAVSSPGY 505
            ++PA   +SP Y
Sbjct: 1691 TSPAYRPTSPAY 1702

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
 Frame = +2

Query: 80   GQRTPGRAFDAAMTPTYA-----YSPAR-ARTPGGTAFSPAY-----TGPGGFSPIN-AT 223
            G  +P     +  +P Y      YSPA  A +P    +SP       T P  +SP + A 
Sbjct: 1579 GMMSPTSPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTSPVYSPTSPA-YSPTSPAY 1637

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA-- 397
            +  SP  S    A   T    +P        +P  SP SP Y+  SP  G  L   PA  
Sbjct: 1638 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNLGY-LPTSPAYR 1696

Query: 398  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              + AY+P SPAY  TSP   YSP++P  + +SP Y
Sbjct: 1697 PTSPAYSPTSPAYSPTSP--AYSPTSPVYSPTSPEY 1730

[123][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
            RepID=C5FCL2_NANOT
          Length = 1748

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
 Frame = +2

Query: 2    DAAASARIARSP-------AMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARART 157
            D AA+   + SP       + P+ +  ++P R+        F     P+Y  +SP   R+
Sbjct: 1501 DGAATQYDSGSPMQENMYISSPDPDSQFSPVRQAGSENAVGFADYQPPSYGGFSPHEPRS 1560

Query: 158  PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA 337
            PGG  +SP+       SP N + +                   +P  SP+  +    SP 
Sbjct: 1561 PGG-GYSPS-------SPFNTSPT-------------------SPAYSPSSGY----SPT 1589

Query: 338  SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG--YSPSTPALAVSSPGY 505
            SPG +  SPRF       PA  + ++AP SPAY  TSPG G   SP++P+ + +SPG+
Sbjct: 1590 SPGMSITSPRFISSPAFSPA--SPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGF 1645

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 56/173 (32%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
 Frame = +2

Query: 14   SARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY- 187
            S R   SPA   +   + P           +  A +PT  +YSP    +PG +  SP+Y 
Sbjct: 1597 SPRFISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYS 1653

Query: 188  -TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGR--SPAGRFTPRMSPASPGYAAM 358
             T P  FSP  A+  FSP   S      A  G    GR  SP    +P+ +P SPG++  
Sbjct: 1654 PTSPS-FSP--ASPVFSPTSPSYSPTSPALGGT---GRHLSPTSPTSPKYTPTSPGWSPT 1707

Query: 359  SPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPG----MGYSPSTPALAVSSP 499
            SP               AY+P SP +    TSPG     GYSP++P    +SP
Sbjct: 1708 SPE--------------AYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPTSP 1746

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 59/193 (30%), Positives = 77/193 (39%), Gaps = 35/193 (18%)
 Frame = +2

Query: 32   SPAMPESERG-YTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFS 208
            SP  P S  G Y+P      +P      A +P+  YSP    +PG +  SP +     FS
Sbjct: 1554 SPHEPRSPGGGYSPSSPFNTSPT---SPAYSPSSGYSPT---SPGMSITSPRFISSPAFS 1607

Query: 209  PINATASFSPIMSSADAAGRATPGR-------------MTPGRSPAGRF----------- 316
            P  A+ SF+P   ++ A    +PG               +PG SP               
Sbjct: 1608 P--ASPSFAP---TSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPA 1662

Query: 317  TPRMSPASPGYAAMSPRFGG-GLGGGPAGGAG-AYAPASP--------AYMATSPGMGYS 466
            +P  SP SP Y+  SP  GG G    P       Y P SP        AY  TSP    S
Sbjct: 1663 SPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFSGS 1722

Query: 467  PSTPALAVSSPGY 505
            P++P    +SPGY
Sbjct: 1723 PTSPG-GPTSPGY 1734

[124][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1D
          Length = 1764

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 44/137 (32%), Positives = 64/137 (46%)
 Frame = +2

Query: 95   GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
            G  F +A +P    SPA   TP     +PAY   G +SP    A       ++ A    +
Sbjct: 1525 GMFFGSAPSPMGGISPAM--TPWNQGATPAY---GAWSPSVGGAMSPSYSPTSPAYEPRS 1579

Query: 275  PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 454
            PG  TP        +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP 
Sbjct: 1580 PGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTSPSYSPTSPSYSPTSP- 1630

Query: 455  MGYSPSTPALAVSSPGY 505
              YSP++P+ + +SP Y
Sbjct: 1631 -SYSPTSPSYSPTSPSY 1646

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP        +P  +  S
Sbjct: 1563 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1622

Query: 179  PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
            P+Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y
Sbjct: 1623 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1681

Query: 350  AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
            +  SP +              +  + +Y+P SP+Y  TSP               YSP++
Sbjct: 1682 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1741

Query: 476  PALAVSSPGY 505
            P+ + +SP Y
Sbjct: 1742 PSYSPTSPNY 1751

[125][TOP]
>UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
            RepID=Q2HDK0_CHAGB
          Length = 1756

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
 Frame = +2

Query: 95   GRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRAT 274
            G  F ++    YA SP RA +P  T+ +  ++  GG+SP  + A +SP     DA GR  
Sbjct: 1546 GGGFGSSTVNPYATSP-RATSPFSTSPTSPFSYGGGYSP-TSPAGYSPTSPLLDAGGRYA 1603

Query: 275  PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP--AGGAGAYAPASPA----Y 436
                          +P+ SP+SP ++  SP    G    P  +  + +Y+PASPA    Y
Sbjct: 1604 S-------------SPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSYSPASPAATRHY 1650

Query: 437  MATSPGMGYSPSTPALAVSSPGY 505
              TSP    SP++P+ + +SP Y
Sbjct: 1651 SPTSPQQFNSPTSPSYSPTSPSY 1673

[126][TOP]
>UniRef100_C4Y5N3 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
           42720 RepID=C4Y5N3_CLAL4
          Length = 281

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
           SP  P S  G +P   G  +PG       +PTY+     YSP    +P  +  SP+Y  T
Sbjct: 54  SPTSPFSYGGASPAFGGATSPGYG---GTSPTYSPTSPSYSPT---SPSYSPTSPSYSPT 107

Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
            P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 108 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 166

Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 167 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 202

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
           SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 87  SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 142

Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
            P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 143 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 201

Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 202 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 237

[127][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8Q5I6_MALGO
          Length = 1607

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
 Frame = +2

Query: 110  AAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRATPGRM 286
            AA   + AYSP   R   G A SP+Y      SP + + S  SP++ +++A    T  RM
Sbjct: 1380 AAGATSPAYSPTSPRIFAG-ATSPSY------SPTSPSYSPSSPVIDASNARSTYT-SRM 1431

Query: 287  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG---GAGA--YAPASPAYMATSP 451
            +P        +P  SP SP Y+  SP++      GP G   GA    Y+P SP Y  TSP
Sbjct: 1432 SPASPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPTSPQYSPTSP 1491

Query: 452  GMGYSPSTPALAVSSPGY 505
               YSP++P  + +SP Y
Sbjct: 1492 --QYSPTSPQYSPTSPQY 1507

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
 Frame = +2

Query: 149  ARTPGGTAFSPAYTGPGGFSP---INATASFSPIMS---SADAAGRATPGRMTPGRSPAG 310
            ARTPGG   +P  +G         +   ASFSP++         G       +P R+P G
Sbjct: 1285 ARTPGG--MTPYDSGSPNIDDDFRVQQQASFSPLVQVGGDEGGYGEYLSAGQSPMRTPLG 1342

Query: 311  RFTPR--MSPASPGYAAMSPRFGG---GLGG-----GPAGGAG-AYAPASPAYMATSPGM 457
              +P    +P SPGY   SP +      LG      G AG    AY+P SP   A +   
Sbjct: 1343 AQSPGYGFAPTSPGYVPTSPAYNATSPALGAMSPWVGAAGATSPAYSPTSPRIFAGATSP 1402

Query: 458  GYSPSTPALAVSSP 499
             YSP++P+ + SSP
Sbjct: 1403 SYSPTSPSYSPSSP 1416

[128][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
            RepID=Q84KP6_CYAME
          Length = 1819

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 56/178 (31%), Positives = 74/178 (41%), Gaps = 34/178 (19%)
 Frame = +2

Query: 62   YTPGREGQRTPGRAFDA----------------AMTPTYAYSPARARTPGGTAFSPAYT- 190
            YTPG     TPG A D                 + +P   +SPA +   GG A   A   
Sbjct: 1539 YTPGA----TPGMASDGFAAPWTPSLNLASPYGSFSPAVGFSPATSTYVGGDAMKDAGRY 1594

Query: 191  GPGGFSPI---NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM--------SPA 337
            G GG SP    +A+A+      S    G  T G  +P        +PR+        SP 
Sbjct: 1595 GLGGTSPFASFSASATTPNWAPSPAGGGTGTLGAFSPSSPAYSPTSPRLVSPTSPAYSPT 1654

Query: 338  SPGYAAMSPRFGGGLGG----GPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVS 493
            SP Y+  SP +           PA    + AY+P SPAY  +SP + YSPS+P +A S
Sbjct: 1655 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSPNVAYS 1712

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 9/167 (5%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSP 211
            SPA   +   Y+P          A+          SPA + +    A+SP+      +SP
Sbjct: 1655 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSPNVA-YSP 1713

Query: 212  INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM-----SPASPG--YAAMSPRF 370
             +   ++SP   +  A   ++P       SP   ++P       SP+SP   Y+  SP  
Sbjct: 1714 SSPNVAYSPSSPNV-AYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPN- 1771

Query: 371  GGGLGGGPAGGAGAYAPASP--AYMATSPGMGYSPSTPALAVSSPGY 505
               +   P+    AY+P+SP  AY  +SP + YSPS+PA + SSP Y
Sbjct: 1772 ---VAYSPSSPV-AYSPSSPNVAYSPSSPNVAYSPSSPAFSPSSPVY 1814

[129][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
            thaliana RepID=RPB1_ARATH
          Length = 1840

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP    +   Y+P   G      A+    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1570 SPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1625

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    A   T    +P        +P  SP SP Y+  SP 
Sbjct: 1626 SPS-YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1684

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SPAY  TSP  GYSP++P+ + +SP Y
Sbjct: 1685 Y--------SPTSPSYSPTSPAYSPTSP--GYSPTSPSYSPTSPSY 1720

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 11/169 (6%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193
            SP+   +   Y+P          A+     A +PT  AYSP    +P  +  SP+Y  T 
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT---SPSYSPTSPSYSPTS 1675

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP + + S  SP  S    A   T    +P        +P   P SP Y   S ++
Sbjct: 1676 PS-YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKY 1734

Query: 371  GGGLGGGPAGG----AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +   P+      A  Y+P SP Y  TSP   YSP++P+ + SSP Y
Sbjct: 1735 SPSIAYSPSNARLSPASPYSPTSPNYSPTSPS--YSPTSPSYSPSSPTY 1781

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 45/155 (29%), Positives = 57/155 (36%), Gaps = 7/155 (4%)
 Frame = +2

Query: 62   YTPGREGQRTPGRA-------FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA 220
            Y  G E   TP R+        +  M+P Y  SP    +P   A    Y G   FSP ++
Sbjct: 1483 YMDGLEFGMTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSS 1542

Query: 221  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 400
                                             P  SP+SPGY+  SP            
Sbjct: 1543 ---------------------------------PGYSPSSPGYSPTSP------------ 1557

Query: 401  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                Y+P SP Y  TSPG  YSP++P  + SSPGY
Sbjct: 1558 ---GYSPTSPGYSPTSPG--YSPTSPTYSPSSPGY 1587

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAYT-- 190
            SP+   +   Y+P          ++    +P+Y     AYSP    +PG +  SP+Y+  
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPT---SPGYSPTSPSYSPT 1716

Query: 191  ----GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
                GP   S    +A +SP ++ + +  R +P       SP    +P  SP SP Y+  
Sbjct: 1717 SPSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPA------SPYSPTSPNYSPTSPSYSPT 1770

Query: 359  SPRFGGGLGGGPAGGAGAYAPASP----AYMATSPGMGYSPSTPALAVSSPG 502
            SP +        +  +  Y+P+SP    A    SP  GYSP+ P  + SS G
Sbjct: 1771 SPSY--------SPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGYSPSSTG 1814

[130][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
            pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
          Length = 1811

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
            AAAS R A + P       GY+P   G       +        +P++A      YSP  A
Sbjct: 1535 AAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1594

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
             +P  T +SP       +SP   + S+SP   S+ +    +P     +P  SP    +P 
Sbjct: 1595 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1643

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490
             +PA+P Y+  SP +       PA  A       Y+P SP Y   SP    SP +P    
Sbjct: 1644 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1703

Query: 491  SSPGY 505
             SP Y
Sbjct: 1704 GSPQY 1708

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1419 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1470

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 1471 WSP------AHPGSSPSSPAPSMSP---YYPASPSVSPSYSPTSPNY---TASSPGGASP 1518

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TSP   Y+ ++P  A ++P +
Sbjct: 1519 NYSPSSPNYSPTSP--LYAAASPRYASTTPNF 1548

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
            SP+   +   YTP                TP+Y+  SP  + +P  +  SPAY+  G  +
Sbjct: 1634 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1678

Query: 206  SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + T S  SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+     
Sbjct: 1679 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1733

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
               P G    Y+  SP Y   SP M  YSPS+   + +SP Y
Sbjct: 1734 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1770

[131][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
            pseudoobscura RepID=Q29IN2_DROPS
          Length = 1889

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
            AAAS R A + P       GY+P   G       +        +P++A      YSP  A
Sbjct: 1613 AAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1672

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
             +P  T +SP       +SP   + S+SP   S+ +    +P     +P  SP    +P 
Sbjct: 1673 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490
             +PA+P Y+  SP +       PA  A       Y+P SP Y   SP    SP +P    
Sbjct: 1722 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781

Query: 491  SSPGY 505
             SP Y
Sbjct: 1782 GSPQY 1786

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---YYPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TSP   Y+ ++P  A ++P +
Sbjct: 1597 NYSPSSPNYSPTSP--LYAAASPRYASTTPNF 1626

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
            SP+   +   YTP                TP+Y+  SP  + +P  +  SPAY+  G  +
Sbjct: 1712 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756

Query: 206  SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + T S  SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+     
Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
               P G    Y+  SP Y   SP M  YSPS+   + +SP Y
Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848

[132][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
            RepID=B4H2R8_DROPE
          Length = 1804

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
            AAAS R A + P       GY+P   G       +        +P++A      YSP  A
Sbjct: 1547 AAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1606

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
             +P  T +SP       +SP   + S+SP   S+ +    +P     +P  SP    +P 
Sbjct: 1607 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1655

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490
             +PA+P Y+  SP +       PA  A       Y+P SP Y   SP    SP +P    
Sbjct: 1656 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1715

Query: 491  SSPGY 505
             SP Y
Sbjct: 1716 GSPQY 1720

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
            SP+   +   YTP                TP+Y+  SP  + +P  +  SPAY+  G  +
Sbjct: 1646 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1690

Query: 206  SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + T S  SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+     
Sbjct: 1691 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1745

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
               P G    Y+  SP Y   SP M  YSPS+   + +SP Y
Sbjct: 1746 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1782

[133][TOP]
>UniRef100_C2AIT9 Putative uncharacterized protein n=1 Tax=Tsukamurella paurometabola
           DSM 20162 RepID=C2AIT9_TSUPA
          Length = 623

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
 Frame = +2

Query: 65  TPGREGQRT-----PGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229
           TPG + QR+     P     AA     A + A AR   G A + A T  G  +   A A 
Sbjct: 465 TPGADTQRSTSTGSPAPVVSAAAARGPALTGAVARADSGRAGAEALTTDGAAT---AAAV 521

Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +P +S+ D A  +TP R TPGR+   R TP  + A P  ++ +          P+GG G
Sbjct: 522 PTPSVSAPDDAAASTPERATPGRTTPERSTPADTIARPSDSSATTGSNADSPQSPSGGTG 581

Query: 410 --AYAPASPAYMATSPGMGYSPSTPALAVSS 496
             + A +SP+    S G G SP++   A SS
Sbjct: 582 VTSSAASSPSGTGESAGSGASPASTGSAASS 612

[134][TOP]
>UniRef100_C5LSN8 P35 antigen, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC
           50983 RepID=C5LSN8_9ALVE
          Length = 170

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 56/161 (34%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAFSPAYTGPGGF 205
           SPA   +   Y+P          A+    +PT  AYSP   A +P   A+SP  T P  +
Sbjct: 5   SPAYSPTSPAYSPTSPAYSPTSPAY----SPTSPAYSPTSPAYSPTSPAYSP--TSPA-Y 57

Query: 206 SPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
           SP + A +  SP  S    A   T    +P  SP    +P  SP SP Y+  SP +    
Sbjct: 58  SPTSPAYSPTSPAYSPTSPAYSPT----SPAYSPT---SPAYSPTSPAYSPTSPSY---- 106

Query: 383 GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +  + AY+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 107 ----SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 141

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 47/126 (37%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
 Frame = +2

Query: 134 YSPAR-ARTPGGTAFSPAYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPA 307
           YSP   A +P   A+SP  T P  +SP + A +  SP  S    A   T    +P  SP 
Sbjct: 1   YSPTSPAYSPTSPAYSP--TSPA-YSPTSPAYSPTSPAYSPTSPAYSPT----SPAYSPT 53

Query: 308 GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487
              +P  SP SP Y+  SP               AY+P SPAY  TSP   YSP++PA +
Sbjct: 54  ---SPAYSPTSPAYSPTSP---------------AYSPTSPAYSPTSP--AYSPTSPAYS 93

Query: 488 VSSPGY 505
            +SP Y
Sbjct: 94  PTSPAY 99

[135][TOP]
>UniRef100_Q6CL79 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
            RepID=Q6CL79_KLULA
          Length = 1720

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
 Frame = +2

Query: 41   MPESERGYTPGREGQRTP-----GRA-FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGG 202
            MPE +   T G+EG  TP     G A  +  +     +SP    + G  A +  +T  GG
Sbjct: 1455 MPEHKEVKTEGQEGGATPYSNESGLANAEINVKDELMFSPL-VESGGADALAGGFTAYGG 1513

Query: 203  FSPINATASFSPIMSSADAAGR---ATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
                +AT+ FS   +   + G    ++PG    +PG SP    +P  SP SP Y+  SP 
Sbjct: 1514 ADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPGYSPT---SPSYSPTSPSYSPTSPS 1570

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1571 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1606

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP    +  GY+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1540 SPGFSPTSPGYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1595

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1596 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1654

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1655 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1690

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
 Frame = +2

Query: 32   SPAMPE-SERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY-- 187
            SP   E S  G++P   G      ++    +P+Y+     YSP    +P  +  SP+Y  
Sbjct: 1532 SPGFGEVSSPGFSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSP 1587

Query: 188  TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
            T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP
Sbjct: 1588 TSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646

Query: 365  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1647 SY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1683

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
 Frame = +2

Query: 95   GRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAG 265
            G  + +A +P   Y         G   SP +  T PG +SP + + S  SP  S    + 
Sbjct: 1513 GADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPG-YSPTSPSYSPTSPSYSPTSPSY 1571

Query: 266  RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445
              T    +P        +P  SP SP Y+  SP +        +  + +Y+P SP+Y  T
Sbjct: 1572 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPT 1623

Query: 446  SPGMGYSPSTPALAVSSPGY 505
            SP   YSP++P+ + +SP Y
Sbjct: 1624 SPS--YSPTSPSYSPTSPSY 1641

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
 Frame = +2

Query: 80   GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSS 250
            G  +PG  F    +P   +SP    +PG +  SP+Y  T P  +SP + + S  SP  S 
Sbjct: 1529 GPTSPG--FGEVSSP--GFSPT---SPGYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSP 1580

Query: 251  ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
               +   T    +P        +P  SP SP Y+  SP +        +  + +Y+P SP
Sbjct: 1581 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSP 1632

Query: 431  AYMATSPGMGYSPSTPALAVSSPGY 505
            +Y  TSP   YSP++P+ + +SP Y
Sbjct: 1633 SYSPTSPS--YSPTSPSYSPTSPSY 1655

[136][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
            albo-atrum VaMs.102 RepID=C9SR21_9PEZI
          Length = 1756

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
 Frame = +2

Query: 5    AAASARIARSPAMPESE----RGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA 172
            A A++    SP  P S      GY+P      +PG  +    +PT       AR      
Sbjct: 1556 AGATSPFTTSPTSPFSSFAGAGGYSP-----TSPGGGY----SPTSPLMDGGARYATSPQ 1606

Query: 173  FSPAYTGPGGFSPIN-----ATASFSPIMSSADAAGRATPGRMTPGRSPA---GRFTPRM 328
            FSP+       SP++     A+ ++SP   S       +P   +P  SPA      +P  
Sbjct: 1607 FSPSSPSFSPTSPVHRPTSPASPNYSPTSPSYSPTSPTSPRHYSP-TSPAQFNSPTSPSY 1665

Query: 329  SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA 481
            SPASP Y+  SP   G    GP   + +Y+PASP++  TSP   YSP++P+
Sbjct: 1666 SPASPSYSPTSPNLHGA---GPT--SPSYSPASPSWSPTSPEHSYSPTSPS 1711

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 4/154 (2%)
 Frame = +2

Query: 50   SERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229
            +E G T G  G  +PGRA     T  +  SP        + FS ++ G GG+SP +    
Sbjct: 1539 TEYGGTYGGFGGASPGRA---GATSPFTTSPT-------SPFS-SFAGAGGYSPTSPGGG 1587

Query: 230  FSPIMSSADAAGR-ATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
            +SP     D   R AT  + +P     SP        SPASP Y+  SP +       P 
Sbjct: 1588 YSPTSPLMDGGARYATSPQFSPSSPSFSPTSPVHRPTSPASPNYSPTSPSYSPTSPTSPR 1647

Query: 398  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
                 Y+P SPA   +     YSP++P+ + +SP
Sbjct: 1648 H----YSPTSPAQFNSPTSPSYSPASPSYSPTSP 1677

[137][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9WN64_CANDC
          Length = 1735

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
 Frame = +2

Query: 167  TAFSPAYTGPG-GFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340
            TA SP Y  PG G+SP + + S  SP  S    +   T    +P        +P  SP S
Sbjct: 1530 TATSPGYASPGYGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1589

Query: 341  PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P Y+  SP +        +  + +Y+P SP+Y  TSP  GYSP++P+ + +SP Y
Sbjct: 1590 PSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--GYSPTSPSYSPTSPSY 1641

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +PG +  SP+Y  T
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPGYSPTSPSYSPT 1637

Query: 191  GPGGFSPINATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP   + S+SP   S +  + + +P   +P  SP    +P+ SP SP Y+  SP+
Sbjct: 1638 SPS-YSP--TSPSYSPTSPSYSPTSPQYSP--TSPSYSPT---SPQYSPTSPSYSPTSPQ 1689

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP Y  TSP   YSP++P  +  SPGY
Sbjct: 1690 Y--------SPTSPSYSPTSPQYSPTSPQ--YSPTSPRYSPGSPGY 1725

[138][TOP]
>UniRef100_Q692G0 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes
           RepID=Q692G0_NEPCL
          Length = 313

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 57/194 (29%), Positives = 79/194 (40%), Gaps = 28/194 (14%)
 Frame = +2

Query: 5   AAASARIARSPAM----PESERGYTPGREGQRTPGRAFDAA---MTPTYAYSPARARTPG 163
           AAA+A  A  P       +   GY PG++G    G A  AA         Y P + + PG
Sbjct: 2   AAAAAAAAAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAGPGQQGLGGYGPGQ-QGPG 60

Query: 164 GTAFSPAYTGPGGFSPINATAS-------------FSPIM-------SSADAAGRATPGR 283
           G  + P   GPGG+ P +A+A+             + P         S++ AA  A PG 
Sbjct: 61  G--YGPGQQGPGGYGPGSASAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAGPGG 118

Query: 284 MTPGRSPAGRFTP-RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 460
             PG+   G + P +  P+ PG AA +     G GG      G   P   A  A++   G
Sbjct: 119 YGPGQQGPGGYAPGQQGPSGPGSAAAAAAAAAGPGGYGPAQQGPSGPGIAASAASAGPGG 178

Query: 461 YSPSTPALAVSSPG 502
           Y P+    A   PG
Sbjct: 179 YGPAQQGPAGYGPG 192

[139][TOP]
>UniRef100_Q8WSZ3 Dragline silk protein spidroin 2 (Fragment) n=1 Tax=Nephila clavata
           RepID=Q8WSZ3_NEPCV
          Length = 301

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 52/152 (34%), Positives = 63/152 (41%), Gaps = 6/152 (3%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARART--PGGTAFSPAYTGPGGFSPINATASF 232
           GY P   G   PG A  AA      Y P + R   PGG A + A  GPGG+ P     S 
Sbjct: 122 GYGPS--GLSGPGGAAAAAAAGPGGYGPGQQRPSGPGGAAAAAAAAGPGGYGPSQRGPS- 178

Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
            P  ++A AAG A PG   PG+           P+ PG AA +   G G  G    G   
Sbjct: 179 GPGSAAAAAAG-AGPGGYGPGQK---------GPSGPGSAAAAAAAGPGGYGPSQQGPAR 228

Query: 413 YAPASPAYMATSPG----MGYSPSTPALAVSS 496
           Y P+ P   A +       GY P   A A +S
Sbjct: 229 YGPSGPGSAAAAAAGAGTAGYGPGPQASAAAS 260

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 54/193 (27%), Positives = 70/193 (36%), Gaps = 28/193 (14%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREG--QRTPGRAFDAAMTPTYAYSP-------ARART 157
           A+A+A  A  P       GY PG++G  Q+ PG+   A   P+    P       A A  
Sbjct: 46  ASAAAAAAAGPG------GYGPGQQGPGQQGPGQQGPAGYGPSGPSGPGGAAAAAAAAAG 99

Query: 158 PGGTAFS--------PAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG------ 295
           PGG            P   GP G+ P   +       ++A   G   PG+  P       
Sbjct: 100 PGGYGLGQQGPGQQGPGQQGPAGYGPSGLSGPGGAAAAAAAGPGGYGPGQQRPSGPGGAA 159

Query: 296 -----RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 460
                  P G    +  P+ PG AA +   G G GG   G  G   P S A  A +   G
Sbjct: 160 AAAAAAGPGGYGPSQRGPSGPGSAAAAAA-GAGPGGYGPGQKGPSGPGSAAAAAAAGPGG 218

Query: 461 YSPSTPALAVSSP 499
           Y PS    A   P
Sbjct: 219 YGPSQQGPARYGP 231

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 46/129 (35%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPT---YAYSPARARTPGGTAFSPAYTGPGGFSPINATAS 229
           GY PG++    PG A  AA       Y  S      PG  A + A  GPGG+ P     S
Sbjct: 144 GYGPGQQRPSGPGGAAAAAAAAGPGGYGPSQRGPSGPGSAAAAAAGAGPGGYGPGQKGPS 203

Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG--GLGGGPAGG 403
                 SA AA  A PG    G  P+ +   R  P+ PG AA +    G  G G GP   
Sbjct: 204 GP---GSAAAAAAAGPG----GYGPSQQGPARYGPSGPGSAAAAAAGAGTAGYGPGPQAS 256

Query: 404 AGAYAPASP 430
           A A   ASP
Sbjct: 257 AAASRLASP 265

[140][TOP]
>UniRef100_B4R347 RNA polymerase II 215kD subunit n=1 Tax=Drosophila simulans
           RepID=B4R347_DROSI
          Length = 552

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 54/169 (31%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
           G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 162 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 213

Query: 230 FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
           +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 214 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 261

Query: 410 AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505
            Y+P+SP Y  TSP                   GYSPS+   + +SPGY
Sbjct: 262 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGY 310

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 52/162 (32%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAA--MTPTYAYSPARAR-TPGGTAFSPAYTGPGG 202
           SP  P    GY+P  + Q +P  A   +   +P  AYSP+ +  +P   ++SP  T P  
Sbjct: 304 SPTSP----GYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSP--TSPS- 356

Query: 203 FSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
           +SP + + S  SP  S    +   T    TP        TP  SP SP Y+A SP++   
Sbjct: 357 YSPSSPSYSPTSPCYSPTSPSYSPTSPNYTP-------VTPSYSPTSPNYSA-SPQYSPA 408

Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                  G   Y+P SP Y   SP    SP +P     SP Y
Sbjct: 409 SPAYSQTGV-KYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 449

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 54/185 (29%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART-----PGGT 169
           A+ S   + SP  P        G     +P     +  +P YA SP  A T     P  T
Sbjct: 236 ASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYA-SPRYASTTPNFNPQST 294

Query: 170 AFSPAYTGPGGFSP-INATASFSPIMSSADAAGRA-TPGRM-----------TPGRSPAG 310
            +SP+ +G    SP  + TA F    S A +     +PG             +P  SP  
Sbjct: 295 GYSPSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPT- 353

Query: 311 RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
             +P  SP+SP Y+  SP                Y+P SP+Y  TSP   Y+P TP+ + 
Sbjct: 354 --SPSYSPSSPSYSPTSP---------------CYSPTSPSYSPTSP--NYTPVTPSYSP 394

Query: 491 SSPGY 505
           +SP Y
Sbjct: 395 TSPNY 399

[141][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4IK28_DROSE
          Length = 1887

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 54/169 (31%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TSP                   GYSPS+   + +SPGY
Sbjct: 1597 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGY 1645

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 52/162 (32%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAA--MTPTYAYSPARAR-TPGGTAFSPAYTGPGG 202
            SP  P    GY+P  + Q +P  A   +   +P  AYSP+ +  +P   ++SP  T P  
Sbjct: 1639 SPTSP----GYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSP--TSPS- 1691

Query: 203  FSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            +SP + + S  SP  S    +   T    TP        TP  SP SP Y+A SP++   
Sbjct: 1692 YSPSSPSYSPTSPCYSPTSPSYSPTSPNYTP-------VTPSYSPTSPNYSA-SPQYSPA 1743

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   G   Y+P SP Y   SP    SP +P     SP Y
Sbjct: 1744 SPAYSQTGV-KYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1784

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 54/185 (29%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARART-----PGGT 169
            A+ S   + SP  P        G     +P     +  +P YA SP  A T     P  T
Sbjct: 1571 ASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYA-SPRYASTTPNFNPQST 1629

Query: 170  AFSPAYTGPGGFSP-INATASFSPIMSSADAAGRA-TPGRM-----------TPGRSPAG 310
             +SP+ +G    SP  + TA F    S A +     +PG             +P  SP  
Sbjct: 1630 GYSPSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPT- 1688

Query: 311  RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 490
              +P  SP+SP Y+  SP                Y+P SP+Y  TSP   Y+P TP+ + 
Sbjct: 1689 --SPSYSPSSPSYSPTSP---------------CYSPTSPSYSPTSP--NYTPVTPSYSP 1729

Query: 491  SSPGY 505
            +SP Y
Sbjct: 1730 TSPNY 1734

[142][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5ACI7_CANAL
          Length = 1728

 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
 Frame = +2

Query: 35   PAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFS 208
            P  P +   ++ G     +PG       +P Y YSP    +P  +  SP+Y  T P  +S
Sbjct: 1515 PTSPAATSPFSYGYNSITSPGYT-----SPGYGYSPT---SPSYSPTSPSYAPTSPA-YS 1565

Query: 209  PINAT-ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            P + + A  SP  S    +   T    +P  SP    +P  SP SP Y+  SP++     
Sbjct: 1566 PTSPSYAPTSPAYSPTSPSYAPT----SPAYSPT---SPAYSPTSPSYSPTSPQY----- 1613

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
               +  + +Y+P SP+Y  TSP   YSP++PA + +SP Y
Sbjct: 1614 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPSY 1648

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 4/153 (2%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFD----AAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA 226
            G TP ++ +       D    A  +P +          G T++    T P   SP     
Sbjct: 1469 GATPYKDYENARDENIDIDAGAGFSPIHIAQMNEGNIGGLTSYGGQPTSPAATSP----- 1523

Query: 227  SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
             FS   +S  + G  +PG    G SP    +P  SP SP YA  SP +        +  +
Sbjct: 1524 -FSYGYNSITSPGYTSPGY---GYSPT---SPSYSPTSPSYAPTSPAY--------SPTS 1568

Query: 407  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             +YAP SPAY  TSP   Y+P++PA + +SP Y
Sbjct: 1569 PSYAPTSPAYSPTSP--SYAPTSPAYSPTSPAY 1599

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SPA   +   Y P          A+    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1575 SPAYSPTSPSYAPTSPAYSPTSPAYSPT-SPSYSPTSPQYSPT---SPSYSPTSPSYSPT 1630

Query: 191  GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + A +  SP  S    +   T  + +P        +P+ SP SP Y+  SP+
Sbjct: 1631 SPS-YSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQ 1689

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                           Y+P SP Y  TSP   YSP++P  +  SPGY
Sbjct: 1690 ---------------YSPTSPQYSPTSP--QYSPTSPQYSPGSPGY 1718

[143][TOP]
>UniRef100_Q4UCP5 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
            RepID=Q4UCP5_THEAN
          Length = 1678

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
 Frame = +2

Query: 116  MTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG 295
            M+PT   SP  A +P    +SPAY+     SP + T++ SP       A   T       
Sbjct: 1555 MSPTSPMSPTSAISP---VYSPAYSPTSPMSPTSPTSALSPTSPVYSPAYSPT------- 1604

Query: 296  RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP----AYMATSPGMGY 463
             SP    +P     SP Y+  SP  G             YAP SP    AY  T+P  GY
Sbjct: 1605 -SPTSAMSPTSPVYSPAYSPTSPNLG-------------YAPTSPVYSPAYSPTTPNYGY 1650

Query: 464  SPSTPALAVSSPGY 505
            SP++P L+ +SP Y
Sbjct: 1651 SPTSP-LSPTSPAY 1663

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 31/160 (19%)
 Frame = +2

Query: 119  TPTYAYSPARARTPGGTAFSPAYT------------GP-------------GGFSPINAT 223
            +P    +PA  +T    AFSP YT            GP             G FSP + T
Sbjct: 1487 SPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPT 1546

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP--GYAAMSPRFGGGLGGGPA 397
            +  SP    +  +  +    ++P  SPA   T  MSP SP    +  SP +       P 
Sbjct: 1547 SPMSPTSPMSPTSPMSPTSAISPVYSPAYSPTSPMSPTSPTSALSPTSPVYSPAY--SPT 1604

Query: 398  GGAGAYAPA----SPAYMATSPGMGYSPSTPALAVSSPGY 505
                A +P     SPAY  TSP +GY+P++P   V SP Y
Sbjct: 1605 SPTSAMSPTSPVYSPAYSPTSPNLGYAPTSP---VYSPAY 1641

[144][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5E6J4_LODEL
          Length = 1745

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS- 229
            G TPG  G  +PG       +P Y YSP    +P  +  SP+Y  T P  +SP + + S 
Sbjct: 1519 GTTPGYGGT-SPGYG---GTSPGYGYSPT---SPSYSPTSPSYSPTSPS-YSPTSPSYSP 1570

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
             SP  S    +   T    +P        +P  SP SP Y+  SP +        +  + 
Sbjct: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSP 1622

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1623 SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1652

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 5/161 (3%)
 Frame = +2

Query: 38   AMPESERGYTPGREGQRT-PGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG-GF 205
            AM ++  G      GQ T PG       T  ++Y      TPG    SP Y  T PG G+
Sbjct: 1491 AMSDNMNGGLTSYGGQPTSPGN------TSPFSYGT----TPGYGGTSPGYGGTSPGYGY 1540

Query: 206  SPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP +    
Sbjct: 1541 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---- 1596

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1597 ----SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1631

[145][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179348F
          Length = 1862

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
 Frame = +2

Query: 53   ERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG--GTAFSPAYTGPGGFSPINATA 226
            E G TPG  G    G +  +  +P +  S     +PG  G A SP    P   SP N   
Sbjct: 1528 ETGMTPGGPGFSPAGSSEASGTSPFWMSSGGTPGSPGSPGMATSPYVPSPSSMSP-NYNY 1586

Query: 227  SFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
              SP   S   +   T    T P  S   + TP+ S  SP Y   SP         P+  
Sbjct: 1587 PSSPQFGSLSPSMTPTNYSPTSPQYSATQQNTPKYSSMSPNY-NYSPTSPSYSPTSPSYS 1645

Query: 404  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1646 HTSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1677

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 55/162 (33%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
 Frame = +2

Query: 65   TPGREGQRTPGRAFDAAMTPTY----AYSPARARTPGGTAFSPAYTGPGGFSPINATASF 232
            TP      TP   +D   TP Y    + S     TPGG  FSPA     G S  + T+ F
Sbjct: 1501 TPSMSPAMTP---WDQTSTPMYQNNWSSSLETGMTPGGPGFSPA-----GSSEASGTSPF 1552

Query: 233  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA-AMSPRFGGGLGGGPAGGAG 409
               MSS    G  +PG      SP   + P  S  SP Y    SP+FG      P+    
Sbjct: 1553 W--MSSGGTPG--SPGSPGMATSP---YVPSPSSMSPNYNYPSSPQFGSL---SPSMTPT 1602

Query: 410  AYAPASPAYMAT----------SPGMGYSPSTPALAVSSPGY 505
             Y+P SP Y AT          SP   YSP++P+ + +SP Y
Sbjct: 1603 NYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSY 1644

[146][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BD271
          Length = 1749

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP  P S    +P   G  +PG       +PTY+     YSP    +P  +  SP+Y  T
Sbjct: 1529 SPTSPFSYGATSPSFGGVTSPGYG---GTSPTYSPTSPSYSPT---SPSYSPTSPSYSPT 1582

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1583 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1641

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1642 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1677

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 3/145 (2%)
 Frame = +2

Query: 80   GQRTPGRAFDAAMTP--TYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSA 253
            G  T   A D   TP   Y     + +   G  FSP +T P                  +
Sbjct: 1471 GNETGEYADDGGATPYRDYEMQDDKIQFEEGAGFSPIHTAP-----------------VS 1513

Query: 254  DAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
            D +G  T        S  G  +P  SP SP  Y A SP FGG    G  G +  Y+P SP
Sbjct: 1514 DGSGALT--------SYGGATSP--SPTSPFSYGATSPSFGGVTSPGYGGTSPTYSPTSP 1563

Query: 431  AYMATSPGMGYSPSTPALAVSSPGY 505
            +Y  TSP   YSP++P+ + +SP Y
Sbjct: 1564 SYSPTSP--SYSPTSPSYSPTSPSY 1586

[147][TOP]
>UniRef100_A8ITU3 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii
            RepID=A8ITU3_CHLRE
          Length = 1063

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 55/148 (37%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
 Frame = +2

Query: 71   GREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSS 250
            G  G   P  AF A      A +PA   TP   A +PA TG  GF    A AS      +
Sbjct: 833  GSSGGAAPTAAFGATGAAGAAPTPAFGVTPAFGAGAPAATG--GFGGFGAGAS----KPA 886

Query: 251  ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY---AAMSPRFGGGLGGGPAGGAGAYAP 421
            A   G A P   T G +PA        PA+ G+   AA +P FG G G  PA GA  +  
Sbjct: 887  APTFGAAGP---TFGAAPA--------PAAGGFGAPAAPTPAFGSGGGAAPAFGASGFGA 935

Query: 422  ASPAYMATSPGMGYSPSTPALAVSSPGY 505
            A PA  A +PG G   ST     SSP +
Sbjct: 936  AQPA--APTPGFGAGASTGFGGTSSPAF 961

[148][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
            RepID=Q9XZU9_DROSU
          Length = 1889

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 10/177 (5%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYAYSPARARTPGGT 169
            AA S R A + P       GY+P   G       +        +P++A S +   +PG  
Sbjct: 1613 AAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGN- 1671

Query: 170  AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
            A+SP+ T     SP  + +  SP  S +  +   T    +P        +P  +PA+P Y
Sbjct: 1672 AYSPSSTNYSPNSP--SYSPTSPSYSPSSPSYSPTSPCYSPSSPSYSPTSPNYTPATPSY 1729

Query: 350  AAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +       PA  A       Y+P SP Y   SP    SP +P     SP Y
Sbjct: 1730 SPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 52/157 (33%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   F P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---FYPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATS-----PGMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TS     P   Y+ +TP     S GY
Sbjct: 1597 NYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGY 1633

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
            SP+   +   Y+P           +  A TP+Y+  SP  + +P  +  SPAY+  G  +
Sbjct: 1698 SPSYSPTSPCYSPSSPSYSPTSPNYTPA-TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756

Query: 206  SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + T S  SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+     
Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
               P G    Y+  SP Y   SP M  YSPS+   + +SP Y
Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848

[149][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
            RepID=Q9XZS2_DROMD
          Length = 1889

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 10/177 (5%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYAYSPARARTPGGT 169
            AA S R A + P       GY+P   G       +        +P++A S +   +PG  
Sbjct: 1613 AAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGN- 1671

Query: 170  AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
            A+SP+ T     SP  + +  SP  S +  +   T    +P        +P  +PA+P Y
Sbjct: 1672 AYSPSSTNYSPNSP--SYSPTSPSYSPSSPSYSPTSPCYSPSSPSYSPTSPNYTPATPSY 1729

Query: 350  AAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +       PA  A       Y+P SP Y   SP    SP +P     SP Y
Sbjct: 1730 SPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 52/157 (33%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   F P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---FYPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATS-----PGMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TS     P   Y+ +TP     S GY
Sbjct: 1597 NYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGY 1633

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
            SP+   +   Y+P           +  A TP+Y+  SP  + +P  +  SPAY+  G  +
Sbjct: 1698 SPSYSPTSPCYSPSSPSYSPTSPNYTPA-TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756

Query: 206  SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + T S  SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+     
Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
               P G    Y+  SP Y   SP M  YSPS+   + +SP Y
Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848

[150][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
            RepID=Q9XZS1_DROGU
          Length = 1889

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
            AA S R A + P       GY+P   G       +        +P++A      YSP  A
Sbjct: 1613 AAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNA 1672

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
             +P  T +SP       +SP   + S+SP   S+ +    +P     +P  SP    +P 
Sbjct: 1673 YSPSSTNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGA-----GAYAPASPAYMATSPGMGYSPSTPALAV 490
             +PA+P Y+  SP +       PA  A       Y+P SP Y   SP    SP +P    
Sbjct: 1722 YTPATPSYSPTSPNYSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781

Query: 491  SSPGY 505
             SP Y
Sbjct: 1782 GSPQY 1786

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 51/157 (32%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPAPSMSP---YYPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATS-----PGMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TS     P   Y+ +TP     S GY
Sbjct: 1597 NYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGY 1633

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG-F 205
            SP+   +   YTP                TP+Y+  SP  + +P  +  SPAY+  G  +
Sbjct: 1712 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGAKY 1756

Query: 206  SPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 382
            SP + T S  SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+     
Sbjct: 1757 SPTSPTYSPPSPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSN 1811

Query: 383  GGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
               P G    Y+  SP Y   SP M  YSPS+   + +SP Y
Sbjct: 1812 QYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848

[151][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
            RepID=B5RSM9_DEBHA
          Length = 1749

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP  P S    +P   G  +PG       +PTY+     YSP    +P  +  SP+Y  T
Sbjct: 1529 SPTSPFSYGATSPSFGGVTSPGYG---GTSPTYSPTSPSYSPT---SPSYSPTSPSYSPT 1582

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1583 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1641

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1642 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1677

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 3/145 (2%)
 Frame = +2

Query: 80   GQRTPGRAFDAAMTP--TYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSA 253
            G  T   A D   TP   Y     + +   G  FSP +T P                  +
Sbjct: 1471 GNETGEYADDGGATPYRDYEMQDDKIQFEEGAGFSPIHTAP-----------------VS 1513

Query: 254  DAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
            D +G  T        S  G  +P  SP SP  Y A SP FGG    G  G +  Y+P SP
Sbjct: 1514 DGSGALT--------SYGGATSP--SPTSPFSYGATSPSFGGVTSPGYGGTSPTYSPTSP 1563

Query: 431  AYMATSPGMGYSPSTPALAVSSPGY 505
            +Y  TSP   YSP++P+ + +SP Y
Sbjct: 1564 SYSPTSP--SYSPTSPSYSPTSPSY 1586

[152][TOP]
>UniRef100_Q16988 Fibroin-4 (Fragment) n=1 Tax=Araneus diadematus RepID=Q16988_ARADI
          Length = 410

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 54/180 (30%), Positives = 67/180 (37%), Gaps = 15/180 (8%)
 Frame = +2

Query: 11  ASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA------ 172
           ASA  A + A      GY PG +G   PG         + A + A A  PGG        
Sbjct: 118 ASAAAAAAAAAASGPGGYGPGSQGPSGPGAYGPGGPGSSAAAAAAAASGPGGYGPGSQGP 177

Query: 173 FSPAYTGPGG---FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
             P   GPGG    +   A A   P     +  G + PG   PG S +       + + P
Sbjct: 178 SGPGVYGPGGPGSSAAAAAAAGSGPGGYGPENQGPSGPGGYGPGGSGSSAAAAAAAASGP 237

Query: 344 G------YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           G           P   GG G G  GG+G  A A+ A  A S   GY P +     S PGY
Sbjct: 238 GGYGPGSQGPSGPGGSGGYGPGSQGGSGPGASAAAAAAAASGPGGYGPGSQ--GPSGPGY 295

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 49/170 (28%), Positives = 69/170 (40%), Gaps = 10/170 (5%)
 Frame = +2

Query: 26  ARSPAMPESERGYTPGREGQRTPG--------RAFDAAMTPTYAYSPARARTPGGTAFSP 181
           ++ P+ P    GY PG +G   PG         A  AA +    Y P      G  A+ P
Sbjct: 91  SQGPSGPGGSGGYGPGSQGASGPGGPGASAAAAAAAAAASGPGGYGPGSQGPSGPGAYGP 150

Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
              GPG  +   A A+  P      + G + PG   PG   +       + + PG     
Sbjct: 151 G--GPGSSAAAAAAAASGPGGYGPGSQGPSGPGVYGPGGPGSSAAAAAAAGSGPGGYGPE 208

Query: 362 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST--PALAVSSPGY 505
            +   G GG   GG+G+ A A+ A  A+ PG GY P +  P+    S GY
Sbjct: 209 NQGPSGPGGYGPGGSGSSAAAAAA-AASGPG-GYGPGSQGPSGPGGSGGY 256

[153][TOP]
>UniRef100_O94231 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kluyveromyces
           lactis RepID=O94231_KLULA
          Length = 414

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
 Frame = +2

Query: 44  PESERGYTPGREGQRTP-----GRA-FDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGF 205
           PE +   T G+EG  TP     G A  +  +     +SP    + G  A +  +T  GG 
Sbjct: 150 PEHKEVKTEGQEGGATPYSNESGLANAEINVKDELMFSPL-VESGGADALAGGFTAYGGA 208

Query: 206 SPINATASFSPIMSSADAAGR---ATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
              +AT+ FS   +   + G    ++PG    +PG SP    +P  SP SP Y+  SP +
Sbjct: 209 DYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPGYSPT---SPSYSPTSPSYSPTSPSY 265

Query: 371 GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 266 --------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 300

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
           SP    +  GY+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 234 SPGFSPTSPGYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 289

Query: 191 GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
            P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 290 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 348

Query: 368 FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 349 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 384

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
 Frame = +2

Query: 32  SPAMPE-SERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY-- 187
           SP   E S  G++P   G      ++    +P+Y+     YSP    +P  +  SP+Y  
Sbjct: 226 SPGFGEVSSPGFSPTSPGYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSP 281

Query: 188 TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
           T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP
Sbjct: 282 TSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 340

Query: 365 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 341 SY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 377

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
 Frame = +2

Query: 95  GRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAG 265
           G  + +A +P   Y         G   SP +  T PG +SP + + S  SP  S    + 
Sbjct: 207 GADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPTSPG-YSPTSPSYSPTSPSYSPTSPSY 265

Query: 266 RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445
             T    +P        +P  SP SP Y+  SP +        +  + +Y+P SP+Y  T
Sbjct: 266 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPT 317

Query: 446 SPGMGYSPSTPALAVSSPGY 505
           SP   YSP++P+ + +SP Y
Sbjct: 318 SPS--YSPTSPSYSPTSPSY 335

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
 Frame = +2

Query: 80  GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSS 250
           G  +PG  F    +P   +SP    +PG +  SP+Y  T P  +SP + + S  SP  S 
Sbjct: 223 GPTSPG--FGEVSSP--GFSPT---SPGYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSP 274

Query: 251 ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
              +   T    +P        +P  SP SP Y+  SP +        +  + +Y+P SP
Sbjct: 275 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSP 326

Query: 431 AYMATSPGMGYSPSTPALAVSSPGY 505
           +Y  TSP   YSP++P+ + +SP Y
Sbjct: 327 SYSPTSPS--YSPTSPSYSPTSPSY 349

[154][TOP]
>UniRef100_Q692F8 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes
           RepID=Q692F8_NEPCL
          Length = 296

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 52/176 (29%), Positives = 71/176 (40%), Gaps = 28/176 (15%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAYTGPGGFSPINAT 223
           GY PG++G    G A  AA           Y P + + PGG  + P   GPGG+ P +A+
Sbjct: 3   GYGPGQQGPSGAGSAAAAAAAGPGQQGLGGYGPGQ-QGPGG--YGPGQQGPGGYGPGSAS 59

Query: 224 AS-------------FSP---------IMSSADAAGRATPGRMTPGRSPAGRFTP-RMSP 334
           A+             + P           S+A AA  A PG   PG+   G + P +  P
Sbjct: 60  AAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAAGPGGYGPGQQGPGGYAPGQQGP 119

Query: 335 ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
           + PG AA +     G GG      G   P   A  A++   GY P+    A   PG
Sbjct: 120 SGPGSAAAAAAAAAGPGGYGPAQQGPSGPGIAASAASAGPGGYGPAQQGPAGYGPG 175

[155][TOP]
>UniRef100_Q4N0F9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
            RepID=Q4N0F9_THEPA
          Length = 1681

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 49/136 (36%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
 Frame = +2

Query: 116  MTPTYAYSPARARTPGGTAFSPAY--TGP-GGFSPINATASFSPIMSSADAAGRATPGRM 286
            M+PT   SP    +     +SPAY  T P    SP NA +  SP+ S A      +P   
Sbjct: 1555 MSPTSPMSPMSPTSAMSPVYSPAYSPTSPMSPTSPANALSPTSPVYSPA-----YSPTSP 1609

Query: 287  TPGRSPAGR-FTPRMSPASP--GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 457
            T   SP    ++P  SP SP  GYA  SP +                  SPAY  TSP  
Sbjct: 1610 TSAMSPTSPVYSPAYSPTSPNLGYAPTSPVY------------------SPAYSPTSPNY 1651

Query: 458  GYSPSTPALAVSSPGY 505
            GYSP++P L+ +SP Y
Sbjct: 1652 GYSPTSP-LSPTSPAY 1666

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 54/163 (33%), Positives = 67/163 (41%), Gaps = 34/163 (20%)
 Frame = +2

Query: 119  TPTYAYSPARARTPGGTAFSPAYT------------GP-------------GGFSPINAT 223
            +P    +PA  +T    AFSP YT            GP             G FSP + T
Sbjct: 1487 SPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPT 1546

Query: 224  ASFSPI--MSSADAAGRATP-GRMTPGRSPAGRFTPRMSPASPGYAAM--SPRFGGGLGG 388
            +  SP   MS        +P   M+P  SPA   T  MSP SP  A    SP +      
Sbjct: 1547 SPMSPTSPMSPTSPMSPMSPTSAMSPVYSPAYSPTSPMSPTSPANALSPTSPVYSPAYS- 1605

Query: 389  GPAGGAGAYAPASP----AYMATSPGMGYSPSTPALAVSSPGY 505
             P     A +P SP    AY  TSP +GY+P++P   V SP Y
Sbjct: 1606 -PTSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSP---VYSPAY 1644

[156][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179338A
          Length = 1862

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
 Frame = +2

Query: 65   TPGREGQRTPGRAFDAAMTPTYAYSPARA----RTPGGTAFSPAYTGPG-GFSPINATAS 229
            TP      TP   +D   TP Y  S + +     TPGG  FSPA +    G SP   T+ 
Sbjct: 1501 TPSMSPAMTP---WDQTSTPVYQNSWSSSLEAGMTPGGPGFSPAGSSEASGTSPFWMTSG 1557

Query: 230  FSPIMSSADAAGRAT------PGRMTPG----RSPA-GRFTPRMSPASPGYAAMSPRFGG 376
             +P   S  + G AT      P  M+P      SP  G  +P M+P +  Y+  SP++  
Sbjct: 1558 GTP--GSPGSPGMATSPYVPSPNSMSPNYNYPSSPQFGSMSPSMTPTN--YSPTSPQYSA 1613

Query: 377  GLGGGPAGGAGA----YAPASPAYMATSPG---MGYSPSTPALAVSSPGY 505
                 P   + +    Y+P SP+Y  TSP      YSP++P+ + +SP Y
Sbjct: 1614 TQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPSY 1663

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 12/163 (7%)
 Frame = +2

Query: 53   ERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG--GTAFSPAYTGPGGFSPINATA 226
            E G TPG  G    G +  +  +P +  S     +PG  G A SP    P   SP N   
Sbjct: 1528 EAGMTPGGPGFSPAGSSEASGTSPFWMTSGGTPGSPGSPGMATSPYVPSPNSMSP-NYNY 1586

Query: 227  SFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMS---------PASPGYAAMSPRFGG 376
              SP   S   +   T    T P  S   + TP+ S         P SP Y+  SP +  
Sbjct: 1587 PSSPQFGSMSPSMTPTNYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSH 1646

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                  +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1647 T---SYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1684

[157][TOP]
>UniRef100_Q692F7 Major ampullate spidroin 2 (Fragment) n=1 Tax=Nephila clavipes
           RepID=Q692F7_NEPCL
          Length = 236

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 53/148 (35%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSP 238
           GY PG++G    G A  AA     A  P + + PGG  + P   GPGG+ P     S  P
Sbjct: 12  GYGPGQQGPSGSGSAAAAA-----AAGPGQ-QGPGG--YGPGQQGPGGYGPGQQGPS-GP 62

Query: 239 IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA-GGAGAY 415
             ++A AA  A PG    G  PA     +  P+ PG AA +   G G G GPA  G   Y
Sbjct: 63  GSAAAAAAAAAGPG----GYGPA-----QQGPSGPGIAASAASAGPG-GYGPAQQGPAGY 112

Query: 416 APASPAYMATSPG-MGYSPSTPALAVSS 496
            P S    +   G  GY P + A A +S
Sbjct: 113 GPGSAVAASAGAGSAGYGPGSQASAAAS 140

[158][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NUC1_DROER
          Length = 1889

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 52/185 (28%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAA----MTPTYA------YSPARA 151
            A+AS R A + P       GY+P   G       +        +P++A      YSPA A
Sbjct: 1613 ASASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTPHFQSSPSFAGSGSNIYSPANA 1672

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
             +P    +SP       +SP   + S+SP   S+ +    +P     +P  SP    +P 
Sbjct: 1673 YSPSSANYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490
             +P +P Y+  SP +       PA  A +     Y+P SP Y   SP    SP +P    
Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781

Query: 491  SSPGY 505
             SP Y
Sbjct: 1782 GSPQY 1786

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TSP   Y+ ++P  A ++P +
Sbjct: 1597 NYSPSSPNYSPTSP--LYASASPRYASTTPNF 1626

[159][TOP]
>UniRef100_C5E245 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340
            RepID=C5E245_LACTC
          Length = 1740

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196
            A SP     +   +PG  G  +PG       +PT  AYSP    +P  +  SP+Y  T P
Sbjct: 1520 ASSPFSGYGDAPTSPGFGGVASPG------FSPTSPAYSPT---SPSYSPTSPSYSPTSP 1570

Query: 197  GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
              +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP + 
Sbjct: 1571 S-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1628

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1629 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1663

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SPA   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1548 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1603

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1604 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1662

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1663 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1698

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 37/112 (33%), Positives = 56/112 (50%)
 Frame = +2

Query: 170  AFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
            A S  +T  GG     A++ FS    +  + G    G  +PG SP    +P  SP SP Y
Sbjct: 1504 AMSGGFTAYGGADYGGASSPFSGYGDAPTSPGFG--GVASPGFSPT---SPAYSPTSPSY 1558

Query: 350  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1559 SPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1600

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1569 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1624

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1625 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1683

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ +  SP Y
Sbjct: 1684 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPGSPSY 1719

[160][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YN85_CANAL
          Length = 1742

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
 Frame = +2

Query: 176  SPAYTGPG-GFSPINAT--------ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM 328
            SP YT PG G+SP + +        A  SP  S    +   T    +P        +P  
Sbjct: 1533 SPGYTSPGYGYSPTSPSYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAY 1592

Query: 329  SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            SP SP YA  SP +        +  + AY+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1593 SPTSPSYAPTSPAY--------SPTSPAYSPTSPSYSPTSP--QYSPTSPSYSPTSPSY 1641

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SPA   +   Y P          A+    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1589 SPAYSPTSPSYAPTSPAYSPTSPAYSPT-SPSYSPTSPQYSPT---SPSYSPTSPSYSPT 1644

Query: 191  GPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + A +  SP  S    +   T  + +P        +P+ SP SP Y+  SP+
Sbjct: 1645 SPS-YSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQ 1703

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                           Y+P SP Y  TSP   YSP++P  +  SPGY
Sbjct: 1704 ---------------YSPTSPQYSPTSP--QYSPTSPQYSPGSPGY 1732

[161][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6JYP8_SCHJY
          Length = 1748

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
 Frame = +2

Query: 2    DAAASARIARSPAMPESERGY--TPGREGQRTPG--RAFDAAMTPTYAYSPARARTPGGT 169
            DAA S  I  S    + + G   +P     R+PG    F  A +P ++ S + + +P   
Sbjct: 1502 DAAFSPLIQTSQDTHDDDYGMMASPYGADARSPGYMSPFSGASSPGFSPS-SPSYSPSSP 1560

Query: 170  AFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG 346
            A+SP  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP 
Sbjct: 1561 AYSP--TSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1617

Query: 347  YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            Y+  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1618 YSPTSPSY--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1660

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY- 187
            A SP    S   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y 
Sbjct: 1543 ASSPGFSPSSPSYSPSSPAYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYS 1598

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1599 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1657

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1658 PSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1702

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY- 187
            ARSP       GY     G  +PG +     +P+Y     AYSP    +P  +  SP+Y 
Sbjct: 1531 ARSP-------GYMSPFSGASSPGFS---PSSPSYSPSSPAYSPT---SPSYSPTSPSYS 1577

Query: 188  -TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMS 361
             T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  S
Sbjct: 1578 PTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1636

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1637 PSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1681

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1587 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1642

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1643 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1701

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +  G     A   G  +P SP Y  TSP   YSP++P+ + +SP Y
Sbjct: 1702 YSPGHSAQNA--QGRMSPRSPVYSPTSPS--YSPTSPSYSPTSPRY 1743

[162][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
          Length = 1752

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPG 199
            A SP    +   Y+P   G  T      A M  + +YSP    +P  +  SP+Y  T P 
Sbjct: 1546 AMSPGYGLTSPSYSPSSPGYSTS----PAYMPSSPSYSPT---SPSYSPTSPSYSPTSPS 1598

Query: 200  GFSPINATASF-SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
             +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP +  
Sbjct: 1599 -YSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1655

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                  +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1656 ------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1690

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
 Frame = +2

Query: 11   ASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARART-PGGTAFSPA 184
            +S   + SPA   S   Y+P          ++    +P+Y+  SP+ + T P  +  SP+
Sbjct: 1561 SSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSATSPSYSPTSPS 1619

Query: 185  Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
            Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+ 
Sbjct: 1620 YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678

Query: 356  MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1679 TSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1725

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1644

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1645 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1703

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1704 YSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1746

[163][TOP]
>UniRef100_UPI0000F2E706 PREDICTED: similar to eomesodermin homolog (Xenopus laevis), n=1
           Tax=Monodelphis domestica RepID=UPI0000F2E706
          Length = 499

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 52/176 (29%), Positives = 66/176 (37%), Gaps = 12/176 (6%)
 Frame = +2

Query: 2   DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
           D  +S      P +P+  +G   G E   +   A  AA     A + A AR P  +    
Sbjct: 91  DTFSSGASVAKPGVPDGRKGSPCGDEELPSAAAAAAAAAAAAAAAAAAAARYPMDSLSPD 150

Query: 182 AY----TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPG----RSPAGRFTP----R 325
            Y     GP   + + A  S  P  ++A AA  A  G + P     R P G   P     
Sbjct: 151 RYYLQSPGPPQGAELAAPCSLFPYPAAAAAAAAAQHGSVYPAPNGARYPYGSMLPPGGFS 210

Query: 326 MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS 493
            +  SPG A   P   GG G GP GG G   P    Y  + PG  Y P   A   S
Sbjct: 211 AAVCSPGRAQFGPGGPGGPGSGPGGGGG---PGGYQYAQSGPGALYGPYPGAATAS 263

[164][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila erecta RepID=Q1WKU4_DROER
          Length = 760

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 53/154 (34%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSPAYTGPGGFSPINATASF 232
           G TP      TP   +    TP Y   P    A TPGG +FSP+                
Sbjct: 639 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPS---------------- 679

Query: 233 SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
               +++DA+G      M+P  SPA    P  SP+SPG  +MSP F       P+     
Sbjct: 680 ----AASDASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS----- 720

Query: 413 YAPASPAYMATSPG---MGYSPSTPALAVSSPGY 505
           Y+P SP Y A+SPG     YSPS+P  + +SP Y
Sbjct: 721 YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLY 754

[165][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
            RepID=B4MAN9_DROVI
          Length = 1889

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPA---RARTPGGTAFSP-AYTGPGGFSPINATA 226
            G TP      TP   +    TP Y +SP+      TPGG +FSP A +   G SP     
Sbjct: 1497 GSTPSMTPPMTP---WVNCHTPRY-FSPSGHVSGMTPGGPSFSPSAASDASGMSP----- 1547

Query: 227  SFSPIMSSADAAGRATPG-RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
            S+SP   +   +  ++PG  M+P  S +   +P  SP SP Y A SP           G 
Sbjct: 1548 SWSP---AHPGSSPSSPGPSMSPHFSTSPSVSPSYSPTSPNYTASSP----------GGA 1594

Query: 404  AGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505
            +  Y+P+SP Y  TSP      + Y+ +TP     S GY
Sbjct: 1595 SPNYSPSSPNYSPTSPLYTATSLRYASATPNFNPQSTGY 1633

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 10/176 (5%)
 Frame = +2

Query: 8    AASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYAYSPARARTPGGTA 172
            A S R A + P       GY+P   G       +        +P++A S +   +PG  A
Sbjct: 1614 ATSLRYASATPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGN-A 1672

Query: 173  FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA 352
            +SP+ +     SP  + +  SP  S +  +   T    +P        +P  +PA+P Y+
Sbjct: 1673 YSPSSSNYSSNSP--SYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYS 1730

Query: 353  AMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              SP +       PA  A +     Y+P SP Y   SP    SP +P     SP Y
Sbjct: 1731 PTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 5/163 (3%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPG-GF 205
            SP+   +   YTP                TP+Y+  SP  + +P  +  SPAY+  G  +
Sbjct: 1712 SPSYSPTSPNYTPA---------------TPSYSPTSPNYSASPHYSPASPAYSQTGVKY 1756

Query: 206  SPINATASFSPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            SP + T  +SP   S D +    PG  + TPG       +P+ SP SP Y+  SP+    
Sbjct: 1757 SPTSPT--YSPPSPSYDGS----PGSPQYTPGSPQYSPTSPKYSPTSPLYSPSSPQHSPS 1810

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPGY 505
                P G    Y+  SP Y   SP M  YSPS+   + +SP Y
Sbjct: 1811 NQYSPTG--STYSATSPRY---SPNMSIYSPSSTKYSPTSPTY 1848

[166][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
            RepID=Q6FQS9_CANGA
          Length = 1715

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196
            A SP     +   +PG  G  +PG       +PT  AYSP    +P  +  SP+Y  T P
Sbjct: 1519 ATSPFGAYGDAPASPGFGGVSSPG------FSPTSPAYSPT---SPSYSPTSPSYSPTSP 1569

Query: 197  GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
              +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP + 
Sbjct: 1570 S-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1627

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1628 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1662

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
 Frame = +2

Query: 95   GRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAG 265
            G  +  A +P  AY  A A    G   SP +  T P  +SP + + S  SP  S    + 
Sbjct: 1513 GAEYGGATSPFGAYGDAPASPGFGGVSSPGFSPTSPA-YSPTSPSYSPTSPSYSPTSPSY 1571

Query: 266  RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 445
              T    +P        +P  SP SP Y+  SP +        +  + +Y+P SP+Y  T
Sbjct: 1572 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPT 1623

Query: 446  SPGMGYSPSTPALAVSSPGY 505
            SP   YSP++P+ + +SP Y
Sbjct: 1624 SP--SYSPTSPSYSPTSPSY 1641

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SPA   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1547 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1602

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1603 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1661

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1662 Y--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1697

[167][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
            RepID=UPI0000F24379
          Length = 1739

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--TGPGG 202
            P S    +P   G  +P  +F  +++P Y     +YSP    +P  +  SP+Y  T P  
Sbjct: 1517 PTSPSATSPFSYGSTSP--SFGGSVSPGYGGTSPSYSPT---SPSYSPTSPSYSPTSPS- 1570

Query: 203  FSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            +SP + A +  SP  S    +   T    +P        +P  SP SP Y+  SP +   
Sbjct: 1571 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1627

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1628 -----SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1662

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPA 184
            +A++  +     P      +PG  G          + +PT  +YSP    +P  +  SPA
Sbjct: 1521 SATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPA 1577

Query: 185  Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
            Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+ 
Sbjct: 1578 YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636

Query: 356  MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1637 TSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1683

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
 Frame = +2

Query: 224  ASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
            A FSPI ++   D +G  T        S  G+ T   + +   Y + SP FGG +  G  
Sbjct: 1493 AGFSPIHTAQVQDVSGGLT--------SYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYG 1544

Query: 398  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            G + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1545 GTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAY 1578

[168][TOP]
>UniRef100_Q4G1Y1 Major ampullate spidroin 2 (Fragment) n=1 Tax=Latrodectus hesperus
           RepID=Q4G1Y1_9ARAC
          Length = 542

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 53/180 (29%), Positives = 67/180 (37%), Gaps = 14/180 (7%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           A A+A  A   A P +++ Y PG  G      A        Y    A    PGG   + A
Sbjct: 78  AGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAASGPGPSGYGPGAAGPSGPGGAGAAAA 137

Query: 185 Y-----TGPGGF---------SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTP 322
                 +GPGG+         S       + P  S A AA  A  G   PGR     +  
Sbjct: 138 AAAAGGSGPGGYGQGPSGYGPSGPGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--YGQ 195

Query: 323 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
             S A+   AA  P +GG  G GP GGAGA A A+           Y P     A ++ G
Sbjct: 196 GSSGAAAAAAAGGPGYGGQQGFGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAAAG 254

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 57/181 (31%), Positives = 70/181 (38%), Gaps = 15/181 (8%)
 Frame = +2

Query: 8   AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSP---------ARARTP 160
           AA+A  A  P     ++GY PG  G      A  A      AY P         A A  P
Sbjct: 56  AAAAAAAGGPGYG-GQQGYGPGGAGAAAAAAAGGAGPGTQQAYGPGGSGAAAAAAAASGP 114

Query: 161 GGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPAS 340
           G + + P   GP G     A A+       A AAG + PG    G+ P+G       P+ 
Sbjct: 115 GPSGYGPGAAGPSGPGGAGAAAA-------AAAAGGSGPGGY--GQGPSG-----YGPSG 160

Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG------MGYSPSTPALAVSSPG 502
           PG         G  G GP GG+GA A A+ A     PG       G S +  A A   PG
Sbjct: 161 PG---------GQQGYGP-GGSGAAAAAAAAAGGAGPGRQQGYGQGSSGAAAAAAAGGPG 210

Query: 503 Y 505
           Y
Sbjct: 211 Y 211

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 57/180 (31%), Positives = 68/180 (37%), Gaps = 16/180 (8%)
 Frame = +2

Query: 5   AAASARIARSPAMPESERGYTPGREGQRT------PGRAFDAAMTPTYAYSPARARTPG- 163
           AAA+A  A   A P  ++GY  G  G         PG        P  A + A A   G 
Sbjct: 174 AAAAAAAAAGGAGPGRQQGYGQGSSGAAAAAAAGGPGYGGQQGFGPGGAGAAAAAAAGGA 233

Query: 164 GTAFSPAYTGPGGFSPINATAS---------FSPIMSSADAAGRATPGRMTPGRSPAGRF 316
           G     AY GPGG     A A          + P  S A AA  A  G   PGR     +
Sbjct: 234 GPGRQQAY-GPGGSGAAAAAAGGAGPGRQQGYGPGGSGAAAAAAAAAGGAGPGRQQG--Y 290

Query: 317 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
               S A+   AA  P +GG  G GP GGAGA A A+           Y P     A ++
Sbjct: 291 GQGSSGAAAAAAAGGPGYGGQQGFGP-GGAGAAAAAAAGGAGPGRQQAYGPGGSGAAAAA 349

[169][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
            RepID=A9UNH9_DROME
          Length = 1887

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 53/169 (31%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TSP                   GYSPS+   + +SP Y
Sbjct: 1597 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVY 1645

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 18/183 (9%)
 Frame = +2

Query: 11   ASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARART 157
            AS R A + P       GY+P   G       +   +    +P++A      YSP  A +
Sbjct: 1613 ASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYS 1672

Query: 158  PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPRMS 331
            P  + +SP       +SP   + S+SP   S+ +    +P     +P  SP    +P  +
Sbjct: 1673 PSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPNYT 1721

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSS 496
            P +P Y+  SP +       PA  A +     Y+P SP Y   SP    SP +P     S
Sbjct: 1722 PVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGS 1781

Query: 497  PGY 505
            P Y
Sbjct: 1782 PQY 1784

[170][TOP]
>UniRef100_C5DXL0 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732
            RepID=C5DXL0_ZYGRC
          Length = 1744

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
 Frame = +2

Query: 65   TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPG-GFSPINATAS-FSP 238
            +PG  G  +PG +     +PTY  SP    +P  +  SP+Y+ P   +SP + + S  SP
Sbjct: 1527 SPGFGGVSSPGFS---PSSPTY--SPT---SPSYSPTSPSYSPPSPNYSPTSPSYSPTSP 1578

Query: 239  IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 418
              S    +   T    +P        +P  SP SP Y+  SP +        +  + +Y+
Sbjct: 1579 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 1637

Query: 419  PASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1638 PTSPSYSPTSP--SYSPTSPSYSPTSPSY 1664

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP    +   Y+P       P   +    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1542 SPTYSPTSPSYSPTSPSYSPPSPNYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1597

Query: 191  GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
             P  +SP   + S+SP   S      +     +P  SP    +P  SP SP Y+  SP +
Sbjct: 1598 SPS-YSP--TSPSYSPTSPSYSPTSPSY-SPTSPSYSPT---SPSYSPTSPSYSPTSPSY 1650

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                    +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1651 --------SPTSPSYSPTSPSYSPTSP--NYSPTSPSYSPTSPSY 1685

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+       Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1556 SPSYSPPSPNYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1611

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1612 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPN 1670

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1671 Y--------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1706

[171][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
            RepID=A8N128_COPC7
          Length = 1642

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
 Frame = +2

Query: 116  MTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINA-TASFSPIMSSA---DAAGRATPGR 283
            M+P   YSP+        A+SP   G    SP  A T+ FS   +++   D+  +AT   
Sbjct: 1492 MSPGPGYSPSSPN-----AYSPTSPGMVPRSPYGAPTSPFSNQYATSPFYDSRRQATSPT 1546

Query: 284  MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA---YAPASPAYMATSPG 454
             +P    AG  +P  SP SPG++  SP   G     P  G+ A   Y+PASP+Y      
Sbjct: 1547 YSPTSPIAGLTSPAYSPTSPGFSPTSPN--GYSPQSPNFGSPASPNYSPASPSYSPAPAS 1604

Query: 455  MGYSPSTPALAVSSPGY 505
              YSPS+P  + +SP +
Sbjct: 1605 PNYSPSSPTWSPTSPAH 1621

[172][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3GID7_PICST
          Length = 1739

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAMTPTY-----AYSPARARTPGGTAFSPAY--TGPGG 202
            P S    +P   G  +P  +F  +++P Y     +YSP    +P  +  SP+Y  T P  
Sbjct: 1517 PTSPSATSPFSYGSTSP--SFGGSVSPGYGGTSPSYSPT---SPSYSPTSPSYSPTSPS- 1570

Query: 203  FSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 379
            +SP + A +  SP  S    +   T    +P        +P  SP SP Y+  SP +   
Sbjct: 1571 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1627

Query: 380  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1628 -----SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1662

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
 Frame = +2

Query: 8    AASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPA 184
            +A++  +     P      +PG  G          + +PT  +YSP    +P  +  SPA
Sbjct: 1521 SATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPA 1577

Query: 185  Y--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA 355
            Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+ 
Sbjct: 1578 YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636

Query: 356  MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1637 TSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1683

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
 Frame = +2

Query: 224  ASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 397
            A FSPI ++   D +G  T        S  G+ T   + +   Y + SP FGG +  G  
Sbjct: 1493 AGFSPIHTAQVQDVSGGLT--------SYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYG 1544

Query: 398  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            G + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1545 GTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAY 1578

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          A+    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1554 SPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1609

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1610 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1668

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P  + +SP Y
Sbjct: 1669 Y--------SPTSPSYSPTSPSYSPTSPQ--YSPTSPQYSPTSPSY 1704

[173][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
            melanogaster RepID=RPB1_DROME
          Length = 1887

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 53/169 (31%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATSP-----------------GMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TSP                   GYSPS+   + +SP Y
Sbjct: 1597 NYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVY 1645

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 18/183 (9%)
 Frame = +2

Query: 11   ASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARART 157
            AS R A + P       GY+P   G       +   +    +P++A      YSP  A +
Sbjct: 1613 ASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYS 1672

Query: 158  PGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPRMS 331
            P  + +SP       +SP   + S+SP   S+ +    +P     +P  SP    +P  +
Sbjct: 1673 PSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPNYT 1721

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAVSS 496
            P +P Y+  SP +       PA  A +     Y+P SP Y   SP    SP +P     S
Sbjct: 1722 PVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGS 1781

Query: 497  PGY 505
            P Y
Sbjct: 1782 PQY 1784

[174][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4PY98_DROYA
          Length = 1889

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAA----MTPTYA------YSPARA 151
            A+AS R A + P       GY+P   G       +        +P++A      YSP  A
Sbjct: 1613 ASASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTPNFQSSPSFAGSGSNIYSPGNA 1672

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
             +P  + +SP       +SP   + S+SP   S+ +    +P     +P  SP    +P 
Sbjct: 1673 YSPSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490
             +P +P Y+  SP +       PA  A +     Y+P SP Y   SP    SP +P    
Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781

Query: 491  SSPGY 505
             SP Y
Sbjct: 1782 GSPQY 1786

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TSP   Y+ ++P  A ++P +
Sbjct: 1597 NYSPSSPNYSPTSP--LYASASPRYASTTPNF 1626

[175][TOP]
>UniRef100_C8Z6G2 Rpo21p n=1 Tax=Saccharomyces cerevisiae EC1118 RepID=C8Z6G2_YEAST
          Length = 1733

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SPA   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SPGY
Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710

[176][TOP]
>UniRef100_C7GKZ2 Rpo21p n=2 Tax=Saccharomyces cerevisiae RepID=C7GKZ2_YEAS2
          Length = 1733

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SPA   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SPGY
Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710

[177][TOP]
>UniRef100_B3LH31 DNA-directed RNA polymerase n=1 Tax=Saccharomyces cerevisiae RM11-1a
            RepID=B3LH31_YEAS1
          Length = 1733

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SPA   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SPGY
Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710

[178][TOP]
>UniRef100_P04050 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Saccharomyces
            cerevisiae RepID=RPB1_YEAST
          Length = 1733

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SPA   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1608

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1609 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS 1667

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SPGY
Sbjct: 1668 YSP-TSPSYSPTSPSYSPTSPSYSPTSPN--YSPTSPSYSPTSPGY 1710

[179][TOP]
>UniRef100_Q7XRB2 OSJNBa0006B20.10 protein n=3 Tax=Oryza sativa RepID=Q7XRB2_ORYSJ
          Length = 335

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 51/162 (31%), Positives = 69/162 (42%), Gaps = 4/162 (2%)
 Frame = +2

Query: 32  SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPG-GFS 208
           +PA P   R  +P    +  P RA     +P  A  P RA +P  T  SP        +S
Sbjct: 64  TPASPPHRRAASPDYTPESPPRRAASPDYSP--ASPPRRAASPDYTPESPPRRAASPDYS 121

Query: 209 PINATA-SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY--AAMSPRFGGG 379
           P +    + SP  + A  + RA     TP   P    +P  +PASP    AA SP +   
Sbjct: 122 PESPPRRAASPDYTPASPSRRAASPDYTPESPPRRAASPDYTPASPSRRAAASSPDYTPE 181

Query: 380 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   +  Y+P++P   A SP   YSPSTP    +SP Y
Sbjct: 182 SPPRRRAASPDYSPSTPPRRAASPD--YSPSTPPRRAASPDY 221

[180][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4JXA6_DROGR
          Length = 1889

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 51/157 (32%), Positives = 65/157 (41%), Gaps = 8/157 (5%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WVNCHTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TSP        Y+ +TP     S GY
Sbjct: 1597 NYSPSSPNYSPTSPLYTATSPRYASATPNFNAQSTGY 1633

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 50/178 (28%), Positives = 68/178 (38%), Gaps = 12/178 (6%)
 Frame = +2

Query: 8    AASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARAR 154
            A S R A + P       GY+P   G       +        +P++A      YSP  A 
Sbjct: 1614 ATSPRYASATPNFNAQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNLYSPGNAY 1673

Query: 155  TPGGTAFSPAYTGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
            +P  + +SP       +SP++ + S  SP  S        T    +P        TP  S
Sbjct: 1674 SPSSSNYSP---NSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPKYTAVTPSYS 1730

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            P SP Y+A SP +          G   Y+P SP Y   SP    SP +P     SP Y
Sbjct: 1731 PTSPNYSA-SPHYSPASPAYSQTGV-KYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1786

[181][TOP]
>UniRef100_O96452 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae
            RepID=O96452_ANTLO
          Length = 1553

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 36/97 (37%), Positives = 48/97 (49%)
 Frame = +2

Query: 215  NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 394
            +++  FSPI +   AAG  TP   +P        +P  SP SP Y+  SP          
Sbjct: 1417 SSSVPFSPIAAHGYAAG-TTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSP---------- 1465

Query: 395  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                 AY+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1466 -----AYSPTSPAYSPTSP--AYSPTSPAYSPTSPAY 1495

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
 Frame = +2

Query: 182  AYTGPGGFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
            A T P  +SP + A +  SP  S    A   T    +P        +P  SP SP Y+  
Sbjct: 1432 AGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1491

Query: 359  SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            SP +        +  + AY+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1492 SPAY--------SPTSPAYSPTSPAYSPTSP--AYSPTSPAYSPTSPVY 1530

[182][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
            RepID=C7YI77_NECH7
          Length = 1750

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 17/166 (10%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAF-DAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFS 235
            GY+P      +P     D  M   YA SP+ +  P   +FSP        SP  A+ ++S
Sbjct: 1573 GYSPTSPNAYSPTSPLVDGGMGGRYATSPSFS--PSSPSFSPTSPMVRPTSP--ASPNYS 1628

Query: 236  PIMSSADAAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
            P   +   A  ++P   +P  SPA      +P  SPASP Y+  SP    G    P+   
Sbjct: 1629 PSSPNYSPASPSSPRHYSP-TSPAQFNSPTSPNYSPASPNYSPASPNLHAGGTTSPS--- 1684

Query: 407  GAYAPASPAYMATSP-------------GMGYSPSTPALAVSSPGY 505
              Y+PASP +  TSP             G   SP++P+ + +SP +
Sbjct: 1685 --YSPASPTWSPTSPEAYSPTSPYQRSPGAQQSPTSPSYSPTSPAF 1728

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 5/150 (3%)
 Frame = +2

Query: 65   TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPI--NATASFSP 238
            TP   G    G     AM+P   Y+     +P  T+ +  +   GG+SP   NA +  SP
Sbjct: 1531 TPAGFGNTEYGFGGSTAMSP---YAMRGGTSPFTTSPTSPFGPGGGYSPTSPNAYSPTSP 1587

Query: 239  IMSSADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            ++        AT    +P     SP        SPASP Y+  SP +       P     
Sbjct: 1588 LVDGGMGGRYATSPSFSPSSPSFSPTSPMVRPTSPASPNYSPSSPNYSPASPSSPRH--- 1644

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSP 499
             Y+P SPA   +     YSP++P  + +SP
Sbjct: 1645 -YSPTSPAQFNSPTSPNYSPASPNYSPASP 1673

[183][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 5 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B19
          Length = 1693

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 47/145 (32%), Positives = 66/145 (45%)
 Frame = +2

Query: 71   GREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSS 250
            GR G  TPG A   AM+P+Y+        P   A+ P    PGG++P   + S+SP    
Sbjct: 1480 GRSGM-TPGAA-GGAMSPSYS--------PTSPAYEPR--SPGGYTP--QSPSYSPT--- 1522

Query: 251  ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
                        +P  SP    +P  SP SP Y+  SP               +Y+P SP
Sbjct: 1523 ------------SPSYSPT---SPSYSPTSPNYSPTSP---------------SYSPTSP 1552

Query: 431  AYMATSPGMGYSPSTPALAVSSPGY 505
            +Y  TSP   YSP++P+ + +SP Y
Sbjct: 1553 SYSPTSP--SYSPTSPSYSPTSPSY 1575

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP        +P  +  S
Sbjct: 1492 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1551

Query: 179  PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
            P+Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y
Sbjct: 1552 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1610

Query: 350  AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
            +  SP +              +  + +Y+P SP+Y  TSP               YSP++
Sbjct: 1611 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1670

Query: 476  PALAVSSPGY 505
            P+ + +SP Y
Sbjct: 1671 PSYSPTSPNY 1680

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 34/83 (40%), Positives = 45/83 (54%)
 Frame = +2

Query: 257  AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436
            AAGR+    MTPG +  G  +P  SP SP Y   SP       GG    + +Y+P SP+Y
Sbjct: 1478 AAGRSG---MTPGAA-GGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSY 1526

Query: 437  MATSPGMGYSPSTPALAVSSPGY 505
              TSP   YSP++P  + +SP Y
Sbjct: 1527 SPTSP--SYSPTSPNYSPTSPSY 1547

[184][TOP]
>UniRef100_Q30GY4 CT099 (Fragment) n=1 Tax=Solanum ochranthum RepID=Q30GY4_9SOLN
          Length = 305

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 15/163 (9%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPG----GTAFSPAYTGPGGFS------ 208
           G  P   G  TP        TP+   SPA A   G    GT  +P+   P G +      
Sbjct: 104 GVAPPSNGSTTPSPTGSPPSTPSGGSSPAAAPPKGSSTPGTPSAPSANAPAGSATPGASS 163

Query: 209 ----PINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
               P++  A  SP  S   +   A+P    P  +  G   P MSP + G +  +P    
Sbjct: 164 PNGAPVSTPAGKSPTSSPTPSGSTASP----PAPATGGSVAPAMSPVANGPSTSTPGSSS 219

Query: 377 GLGGGPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            + GGP+ G+G A +   P+    +P    +   P +A  SPG
Sbjct: 220 PIAGGPSSGSGIAPSAGGPSGSVIAP----AADGPVVASVSPG 258

[185][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MQ29_DROAN
          Length = 1889

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 1497 GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 1548

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 1549 WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 1596

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             Y+P+SP Y  TSP   Y+ ++P  A ++P +
Sbjct: 1597 NYSPSSPNYSPTSP--LYATTSPRYASTTPNF 1626

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
            A  S R A + P       GY+P   G       +        +P++A      YSP  A
Sbjct: 1613 ATTSPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTSNYQSSPSFAGSGSNMYSPGNA 1672

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
             +P  + +SP       +SP   + S+SP   S+ +    +P     +P  SP    +P 
Sbjct: 1673 YSPSSSNYSP---NSPSYSP--TSPSYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490
             +P +P Y+  SP +       PA  A +     Y+P SP Y   SP    SP +P    
Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781

Query: 491  SSPGY 505
             SP Y
Sbjct: 1782 GSPQY 1786

[186][TOP]
>UniRef100_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
            RepID=C4VAM1_NOSCE
          Length = 1612

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGRE----GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY--TG 193
            SPA    E  Y+P       G  + G A  +    + +YSP    +P  +  SP+Y  T 
Sbjct: 1427 SPAYLAEESKYSPKLSLFSVGSPSYGSASPSYSPTSPSYSPT---SPSYSPTSPSYSPTS 1483

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP +
Sbjct: 1484 PS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1542

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                    +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1543 --------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSY 1577

[187][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 17 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B26
          Length = 1684

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 25/190 (13%)
 Frame = +2

Query: 11   ASARIARSPAM-PESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TP 160
            A+ R + SPA  P S  GYTP +    +P     +  +P+Y+     YSP        +P
Sbjct: 1485 AAGRESTSPAYEPRSPGGYTP-QSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1543

Query: 161  GGTAFSPAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS 331
              +  SP+Y  T P  +SP + + S  SP  S    +   T    +P        +P  S
Sbjct: 1544 SYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1602

Query: 332  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
            P SP Y+  SP +        +  + +Y+P SP+Y  TSP               YSP++
Sbjct: 1603 PTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1661

Query: 476  PALAVSSPGY 505
            P+ + +SP Y
Sbjct: 1662 PSYSPTSPNY 1671

[188][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
            RepID=UPI000023F34A
          Length = 1758

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
 Frame = +2

Query: 119  TPTYAYSPARARTPGG---------TAFSPAYTGPGGFSPI-----NATASFSPIMSSAD 256
            +P   YSP      GG          +FSP+       SP+      A+ S+SP   S  
Sbjct: 1582 SPNMGYSPTSPLIDGGGMGRYGPTSPSFSPSSPSFSPTSPMLRPTSPASPSYSPTSPSYS 1641

Query: 257  AAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPAS 427
                ++P   +P  SPA      +P  SPASP Y+  SP   G   GGP   + +Y+PAS
Sbjct: 1642 PTSPSSPRHYSP-TSPAQFNSPTSPSYSPASPNYSPTSPNVHG--AGGPT--SPSYSPAS 1696

Query: 428  PAYMATSPGMGYSPSTP 478
            P++  TSP   YSP++P
Sbjct: 1697 PSWSPTSP-EAYSPTSP 1712

[189][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4L732_DROMO
          Length = 1889

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPA---RARTPGGTAFSP-AYTGPGGFSPINATA 226
            G TP      TP   +    TP Y +SP+    A TPGG +FSP A +   G SP     
Sbjct: 1497 GSTPSMTPPMTP---WVNCHTPRY-FSPSGHVSAMTPGGPSFSPSAASDASGMSP----- 1547

Query: 227  SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
            S+SP      A   ++P    P  SP   + P     SP Y+  SP +       P G +
Sbjct: 1548 SWSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGAS 1595

Query: 407  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              Y+P+SP Y  TSP   Y+ ++P  A ++P +
Sbjct: 1596 PNYSPSSPNYSPTSP--LYASTSPRYASTTPNF 1626

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 18/185 (9%)
 Frame = +2

Query: 5    AAASARIARS-PAMPESERGYTPGREGQRTPGRAFDAAM----TPTYA------YSPARA 151
            A+ S R A + P       GY+P   G       +        +P++A      YSP  A
Sbjct: 1613 ASTSPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNA 1672

Query: 152  RTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPR 325
             +P  + +SP        SP     S+SP   S+ +    +P     +P  SP    +P 
Sbjct: 1673 YSPSSSNYSPNSPSYSPMSP-----SYSP---SSPSYSPTSPCYSPTSPSYSPT---SPN 1721

Query: 326  MSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMATSPGMGYSPSTPALAV 490
             +P +P Y+  SP +       PA  A +     Y+P SP Y   SP    SP +P    
Sbjct: 1722 YTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTP 1781

Query: 491  SSPGY 505
             SP Y
Sbjct: 1782 GSPQY 1786

[190][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
            6260 RepID=UPI000151A8B3
          Length = 1018

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 49/139 (35%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
 Frame = +2

Query: 137  SPARARTPGGTAFSP-AYTGPGGFSP------------INATASFSPIMSS--ADAAGRA 271
            SP+    P G A    AY   GG +P                A FSPI ++  +D AG  
Sbjct: 721  SPSNMSVPVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGAL 780

Query: 272  TPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 448
            T     PG SP        SP SP  Y A SP +GG    G    +  Y+P SP+Y  TS
Sbjct: 781  TAYGGQPG-SP--------SPTSPFAYGATSPAYGGA-SPGYGVTSPTYSPTSPSYSPTS 830

Query: 449  PGMGYSPSTPALAVSSPGY 505
            P   YSP++P+ + +SP Y
Sbjct: 831  P--SYSPTSPSYSPTSPSY 847

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
 Frame = +2

Query: 101  AFDAAMTP--TYAYSPARARTPGGTAFSPAYTGP--GGFSPINATASF--SPIMSSADAA 262
            A D   TP   Y     + +   G  FSP +T P   G   + A      SP  +S  A 
Sbjct: 739  ADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGALTAYGGQPGSPSPTSPFAY 798

Query: 263  GRATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436
            G  +P  G  +PG    G  +P  SP SP Y+  SP +        +  + +Y+P SP+Y
Sbjct: 799  GATSPAYGGASPGY---GVTSPTYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSY 847

Query: 437  MATSPGMGYSPSTPALAVSSPGY 505
              TSP   YSP++P+ + +SP Y
Sbjct: 848  SPTSP--SYSPTSPSYSPTSPSY 868

[191][TOP]
>UniRef100_Q8FM53 Putative uncharacterized protein n=1 Tax=Corynebacterium efficiens
           RepID=Q8FM53_COREF
          Length = 609

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 52/150 (34%), Positives = 64/150 (42%), Gaps = 12/150 (8%)
 Frame = +2

Query: 89  TPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGR 268
           TPG A  A  TPT   +P  A    G A   A   PG   P    A  +P +++  A G 
Sbjct: 94  TPGAAVPAPATPTPPAAPGSAIPAPGAATPTAVPTPGSAIPTPGAAVPAPGVATPSAPGA 153

Query: 269 ATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL----GGGPA-----GGAGAYAP 421
           + P   TPG   A   TP  +  +PG AA      G      GG PA        GA AP
Sbjct: 154 SIP---TPG---AAMPTPGTATPAPGAAAPGATIPGSAVPAPGGAPAAPGAPAAPGAAAP 207

Query: 422 ASPAYMATSPGM---GYSPSTPALAVSSPG 502
            +PA  A  PG    G +  TP  A+S+PG
Sbjct: 208 RTPAPGAAIPGAVAPGSAVPTPG-AISAPG 236

[192][TOP]
>UniRef100_B5DKU7 GA22939 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5DKU7_DROPS
          Length = 893

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 4/169 (2%)
 Frame = +2

Query: 8   AASARIARSPAMPESERGYT--PGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
           A S    R+PA P +  G T  PG     TP      A++     +PA    P G+  +P
Sbjct: 446 AGSTAAPRTPADPNAPAGSTAAPG-----TPADPNAPAVSTAAPGTPADPNAPAGSTAAP 500

Query: 182 AYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-- 355
                     ++  A  +P   +A A   A PG      +PA    P +S A+PG  A  
Sbjct: 501 GTPADPNAPAVSTAAPGTPADPNAPAVSTAAPG------TPADPNAPAVSTAAPGTPADP 554

Query: 356 MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            +P       G PA      AP +PA    +PG    P+ PA++ ++PG
Sbjct: 555 NAPPVSTAAPGTPAAPGTPAAPGTPA----APGAPAVPNAPAVSTAAPG 599

[193][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
            Tax=Pichia guilliermondii RepID=RPB1_PICGU
          Length = 1579

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 49/139 (35%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
 Frame = +2

Query: 137  SPARARTPGGTAFSP-AYTGPGGFSP------------INATASFSPIMSS--ADAAGRA 271
            SP+    P G A    AY   GG +P                A FSPI ++  +D AG  
Sbjct: 1287 SPSNMSVPVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGAL 1346

Query: 272  TPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 448
            T     PG SP        SP SP  Y A SP +GG    G    +  Y+P SP+Y  TS
Sbjct: 1347 TAYGGQPG-SP--------SPTSPFAYGATSPAYGGA-SPGYGVTSPTYSPTSPSYSPTS 1396

Query: 449  PGMGYSPSTPALAVSSPGY 505
            P   YSP++P+ + +SP Y
Sbjct: 1397 P--SYSPTSPSYSPTSPSY 1413

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
 Frame = +2

Query: 101  AFDAAMTP--TYAYSPARARTPGGTAFSPAYTGP--GGFSPINATASF--SPIMSSADAA 262
            A D   TP   Y     + +   G  FSP +T P   G   + A      SP  +S  A 
Sbjct: 1305 ADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGALTAYGGQPGSPSPTSPFAY 1364

Query: 263  GRATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 436
            G  +P  G  +PG    G  +P  SP SP Y+  SP +        +  + +Y+P SP+Y
Sbjct: 1365 GATSPAYGGASPGY---GVTSPTYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSY 1413

Query: 437  MATSPGMGYSPSTPALAVSSPGY 505
              TSP   YSP++P+ + +SP Y
Sbjct: 1414 SPTSP--SYSPTSPSYSPTSPSY 1434

[194][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
 Frame = +2

Query: 119  TPTYAYSPARARTPGGTAFSPAY----TGPGGFSPINATAS-FSPIMSSADAAGRATPGR 283
            +P+Y+YSP    +P  +  SP+Y    T P  +SP + + S  SP  S    +   T   
Sbjct: 1680 SPSYSYSPT---SPSYSPTSPSYNYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1735

Query: 284  MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-GPAG----GAGAYAPASPAYMA-T 445
             +P  S     +P  SP SPGY+  SP +        P+      + AY+P+SP Y + T
Sbjct: 1736 YSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSST 1795

Query: 446  SPGMGYSPSTPALAVSSPGY 505
            SP   YSP++P+ +  SP Y
Sbjct: 1796 SPT--YSPTSPSYSQPSPSY 1813

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAMTP----TYAYSPARARTPGGTA--FSPAYTGPGGF 205
            P S  GY+P      TPG     + +P    +  YSPA   +   T+  + P        
Sbjct: 1549 PSSGGGYSPSPP-VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPT 1607

Query: 206  SPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 385
            SPI +  S  PI S +      T    +P        +P  +P S  Y+  SP +     
Sbjct: 1608 SPIYSATS--PIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN---- 1661

Query: 386  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
              P   + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1662 --PTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSY 1699

[195][TOP]
>UniRef100_UPI00005A516D PREDICTED: hypothetical protein XP_855920 n=1 Tax=Canis lupus
           familiaris RepID=UPI00005A516D
          Length = 335

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
 Frame = +2

Query: 65  TPGRE--GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINAT-ASFS 235
           TPGR   G+ TP R+  +  TP  + +P+R+ TP  +  +PA   PG  +P  +T A  +
Sbjct: 11  TPGRSTPGRSTPSRSTPSRSTPARS-TPSRSTTPARS--TPARNTPGRSTPARSTPARST 67

Query: 236 PIMS--SADAAGRATPGRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFGGGLGGGPAGGA 406
           P  S  S     R+TP R TPGRS   R TP R +PA    A  +P         P+   
Sbjct: 68  PGRSTPSRSTPSRSTPARSTPGRSTPSRSTPARSTPARSKPARSTPSRSTPTRSTPSRST 127

Query: 407 GAYA-PASPAYMATSPGMGY-SPSTPALAVSS 496
            A + PA      ++PG    S STP  +  S
Sbjct: 128 PARSTPARSTPARSTPGRSTPSRSTPGRSTPS 159

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
 Frame = +2

Query: 26  ARSPAMPESERGYTPGRE-------GQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           ARS     +    TPGR         + TPGR+  +  TP+ + +PAR+ TP  +  +P+
Sbjct: 139 ARSTPGRSTPSRSTPGRSTPSRSTPSRSTPGRSTPSRSTPSRS-TPARS-TPARS--TPS 194

Query: 185 YTGPGGFSPINATASFS-PIMS--SADAAGRATPGRMTPGRSPAGRFTP-RMSPA--SPG 346
            + P   +P  +T S S P  S  S     R+TP R TP RS   R TP R +PA   P 
Sbjct: 195 RSTPARSTPSRSTPSRSTPARSTPSRSTPSRSTPSRSTPSRSTPARSTPSRSTPARTRPL 254

Query: 347 YAAMSPRFGG-GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 478
            A  +P  GG   GGG  G A    P +P   A  P    SP++P
Sbjct: 255 EAPSAPAGGGPACGGGRCGEARERCPRAPG-QARRP----SPASP 294

[196][TOP]
>UniRef100_Q5YNA3 Putative membrane protein n=1 Tax=Nocardia farcinica
            RepID=Q5YNA3_NOCFA
          Length = 1126

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 52/167 (31%), Positives = 61/167 (36%), Gaps = 7/167 (4%)
 Frame = +2

Query: 23   IARSPAMPES-----ERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAY 187
            +A  P  P +     + G  PGR G  +P +A  A         PA      G    PA 
Sbjct: 797  VAPDPTRPRAHPQPGQEGARPGRPGPASPFQAGSAFQAVPSVDQPATGPKQPGHPGKPA- 855

Query: 188  TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS--PASPGYAAMS 361
             GP G              SS    GR  P R  PGRS      P  S  P  PG AA +
Sbjct: 856  -GPSG-------------QSSVPGLGRPLPSRPQPGRSAPAEPQPGPSAQPPHPGGAA-A 900

Query: 362  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 502
            P+ GGG    P  GA    P +P      P    +P  PA  V  PG
Sbjct: 901  PKAGGG---APLPGARPAPPRAPGASVGEPTRPQAPPRPARPVGPPG 944

[197][TOP]
>UniRef100_Q0JJP4 Os01g0726700 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q0JJP4_ORYSJ
          Length = 662

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 56/193 (29%), Positives = 73/193 (37%), Gaps = 27/193 (13%)
 Frame = +2

Query: 2   DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
           D   S     SP  P    GYTP          +  +  TP    +P    TP   +   
Sbjct: 232 DTPPSPSSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGT 291

Query: 182 AYTGPGG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
           + T PGG + P   +    P   S+D +   TPG    G SP+   TP  +P SP     
Sbjct: 292 SPTTPGGSYYPPTPSIGDVPPSPSSDTSP-TTPG----GGSPS---TPCDTPPSPSSGTS 343

Query: 359 SPRFGGGL----------------GGGPAG-GAGAYAPASPAYMA---------TSPGMG 460
               GGG                 G  P+  G+G Y+P++P             T+PG G
Sbjct: 344 PTTPGGGYYPPTPSVGDVPPSPASGTSPSTPGSGGYSPSTPCSAPPSPSSGTSPTTPGGG 403

Query: 461 YSPSTPALAVSSP 499
           YSPSTP  A  SP
Sbjct: 404 YSPSTPCNAPPSP 416

[198][TOP]
>UniRef100_B9EZH8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=B9EZH8_ORYSJ
          Length = 650

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 56/193 (29%), Positives = 73/193 (37%), Gaps = 27/193 (13%)
 Frame = +2

Query: 2   DAAASARIARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSP 181
           D   S     SP  P    GYTP          +  +  TP    +P    TP   +   
Sbjct: 220 DTPPSPSSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGT 279

Query: 182 AYTGPGG-FSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM 358
           + T PGG + P   +    P   S+D +   TPG    G SP+   TP  +P SP     
Sbjct: 280 SPTTPGGSYYPPTPSIGDVPPSPSSDTSP-TTPG----GGSPS---TPCDTPPSPSSGTS 331

Query: 359 SPRFGGGL----------------GGGPAG-GAGAYAPASPAYMA---------TSPGMG 460
               GGG                 G  P+  G+G Y+P++P             T+PG G
Sbjct: 332 PTTPGGGYYPPTPSVGDVPPSPASGTSPSTPGSGGYSPSTPCSAPPSPSSGTSPTTPGGG 391

Query: 461 YSPSTPALAVSSP 499
           YSPSTP  A  SP
Sbjct: 392 YSPSTPCNAPPSP 404

[199][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
            Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
          Length = 766

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 49/150 (32%), Positives = 66/150 (44%), Gaps = 3/150 (2%)
 Frame = +2

Query: 59   GYTPGREGQRTPGRAFDAAMTPTYAYSPAR--ARTPGGTAFSP-AYTGPGGFSPINATAS 229
            G TP      TP   +    TP Y   P    A TPGG +FSP A +   G SP     S
Sbjct: 639  GSTPSMTPPMTP---WVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSP-----S 690

Query: 230  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
            +SP      A   ++P    P  SP   + P     SP Y+  SP +       P G + 
Sbjct: 691  WSP------AHPGSSPSSPGPSMSP---YFPASPSVSPSYSPTSPNY---TASSPGGASP 738

Query: 410  AYAPASPAYMATSPGMGYSPSTPALAVSSP 499
             Y+P+SP Y  TSP   Y+ ++P  A ++P
Sbjct: 739  NYSPSSPNYSPTSP--LYASASPRYASTTP 766

[200][TOP]
>UniRef100_UPI0001A2C6C2 pygopus homolog 2 n=1 Tax=Danio rerio RepID=UPI0001A2C6C2
          Length = 533

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 42/126 (33%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
 Frame = +2

Query: 158 PGGTAFSPAY-TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
           PGG  F P+   G GG+            M      G   PGR    R P G  TP   P
Sbjct: 72  PGGATFLPSPGAGGGGYGGPGRMGGGMGFMGGPGGPGSGQPGR----RPPFGPPTPNTGP 127

Query: 335 ASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--------ATSPGMGYSPS-TPAL 484
             P G+  M P FGGG GGG  GG G + P  P+             PG G++P  +P  
Sbjct: 128 HHPLGFGGM-PGFGGG-GGGGGGGGGGFPPGGPSQFNMPPNFSPPMHPGQGFNPMLSPGA 185

Query: 485 AVSSPG 502
               PG
Sbjct: 186 MGGGPG 191

[201][TOP]
>UniRef100_UPI0000DC19F8 UPI0000DC19F8 related cluster n=1 Tax=Rattus norvegicus
           RepID=UPI0000DC19F8
          Length = 417

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 61/179 (34%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
 Frame = +2

Query: 29  RSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGGF 205
           R+P  P      +PGR    +PGRA    ++P  A  SP RA    GT   P   G    
Sbjct: 39  RAPVSP-GRAPVSPGRRAPVSPGRA---PVSPGRAPVSPGRAPVSPGTV--PVSPGRAPV 92

Query: 206 SPINATASFSPIMSSADAAGRA---------TPGR--MTPGRSPA--GRF--TPRMSPAS 340
           SP    A  SP   +  + GRA         +PGR  ++PGR+P   GR   +P  +P S
Sbjct: 93  SP--GRAPVSPGERAPVSPGRAPVSPGRAPVSPGRAPVSPGRAPVSPGRVPVSPGRAPVS 150

Query: 341 PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-----GYSPSTPALAVSSPG 502
           PG A +SP        G A  +   AP SP  +  SPG      G +P +P  A  SPG
Sbjct: 151 PGRAPVSP--------GRAPVSPGRAPVSPGTVPVSPGTVPVSPGRAPVSPGRAPVSPG 201

[202][TOP]
>UniRef100_Q1L8T6 Novel protein similar to vertebrate pygopus homolog 2 (Drosophila)
           (PYGO2) n=1 Tax=Danio rerio RepID=Q1L8T6_DANRE
          Length = 571

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 42/126 (33%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
 Frame = +2

Query: 158 PGGTAFSPAY-TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
           PGG  F P+   G GG+            M      G   PGR    R P G  TP   P
Sbjct: 72  PGGATFLPSPGAGGGGYGGPGRMGGGMGFMGGPGGPGSGQPGR----RPPFGPPTPNTGP 127

Query: 335 ASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--------ATSPGMGYSPS-TPAL 484
             P G+  M P FGGG GGG  GG G + P  P+             PG G++P  +P  
Sbjct: 128 HHPLGFGGM-PGFGGG-GGGGGGGGGGFPPGGPSQFNMPPNFSPPMHPGQGFNPMLSPGA 185

Query: 485 AVSSPG 502
               PG
Sbjct: 186 MGGGPG 191

[203][TOP]
>UniRef100_B4V7K0 DNA polymerase III subunits gamma and tau n=1 Tax=Streptomyces sp.
           Mg1 RepID=B4V7K0_9ACTO
          Length = 753

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 57/166 (34%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
 Frame = +2

Query: 8   AASARIARSPAMPESERGYTPGREGQRT----PGRAFDAAMT------PTYAYSPARART 157
           AA+A +A  PA   +  GY PG E        PG    AA        P  +  PA A  
Sbjct: 398 AAAAALAVPPAGAPA-MGYVPGPEAHGMAPAGPGGGVAAARAAVRGAGPEESAPPAPAAA 456

Query: 158 PGGTAFSPA-YTGPGGFSPINATASFSPIMSSADA---AGRATPGRMTPGRSPAGRFTPR 325
           P   A +PA    P   +P  A A  +P  + A A   A  A PG   PG    G +   
Sbjct: 457 PAPVAQAPAPVAAPAPVAPEPAPAPVAPPAAEAPAPASAPGAWPGAAKPGSGAPGAWPGA 516

Query: 326 MSPASPGYAAMSPRFGGGLG-GGPA-GGAGAYAPASPAYMATSPGM 457
            +PA+P   A       G G   PA   A A APA+PA  A SPGM
Sbjct: 517 AAPAAPAAGAWPSTAAPGTGPAAPAPAPAPAPAPAAPAPAAPSPGM 562

[204][TOP]
>UniRef100_Q75A34 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Eremothecium
            gossypii RepID=RPB1_ASHGO
          Length = 1745

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SPA   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1549 SPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1604

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP 
Sbjct: 1605 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1663

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
            +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1664 YSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1706

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPARARTPGGTAFSPAY--TGP 196
            A SP         +PG     +PG       +PT  AYSP    +P  +  SP+Y  T P
Sbjct: 1521 ATSPFSGYGNGPTSPGFGDVSSPG------FSPTSPAYSPT---SPSYSPTSPSYSPTSP 1571

Query: 197  GGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 373
              +SP + + S  SP  S    +   T    +P        +P  SP SP Y+  SP + 
Sbjct: 1572 S-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1629

Query: 374  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                   +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1630 -------SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1664

[205][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 16 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B25
          Length = 1752

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1535 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1590

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y+   P 
Sbjct: 1591 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPN 1649

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP 499
            +           + +Y+P SP+Y  TSP   YSPS+P+ + +SP
Sbjct: 1650 Y--------TPTSPSYSPTSPSYSPTSPNYTYSPSSPSYSPTSP 1685

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P          ++    +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1556 SPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1611

Query: 191  GPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR 367
             P  +SP + + S  SP  S    +   T    +P R      +P  SP SP Y+  SP 
Sbjct: 1612 SPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPN 1670

Query: 368  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST--PALAVSSPGY 505
            +              Y+P+SP+Y  TSP   YSP++  P  + +SP Y
Sbjct: 1671 Y-------------TYSPSSPSYSPTSPNPKYSPTSPNPTYSPTSPKY 1705

[206][TOP]
>UniRef100_B0JZI5 Pygo2 protein n=1 Tax=Danio rerio RepID=B0JZI5_DANRE
          Length = 561

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 42/126 (33%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
 Frame = +2

Query: 158 PGGTAFSPAY-TGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP 334
           PGG  F P+   G GG+            M      G   PGR    R P G  TP   P
Sbjct: 101 PGGATFLPSPGAGGGGYGGPGRMGGGMGFMGGPGGPGGGQPGR----RPPFGPPTPNTGP 156

Query: 335 ASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--------ATSPGMGYSPS-TPAL 484
             P G+  M P FGGG GGG  GG G + P  P+             PG G++P  +P  
Sbjct: 157 HHPLGFGGM-PGFGGG-GGGGGGGGGGFPPGGPSQFNMPPNFSPPMHPGQGFNPMLSPGA 214

Query: 485 AVSSPG 502
               PG
Sbjct: 215 MGGGPG 220

[207][TOP]
>UniRef100_B9PMD7 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
            RepID=B9PMD7_TOXGO
          Length = 1892

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 52/186 (27%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR----TPGGTAFSPAYT--G 193
            SP+ P+S      G         A D  ++P    S  R R    +P     SP+Y+   
Sbjct: 1633 SPSSPQSAYFQNDGSSS------AVDMVISPGGVGSDGRGRGGSYSPTSPTLSPSYSPSS 1686

Query: 194  PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP------GYAA 355
            P  +SP   + ++SP  +SA +     PG    GR+P   F+P  +P SP       Y+ 
Sbjct: 1687 PPSYSP--TSPAYSP--TSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSP 1742

Query: 356  MSPRFGGGLGGGPAGGAGAYAPASPAYMATSP----------------GMGYSPSTPALA 487
             SP          +  + AY+P SP Y  TSP                G G  P +P+  
Sbjct: 1743 TSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPSFT 1802

Query: 488  VSSPGY 505
            V SP Y
Sbjct: 1803 VQSPRY 1808

[208][TOP]
>UniRef100_B6KEC6 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii ME49
            RepID=B6KEC6_TOXGO
          Length = 1892

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 52/186 (27%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARAR----TPGGTAFSPAYT--G 193
            SP+ P+S      G         A D  ++P    S  R R    +P     SP+Y+   
Sbjct: 1633 SPSSPQSAYFQNDGSSS------AVDMVISPGGVGSDGRGRGGSYSPTSPTLSPSYSPSA 1686

Query: 194  PGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP------GYAA 355
            P  +SP   + ++SP  +SA +     PG    GR+P   F+P  +P SP       Y+ 
Sbjct: 1687 PPSYSP--TSPAYSP--TSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSP 1742

Query: 356  MSPRFGGGLGGGPAGGAGAYAPASPAYMATSP----------------GMGYSPSTPALA 487
             SP          +  + AY+P SP Y  TSP                G G  P +P+  
Sbjct: 1743 TSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPSFT 1802

Query: 488  VSSPGY 505
            V SP Y
Sbjct: 1803 VQSPRY 1808

[209][TOP]
>UniRef100_A4RMP1 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
            RepID=A4RMP1_MAGGR
          Length = 1757

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 47/142 (33%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
 Frame = +2

Query: 113  AMTPTYAYSPARARTPGGTA-FSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMT 289
            +M P  + +  R  +P  T+  SP   G G +SP +  A +SP     D  GR   G  +
Sbjct: 1550 SMNPYGSGTSPRPTSPFSTSPTSPFSAGYGSYSPTSPMAGYSPTSPMMDG-GRY--GASS 1606

Query: 290  PGRSPAGRFTPRMSPASP----------GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM 439
            P  SP+   +P   P SP          GY+  SP +  G    P GG   Y+P SPA  
Sbjct: 1607 PSFSPS---SPSFQPTSPIMRHGAGDSMGYSPTSPTYQPG---SPTGGDNHYSPTSPAQF 1660

Query: 440  ATSPGMG-YSPSTPALAVSSPG 502
              SP    YSP++P+    SPG
Sbjct: 1661 GASPTSPLYSPASPSF---SPG 1679

[210][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARARTPGGTAFSPAY--T 190
            SP+   +   Y+P      +P   F +  +P+Y+     YSP    +P  +  SP+Y  T
Sbjct: 1578 SPSYSPTSPSYSPTSPSY-SPTSPFYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPT 1633

Query: 191  GPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
             P  +SP   + S+SP   S            +P  SP    +P  SP SP Y+  SP  
Sbjct: 1634 SPS-YSP--TSPSYSPTSPSYSPT--------SPSYSPT---SPSYSPTSPSYSPTSP-- 1677

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                         +Y+P SP+Y  +SP   YSPS+P+ + SSP Y
Sbjct: 1678 -------------SYSPTSPSYSPSSP--SYSPSSPSYSPSSPSY 1707

[211][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 14 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B23
          Length = 1653

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-----YSPARAR----TPGGTAFS 178
            A SP+   +   Y P   G  TP     +  +P+Y+     YSP        +P  +  S
Sbjct: 1452 AMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1511

Query: 179  PAY--TGPGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY 349
            P+Y  T P  +SP + + S  SP  S    +   T    +P        +P  SP SP Y
Sbjct: 1512 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1570

Query: 350  AAMSPRFG------GGLGGGPAGGAGAYAPASPAYMATSPGMG------------YSPST 475
            +  SP +              +  + +Y+P SP+Y  TSP               YSP++
Sbjct: 1571 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1630

Query: 476  PALAVSSPGY 505
            P+ + +SP Y
Sbjct: 1631 PSYSPTSPNY 1640

[212][TOP]
>UniRef100_Q89X06 Blr0521 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89X06_BRAJA
          Length = 745

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 56/181 (30%), Positives = 69/181 (38%), Gaps = 19/181 (10%)
 Frame = +2

Query: 8   AASARIARSPAMPESERGY-TPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPA 184
           A    +A  PA P +  G   P      TP  A  A   PT   +PA   TPG       
Sbjct: 195 ATPTPVAPPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTA--TPAPGSTPGAPPAGRP 252

Query: 185 YTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 364
              P G  P +  A+ SP    A  A   TP        P+GR  P  +PA PG A  +P
Sbjct: 253 GAPPPGVRPGSPPAAGSPPAPGATPAPTTTPAPGGTATPPSGRPGPASTPA-PGAATPAP 311

Query: 365 ---------------RFGGGLGGGPAGG---AGAYAPASPAYMATSPGMGYSPSTPALAV 490
                          R G G   GP GG   AGA A  +PA    + G+   P+ PA A 
Sbjct: 312 TATPAPGGALTPPPGRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLPARPAAPAGAA 371

Query: 491 S 493
           +
Sbjct: 372 A 372

[213][TOP]
>UniRef100_Q9BIU8 Flagelliform silk protein (Fragment) n=1 Tax=Argiope trifasciata
            RepID=Q9BIU8_ARGTR
          Length = 1002

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 44/137 (32%), Positives = 49/137 (35%)
 Frame = +2

Query: 44   PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINAT 223
            P    G+ PG  G   PG A          Y P      G   F P   GPGG  P  A 
Sbjct: 731  PGGAGGFGPGGAGGFGPGGAGGFGPGGAGGYGPGGVGPGGAGGFGPGGVGPGGSGPGGAG 790

Query: 224  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
                P+    D +         PG  P G        A PG A   P  GGG G GP GG
Sbjct: 791  GE-GPVTVDVDVSVGG-----APGGGPGG--------AGPGGAGFGP--GGGAGFGPGGG 834

Query: 404  AGAYAPASPAYMATSPG 454
            AG + P   A   + PG
Sbjct: 835  AG-FGPGGAAGGPSGPG 850

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 44/137 (32%), Positives = 48/137 (35%)
 Frame = +2

Query: 44  PESERGYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINAT 223
           P    G+ PG  G   PG A          Y P      G   F P   GPGG  P  A 
Sbjct: 463 PGGAGGFGPGGAGGFGPGGAGGFGPAGAGGYGPGGVGPGGAGGFGPGGVGPGGSGPGGAG 522

Query: 224 ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 403
               P+    D +         PG  P G        A PG A   P  GGG G GP GG
Sbjct: 523 GE-GPVTVDVDVSVGG-----APGGGPGG--------AGPGGAGFGP--GGGAGFGPGGG 566

Query: 404 AGAYAPASPAYMATSPG 454
           AG + P   A     PG
Sbjct: 567 AG-FGPGGAAGGPGGPG 582

[214][TOP]
>UniRef100_O96446 DNA-directed RNA polymerase n=1 Tax=Vairimorpha necatrix
            RepID=O96446_9MICR
          Length = 1605

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
 Frame = +2

Query: 77   EGQR-TPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATAS-FSPIMSS 250
            EG R  P  +  +  +PTY+ + +   +P    +SP  T P  +SP + T S  SP  S 
Sbjct: 1456 EGNRYAPKTSLYSPTSPTYSPT-SPTYSPTSPTYSP--TSPT-YSPTSPTYSPTSPTYSP 1511

Query: 251  ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 430
               +   T    +P        +P  SP SP Y+  SP +        +  + +Y+P SP
Sbjct: 1512 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSP 1563

Query: 431  AYMATSPGMGYSPSTPALAVSSPGY 505
            +Y  TSP   YSP++P+ + +SP Y
Sbjct: 1564 SYSPTSP--SYSPTSPSYSPTSPSY 1586

[215][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R4Y0_PICPG
          Length = 1743

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
 Frame = +2

Query: 233  SPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 406
            SP   ++      +PG    +PG +P    +PR SP SPGY+  SP +        +  +
Sbjct: 1523 SPYQPTSPGLSATSPGFAPTSPGFAPT---SPRYSPTSPGYSPTSPSY--------SPTS 1571

Query: 407  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
             +Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 1572 PSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 1602

[216][TOP]
>UniRef100_UPI0000E48096 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48096
          Length = 2055

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 48/144 (33%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
 Frame = +2

Query: 68   PGREGQRTPGRA---FDAAMTPTYAYSP-ARARTPGGTAFSPAYTGPGGFSPINATASFS 235
            P R G   P RA   +  A  P    +P A A  P    F+PA   P   +P    A  S
Sbjct: 816  PSRPGYNPPARAPAPYPPARGPVPRPAPRAPAAPPRAPGFAPAPNAPSPHNPDQRYAGGS 875

Query: 236  PIMSSADAAGRATPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 412
                        +PG    PG +P     P  +P +PGYA + PR     G  P G    
Sbjct: 876  SGSEHNIPGYAPSPGAPGAPGYAP-----PPPAPRAPGYAPLPPRRAAP-GFAPPG---- 925

Query: 413  YAPASPAYMATS-PGMGYSPSTPA 481
            +AP +P   A S PG+GY+PS PA
Sbjct: 926  FAPPAPRQFAPSAPGVGYAPSAPA 949

[217][TOP]
>UniRef100_UPI0000EB0AC6 Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2) (180 kDa
            bullous pemphigoid antigen 2) n=1 Tax=Canis lupus
            familiaris RepID=UPI0000EB0AC6
          Length = 1471

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 49/182 (26%), Positives = 66/182 (36%), Gaps = 28/182 (15%)
 Frame = -3

Query: 483  KAGVDGEYPIPGEVAM*AGEAGAYAPAPPAGP----PPSPPPKRGLI--AA*PG--EAGD 328
            + G  GE   PG +    G +    P PP  P    PP PP   G +  A  PG  E  D
Sbjct: 792  RPGAKGEPGAPGRIMTSEGSSTITVPGPPGPPGAMGPPGPPGAPGPVGPAGLPGQQEGVD 851

Query: 327  IRGVKRPAGLRPGVIRPGVARPAASADDMMGENEAVALMGLN------------------ 202
            +RG   P G  PG   P ++ P       +  + A+  +G +                  
Sbjct: 852  LRGPPGPPG-PPGPPGPSISGPPGPCTGFLARSLALQSLGGSFSSPGSLLSNSETYFSGP 910

Query: 201  --PPGPVYAGENAVPPGVRARAGEYA*VGVMAASKARPGVRWPSRPGV*PRSDSGMAGDR 28
              PPGP     +  PPG R   GE    G   +  +  G+     PG  PR   G  GD 
Sbjct: 911  PGPPGPPGPKGDQGPPGPRGHQGEQGPPGFSGSGSSSLGLNLQGPPG--PRGPKGDKGDP 968

Query: 27   AI 22
             +
Sbjct: 969  GV 970

[218][TOP]
>UniRef100_Q9RKR9 Putative multi-domain regulatory protein n=1 Tax=Streptomyces
           coelicolor RepID=Q9RKR9_STRCO
          Length = 1334

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 57/181 (31%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
 Frame = +2

Query: 14  SARIARSPAMPESER-------GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTA 172
           S R A + A  E+ R       G  PG E +         + TPT    P R+RTPG T+
Sbjct: 212 SGRTAEALAAYEAVRRLLADRLGTDPGPELRTLHAELLSPSPTPT----PGRSRTPGWTS 267

Query: 173 FSPAYTGPGGFSPIN----ATASFSPIMSSADAAGRA----TPGRMTPGRSPAGRFTPRM 328
                +G G  S  +    A A+  P  +S  A+G A    + G   PG  PA    P  
Sbjct: 268 GPGPASGAGAASGTDVASGAGAASGPDPASGPASGPAVAPGSGGGPAPGWWPAPGTAPGS 327

Query: 329 SPASP----GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 496
           S A P      A  +P  G     G A  AG  APA P     +PG  Y+P T  +A ++
Sbjct: 328 STAPPHDTASAADTAPAPGPTSAPGTAPAAGTAAPA-PGTAGPAPGTSYAPGTAPVAGTT 386

Query: 497 P 499
           P
Sbjct: 387 P 387

[219][TOP]
>UniRef100_Q4KQZ4 CT099 (Fragment) n=1 Tax=Solanum habrochaites RepID=Q4KQZ4_SOLHA
          Length = 305

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA-SFS 235
           G  P   G  TP        +P  A +P+R  +  GT  +P+   P G SP  A++ + +
Sbjct: 104 GVAPPSNGSTTPPSTPSGGSSP--AAAPSRGSSTPGTPSAPSANAPAGSSPPGASSPNGA 161

Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFT--PRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
           P+ + A  +  ++P       SP    T  P MSP + G ++ +P     L GGP+ G+G
Sbjct: 162 PVSTPAGKSPTSSPTPSGSTASPPSPATVVPAMSPVANGPSSSTPGSSSPLAGGPSSGSG 221

Query: 410 ----AYAPASPAYMATSPG 454
               A  P+  A   T+ G
Sbjct: 222 IAPSADGPSGSAIAPTADG 240

[220][TOP]
>UniRef100_Q4KQZ0 CT099 (Fragment) n=1 Tax=Solanum habrochaites RepID=Q4KQZ0_SOLHA
          Length = 305

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
 Frame = +2

Query: 59  GYTPGREGQRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATA-SFS 235
           G  P   G  TP        +P  A +P+R  +  GT  +P+   P G SP  A++ + +
Sbjct: 104 GVAPPSNGSTTPPSTPSGGSSP--AAAPSRGSSTPGTPSAPSANAPAGSSPPGASSPNGA 161

Query: 236 PIMSSADAAGRATPGRMTPGRSPAGRFT--PRMSPASPGYAAMSPRFGGGLGGGPAGGAG 409
           P+ + A  +  ++P       SP    T  P MSP + G ++ +P     L GGP+ G+G
Sbjct: 162 PVSTPAGKSPTSSPTPSGSTASPPSPATVVPAMSPVANGPSSSTPGSSSPLAGGPSSGSG 221

Query: 410 ----AYAPASPAYMATSPG 454
               A  P+  A   T+ G
Sbjct: 222 IAPSADGPSGSAIAPTADG 240

[221][TOP]
>UniRef100_A4RRF2 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
           RepID=A4RRF2_OSTLU
          Length = 1000

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 55/175 (31%), Positives = 71/175 (40%), Gaps = 15/175 (8%)
 Frame = +2

Query: 26  ARSPAMPESERGYTPGREGQ--RTPG----RAFDAAMTP--------TYAYSPARARTPG 163
           A   A P      TPG  G    TP      AF AA TP        T A+  A A +P 
Sbjct: 326 ATPSASPFGAAPSTPGAFGAPASTPAFGASGAFGAAPTPSAFGAPSSTPAFGAAPASSPF 385

Query: 164 GTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP 343
           G A  PA   P G +P       +P   +  AA  +  G      S  G      +P++P
Sbjct: 386 GAA--PAAASPFGAAPSTPAFGAAPTPGAFGAAPSSGGGLFGAAPSTGGGLFGASAPSTP 443

Query: 344 G-YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
           G + A +P  GG     PAGG    AP++PA      G     +TP  A S+PG+
Sbjct: 444 GAFGASTPAPGGFGAPKPAGGLFGAAPSTPATGGLF-GASTGATTPGFAGSTPGF 497

[222][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 60/186 (32%), Positives = 82/186 (44%), Gaps = 26/186 (13%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTYA-YSPARARTPGGTAFSPAYTGPGG 202
            ARS         YT    G +TP     A M+P+ A + PA   +PGG      Y    G
Sbjct: 1405 ARSATGGLYTNSYTADFSGGKTPDHR--APMSPSGAQFYPA---SPGGAP----YENYPG 1455

Query: 203  FSPINATASFSPI-MSSADAAGRATPGRMTPGRSPAG---RFTPRM-------SPASPGY 349
              P+     FSPI + S    GR TPG M+ G+SP     R  PR+       SP+SP Y
Sbjct: 1456 DQPM-----FSPIGVDSGRDTGRWTPG-MSGGQSPYASTHRCDPRLMNKRSLRSPSSPVY 1509

Query: 350  AAMSPRFG--------------GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 487
            +     FG                   G +  + +Y+P SP+Y  TSP   YSP++P+ +
Sbjct: 1510 SMWLASFGLLQPFLIVRCFGVISPTSPGYSPTSPSYSPTSPSYTPTSP--SYSPTSPSYS 1567

Query: 488  VSSPGY 505
             +SP Y
Sbjct: 1568 PTSPSY 1573

[223][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
            RepID=A1YIA7_ISSOR
          Length = 1647

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 3/163 (1%)
 Frame = +2

Query: 26   ARSPAMPESERGYTPGREGQRTPGRAFDAAMTPTY-AYSPAR-ARTPGGTAFSPAYTGPG 199
            A SP+   +   Y P          A+    +PT  AYSP   A +P   A+SP  T P 
Sbjct: 1458 ATSPSYGPTSPSYGPTSPSYSPTSPAY----SPTSPAYSPTSPAYSPTSPAYSP--TSPA 1511

Query: 200  GFSPIN-ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG 376
             +SP + A +  SP  S    +   T    +P        +P  SP SP Y+  SP++  
Sbjct: 1512 -YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQY-- 1568

Query: 377  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                  +  +  Y+P SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1569 ------SPTSPQYSPTSPQYSPTSP--QYSPTSPQYSPTSPQY 1603

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
 Frame = +2

Query: 32   SPAMPESERGYTPGREGQRTPGRAFDA---AMTPTY-AYSPARARTPGGTAFSPAY--TG 193
            SPA   +   Y+P          A+     A +PT  +YSP    +P  +  SP+Y  T 
Sbjct: 1495 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT---SPSYSPTSPSYSPTS 1551

Query: 194  PGGFSPINATAS-FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF 370
            P  +SP + + S  SP  S        T  + +P        +P+ SP SP Y+  SP++
Sbjct: 1552 PS-YSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY 1610

Query: 371  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 505
                    +  +  Y+P SP Y  TSP   YSP++P  + +SP Y
Sbjct: 1611 --------SPTSPQYSPTSPQYSPTSP--QYSPTSPQYSPTSPSY 1645