AU193287 ( PFL043b11_r )

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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
            RepID=O04142_PORYE
          Length = 1685

 Score =  306 bits (784), Expect = 5e-82
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +3

Query: 3    AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 182
            AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML
Sbjct: 892  AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 951

Query: 183  PPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEI 362
            PPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEI
Sbjct: 952  PPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEI 1011

Query: 363  ENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            ENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA
Sbjct: 1012 ENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 1049

[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
            RepID=O09451_9FLOR
          Length = 1732

 Score =  155 bits (392), Expect = 1e-36
 Identities = 82/161 (50%), Positives = 108/161 (67%), Gaps = 3/161 (1%)
 Frame = +3

Query: 3    AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 182
            AVN++R+IWNAK+  ++  +  SDL P ++++GV +LL RTRVL   ++A ++  A E  
Sbjct: 875  AVNVDRVIWNAKQEHNIHADSVSDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPG 934

Query: 183  PPDGSASGPQDEA---LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 353
              +     P DE    +  L + AQ NATLLFQ+H+R+ LA K ++  HRLT KAF WLL
Sbjct: 935  MEEDDEGNPIDEKPTMVDPLMKEAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLWLL 994

Query: 354  IEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             E+ENRF       GE +GA AAQSIGEPATQMTLNTFHYA
Sbjct: 995  GEVENRFMMCRVAPGENIGAIAAQSIGEPATQMTLNTFHYA 1035

[3][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score =  151 bits (381), Expect = 3e-35
 Identities = 85/171 (49%), Positives = 109/171 (63%), Gaps = 13/171 (7%)
 Frame = +3

Query: 3    AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLT-------------SD 143
            AVNI+RLIWN K +F++RQ+  SDL+P  I++GV++LL R  V+               D
Sbjct: 951  AVNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGD 1010

Query: 144  EDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHR 323
            + AEVD                 +   ++L+  AQ NATLL+ +H+RA LASKV+L E+R
Sbjct: 1011 QVAEVDT----------------NSVSRQLAVEAQENATLLWSIHIRAFLASKVILKEYR 1054

Query: 324  LTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            L +KAF  LL EIENRF  A  P GEM+GA A QSIGEPATQMTLNTFH+A
Sbjct: 1055 LDKKAFMHLLGEIENRFLHAKCPPGEMIGAVAPQSIGEPATQMTLNTFHFA 1105

[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
            uvarioides RepID=Q9AXN1_9FLOR
          Length = 1712

 Score =  147 bits (371), Expect = 4e-34
 Identities = 79/158 (50%), Positives = 108/158 (68%)
 Frame = +3

Query: 3    AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 182
            AVNI+R+IWNAK+  ++R +  SDL+P ++ +G+++LL RTRV+   +D + + +   + 
Sbjct: 876  AVNIDRIIWNAKQAHNIRPDSVSDLTPVQVWKGIKMLLKRTRVVEIGDDQDDEDVDDGVT 935

Query: 183  PPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEI 362
              +G     +  A     ET Q NAT++FQ+HVR+ LA K V+  HRL   AF W+L EI
Sbjct: 936  DENGEMIDRKPVADPLTLET-QENATMIFQIHVRSMLACKQVMVRHRLDINAFLWILGEI 994

Query: 363  ENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            ENRF  A+A  GE +GA AAQSIGEPATQMTLNTFHYA
Sbjct: 995  ENRFLGAIAAPGENIGAIAAQSIGEPATQMTLNTFHYA 1032

[5][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score =  140 bits (353), Expect = 4e-32
 Identities = 80/157 (50%), Positives = 99/157 (63%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++IF +     SDL P  I++GV LL  +  V+  ++   V+A       
Sbjct: 968  VNLKRLIWNAQKIFHIDVRKPSDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEA------- 1020

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                Q NAT+LFQ+ VR+ LASK VL+E+RLT  AF WLL EIE
Sbjct: 1021 --------------------QANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLLGEIE 1060

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF QA+A  GEMVGA AAQSIGEPATQMTLNTFHYA
Sbjct: 1061 SRFLQAIANPGEMVGAIAAQSIGEPATQMTLNTFHYA 1097

[6][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
            RepID=Q84KP6_CYAME
          Length = 1819

 Score =  137 bits (346), Expect = 3e-31
 Identities = 79/157 (50%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLI N + IF ++ +  SDL P +I++GV +LL R  V+  D+             
Sbjct: 972  VNVQRLIQNCRSIFGIQHDTLSDLHPRQIIQGVRVLLQRCVVVPGDD------------- 1018

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          ELS  AQ NA LLF  HVRA LA+K VL  HRL  KAF WLL EIE
Sbjct: 1019 --------------ELSREAQRNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLLGEIE 1064

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             RF +A A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1065 TRFVRARATPGEMVGAVAAQSLGEPATQMTLNTFHFA 1101

[7][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score =  135 bits (339), Expect = 2e-30
 Identities = 73/157 (46%), Positives = 99/157 (63%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            V + RLIWN++++F V    ++DLSP K++  ++ L  R  V+  ++             
Sbjct: 981  VKLSRLIWNSQKMFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGED------------- 1027

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          +LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E
Sbjct: 1028 --------------KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVE 1073

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF  A A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1074 SRFNLAQAQPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[8][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score =  135 bits (339), Expect = 2e-30
 Identities = 73/157 (46%), Positives = 99/157 (63%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            V + RLIWN++++F V    ++DLSP K++  ++ L  R  V+  ++             
Sbjct: 982  VKLSRLIWNSQKMFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGED------------- 1028

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          +LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF WLL E+E
Sbjct: 1029 --------------KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEVE 1074

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF  A A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 SRFNLAQAQPGEMVGALAAQSLGEPATQMTLNTFHYA 1111

[9][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
           dermatitica RepID=A9QMG4_9PELO
          Length = 478

 Score =  132 bits (332), Expect = 1e-29
 Identities = 71/156 (45%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     S L+P K+V GV+ L H+  ++  D+              
Sbjct: 173 NLQRLIWNAQKIFKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD-------------- 218

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK +  +HRL  + F WLL EIE+
Sbjct: 219 -------------RISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEH 265

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 266 RFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 301

[10][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
           strongyloides dermatitica RepID=A9QMF0_9PELO
          Length = 633

 Score =  132 bits (332), Expect = 1e-29
 Identities = 71/156 (45%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     S L+P K+V GV+ L H+  ++  D+              
Sbjct: 192 NLQRLIWNAQKIFKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD-------------- 237

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK +  +HRL  + F WLL EIE+
Sbjct: 238 -------------RISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGEIEH 284

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 285 RFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 320

[11][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179348F
          Length = 1862

 Score =  131 bits (330), Expect = 2e-29
 Identities = 74/156 (47%), Positives = 99/156 (63%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DL+P K+V GV+ LL +  V+ + ED             
Sbjct: 975  NLKRMIWNVQKIFHINKRGPTDLNPIKVVNGVKKLLDKC-VIVAGED------------- 1020

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         ELS+ A  NATLLFQ  VR++L +K+V    RL+ +AF WL+ EIEN
Sbjct: 1021 -------------ELSKKANKNATLLFQCLVRSTLCTKLVSENFRLSSEAFEWLVGEIEN 1067

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF+QA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1068 RFKQAQAQPGEMVGALAAQSLGEPATQMTLNTFHFA 1103

[12][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
            RepID=B4MAN9_DROVI
          Length = 1889

 Score =  131 bits (330), Expect = 2e-29
 Identities = 71/156 (45%), Positives = 98/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP +++RGV+ LL R  ++T ++              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[13][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4L732_DROMO
          Length = 1889

 Score =  131 bits (330), Expect = 2e-29
 Identities = 71/156 (45%), Positives = 98/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP +++RGV+ LL R  ++T ++              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[14][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4JXA6_DROGR
          Length = 1889

 Score =  131 bits (330), Expect = 2e-29
 Identities = 71/156 (45%), Positives = 98/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP +++RGV  LL+R  ++T ++              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVSDLLNRCVIVTGND-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[15][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score =  131 bits (329), Expect = 3e-29
 Identities = 70/157 (44%), Positives = 96/157 (61%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++ F +     SD+ P +IV  ++ L  R +V+  D+D  ++A       
Sbjct: 978  VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA------- 1030

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 1031 --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 1070

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1071 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1107

[16][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q5WMZ9_ORYSJ
          Length = 1741

 Score =  131 bits (329), Expect = 3e-29
 Identities = 70/157 (44%), Positives = 96/157 (61%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++ F +     SD+ P +IV  ++ L  R +V+  D+D  ++A       
Sbjct: 925  VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA------- 977

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 978  --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 1017

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1018 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1054

[17][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q0DKN9_ORYSJ
          Length = 1834

 Score =  131 bits (329), Expect = 3e-29
 Identities = 70/157 (44%), Positives = 96/157 (61%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++ F +     SD+ P +IV  ++ L  R +V+  D+D  ++A       
Sbjct: 978  VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEA------- 1030

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 1031 --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 1070

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1071 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1107

[18][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
           RepID=A9QMS7_9BILA
          Length = 407

 Score =  131 bits (329), Expect = 3e-29
 Identities = 72/156 (46%), Positives = 98/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R++WNA++IF V     +DLSP K+++GV+ L  R  V+ S ED             
Sbjct: 191 NLDRMMWNARKIFHVETRKPTDLSPLKVIQGVKDLTSRL-VIVSGED------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                        ++S+ AQ NATLL  + +R++L SK +  +H+L  +AF WLL EIE 
Sbjct: 237 -------------KISQQAQYNATLLMNILLRSTLCSKRLAEKHKLNTEAFEWLLGEIET 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 KFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319

[19][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
            RepID=UPI0000546D90
          Length = 1972

 Score =  130 bits (328), Expect = 4e-29
 Identities = 70/156 (44%), Positives = 97/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     +DL+P+++V GV+ L  +  ++  D+              
Sbjct: 979  NLARMIWNAQKIFRINPRAPTDLNPARVVDGVKELSKKLVIVNGDD-------------- 1024

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +LS  AQ NATLLF +H+R++L SK +  E RL+ +AF WLL EIE 
Sbjct: 1025 -------------QLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIET 1071

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F Q++A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1072 KFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1107

[20][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila simulans RepID=Q1WKU2_DROSI
          Length = 746

 Score =  130 bits (328), Expect = 4e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 116 NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND-------------- 161

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 162 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 208

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 209 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 244

[21][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=O01375_9BILA
          Length = 631

 Score =  130 bits (328), Expect = 4e-29
 Identities = 72/156 (46%), Positives = 97/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF +     +DLSP +++ G+  L  +  V+ S ED             
Sbjct: 187 NLQRLIWNAQKIFKIETRKVTDLSPVRVIEGIRELSKKL-VIVSGED------------- 232

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK V S H+L  +AF WLL EIE+
Sbjct: 233 -------------RISKQAQYNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEH 279

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 280 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 315

[22][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4IK28_DROSE
          Length = 1887

 Score =  130 bits (328), Expect = 4e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[23][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
           subgroup RepID=A9YGC1_DROME
          Length = 247

 Score =  130 bits (328), Expect = 4e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 31  NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND-------------- 76

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 77  -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 123

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 124 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 159

[24][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
            RepID=A9UNH9_DROME
          Length = 1887

 Score =  130 bits (328), Expect = 4e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[25][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
            melanogaster RepID=RPB1_DROME
          Length = 1887

 Score =  130 bits (328), Expect = 4e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[26][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase n=1 Tax=Vitis
            vinifera RepID=UPI0001985649
          Length = 1848

 Score =  130 bits (327), Expect = 5e-29
 Identities = 75/157 (47%), Positives = 96/157 (61%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++ F V     SD+ P +IV  V+ L  R +V+  D     D I+ E   
Sbjct: 977  VNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME--- 1028

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ NATL F + +R++ ASK VL E+RLTR+AF W++ EIE
Sbjct: 1029 -------------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIE 1069

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1070 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1106

[27][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179338A
          Length = 1862

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +  ++DL+P K++ GV+ LL +  ++   +              
Sbjct: 975  NLKRMIWNVQKIFHINKRGQTDLNPVKVINGVKELLDKCVIVAGGD-------------- 1020

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         ELS+ A  NATLLFQ  VR++L +K+V    RL+ +AF WL+ EIEN
Sbjct: 1021 -------------ELSKKANHNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIEN 1067

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF+QA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1068 RFKQAQAQPGEMVGALAAQSLGEPATQMTLNTFHFA 1103

[28][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
          Length = 1422

 Score =  130 bits (327), Expect = 5e-29
 Identities = 71/156 (45%), Positives = 96/156 (61%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP K+++GV+ LL +  ++  D+              
Sbjct: 974  NLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDD-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA    GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[29][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7NVN7_VITVI
          Length = 1010

 Score =  130 bits (327), Expect = 5e-29
 Identities = 75/157 (47%), Positives = 96/157 (61%)
 Frame = +3

Query: 6   VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
           VN++RLIWNA++ F V     SD+ P +IV  V+ L  R +V+  D     D I+ E   
Sbjct: 214 VNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME--- 265

Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                              AQ NATL F + +R++ ASK VL E+RLTR+AF W++ EIE
Sbjct: 266 -------------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIE 306

Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 307 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 343

[30][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
            RepID=Q9XZU9_DROSU
          Length = 1889

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 97/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T  +              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[31][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
            pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
          Length = 1811

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 97/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T  +              
Sbjct: 896  NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 941

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 942  -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 988

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 989  RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1024

[32][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
            RepID=Q9XZS2_DROMD
          Length = 1889

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 97/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T  +              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[33][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
            RepID=Q9XZS1_DROGU
          Length = 1889

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 97/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T  +              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[34][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
            pseudoobscura RepID=Q29IN2_DROPS
          Length = 1889

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 97/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T  +              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[35][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila erecta RepID=Q1WKU4_DROER
          Length = 760

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 116 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 161

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 162 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 208

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 209 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 244

[36][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila orena RepID=Q1WKU3_DROOR
          Length = 750

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 116 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 161

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 162 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 208

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 209 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 244

[37][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
           Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
          Length = 766

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 116 NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 161

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 162 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 208

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 209 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 244

[38][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4PY98_DROYA
          Length = 1889

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[39][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4NDK9_DROWI
          Length = 1890

 Score =  130 bits (327), Expect = 5e-29
 Identities = 71/156 (45%), Positives = 97/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV  LL R  ++T ++              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVRGLLERCVIVTGND-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  VR++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[40][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
            RepID=B4H2R8_DROPE
          Length = 1804

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 97/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T  +              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[41][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NUC1_DROER
          Length = 1889

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[42][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MQ29_DROAN
          Length = 1889

 Score =  130 bits (327), Expect = 5e-29
 Identities = 70/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV+ LL R  ++T ++              
Sbjct: 974  NLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND-------------- 1019

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1020 -------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFA 1102

[43][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
           RepID=A9QMF6_PRIPA
          Length = 583

 Score =  130 bits (327), Expect = 5e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DLSP +++ GV  +  +  ++   ED             
Sbjct: 154 NLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGVREVSKKL-IIVGGED------------- 199

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + VR++L SK +  +HRL  +AF WLL EIE 
Sbjct: 200 -------------RISKQAQYNATLLMNILVRSTLCSKQLAEKHRLNSEAFEWLLGEIET 246

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 247 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 282

[44][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
            RepID=Q4SF83_TETNG
          Length = 1745

 Score =  130 bits (326), Expect = 6e-29
 Identities = 74/164 (45%), Positives = 99/164 (60%), Gaps = 8/164 (4%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     +DLSP ++V G+   +    +  S       +IA      
Sbjct: 856  NLARMIWNAQKIFRINTRTPTDLSPLRVVEGILSSVSLNEICCSPPFTLNISIADIQFEH 915

Query: 189  DGSASGPQDEALK--------ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 344
                SG  + + K         LS  AQ NATLLF +H+R++L SK +  E RL+ +AF 
Sbjct: 916  VFGLSGTHELSKKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFD 975

Query: 345  WLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            WLL EIE +F Q++A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 976  WLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1019

[45][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SXC0_RICCO
          Length = 1855

 Score =  130 bits (326), Expect = 6e-29
 Identities = 72/157 (45%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ RLIWNA++ F V +   SD+ P + V  V+ L  R +V+  D+   V+A       
Sbjct: 977  VNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVPGDDPLSVEA------- 1029

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                Q NATL F + +R++LASK VL ++RLTR+AF W++ EIE
Sbjct: 1030 --------------------QKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIE 1069

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1070 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1106

[46][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
           inermiformis RepID=A9QMR5_9BILA
          Length = 524

 Score =  130 bits (326), Expect = 6e-29
 Identities = 71/156 (45%), Positives = 96/156 (61%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V   ++S L+P +++ GV  +  +  V+   ED             
Sbjct: 181 NLQRLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED------------- 226

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + VR++L SK +  ++RL  +AF WLL E+E 
Sbjct: 227 -------------RISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVET 273

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 274 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 309

[47][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           regenfussi RepID=A9QMG9_9BILA
          Length = 620

 Score =  130 bits (326), Expect = 6e-29
 Identities = 68/156 (43%), Positives = 96/156 (61%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA+++F V    +++L+P +++ GV  L  +  ++  D+              
Sbjct: 183 NLQRLIWNAQKVFHVETRKQTELNPLRVIEGVRELSKKLVIVGGDD-------------- 228

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK V  +HRL ++AF WL+ EIE 
Sbjct: 229 -------------RISKQAQFNATLLMNILLRSTLCSKQVAEKHRLNQEAFEWLIGEIET 275

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 276 RFXQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 311

[48][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
           RepID=A9QMF4_9BILA
          Length = 597

 Score =  130 bits (326), Expect = 6e-29
 Identities = 71/156 (45%), Positives = 96/156 (61%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V   ++S L+P +++ GV  +  +  V+   ED             
Sbjct: 149 NLQRLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED------------- 194

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + VR++L SK +  ++RL  +AF WLL E+E 
Sbjct: 195 -------------RISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGEVET 241

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 242 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 277

[49][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
          Length = 1935

 Score =  130 bits (326), Expect = 6e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 947  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKKLSKKLVIVNGDDP------------- 993

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 994  --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1039

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1040 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1075

[50][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase II subunit A) (DNA-directed RNA polymerase III
            largest subunit) n=1 Tax=Equus caballus
            RepID=UPI0001796DD3
          Length = 1834

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[51][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
            isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
          Length = 1970

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[52][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
          Length = 1913

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[53][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2C
          Length = 1888

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[54][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2B
          Length = 1892

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 984  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1030

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1031 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1076

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1077 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1112

[55][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2A
          Length = 1896

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 984  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1030

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1031 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1076

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1077 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1112

[56][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B29
          Length = 1891

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 951  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 997

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 998  --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1043

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1044 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1079

[57][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B28
          Length = 1908

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 968  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1014

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1015 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1060

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1061 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1096

[58][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 18 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B27
          Length = 1831

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[59][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 17 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B26
          Length = 1684

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 972  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1018

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1019 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1064

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1065 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1100

[60][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 16 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B25
          Length = 1752

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 972  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1018

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1019 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1064

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1065 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1100

[61][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B24
          Length = 1924

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 984  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1030

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1031 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1076

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1077 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1112

[62][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 14 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B23
          Length = 1653

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 955  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1001

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1002 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1047

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1048 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1083

[63][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 13 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B22
          Length = 1722

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 955  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1001

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1002 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1047

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1048 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1083

[64][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B21
          Length = 1922

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[65][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B20
          Length = 1923

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 983  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1029

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1030 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1075

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1076 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1111

[66][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 10 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1F
          Length = 1840

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 978  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1024

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1025 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1070

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1071 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1106

[67][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 9 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1E
          Length = 1851

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 978  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1024

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1025 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1070

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1071 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1106

[68][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1D
          Length = 1764

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 1000 NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1046

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1047 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1092

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1093 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1128

[69][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 8 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1C
          Length = 1719

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 976  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1022

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1023 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1068

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1069 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1104

[70][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 7 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1B
          Length = 1858

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 976  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1022

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1023 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1068

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1069 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1104

[71][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1A
          Length = 1767

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 970  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1016

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1017 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1062

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1063 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1098

[72][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 5 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B19
          Length = 1693

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 968  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1014

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1015 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1060

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1061 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1096

[73][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B17
          Length = 1788

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[74][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B16
          Length = 1922

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[75][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25C
          Length = 1968

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 984  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1030

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1031 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1076

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1077 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1112

[76][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25B
          Length = 1932

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[77][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
          Length = 1970

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[78][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
            familiaris RepID=UPI0001951285
          Length = 1969

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[79][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
          Length = 1966

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[80][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q9NJN3_ARMVU
          Length = 433

 Score =  129 bits (325), Expect = 8e-29
 Identities = 70/156 (44%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N+ER+IWN ++IF + +  ++DLSP K+V GV   L +  +++ ++              
Sbjct: 139 NLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGED-------------- 184

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S  A  NATLLF   VR++L +K V  E+RLT +AF WL+ EIE 
Sbjct: 185 -------------RISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIET 231

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 232 RFNQAIANPGEMVGALAAQSLGEPATQMTLNTFHFA 267

[81][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q6JU60_ARMVU
          Length = 736

 Score =  129 bits (325), Expect = 8e-29
 Identities = 70/156 (44%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N+ER+IWN ++IF + +  ++DLSP K+V GV   L +  +++ ++              
Sbjct: 442 NLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGED-------------- 487

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S  A  NATLLF   VR++L +K V  E+RLT +AF WL+ EIE 
Sbjct: 488 -------------RISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIET 534

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 535 RFNQAIANPGEMVGALAAQSLGEPATQMTLNTFHFA 570

[82][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
          Length = 1970

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[83][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
            RepID=RPB1_MOUSE
          Length = 1970

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[84][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
            RepID=RPB1_HUMAN
          Length = 1970

 Score =  129 bits (325), Expect = 8e-29
 Identities = 72/156 (46%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[85][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B0A92
          Length = 1714

 Score =  129 bits (324), Expect = 1e-28
 Identities = 70/156 (44%), Positives = 93/156 (59%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     +DLSP ++V G   L  +  ++  D+              
Sbjct: 960  NLARMIWNAQKIFRINTRTPTDLSPLRVVEGTHELSKKLVIVNGDDP------------- 1006

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L SK +  E RL+ +AF WLL EIE 
Sbjct: 1007 --------------LSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIET 1052

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F Q++A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1053 KFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1088

[86][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9TK89_PHYPA
          Length = 1646

 Score =  129 bits (324), Expect = 1e-28
 Identities = 73/157 (46%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++IF V     SD+ P +IV  V+ L  R RV+  D+             
Sbjct: 965  VNLKRLIWNAQKIFKVDFRKPSDMHPMEIVEAVDKLQERLRVVPGDD------------- 1011

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          ++S  AQ NATL F   +R++LASK VL ++RLTR+AF W++ EIE
Sbjct: 1012 --------------QISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFDWVIGEIE 1057

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             RF  +L   GEM+G  AAQSIGEPATQMTLNTFH+A
Sbjct: 1058 TRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNTFHFA 1094

[87][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
            RepID=Q7Q3C6_ANOGA
          Length = 1878

 Score =  129 bits (324), Expect = 1e-28
 Identities = 71/156 (45%), Positives = 93/156 (59%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP K+++GV  LL R  ++   +              
Sbjct: 972  NLQRMIWNVQKIFHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTD-------------- 1017

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS+ A  NATLLFQ  VR++L +K V  E RL  +AF WL+ EIE 
Sbjct: 1018 -------------RLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIET 1064

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA    GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1065 RFQQAQCNPGEMVGALAAQSLGEPATQMTLNTFHFA 1100

[88][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
           armata SB363 RepID=A9UEE2_9BILA
          Length = 475

 Score =  129 bits (324), Expect = 1e-28
 Identities = 71/156 (45%), Positives = 96/156 (61%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DL+P +++ G+  L  +  V+ S ED             
Sbjct: 181 NLQRLIWNAQKIFHVETRKPTDLNPLRVIEGIRELSTKL-VIVSGED------------- 226

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + S H+L  +AF WLL EIE 
Sbjct: 227 -------------RISQQAQYNATLLMNILIRSTLCSKKMASTHKLNSEAFEWLLGEIET 273

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 274 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 309

[89][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
           EM434 RepID=A9QMQ7_9BILA
          Length = 398

 Score =  129 bits (324), Expect = 1e-28
 Identities = 70/156 (44%), Positives = 96/156 (61%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DL+P +++ GV  L  +  ++ S ED             
Sbjct: 191 NLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVRELSKKL-IIVSGED------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + + HRL  +AF WLL E+E 
Sbjct: 237 -------------RISKQAQYNATLLMNILIRSTLCSKKMATSHRLNSEAFEWLLGEVET 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 284 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 319

[90][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5YGY9_SORBI
          Length = 1857

 Score =  129 bits (323), Expect = 1e-28
 Identities = 70/157 (44%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++ F +     SD+ P +IV  V+ L  R +V+  D+   ++A       
Sbjct: 976  VNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDPMSIEA------- 1028

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 1029 --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 1068

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1069 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1105

[91][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=B9FZ51_ORYSJ
          Length = 1526

 Score =  129 bits (323), Expect = 1e-28
 Identities = 69/157 (43%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++ F +     SD+ P +IV  ++ L  R +V+  D+   ++A       
Sbjct: 648  VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEA------- 700

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 701  --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 740

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 741  SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 777

[92][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
            RepID=B8BAW1_ORYSI
          Length = 1449

 Score =  129 bits (323), Expect = 1e-28
 Identities = 69/157 (43%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++ F +     SD+ P +IV  ++ L  R +V+  D+   ++A       
Sbjct: 947  VNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEA------- 999

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                Q NATL F + +R++ ASK VL E+RLT++AF W++ EIE
Sbjct: 1000 --------------------QKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIE 1039

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1040 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1076

[93][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
           halicti RepID=P90678_9BILA
          Length = 631

 Score =  129 bits (323), Expect = 1e-28
 Identities = 69/156 (44%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DL+P ++++GV  +  +  ++  D+              
Sbjct: 187 NLQRLIWNAQKIFHVETRKVTDLNPVRVIQGVREVSKKLIIVGGDD-------------- 232

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S  AQ NATLL  + VR++L +K +  +H+L  +AF WLL EIE 
Sbjct: 233 -------------RISVQAQYNATLLMNILVRSTLCAKAMAEKHKLNAEAFEWLLGEIET 279

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 280 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 315

[94][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score =  128 bits (322), Expect = 2e-28
 Identities = 72/157 (45%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++IF V     SD+ P +IV  VE L  R RV+  ++             
Sbjct: 980  VNLKRLIWNAQKIFKVDLRKSSDMHPMEIVEAVENLQERLRVVPGND------------- 1026

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          ++S  AQ NATL F   +R++LASK VL ++RLTR+AF W++ E+E
Sbjct: 1027 --------------QISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFEWVIGEVE 1072

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             RF  +L   GEM+G  AAQSIGEPATQMTLNTFH+A
Sbjct: 1073 TRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNTFHFA 1109

[95][TOP]
>UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Suberites fuscus RepID=Q2N162_9METZ
          Length = 260

 Score =  128 bits (322), Expect = 2e-28
 Identities = 73/157 (46%), Positives = 96/157 (61%)
 Frame = +3

Query: 6   VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
           VN+ RLIWNA++IF V    ++DL P K+V GV  L ++  ++  ++             
Sbjct: 129 VNLNRLIWNAQKIFHVDIRGQTDLHPLKVVEGVRDLSNKLIIVQGED------------- 175

Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                         ELS+ AQ NATLLF+  +R+ L +K +  EH+L  +AF W+L EIE
Sbjct: 176 --------------ELSKQAQTNATLLFKSLLRSVLCTKKMSEEHKLNLEAFEWVLGEIE 221

Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 222 TRFQQAQAQPGEMVGALAAQSLGEPATQMTLNTFHFA 258

[96][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
            RepID=UPI0000D5670C
          Length = 2007

 Score =  128 bits (321), Expect = 2e-28
 Identities = 72/156 (46%), Positives = 97/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP ++++GV  LL++  V+ + ED             
Sbjct: 978  NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLNKC-VIVAGED------------- 1023

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 1024 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIET 1070

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA    GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1071 RFQQAQVNPGEMVGALAAQSLGEPATQMTLNTFHFA 1106

[97][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5Y387_SORBI
          Length = 1874

 Score =  128 bits (321), Expect = 2e-28
 Identities = 73/157 (46%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++ F +     SD+ P +IV  ++ L  R +V+  D     DAI+ E   
Sbjct: 977  VNLKRLIWNAQKTFKIDIRTCSDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE--- 1028

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ NATL F +H+RA+ ASK VL E+RLTR+AF W++ EI 
Sbjct: 1029 -------------------AQKNATLFFNIHLRATFASKRVLREYRLTREAFEWIIDEIV 1069

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             RF Q+L    EM+G  AAQSIGEPATQMTLNTFH+A
Sbjct: 1070 WRFSQSLVAPSEMIGCVAAQSIGEPATQMTLNTFHFA 1106

[98][TOP]
>UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp.
           RepID=O01370_9BILA
          Length = 633

 Score =  128 bits (321), Expect = 2e-28
 Identities = 68/156 (43%), Positives = 97/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     ++LSP +++ GV  L  +  +++ D+              
Sbjct: 187 NLQRLIWNAQKIFKVETRKPTNLSPLRVIEGVRELSKKLIIVSGDD-------------- 232

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK +  ++RL ++ F WLL EIE+
Sbjct: 233 -------------RISQQAQYNATLLMNILLRSTLCSKQMAEKYRLNQEGFEWLLGEIEH 279

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 280 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 315

[99][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QMT2_9PELO
          Length = 488

 Score =  128 bits (321), Expect = 2e-28
 Identities = 67/156 (42%), Positives = 96/156 (61%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DL+P +++ GV  L  +  +++ D+              
Sbjct: 173 NLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD-------------- 218

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + S +RL  +AF W+L E+E 
Sbjct: 219 -------------RISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVET 265

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 266 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 301

[100][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QME0_9PELO
          Length = 633

 Score =  128 bits (321), Expect = 2e-28
 Identities = 67/156 (42%), Positives = 96/156 (61%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DL+P +++ GV  L  +  +++ D+              
Sbjct: 187 NLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD-------------- 232

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + S +RL  +AF W+L E+E 
Sbjct: 233 -------------RISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGEVET 279

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 280 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 315

[101][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score =  128 bits (321), Expect = 2e-28
 Identities = 73/157 (46%), Positives = 97/157 (61%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ RLI NA+++F++     SDL+P+ +V  +E L+ R +++ + +  E          
Sbjct: 968  VNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTE---------- 1017

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                     DE           NAT+LF + VR++ ASK VL+E RLT KAF W+  EIE
Sbjct: 1018 --------DDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIE 1069

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            ++F QALA  GEMVGA AAQSIGEPATQMTLNTFHYA
Sbjct: 1070 SKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYA 1106

[102][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF13
          Length = 1932

 Score =  127 bits (320), Expect = 3e-28
 Identities = 74/156 (47%), Positives = 96/156 (61%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  V+ + ED             
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVDGVKELSKKL-VIVNGEDP------------ 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[103][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF12
          Length = 1970

 Score =  127 bits (320), Expect = 3e-28
 Identities = 74/156 (47%), Positives = 96/156 (61%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL P K+V GV+ L  +  V+ + ED             
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHPIKVVDGVKELSKKL-VIVNGEDP------------ 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[104][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99368_SOYBN
          Length = 977

 Score =  127 bits (320), Expect = 3e-28
 Identities = 73/157 (46%), Positives = 98/157 (62%)
 Frame = +3

Query: 6   VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
           VN++RLIWNA++ F V     SD+ P +IV  ++ L  R +V+   EDA           
Sbjct: 169 VNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPG-EDA----------- 216

Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          LS+ AQ NATLLF + +R++ ASK VL E+RL+R++F W++ EIE
Sbjct: 217 ---------------LSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIE 261

Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFH+A
Sbjct: 262 SRFLQSLVVPGEMIGVVAAQSIGEPATQMTLNTFHFA 298

[105][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
           wirthi RepID=Q6GYH6_9BILA
          Length = 630

 Score =  127 bits (320), Expect = 3e-28
 Identities = 69/156 (44%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     + L+P K+++GV  L  +  ++  ++              
Sbjct: 193 NLQRLIWNAQKIFHVEMRKPTTLNPMKVIQGVRELSKKLIIVNGED-------------- 238

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + S ++L  +AF WLL EIEN
Sbjct: 239 -------------RISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDWLLGEIEN 285

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQ A+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 286 RFQSAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 321

[106][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
           RepID=A9QMG8_9BILA
          Length = 587

 Score =  127 bits (320), Expect = 3e-28
 Identities = 69/156 (44%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     ++L+P +++ GV  L  +  ++  ++              
Sbjct: 175 NLQRLIWNAQKIFHVETRKXTELNPLRVIEGVRDLSKKLVIVXGED-------------- 220

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK V  ++RL  +AF WLL EIE 
Sbjct: 221 -------------RISKQAQYNATLLMNILLRSTLCSKQVAEKYRLNSEAFEWLLGEIET 267

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 268 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 303

[107][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E658E
          Length = 1628

 Score =  127 bits (319), Expect = 4e-28
 Identities = 69/156 (44%), Positives = 93/156 (59%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     +DLSP ++V G   L  +  ++  D+              
Sbjct: 980  NLARMIWNAQKIFRINTRTPTDLSPLRVVEGTHDLSKKLVIVNGDDP------------- 1026

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS+ AQ NATLLF +H+R++L SK +  E RL+ +AF WLL EIE 
Sbjct: 1027 --------------LSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIET 1072

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F  ++A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1073 KFNHSIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1108

[108][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
           RepID=A9QMH3_9BILA
          Length = 619

 Score =  127 bits (319), Expect = 4e-28
 Identities = 69/156 (44%), Positives = 98/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RL+WNA++IF V     +DL+P +++ GV  L  +  ++ S ED             
Sbjct: 183 NLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSKKL-IIVSGED------------- 228

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                        ++S+ AQ NATLL  + VR++L SK + S+++L  +AF WLL E+E 
Sbjct: 229 -------------KISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVET 275

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 276 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 311

[109][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QME1_9BILA
          Length = 628

 Score =  127 bits (319), Expect = 4e-28
 Identities = 69/156 (44%), Positives = 97/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RL+WNA++IF V     +DL+P +++ GV  L  +  ++ S ED             
Sbjct: 184 NLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKL-IIVSGED------------- 229

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + VR++L SK + S+++L  +AF WLL E+E 
Sbjct: 230 -------------RISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVET 276

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 277 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 312

[110][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
            RepID=Q25203_9CAEN
          Length = 1343

 Score =  127 bits (318), Expect = 5e-28
 Identities = 71/156 (45%), Positives = 92/156 (58%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWNA++IF + +   SDL P  +V GV  L  R  ++  ++              
Sbjct: 896  NLQRMIWNAQKIFRIDKRKPSDLDPINVVSGVRDLCQRLTIVEGED-------------- 941

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ A  NATLL +  +R++L +K V  EHRL+  AF WLL EIE 
Sbjct: 942  -------------MISKQANENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIET 988

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 989  RFQQAQAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1024

[111][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
            RepID=O35559_CRIGR
          Length = 1970

 Score =  126 bits (317), Expect = 7e-28
 Identities = 71/156 (45%), Positives = 94/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF +     SDL   K+V GV+ L  +  ++  D+              
Sbjct: 982  NLLRMIWNAQKIFHINPRLPSDLHSIKVVEGVKELSKKLVIVNGDDP------------- 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF WLL EIE+
Sbjct: 1029 --------------LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[112][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
            RepID=Q23699_CRAGI
          Length = 1340

 Score =  126 bits (317), Expect = 7e-28
 Identities = 72/156 (46%), Positives = 94/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWNA++IF +  +  +DL P K+V GVE L  R  V+   +              
Sbjct: 893  NLQRMIWNAQKIFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGD-------------- 938

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  A  NATLLF+  +R++L +K V  E RL+ +AF WL+ E+E+
Sbjct: 939  -------------RLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVES 985

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 986  RFQQAQAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1021

[113][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
           RepID=A9QME6_9PELO
          Length = 526

 Score =  126 bits (317), Expect = 7e-28
 Identities = 70/156 (44%), Positives = 96/156 (61%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N+ RLIWNA++IF V     ++L+P++++ GV  L  +  ++ S ED             
Sbjct: 88  NLNRLIWNAQKIFKVETRKLTNLNPTRVIDGVRNLSKKL-IIVSGED------------- 133

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + S ++L  +AF WLL E+E 
Sbjct: 134 -------------RISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEWLLGEVET 180

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 181 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 216

[114][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
           RepID=P91819_ZELPU
          Length = 629

 Score =  126 bits (316), Expect = 9e-28
 Identities = 73/156 (46%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA +IF V      DL+P ++V GV  L ++  V+ S ED             
Sbjct: 184 NLKRLIWNAHKIFHVDLKKPVDLNPLRVVEGVREL-NKKLVIVSGED------------- 229

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK V   H+L  +AF W+L EIE 
Sbjct: 230 -------------RISKQAQYNATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIET 276

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 277 RFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 312

[115][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=O01364_9BILA
          Length = 633

 Score =  126 bits (316), Expect = 9e-28
 Identities = 69/156 (44%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RL+WNA++IF V     +DL+P +++ GV  L  +  V+   ED             
Sbjct: 187 NLKRLLWNAQKIFHVEMRKPTDLNPLRVIEGVRELSKKL-VIVGGED------------- 232

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + S ++L ++AF WLL E+E 
Sbjct: 233 -------------RISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDWLLGEVET 279

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQ +A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 280 RFQQPIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 315

[116][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
           RepID=A9QMG7_9BILA
          Length = 583

 Score =  126 bits (316), Expect = 9e-28
 Identities = 68/156 (43%), Positives = 94/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     S L+P +++ GV  +  +  ++  D+              
Sbjct: 174 NLQRLIWNAQKIFKVETRKPSSLNPLRVIEGVREMSKKLIIVCGDD-------------- 219

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + VR++L SK +  ++RL  +AF WLL EIE+
Sbjct: 220 -------------RISKHAQYNATLLMNILVRSTLCSKQMADKYRLNEEAFEWLLGEIEH 266

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+   GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 267 RFQQAIVQPGEMVGALAAQSLGEPATQMTLNTFHFA 302

[117][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
           RepID=A9QMF2_9PELO
          Length = 629

 Score =  126 bits (316), Expect = 9e-28
 Identities = 69/156 (44%), Positives = 94/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     + L+P ++V+GV  L  +  ++  D+              
Sbjct: 187 NLQRLIWNAQKIFKVETRKVTALNPLRVVQGVRDLSKKLIIVMGDD-------------- 232

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK +  +HRL   AF WLL EIE+
Sbjct: 233 -------------RISKQAQYNATLLVNILIRSTLCSKQMSEKHRLNESAFDWLLGEIEH 279

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+   GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 280 RFQQAIVQPGEMVGALAAQSLGEPATQMTLNTFHFA 315

[118][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
            RepID=UPI000186D846
          Length = 1885

 Score =  125 bits (315), Expect = 1e-27
 Identities = 71/156 (45%), Positives = 95/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWN ++IF + +   +DLSP +++ GV  LL +  V+ + ED             
Sbjct: 967  NLQRMIWNVQKIFHINKRAPTDLSPLRVIEGVRDLLQKC-VIVAGED------------- 1012

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS+ A  NATLLFQ  VR++L +K V  + RL+ +AF WL+ EIE 
Sbjct: 1013 -------------HLSKQANENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEWLIGEIET 1059

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA    GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1060 RFQQAQCAPGEMVGALAAQSLGEPATQMTLNTFHFA 1095

[119][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
           RepID=A9QMP5_9BILA
          Length = 474

 Score =  125 bits (315), Expect = 1e-27
 Identities = 66/156 (42%), Positives = 96/156 (61%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     + L+P ++++GV  L  +  ++  D+              
Sbjct: 180 NLQRLIWNAQKIFHVETRQPTSLNPLRVIQGVRELSEKLVIVCGDD-------------- 225

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + + ++L ++AF WLL E+E 
Sbjct: 226 -------------RISKQAQYNATLLMNILLRSTLCSKKMATTYKLNQEAFEWLLGEVET 272

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 273 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 308

[120][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QMP3_9BILA
          Length = 406

 Score =  125 bits (315), Expect = 1e-27
 Identities = 66/156 (42%), Positives = 96/156 (61%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RL+WNA++IF V     +DL+P +++ GV  L  +  +++ +               
Sbjct: 191 NLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKLIIVSGEN-------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + VR++L SK + S+++L  +AF WLL E+E 
Sbjct: 237 -------------RISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGEVET 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 284 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 319

[121][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
           RepID=A9QMH1_9BILA
          Length = 616

 Score =  125 bits (315), Expect = 1e-27
 Identities = 71/156 (45%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V      DL+P +++ GV  L  +  ++ S ED             
Sbjct: 191 NLKRLIWNAQKIFHVDLRKTVDLNPVRVIEGVRELSKKL-IIVSGED------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK V   H+L  +AF W+L EIE 
Sbjct: 237 -------------RISKQAQYNATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGEIET 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319

[122][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QMG0_OSCTI
          Length = 629

 Score =  125 bits (315), Expect = 1e-27
 Identities = 69/156 (44%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V   + + L+P  ++RGV+ L  +  ++   ED             
Sbjct: 191 NLQRLIWNAQKIFHVETREVTSLNPLAVIRGVKNLSDKL-IIVGGED------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S  AQ NATLL  + +R++L SK + + H+L ++AF WLL EIE 
Sbjct: 237 -------------RISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIET 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+ A+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFKSAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319

[123][TOP]
>UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QME4_OSCTI
          Length = 446

 Score =  125 bits (315), Expect = 1e-27
 Identities = 69/156 (44%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V   + + L+P  ++RGV+ L  +  ++   ED             
Sbjct: 13  NLQRLIWNAQKIFHVETREVTSLNPLAVIRGVKNLSDKL-IIVGGED------------- 58

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S  AQ NATLL  + +R++L SK + + H+L ++AF WLL EIE 
Sbjct: 59  -------------RISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGEIET 105

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+ A+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 106 RFKSAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 141

[124][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
            RepID=Q17085_ARTSA
          Length = 1341

 Score =  125 bits (314), Expect = 1e-27
 Identities = 72/156 (46%), Positives = 97/156 (62%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWNA++ F + +   SDLSP ++++GV  LL +  V+ + ED             
Sbjct: 894  NLQRMIWNAQKTFHINKRMPSDLSPLRVIQGVRDLL-KNCVIVNGED------------- 939

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +LS+ A  NATLLFQ  VR++L +K +  E+RL  +AF WL+ EIE 
Sbjct: 940  -------------KLSKQANENATLLFQCLVRSTLCTKRLADEYRLNTEAFEWLIGEIET 986

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQ A A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 987  RFQLAQAVPGEMVGAIAAQSLGEPATQMTLNTFHFA 1022

[125][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score =  125 bits (314), Expect = 1e-27
 Identities = 75/156 (48%), Positives = 90/156 (57%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            NI RLIWNA+ +  +  N  S+L P +IVR V  LL R  V+T ++              
Sbjct: 905  NIRRLIWNARNMAKISHNTLSNLRPEEIVRDVNDLLSRCIVITGEDG------------- 951

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NATLLF + VR  LA+K V +EHRL R AF WL+ EIE+
Sbjct: 952  --------------LSTMAQHNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLIGEIES 997

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF+ A     EMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 998  RFKAAKVNPAEMVGTIAAQSIGEPATQMTLNTFHFA 1033

[126][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
            thaliana RepID=RPB1_ARATH
          Length = 1840

 Score =  125 bits (314), Expect = 1e-27
 Identities = 72/157 (45%), Positives = 94/157 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VNI+R IWNA++ F +     SD+ P +IV  V+ L  R  V+  D+             
Sbjct: 979  VNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDD------------- 1025

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           LS  AQ NATL F + +R++LASK VL E++L+R+AF W++ EIE
Sbjct: 1026 --------------ALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIE 1071

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1072 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1108

[127][TOP]
>UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7R1R2_VITVI
          Length = 429

 Score =  125 bits (313), Expect = 2e-27
 Identities = 72/157 (45%), Positives = 97/157 (61%)
 Frame = +3

Query: 6   VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
           VN++RLIWNA++ F +     SD+   +IV  V+ L  R +V+  D     D I+ E   
Sbjct: 234 VNLKRLIWNAQKTFKIDLRRPSDMHLMEIVEAVDKLQERLKVVPGD-----DLISME--- 285

Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                              AQ NATLLF + +R++ +SK VL+E+RL+R+AF W++ EIE
Sbjct: 286 -------------------AQKNATLLFNILLRSTFSSKRVLNEYRLSREAFDWVIGEIE 326

Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           +RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYA
Sbjct: 327 SRFLQSLVSPGEMIGCIAAQSIGEPATQMTLNTFHYA 363

[128][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
           dolichuroides RepID=A9QMG1_9BILA
          Length = 629

 Score =  125 bits (313), Expect = 2e-27
 Identities = 67/156 (42%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V + +   L+P  ++RGV  L  +  ++  D+              
Sbjct: 194 NLQRLIWNAQKIFHVEKREPVCLNPLNVIRGVRSLSEKLIIVGGDD-------------- 239

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L +K + + H+L ++AF WLL EIE 
Sbjct: 240 -------------RISKQAQYNATLLMNILLRSTLCAKKMATTHKLNQEAFEWLLGEIET 286

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+ A+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 287 RFKAAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 322

[129][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
           RepID=Q6E228_9BILA
          Length = 621

 Score =  124 bits (312), Expect = 3e-27
 Identities = 67/156 (42%), Positives = 97/156 (62%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DL+P +++ G++ L  +  ++ S ED             
Sbjct: 191 NLQRLIWNAQKIFHVETRKPTDLNPLRVIDGIKELSSKL-IIVSGED------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + S ++L  ++F WL+ EIE 
Sbjct: 237 -------------RISQQAQYNATLLMNILIRSTLCSKKMASTYKLNAESFEWLIGEIET 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 284 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 319

[130][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
            RepID=C3ZES3_BRAFL
          Length = 1934

 Score =  124 bits (312), Expect = 3e-27
 Identities = 69/156 (44%), Positives = 91/156 (58%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF V     +DL P K+V GV  L  +  ++  D+   + A        
Sbjct: 978  NLARIIWNAQKIFHVNTRAPTDLHPIKVVEGVRDLSRKLVIVKGDDPISIQA-------- 1029

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                               Q NAT+LF   +R++L ++ VL E RL+ +AF WLL EIE+
Sbjct: 1030 -------------------QANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIES 1070

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF QA+   GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1071 RFNQAIVQPGEMVGALAAQSLGEPATQMTLNTFHYA 1106

[131][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
           RepID=A9QMF1_9PELO
          Length = 605

 Score =  124 bits (312), Expect = 3e-27
 Identities = 68/156 (43%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     S L+P K+V GV  L  +  ++  ++              
Sbjct: 168 NLQRLIWNAQKIFKVETRKASSLNPLKVVSGVRELSKKLIIVCGED-------------- 213

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK +  ++RL  + F WLL EIE+
Sbjct: 214 -------------RISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEH 260

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 261 RFNQAVAQPGEMVGALAAQSLGEPATQMTLNTFHFA 296

[132][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
          Length = 1943

 Score =  124 bits (312), Expect = 3e-27
 Identities = 68/156 (43%), Positives = 96/156 (61%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWNA++IF V     +DL+P +++ GV+ L  +  V+ S ED             
Sbjct: 1047 NLQRMIWNAQKIFRVELRKPTDLNPLRVIEGVKELSKKL-VIVSGED------------- 1092

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S+ AQ NATLL  + +R++L +K +  +HRL  + F WL+ EIE+
Sbjct: 1093 -------------RISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIES 1139

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF+QA+   GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1140 RFKQAIVQPGEMVGAIAAQSLGEPATQMTLNTFHYA 1175

[133][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score =  124 bits (312), Expect = 3e-27
 Identities = 68/157 (43%), Positives = 99/157 (63%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N+ RL+ NA++IF V     +DLSP++++ G+  +L R  V+  D     D I+RE   
Sbjct: 970  MNVARLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE--- 1021

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ+NATLLF++H+R+ L SK+V+ +H + ++A+ W+L EIE
Sbjct: 1022 -------------------AQMNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIE 1062

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +F +++A  GEM G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1063 GQFARSVANPGEMCGTLAAQSIGEPATQMTLNTFHYA 1099

[134][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
            RepID=UPI000186501C
          Length = 1956

 Score =  124 bits (311), Expect = 3e-27
 Identities = 69/156 (44%), Positives = 91/156 (58%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+IWNA++IF V     +DL P K+V GV  L  +  ++  D+   + A        
Sbjct: 978  NLARIIWNAQKIFHVNTRAPTDLHPIKVVEGVRDLSKKLVIVKGDDPISIQA-------- 1029

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                               Q NAT+LF   +R++L ++ VL E RL+ +AF WLL EIE+
Sbjct: 1030 -------------------QANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIES 1070

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF QA+   GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1071 RFNQAIVQPGEMVGALAAQSLGEPATQMTLNTFHYA 1106

[135][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
            RepID=B7PJA3_IXOSC
          Length = 1937

 Score =  124 bits (310), Expect = 4e-27
 Identities = 70/156 (44%), Positives = 94/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R++WNA++IF V     +DLSP ++V+GVE L+ +  ++  ++              
Sbjct: 982  NLQRMLWNAQKIFRVNLRSPTDLSPLRVVQGVEELVKKLVIVPGED-------------- 1027

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  A  NATLLF+  +RA+L SK V  E RL+ ++F WLL EIE 
Sbjct: 1028 -------------HLSIQANENATLLFRSLLRATLCSKRVAEEFRLSTESFEWLLGEIET 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF Q+    GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1075 RFHQSQGQPGEMVGALAAQSLGEPATQMTLNTFHYA 1110

[136][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
            RepID=A8N128_COPC7
          Length = 1642

 Score =  123 bits (308), Expect = 7e-27
 Identities = 69/157 (43%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RL+ NA +IF + +   SDL P+ IV  +  L  R  ++  D+             
Sbjct: 912  VNLQRLVQNASQIFHIDRRKPSDLDPAYIVDSIHELGKRLVIVRGDD------------- 958

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           LS+ AQ N+TLLF++H+RA+ A++ V+ + RLTR+AF W+L EIE
Sbjct: 959  --------------PLSKEAQDNSTLLFRMHLRATFAARKVIEQMRLTREAFEWILGEIE 1004

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +F Q++A  GEM G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1005 TKFNQSIAHPGEMCGTLAAQSIGEPATQMTLNTFHYA 1041

[137][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
           RepID=A9QMF9_9BILA
          Length = 618

 Score =  122 bits (307), Expect = 1e-26
 Identities = 66/156 (42%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWN ++IF V     + L+P K++ GV+ L  +  +++ D+              
Sbjct: 182 NLQRLIWNXQKIFRVETRKPTSLNPLKVISGVQELSKKLIIVSGDDS------------- 228

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + S ++L  +AF WLL E+E 
Sbjct: 229 --------------ISKQAQYNATLLMNILLRSTLCSKRMASMYKLNSEAFEWLLGEVET 274

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 275 RFKQAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 310

[138][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
           mediterranea RepID=A9QME7_9PELO
          Length = 618

 Score =  122 bits (307), Expect = 1e-26
 Identities = 65/156 (41%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DLSP +++ GV  +  +  ++  ++              
Sbjct: 188 NLQRLIWNAQKIFHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED-------------- 233

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK +   ++L  +AF WLL E+E 
Sbjct: 234 -------------RISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEWLLGEVET 280

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A  GEMVG  AAQS+GEPATQMTLNTFHYA
Sbjct: 281 RFKQAIAQPGEMVGPLAAQSLGEPATQMTLNTFHYA 316

[139][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8Q5I6_MALGO
          Length = 1607

 Score =  122 bits (307), Expect = 1e-26
 Identities = 69/157 (43%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +NI RL+ NA++IF +     SDLSP +IV G++ +L+   V+  D+             
Sbjct: 763  LNIARLVLNAQQIFHIDPRKPSDLSPFEIVDGLKRVLNNLLVVRGDD------------- 809

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          ++S   Q NATLLF++H+R+ L SK V+  H LTR+A+ W+L EIE
Sbjct: 810  --------------KISRVMQENATLLFKIHLRSFLCSKQVIEVHHLTREAWEWVLGEIE 855

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +F +++A  GEM G  AAQSIGEPATQMTLNTFHYA
Sbjct: 856  GQFARSVAQPGEMCGTLAAQSIGEPATQMTLNTFHYA 892

[140][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            elegans RepID=RPB1_CAEEL
          Length = 1852

 Score =  122 bits (307), Expect = 1e-26
 Identities = 68/156 (43%), Positives = 96/156 (61%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++RLIWNA++IF V      +LSP  ++ GV  L  +  +++ ++              
Sbjct: 972  NLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGND-------------- 1017

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         E+S+ AQ NATLL  + +R++L +K + ++ +L  +AF WLL EIE+
Sbjct: 1018 -------------EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIES 1064

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1065 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 1100

[141][TOP]
>UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
            RepID=Q1L5Y7_ANTMA
          Length = 780

 Score =  122 bits (306), Expect = 1e-26
 Identities = 72/154 (46%), Positives = 92/154 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VNI RL+ NA++ F V     SD+ P +IV  V+ L  R +V+  D+             
Sbjct: 654  VNIRRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVVGDD------------- 700

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           LS  AQ NATL F + +R++LASK VL E+RLTR+AF W++ EIE
Sbjct: 701  --------------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIE 746

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTF 467
            +RF Q+L  AGEM+G  AAQSIGEPATQMTLNTF
Sbjct: 747  SRFLQSLVAAGEMIGCVAAQSIGEPATQMTLNTF 780

[142][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
           RepID=Q6E233_CAERE
          Length = 611

 Score =  122 bits (306), Expect = 1e-26
 Identities = 67/156 (42%), Positives = 95/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V      +LSP  ++ GV  L  +  +++ ++              
Sbjct: 174 NLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGND-------------- 219

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                        E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL E+E+
Sbjct: 220 -------------EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVES 266

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 267 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 302

[143][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
           RepID=Q6E231_CAEBE
          Length = 596

 Score =  122 bits (306), Expect = 1e-26
 Identities = 68/156 (43%), Positives = 94/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V      +LSP  ++ GV  L  +  +++ ++              
Sbjct: 166 NLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGND-------------- 211

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                        E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE 
Sbjct: 212 -------------EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIET 258

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 259 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 294

[144][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           plicata RepID=Q6E226_9PELO
          Length = 636

 Score =  122 bits (306), Expect = 1e-26
 Identities = 67/156 (42%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V      DLSP  ++ GV  +  +  +++ ++D             
Sbjct: 191 NLQRLIWNAQKIFKVDTRKPVDLSPLHVIDGVREISSKLIIVSGNDD------------- 237

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S  AQ NATLL  + +R++L SK + +  +L  +AF WLL E+E+
Sbjct: 238 --------------ISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDWLLGEVES 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFNQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319

[145][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMP7_9BILA
          Length = 440

 Score =  122 bits (306), Expect = 1e-26
 Identities = 67/156 (42%), Positives = 92/156 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DL P +++ GV  +  +  ++   ED             
Sbjct: 146 NLQRLIWNAQKIFHVETRKPTDLHPLRVIEGVRDMAKKL-IIVGGED------------- 191

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + VR++L SK +   ++L  +AF WLL E+E 
Sbjct: 192 -------------RISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVET 238

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVG  AAQS+GEPATQMTLNTFH+A
Sbjct: 239 RFQQAIAQPGEMVGPLAAQSLGEPATQMTLNTFHFA 274

[146][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMF5_9BILA
          Length = 630

 Score =  122 bits (306), Expect = 1e-26
 Identities = 67/156 (42%), Positives = 92/156 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DL P +++ GV  +  +  ++   ED             
Sbjct: 183 NLQRLIWNAQKIFHVETRKPTDLHPLRVIEGVRDMAKKL-IIVGGED------------- 228

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + VR++L SK +   ++L  +AF WLL E+E 
Sbjct: 229 -------------RISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGEVET 275

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVG  AAQS+GEPATQMTLNTFH+A
Sbjct: 276 RFQQAIAQPGEMVGPLAAQSLGEPATQMTLNTFHFA 311

[147][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
           RepID=A9QMF3_9BILA
          Length = 626

 Score =  122 bits (306), Expect = 1e-26
 Identities = 65/156 (41%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     + L+P +++ GV  +  +  +++ D+              
Sbjct: 187 NLQRLIWNAQKIFKVETRKVTALNPLRVIEGVRNVSKKLVIVSGDD-------------- 232

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK +  +H+L  + F WLL EIE 
Sbjct: 233 -------------RISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGEIET 279

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQ A+A  GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 280 RFQLAIAQPGEMVGALAAQSLGEPATQMTLNTFHFA 315

[148][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            briggsae RepID=RPB1_CAEBR
          Length = 1853

 Score =  122 bits (306), Expect = 1e-26
 Identities = 68/156 (43%), Positives = 94/156 (60%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++RLIWNA++IF V      +LSP  ++ GV  L  +  +++ ++              
Sbjct: 976  NLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGND-------------- 1021

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE 
Sbjct: 1022 -------------EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIET 1068

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1069 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 1104

[149][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
            RepID=B0DB45_LACBS
          Length = 1742

 Score =  122 bits (305), Expect = 2e-26
 Identities = 70/157 (44%), Positives = 91/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R++ NA +IF + +   SDL P  IV GV  L  R  V+  D+             
Sbjct: 965  VNLHRIVQNAIQIFHIDRRKPSDLEPGYIVDGVNELCGRLVVVRGDD------------- 1011

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           LS  AQLNATL F++H+RA+ AS+ VL +  LTR+AF W++ E+E
Sbjct: 1012 --------------PLSREAQLNATLTFRMHLRATFASRRVLEKFHLTREAFDWVMGEVE 1057

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +F Q++   GEM G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1058 TKFNQSVVHPGEMCGTLAAQSIGEPATQMTLNTFHYA 1094

[150][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=A9QMG6_9BILA
          Length = 633

 Score =  121 bits (304), Expect = 2e-26
 Identities = 68/156 (43%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF +     +DLSP +++ G+  L  +  V+ S ED             
Sbjct: 191 NLQRLIWNAQKIFKIETRKVTDLSPVRVIEGIRELSKKL-VIVSGED------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK V S H+L  +AF WLL EIE+
Sbjct: 237 -------------RISKQAQYNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGEIEH 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A      GA AAQS+GEPATQMTLNTFH+A
Sbjct: 284 RFKQAIAXXXXXXGALAAQSLGEPATQMTLNTFHFA 319

[151][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
           RepID=Q6E227_CAEJA
          Length = 608

 Score =  121 bits (303), Expect = 3e-26
 Identities = 68/156 (43%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V      +LSP  ++ GV  L  +  ++  ++              
Sbjct: 174 NLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVCGND-------------- 219

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                        E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE 
Sbjct: 220 -------------EISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGEIET 266

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 267 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 302

[152][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
            RepID=A7S8F9_NEMVE
          Length = 1929

 Score =  121 bits (303), Expect = 3e-26
 Identities = 69/157 (43%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ RLIWNA++ F +     SDL P +++ GV  L  +  V+ + ED            
Sbjct: 977  VNLSRLIWNAQKTFHITNRSASDLHPLRVIEGVRELSKKL-VIVAGED------------ 1023

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           +S+ AQ NATLLF + +R++L +K V  E  L+ +AF WLL EIE
Sbjct: 1024 --------------HISKQAQFNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIE 1069

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             RF  +    GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 1070 TRFNHSHVKPGEMVGALAAQSLGEPATQMTLNTFHYA 1106

[153][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           SB341 RepID=Q6E225_9PELO
          Length = 622

 Score =  120 bits (301), Expect = 5e-26
 Identities = 65/156 (41%), Positives = 94/156 (60%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     ++LSP  ++ GV  +  +  +++  +D             
Sbjct: 191 NLQRLIWNAQKIFKVDLRKPTNLSPLHVIEGVREVSKKLIIVSGSDD------------- 237

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + +  +L  +AF WLL E+E+
Sbjct: 238 --------------ISKQAQYNATLLMNILLRSTLCSKKMATSAKLNTEAFDWLLGEVES 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF Q++A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFMQSIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319

[154][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
            RepID=Q25151_9ANNE
          Length = 1337

 Score =  120 bits (301), Expect = 5e-26
 Identities = 68/156 (43%), Positives = 91/156 (58%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++RLIWNA++IF +     S+L P KI+  V  L  +  ++  ++              
Sbjct: 889  NLQRLIWNAQKIFRIHTRKPSNLHPVKIIEDVRELSKKFMIVKGED-------------- 934

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS+TA  NATLL  + VR++L SK V+ E  L+ +AF WL+ EIE+
Sbjct: 935  -------------RLSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEWLMGEIES 981

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +F QA    GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 982  KFIQARVQPGEMVGALAAQSLGEPATQMTLNTFHYA 1017

[155][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           JU727 RepID=A9QMQ9_9PELO
          Length = 620

 Score =  120 bits (301), Expect = 5e-26
 Identities = 67/156 (42%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V      +LSP  ++ GV  L  +  +++ ++              
Sbjct: 191 NLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGND-------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                        E+S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE 
Sbjct: 237 -------------EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIET 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQ A+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFQSAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 319

[156][TOP]
>UniRef100_UPI000187E3DF hypothetical protein MPER_04443 n=1 Tax=Moniliophthora perniciosa
           FA553 RepID=UPI000187E3DF
          Length = 343

 Score =  120 bits (300), Expect = 6e-26
 Identities = 69/157 (43%), Positives = 92/157 (58%)
 Frame = +3

Query: 6   VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
           VN+ R++ NA +IF + +   SDL P+ IV  V+ L  R  V+  ++D            
Sbjct: 166 VNLSRIVQNAVQIFHIDRRKPSDLEPAYIVDAVKALCERLIVVRGNDD------------ 213

Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          LS  AQ NATL F++H+RA+ AS+ VL +  L R+AF W+L E+E
Sbjct: 214 ---------------LSREAQDNATLRFRMHLRATFASRRVLEKFHLNREAFEWVLGEVE 258

Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           ++F Q+L   GEM G  AAQSIGEPATQMTLNTFHYA
Sbjct: 259 SKFNQSLVNPGEMCGTLAAQSIGEPATQMTLNTFHYA 295

[157][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48673
          Length = 1880

 Score =  119 bits (299), Expect = 8e-26
 Identities = 70/156 (44%), Positives = 93/156 (59%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWNA++IF +     S+L PS ++ GV  L  +  V+   EDA            
Sbjct: 976  NLDRMIWNAQQIFHINTRLPSELHPSFVLEGVRDLKKKL-VIVKGEDA------------ 1022

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S  AQ NAT L    +R++L+S  V  EH+L+ ++F WLL EIE 
Sbjct: 1023 --------------ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIET 1068

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF Q+LA AGEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1069 RFNQSLAMAGEMVGALAAQSLGEPATQMTLNTFHFA 1104

[158][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48672
          Length = 1913

 Score =  119 bits (299), Expect = 8e-26
 Identities = 70/156 (44%), Positives = 93/156 (59%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWNA++IF +     S+L PS ++ GV  L  +  V+   EDA            
Sbjct: 982  NLDRMIWNAQQIFHINTRLPSELHPSFVLEGVRDLKKKL-VIVKGEDA------------ 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S  AQ NAT L    +R++L+S  V  EH+L+ ++F WLL EIE 
Sbjct: 1029 --------------ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIET 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF Q+LA AGEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1075 RFNQSLAMAGEMVGALAAQSLGEPATQMTLNTFHFA 1110

[159][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48671
          Length = 1921

 Score =  119 bits (299), Expect = 8e-26
 Identities = 70/156 (44%), Positives = 93/156 (59%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+IWNA++IF +     S+L PS ++ GV  L  +  V+   EDA            
Sbjct: 982  NLDRMIWNAQQIFHINTRLPSELHPSFVLEGVRDLKKKL-VIVKGEDA------------ 1028

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          +S  AQ NAT L    +R++L+S  V  EH+L+ ++F WLL EIE 
Sbjct: 1029 --------------ISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIET 1074

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF Q+LA AGEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 1075 RFNQSLAMAGEMVGALAAQSLGEPATQMTLNTFHFA 1110

[160][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
           RepID=Q6E232_9PELO
          Length = 601

 Score =  119 bits (298), Expect = 1e-25
 Identities = 66/156 (42%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RL+WNA++IF V      +LSP  ++ GV  L  +  ++  ++D             
Sbjct: 174 NLQRLMWNAQKIFKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDD------------- 220

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE+
Sbjct: 221 --------------ISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGEIES 266

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 267 RFMQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 302

[161][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
           nematode RepID=O01376_9BILA
          Length = 633

 Score =  119 bits (298), Expect = 1e-25
 Identities = 66/156 (42%), Positives = 93/156 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RL+WNA++IF V      +LSP  ++ GV  L  +  ++  ++D             
Sbjct: 187 NLQRLMWNAQKIFKVDTRKPVNLSPLHVIDGVRELSKKLIIVCGNDD------------- 233

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL EIE+
Sbjct: 234 --------------ISKQAQYNATLLMNILLRSALCTKKMCTSSKLNTEAFDWLLGEIES 279

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 280 RFMQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 315

[162][TOP]
>UniRef100_A8BDP3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Priapulus
           caudatus RepID=A8BDP3_PRICU
          Length = 434

 Score =  119 bits (298), Expect = 1e-25
 Identities = 65/156 (41%), Positives = 91/156 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWNA++IF +     SDL P +++ GV  L  +  ++  ++              
Sbjct: 122 NLQRMIWNAQKIFHINTRSPSDLHPLRVIEGVRDLSKKLIIVEGED-------------- 167

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ AQ NATL     +R++L +K V  E++LT ++F WLL E+E+
Sbjct: 168 -------------RLSKQAQENATLNINAMLRSTLCTKRVAEEYKLTTESFEWLLGEVES 214

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQ A A  GEMVG  AAQS+GEPATQMTLNTFHYA
Sbjct: 215 RFQHAQAQPGEMVGPLAAQSLGEPATQMTLNTFHYA 250

[163][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
            RepID=Q30BD8_CYAPA
          Length = 1000

 Score =  119 bits (297), Expect = 1e-25
 Identities = 71/149 (47%), Positives = 91/149 (61%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++RLIWNA++I+ V  +  SDL P  I++GVELL  +  V+  ++             
Sbjct: 879  VNLKRLIWNAQKIYKVDTSKPSDLRPDIILQGVELLSTQLVVIAGEDT------------ 926

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           LS  AQ NAT LF +H+RA+LA+K VLSE+RL+  A  WLL  IE
Sbjct: 927  ---------------LSREAQENATRLFNIHLRATLATKRVLSEYRLSAAALEWLLGVIE 971

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQM 452
            +RF QA+A  GEMVGA AAQSIGEPATQM
Sbjct: 972  SRFNQAIAHPGEMVGAIAAQSIGEPATQM 1000

[164][TOP]
>UniRef100_Q6JU03 RNA polymerase II largest subunit (Fragment) n=1 Tax=Podura
           aquatica RepID=Q6JU03_9HEXA
          Length = 306

 Score =  119 bits (297), Expect = 1e-25
 Identities = 69/145 (47%), Positives = 86/145 (59%)
 Frame = +3

Query: 42  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
           IF + +   +DLSP ++V GVE LL +  V+  D+                         
Sbjct: 1   IFHINKRTYTDLSPFRVVEGVEDLLKKCIVVNGDD------------------------- 35

Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
              +S+ A  NATLLFQ  VR++L S+ V  E RLT +AF WL+ EIE RFQQAL   GE
Sbjct: 36  --PMSQKANANATLLFQCLVRSTLCSRRVAEEFRLTTEAFEWLIGEIETRFQQALVQPGE 93

Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
           MVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 94  MVGALAAQSLGEPATQMTLNTFHFA 118

[165][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
           elegans RepID=Q6JTX1_9BILA
          Length = 304

 Score =  119 bits (297), Expect = 1e-25
 Identities = 65/156 (41%), Positives = 92/156 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R++WNA++IF ++    +DL P ++V G+  L+ +  V+   ED             
Sbjct: 113 NLQRMVWNAQKIFHIKGRGTTDLHPVRVVEGLNELMKKL-VIVKGED------------- 158

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS  AQ NAT+L    +R++L SK +  E+ L  +AF WLL EIE+
Sbjct: 159 -------------RLSREAQENATILMNTMLRSTLCSKRMAEEYHLNTEAFEWLLGEIES 205

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF Q++   GEMVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 206 RFAQSMVQPGEMVGALAAQSLGEPATQMTLNTFHFA 241

[166][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
           RepID=A9QMF8_9BILA
          Length = 621

 Score =  119 bits (297), Expect = 1e-25
 Identities = 66/156 (42%), Positives = 92/156 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     +DL+P +++ GV  L  +  ++ S ED             
Sbjct: 191 NLQRLIWNAQKIFHVETRKPTDLNPIRVIEGVRELSSKL-IIVSGED------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK + S ++L  +AF WLL E+E 
Sbjct: 237 -------------RISKQAQYNATLLMNILIRSTLCSKKMASTYKLNSEAFEWLLGEVET 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+QA+A      GA AAQS+GEPATQMTLNTFHYA
Sbjct: 284 RFKQAIAXXXXXXGALAAQSLGEPATQMTLNTFHYA 319

[167][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
           RepID=Q6E223_9PELO
          Length = 606

 Score =  118 bits (296), Expect = 2e-25
 Identities = 65/156 (41%), Positives = 92/156 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RL+WNA++IF V      +LSP  ++ GV  L  +  ++   +D             
Sbjct: 174 NLQRLMWNAQKIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDD------------- 220

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL E+E+
Sbjct: 221 --------------ISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVES 266

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 267 RFMQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYA 302

[168][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
           RepID=O04144_9VIRI
          Length = 613

 Score =  117 bits (294), Expect = 3e-25
 Identities = 68/154 (44%), Positives = 92/154 (59%)
 Frame = +3

Query: 6   VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
           VNI+RLIWNA++IF +     SD++P  +V G++ L  R +V+  D     D I+RE   
Sbjct: 487 VNIKRLIWNAQKIFKIDLRKPSDMNPMDVVDGMDKLQERLKVVVGD-----DHISRE--- 538

Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                              AQ NATL F   +R++++SK VL ++RL  +AF W++ EIE
Sbjct: 539 -------------------AQKNATLFFNCLLRSTMSSKQVLKDYRLNMEAFQWVIGEIE 579

Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTF 467
            RF Q+    GEM+G  AAQSIGEPATQMTLNTF
Sbjct: 580 ARFLQSQVAPGEMIGCVAAQSIGEPATQMTLNTF 613

[169][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score =  117 bits (294), Expect = 3e-25
 Identities = 68/157 (43%), Positives = 93/157 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VNI R++ N++RIF+V ++  SDL+  +IV GV+ L  R  ++  D              
Sbjct: 962  VNIRRVVQNSQRIFNVDKSKVSDLTIPEIVEGVQSLCKRLTIVRGDSS------------ 1009

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           L++ AQ NAT+LFQ  VR+   +K V+ E+RL R AF W++ EIE
Sbjct: 1010 ---------------LAKEAQENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEWVMGEIE 1054

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +F +++   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1055 TQFAKSVVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1091

[170][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
          Length = 1752

 Score =  117 bits (294), Expect = 3e-25
 Identities = 68/157 (43%), Positives = 91/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN++R+I NA +IF +     +DL PS I+ G+  L+ +  +         D I R++  
Sbjct: 961  VNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGS-----DRITRDV-- 1013

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                Q NATLLFQ+ +R+  A K V+ E+RL + AF W++ E+E
Sbjct: 1014 --------------------QNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVE 1053

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             RFQQA+   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1054 ARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYA 1090

[171][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6JYP8_SCHJY
          Length = 1748

 Score =  117 bits (292), Expect = 5e-25
 Identities = 70/157 (44%), Positives = 89/157 (56%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I N+ +IF +     +DL PS I+ GV  L+ +  V   D              
Sbjct: 961  VNVHRIIQNSVQIFHLDSKKPTDLLPSDIIYGVRNLISKLSVFRGD-------------- 1006

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                     D   KE+ E    NATLLFQ+ +R+ LA+K V+ E+ L + AF W++ EIE
Sbjct: 1007 ---------DRITKEIQE----NATLLFQILLRSKLATKRVVMEYHLNKIAFEWIIGEIE 1053

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             RFQQ     GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1054 ARFQQCQVNPGEMVGTLAAQSIGEPATQMTLNTFHYA 1090

[172][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
           redivivus RepID=A9QMH0_PANRE
          Length = 636

 Score =  116 bits (291), Expect = 7e-25
 Identities = 64/156 (41%), Positives = 92/156 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     ++L P+ I+ GV  L  R  +++  +              
Sbjct: 192 NLQRLIWNAQKIFHVDLRKPTELHPATIIEGVRKLGDRLVIVSGTD-------------- 237

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                        ++S  AQ NATLL  + +R++ A+K V   ++LT +AF W++ EIE+
Sbjct: 238 -------------KISRQAQENATLLMNILLRSTFATKQVAEVYKLTNEAFEWIIGEIES 284

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+   GEMVG  AAQS+GEPATQMTLNTFH+A
Sbjct: 285 RFNQAIVQPGEMVGPLAAQSLGEPATQMTLNTFHFA 320

[173][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
           varius RepID=A8BDP1_PARVA
          Length = 467

 Score =  116 bits (291), Expect = 7e-25
 Identities = 64/156 (41%), Positives = 92/156 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWNA++IF +     SDL P K+VRGV+ L  +  V+                  
Sbjct: 122 NLQRIIWNAQKIFRINPRLPSDLHPLKVVRGVQELSEKLIVV------------------ 163

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                    + +  +S+ AQL+AT L    +R++L ++ V  E +L+  AF W+L EIE+
Sbjct: 164 ---------KGVDRISQRAQLDATFLMNALIRSTLCTRRVAEEFKLSSDAFDWVLGEIES 214

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF+ +L   GEMVG  +AQS+GEPATQMTLNTFHYA
Sbjct: 215 RFRSSLVDPGEMVGPLSAQSLGEPATQMTLNTFHYA 250

[174][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
            RepID=C7YI77_NECH7
          Length = 1750

 Score =  116 bits (291), Expect = 7e-25
 Identities = 66/157 (42%), Positives = 94/157 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +NI R+I +AKR+F+V+ NDRS+L PS ++  V+ LL   +++   +   V+A A     
Sbjct: 971  LNITRIIESAKRVFNVKANDRSNLRPSDVIPSVQNLLDHMKIVRGTDPISVEADA----- 1025

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                  NAT+LF+  +R+ LA K V+ EHRL + AF  ++ E++
Sbjct: 1026 ----------------------NATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGELQ 1063

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            NR+ +A    GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1064 NRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFA 1100

[175][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           drosophilae RepID=Q6E224_9PELO
          Length = 633

 Score =  116 bits (290), Expect = 9e-25
 Identities = 64/156 (41%), Positives = 91/156 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RL+WNA++IF V      +LSP  ++ GV  L  +  ++   +D             
Sbjct: 190 NLQRLMWNAQKIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDD------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L +K + +  +L  +AF WLL E+E+
Sbjct: 237 --------------ISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGEVES 282

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RF QA+A  GEMVGA AAQS+GEPA QMTLNTFHYA
Sbjct: 283 RFMQAIAQPGEMVGALAAQSLGEPAPQMTLNTFHYA 318

[176][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
            RepID=Q010D7_OSTTA
          Length = 1673

 Score =  115 bits (289), Expect = 1e-24
 Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQ--NDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREM 179
            VN++R+IWNA++ + + +      +LS + ++  V  LL +  V+   +   ++A     
Sbjct: 972  VNMKRIIWNAQKQYGMYRPGGSEEELSVTHVIESVAELLPKLIVVAGTDPLSIEA----- 1026

Query: 180  LPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIE 359
                                  Q N TLLF  HVRA+LA+K VL +H+LTR  F W++ E
Sbjct: 1027 ----------------------QRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDWVIGE 1064

Query: 360  IENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +E+RF+ ALAP G+ +G  AAQSIGEPATQMTLNTFH+A
Sbjct: 1065 VESRFKMALAPPGDGIGVVAAQSIGEPATQMTLNTFHFA 1103

[177][TOP]
>UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis
           longespiculosa RepID=A9QMG5_9BILA
          Length = 623

 Score =  115 bits (288), Expect = 2e-24
 Identities = 64/156 (41%), Positives = 90/156 (57%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V     ++LSP +++ GV  L  R  ++ S ED             
Sbjct: 191 NLQRLIWNAQKIFKVETRKTTNLSPLRVIEGVRELSKRL-IIVSGED------------- 236

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL  + +R++L SK +  +H+L ++ F WLL EIE+
Sbjct: 237 -------------RISQQAQYNATLLMNILLRSTLCSKQMAEKHKLNQEGFEWLLGEIEH 283

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA+       G  A QS+GEPATQMTLNTFH+A
Sbjct: 284 RFQQAIVXXXXXXGXLAXQSLGEPATQMTLNTFHFA 319

[178][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
            RepID=UPI000023F34A
          Length = 1758

 Score =  115 bits (287), Expect = 2e-24
 Identities = 65/157 (41%), Positives = 94/157 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +NI R+I +AKR+F+V+ NDRS+L PS ++  V+ +L   +++   +   ++A A     
Sbjct: 974  LNITRIIESAKRVFNVKANDRSNLRPSDVIPAVQNMLDNMKIVRGTDPISLEADA----- 1028

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                  NA++LF+  +R+ LA K V+ EHRL R AF  +L E++
Sbjct: 1029 ----------------------NASILFKGLLRSRLAFKEVVKEHRLNRLAFDHILGELQ 1066

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            NR+ +A    GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1067 NRWDRAFVNPGEMVGVLAAQSIGEPATQMTLNTFHFA 1103

[179][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
            RepID=A4S3M0_OSTLU
          Length = 1646

 Score =  115 bits (287), Expect = 2e-24
 Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQND--RSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREM 179
            VN++R++WNA++ + + + D    ++  + I+  V  LL +  V+   +   V+A     
Sbjct: 952  VNMKRILWNAQKQYGLYRPDSGEEEVKVTHIIESVAELLPKLIVVPGTDPLSVEA----- 1006

Query: 180  LPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIE 359
                                  Q N T+LF  HVRA+LA+K VL EH+LTR  F W++ E
Sbjct: 1007 ----------------------QRNGTMLFFAHVRANLAAKRVLKEHKLTRAGFDWVIGE 1044

Query: 360  IENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            IE+RF+ ALAP G+ +G  AAQSIGEPATQMTLNTFH+A
Sbjct: 1045 IESRFKMALAPPGDGIGTVAAQSIGEPATQMTLNTFHFA 1083

[180][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
            RepID=Q9BMP2_STYMT
          Length = 1678

 Score =  115 bits (287), Expect = 2e-24
 Identities = 64/158 (40%), Positives = 95/158 (60%)
 Frame = +3

Query: 3    AVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREML 182
            AVN+ R+IWNAK  F +R N +S+L P+ ++  ++ L+        D+ A +  +     
Sbjct: 869  AVNVPRIIWNAKEQFSIRPNQKSNLEPTYVLSRLQNLM--------DDLAPIPGVMIHKD 920

Query: 183  PPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEI 362
            P               L   A  ++T LF++++R+ L SK V+ + RL++ AF W+L EI
Sbjct: 921  P---------------LILEANSDSTWLFKIYLRSLLNSKAVIQQERLSKDAFNWILGEI 965

Query: 363  ENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            ++RF QAL   GEMVG+  AQS+GEPATQMTLNTFH+A
Sbjct: 966  KSRFDQALVNPGEMVGSIGAQSMGEPATQMTLNTFHFA 1003

[181][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R4Y0_PICPG
          Length = 1743

 Score =  114 bits (286), Expect = 3e-24
 Identities = 71/157 (45%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF + +   SDL+  +I+ GV  L  +  VL  +              
Sbjct: 960  VNLRRIIQNAQQIFHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGEN------------- 1006

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          EL + AQ NAT LFQ  VRA LA++ +L E RL R AF W+L  IE
Sbjct: 1007 --------------ELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIE 1052

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ++L   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1053 AQFQRSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1089

[182][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
            RepID=UPI0000F24379
          Length = 1739

 Score =  114 bits (285), Expect = 3e-24
 Identities = 68/157 (43%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF   +   SDL   +++ GV  L  +  V+  D              
Sbjct: 959  VNLRRIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDT------------- 1005

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          EL + AQ NATLLFQ  VR+ LAS+ V+ E +L R +F W++ EIE
Sbjct: 1006 --------------ELVKEAQANATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIE 1051

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ+++   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1052 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1088

[183][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3GID7_PICST
          Length = 1739

 Score =  114 bits (285), Expect = 3e-24
 Identities = 68/157 (43%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF   +   SDL   +++ GV  L  +  V+  D              
Sbjct: 959  VNLRRIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDT------------- 1005

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          EL + AQ NATLLFQ  VR+ LAS+ V+ E +L R +F W++ EIE
Sbjct: 1006 --------------ELVKEAQANATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIE 1051

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ+++   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1052 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1088

[184][TOP]
>UniRef100_Q9NJN1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Semibalanus
           balanoides RepID=Q9NJN1_SEMBA
          Length = 256

 Score =  114 bits (284), Expect = 4e-24
 Identities = 63/145 (43%), Positives = 87/145 (60%)
 Frame = +3

Query: 42  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
           IF +++ + +DLSP K++ GV  LL R  V+  ++                         
Sbjct: 1   IFHIKKTEPTDLSPLKVLEGVRTLLSRCVVVRGED------------------------- 35

Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
              LS+TA  NAT+LF   VR++L ++ V  E+RL+ +AF WL+ EI+ RF QA+   GE
Sbjct: 36  --RLSKTANANATILFSCLVRSTLCTRRVAEEYRLSSEAFEWLIGEIDTRFHQAMVNPGE 93

Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
           MVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 94  MVGALAAQSLGEPATQMTLNTFHFA 118

[185][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151A8B3
          Length = 1018

 Score =  113 bits (283), Expect = 6e-24
 Identities = 69/157 (43%), Positives = 90/157 (57%)
 Frame = +3

Query: 6   VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
           VN+ R+I NA+++F   ++  SDL   +IV GV+ L  +  VL  D              
Sbjct: 225 VNLRRIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSP------------ 272

Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          L + +Q NATLLFQ  VR+ LA++ V+ E RL R +F W + EIE
Sbjct: 273 ---------------LVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIE 317

Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +FQ++L   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 318 TQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 354

[186][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
            Tax=Pichia guilliermondii RepID=RPB1_PICGU
          Length = 1579

 Score =  113 bits (283), Expect = 6e-24
 Identities = 69/157 (43%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA+++F   ++  SDL   +IV GV+ L  +  VL  D              
Sbjct: 791  VNLRRIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSP------------ 838

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           L + +Q NATLLFQ  VR+ LA++ V+ E RL R +F W + EIE
Sbjct: 839  ---------------LVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGEIE 883

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ++L   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 884  TQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 920

[187][TOP]
>UniRef100_Q6JU33 RNA polymerase II largest subunit (Fragment) n=1 Tax=Limnadia
           lenticularis RepID=Q6JU33_9CRUS
          Length = 256

 Score =  113 bits (282), Expect = 8e-24
 Identities = 65/145 (44%), Positives = 87/145 (60%)
 Frame = +3

Query: 42  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
           IF + +   +DL+P ++++GV  LL +   +  ++                         
Sbjct: 1   IFHINKRMPTDLNPVRVIQGVRDLLQKCIAVPGED------------------------- 35

Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
             +LS+ A  NATLLFQ  VRA+L +K V  E+RL+ +AF WL+ EIE RF QA AP GE
Sbjct: 36  --KLSKQANENATLLFQTLVRATLCTKRVAEEYRLSSEAFEWLIGEIETRFLQAQAPPGE 93

Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
           MVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 94  MVGALAAQSLGEPATQMTLNTFHFA 118

[188][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
            castellanii RepID=O00820_ACACA
          Length = 1569

 Score =  113 bits (282), Expect = 8e-24
 Identities = 67/157 (42%), Positives = 92/157 (58%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF +     SDL P +IV  +  L+ R  V+   +D            
Sbjct: 888  VNLTRMILNAQKIFHLGPKKVSDLDPCQIVEDLGNLIERLVVIPGQDD------------ 935

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           +S+ AQ NA LLF + +R +LAS+ VL E+RL + ++ WLL EI 
Sbjct: 936  ---------------ISKEAQANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEIT 980

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF ++L   GEM+GA AAQSIGEPATQMTLNTFH+A
Sbjct: 981  DRFYKSLCDPGEMIGALAAQSIGEPATQMTLNTFHFA 1017

[189][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
            RepID=Q9BMP3_MONBE
          Length = 1743

 Score =  112 bits (281), Expect = 1e-23
 Identities = 65/157 (41%), Positives = 88/157 (56%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            V + RLI +A++ F++     +DLSP+ + + +     R  V+  D+             
Sbjct: 899  VQLRRLIISAQKEFNIDPRRPTDLSPAHVAQAIRTFTDRLVVIPGDDP------------ 946

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           LS+ AQ NATLLF  ++R+ L+S+  +  HRL  KAF W+L E+E
Sbjct: 947  ---------------LSKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVE 991

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             RF QA A  GEMVGA AAQS+GEPATQMTLNTFH A
Sbjct: 992  KRFMQAQAQPGEMVGALAAQSLGEPATQMTLNTFHLA 1028

[190][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
           RepID=A9V5W6_MONBE
          Length = 1307

 Score =  112 bits (281), Expect = 1e-23
 Identities = 65/157 (41%), Positives = 88/157 (56%)
 Frame = +3

Query: 6   VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
           V + RLI +A++ F++     +DLSP+ + + +     R  V+  D+             
Sbjct: 463 VQLRRLIISAQKEFNIDPRRPTDLSPAHVAQAIRTFTDRLVVIPGDDP------------ 510

Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          LS+ AQ NATLLF  ++R+ L+S+  +  HRL  KAF W+L E+E
Sbjct: 511 ---------------LSKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVE 555

Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF QA A  GEMVGA AAQS+GEPATQMTLNTFH A
Sbjct: 556 KRFMQAQAQPGEMVGALAAQSLGEPATQMTLNTFHLA 592

[191][TOP]
>UniRef100_Q9NJI9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tanystylum
           orbiculare RepID=Q9NJI9_9CHEL
          Length = 256

 Score =  112 bits (280), Expect = 1e-23
 Identities = 66/145 (45%), Positives = 84/145 (57%)
 Frame = +3

Query: 42  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
           IF + +   +DLSP +++ GVE L+ +  ++  D+                         
Sbjct: 1   IFHINKRAPTDLSPLRVIHGVEDLVKKLVIVPGDD------------------------- 35

Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
              LS  A  NATLLFQ  +R++L SK V  E RL+ +AF WLL EI+ RFQQA    GE
Sbjct: 36  --RLSLQANENATLLFQALLRSTLCSKKVAEEFRLSTEAFDWLLGEIDTRFQQAQVMPGE 93

Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
           MVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 94  MVGALAAQSLGEPATQMTLNTFHYA 118

[192][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           oxycercus RepID=A9QMS4_9BILA
          Length = 612

 Score =  112 bits (280), Expect = 1e-23
 Identities = 60/156 (38%), Positives = 90/156 (57%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           NI+RLIWNA++IF V   + ++LSP  ++  +  L  +  +++ D+              
Sbjct: 187 NIQRLIWNAQKIFRVDNRNPTELSPLYVIEAIRKLSEKLVIVSGDD-------------- 232

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                        ++S+ AQ NATLL  + +R++L SK V  +HRL ++AF ++L EIEN
Sbjct: 233 -------------KISQQAQYNATLLMNILIRSTLCSKQVAEKHRLNQEAFEYILGEIEN 279

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQ+A+       G   AQ +G+PATQMTLNTFHYA
Sbjct: 280 RFQRAIVXXXXXXGVLXAQXLGQPATQMTLNTFHYA 315

[193][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
            RepID=B2AA31_PODAN
          Length = 1748

 Score =  112 bits (280), Expect = 1e-23
 Identities = 65/157 (41%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +NI R+I  AK++F V    RSDL+P  ++  V+ LL R  V+  ++             
Sbjct: 974  LNIGRIIDTAKKLFKVDSTQRSDLTPKDVIPAVQALLARMVVVRGED------------- 1020

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          ELS  A  NAT+LF++ +R+ LA K +  E RL + AF  +L E+E
Sbjct: 1021 --------------ELSREADYNATILFKIQIRSRLAFKRLAVEQRLNKLAFDHVLGELE 1066

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            NR+ +++   GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1067 NRWSRSMVSPGEMVGVLAAQSIGEPATQMTLNTFHFA 1103

[194][TOP]
>UniRef100_Q6JU18 RNA polymerase II largest subunit (Fragment) n=1 Tax=Mesocyclops
           edax RepID=Q6JU18_9MAXI
          Length = 302

 Score =  112 bits (279), Expect = 2e-23
 Identities = 68/145 (46%), Positives = 85/145 (58%)
 Frame = +3

Query: 42  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
           IF + +    DLSP K++ GV  LL +  V+   ED                        
Sbjct: 1   IFHINKRHPCDLSPLKVITGVRDLLEKC-VIVKGED------------------------ 35

Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
             +LS+ A  NAT LFQ  VR++L SK+V  + RL+ +AF WLL EIE++F QA A  GE
Sbjct: 36  --KLSKQANENATTLFQCLVRSTLCSKLVAEQFRLSEEAFEWLLGEIESKFMQAQATPGE 93

Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
           MVGA AAQSIGEPATQMTLNTFH+A
Sbjct: 94  MVGAIAAQSIGEPATQMTLNTFHFA 118

[195][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb01 RepID=C1H3Q4_PARBA
          Length = 1748

 Score =  112 bits (279), Expect = 2e-23
 Identities = 67/157 (42%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++ +AK IF +R+   SDL P++++  V  LL R  V+  D     D I+RE   
Sbjct: 987  INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLDRLVVVRGD-----DVISRE--- 1038

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ +ATLLF+  +R+ LA + +++E+ L + AF  +L  IE
Sbjct: 1039 -------------------AQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAIE 1079

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            NRF +A+A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1080 NRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1116

[196][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb18 RepID=C1GHL1_PARBD
          Length = 1746

 Score =  112 bits (279), Expect = 2e-23
 Identities = 67/157 (42%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++ +AK IF +R+   SDL P++++  V  LL R  V+  D     D I+RE   
Sbjct: 981  INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLDRLVVVRGD-----DVISRE--- 1032

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ +ATLLF+  +R+ LA + +++E+ L + AF  +L  IE
Sbjct: 1033 -------------------AQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAIE 1073

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            NRF +A+A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 NRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110

[197][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb03 RepID=C0SE75_PARBP
          Length = 2106

 Score =  112 bits (279), Expect = 2e-23
 Identities = 67/157 (42%), Positives = 95/157 (60%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++ +AK IF +R+   SDL P++++  V  LL R  V+  D     D I+RE   
Sbjct: 981  INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLDRLVVVRGD-----DVISRE--- 1032

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ +ATLLF+  +R+ LA + +++E+ L + AF  +L  IE
Sbjct: 1033 -------------------AQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAIE 1073

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            NRF +A+A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 NRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110

[198][TOP]
>UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus
           RepID=B4YT40_9COLE
          Length = 562

 Score =  111 bits (278), Expect = 2e-23
 Identities = 62/146 (42%), Positives = 86/146 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +  ++DLSP ++++GV  LL +  ++  D+              
Sbjct: 444 NLQRMIWNVQKIFHINKRAQTDLSPLRVIQGVRDLLQKCVIVAGDD-------------- 489

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA    GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQCAPGEMVGALAAQSLGEPAT 562

[199][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
           RepID=A9QMR7_9BILA
          Length = 614

 Score =  111 bits (278), Expect = 2e-23
 Identities = 66/156 (42%), Positives = 87/156 (55%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++RLIWNA++IF V       LSP +++ GV  L  R  V+ S ED             
Sbjct: 177 NVQRLIWNAQKIFHVEIRRPVSLSPLRVIEGVRELTARL-VIVSGED------------- 222

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         +S+ AQ NATLL ++ +R++L S+ +  +HRL  +AF WLL E+  
Sbjct: 223 -------------HISQHAQENATLLIKILLRSTLCSRKMAEQHRLNAEAFEWLLGEVXT 269

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           RFQQA         A AAQS+GEPATQMTLNTFHYA
Sbjct: 270 RFQQAXXXXXXXXXALAAQSLGEPATQMTLNTFHYA 305

[200][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BD271
          Length = 1749

 Score =  111 bits (277), Expect = 3e-23
 Identities = 66/157 (42%), Positives = 93/157 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF   ++  SDL   ++VRGV+ L  +  V+                 
Sbjct: 964  VNLRRIIQNAQQIFHNGRHKASDLRLDEVVRGVQDLCTKLLVI----------------- 1006

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           L++ AQ NATLLFQ  +R+ LA++ V+ E +L+R +F W++ EIE
Sbjct: 1007 ----------RGKTALTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIE 1056

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ+++   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1057 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1093

[201][TOP]
>UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei
           RepID=B4YT42_AMPLE
          Length = 562

 Score =  111 bits (277), Expect = 3e-23
 Identities = 62/146 (42%), Positives = 84/146 (57%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  D+              
Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD-------------- 489

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS  A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 490 -------------RLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA    GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQCAPGEMVGALAAQSLGEPAT 562

[202][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
            RepID=B5RSM9_DEBHA
          Length = 1749

 Score =  111 bits (277), Expect = 3e-23
 Identities = 66/157 (42%), Positives = 93/157 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF   ++  SDL   ++VRGV+ L  +  V+                 
Sbjct: 964  VNLRRIIQNAQQIFHNGRHKASDLRLDEVVRGVQDLCTKLLVI----------------- 1006

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           L++ AQ NATLLFQ  +R+ LA++ V+ E +L+R +F W++ EIE
Sbjct: 1007 ----------RGKTALTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIE 1056

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ+++   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1057 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1093

[203][TOP]
>UniRef100_Q9NJL5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Metajapyx
           subterraneus RepID=Q9NJL5_9HEXA
          Length = 256

 Score =  110 bits (276), Expect = 4e-23
 Identities = 63/145 (43%), Positives = 86/145 (59%)
 Frame = +3

Query: 42  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
           IF + +   +DLSP ++++GV+ LL +  ++  D+                         
Sbjct: 1   IFHIDKRAPTDLSPLRVIQGVQELLRKCVIVAGDD------------------------- 35

Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
              LS+ A  NATLLFQ  VR++L ++ V  E RL+ +AF WL+ E+E RFQQA    GE
Sbjct: 36  --RLSKMANDNATLLFQCLVRSTLCTRRVAXEFRLSSEAFEWLIGEVETRFQQAQVXPGE 93

Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
           MVGA AAQS+GEPATQMTLNTFH+A
Sbjct: 94  MVGALAAQSLGEPATQMTLNTFHFA 118

[204][TOP]
>UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus
           complex RepID=B4YT54_9CARA
          Length = 473

 Score =  110 bits (275), Expect = 5e-23
 Identities = 64/146 (43%), Positives = 87/146 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 355 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 400

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 401 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 447

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 448 RFQQAQSAPGEMVGALAAQSLGEPAT 473

[205][TOP]
>UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion
           mandibulare RepID=B4YT49_9CARA
          Length = 562

 Score =  110 bits (275), Expect = 5e-23
 Identities = 64/146 (43%), Positives = 87/146 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQSAPGEMVGALAAQSLGEPAT 562

[206][TOP]
>UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus
           RepID=B4YT48_9CARA
          Length = 562

 Score =  110 bits (275), Expect = 5e-23
 Identities = 64/146 (43%), Positives = 87/146 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQSAPGEMVGALAAQSLGEPAT 562

[207][TOP]
>UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion
           RepID=B4YT46_9CARA
          Length = 562

 Score =  110 bits (275), Expect = 5e-23
 Identities = 64/146 (43%), Positives = 87/146 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQSAPGEMVGALAAQSLGEPAT 562

[208][TOP]
>UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense
           RepID=B4YT44_9CARA
          Length = 562

 Score =  110 bits (275), Expect = 5e-23
 Identities = 64/146 (43%), Positives = 87/146 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 490 -------------RLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 536

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQSAPGEMVGALAAQSLGEPAT 562

[209][TOP]
>UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus
           opacus RepID=B4YT36_9COLE
          Length = 629

 Score =  110 bits (275), Expect = 5e-23
 Identities = 62/146 (42%), Positives = 86/146 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++  D+              
Sbjct: 511 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLKKCIIVAGDD-------------- 556

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF WL+ EIE 
Sbjct: 557 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIET 603

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA A  GEMVGA AAQS+GEPAT
Sbjct: 604 RFQQAQANPGEMVGALAAQSLGEPAT 629

[210][TOP]
>UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus
           RepID=B3FA71_9CARA
          Length = 227

 Score =  110 bits (275), Expect = 5e-23
 Identities = 64/146 (43%), Positives = 87/146 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQSAPGEMVGALAAQSLGEPAT 227

[211][TOP]
>UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           coxendix RepID=B3FA50_9CARA
          Length = 225

 Score =  110 bits (275), Expect = 5e-23
 Identities = 64/146 (43%), Positives = 87/146 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 107 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 152

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 153 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 199

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 200 RFQQAQSAPGEMVGALAAQSLGEPAT 225

[212][TOP]
>UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium
           subgenus complex RepID=B3FA44_9CARA
          Length = 227

 Score =  110 bits (275), Expect = 5e-23
 Identities = 64/146 (43%), Positives = 87/146 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQSAPGEMVGALAAQSLGEPAT 227

[213][TOP]
>UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion
           RepID=B3FA43_9CARA
          Length = 227

 Score =  110 bits (275), Expect = 5e-23
 Identities = 64/146 (43%), Positives = 87/146 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQSAPGEMVGALAAQSLGEPAT 227

[214][TOP]
>UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           californicum RepID=B3FA42_9CARA
          Length = 227

 Score =  110 bits (275), Expect = 5e-23
 Identities = 64/146 (43%), Positives = 87/146 (59%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQSAPGEMVGALAAQSLGEPAT 227

[215][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
            RepID=Q5KGG3_CRYNE
          Length = 1786

 Score =  110 bits (275), Expect = 5e-23
 Identities = 65/157 (41%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VNI+R+I N+++IF +     SDL P  ++   + L  R  V+  D+             
Sbjct: 974  VNIQRVIQNSQQIFHIDPRVPSDLDPVYLLEQRDALADRLLVVRGDD------------- 1020

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                          +LS  AQ NATL+F + +R+ LA++ VL E+ L R+AF W++ E+E
Sbjct: 1021 --------------KLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVE 1066

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
              F +A+  A EMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1067 QIFNKAVVNAAEMVGTLAAQSIGEPATQMTLNTFHYA 1103

[216][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
           RepID=C0NEY2_AJECG
          Length = 1234

 Score =  110 bits (275), Expect = 5e-23
 Identities = 67/157 (42%), Positives = 94/157 (59%)
 Frame = +3

Query: 6   VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
           +N++R++ +AK IF +R+   SDL P++++  V  LL R  V+  D     D I+RE   
Sbjct: 468 INVQRILESAKTIFRIREGAISDLHPAEVIPQVRALLERLVVVRGD-----DVISRE--- 519

Query: 186 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                              AQ +ATLLF+  +R+ LA + ++ E+ L R AF  +L  IE
Sbjct: 520 -------------------AQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAIE 560

Query: 366 NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
           +RF +A+A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 561 SRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 597

[217][TOP]
>UniRef100_Q2N1B5 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Platynereis dumerilii RepID=Q2N1B5_PLADU
          Length = 248

 Score =  110 bits (274), Expect = 6e-23
 Identities = 57/152 (37%), Positives = 86/152 (56%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N+ RLIWNA++IF +     +DL P K+V G+  L  +  ++  ++   +DA        
Sbjct: 124 NLNRLIWNAQKIFRINIRKPTDLHPVKVVEGIRELSKKFLIVKGEDKLSIDA-------- 175

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                               +NAT+L  + +R+ L ++ ++ + RL+ +AF WLL E+E+
Sbjct: 176 -------------------NINATMLMNILIRSRLCARTIIEDDRLSSEAFEWLLGEVES 216

Query: 369 RFQQALAPAGEMVGATAAQSIGEPATQMTLNT 464
           RF QA+   GEMVG  AAQS+GEPATQMTLNT
Sbjct: 217 RFNQAMVTPGEMVGPLAAQSLGEPATQMTLNT 248

[218][TOP]
>UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii
           RepID=B4YT45_9CARA
          Length = 227

 Score =  110 bits (274), Expect = 6e-23
 Identities = 64/146 (43%), Positives = 86/146 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKYVSEEFRLSTEAFEWLIGEIET 201

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA    GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQCAPGEMVGALAAQSLGEPAT 227

[219][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
            RepID=B8BQ02_THAPS
          Length = 1627

 Score =  109 bits (273), Expect = 8e-23
 Identities = 66/156 (42%), Positives = 86/156 (55%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N++R+I NA R F + +   S+L P  ++  +E +L R  V+  D+              
Sbjct: 978  NVKRVIQNALRQFQIDKGLPSNLHPKDVIEKIEAMLRRLVVVVGDD-------------- 1023

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS  AQ NAT L+++ +R+ LASK VL E+RL+  A  W+L EIE 
Sbjct: 1024 -------------LLSVEAQNNATTLYRILIRSYLASKRVLREYRLSEAALIWVLGEIEA 1070

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF  A    GEM G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1071 RFHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYA 1106

[220][TOP]
>UniRef100_Q9BNQ3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Peripatus sp.
           Per2 RepID=Q9BNQ3_9BILA
          Length = 300

 Score =  109 bits (273), Expect = 8e-23
 Identities = 64/144 (44%), Positives = 81/144 (56%)
 Frame = +3

Query: 45  FDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 224
           F +     SDL+P +++ GV  L  R  ++  ++                          
Sbjct: 2   FHINLRTPSDLNPLRVIEGVRDLSKRLIIVPGED-------------------------- 35

Query: 225 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEM 404
             +S+ AQ NATLL  + VRA+L SK V  EH+L+ +AF WLL EIE RF QA    GEM
Sbjct: 36  -RISKQAQENATLLMNILVRATLCSKRVTKEHKLSTEAFEWLLGEIETRFAQAQGQPGEM 94

Query: 405 VGATAAQSIGEPATQMTLNTFHYA 476
           VGA AAQS+GEPATQMTLNTFHYA
Sbjct: 95  VGALAAQSLGEPATQMTLNTFHYA 118

[221][TOP]
>UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus
           melanarius RepID=B4YT39_PTEME
          Length = 227

 Score =  109 bits (273), Expect = 8e-23
 Identities = 64/146 (43%), Positives = 86/146 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLKKC-VIVAGED------------- 154

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 155 -------------RLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA    GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQCAPGEMVGALAAQSLGEPAT 227

[222][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
          Length = 1748

 Score =  109 bits (273), Expect = 8e-23
 Identities = 61/157 (38%), Positives = 94/157 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++  A+  F +R+   SDL P++++  V+ LL R  ++  D+             
Sbjct: 978  INVQRILEMARTTFRIREGTISDLHPAEVIPQVQALLDRLLIVRGDDP------------ 1025

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           +S+ AQ NATLLF+  +R+ LA + +++E+ + + AF  ++  IE
Sbjct: 1026 ---------------ISQEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIE 1070

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF +A APAGEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1071 SRFAKANAPAGEMVGVLAAQSIGEPATQMTLNTFHFA 1107

[223][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
            RepID=C5GKA7_AJEDR
          Length = 1746

 Score =  109 bits (273), Expect = 8e-23
 Identities = 66/157 (42%), Positives = 94/157 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++ +AK IF +R+   SDL P++++  +  LL R  V+  D     D I+RE   
Sbjct: 981  INVQRILESAKTIFRIREGAISDLHPAEVIPQIRALLDRLIVVRGD-----DVISRE--- 1032

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ +ATLLF+  +R+ LA + ++ E+ L R AF  +L  IE
Sbjct: 1033 -------------------AQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAIE 1073

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF +A+A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 SRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110

[224][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
            RepID=A6QYA7_AJECN
          Length = 1747

 Score =  109 bits (273), Expect = 8e-23
 Identities = 66/157 (42%), Positives = 94/157 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++ +AK IF +R+   SDL P++++  V  +L R  V+  D     D I+RE   
Sbjct: 981  INVQRILESAKTIFRIREGAISDLHPAEVIPQVRAMLERLVVVRGD-----DVISRE--- 1032

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ +ATLLF+  +R+ LA + ++ E+ L R AF  +L  IE
Sbjct: 1033 -------------------AQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAIE 1073

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF +A+A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 SRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110

[225][TOP]
>UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus
           RepID=B4YT43_9DYTI
          Length = 562

 Score =  109 bits (272), Expect = 1e-22
 Identities = 62/146 (42%), Positives = 85/146 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL R  ++   +              
Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCIIVAGTD-------------- 489

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS  A  NATLLFQ  VR++L +K V  E+RL+ +AF WL+ EIE 
Sbjct: 490 -------------RLSTLANDNATLLFQCLVRSTLCTKYVSEEYRLSTEAFEWLIGEIET 536

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA A  GEMVGA AAQS+GEPAT
Sbjct: 537 RFQQAQANPGEMVGALAAQSLGEPAT 562

[226][TOP]
>UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi
           RepID=B4YT37_9CARA
          Length = 369

 Score =  109 bits (272), Expect = 1e-22
 Identities = 62/146 (42%), Positives = 84/146 (57%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  ++   +              
Sbjct: 251 NLQRMIWNVQKIFHINKRAPTDLSPIRVIQGVRDLLQKCVIVAGKD-------------- 296

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LSE A  NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 297 -------------RLSEQANENATLLFQCLVRATLCTKCVSEEFRLSSEAFEWLIGEIET 343

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA    GEMVGA AAQS+GEPAT
Sbjct: 344 RFQQAQCAPGEMVGALAAQSLGEPAT 369

[227][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5ACI7_CANAL
          Length = 1728

 Score =  109 bits (272), Expect = 1e-22
 Identities = 67/157 (42%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF   +   SDL   +IV GV+ L  +  V+  D              
Sbjct: 959  VNLRRIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGD-------------- 1004

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           L + AQ NATLLFQ  +R+ LA++ V+ E +L R +F W++ EIE
Sbjct: 1005 -------------TPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIE 1051

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ+++   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1052 TQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYA 1088

[228][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
            albo-atrum VaMs.102 RepID=C9SR21_9PEZI
          Length = 1756

 Score =  109 bits (272), Expect = 1e-22
 Identities = 66/157 (42%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +NI R++  AK++F+V+   RSDL+P  ++  V  +L R  V+                 
Sbjct: 973  LNIVRIMETAKKLFNVQDFQRSDLTPQDVIPAVSSMLDRMTVVRG--------------- 1017

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
            PDG            LS+ A  NAT+LF+ H+R+ LA K V    RL + AF+ +L E+E
Sbjct: 1018 PDG------------LSKEADYNATILFKAHIRSRLAFKGVACLQRLNKLAFSHVLGELE 1065

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             R+ +A    GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1066 GRWAKASISPGEMVGVLAAQSIGEPATQMTLNTFHFA 1102

[229][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YN85_CANAL
          Length = 1742

 Score =  109 bits (272), Expect = 1e-22
 Identities = 67/157 (42%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF   +   SDL   +IV GV+ L  +  V+  D              
Sbjct: 959  VNLRRIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLLVVRGD-------------- 1004

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           L + AQ NATLLFQ  +R+ LA++ V+ E +L R +F W++ EIE
Sbjct: 1005 -------------TPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIE 1051

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ+++   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1052 TQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYA 1088

[230][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
            RepID=C4Y5N4_CLAL4
          Length = 1402

 Score =  109 bits (272), Expect = 1e-22
 Identities = 65/157 (41%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF   +   SDL   +IV GV+ L  +  V+                 
Sbjct: 918  VNLRRIIQNAQQIFHSGRQRASDLKLDEIVEGVKALCSKLLVIRGKS------------- 964

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           L++ AQ +ATLLFQ  VR+ LA++ ++ E +L+R +F W+  EIE
Sbjct: 965  --------------RLAKEAQEDATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGEIE 1010

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ+++   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1011 TQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYA 1047

[231][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5E6J4_LODEL
          Length = 1745

 Score =  109 bits (272), Expect = 1e-22
 Identities = 68/157 (43%), Positives = 88/157 (56%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF   ++  SDL   +IV  V  L  +  V+  D              
Sbjct: 953  VNLRRIIQNAQQIFHSGRDKPSDLRLDEIVESVRDLCTKFLVVRGD-------------- 998

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           L + AQ NATLLFQ  VR+ LAS+ V+ E +L + +F W L EIE
Sbjct: 999  -------------TPLMKEAQENATLLFQCLVRSRLASRRVIEEFKLNKASFEWALGEIE 1045

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ+++   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1046 TQFQKSVVHPGEMVGVVAAQSIGEPATQMTLNTFHYA 1082

[232][TOP]
>UniRef100_C4QEL8 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
            RepID=C4QEL8_SCHMA
          Length = 1785

 Score =  108 bits (271), Expect = 1e-22
 Identities = 64/156 (41%), Positives = 88/156 (56%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            NI RL+ NA++IF++    ++++ P ++V  V     R  V+  D+              
Sbjct: 872  NINRLVMNAQKIFEIDPLSKTNIHPRQVVEMVRETCKRLIVVPGDD-------------- 917

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                          LS+ A  NATLL    +RASL +K V+ ++RL+ +A  W+L E+  
Sbjct: 918  -------------RLSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVRA 964

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RFQQA    GEMVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 965  RFQQAHIHPGEMVGALAAQSLGEPATQMTLNTFHYA 1000

[233][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9WN64_CANDC
          Length = 1735

 Score =  108 bits (271), Expect = 1e-22
 Identities = 67/157 (42%), Positives = 89/157 (56%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R+I NA++IF   +   SDL   +I+ GV  L  +  V+  D              
Sbjct: 959  VNLRRIIQNAQQIFHNGRYRASDLRLEEIIFGVRELCKKLLVVRGDTP------------ 1006

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           L + AQ NATLLFQ  +R+ LA++ V+ E +L R +F W+L EIE
Sbjct: 1007 ---------------LVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRVSFEWVLGEIE 1051

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +FQ+++   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 1052 TQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYA 1088

[234][TOP]
>UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           levettei RepID=B3FA52_9CARA
          Length = 226

 Score =  108 bits (270), Expect = 2e-22
 Identities = 63/146 (43%), Positives = 86/146 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 108 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 153

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+    NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 154 -------------RLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 200

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 201 RFQQAQSAPGEMVGALAAQSLGEPAT 226

[235][TOP]
>UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           bifossulatum RepID=B3FA46_9CARA
          Length = 227

 Score =  108 bits (270), Expect = 2e-22
 Identities = 63/146 (43%), Positives = 86/146 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+    NATLLFQ  VRA+L +K V  E RL+ +AF WL+ EIE 
Sbjct: 155 -------------RLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIET 201

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 202 RFQQAQSAPGEMVGALAAQSLGEPAT 227

[236][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
            RepID=C4JY44_UNCRE
          Length = 1747

 Score =  108 bits (270), Expect = 2e-22
 Identities = 66/157 (42%), Positives = 93/157 (59%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++ +AK  F +R+   SDL P++++  V+ LL R  V+  D     D I++E   
Sbjct: 933  INVQRILESAKTTFRIREGTISDLHPAEVIPQVQALLERLVVVRGD-----DIISKE--- 984

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ NATLLF+  +R+ LA K ++ E+ L + AF  +L  IE
Sbjct: 985  -------------------AQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAIE 1025

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF +A A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1026 SRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1062

[237][TOP]
>UniRef100_Q9BNA4 RNA polymerase II largest subunit (Fragment) n=1 Tax=solifugid
           'Sol' RepID=Q9BNA4_9ARAC
          Length = 256

 Score =  108 bits (269), Expect = 2e-22
 Identities = 64/145 (44%), Positives = 84/145 (57%)
 Frame = +3

Query: 42  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
           IF V    ++DLSP + ++GVE L+ +  ++  ++                         
Sbjct: 1   IFHVNTRAQTDLSPLRTIKGVEELVKKLIIVPGED------------------------- 35

Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
              LS  A  NATLLF+  +R++L +K V  E RL+ +AF WLL EIE +FQQA    GE
Sbjct: 36  --RLSIQANDNATLLFRALLRSTLCAKRVSEEFRLSTEAFDWLLEEIETKFQQAQGQPGE 93

Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
           MVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 94  MVGALAAQSLGEPATQMTLNTFHYA 118

[238][TOP]
>UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           balli RepID=B3FA45_9CARA
          Length = 220

 Score =  107 bits (268), Expect = 3e-22
 Identities = 63/146 (43%), Positives = 86/146 (58%)
 Frame = +3

Query: 9   NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
           N++R+IWN ++IF + +   +DLSP ++++GV  LL +  V+ + ED             
Sbjct: 102 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 147

Query: 189 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +A  WL+ EIE 
Sbjct: 148 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAXEWLIGEIET 194

Query: 369 RFQQALAPAGEMVGATAAQSIGEPAT 446
           RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 195 RFQQAQSAPGEMVGALAAQSLGEPAT 220

[239][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
            RepID=B3RM26_TRIAD
          Length = 1784

 Score =  107 bits (267), Expect = 4e-22
 Identities = 68/157 (43%), Positives = 86/157 (54%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ RLIWNA++IF V     SDL P K++  V   L R  V+   ED            
Sbjct: 969  VNLNRLIWNAQKIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED------------ 1015

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           +S+ AQ NATLLF + +R+ L+SK V  E+ LT +AF WL+ E++
Sbjct: 1016 --------------RISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEVQ 1061

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
                      GEMVG  AAQS+GEPATQMTLNTFHYA
Sbjct: 1062 ---------PGEMVGPLAAQSLGEPATQMTLNTFHYA 1089

[240][TOP]
>UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
            RepID=Q2HDK0_CHAGB
          Length = 1756

 Score =  107 bits (267), Expect = 4e-22
 Identities = 61/157 (38%), Positives = 91/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +NI R+I  AK++F V  + RSDL+P+ ++  V+ LL R  V+   +             
Sbjct: 975  LNIARIIETAKKLFKVDDSQRSDLTPNDVIPVVKALLERMIVVRGSDP------------ 1022

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           +S+ A  N+T+LF++ +R+ LA K +  E R+ + AF  +L E+E
Sbjct: 1023 ---------------ISKEADYNSTILFKIQLRSRLAYKRLAVEQRINKLAFEHILGELE 1067

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            NR+ +++   GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1068 NRWSRSMVAPGEMVGVLAAQSIGEPATQMTLNTFHFA 1104

[241][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
            tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
          Length = 1706

 Score =  107 bits (266), Expect = 5e-22
 Identities = 62/156 (39%), Positives = 88/156 (56%)
 Frame = +3

Query: 9    NIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPP 188
            N+ R+I NA R F + ++  +DL P+++++ V  LL R  V+  ++   V+A        
Sbjct: 916  NVRRVIHNAMRQFRIDKSKPTDLHPTEVIQIVNNLLERLIVVVGNDPLSVEA-------- 967

Query: 189  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIEN 368
                               Q NAT L+++ +R  L+SK VL + RL++ A  W++ EIE 
Sbjct: 968  -------------------QSNATTLYRILIRTMLSSKRVLKDWRLSKAALNWVVGEIET 1008

Query: 369  RFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            RF  A+   GEM G  AAQSIGEPATQMTLNTFHYA
Sbjct: 1009 RFNIAMVNPGEMAGVLAAQSIGEPATQMTLNTFHYA 1044

[242][TOP]
>UniRef100_Q9BN99 RNA polymerase II largest subunit (Fragment) n=1 Tax=Stenochrus
           portoricensis RepID=Q9BN99_9ARAC
          Length = 256

 Score =  107 bits (266), Expect = 5e-22
 Identities = 65/145 (44%), Positives = 82/145 (56%)
 Frame = +3

Query: 42  IFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 221
           IF V     +DLSP +++ GVE L+ +  ++  ++                         
Sbjct: 1   IFRVNARSPTDLSPLRVMHGVEDLVKKLIIVPGED------------------------- 35

Query: 222 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGE 401
              LS  A  NATLLF+  +R+ L +K V  E RL+ +AF WLL EIE RFQQA    GE
Sbjct: 36  --RLSIQANDNATLLFRALLRSVLCTKRVAEEFRLSSEAFEWLLGEIETRFQQAQVQPGE 93

Query: 402 MVGATAAQSIGEPATQMTLNTFHYA 476
           MVGA AAQS+GEPATQMTLNTFHYA
Sbjct: 94  MVGALAAQSLGEPATQMTLNTFHYA 118

[243][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
            RepID=Q7SDN0_NEUCR
          Length = 1752

 Score =  106 bits (265), Expect = 7e-22
 Identities = 61/157 (38%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +NI R+I  AK++F V +  RSDL+P  ++  V+ +L R  V+  D+             
Sbjct: 976  LNIIRIIDTAKKLFKVDETARSDLTPKDVIPAVKAMLDRMIVVRGDD------------- 1022

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           +S+ A  NAT+LF+  +R+ LA K +  + R+ + AF  +L E+E
Sbjct: 1023 --------------PISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGELE 1068

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            NR+ +++   GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1069 NRWSRSMVSPGEMVGVLAAQSIGEPATQMTLNTFHFA 1105

[244][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
            RepID=Q1E2G9_COCIM
          Length = 1750

 Score =  106 bits (265), Expect = 7e-22
 Identities = 66/157 (42%), Positives = 92/157 (58%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++ +AK  F +R+   SDL P+ ++  V+ LL R  V+  D     D I++E   
Sbjct: 981  INVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRLVVVRGD-----DVISKE--- 1032

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ NATLLF+  +R+ LA K ++ E+ L + AF  +L  IE
Sbjct: 1033 -------------------AQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAIE 1073

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF +A A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 SRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110

[245][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
            SOWgp RepID=C5PAJ4_COCP7
          Length = 1746

 Score =  106 bits (265), Expect = 7e-22
 Identities = 66/157 (42%), Positives = 92/157 (58%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++ +AK  F +R+   SDL P+ ++  V+ LL R  V+  D     D I++E   
Sbjct: 981  INVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRLVVVRGD-----DVISKE--- 1032

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ NATLLF+  +R+ LA K ++ E+ L + AF  +L  IE
Sbjct: 1033 -------------------AQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAIE 1073

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF +A A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1074 SRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1110

[246][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
            RepID=C5FCL2_NANOT
          Length = 1748

 Score =  106 bits (265), Expect = 7e-22
 Identities = 66/157 (42%), Positives = 89/157 (56%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +NI+R++ +AK  F +R    SDL P+++V  V  LL R  V+  D+             
Sbjct: 980  INIQRILESAKTTFRIRDGTISDLHPAEVVPQVRQLLDRLLVVRGDD------------- 1026

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           LS  AQ NATLLF+  +R+ LA + ++ E+ L + AF  +L  IE
Sbjct: 1027 --------------PLSREAQENATLLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAIE 1072

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF +A A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1073 SRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFA 1109

[247][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
            RepID=Q0D054_ASPTN
          Length = 1742

 Score =  106 bits (264), Expect = 9e-22
 Identities = 60/157 (38%), Positives = 91/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++  A+  F +R+   SDL P++++  V+ LL R +++  D+   V+        
Sbjct: 979  INVQRILETARSTFRIREGTISDLHPAEVIPQVQSLLDRLKIVRGDDIISVE-------- 1030

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                               AQ NATLLF+  +R+ LA + +++E+ + + AF  +L  IE
Sbjct: 1031 -------------------AQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIE 1071

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             RF +A A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1072 TRFAKAAASPGEMVGVLAAQSIGEPATQMTLNTFHFA 1108

[248][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CNZ4_ASPCL
          Length = 1765

 Score =  106 bits (264), Expect = 9e-22
 Identities = 62/157 (39%), Positives = 91/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            +N++R++  A+  F +R+   SDL P+++V  V+ LL R  V+  D+             
Sbjct: 980  INVQRILETARSTFRIREGAISDLHPAEVVPQVQSLLDRLLVVRGDDP------------ 1027

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                           +S  AQ NATLLF+  +R+ LA + +++E+ + + AF  +L  IE
Sbjct: 1028 ---------------ISHEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIE 1072

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
            +RF +A A  GEMVG  AAQSIGEPATQMTLNTFH+A
Sbjct: 1073 SRFAKAAASPGEMVGVLAAQSIGEPATQMTLNTFHFA 1109

[249][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
            RepID=A1YIA7_ISSOR
          Length = 1647

 Score =  105 bits (263), Expect = 1e-21
 Identities = 64/157 (40%), Positives = 90/157 (57%)
 Frame = +3

Query: 6    VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLP 185
            VN+ R++ NA++IF V +   SDL+  +IV+ V+ L  +  V+  D     +  ARE   
Sbjct: 882  VNVRRIVQNAQQIFHVDRYKASDLTIEEIVKSVQELCKKFTVVRGDGGCLTE--ARE--- 936

Query: 186  PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIE 365
                                  N+TLLFQ  +R+ LA++ VL E++L + AF W++  I 
Sbjct: 937  ----------------------NSTLLFQCLIRSKLATRRVLEEYKLNKDAFEWVVGTIA 974

Query: 366  NRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYA 476
             +F ++L   GEMVG  AAQSIGEPATQMTLNTFHYA
Sbjct: 975  QQFARSLVNPGEMVGVVAAQSIGEPATQMTLNTFHYA 1011

[250][TOP]
>UniRef100_A9QMQ4 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
           RepID=A9QMQ4_9BILA
          Length = 380

 Score =  105 bits (262), Expect = 2e-21
 Identities = 51/78 (65%), Positives = 62/78 (79%)
 Frame = +3

Query: 243 AQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 422
           AQ NATLL  + +R++L SK + + H+L  +AF WLL E+E RFQQA+A  GEMVGA AA
Sbjct: 1   AQYNATLLMNILIRSTLCSKKMATTHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAA 60

Query: 423 QSIGEPATQMTLNTFHYA 476
           QS+GEPATQMTLNTFHYA
Sbjct: 61  QSLGEPATQMTLNTFHYA 78