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[1][TOP] >UniRef100_A9SJE5 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SJE5_PHYPA Length = 1185 Score = 199 bits (506), Expect = 1e-49 Identities = 101/179 (56%), Positives = 125/179 (69%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 + +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PGR Sbjct: 12 EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIEIRPESQHNPGR 71 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 A + I FGQ+ +SKP TE +GE TL+P ARLRNLTYS PLY DVTK R Sbjct: 72 QAEIGDVTYKINFGQIYLSKPMMTEADGETATLWPKAARLRNLTYSAPLYVDVTKFVTR- 130 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E GEEE E+ KV+IG+VP+MLRSR+C L ++ +L LGEC DQGGYFIIN Sbjct: 131 -KTEDGEEETEQEDLSKVYIGKVPIMLRSRYCTLFENSDKDLTELGECPYDQGGYFIIN 188 [2][TOP] >UniRef100_Q1L5Y8 DNA-directed RNA polymerase n=1 Tax=Antirrhinum majus RepID=Q1L5Y8_ANTMA Length = 1200 Score = 195 bits (496), Expect = 2e-48 Identities = 98/179 (54%), Positives = 126/179 (70%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 + DIS EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG+ Sbjct: 26 EEDISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 85 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DV+K ++ Sbjct: 86 QPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIK- 144 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE +++ KVFIG+VP+MLRS +C L+ +E +L LGEC +DQGGYFIIN Sbjct: 145 -KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 202 [3][TOP] >UniRef100_Q42877 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Solanum lycopersicum RepID=RPB2_SOLLC Length = 1191 Score = 195 bits (495), Expect = 2e-48 Identities = 97/180 (53%), Positives = 127/180 (70%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 ++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG Sbjct: 16 DEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 75 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 + T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++ Sbjct: 76 HQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 135 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE +++ KVFIG+VP+MLRS +C L+ +E +L LGEC +DQGGYFIIN Sbjct: 136 --KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 193 [4][TOP] >UniRef100_Q1L5Y9 DNA-directed RNA polymerase n=1 Tax=Petunia x hybrida RepID=Q1L5Y9_PETHY Length = 1195 Score = 194 bits (494), Expect = 3e-48 Identities = 97/179 (54%), Positives = 126/179 (70%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 + +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG Sbjct: 21 EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGH 80 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 + T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++ Sbjct: 81 QSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK- 139 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE +++ KVFIG+VP+MLRS +C L+ +E +L LGEC +DQGGYFIIN Sbjct: 140 -KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 197 [5][TOP] >UniRef100_P38420 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Arabidopsis thaliana RepID=RPB2_ARATH Length = 1188 Score = 194 bits (494), Expect = 3e-48 Identities = 98/180 (54%), Positives = 125/180 (69%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG Sbjct: 17 DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 76 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 + T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++ Sbjct: 77 HQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 136 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE +++ KVFIG+VP+MLRS +C L +E +L LGEC DQGGYFIIN Sbjct: 137 --KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIIN 194 [6][TOP] >UniRef100_Q1L5B5 DNA-directed RNA polymerase n=1 Tax=Rhododendron macrophyllum RepID=Q1L5B5_RHOMC Length = 1191 Score = 194 bits (492), Expect = 5e-48 Identities = 97/179 (54%), Positives = 125/179 (69%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 + +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG Sbjct: 17 EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGH 76 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 + T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++ Sbjct: 77 QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK- 135 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE +++ KVFIG+VP+MLRS +C L+ +E +L LGEC DQGGYFIIN Sbjct: 136 -KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 193 [7][TOP] >UniRef100_B9RZ91 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RZ91_RICCO Length = 1194 Score = 194 bits (492), Expect = 5e-48 Identities = 97/180 (53%), Positives = 126/180 (70%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 ++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG Sbjct: 19 DEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 + T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++ Sbjct: 79 HQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE +++ KVFIG+VP+MLRS +C L+ +E +L LGEC DQGGYFIIN Sbjct: 139 --KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196 [8][TOP] >UniRef100_A7PJ31 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7PJ31_VITVI Length = 1220 Score = 192 bits (489), Expect = 1e-47 Identities = 98/180 (54%), Positives = 126/180 (70%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG Sbjct: 18 DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 77 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 R + T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++ Sbjct: 78 RQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIK 137 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE ++E KVFIG+VP+MLRS +C ++ +E +L LGEC DQGGYFIIN Sbjct: 138 --KGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIIN 195 [9][TOP] >UniRef100_A5C1N0 DNA-directed RNA polymerase n=2 Tax=Vitis RepID=A5C1N0_VITVI Length = 1193 Score = 192 bits (489), Expect = 1e-47 Identities = 98/180 (54%), Positives = 126/180 (70%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG Sbjct: 18 DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 77 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 R + T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++ Sbjct: 78 RQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIK 137 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE ++E KVFIG+VP+MLRS +C ++ +E +L LGEC DQGGYFIIN Sbjct: 138 --KGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIIN 195 [10][TOP] >UniRef100_Q1L5Z3 DNA-directed RNA polymerase n=1 Tax=Antirrhinum majus RepID=Q1L5Z3_ANTMA Length = 1198 Score = 191 bits (484), Expect = 4e-47 Identities = 98/179 (54%), Positives = 126/179 (70%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D DIS EDAW VI++YF+E GLVRQQL S++EF+ TMQ +VDES +I + PE Q+ PG Sbjct: 26 DEDISQEDAWTVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSNIEIRPESQHNPGG 85 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 ++ I FGQ+ +SKP TE++GE TL+P ARLRNLTYS+PLY DVTK V+ Sbjct: 86 NSDFAEAMYRISFGQIYLSKPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVTKRVVK- 144 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE ++E KVFIG+VP+MLRS +C L++L E +L LGEC DQGGYFI+N Sbjct: 145 -KGFDCEEVTETQEFAKVFIGKVPIMLRSSYCSLYHLPEKDLMDLGECPYDQGGYFIVN 202 [11][TOP] >UniRef100_Q1L5B4 DNA-directed RNA polymerase n=1 Tax=Rhododendron macrophyllum RepID=Q1L5B4_RHOMC Length = 1207 Score = 191 bits (484), Expect = 4e-47 Identities = 97/180 (53%), Positives = 126/180 (70%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 ++ +IS EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDE+ DI + PE Q+ PG Sbjct: 34 DEEEISQEDAWTVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIKPESQHNPG 93 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 R + I FGQ+ +SKP TE++GE +L+P ARLRNLTYS+PLY DVTK V+ Sbjct: 94 RQSDFVEMVYRISFGQIYLSKPMMTESDGETASLFPKAARLRNLTYSSPLYVDVTKRVVK 153 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE ++E KVFIG+VP+MLRS +C L+ +E +L LGEC DQGGYFIIN Sbjct: 154 --KGHDCEEVTETQEFTKVFIGKVPIMLRSSYCSLYQTSEKDLTELGECPFDQGGYFIIN 211 [12][TOP] >UniRef100_B9FA12 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=B9FA12_ORYSJ Length = 1218 Score = 189 bits (481), Expect = 9e-47 Identities = 98/181 (54%), Positives = 123/181 (67%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 P++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ P Sbjct: 45 PDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 104 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 GR A T I FGQ+ +SKP TE +GE TL+P ARLRNLTYS PLY DV+ + Sbjct: 105 GRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVM 164 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 + EE + E KVFIG+VP+MLRS +C L +E +L LGEC DQGGYFII Sbjct: 165 K--KGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFII 222 Query: 541 N 543 N Sbjct: 223 N 223 [13][TOP] >UniRef100_Q10G20 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=Q10G20_ORYSJ Length = 1222 Score = 189 bits (481), Expect = 9e-47 Identities = 98/181 (54%), Positives = 123/181 (67%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 P++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ P Sbjct: 49 PDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 108 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 GR A T I FGQ+ +SKP TE +GE TL+P ARLRNLTYS PLY DV+ + Sbjct: 109 GRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVM 168 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 + EE + E KVFIG+VP+MLRS +C L +E +L LGEC DQGGYFII Sbjct: 169 K--KGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFII 226 Query: 541 N 543 N Sbjct: 227 N 227 [14][TOP] >UniRef100_Q1L5Z2 DNA-directed RNA polymerase n=1 Tax=Petunia x hybrida RepID=Q1L5Z2_PETHY Length = 1203 Score = 188 bits (477), Expect = 2e-46 Identities = 94/177 (53%), Positives = 126/177 (71%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I+ +DAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDE+ DI + PE Q+ P R + Sbjct: 33 EITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPARQS 92 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +T IKF Q+ +S+P TE++GE TL+P ARLRNLTYS+PLY DV K ++ Sbjct: 93 DFVDTIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVRKEVIK--K 150 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE + +E KVFIG+VP+MLRS +C L+NL+E +L LGEC DQGGYFI+N Sbjct: 151 GHDYEEVSECQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVN 207 [15][TOP] >UniRef100_B9H2V2 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H2V2_POPTR Length = 690 Score = 188 bits (477), Expect = 2e-46 Identities = 98/187 (52%), Positives = 125/187 (66%), Gaps = 8/187 (4%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D +I+ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PG Sbjct: 9 DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGH 68 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 + T I FGQ+ +SKP TE++GE TL+P ARLRNLTYS PLY DVTK ++ Sbjct: 69 QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK- 127 Query: 367 VDPETGEEEATSEEPEKVFIGR--------VPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522 GEE +++ KVFIG+ VP+MLRS +C L+ +E +L LGEC DQ Sbjct: 128 -KGHDGEEVTETQDFTKVFIGKASIMNYLFVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 186 Query: 523 GGYFIIN 543 GGYFIIN Sbjct: 187 GGYFIIN 193 [16][TOP] >UniRef100_Q1L5Z1 DNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum RepID=Q1L5Z1_SOLLC Length = 1205 Score = 186 bits (472), Expect = 9e-46 Identities = 93/177 (52%), Positives = 124/177 (70%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I+ +DAW VI++YF+E GLVRQQL S++EF+ TMQ +VDE+ DI + PE Q+ P R Sbjct: 39 EITQDDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPSRQP 98 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 T IKF Q+ +S+P TE++GE TL+P ARLRNLTYS+PLY DV K ++ Sbjct: 99 DFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIK--K 156 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE ++E KVFIG+VP+MLRS +C L+NL+E +L LGEC DQGGYFI+N Sbjct: 157 GHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVN 213 [17][TOP] >UniRef100_Q1L5Z4 DNA-directed RNA polymerase n=1 Tax=Nicotiana sylvestris RepID=Q1L5Z4_NICSY Length = 1203 Score = 185 bits (470), Expect = 2e-45 Identities = 93/177 (52%), Positives = 124/177 (70%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I+ +DAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDE+ +I + PE Q+ P R Sbjct: 34 EITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETANIEIRPESQHNPSRQP 93 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 T IKF Q+ +S+P TE++GE TL+P ARLRNLTYS+PLY DV K ++ Sbjct: 94 DFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIK--K 151 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE ++E KVFIG+VP+MLRS +C L+NL+E +L LGEC DQGGYFI+N Sbjct: 152 GHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVN 208 [18][TOP] >UniRef100_Q54J75 DNA-directed RNA polymerase II subunit rpb2 n=1 Tax=Dictyostelium discoideum RepID=RPB2_DICDI Length = 1170 Score = 185 bits (470), Expect = 2e-45 Identities = 93/179 (51%), Positives = 125/179 (69%), Gaps = 1/179 (0%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 ADIS ED W VI+AYF E GLVRQQL S++EF+ TMQ ++DESP I L PE Q+ PG+ Sbjct: 16 ADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQA 75 Query: 190 APDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 N +KFGQ+ +SKP E +G + + PNQAR+RNLTYS PL+ D+TK TV Sbjct: 76 VVSNNVSTFSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITK-TVMT 133 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 G+E T E +++FIG+VP+MLRS++C+L+ ++ +L ++GEC DQGGYFIIN Sbjct: 134 GSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIIN 192 [19][TOP] >UniRef100_Q1L5X1 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=Q1L5X1_CHLRE Length = 1607 Score = 185 bits (469), Expect = 2e-45 Identities = 93/180 (51%), Positives = 127/180 (70%), Gaps = 1/180 (0%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D +I ED+W VI A+FD+ GLVRQQL S+NEFV+VT+Q ++DE+P+IV+ PE Q++PG Sbjct: 9 DTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGV 68 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 +A +E + +IKFGQ+ +S+P TE +GE+ L+P +ARLRNLTY PLY DVTKT Sbjct: 69 EAAEEK-EYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTR 127 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLN-EFELNSLGECHVDQGGYFIIN 543 V EE+ + V +G+VP+ML+S C LH + E E +LGEC DQGGYF+IN Sbjct: 128 VGENEVEEKT---DLSHVHLGKVPIMLKSERCNLHEASTEQEATNLGECPYDQGGYFVIN 184 [20][TOP] >UniRef100_C5WR62 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5WR62_SORBI Length = 1218 Score = 185 bits (469), Expect = 2e-45 Identities = 95/177 (53%), Positives = 120/177 (67%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I +DAW VI+AYF+E GLVRQQL S++EF+ TMQ +VDES DI + PE Q+ PGR A Sbjct: 64 EIGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQA 123 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 T I FGQ+ +SKP TE +GE TL+P ARLRNLTYS PLY DV+ ++ Sbjct: 124 EFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMK--K 181 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE + + KVFIG+VP+MLRS +C L+ +E +L LGEC DQGGYFIIN Sbjct: 182 GHDCEEVTETADYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIIN 238 [21][TOP] >UniRef100_C1E1U0 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299 RepID=C1E1U0_9CHLO Length = 1178 Score = 184 bits (467), Expect = 4e-45 Identities = 92/185 (49%), Positives = 127/185 (68%), Gaps = 6/185 (3%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 + +I EDAW VI+++F+E GL RQQL S+NEF+ TMQ +VDE D + PE+Q++PG Sbjct: 11 EEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFTIEPEEQHMPGE 70 Query: 187 DAPDE-NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 +A + K ++F Q+ +SKP TE +G TL+P +ARLRNLTYS PLY D+ K+T+ Sbjct: 71 EADGKGKKKYKVEFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYIDMAKSTIT 130 Query: 364 L---VDPETGE--EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528 +D TG+ E +EE KVF G+VP+MLRS++C LH+ + EL LGEC D+GG Sbjct: 131 TTDEIDATTGKYIETIDTEEYPKVFFGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGG 190 Query: 529 YFIIN 543 YFIIN Sbjct: 191 YFIIN 195 [22][TOP] >UniRef100_A4RQU3 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RQU3_OSTLU Length = 1174 Score = 177 bits (449), Expect = 4e-43 Identities = 93/180 (51%), Positives = 119/180 (66%), Gaps = 1/180 (0%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 + +I EDAW VI+++F+E GLVRQQL S+NEF+ TMQ +VDE +I L PE Q++PG+ Sbjct: 11 EEEIGQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIELTPEHQHMPGQ 70 Query: 187 DAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 D K I F Q+ +SKP TE +G TL+P +ARLRNLTYS PLY D+ K V Sbjct: 71 DIDSMEKKTYKISFNQIYLSKPMVTEADGYTTTLFPKEARLRNLTYSAPLYVDMVK-EVT 129 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 V P+ GE E K FIG+VP+MLRS +C LH + EL LGEC D+GGYF+IN Sbjct: 130 TVQPD-GETTVEKEILNKNFIGKVPIMLRSDYCSLHGHTDKELTELGECPYDEGGYFVIN 188 [23][TOP] >UniRef100_A9BK63 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK63_9CRYP Length = 1222 Score = 176 bits (447), Expect = 8e-43 Identities = 83/182 (45%), Positives = 123/182 (67%), Gaps = 2/182 (1%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 ND I +D W ++ ++F E+ LVRQQL S+NEF+ TMQ ++D+ P IV+ E Sbjct: 6 NDEIIKQDDMWIILESFFKENNLVRQQLDSFNEFIQNTMQDIIDDIPPIVIKTEFDKFKS 65 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 + ++ K++++FGQL +SKP F E NG TL PN+ARLRNLTYS+PLYCD++ T+ Sbjct: 66 SETK-KSLKLILRFGQLHLSKPTFIEENGTTHTLLPNEARLRNLTYSSPLYCDISTITLN 124 Query: 364 LVDPETGE--EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFI 537 + + TGE E ++ +K+ +GR+P+M++SRFC+L L +L +GEC +D GGYFI Sbjct: 125 ITEELTGEIKENFLKDDHQKILLGRIPIMVKSRFCVLDKLLPMDLIRIGECPIDPGGYFI 184 Query: 538 IN 543 IN Sbjct: 185 IN 186 [24][TOP] >UniRef100_Q1WMR3 DNA-directed RNA polymerase n=1 Tax=Coprinellus disseminatus RepID=Q1WMR3_COPDI Length = 1241 Score = 174 bits (440), Expect = 5e-42 Identities = 93/186 (50%), Positives = 125/186 (67%), Gaps = 8/186 (4%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 A+I+ ED W VI ++FD+ GLVRQQL S++EFV TMQ LVDE+ D++L DQ+ G D Sbjct: 45 AEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHD 103 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT-VRL 366 D + IKFGQ+ +S+P TE +G L+P +ARLRNLTYS+PLY ++ K + Sbjct: 104 T-DMTRRYEIKFGQIYLSRPTVTEADGSVFPLFPQEARLRNLTYSSPLYVEMKKRVLIGR 162 Query: 367 VDPE--TGE-----EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525 DP+ G+ E+ + EPEK++IG+VP+MLRS FC+LH L + EL L EC D G Sbjct: 163 EDPDGVPGDIQWETEQEDTGEPEKIWIGKVPIMLRSSFCILHQLRDNELYDLNECPYDSG 222 Query: 526 GYFIIN 543 GYFIIN Sbjct: 223 GYFIIN 228 [25][TOP] >UniRef100_UPI00017937B7 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide n=1 Tax=Acyrthosiphon pisum RepID=UPI00017937B7 Length = 1101 Score = 171 bits (434), Expect = 2e-41 Identities = 88/178 (49%), Positives = 119/178 (66%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 +++ E W VIN+YFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G Sbjct: 20 SELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAESQHTHGEI 79 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 D TK IKF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 80 --DTPTKYQIKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIK-- 135 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE ++ K FIG++P+MLRS +CLL LN+ +L L EC +D GGYFIIN Sbjct: 136 ---DGEEPVVTQH-SKSFIGKIPIMLRSTYCLLFGLNDRDLTELNECPLDPGGYFIIN 189 [26][TOP] >UniRef100_C1ML14 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1ML14_9CHLO Length = 1172 Score = 171 bits (434), Expect = 2e-41 Identities = 91/181 (50%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLV-DESPDIVLIPEDQYVPG 183 D +I EDAW VI+++F+E GL RQQL S+NEF+ MQ +V DE L PE Q+VPG Sbjct: 10 DEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHAMQEIVVDEMSSFELEPEQQHVPG 69 Query: 184 RDAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 + K I F Q+ +SKP TE +G TL+P +ARLRNLTYS PLY D+ KT Sbjct: 70 EEGEGGEKKTYKISFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYVDMEKTVT 129 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 + EE E+ KVFIG+VP+MLRS +C LH+ + EL LGEC D+GGYFII Sbjct: 130 TVTLDSQKTEEV--EKINKVFIGKVPIMLRSEYCSLHDHTDKELTELGECPYDEGGYFII 187 Query: 541 N 543 N Sbjct: 188 N 188 [27][TOP] >UniRef100_UPI00015B44D8 PREDICTED: similar to ENSANGP00000011389 n=1 Tax=Nasonia vitripennis RepID=UPI00015B44D8 Length = 1175 Score = 169 bits (428), Expect = 1e-40 Identities = 86/173 (49%), Positives = 118/173 (68%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V+ESP I L E Q+ G + Sbjct: 24 EACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEESPQIDLQAEAQHRTGDI--ETP 81 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 T+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 82 TRHLVKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK------E 135 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE T + +K FIG++P+MLRS++CLL L++ +L L EC +D GGYFIIN Sbjct: 136 GEEPTETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIIN 188 [28][TOP] >UniRef100_B6K5Q5 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5Q5_SCHJY Length = 1210 Score = 169 bits (428), Expect = 1e-40 Identities = 88/183 (48%), Positives = 120/183 (65%), Gaps = 7/183 (3%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 ++ ED W VI++YF+E+ L RQQL S++EFV TMQ +VD+ + L DQY A Sbjct: 12 LTQEDCWTVISSYFEENSLARQQLSSFDEFVQNTMQEIVDDDSTLTL---DQYAQHTGAQ 68 Query: 196 DENTK-VVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 + T+ I FGQ+ +S+P TE +G T++P +ARLRNLTYS+PLY D+ K +R D Sbjct: 69 GDYTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMRAQD 128 Query: 373 PET--GEE----EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534 GEE E +EP KVFIG++P+MLRS FC+L+ +++ EL L EC DQGGYF Sbjct: 129 SNVPIGEEIWLTEEEDDEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYF 188 Query: 535 IIN 543 IIN Sbjct: 189 IIN 191 [29][TOP] >UniRef100_B8C598 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C598_THAPS Length = 1196 Score = 169 bits (427), Expect = 2e-40 Identities = 93/195 (47%), Positives = 126/195 (64%), Gaps = 15/195 (7%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 +D ++ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ LVD+S I + PE Q++ G Sbjct: 4 DDMPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVG 63 Query: 184 RD------APDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYC 339 D + TK V +KFGQ+ +SKP E +G ++P++ARLRNLTY+ PLY Sbjct: 64 YDEANFDETMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYV 123 Query: 340 DVTK------TTVRLVDP-ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNS 498 DVT V + DP E E ++EE K F+G VP+MLRS FC+L + ++ +L Sbjct: 124 DVTMNEYRVGNDVNVGDPAEDMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLAD 183 Query: 499 LGECHVDQGGYFIIN 543 LGEC DQGGYF+IN Sbjct: 184 LGECIYDQGGYFVIN 198 [30][TOP] >UniRef100_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8PJ53_COPC7 Length = 742 Score = 167 bits (422), Expect = 6e-40 Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 8/186 (4%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 A I+ ED W VI+++FD+ GLVRQQL S++EFV TMQ LVDE+ D++L DQ+ Sbjct: 27 APITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHT--GQ 84 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK-TTVRL 366 A D + IKFGQ+ +S+P TE +G ++P +ARLRNLTYS PLY ++ K V Sbjct: 85 AGDMTRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGR 144 Query: 367 VDPET-------GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525 DP E E T + K++IG+VP+MLRS FC+LH L + +L L EC D G Sbjct: 145 EDPAVPGDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSG 204 Query: 526 GYFIIN 543 GYFIIN Sbjct: 205 GYFIIN 210 [31][TOP] >UniRef100_A8N2R8 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N2R8_COPC7 Length = 1222 Score = 167 bits (422), Expect = 6e-40 Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 8/186 (4%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 A I+ ED W VI+++FD+ GLVRQQL S++EFV TMQ LVDE+ D++L DQ+ Sbjct: 27 APITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHT--GQ 84 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK-TTVRL 366 A D + IKFGQ+ +S+P TE +G ++P +ARLRNLTYS PLY ++ K V Sbjct: 85 AGDMTRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGR 144 Query: 367 VDPET-------GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525 DP E E T + K++IG+VP+MLRS FC+LH L + +L L EC D G Sbjct: 145 EDPAVPGDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSG 204 Query: 526 GYFIIN 543 GYFIIN Sbjct: 205 GYFIIN 210 [32][TOP] >UniRef100_UPI0000D5712C PREDICTED: similar to AGAP003648-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D5712C Length = 1175 Score = 166 bits (420), Expect = 1e-39 Identities = 83/178 (46%), Positives = 119/178 (66%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 +++ E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G Sbjct: 19 SELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGE- 77 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 + ++ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+ Sbjct: 78 -LENPSRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK-- 134 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E+ + +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 ----DGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 188 [33][TOP] >UniRef100_A8I9Z6 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8I9Z6_CHLRE Length = 1634 Score = 166 bits (420), Expect = 1e-39 Identities = 86/179 (48%), Positives = 121/179 (67%), Gaps = 1/179 (0%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D +I ED+W VI A+FD+ GLVRQQL S+NEFV+VT+Q ++DE+P+IV+ PE Q++PG Sbjct: 17 DTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGV 76 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 +A +E + +IKFGQ+ +S+P TE +GE+ L+P +ARLRNLTY PLY DVTKT Sbjct: 77 EAAEEK-EYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTR 135 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLN-EFELNSLGECHVDQGGYFII 540 V EE+ +E V +G+VP+ML+S C LH + E E +LGE + I+ Sbjct: 136 VGENEVEEK--TETFSHVHLGKVPIMLKSERCNLHEASTEQEATNLGESYFGAAACLIV 192 [34][TOP] >UniRef100_A8Q7K3 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8Q7K3_BRUMA Length = 1185 Score = 166 bits (420), Expect = 1e-39 Identities = 85/183 (46%), Positives = 121/183 (66%), Gaps = 4/183 (2%) Frame = +1 Query: 7 DADISAED----AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 174 D +IS+E W VI+AYFDE GLVRQQL S++EF+ + +QR+V++SP + L E Q+ Sbjct: 16 DEEISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQH 75 Query: 175 VPGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT 354 G + K +KF Q+ +SKP E +G + PN+ARLRNLTYS+PLY D+TKT Sbjct: 76 FSGD--VENPIKFALKFDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYIDITKT 133 Query: 355 TVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534 R EE + EKVF+G++P+MLRS +C+L N+++ +L+ L EC +D GGYF Sbjct: 134 MTR------SGEEPKETKYEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYF 187 Query: 535 IIN 543 +IN Sbjct: 188 VIN 190 [35][TOP] >UniRef100_UPI00006A01AA DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA polymerase II subunit B2) (DNA-directed RNA polymerase II subunit B) (RNA polymerase II subunit 2) (DNA-directed RNA polymerase II 140 kDa polypeptide). n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A01AA Length = 927 Score = 166 bits (419), Expect = 1e-39 Identities = 84/177 (47%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTTGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQIQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [36][TOP] >UniRef100_Q6PA46 MGC68569 protein n=1 Tax=Xenopus laevis RepID=Q6PA46_XENLA Length = 949 Score = 166 bits (419), Expect = 1e-39 Identities = 84/177 (47%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTTGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQIQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [37][TOP] >UniRef100_B7FVG3 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVG3_PHATR Length = 1212 Score = 166 bits (419), Expect = 1e-39 Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 16/196 (8%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 ++ ++ EDAW VI+AYF+E GLVRQQL S++EF+ TMQ LVD+S DI + PE Q++ G Sbjct: 22 DEIPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVG 81 Query: 184 RD------APDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYC 339 D ++ TK V I FGQ+ +SKP E +G ++P++ARLRN+TYS PLY Sbjct: 82 YDDEAYDREQEKETKFVFEIHFGQVYLSKPTTVEKDGTITNMFPHEARLRNMTYSAPLYV 141 Query: 340 DV------TKTTVRLVDP--ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELN 495 DV V + DP + GE AT E +K F+G VP+MLRS FC+L + ++ +L+ Sbjct: 142 DVDLNQYQVGREVNVNDPSEDLGEPVAT-EHAKKEFLGYVPIMLRSLFCVLSDKDDADLS 200 Query: 496 SLGECHVDQGGYFIIN 543 LGEC DQGGYF+IN Sbjct: 201 DLGECVYDQGGYFVIN 216 [38][TOP] >UniRef100_B7QNH8 DNA-directed RNA polymerase n=1 Tax=Ixodes scapularis RepID=B7QNH8_IXOSC Length = 1142 Score = 166 bits (419), Expect = 1e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI+AYFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHASGEI- 78 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 + + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 79 -ENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE ++ +K FIG++P+MLRS +CLL++L + +L+ L EC +D GGYFIIN Sbjct: 135 --EGEEPVETQH-QKTFIGKIPIMLRSTYCLLNSLTDRDLSELNECPLDPGGYFIIN 188 [39][TOP] >UniRef100_B4DHJ3 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4DHJ3_HUMAN Length = 1167 Score = 166 bits (419), Expect = 1e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 13 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 70 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 71 VEEPPRYLLKFEQIYLSKPTHRERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 127 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 128 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 181 [40][TOP] >UniRef100_Q5KIB7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans RepID=Q5KIB7_CRYNE Length = 1193 Score = 166 bits (419), Expect = 1e-39 Identities = 91/190 (47%), Positives = 119/190 (62%), Gaps = 11/190 (5%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D IS ED W VIN++F+E GLVRQQL+S+NEF+ TMQ +VD+ + L QY Sbjct: 46 DEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGV- 104 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 A DE + I FGQ+ +++ N TE +G L+P +ARLRNLTYS PLY D+ K T+ Sbjct: 105 -AGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTA 163 Query: 367 --VD--------PETGEE-EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECH 513 VD P G++ E E EK IG+VPVM+RS FCLLH L + + + +GEC Sbjct: 164 SGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECP 223 Query: 514 VDQGGYFIIN 543 DQGGYFII+ Sbjct: 224 YDQGGYFIIS 233 [41][TOP] >UniRef100_Q55U25 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans RepID=Q55U25_CRYNE Length = 1245 Score = 166 bits (419), Expect = 1e-39 Identities = 91/190 (47%), Positives = 119/190 (62%), Gaps = 11/190 (5%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D IS ED W VIN++F+E GLVRQQL+S+NEF+ TMQ +VD+ + L QY Sbjct: 45 DEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGV- 103 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 A DE + I FGQ+ +++ N TE +G L+P +ARLRNLTYS PLY D+ K T+ Sbjct: 104 -AGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTA 162 Query: 367 --VD--------PETGEE-EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECH 513 VD P G++ E E EK IG+VPVM+RS FCLLH L + + + +GEC Sbjct: 163 SGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECP 222 Query: 514 VDQGGYFIIN 543 DQGGYFII+ Sbjct: 223 YDQGGYFIIS 232 [42][TOP] >UniRef100_UPI0001795E58 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB2 (RNA polymerase II subunit B2) (DNA-directed RNA polymerase II subunit B) (RNA polymerase II subunit 2) (DNA-directed RNA polymerase II 140 kDa polypeptide) n=1 Tax=Equus caballus RepID=UPI0001795E58 Length = 1174 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [43][TOP] >UniRef100_UPI000155BCC7 PREDICTED: similar to RNA polymerase II 140 kDa subunit, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BCC7 Length = 951 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [44][TOP] >UniRef100_UPI0000F2D75F PREDICTED: similar to RNA polymerase II 140 kDa subunit n=1 Tax=Monodelphis domestica RepID=UPI0000F2D75F Length = 1174 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [45][TOP] >UniRef100_P30876 DNA-directed RNA polymerase II subunit RPB2 n=2 Tax=Catarrhini RepID=RPB2_HUMAN Length = 1174 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [46][TOP] >UniRef100_UPI00005A2A5C PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 16 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5C Length = 1173 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [47][TOP] >UniRef100_UPI00005A2A5B PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 15 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5B Length = 1179 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [48][TOP] >UniRef100_UPI00005A2A5A PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 14 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5A Length = 1175 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [49][TOP] >UniRef100_UPI00005A2A59 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 13 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A59 Length = 1180 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [50][TOP] >UniRef100_UPI00005A2A58 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 12 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A58 Length = 1174 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [51][TOP] >UniRef100_UPI00005A2A57 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 11 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A57 Length = 1180 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [52][TOP] >UniRef100_UPI00005A2A56 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 10 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A56 Length = 1166 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [53][TOP] >UniRef100_UPI00005A2A55 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 9 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A55 Length = 1182 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [54][TOP] >UniRef100_UPI00005A2A54 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 8 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A54 Length = 1173 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [55][TOP] >UniRef100_UPI00005A2A53 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 7 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A53 Length = 1113 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [56][TOP] >UniRef100_UPI00005A2A52 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 6 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A52 Length = 1162 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [57][TOP] >UniRef100_UPI00005A2A51 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 5 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A51 Length = 932 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [58][TOP] >UniRef100_UPI00005A2A4F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide B isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A4F Length = 193 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [59][TOP] >UniRef100_UPI0000EB23D9 DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA polymerase II subunit B2) (DNA-directed RNA polymerase II subunit B) (RNA polymerase II subunit 2) (DNA-directed RNA polymerase II 140 kDa polypeptide). n=1 Tax=Canis lupus familiaris RepID=UPI0000EB23D9 Length = 1176 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [60][TOP] >UniRef100_UPI0000F3357E UPI0000F3357E related cluster n=1 Tax=Bos taurus RepID=UPI0000F3357E Length = 1177 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 21 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 78 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 79 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 135 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 136 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 189 [61][TOP] >UniRef100_A5PJW8 DNA-directed RNA polymerase n=1 Tax=Bos taurus RepID=A5PJW8_BOVIN Length = 1174 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [62][TOP] >UniRef100_B0WKE9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus RepID=B0WKE9_CULQU Length = 1176 Score = 165 bits (418), Expect = 2e-39 Identities = 83/173 (47%), Positives = 114/173 (65%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHTTG--DIETP 82 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 T+ V+KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT + Sbjct: 83 TRYVLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKI------VE 136 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 ++ + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 137 GQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189 [63][TOP] >UniRef100_A8MW88 DNA-directed RNA polymerase (Fragment) n=1 Tax=Homo sapiens RepID=A8MW88_HUMAN Length = 1173 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 19 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 76 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 77 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 133 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 134 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 187 [64][TOP] >UniRef100_Q6RYH8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Filobasidiella neoformans RepID=Q6RYH8_CRYNE Length = 1114 Score = 165 bits (418), Expect = 2e-39 Identities = 90/191 (47%), Positives = 119/191 (62%), Gaps = 11/191 (5%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 +D IS ED W V N++F+E GLVRQQL+S+NEF+ TMQ +VD+ + L QY Sbjct: 36 DDEPISQEDYWTVTNSFFEEKGLVRQQLESFNEFIETTMQEIVDDHSRLTLDQFTQYTGV 95 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 A DE + I FGQ+ +++ N TE +G L+P +ARLRNLTYS PLY D+ K T+ Sbjct: 96 --AGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLT 153 Query: 364 L--VD--------PETGEE-EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGEC 510 VD P G++ E E EK IG+VPVM+RS FCLLH L + + + +GEC Sbjct: 154 ASGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGEC 213 Query: 511 HVDQGGYFIIN 543 DQGGYFII+ Sbjct: 214 PYDQGGYFIIS 224 [65][TOP] >UniRef100_Q8CFI7 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Mus musculus RepID=RPB2_MOUSE Length = 1174 Score = 165 bits (418), Expect = 2e-39 Identities = 83/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [66][TOP] >UniRef100_Q10578 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Caenorhabditis elegans RepID=RPB2_CAEEL Length = 1193 Score = 165 bits (418), Expect = 2e-39 Identities = 84/178 (47%), Positives = 120/178 (67%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 A+ E W VI+AYFDE GLVRQQL S++EFV + +QR+V++SP + L E+Q++ G D Sbjct: 26 AEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHL-GTD 84 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 + K +KF Q+ +SKP E +G + PN+ARLRNLTY++PLY D+TK R Sbjct: 85 M-ENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTR-- 141 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 ++ AT + +KVF+G+VPVMLRS +C+L N+ + +L L EC +D GGYF+IN Sbjct: 142 -----DDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVIN 194 [67][TOP] >UniRef100_Q7QAK7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7QAK7_ANOGA Length = 1175 Score = 165 bits (417), Expect = 2e-39 Identities = 84/173 (48%), Positives = 117/173 (67%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 24 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSSGE--IENP 81 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 T+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT +LV+ Sbjct: 82 TRYLLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT--KLVE---- 135 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 ++ + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 136 GQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 188 [68][TOP] >UniRef100_B3S2W9 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S2W9_TRIAD Length = 1196 Score = 165 bits (417), Expect = 2e-39 Identities = 83/179 (46%), Positives = 116/179 (64%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 + D+ E W VINAYF+E GLVRQQL S++EF+ +++QR+V++SP I + E Q+ Sbjct: 20 ETDLWQEACWVVINAYFNEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDIQGETQHHSSE 79 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 + ++ + +KF Q+ +SKP F E +G + NQARLRNLTYS PLY D+TKT + Sbjct: 80 E--QQSVRYQLKFDQIYLSKPTFWEKDGSPTPMMSNQARLRNLTYSAPLYVDITKTITK- 136 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 G E + K FIG++P+MLRS +CLLHN+ + L L EC +D GGYFIIN Sbjct: 137 -----GNNEPEVKCHPKTFIGKIPIMLRSTYCLLHNMADHALTELNECPLDVGGYFIIN 190 [69][TOP] >UniRef100_UPI0000221AC5 hypothetical protein CBG18197 n=1 Tax=Caenorhabditis briggsae AF16 RepID=UPI0000221AC5 Length = 1194 Score = 164 bits (416), Expect = 3e-39 Identities = 84/177 (47%), Positives = 117/177 (66%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D E W VI+AYFDE GLVRQQL S++EFV + +QR+V++SP + L E+Q++ G D Sbjct: 28 DAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHL-GNDM 86 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 + K +KF Q+ +SKP E +G + PN+ARLRNLTY++PLY D+TK R Sbjct: 87 -ENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTR--- 142 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +E + EKVF+G+VPVMLRS +C+L N+ + +L L EC +D GGYF+IN Sbjct: 143 ----DESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVIN 195 [70][TOP] >UniRef100_Q5CY45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium parvum Iowa II RepID=Q5CY45_CRYPV Length = 1177 Score = 164 bits (416), Expect = 3e-39 Identities = 81/178 (45%), Positives = 115/178 (64%), Gaps = 1/178 (0%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I ED+W +I YF + GLV QQL+S+N+F+ +Q +VDE P I++ P+ QY P Sbjct: 15 EIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYRPDEQI 74 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 D + V+KFGQL +S+P+ E G A L+PN+ARLRNLTYS+P++ D + +L D Sbjct: 75 -DTKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVYKLED 133 Query: 373 PETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 G E E ++ + ++P+MLRS +C HN++E EL S GEC DQGGYFIIN Sbjct: 134 --DGSETLVYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIIN 189 [71][TOP] >UniRef100_Q5CN11 DNA-directed RNA polymerase II second largest chain n=1 Tax=Cryptosporidium hominis RepID=Q5CN11_CRYHO Length = 733 Score = 164 bits (416), Expect = 3e-39 Identities = 81/178 (45%), Positives = 115/178 (64%), Gaps = 1/178 (0%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I ED+W +I YF + GLV QQL+S+N+F+ +Q +VDE P I++ P+ QY P Sbjct: 15 EIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYRPDEQI 74 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 D + V+KFGQL +S+P+ E G A L+PN+ARLRNLTYS+P++ D + +L D Sbjct: 75 -DTKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVYKLED 133 Query: 373 PETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 G E E ++ + ++P+MLRS +C HN++E EL S GEC DQGGYFIIN Sbjct: 134 --DGSETLVYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIIN 189 [72][TOP] >UniRef100_UPI0001B09250 DNA directed RNA polymerase II polypeptide B n=1 Tax=Danio rerio RepID=UPI0001B09250 Length = 1174 Score = 164 bits (415), Expect = 4e-39 Identities = 83/177 (46%), Positives = 120/177 (67%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 135 --DGEEQQQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188 [73][TOP] >UniRef100_UPI000194C2A3 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1 Tax=Taeniopygia guttata RepID=UPI000194C2A3 Length = 1174 Score = 164 bits (415), Expect = 4e-39 Identities = 82/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GE++ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [74][TOP] >UniRef100_UPI0001926137 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926137 Length = 1426 Score = 164 bits (415), Expect = 4e-39 Identities = 84/173 (48%), Positives = 118/173 (68%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VI++YF+E GLVRQQL S++EF+ +++QR+V+ESP I L E QY + +E Sbjct: 28 EACWTVISSYFEEKGLVRQQLDSFDEFIQMSVQRIVEESPPIELQAETQYT--ENEIEEP 85 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 T+ +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D++KT R +G Sbjct: 86 TRYQLKFEQIYLSKPTHWEKDGAPKPMMPNEARLRNLTYSAPLYVDISKTITR-----SG 140 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +E T EE K++IG++P+MLRS +C+L L + +L L EC +D GGYFIIN Sbjct: 141 QEPET-EEHSKIYIGKIPIMLRSTYCVLSGLVDRDLTELNECPLDPGGYFIIN 192 [75][TOP] >UniRef100_UPI0000ECC4A8 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1 Tax=Gallus gallus RepID=UPI0000ECC4A8 Length = 1176 Score = 164 bits (415), Expect = 4e-39 Identities = 82/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 21 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 78 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 79 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 135 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GE++ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 136 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 189 [76][TOP] >UniRef100_UPI00003AD7E4 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1 Tax=Gallus gallus RepID=UPI00003AD7E4 Length = 1174 Score = 164 bits (415), Expect = 4e-39 Identities = 82/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GE++ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [77][TOP] >UniRef100_Q6DRH1 RNA polymerase II subunit B (Fragment) n=1 Tax=Danio rerio RepID=Q6DRH1_DANRE Length = 562 Score = 164 bits (415), Expect = 4e-39 Identities = 83/177 (46%), Positives = 120/177 (67%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 135 --DGEEQQQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188 [78][TOP] >UniRef100_Q5ZMN9 DNA-directed RNA polymerase n=1 Tax=Gallus gallus RepID=Q5ZMN9_CHICK Length = 1174 Score = 164 bits (415), Expect = 4e-39 Identities = 82/177 (46%), Positives = 121/177 (68%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEARWIVISSYFDEEGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GE++ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188 [79][TOP] >UniRef100_Q504C7 Polr2b protein n=1 Tax=Danio rerio RepID=Q504C7_DANRE Length = 366 Score = 164 bits (415), Expect = 4e-39 Identities = 83/177 (46%), Positives = 120/177 (67%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 +E + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE+ ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 135 --DGEEQQQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188 [80][TOP] >UniRef100_Q02061 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Schizosaccharomyces pombe RepID=RPB2_SCHPO Length = 1210 Score = 164 bits (414), Expect = 5e-39 Identities = 87/183 (47%), Positives = 118/183 (64%), Gaps = 7/183 (3%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 ++ ED W VI+++F+E L RQQL S++EFV TMQ +VD+ + L DQY A Sbjct: 12 LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTL---DQYAQHTGAQ 68 Query: 196 DENTK-VVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 + T+ I FGQ+ +S+P TE +G T++P +ARLRNLTYS+PLY D+ K + D Sbjct: 69 GDVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAAD 128 Query: 373 PET--GEEE----ATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534 GEEE EEP KVFIG++P+MLRS FC+L+ +++ EL L EC DQGGYF Sbjct: 129 SNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYF 188 Query: 535 IIN 543 IIN Sbjct: 189 IIN 191 [81][TOP] >UniRef100_C0HA74 DNA-directed RNA polymerase n=1 Tax=Salmo salar RepID=C0HA74_SALSA Length = 1174 Score = 162 bits (409), Expect = 2e-38 Identities = 81/177 (45%), Positives = 120/177 (67%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 20 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 ++ + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ Sbjct: 78 VEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GE++ ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188 [82][TOP] >UniRef100_Q1L5A7 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Spinacia oleracea RepID=Q1L5A7_SPIOL Length = 495 Score = 160 bits (406), Expect = 4e-38 Identities = 83/155 (53%), Positives = 104/155 (67%) Frame = +1 Query: 79 QQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFT 258 QQL S++EF+ TMQ +VDES DI + PE Q+ PG + T IKFGQ+ +SKP T Sbjct: 1 QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKIKFGQIYLSKPMMT 60 Query: 259 ENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVP 438 E++GE TL+P ARLRNLTYS PLY DVTK +R G+E + E KVFIG+VP Sbjct: 61 ESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIR--KGHDGDELTEAHELPKVFIGKVP 118 Query: 439 VMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +MLRS +C L+ +E +L LGEC DQGG FIIN Sbjct: 119 IMLRSSYCTLYQNSEKDLTELGECPYDQGGCFIIN 153 [83][TOP] >UniRef100_B4R0H5 DNA-directed RNA polymerase n=1 Tax=Drosophila simulans RepID=B4R0H5_DROSI Length = 1176 Score = 160 bits (406), Expect = 4e-38 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381 + +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189 [84][TOP] >UniRef100_B4PTC0 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba RepID=B4PTC0_DROYA Length = 1176 Score = 160 bits (406), Expect = 4e-38 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381 + +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189 [85][TOP] >UniRef100_B4N9I3 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni RepID=B4N9I3_DROWI Length = 1176 Score = 160 bits (406), Expect = 4e-38 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381 + +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189 [86][TOP] >UniRef100_B4M040 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis RepID=B4M040_DROVI Length = 1176 Score = 160 bits (406), Expect = 4e-38 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381 + +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDP-- 140 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189 [87][TOP] >UniRef100_B4KDW5 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis RepID=B4KDW5_DROMO Length = 1176 Score = 160 bits (406), Expect = 4e-38 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381 + +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDP-- 140 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189 [88][TOP] >UniRef100_B4K015 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi RepID=B4K015_DROGR Length = 1175 Score = 160 bits (406), Expect = 4e-38 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 24 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 81 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381 + +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP Sbjct: 82 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 139 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 140 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 188 [89][TOP] >UniRef100_Q298X6 DNA-directed RNA polymerase n=2 Tax=pseudoobscura subgroup RepID=Q298X6_DROPS Length = 1176 Score = 160 bits (406), Expect = 4e-38 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381 + +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189 [90][TOP] >UniRef100_B3P0M0 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta RepID=B3P0M0_DROER Length = 1176 Score = 160 bits (406), Expect = 4e-38 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381 + +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189 [91][TOP] >UniRef100_P08266 DNA-directed RNA polymerase II subunit RPB2 n=2 Tax=melanogaster subgroup RepID=RPB2_DROME Length = 1176 Score = 160 bits (406), Expect = 4e-38 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381 + +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V +DP Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189 [92][TOP] >UniRef100_UPI000180B7B7 PREDICTED: similar to POLR2B protein n=1 Tax=Ciona intestinalis RepID=UPI000180B7B7 Length = 1173 Score = 160 bits (405), Expect = 6e-38 Identities = 81/173 (46%), Positives = 114/173 (65%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ + Sbjct: 24 EACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPIIELQAESQHTSTEVSVP-- 81 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 TK ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+ Sbjct: 82 TKYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK------H 135 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E + + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 136 EAQPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 188 [93][TOP] >UniRef100_B6AET6 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AET6_9CRYT Length = 1184 Score = 160 bits (405), Expect = 6e-38 Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 1/180 (0%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D ++ ED+W +I YF + GLV QQL+S+N+F+ +Q +VDE P IV+IP+ QY P Sbjct: 7 DDEVQQEDSWALIGTYFRDRGLVSQQLESFNDFIMYKLQEIVDEHPPIVIIPQPQYRPDE 66 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 D + + V+KFGQL +S+P+ E G A L+P++ARLR+LTY++P++ D + R+ Sbjct: 67 QI-DTSIQYVLKFGQLSLSRPSVEEREGVARGLWPSEARLRSLTYASPVFVDAEQKIYRM 125 Query: 367 VDPETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E G + E ++ + ++P+MLRS +C HN++E EL S GEC DQGGYFIIN Sbjct: 126 --HEDGTQTLLHETTYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECIYDQGGYFIIN 183 [94][TOP] >UniRef100_A5DHT2 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Pichia guilliermondii RepID=RPB2_PICGU Length = 1236 Score = 160 bits (405), Expect = 6e-38 Identities = 85/188 (45%), Positives = 118/188 (62%), Gaps = 8/188 (4%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 + + I+ ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q+ Sbjct: 14 DSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSE 73 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 D EN + I FG++ +SKP TE +G ++P +ARLRNLTYS+PLY D+TK ++ Sbjct: 74 ED--HENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLK 131 Query: 364 LVDP-------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVD 519 D E EEE EEP KV++G+VP+MLRS+FC+L +L E E L EC D Sbjct: 132 SDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYD 191 Query: 520 QGGYFIIN 543 GGYF+IN Sbjct: 192 MGGYFVIN 199 [95][TOP] >UniRef100_UPI0000586387 PREDICTED: similar to RNA polymerase II subunit B, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000586387 Length = 300 Score = 160 bits (404), Expect = 7e-38 Identities = 81/173 (46%), Positives = 117/173 (67%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP + L E Q++ + Sbjct: 24 EACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAVDLQAEAQHMTTEQ--EVP 81 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 T+ ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ D E Sbjct: 82 TRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIK--DGEDP 139 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +E +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 140 QETI----HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 188 [96][TOP] >UniRef100_A7SHD8 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis RepID=A7SHD8_NEMVE Length = 1182 Score = 160 bits (404), Expect = 7e-38 Identities = 81/177 (45%), Positives = 116/177 (65%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP+I L E Q++ Sbjct: 24 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPEIDLQAESQHM--TSD 81 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 + + V+KF Q+ +SKP E +G + PN+ARLRNLTYS P Y D+TKT ++ Sbjct: 82 TEIPARFVLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPFYVDITKTRIK--- 138 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE K+FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 139 ---DNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIIN 192 [97][TOP] >UniRef100_Q753Q4 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Eremothecium gossypii RepID=RPB2_ASHGO Length = 1222 Score = 160 bits (404), Expect = 7e-38 Identities = 84/186 (45%), Positives = 124/186 (66%), Gaps = 7/186 (3%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 DA I+AED+W VI+A+F E GLV QQL S+N+F++ T+Q L+ E ++L Q+ Sbjct: 18 DAPITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTT-- 75 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 +A + + K I FG++ ++KP+ TE++G + +YP +ARLRNLTY++ L+ ++ K T Sbjct: 76 EADNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEA 135 Query: 367 VDP-------ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525 VD E +EE+ E K+FIGRVP+MLRS++CLL +L+E +L L EC D G Sbjct: 136 VDIPGRDLKYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMG 195 Query: 526 GYFIIN 543 GYFIIN Sbjct: 196 GYFIIN 201 [98][TOP] >UniRef100_Q4YWL7 Putative uncharacterized protein (Fragment) n=1 Tax=Plasmodium berghei RepID=Q4YWL7_PLABE Length = 467 Score = 159 bits (403), Expect = 9e-38 Identities = 78/183 (42%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 +D I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P+I + P+ QY P Sbjct: 29 DDDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNIEIKPQPQYRPD 88 Query: 184 RDAPDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357 + DEN ++ +KFGQL + +P F E N L+P +ARLRNLTYS+ +Y D+ ++T Sbjct: 89 K---DENNNIIYSLKFGQLSLDRPFFDEKNLVNKNLWPQEARLRNLTYSSAIYIDIEQST 145 Query: 358 VRLVDPETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534 ++D T ++ + E++ +GR+P+ML+S FC L E +++ +GEC +DQGGYF Sbjct: 146 Y-IIDENTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLAENDISDMGECSLDQGGYF 204 Query: 535 IIN 543 I+N Sbjct: 205 IVN 207 [99][TOP] >UniRef100_UPI0001865901 hypothetical protein BRAFLDRAFT_125505 n=1 Tax=Branchiostoma floridae RepID=UPI0001865901 Length = 1176 Score = 159 bits (402), Expect = 1e-37 Identities = 82/177 (46%), Positives = 117/177 (66%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q++ Sbjct: 22 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHLTME-- 79 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 + + ++ F Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+ Sbjct: 80 AEVPPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK--- 136 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 137 --DGEERIETQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 190 [100][TOP] >UniRef100_UPI000151B416 hypothetical protein PGUG_02833 n=1 Tax=Pichia guilliermondii ATCC 6260 RepID=UPI000151B416 Length = 1291 Score = 159 bits (402), Expect = 1e-37 Identities = 85/184 (46%), Positives = 116/184 (63%), Gaps = 8/184 (4%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I+ ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q+ D Sbjct: 73 ITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEED-- 130 Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375 EN + I FG++ +SKP TE +G ++P +ARLRNLTYS+PLY D+TK ++ D Sbjct: 131 HENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDN 190 Query: 376 -------ETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531 E EEE EEP KV++G+VP+MLRS+FC+L +L E E L EC D GGY Sbjct: 191 AGNEHELEWIEEEIKDEEPLTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGY 250 Query: 532 FIIN 543 F+IN Sbjct: 251 FVIN 254 [101][TOP] >UniRef100_C5LHP3 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LHP3_9ALVE Length = 993 Score = 159 bits (402), Expect = 1e-37 Identities = 84/184 (45%), Positives = 123/184 (66%), Gaps = 7/184 (3%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I +D+W V +AYF + GLV QQ+ S+++FV+ MQ +VDE P I +IP++Q G ++ Sbjct: 108 EIVQDDSWAVADAYFKDKGLVSQQVGSFDDFVTYKMQEIVDECPPITIIPQNQV--GWES 165 Query: 193 PDE----NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 ++ +++FGQL ++KP E +G +L PNQARLRNLTYS+P+Y +VT+TT Sbjct: 166 EGARVYMDSSFLVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTY 225 Query: 361 RLVDPE--TGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531 L DP+ E++ SE+ K+ IGR+P+ML+S +C L N E L +GEC DQGGY Sbjct: 226 ALADPDDPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGY 285 Query: 532 FIIN 543 FIIN Sbjct: 286 FIIN 289 [102][TOP] >UniRef100_C3Y5U9 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae RepID=C3Y5U9_BRAFL Length = 1104 Score = 159 bits (402), Expect = 1e-37 Identities = 82/177 (46%), Positives = 117/177 (66%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q++ Sbjct: 22 DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHLTME-- 79 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 + + ++ F Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT V+ Sbjct: 80 AEVPPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK--- 136 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GEE ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 137 --DGEERIETQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 190 [103][TOP] >UniRef100_B3LYR3 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae RepID=B3LYR3_DROAN Length = 1176 Score = 159 bits (402), Expect = 1e-37 Identities = 81/173 (46%), Positives = 111/173 (64%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L E Q+ G + Sbjct: 25 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 + +KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT Sbjct: 83 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT------KNVE 136 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 ++ + +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 137 GQDPIETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189 [104][TOP] >UniRef100_A3GFG5 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis RepID=A3GFG5_PICST Length = 1232 Score = 159 bits (402), Expect = 1e-37 Identities = 85/184 (46%), Positives = 116/184 (63%), Gaps = 8/184 (4%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I+ ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q+ D Sbjct: 18 ITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDD-- 75 Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375 EN + I FG++ +SKP TE +G ++P +ARLRNLTYS+PLY D+TK + D Sbjct: 76 HENRRYEITFGKIYISKPMQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVFKSDDN 135 Query: 376 -------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531 E EE+ EEP+ KVF+G+VP+MLRS+FC+L +L E E L EC D GGY Sbjct: 136 RRKENELEWVEEKVEDEEPQQKVFLGKVPIMLRSKFCMLRDLGEHEFFELKECPYDMGGY 195 Query: 532 FIIN 543 F+IN Sbjct: 196 FVIN 199 [105][TOP] >UniRef100_Q6CAD6 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CAD6_YARLI Length = 1229 Score = 159 bits (401), Expect = 2e-37 Identities = 83/188 (44%), Positives = 117/188 (62%), Gaps = 9/188 (4%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D +I+AED W VI+++F+E GLV QQL S++EF+ T+Q LV E ++L Q+ Sbjct: 13 DTEITAEDCWTVISSFFNEKGLVSQQLDSFDEFIETTIQELVWEDRTLILDQPAQHTTPN 72 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 D ++N + I FG++ +S+P TE +G +YP +AR RNLTYS+PLY D+ K + Sbjct: 73 D--NQNKRFEITFGKIYLSRPTMTEADGSTHPMYPQEARARNLTYSSPLYVDMKKRVLFS 130 Query: 367 VDPETGEEE--------ATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVD 519 +D E EEP KV+IG+VP+MLRS+FC+L L E +L L EC D Sbjct: 131 IDDPARPEADVVWNPIPGEVEEPVSKVYIGKVPIMLRSKFCILRGLRENDLYELNECPYD 190 Query: 520 QGGYFIIN 543 QGGYF+IN Sbjct: 191 QGGYFVIN 198 [106][TOP] >UniRef100_Q4Y5W4 DNA-directed RNA polymerase II second largest subunit, putative (Fragment) n=1 Tax=Plasmodium chabaudi RepID=Q4Y5W4_PLACH Length = 727 Score = 158 bits (399), Expect = 3e-37 Identities = 80/184 (43%), Positives = 123/184 (66%), Gaps = 4/184 (2%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 +D I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P I + P+ QY P Sbjct: 27 DDDQINEEDSWVVIGSFFG-HGLVNQQIESYNDFIEYRMQEIIDEHPHIEIKPQPQYRPD 85 Query: 184 RDAPDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357 +D ENT ++ +KFGQL + +P F E N L+P +ARLRNLTYS+ +Y D+ ++T Sbjct: 86 KD---ENTNIIYSLKFGQLSLDRPFFDEKNLVNKNLWPQEARLRNLTYSSAIYIDIEQST 142 Query: 358 VRLVDPETGEEEATSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531 + ET +++ E+ E++ +GR+P+ML+S FC L E +++ +GEC +DQGGY Sbjct: 143 YMI--DETTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLPENDISDMGECSLDQGGY 200 Query: 532 FIIN 543 FI+N Sbjct: 201 FIVN 204 [107][TOP] >UniRef100_Q6CWA5 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis RepID=Q6CWA5_KLULA Length = 1221 Score = 157 bits (398), Expect = 4e-37 Identities = 83/187 (44%), Positives = 122/187 (65%), Gaps = 8/187 (4%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 +A ISAED+W VI+A+F E GLV QQL S+N+F++ T+Q L+ E ++L Q+ Sbjct: 16 EAAISAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTET 75 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 D + + K I FG++ ++KP+ TE++G + +YP +ARLRNLTY++ L+ ++ K T + Sbjct: 76 D--NISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQA 133 Query: 367 VDPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522 +D EE +EE K+FIGRVP+MLRS++CLL +L E +L L EC D Sbjct: 134 IDIPGRDLKYEIITEESEENEENNKIFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDM 193 Query: 523 GGYFIIN 543 GGYFIIN Sbjct: 194 GGYFIIN 200 [108][TOP] >UniRef100_Q5A8Y5 DNA-directed RNA polymerase n=2 Tax=Candida albicans RepID=Q5A8Y5_CANAL Length = 1234 Score = 157 bits (398), Expect = 4e-37 Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 7/186 (3%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I+ ED W VI ++F E GLV QQL S++EFV ++Q LV E ++L Q+ + Sbjct: 17 DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEK 76 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 D EN + I FG++ +SKP+ TE +G ++P +ARLRNLTYS+PLY D+T + Sbjct: 77 D--HENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKS 134 Query: 367 VDPETGEEEAT--SEEPEK-----VFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525 D + + E EEP+K VF+G+VP+MLRS+FC+L +L E E L EC D G Sbjct: 135 DDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMG 194 Query: 526 GYFIIN 543 GYF+IN Sbjct: 195 GYFVIN 200 [109][TOP] >UniRef100_B9W6V2 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36 RepID=B9W6V2_CANDC Length = 1234 Score = 157 bits (398), Expect = 4e-37 Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 7/186 (3%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I+ ED W VI ++F E GLV QQL S++EFV ++Q LV E ++L Q+ + Sbjct: 17 DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEK 76 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 D EN + I FG++ +SKP+ TE +G ++P +ARLRNLTYS+PLY D+T + Sbjct: 77 D--HENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKS 134 Query: 367 VDPETGEEEAT--SEEPEK-----VFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525 D + + E EEP+K VF+G+VP+MLRS+FC+L +L E E L EC D G Sbjct: 135 DDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMG 194 Query: 526 GYFIIN 543 GYF+IN Sbjct: 195 GYFVIN 200 [110][TOP] >UniRef100_Q7RQI2 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii RepID=Q7RQI2_PLAYO Length = 1312 Score = 157 bits (396), Expect = 6e-37 Identities = 77/183 (42%), Positives = 122/183 (66%), Gaps = 3/183 (1%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 ++ I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P+I + P+ QY P Sbjct: 29 DEDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNIEIKPQPQYRPD 88 Query: 184 RDAPDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357 + DEN ++ +KFGQL + +P F E N L+P +ARLRNLTYS+ +Y D+ ++T Sbjct: 89 K---DENNNIIYSLKFGQLSLDRPFFDEKNLINKNLWPQEARLRNLTYSSAIYIDIEQST 145 Query: 358 VRLVDPETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534 +VD T ++ + E++ +GR+P+ML+S FC L + +++ +GEC +DQGGYF Sbjct: 146 Y-IVDENTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLPDNDISDMGECSLDQGGYF 204 Query: 535 IIN 543 I+N Sbjct: 205 IVN 207 [111][TOP] >UniRef100_Q27826 DNA-directed RNA polymerase n=1 Tax=Euplotes octocarinatus RepID=Q27826_EUPOC Length = 1194 Score = 157 bits (396), Expect = 6e-37 Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 3/182 (1%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG- 183 D +I+ EDAW VI AYFD+HGLV QQ+ S++ F+S T+Q +V E+ I + PE Q+ PG Sbjct: 29 DDEITQEDAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDIVTENNTISIQPELQFAPGS 88 Query: 184 RDAPDENTKVVIKFGQLRVS-KPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 + EN K I GQ+RV+ KP F E + + ++PN+ARLRNLTY T LY +V K Sbjct: 89 MNESRENIKYDIILGQVRVNEKPRFKEFDDKYNVIFPNEARLRNLTYQTSLYVEVKKQD- 147 Query: 361 RLVDPETGEEEATSEEPEK-VFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFI 537 V + G E E+ EK V++G+VPVM+RS FC L+ ++E E + EC DQGGYFI Sbjct: 148 -KVVEQDGSEVIIDEQTEKEVYMGKVPVMVRSGFCSLNGIDESERWEMKECFHDQGGYFI 206 Query: 538 IN 543 IN Sbjct: 207 IN 208 [112][TOP] >UniRef100_C5DLS0 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DLS0_LACTC Length = 1220 Score = 157 bits (396), Expect = 6e-37 Identities = 81/187 (43%), Positives = 122/187 (65%), Gaps = 7/187 (3%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 ++A I+AED+W VI+A+F E GLV QQL S+N+F++ T+Q + E ++L Q+ Sbjct: 17 DEASITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDSIVEDSTLILEQLAQHTT- 75 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 +A + + K I FG++ ++KP+ TE++G + +YP +ARLRNLTY++ L+ ++ K T Sbjct: 76 -EADNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIRKRTYE 134 Query: 364 LVDP-------ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522 VD E +EE+ + K+FIGRVP+MLRS++CLL L E +L L EC D Sbjct: 135 AVDIPGRDLKYEVIDEESEMSDESKIFIGRVPIMLRSKYCLLDELTESDLYKLKECPFDM 194 Query: 523 GGYFIIN 543 GGYFIIN Sbjct: 195 GGYFIIN 201 [113][TOP] >UniRef100_UPI000186D6F3 DNA-directed RNA polymerase II 135 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D6F3 Length = 1175 Score = 156 bits (394), Expect = 1e-36 Identities = 80/178 (44%), Positives = 117/178 (65%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 +++ E W VIN+YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G Sbjct: 19 SELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPIIDLQAEAQHASGE- 77 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TK ++ Sbjct: 78 -IENPPHYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKKIIK-- 134 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 GE+ ++ +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 135 ---EGEDPIETKH-QKSFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 188 [114][TOP] >UniRef100_B6KB61 DNA-directed RNA polymerase n=3 Tax=Toxoplasma gondii RepID=B6KB61_TOXGO Length = 1259 Score = 155 bits (391), Expect = 2e-36 Identities = 78/177 (44%), Positives = 113/177 (63%), Gaps = 1/177 (0%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 + + W V++++F HGLV QQL+S+N+FVS +Q ++DE P I + P QY P + Sbjct: 86 VDQDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPTPQYRPEEEV- 144 Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375 + N +K QL +++P+ E G + L+P +AR RNLTYS+PLY DV +TT VDP Sbjct: 145 ESNVIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSSPLYVDVEQTTYT-VDP 203 Query: 376 ETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 ETG E + +V +GR+P+ML+S +C +L E +L +GEC DQGGYFIIN Sbjct: 204 ETGAERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFIIN 260 [115][TOP] >UniRef100_A8XS50 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae RepID=A8XS50_CAEBR Length = 1215 Score = 155 bits (391), Expect = 2e-36 Identities = 84/192 (43%), Positives = 117/192 (60%), Gaps = 15/192 (7%) Frame = +1 Query: 13 DISAEDAWEVINAYFDE---------------HGLVRQQLQSYNEFVSVTMQRLVDESPD 147 D E W VI+AYFDE GLVRQQL S++EFV + +QR+V++SP Sbjct: 34 DAWQEACWVVISAYFDEKVNFGFFLIKTICMFQGLVRQQLDSFDEFVQMNVQRIVEDSPP 93 Query: 148 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYST 327 + L E+Q++ G D + K +KF Q+ +SKP E +G + PN+ARLRNLTY++ Sbjct: 94 VELQSENQHL-GNDM-ENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYAS 151 Query: 328 PLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGE 507 PLY D+TK R +E + EKVF+G+VPVMLRS +C+L N+ + +L L E Sbjct: 152 PLYVDITKVVTR-------DESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNE 204 Query: 508 CHVDQGGYFIIN 543 C +D GGYF+IN Sbjct: 205 CPLDPGGYFVIN 216 [116][TOP] >UniRef100_A5KBW7 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax RepID=A5KBW7_PLAVI Length = 1339 Score = 154 bits (390), Expect = 3e-36 Identities = 77/177 (43%), Positives = 114/177 (64%), Gaps = 1/177 (0%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P I + P+ QY RD Sbjct: 31 ITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPQIEIRPQPQYRSDRD-D 89 Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375 ++N +KFGQL + +P + E N L+P +ARLRNLTYS+ +Y D+ ++T +VD Sbjct: 90 NKNVMYALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTY-VVDE 148 Query: 376 ETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 T + + E++ +GR+P+ML+S FC L E E+ +GEC DQGGYFI+N Sbjct: 149 STRSQILKEKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVN 205 [117][TOP] >UniRef100_B5RV50 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii RepID=B5RV50_DEBHA Length = 1232 Score = 154 bits (390), Expect = 3e-36 Identities = 82/184 (44%), Positives = 115/184 (62%), Gaps = 8/184 (4%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I+ E+ W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q+ D Sbjct: 20 ITPENCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDD-- 77 Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375 EN + I FG++ +SKP TE +G ++P +ARLRNLTYS+PLY D+TK ++ D Sbjct: 78 HENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVLKSDDN 137 Query: 376 -------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531 E EE+ E P+ KV++G+VP+MLRS+FC+L L E E L EC D GGY Sbjct: 138 NRVDNELEWVEEKIEDEGPQTKVYLGKVPIMLRSKFCMLRGLGEHEFYELKECPYDMGGY 197 Query: 532 FIIN 543 F+IN Sbjct: 198 FVIN 201 [118][TOP] >UniRef100_UPI00017B4CC9 UPI00017B4CC9 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B4CC9 Length = 1147 Score = 154 bits (389), Expect = 4e-36 Identities = 77/166 (46%), Positives = 114/166 (68%) Frame = +1 Query: 46 NAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKF 225 ++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G +E + ++KF Sbjct: 4 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE--VEEPPRYLLKF 61 Query: 226 GQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSE 405 Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE++ ++ Sbjct: 62 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK-----EGEDQIQTQ 116 Query: 406 EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 117 H-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 161 [119][TOP] >UniRef100_Q4T1Y4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4T1Y4_TETNG Length = 1217 Score = 154 bits (389), Expect = 4e-36 Identities = 77/166 (46%), Positives = 114/166 (68%) Frame = +1 Query: 46 NAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKF 225 ++YFDE GLVRQQL S++EF+ +++QR+V+++P I L E Q+ G +E + ++KF Sbjct: 4 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE--VEEPPRYLLKF 61 Query: 226 GQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSE 405 Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE++ ++ Sbjct: 62 EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK-----EGEDQIQTQ 116 Query: 406 EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +K FIG++P+MLRS +CLL L + +L L EC +D GGYFIIN Sbjct: 117 H-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 161 [120][TOP] >UniRef100_Q6FLD5 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Candida glabrata RepID=RPB2_CANGA Length = 1223 Score = 153 bits (387), Expect = 7e-36 Identities = 85/187 (45%), Positives = 113/187 (60%), Gaps = 8/187 (4%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 +A I+AED W VI+A+F E GLV QQL S+N+FV T+Q ++ E ++L Q+ + Sbjct: 20 NAPITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEQ 79 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 D + + K I FG++ V+KP E++G LYP +ARLRNLTYS+ L+ DVTK T Sbjct: 80 D--NISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYEA 137 Query: 367 VDPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522 VD EE E KVFIGR+P+MLRS+ C L + E +L L EC D Sbjct: 138 VDVPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDM 197 Query: 523 GGYFIIN 543 GGYFIIN Sbjct: 198 GGYFIIN 204 [121][TOP] >UniRef100_P90631 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Moneuplotes crassus RepID=P90631_EUPCR Length = 205 Score = 153 bits (386), Expect = 9e-36 Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 11/191 (5%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP- 180 N +I+ EDAW +I AYF +HGLV QQ+ S++ F+S T+Q +V E+ + ++PE QY P Sbjct: 5 NSKEITQEDAWALIKAYFQQHGLVSQQISSFDRFLSYTIQDIVAENSIMSIVPEKQYAPG 64 Query: 181 -------GRDAPDENTKVVIKFGQLRVS-KPNFTENNGEAGTLYPNQARLRNLTYSTPLY 336 G + D + + I+ GQ++V+ KP F E + + ++PN+ARLRNLTY T +Y Sbjct: 65 VRLYLTLGNENQDRDLRYEIELGQVKVNEKPRFKEYDDKYNVIFPNEARLRNLTYQTSVY 124 Query: 337 CDVTKTTVRLVDPETGEEEATSEEPEK-VFIGRVPVMLRSRFCLLHNL-NEFELNSLGEC 510 +VTK V G EE + EK V+IG+VPVM++S FC L+ + NE+E+ EC Sbjct: 125 VEVTKRD--KVTNSKGVEEVLEKRKEKEVYIGKVPVMIKSAFCSLNRIENEYEMK---EC 179 Query: 511 HVDQGGYFIIN 543 DQGGYFIIN Sbjct: 180 FFDQGGYFIIN 190 [122][TOP] >UniRef100_O96236 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7 RepID=O96236_PLAF7 Length = 1340 Score = 153 bits (386), Expect = 9e-36 Identities = 79/183 (43%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 PN+ I+ +D+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P I + P+ QY Sbjct: 27 PNE-QITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRT 85 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 RD D N +KFGQL + +P + E N L+P +ARLRNLTYS+ +Y D+ ++T Sbjct: 86 DRDEND-NIIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTY 144 Query: 361 RLVDPETGEEEATSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534 ++D E ++ E+ E++ +GR+P+ML+S FC L E E+ +GEC DQGGYF Sbjct: 145 -IID-EVTKKPVLKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYF 202 Query: 535 IIN 543 I+N Sbjct: 203 IVN 205 [123][TOP] >UniRef100_C4Y646 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y646_CLAL4 Length = 369 Score = 153 bits (386), Expect = 9e-36 Identities = 85/190 (44%), Positives = 116/190 (61%), Gaps = 14/190 (7%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL------IPEDQYV 177 I+ ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L EDQY Sbjct: 21 ITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQHTSEDQY- 79 Query: 178 PGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357 EN + I FG++ +SKP TE +G ++P +ARLRNLTYS+PLY D+TK Sbjct: 80 -------ENKRFEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKK 132 Query: 358 VRLVDP-------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECH 513 D E EE+ +E+ + KVF+G+VP+MLRS+FC+L +L E E L EC Sbjct: 133 FTSDDRIRKGNELEWIEEKVDNEDAQSKVFLGKVPIMLRSKFCMLRDLGEHEFYELKECP 192 Query: 514 VDQGGYFIIN 543 D GGYF+IN Sbjct: 193 YDMGGYFVIN 202 [124][TOP] >UniRef100_C4QZQ7 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115 RepID=C4QZQ7_PICPG Length = 1227 Score = 153 bits (386), Expect = 9e-36 Identities = 82/192 (42%), Positives = 118/192 (61%), Gaps = 13/192 (6%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I+ ED W VI+A+F+E GLV QQL S++EF+ ++Q LV E P ++L Q+ + Sbjct: 9 DDTITTEDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHTNEK 68 Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 D + N + I+FG++ +S+P TE +G ++P +ARLRNLTYS+P+Y D+ K+ Sbjct: 69 D--NINKRYEIRFGKIYLSRPTMTEADGTTHAMFPQEARLRNLTYSSPVYLDMEKSMFTS 126 Query: 367 VDPETGEEEATS-------------EEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGE 507 +D E G AT EE KV IG+VP+MLRS+FC L L+E +L + E Sbjct: 127 IDDE-GNPNATLDWQQVHEPIKDGVEEGNKVHIGKVPIMLRSKFCSLRTLDEVDLYKMKE 185 Query: 508 CHVDQGGYFIIN 543 C D GGYF+IN Sbjct: 186 CPYDMGGYFVIN 197 [125][TOP] >UniRef100_A5DVP4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus RepID=A5DVP4_LODEL Length = 1238 Score = 152 bits (385), Expect = 1e-35 Identities = 82/192 (42%), Positives = 117/192 (60%), Gaps = 13/192 (6%) Frame = +1 Query: 7 DADISA-----EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 171 DAD+ A ED W VI+++F E GLV QQL S++EF+ T+Q LV E ++L Q Sbjct: 14 DADVEAQNITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQ 73 Query: 172 YVPGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351 + +D +N + I FG++ +SKP TE +G ++P +ARLRNLTYS+P+Y D+TK Sbjct: 74 HTSEKD--HDNKRYEINFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPIYVDMTK 131 Query: 352 TTV-----RLVDPETGEEEATSE---EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGE 507 + +D E E E + KV++G+VP+MLRS+FC+L +L E E L E Sbjct: 132 RVFTSDDNKRIDNELEWHEIDVEGEKKTSKVYLGKVPIMLRSKFCMLRDLGEHEFYELKE 191 Query: 508 CHVDQGGYFIIN 543 C D GGYF+IN Sbjct: 192 CPYDMGGYFVIN 203 [126][TOP] >UniRef100_A8PVJ8 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PVJ8_MALGO Length = 1197 Score = 152 bits (383), Expect = 2e-35 Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 10/187 (5%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +IS ED W+VI A+F+E GLVRQQ+ S+NEF+S T+Q LV+ES + L DQ+ A Sbjct: 9 EISQEDCWDVIKAFFEEKGLVRQQIDSFNEFMSNTVQELVEESKSLTLEQSDQHT--GQA 66 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT-KTTVRLV 369 D+ + I+FGQ+ ++KP TE +G L+P +AR RNLTYS L+ DV+ K V+ Sbjct: 67 EDKTRRYEIEFGQIYMNKPQQTEADGSTAPLFPQEARQRNLTYSAGLHVDVSQKVLVKGE 126 Query: 370 DPETGEE-------EATSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522 + E E + T EE EKV++G+VP+ML S FC L +L + SL EC D Sbjct: 127 EDELDENGDQLWIPDPTQEEIVDEKVYLGKVPIMLHSHFCWLTDLPDEGKYSLNECPFDS 186 Query: 523 GGYFIIN 543 GGYFIIN Sbjct: 187 GGYFIIN 193 [127][TOP] >UniRef100_Q98RY5 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98RY5_GUITH Length = 1206 Score = 151 bits (382), Expect = 3e-35 Identities = 72/180 (40%), Positives = 116/180 (64%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 N+++ + W ++ +F + GLV QQ+ S+N F+ TMQ ++D+ P I + ++ PG Sbjct: 2 NNSNFDIDILWHILKLFFIQKGLVDQQINSFNNFIQNTMQDIIDDMPPITVYIDND--PG 59 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 D ++VI+ GQL +SKP + E++G L PN+ARLRNLTYS+PLYC+++ + Sbjct: 60 NDDLLSKIRMVIRLGQLHLSKPTYIEDDGLVHNLVPNEARLRNLTYSSPLYCEISTS--- 116 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 ++ E + + EK+ IGR+P+M++S+FC+L NL+ L +LGEC D GGYFI+N Sbjct: 117 IIKNEKSIDYILKQFSEKILIGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIVN 176 [128][TOP] >UniRef100_C5MEG3 DNA-directed RNA polymerase n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MEG3_CANTT Length = 1240 Score = 151 bits (382), Expect = 3e-35 Identities = 81/185 (43%), Positives = 115/185 (62%), Gaps = 9/185 (4%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I+ ED W VI+++F E GLV QQL S++EFV ++Q LV E ++L Q+ D Sbjct: 20 ITQEDCWTVISSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSVAD-- 77 Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375 +N + I+FG++ +SK + TE +G +++P +ARLRNLTYS+PLY D+TK D Sbjct: 78 HKNKRYEIEFGKIYISKTSQTEGDGTTHSVFPQEARLRNLTYSSPLYVDMTKRKFESDDN 137 Query: 376 ETGEEEATSEEPE---------KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528 + + E EE E KVF+G+VP+MLRS+FC+L+ L E E L EC D GG Sbjct: 138 KRKDNELEWEEIEVDDKEGPQSKVFLGKVPIMLRSKFCMLNGLAEHEFYELKECPYDMGG 197 Query: 529 YFIIN 543 YF+IN Sbjct: 198 YFVIN 202 [129][TOP] >UniRef100_B3L0J5 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H RepID=B3L0J5_PLAKH Length = 1371 Score = 150 bits (380), Expect = 4e-35 Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 1/177 (0%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I+ ED+W VI ++F HGLV QQ++SYN+F+ MQ ++DE P + + P+ QY D Sbjct: 72 ITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPALEIRPQAQYRSEGD-E 130 Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375 +N +KFGQL + +P + E N L+P +ARLRNLTYS+ +Y D+ ++T +VD Sbjct: 131 QKNVMYALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTY-VVDE 189 Query: 376 ETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +G + + E++ +GR+P+ML+S FC L E E+ +GEC DQGGYFI+N Sbjct: 190 SSGSQILKDKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVN 246 [130][TOP] >UniRef100_A6S7C1 DNA-directed RNA polymerase n=2 Tax=Botryotinia fuckeliana RepID=A6S7C1_BOTFB Length = 1207 Score = 150 bits (380), Expect = 4e-35 Identities = 90/212 (42%), Positives = 122/212 (57%), Gaps = 33/212 (15%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP-- 180 DA I+AED W VI+++F+ GLV QQL S++EFV TMQ LV+E+ + L DQ P Sbjct: 17 DAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTL---DQNNPPS 73 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT- 357 D P + IKFG + +S+P TE +G + P +ARLRNLTYS+PLY ++TK+T Sbjct: 74 SHDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQ 133 Query: 358 ---------------------------VRLV-DPETGEEEAT--SEEPEKVFIGRVPVML 447 RLV + E G+ E + PE+V+IG++P+ML Sbjct: 134 VAVERPVPLNELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLPMML 193 Query: 448 RSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +S FC+L L+E EL EC DQGGYFIIN Sbjct: 194 KSEFCILKGLDEDELYGWNECPYDQGGYFIIN 225 [131][TOP] >UniRef100_C5JQR0 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis SLH14081 RepID=C5JQR0_AJEDS Length = 1258 Score = 149 bits (377), Expect = 1e-34 Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P Sbjct: 17 DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSE 74 Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK Sbjct: 75 DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134 Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456 RL+ D E GEE+ E E E VFIGR+P+ML+S+ Sbjct: 135 EGRERLIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSK 194 Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +C+L +LNE L + EC D GGYFIIN Sbjct: 195 YCILKDLNEQSLYNWNECPYDSGGYFIIN 223 [132][TOP] >UniRef100_C5GBN2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3 RepID=C5GBN2_AJEDR Length = 1258 Score = 149 bits (377), Expect = 1e-34 Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P Sbjct: 17 DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSE 74 Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK Sbjct: 75 DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134 Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456 RL+ D E GEE+ E E E VFIGR+P+ML+S+ Sbjct: 135 EGRERLIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSK 194 Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +C+L +LNE L + EC D GGYFIIN Sbjct: 195 YCILKDLNEQSLYNWNECPYDSGGYFIIN 223 [133][TOP] >UniRef100_A7TTM7 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TTM7_VANPO Length = 1223 Score = 149 bits (377), Expect = 1e-34 Identities = 82/186 (44%), Positives = 112/186 (60%), Gaps = 8/186 (4%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 A I+AED+W VI+++F E GLV QQL S+N+FV T+Q ++ E ++L Q+ D Sbjct: 20 APITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESD 79 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 + + K I FG++ V+KP E++G LYP ++RLRNLTYS+ L+ DV K T V Sbjct: 80 --NISRKYEISFGKIYVTKPMVNESDGVTHALYPQESRLRNLTYSSGLFVDVNKRTYEAV 137 Query: 370 DPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525 D EE E +KVFIGR+P+MLRS+ C L + E +L L EC D G Sbjct: 138 DVPGRDLNYQLIAEESEEDNENDKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMG 197 Query: 526 GYFIIN 543 GYFIIN Sbjct: 198 GYFIIN 203 [134][TOP] >UniRef100_A6R483 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R483_AJECN Length = 1743 Score = 149 bits (377), Expect = 1e-34 Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P Sbjct: 502 DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPAE 559 Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK Sbjct: 560 DKIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 619 Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456 RL+ D E GEE+ E E E VFIGR+P+ML+S+ Sbjct: 620 EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 679 Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +C+L +LNE L + EC D GGYFIIN Sbjct: 680 YCILKDLNEQSLYNWNECPYDSGGYFIIN 708 [135][TOP] >UniRef100_C0NB61 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR RepID=C0NB61_AJECG Length = 1307 Score = 149 bits (376), Expect = 1e-34 Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P Sbjct: 119 DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPAE 176 Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK Sbjct: 177 DEIDPVVLRRYELKFGTVMLARPSVTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 236 Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456 RL+ D E GEE+ E E E VFIGR+P+ML+S+ Sbjct: 237 EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 296 Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +C+L +LNE L + EC D GGYFIIN Sbjct: 297 YCILKDLNEQSLYNWNECPYDSGGYFIIN 325 [136][TOP] >UniRef100_A7E6G0 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7E6G0_SCLS1 Length = 1267 Score = 149 bits (375), Expect = 2e-34 Identities = 84/212 (39%), Positives = 117/212 (55%), Gaps = 33/212 (15%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP-- 180 DA I+AED W VI+++FD GLV QQ+ S++EFV TMQ LV+E+ + L DQ P Sbjct: 17 DAGITAEDCWTVISSFFDAKGLVSQQIDSFDEFVQTTMQELVEENSQLTL---DQNNPPS 73 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D P + IKFG + +S+P TE +G + P +ARLRNLTYS+PLY ++TK+T Sbjct: 74 SNDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQ 133 Query: 361 RLVDPETGEEEATSEE-------------------------------PEKVFIGRVPVML 447 V+ E E+ PE+V++G++P+ML Sbjct: 134 VAVERPVPLNELDDEQEADLANGGEHPTRLVWEYEDGDPDGAKGGPAPERVYVGKLPMML 193 Query: 448 RSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +S +C L N +E +L EC DQGGYFIIN Sbjct: 194 KSEYCFLKNCDEDDLYGWNECPYDQGGYFIIN 225 [137][TOP] >UniRef100_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4 Tax=Saccharomyces cerevisiae RepID=RPB2_YEAST Length = 1224 Score = 148 bits (374), Expect = 2e-34 Identities = 83/186 (44%), Positives = 110/186 (59%), Gaps = 8/186 (4%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 A I+AED+W VI+A+F E GLV QQL S+N+FV T+Q ++ E ++L Q+ D Sbjct: 23 APITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESD 82 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 + + K I FG++ V+KP E++G LYP +ARLRNLTYS+ L+ DV K T + Sbjct: 83 --NISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAI 140 Query: 370 DPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525 D EE E KVFIGR+P+MLRS+ C L E +L L EC D G Sbjct: 141 DVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG 200 Query: 526 GYFIIN 543 GYFIIN Sbjct: 201 GYFIIN 206 [138][TOP] >UniRef100_C5DW43 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732 RepID=C5DW43_ZYGRC Length = 1224 Score = 147 bits (372), Expect = 4e-34 Identities = 82/184 (44%), Positives = 110/184 (59%), Gaps = 8/184 (4%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I+AED+W VI+A+F E GLV QQL S+N+FV T+Q ++ E ++L Q+ D Sbjct: 25 ITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESD-- 82 Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD- 372 + + K I FG++ V+KP E++G LYP +ARLRNLTYS+ L+ DV K T VD Sbjct: 83 NISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTHEAVDI 142 Query: 373 -------PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531 EE + KVFIGR+P+MLRS+ C L + E +L L EC D GGY Sbjct: 143 PGRELKYEMIAEESENDSDSGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGY 202 Query: 532 FIIN 543 FIIN Sbjct: 203 FIIN 206 [139][TOP] >UniRef100_C4Q1D7 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni RepID=C4Q1D7_SCHMA Length = 1304 Score = 147 bits (370), Expect = 6e-34 Identities = 80/178 (44%), Positives = 114/178 (64%), Gaps = 1/178 (0%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 D+ E W VI++YFDE GLVRQQL S++EF+ ++Q++V++SP I L E Q+ G Sbjct: 146 DMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGG--I 203 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 + + +KF Q+ +SK E +G + + PN ARLRNLTY+ PLY DV K +R Sbjct: 204 LETPVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIR--- 260 Query: 373 PETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +E E+P EK FIG++P+MLRS +CLL +++ +L L EC +D GGYFIIN Sbjct: 261 -----DEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIIN 313 [140][TOP] >UniRef100_A7ATA0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7ATA0_BABBO Length = 1207 Score = 146 bits (369), Expect = 8e-34 Identities = 73/174 (41%), Positives = 114/174 (65%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 ED+W+VI ++F+ HGLV QQ++S+N+FV+ MQ +D+ P I + P+ QY P D + N Sbjct: 59 EDSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETIDQHPPIEITPQPQYHP-EDERENN 117 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDV-TKTTVRLVDPET 381 +KFGQL ++KP E G ++P +ARLRNLTYS+ +Y D+ KT +R + T Sbjct: 118 IVYKLKFGQLSLNKPCVEEMAGVLKHIWPQEARLRNLTYSSQIYVDIEQKTYLRDENTNT 177 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + T P ++ +GR+P+ML+S +C +++E +L +GEC D+GGYFI+N Sbjct: 178 ETLQETITYP-RIELGRIPMMLKSAYCWTKDISEDDLADVGECPFDEGGYFIVN 230 [141][TOP] >UniRef100_Q4U9X1 DNA-directed RNA polymerase n=1 Tax=Theileria annulata RepID=Q4U9X1_THEAN Length = 1223 Score = 145 bits (367), Expect = 1e-33 Identities = 71/181 (39%), Positives = 118/181 (65%), Gaps = 1/181 (0%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 +D + + ED W+VI ++F+EHGLV QQ++S+N+F++ MQ ++D P I + P+ Y P Sbjct: 52 DDENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPPIEITPQPNYRPE 111 Query: 184 RDAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 + EN+ V +KFGQL +SKP+ E +G ++P +ARLRNLTY++ +Y D+ + T Sbjct: 112 EEV--ENSVVYKLKFGQLSLSKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQETY 169 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 D + + ++T +V + R+P+M +S +C LN+ +L+ +GEC DQGGYF++ Sbjct: 170 INEDGKLTQTDSTVY--PRVPLCRMPMMHKSSYCWTRGLNDQDLSDIGECVFDQGGYFVV 227 Query: 541 N 543 N Sbjct: 228 N 228 [142][TOP] >UniRef100_C5FJF0 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480 RepID=C5FJF0_NANOT Length = 1258 Score = 145 bits (367), Expect = 1e-33 Identities = 83/210 (39%), Positives = 119/210 (56%), Gaps = 34/210 (16%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI+A+F+ GLV QQL S++EF+S TMQ LV+E + L DQ VP D Sbjct: 19 ITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL---DQTVPPGD-- 73 Query: 196 DENTKVV-----IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 DE VV +KFG + +++P+ TE +G + P +ARLRNLTY++PLY ++K + Sbjct: 74 DEQDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIM 133 Query: 361 ----RLVDPETGEEEATSE-------------------------EPEKVFIGRVPVMLRS 453 RL+ EEE E E E +FIG++P+ML+S Sbjct: 134 EGRERLLSERDDEEEEVEEKGDEERRSRGTYLHWERKPTLEDEAEEENIFIGKMPIMLKS 193 Query: 454 RFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 ++C+L +L E L + EC D GGYF+IN Sbjct: 194 KYCILKDLGEQALYNWNECPYDSGGYFVIN 223 [143][TOP] >UniRef100_B6HM08 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HM08_PENCW Length = 1255 Score = 145 bits (366), Expect = 2e-33 Identities = 85/209 (40%), Positives = 123/209 (58%), Gaps = 30/209 (14%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E +VL DQ +P Sbjct: 17 DEGITSEDCWTVISSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVL---DQTLPPS 73 Query: 187 DAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351 + DE +V+ KFG + +S+P+ TE +G + P +ARLRNLTY++PLY VTK Sbjct: 74 E--DEIEPIVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTK 131 Query: 352 TTV-------RLVDPETGEEEA------------TSEEP------EKVFIGRVPVMLRSR 456 + + D + E E+ T + P E VFIG++P+ML+S+ Sbjct: 132 KIMEGREKIGKPTDDDDNEGESDPKTQGTYLEWETKQLPQEQMKEETVFIGKMPIMLKSK 191 Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +C+L +LNE L + EC D GGYF+IN Sbjct: 192 YCILKDLNESSLYAWNECPYDSGGYFVIN 220 [144][TOP] >UniRef100_A2QYC2 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QYC2_ASPNC Length = 1256 Score = 144 bits (363), Expect = 4e-33 Identities = 86/210 (40%), Positives = 122/210 (58%), Gaps = 31/210 (14%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L DQ +P Sbjct: 17 DEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLP-- 71 Query: 187 DAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351 + DE VV+ KFG + +S+P+ TE +G + P +ARLRNLTY++PLY VTK Sbjct: 72 PSEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTK 131 Query: 352 TTV----RLVDPETGEEEATSEEPEK----------------------VFIGRVPVMLRS 453 + RLV ++ A S E +K VFIG++P+ML+S Sbjct: 132 KIMEGRERLVADRDDDDMAESTEDKKAHGTYLQWEQKELPADQAKEETVFIGKMPIMLKS 191 Query: 454 RFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 ++C+L +L+E L + EC D GGYFIIN Sbjct: 192 KYCILKDLSEQALYNWNECPYDSGGYFIIN 221 [145][TOP] >UniRef100_A1D971 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D971_NEOFI Length = 1255 Score = 142 bits (359), Expect = 1e-32 Identities = 85/208 (40%), Positives = 122/208 (58%), Gaps = 32/208 (15%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L DQ +P D Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLPPSD-- 74 Query: 196 DENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 DE+ VV+ KFG + +S+P+ TE +G + P +ARLRNLTY++PLY +TK + Sbjct: 75 DEDDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134 Query: 361 ----RL--------VDPETGEEE---------------ATSEEPEKVFIGRVPVMLRSRF 459 RL V P+ E+ A + E VFIG++P+ML+S++ Sbjct: 135 EGRERLIADRDEDDVAPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKY 194 Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543 C+L +L+E L + EC D GGYFIIN Sbjct: 195 CILKDLSEQALYNWNECPYDSGGYFIIN 222 [146][TOP] >UniRef100_Q8SR75 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Encephalitozoon cuniculi RepID=RPB2_ENCCU Length = 1141 Score = 142 bits (359), Expect = 1e-32 Identities = 74/180 (41%), Positives = 120/180 (66%), Gaps = 1/180 (0%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 ++ + E +W +I+++F++ GLVRQQL S+++FV MQ +++ESP I++ Q P Sbjct: 2 ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIV----QSAPTA 57 Query: 187 DAPDENTKVVIKFGQLRVSKPN-FTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 + ++ ++FGQ+ VSKP +TE++G T++PN+AR+R+LTY++PL+ DVTK T+ Sbjct: 58 GIETQK-RIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLS 116 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E G + + +V G +PVMLRS +C+L+ L + +L LGEC DQGGYFI+N Sbjct: 117 ----ELGVVD--KHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVN 170 [147][TOP] >UniRef100_C1H7W3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1H7W3_PARBA Length = 1258 Score = 142 bits (358), Expect = 2e-32 Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 30/206 (14%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P D Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSEDEV 77 Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV--- 360 D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK Sbjct: 78 DPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGR 137 Query: 361 -RLV--------DPETGEEEATSE----------------EPEKVFIGRVPVMLRSRFCL 465 RL+ D + +E+ + E E VFIGR+P+ML+S++C+ Sbjct: 138 ERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCI 197 Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543 L +LNE L + EC D GGYFIIN Sbjct: 198 LKDLNEQALYNWNECPYDSGGYFIIN 223 [148][TOP] >UniRef100_C0S0L5 DNA-directed RNA polymerase n=2 Tax=Paracoccidioides brasiliensis RepID=C0S0L5_PARBP Length = 1258 Score = 142 bits (358), Expect = 2e-32 Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 30/206 (14%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P D Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSEDEV 77 Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV--- 360 D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK Sbjct: 78 DPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGR 137 Query: 361 -RLV--------DPETGEEEATSE----------------EPEKVFIGRVPVMLRSRFCL 465 RL+ D + +E+ + E E VFIGR+P+ML+S++C+ Sbjct: 138 ERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCI 197 Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543 L +LNE L + EC D GGYFIIN Sbjct: 198 LKDLNEQALYNWNECPYDSGGYFIIN 223 [149][TOP] >UniRef100_Q0CWW4 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624 RepID=Q0CWW4_ASPTN Length = 1256 Score = 142 bits (357), Expect = 2e-32 Identities = 86/210 (40%), Positives = 125/210 (59%), Gaps = 31/210 (14%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L DQ +P Sbjct: 17 DEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLPPN 73 Query: 187 DAPDENTKVV-----IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351 + DE +V +KFG + +S+P+ TE +G + P +ARLRNLTY++PLY +TK Sbjct: 74 E--DEVDPIVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITK 131 Query: 352 TTV----RLV----DPETGE--EEATSE----------------EPEKVFIGRVPVMLRS 453 + RLV + E GE E+ S+ + E VFIG++P+ML+S Sbjct: 132 RIMEGRERLVADRNEEEMGEPVEDRKSQGTYLQWEQKELPPDQAKEETVFIGKMPIMLKS 191 Query: 454 RFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 ++C+L +L+E L + EC D GGYFIIN Sbjct: 192 KYCILKDLSEQALYNWNECPYDSGGYFIIN 221 [150][TOP] >UniRef100_C5PAW2 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta SOWgp RepID=C5PAW2_COCP7 Length = 1258 Score = 142 bits (357), Expect = 2e-32 Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 31/207 (14%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P D P Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTIAPDEDDP 77 Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK Sbjct: 78 DPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEGR 137 Query: 370 DPETGEEEATSEEP-----------------------------EKVFIGRVPVMLRSRFC 462 + E + +EP E +FIG++P+ML+S++C Sbjct: 138 ERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYC 197 Query: 463 LLHNLNEFELNSLGECHVDQGGYFIIN 543 +L +L E L + EC D GGYFIIN Sbjct: 198 ILKDLGEHALYNWNECPYDSGGYFIIN 224 [151][TOP] >UniRef100_Q4N2K9 DNA-directed RNA polymerase n=1 Tax=Theileria parva RepID=Q4N2K9_THEPA Length = 1190 Score = 141 bits (356), Expect = 3e-32 Identities = 69/180 (38%), Positives = 116/180 (64%), Gaps = 1/180 (0%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D + + ED W+VI ++F+EHGLV QQ++S+N+F++ MQ ++D P I + P+ Y P Sbjct: 53 DENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDAHPPIEITPQPNYRP-- 110 Query: 187 DAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 + +EN+ + +KFGQL ++KP+ E +G ++P +ARLRNLTY++ +Y D+ + T Sbjct: 111 EEEEENSILYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQET-- 168 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 V+ + S +V + R+P+M +S +C LN+ +L+ +GEC DQGGYF++N Sbjct: 169 FVNENGKLVQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDRDLSDIGECVFDQGGYFVVN 228 [152][TOP] >UniRef100_B8NK59 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=B8NK59_ASPFN Length = 1254 Score = 141 bits (356), Expect = 3e-32 Identities = 86/206 (41%), Positives = 121/206 (58%), Gaps = 30/206 (14%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L DQ +P + Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLPPDE-- 74 Query: 196 DENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 DE VV+ KFG + +S+P+ TE +G + P +ARLRNLTY++PLY +TK + Sbjct: 75 DEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134 Query: 361 ----RLV----DPETGEEE-----------------ATSEEPEKVFIGRVPVMLRSRFCL 465 R V D E E+E A + E VFIG+VP+ML+S++C+ Sbjct: 135 EGRERSVADRDDEEIEEDEDRKARGTYLQWEQKELPADQAKEETVFIGKVPIMLKSKYCI 194 Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543 L +L+E L + EC D GGYFIIN Sbjct: 195 LKDLSEQALYNWNECPYDSGGYFIIN 220 [153][TOP] >UniRef100_A1CG49 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus RepID=A1CG49_ASPCL Length = 1257 Score = 141 bits (356), Expect = 3e-32 Identities = 84/208 (40%), Positives = 119/208 (57%), Gaps = 32/208 (15%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI+++FD GLV QQL S++EFVS TMQ LV+E + L DQ +P D Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFVSSTMQELVEEQGQVTL---DQTLPPAD-- 74 Query: 196 DENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 DE VV+ KFG + +S+P+ TE +G + P +ARLRNLTY++PLY +TK + Sbjct: 75 DEVDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134 Query: 361 R-----LVDPETGEEEATSEEPEK----------------------VFIGRVPVMLRSRF 459 + D E E ++E K VFIG++P+ML+S++ Sbjct: 135 EGRERLIADREDDETVPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKY 194 Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543 C+L +L+E L + EC D GGYFIIN Sbjct: 195 CILKDLSEQALYNWNECPYDSGGYFIIN 222 [154][TOP] >UniRef100_C4JKI6 DNA-directed RNA polymerase II 138 kDa polypeptide n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JKI6_UNCRE Length = 884 Score = 140 bits (353), Expect = 6e-32 Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 30/206 (14%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI+++F+ GLV QQL S++EF+S TMQ LV+E + L + P D P Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTIAPEEDDP 77 Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 D + +KFG + +++P+ TE +G + P +ARLRNLTY++PLY +TK Sbjct: 78 DPVLVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKVAEGR 137 Query: 370 D------------PETGEEEATS----------------EEPEKVFIGRVPVMLRSRFCL 465 + E G+EE + E E +FIG++P+ML+S++C+ Sbjct: 138 ERSLAERDEDEEPEEKGDEERRARGTYLQWAPRALPEDEEGEENIFIGKMPIMLKSKYCI 197 Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543 L +L E L + EC D GGYFIIN Sbjct: 198 LKDLGEHALYNWNECPYDSGGYFIIN 223 [155][TOP] >UniRef100_B0YC08 DNA-directed RNA polymerase n=3 Tax=Aspergillus fumigatus RepID=B0YC08_ASPFC Length = 1255 Score = 139 bits (350), Expect = 1e-31 Identities = 82/208 (39%), Positives = 121/208 (58%), Gaps = 32/208 (15%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI+++FD GLV QQL S++EF+S TMQ LV+E + L DQ +P + Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLP--PSE 74 Query: 196 DENTKVV-----IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 DE+ VV +KFG + +S+P+ TE +G + P +ARLRNLTY++PLY +TK + Sbjct: 75 DEDDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134 Query: 361 ----RLV--------DPETGEEEAT---------------SEEPEKVFIGRVPVMLRSRF 459 RL+ P+ E+ + E VFIG++P+ML+S++ Sbjct: 135 EGRERLIADRDEDDAAPDADEDRKARGTYLQWEQKELPPDQAKEETVFIGKMPIMLKSKY 194 Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543 C+L +L+E L + EC D GGYFIIN Sbjct: 195 CILKDLSEQALYNWNECPYDSGGYFIIN 222 [156][TOP] >UniRef100_Q2VA54 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q2VA54_PHANO Length = 1262 Score = 139 bits (349), Expect = 2e-31 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+ Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78 Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351 P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138 Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477 T +V+ E + E T+ EE +VFIG++PVMLRS C L N Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198 Query: 478 NEFELNSLGECHVDQGGYFIIN 543 ++ L + EC DQGGYF+IN Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220 [157][TOP] >UniRef100_Q1HDJ9 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp. triticae RepID=Q1HDJ9_9PLEO Length = 1262 Score = 139 bits (349), Expect = 2e-31 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+ Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78 Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351 P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138 Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477 T +V+ E + E T+ EE +VFIG++PVMLRS C L N Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198 Query: 478 NEFELNSLGECHVDQGGYFIIN 543 ++ L + EC DQGGYF+IN Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220 [158][TOP] >UniRef100_Q1HDJ8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q1HDJ8_PHANO Length = 1262 Score = 139 bits (349), Expect = 2e-31 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+ Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78 Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351 P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138 Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477 T +V+ E + E T+ EE +VFIG++PVMLRS C L N Sbjct: 139 ETQVVVEGEDEDMEVTTTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198 Query: 478 NEFELNSLGECHVDQGGYFIIN 543 ++ L + EC DQGGYF+IN Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220 [159][TOP] >UniRef100_Q0U9V8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q0U9V8_PHANO Length = 1252 Score = 139 bits (349), Expect = 2e-31 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+ Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78 Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351 P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138 Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477 T +V+ E + E T+ EE +VFIG++PVMLRS C L N Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198 Query: 478 NEFELNSLGECHVDQGGYFIIN 543 ++ L + EC DQGGYF+IN Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220 [160][TOP] >UniRef100_B6QUV1 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QUV1_PENMQ Length = 1254 Score = 139 bits (349), Expect = 2e-31 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 26/202 (12%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI++YFD GLV QQL S++EF+S TMQ LV+E + + + P D Sbjct: 20 ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTI--DQTITPNEDEI 77 Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV--- 360 D + IK+G + +++P+F+E NG A L P +AR RNLTY++PLY +V + Sbjct: 78 DPVVIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGR 137 Query: 361 --RLVDPETGEEE-------------------ATSEEPEKVFIGRVPVMLRSRFCLLHNL 477 + VD E +E + EE + +IGR+P+ML+S++CLL +L Sbjct: 138 ERKAVDREGEGDENEEQKPGGTYLDWEEKPLVVSEEEAKGCYIGRIPIMLKSKYCLLRDL 197 Query: 478 NEFELNSLGECHVDQGGYFIIN 543 +E L + EC D GGYFIIN Sbjct: 198 SEQSLYNWNECPYDSGGYFIIN 219 [161][TOP] >UniRef100_A9UUX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9UUX4_MONBE Length = 1166 Score = 138 bits (348), Expect = 2e-31 Identities = 78/183 (42%), Positives = 110/183 (60%), Gaps = 3/183 (1%) Frame = +1 Query: 4 NDADISAED--AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYV 177 +DADI D WEVINAYF E GLVRQQL S++ F++ T+Q+++ SP I + QY+ Sbjct: 2 DDADIDNWDEACWEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKNSPPIEVQGRLQYL 61 Query: 178 PGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357 + +E K I FGQ + P E +G ++PN RLRNLTY + + C++T T Sbjct: 62 --SNEIEEPPKHTISFGQAGFALPQHKEEDGNYDHVFPNDCRLRNLTYQSLMQCEITH-T 118 Query: 358 VRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEF-ELNSLGECHVDQGGYF 534 V +PETGE T +G+VP+MLRS++C L+ + F + + EC +D GGYF Sbjct: 119 VEQKNPETGEVTTT-----PALLGKVPMMLRSKYCTLNKMETFRDFYDINECPLDPGGYF 173 Query: 535 IIN 543 IIN Sbjct: 174 IIN 176 [162][TOP] >UniRef100_B8MU25 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MU25_TALSN Length = 1256 Score = 137 bits (346), Expect = 4e-31 Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 28/204 (13%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I++ED W VI++YFD GLV QQL S++EF+S TMQ LV+E + + + P D Sbjct: 20 ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTI--DQTITPNEDEI 77 Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDV----TKTT 357 D + IK+G + +++P+F+E NG A L P +AR RNLTY++PLY +V T+ Sbjct: 78 DPVVIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGR 137 Query: 358 VRLVDPETGE------------------EEA----TSEEPEKVFIGRVPVMLRSRFCLLH 471 R V GE EE + EE + +IGR+P+ML+S++CLL Sbjct: 138 ERKVADRDGEGLGDENEEQKPGGTYLEWEEKPLVISEEEAKGCYIGRIPIMLKSKYCLLR 197 Query: 472 NLNEFELNSLGECHVDQGGYFIIN 543 +L+E L + EC D GGYFIIN Sbjct: 198 DLSEQSLYNWNECPYDSGGYFIIN 221 [163][TOP] >UniRef100_Q872W7 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa RepID=Q872W7_NEUCR Length = 1287 Score = 137 bits (345), Expect = 5e-31 Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 42/218 (19%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 I+ ED+WEVI++YFD GLV QQ+ S+NEF + T+Q L+DE D+ L D PG Sbjct: 43 ITPEDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTL---DHPSPG---D 96 Query: 196 DENTKVVIK-----FGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT- 357 DE +++++ FG++ +S+P TE GE +L P + R RNLTYS P+YC VTK Sbjct: 97 DEGREIILRRYDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRAR 156 Query: 358 ---------VRLVDPE------TG---------EEEATSEEPEK------------VFIG 429 +L D E TG EEE+ EP K +F+G Sbjct: 157 IAVSEKKPLNQLTDDEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLG 216 Query: 430 RVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 ++P+M++S+ C L+ ++ L +L EC DQGGYFIIN Sbjct: 217 KIPIMVKSKICHLYMEDDESLFTLNECPYDQGGYFIIN 254 [164][TOP] >UniRef100_Q1HDK3 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria sp. S-93-48 RepID=Q1HDK3_9PLEO Length = 1262 Score = 137 bits (345), Expect = 5e-31 Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+ Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78 Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351 P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138 Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477 T + + E + E T+ EE +VFIG++PVMLRS C L N Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198 Query: 478 NEFELNSLGECHVDQGGYFIIN 543 ++ L + EC DQGGYF+IN Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220 [165][TOP] >UniRef100_Q1HDK2 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp. triticae RepID=Q1HDK2_9PLEO Length = 1262 Score = 137 bits (345), Expect = 5e-31 Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+ Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78 Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351 P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138 Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477 T + + E + E T+ EE +VFIG++PVMLRS C L N Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198 Query: 478 NEFELNSLGECHVDQGGYFIIN 543 ++ L + EC DQGGYF+IN Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220 [166][TOP] >UniRef100_Q1HDI7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp. avenaria RepID=Q1HDI7_9PLEO Length = 1262 Score = 137 bits (345), Expect = 5e-31 Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+ Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78 Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351 P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138 Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477 T + + E + E T+ EE +VFIG++PVMLRS C L N Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198 Query: 478 NEFELNSLGECHVDQGGYFIIN 543 ++ L + EC DQGGYF+IN Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220 [167][TOP] >UniRef100_Q1HDI5 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp. avenaria RepID=Q1HDI5_9PLEO Length = 1262 Score = 137 bits (345), Expect = 5e-31 Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+ Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78 Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351 P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D++ K Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138 Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477 T + + E + E T+ EE +VFIG++PVMLRS C L N Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198 Query: 478 NEFELNSLGECHVDQGGYFIIN 543 ++ L + EC DQGGYF+IN Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220 [168][TOP] >UniRef100_B2ADP9 DNA-directed RNA polymerase n=2 Tax=Podospora anserina RepID=B2ADP9_PODAN Length = 1278 Score = 137 bits (345), Expect = 5e-31 Identities = 87/216 (40%), Positives = 120/216 (55%), Gaps = 36/216 (16%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 ++A I+ ED W+VI+AYFD GLV QQ+ S++EF S T+Q LVDE D+ L D PG Sbjct: 35 DEAAITPEDCWDVISAYFDMKGLVSQQIDSFDEFTSSTIQSLVDEYADLTL---DHPNPG 91 Query: 184 RDAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK-T 354 D + + I FG + +SKP TE +GE +L P + R RNLTYS P+YC V+K Sbjct: 92 DDQGRDIALRRYDIHFGNVMISKPTLTEISGETTSLLPYECRDRNLTYSAPMYCKVSKRA 151 Query: 355 TVRLVDP---------------ETGE-------EEATSEEP-----------EKVFIGRV 435 V + +P ETGE EE S+ P + +F+G++ Sbjct: 152 RVAINEPVPLNELDDEQHELMRETGEHPMTIRWEEEESDMPGEGSKGENDRGDLIFLGKL 211 Query: 436 PVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 PVM++S+ C L+ ++ L L EC DQGGYFIIN Sbjct: 212 PVMVKSQICHLYGEDDESLFVLNECPYDQGGYFIIN 247 [169][TOP] >UniRef100_Q1HDK1 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp. triticae RepID=Q1HDK1_9PLEO Length = 1262 Score = 135 bits (341), Expect = 1e-30 Identities = 78/202 (38%), Positives = 113/202 (55%), Gaps = 25/202 (12%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 +I++ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D+ Sbjct: 19 EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78 Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCD------VTK 351 P + IKFG++ +++P TE +G L+P++ARLRNLTYS + D V K Sbjct: 79 DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138 Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477 T + + E + E T+ +E +VFIG++PVMLRS C L N Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDDEAARVFIGKLPVMLRSELCHLRNQ 198 Query: 478 NEFELNSLGECHVDQGGYFIIN 543 + L + EC DQGGYF+IN Sbjct: 199 TDEALFAFNECPYDQGGYFVIN 220 [170][TOP] >UniRef100_C8VK81 DNA-directed RNA polymerase (EC 2.7.7.6) [Source:UniProtKB/TrEMBL;Acc:Q9UV95] n=2 Tax=Emericella nidulans RepID=C8VK81_EMENI Length = 1252 Score = 135 bits (339), Expect = 3e-30 Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 29/208 (13%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D I++ED W VI+++FD GLV QQL S++EF+S T+Q LV+E + L DQ +P Sbjct: 17 DEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTL---DQTIP-- 71 Query: 187 DAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351 + DE VV+ KFG + +S+P E +G A + P++ARLRN+TY++PLY + K Sbjct: 72 PSEDEVDPVVVRRYELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLGIKK 131 Query: 352 TTV----RLV----DPETGEEEATS----------------EEPEKVFIGRVPVMLRSRF 459 + R+V D + G E+ + + E V IG++P+ML+S++ Sbjct: 132 KIMEGRERMVGDRDDDDMGNEDRKATGTYLQWEEMALPPDQAKEETVHIGKMPIMLKSKY 191 Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543 CLL +L E L EC D GGYFIIN Sbjct: 192 CLLRDLGEQALYDWNECPYDSGGYFIIN 219 [171][TOP] >UniRef100_A4QV56 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea RepID=A4QV56_MAGGR Length = 1276 Score = 134 bits (338), Expect = 3e-30 Identities = 81/215 (37%), Positives = 110/215 (51%), Gaps = 35/215 (16%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 ND +I+AED W VI++YFDE GLV QQ+ SYNEF + T+Q +VDE + L + Sbjct: 22 NDDEITAEDCWNVISSYFDEKGLVSQQIDSYNEFTTSTIQGIVDEYSVLTLDNPNPPDTF 81 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV- 360 P + I G + V++P E +G+ TL P + R RNLTYS PLY +TK Sbjct: 82 EGKPIRLRRYEIMLGNILVTQPTVKETDGKVSTLVPYECRDRNLTYSCPLYVKLTKKVNV 141 Query: 361 ---------RLVDPETGEEEATSEEP-------------------------EKVFIGRVP 438 L D + E + T+E P + ++IG++P Sbjct: 142 AVEEDIPLHELNDEQREEMQRTNEHPTTIRWELDRDKSHNPDEKISGEKMADMIYIGKIP 201 Query: 439 VMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 VM++SR C L + E EL L EC DQGGYFIIN Sbjct: 202 VMVKSRICYLRSQPESELFLLNECPYDQGGYFIIN 236 [172][TOP] >UniRef100_C9SGY6 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SGY6_9PEZI Length = 1260 Score = 134 bits (337), Expect = 4e-30 Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 37/217 (17%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 +DA I+ ED W VI+++FD GLV QQ+ S++EF + T+Q L+DE I L DQ P Sbjct: 17 DDASITPEDCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITL---DQPNPA 73 Query: 184 RDAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357 D+ + +KFG + VS+P+ TE +G+ TL P + R RNLTY++PLY +TK Sbjct: 74 SDSDRAIALRRYEVKFGTVMVSRPSITEADGKVSTLLPYECRDRNLTYASPLYVRITKKV 133 Query: 358 VRLVDPE----------------TG--------EEEATSEEP-----------EKVFIGR 432 V+ + TG EEE + ++P + +FIGR Sbjct: 134 SIAVENQIPLNELDDEQHDEMGRTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFIGR 193 Query: 433 VPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +P+M++S+ C L +E +L L EC DQGGYF+IN Sbjct: 194 MPIMVKSKICHLSRESENDLFMLNECPYDQGGYFVIN 230 [173][TOP] >UniRef100_C4V8X8 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01 RepID=C4V8X8_NOSCE Length = 1143 Score = 131 bits (330), Expect = 3e-29 Identities = 71/174 (40%), Positives = 110/174 (63%), Gaps = 1/174 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E +W++I+ +F++ GLV QQ+ S+++FV MQ ++DESP I + + G + Sbjct: 8 EYSWDIISKFFEQKGLVGQQIDSFDQFVKTKMQEVIDESPLITV--QSTLSAGNET---R 62 Query: 205 TKVVIKFGQLRVSKP-NFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPET 381 K+ +KFGQ+ VSKP ++TE +G TL PN+ARLR++TY + LY D+ KTT + E+ Sbjct: 63 KKITLKFGQIYVSKPPSYTEADGTTITLTPNEARLRDITYLSQLYIDIVKTT----ESES 118 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 G + ++ G +PVM++S +C + L+E EL +GEC D GGYFIIN Sbjct: 119 GVVD--QHRYSRIPFGSLPVMVKSSYCSTYKLSEEELIKIGECEYDVGGYFIIN 170 [174][TOP] >UniRef100_Q6QN96 DNA-directed RNA polymerase n=1 Tax=Cochliobolus heterostrophus RepID=Q6QN96_COCHE Length = 1208 Score = 129 bits (324), Expect = 1e-28 Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 25/204 (12%) Frame = +1 Query: 7 DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186 D + ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P Sbjct: 19 DDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDE 78 Query: 187 -DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV- 360 D P + IKFG++ +++P TE +G LYP++ARLRNLTYS + D+ + Sbjct: 79 DDNPIIKRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMV 138 Query: 361 --RLVDPETGEEE---------------------ATSEEPEKVFIGRVPVMLRSRFCLLH 471 DPE E+E +VFIG++PVMLRS C L Sbjct: 139 AREGRDPEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLR 198 Query: 472 NLNEFELNSLGECHVDQGGYFIIN 543 ++ +L +L EC DQGGYF+IN Sbjct: 199 AQSDADLFALNECPYDQGGYFVIN 222 [175][TOP] >UniRef100_Q9V115 DNA-directed RNA polymerase n=1 Tax=Pyrococcus abyssi RepID=Q9V115_PYRAB Length = 1117 Score = 128 bits (321), Expect = 3e-28 Identities = 72/181 (39%), Positives = 100/181 (55%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 P +++ +D W V+ +Y+ E GLVRQ L SYN F+ +Q +VDE I Sbjct: 4 PTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIK--------- 54 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D PD +KFG++RV +P F E +G+ LYP AR+RNLTYS PLY ++ Sbjct: 55 -PDIPDFE----VKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI- 108 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 +EP +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII Sbjct: 109 ----------RGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFII 158 Query: 541 N 543 N Sbjct: 159 N 159 [176][TOP] >UniRef100_B6YT15 DNA-directed RNA polymerase n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YT15_THEON Length = 1120 Score = 128 bits (321), Expect = 3e-28 Identities = 72/181 (39%), Positives = 101/181 (55%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 P D++ +D W V+ AY+ E GLVRQ L SYN F+ MQ++++E I Sbjct: 4 PTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDYGMQQVINEFGGIK--------- 54 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D PD +KFG++R+ +P F E G+ LYP AR+RNLTYS PLY ++ Sbjct: 55 -PDIPDFE----VKFGKIRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVV- 108 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 ++EP +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII Sbjct: 109 ----------NGIAQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFII 158 Query: 541 N 543 N Sbjct: 159 N 159 [177][TOP] >UniRef100_B2W4R0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W4R0_PYRTR Length = 1208 Score = 127 bits (319), Expect = 5e-28 Identities = 74/198 (37%), Positives = 110/198 (55%), Gaps = 25/198 (12%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR-DAPDE 201 ED W VI+++FD GLV QQL SY+EF T+Q +V E+ ++L Y P D P Sbjct: 25 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNQPYNPDEEDNPII 84 Query: 202 NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV---D 372 + +KFG++ +++P TE +G LYP++ARLRNLTYS + D+ + D Sbjct: 85 KRRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRVMVAREGRD 144 Query: 373 PETGEEEA-------------------TSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFE 489 P+ ++E +S++ +VFIG++PVMLRS C L ++ + Sbjct: 145 PDADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKLPVMLRSELCHLRAQSDAD 204 Query: 490 LNSLGECHVDQGGYFIIN 543 L +L EC DQGGYF+IN Sbjct: 205 LFALNECPYDQGGYFVIN 222 [178][TOP] >UniRef100_O59226 DNA-directed RNA polymerase n=1 Tax=Pyrococcus horikoshii RepID=O59226_PYRHO Length = 1117 Score = 126 bits (316), Expect = 1e-27 Identities = 71/181 (39%), Positives = 101/181 (55%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 P +++ +D W V+ +Y++E GLVRQ L SYN F+ +Q +VDE I Sbjct: 4 PTVVEVTPDDLWIVMESYWEEKGLVRQHLDSYNAFIERGLQEVVDEFGGIK--------- 54 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D PD +KFG++RV +P F E +G+ LYP AR+RNLTYS PLY ++ Sbjct: 55 -PDIPDFE----VKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI- 108 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 ++P +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII Sbjct: 109 ----------RGIEQDPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFII 158 Query: 541 N 543 N Sbjct: 159 N 159 [179][TOP] >UniRef100_C6A1F9 DNA-directed RNA polymerase n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A1F9_THESM Length = 1118 Score = 125 bits (314), Expect = 2e-27 Identities = 69/181 (38%), Positives = 101/181 (55%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 P +++ +D W ++ AY+DE GLVRQ L SYN F+ MQ ++ E + Sbjct: 4 PTIVEVTPDDLWHIMKAYWDEKGLVRQHLDSYNAFIEHGMQEVISEFEGVK--------- 54 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D PD +KFG++R+ +P F E +G+ LYP AR+RNLTYS P++ + Sbjct: 55 -PDIPDFE----VKFGRVRLGEPEFQEAHGQRKPLYPIDARIRNLTYSAPVFLGMIPVV- 108 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 + +EP +V IG +PVML+S+ C L+NL++ EL + GE D GGYFII Sbjct: 109 ----------KGIEQEPVEVRIGELPVMLKSKICRLYNLSDEELIAHGEDPKDPGGYFII 158 Query: 541 N 543 N Sbjct: 159 N 159 [180][TOP] >UniRef100_P31814 DNA-directed RNA polymerase subunit B n=1 Tax=Thermococcus celer RepID=RPOB_THECE Length = 1122 Score = 125 bits (314), Expect = 2e-27 Identities = 70/181 (38%), Positives = 99/181 (54%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 P D++ +D W V+ AY+ E GLVRQ L SYN F+ MQ ++DE + Sbjct: 6 PTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVK--------- 56 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D PD +KFG++R+ +P F E G+ LYP AR+RNLTYS P+Y ++ Sbjct: 57 -PDIPDFE----VKFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVV- 110 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 S+E +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFI+ Sbjct: 111 ----------NGVSQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIV 160 Query: 541 N 543 N Sbjct: 161 N 161 [181][TOP] >UniRef100_Q8U0M3 DNA-directed RNA polymerase n=1 Tax=Pyrococcus furiosus RepID=Q8U0M3_PYRFU Length = 1117 Score = 125 bits (313), Expect = 3e-27 Identities = 70/181 (38%), Positives = 101/181 (55%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 P D++ +D W V+ +Y+ E GLVRQ L SYN F+ +Q +V+E I Sbjct: 4 PTVVDVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGIK--------- 54 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D PD +KFG++RV +P F E +G+ LYP AR+RNLTY+ PLY ++ Sbjct: 55 -PDIPDFE----VKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYAAPLYLEMIPVI- 108 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 + ++P +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII Sbjct: 109 ----------KGVEQDPVEVRIGELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFII 158 Query: 541 N 543 N Sbjct: 159 N 159 [182][TOP] >UniRef100_C5LU72 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LU72_9ALVE Length = 1171 Score = 121 bits (303), Expect = 4e-26 Identities = 73/178 (41%), Positives = 100/178 (56%), Gaps = 36/178 (20%) Frame = +1 Query: 118 MQRLVDESPDIVLIPEDQ----------YVP---------------------GRDAPDE- 201 MQ +VDE P I +IP++Q Y P GR+ P Sbjct: 1 MQEIVDECPPITIIPQNQPVCRLNGLSQYDPNTSKQQQMQQNVGYVYELSRLGREGPGVY 60 Query: 202 -NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPE 378 ++ ++FGQL ++KP E +G +L PNQARLRNLTYS+P+Y +VT+TT L DP+ Sbjct: 61 MDSSFPVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYALADPD 120 Query: 379 --TGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E++ SE+ K+ IGR+P+ML+S +C L N E L +GEC DQGGYFIIN Sbjct: 121 DPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIIN 178 [183][TOP] >UniRef100_B5IVZ8 DNA-directed RNA polymerase n=1 Tax=Thermococcus barophilus MP RepID=B5IVZ8_9EURY Length = 1118 Score = 120 bits (302), Expect = 5e-26 Identities = 67/181 (37%), Positives = 99/181 (54%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 P +++ +D W V+ +Y++E GLVRQ L SYN F+ MQ +++E I Sbjct: 4 PTVVEVTPDDLWSVMESYWNEKGLVRQHLDSYNAFIDHGMQEVINEFGGIK--------- 54 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 D P+ +KFG++R+ +P F E G+ LYP AR+RNLTY+ P+Y ++ Sbjct: 55 -PDIPNFE----VKFGKIRLGEPEFQEAQGQRKPLYPMDARIRNLTYAAPIYLEMIPVV- 108 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 +EP +V IG +P+ML+S+ C L+ +E EL LGE D GGYFII Sbjct: 109 ----------NGIEQEPVEVRIGELPIMLKSKACRLYGKSEEELIKLGEDPKDPGGYFII 158 Query: 541 N 543 N Sbjct: 159 N 159 [184][TOP] >UniRef100_Q5JE32 DNA-directed RNA polymerase n=1 Tax=Thermococcus kodakarensis RepID=Q5JE32_PYRKO Length = 1123 Score = 119 bits (297), Expect = 2e-25 Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 1/177 (0%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 ++ ++ W V+ +Y+ E G VRQ L SYN F+ +Q +V+E ++V P Sbjct: 12 LTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVV-------------P 58 Query: 196 D-ENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 D N KV KFG++R+ +P F E G+ LYP AR+RNLTYS PLY ++ Sbjct: 59 DIPNFKV--KFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVV----- 111 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +EP +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFIIN Sbjct: 112 ------NGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIIN 162 [185][TOP] >UniRef100_A1RWW6 DNA-directed RNA polymerase n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RWW6_THEPD Length = 1130 Score = 118 bits (296), Expect = 2e-25 Identities = 75/179 (41%), Positives = 101/179 (56%), Gaps = 1/179 (0%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 A +S ED W V+ AY DE GLVRQ L S+N F+ +Q +VDE I + Sbjct: 8 AKLSREDRWRVVKAYVDELGLVRQHLDSFNAFLERGLQEIVDEVGGIKV----------- 56 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 E+ V IKFG++ V +P F E +G L P ARLRN+TY+ PLY +T V Sbjct: 57 ---ESQGVEIKFGKIEVGQPTFREADGSDLALTPMIARLRNITYAAPLYLTMT----LYV 109 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNL-NEFELNSLGECHVDQGGYFIIN 543 D GEE T E V+IG +P+M++S+ C+L+ L +E E+ GE D GGYFI+N Sbjct: 110 D---GEERRT----ESVYIGSLPIMVKSKKCVLYGLKSEDEIVKYGEDPYDPGGYFIVN 161 [186][TOP] >UniRef100_C4PBI7 DNA-directed RNA polymerase n=1 Tax=Epichloe festucae RepID=C4PBI7_9HYPO Length = 1261 Score = 117 bits (294), Expect = 4e-25 Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 34/214 (15%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI-PEDQYVP 180 +D I+ ED W VI+++F+ GLV QQ S++EF T+Q LV+E I L P P Sbjct: 16 DDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPP 75 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 G + IKFG + VS+P +E +G +L P + R RNLTY++PLY ++TK Sbjct: 76 GIKIALRRYE--IKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVS 133 Query: 361 RLV----------DPETGEEEATSEEPEK-----------------------VFIGRVPV 441 + D + E T E P K VF+G++P+ Sbjct: 134 AAIEREVPLHEMDDAQQAEYAKTGENPTKLIWEQEESPEDDDAGKSEDWKNMVFVGKLPI 193 Query: 442 MLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 M++S+ C L + L + EC DQGGYF+IN Sbjct: 194 MVKSKICHLSRETDESLFMVNECPYDQGGYFVIN 227 [187][TOP] >UniRef100_C5A209 DNA-directed RNA polymerase n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A209_THEGJ Length = 1122 Score = 117 bits (294), Expect = 4e-25 Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 4/181 (2%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE----SPDIVLIPEDQYVP 180 D++ +D W V+ +Y+ E GLVRQ L SYN F+ +Q +++E PDI Sbjct: 10 DVTPDDLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDI---------- 59 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 +KFG++R+ +P F E G+ LYP AR+RNLTYS PL+ + Sbjct: 60 --------PNFEVKFGKIRLGEPIFQEAQGQRRPLYPMDARIRNLTYSAPLFLE------ 105 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 L+ G E+ EP +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII Sbjct: 106 -LIPVVNGIEQ----EPVEVRIGELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFII 160 Query: 541 N 543 N Sbjct: 161 N 161 [188][TOP] >UniRef100_B7R288 DNA-directed RNA polymerase n=1 Tax=Thermococcus sp. AM4 RepID=B7R288_9EURY Length = 1122 Score = 117 bits (294), Expect = 4e-25 Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 4/181 (2%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE----SPDIVLIPEDQYVP 180 D++ +D W V+ +Y+ E GLVRQ L SYN F+ +Q +++E PDI Sbjct: 10 DVTPDDLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDI---------- 59 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360 +KFG++R+ +P F E G+ LYP AR+RNLTYS PL+ + Sbjct: 60 --------PNFEVKFGKIRLGEPIFQEAQGQRRPLYPMDARIRNLTYSAPLFLE------ 105 Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 L+ G E+ EP +V IG +P+ML+S+ C L+ L++ EL LGE D GGYFII Sbjct: 106 -LIPVVNGIEQ----EPVEVRIGELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFII 160 Query: 541 N 543 N Sbjct: 161 N 161 [189][TOP] >UniRef100_C7ZA30 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7ZA30_NECH7 Length = 1261 Score = 115 bits (289), Expect = 2e-24 Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 33/209 (15%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI-PEDQYVPGRDA 192 I+ ED W VI+++F+ GLV QQ S++EF T+Q LV+E I L P PG Sbjct: 21 ITPEDCWTVISSFFESKGLVSQQTDSFDEFTQTTIQDLVNEYSVISLDQPNPPSPPGVSI 80 Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 + IKFG + VS+P +E +G +L P + R RNLTY++PLY +TK V+ Sbjct: 81 ALRRYE--IKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSVAVE 138 Query: 373 PET----------GEEEATSEEPEK----------------------VFIGRVPVMLRSR 456 E E + T E P K VF+G++P+M++S+ Sbjct: 139 KEVPLHEMDEDQQAEYKRTGENPTKLVWELEESGDDEGKADDSWKDMVFVGKLPIMVKSK 198 Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543 C L + ++ L + EC DQGGYF+IN Sbjct: 199 ICHLSSEHDDNLFLVNECPYDQGGYFVIN 227 [190][TOP] >UniRef100_UPI000196666C hypothetical protein METSMIF1_00898 n=1 Tax=Methanobrevibacter smithii DSM 2374 RepID=UPI000196666C Length = 514 Score = 114 bits (284), Expect = 6e-24 Identities = 63/173 (36%), Positives = 95/173 (54%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E+ W++++A+FD++ LV ++SYN+F++ +Q ++D + I L EN Sbjct: 3 ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDITEPITL--------------EN 48 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 K +K G+L + KP E +G +YP +ARLRNL YS +Y ++ Sbjct: 49 GKYTLKTGKLFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMALN---------- 98 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE EKV+IG +PVML+S C LH L++ EL GE D GGYFI+N Sbjct: 99 -EEGEDNPLEKVYIGELPVMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVN 150 [191][TOP] >UniRef100_A5ULN8 DNA-dependent RNA polymerase, subunit B, RpoB n=1 Tax=Methanobrevibacter smithii ATCC 35061 RepID=A5ULN8_METS3 Length = 514 Score = 114 bits (284), Expect = 6e-24 Identities = 63/173 (36%), Positives = 95/173 (54%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E+ W++++A+FD++ LV ++SYN+F++ +Q ++D + I L EN Sbjct: 3 ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDITEPITL--------------EN 48 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 K +K G+L + KP E +G +YP +ARLRNL YS +Y ++ Sbjct: 49 GKYTLKTGKLFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMALN---------- 98 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE EKV+IG +PVML+S C LH L++ EL GE D GGYFI+N Sbjct: 99 -EEGEDNPLEKVYIGELPVMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVN 150 [192][TOP] >UniRef100_B9AEP8 Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii DSM 2375 RepID=B9AEP8_METSM Length = 514 Score = 114 bits (284), Expect = 6e-24 Identities = 63/173 (36%), Positives = 95/173 (54%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E+ W++++A+FD++ LV ++SYN+F++ +Q ++D + I L EN Sbjct: 3 ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDITEPITL--------------EN 48 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 K +K G+L + KP E +G +YP +ARLRNL YS +Y ++ Sbjct: 49 GKYTLKTGKLFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMALN---------- 98 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 EE EKV+IG +PVML+S C LH L++ EL GE D GGYFI+N Sbjct: 99 -EEGEDNPLEKVYIGELPVMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVN 150 [193][TOP] >UniRef100_UPI0000E20419 PREDICTED: DNA directed RNA polymerase II polypeptide B isoform 1 n=1 Tax=Pan troglodytes RepID=UPI0000E20419 Length = 1099 Score = 112 bits (280), Expect = 2e-23 Identities = 54/112 (48%), Positives = 77/112 (68%) Frame = +1 Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387 + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE Sbjct: 8 RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62 Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 63 EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113 [194][TOP] >UniRef100_UPI00005A2A5D PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 17 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5D Length = 1099 Score = 112 bits (280), Expect = 2e-23 Identities = 54/112 (48%), Positives = 77/112 (68%) Frame = +1 Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387 + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE Sbjct: 8 RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62 Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 63 EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113 [195][TOP] >UniRef100_Q583H5 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei RepID=Q583H5_9TRYP Length = 1190 Score = 112 bits (280), Expect = 2e-23 Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 4/184 (2%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 N ADI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+ +IV +DQ+ PG Sbjct: 34 NTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFL-LRIPRMARSLLEIVPRQDDQFDPG 92 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGT----LYPNQARLRNLTYSTPLYCDVTK 351 E + + + V P+ E +G + T L+PN+ RLR+LTY V + Sbjct: 93 VHVESEPDQYRLSLEDVVVGNPSH-EMSGFSRTEMHPLFPNECRLRDLTYDA-----VAQ 146 Query: 352 TTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531 T+ + + EE+ + + +GR+P+ML+S C L N +E EL L EC DQGGY Sbjct: 147 VTLAIRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGY 206 Query: 532 FIIN 543 FI+N Sbjct: 207 FIVN 210 [196][TOP] >UniRef100_C9ZN35 DNA-directed RNA polymerase II subunit 2, putative n=1 Tax=Trypanosoma brucei gambiense DAL972 RepID=C9ZN35_TRYBG Length = 1189 Score = 112 bits (280), Expect = 2e-23 Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 4/184 (2%) Frame = +1 Query: 4 NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183 N ADI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+ +IV +DQ+ PG Sbjct: 33 NTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFL-LRIPRMARSLLEIVPRQDDQFDPG 91 Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGT----LYPNQARLRNLTYSTPLYCDVTK 351 E + + + V P+ E +G + T L+PN+ RLR+LTY V + Sbjct: 92 VHVESEPDQYRLSLEDVVVGNPSH-EMSGFSRTEMHPLFPNECRLRDLTYDA-----VAQ 145 Query: 352 TTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531 T+ + + EE+ + + +GR+P+ML+S C L N +E EL L EC DQGGY Sbjct: 146 VTLAIRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGY 205 Query: 532 FIIN 543 FI+N Sbjct: 206 FIVN 209 [197][TOP] >UniRef100_C9J4M6 Putative uncharacterized protein POLR2B n=1 Tax=Homo sapiens RepID=C9J4M6_HUMAN Length = 207 Score = 112 bits (280), Expect = 2e-23 Identities = 54/112 (48%), Positives = 77/112 (68%) Frame = +1 Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387 + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE Sbjct: 8 RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62 Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 63 EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113 [198][TOP] >UniRef100_B4DH29 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4DH29_HUMAN Length = 1099 Score = 112 bits (280), Expect = 2e-23 Identities = 54/112 (48%), Positives = 77/112 (68%) Frame = +1 Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387 + ++KF Q+ +SKP E +G + PN+ARLRNLTYS PLY D+TKT ++ GE Sbjct: 8 RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62 Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E+ ++ +K FIG++P+MLRS +CLL+ L + +L L EC +D GGYFIIN Sbjct: 63 EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113 [199][TOP] >UniRef100_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSV4_ENTBH Length = 1138 Score = 112 bits (280), Expect = 2e-23 Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 1/173 (0%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 E+ W +I ++FD+ GLVRQQL S+N+FV + MQ ++DE+ I + + +P E Sbjct: 19 ENNWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIIDENSIISV----KSIPTAGNSIER 74 Query: 205 TKVVIKFGQLRVSKPNF-TENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPET 381 ++ + FGQ+ + P TE +G + + PN+ARLR+LTY ++ DV K E Sbjct: 75 -EIKLYFGQISILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVKKAYY-----EN 128 Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 G E S + +V G +PVM++S C L LN+ + LGEC DQGGYFII Sbjct: 129 GIEVDVS-KTIRVPFGSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFII 180 [200][TOP] >UniRef100_O27123 DNA-directed RNA polymerase subunit B'' n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=RPOB2_METTH Length = 519 Score = 112 bits (279), Expect = 2e-23 Identities = 65/173 (37%), Positives = 95/173 (54%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 + AW +++A+FD++ LV + SYN+FVS +Q ++D S I L E Sbjct: 9 KSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL--------------EQ 54 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 K ++ G++ + KP E +G +YP +ARLRNLTYS + ++ RL+ Sbjct: 55 GKYRVETGKVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM-----RLL----- 104 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +E E EKV+IG +PVML+S C LH L+ EL GE D GGYFI+N Sbjct: 105 KEGGPETEFEKVYIGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVN 157 [201][TOP] >UniRef100_Q1L5Z0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana sylvestris RepID=Q1L5Z0_NICSY Length = 1087 Score = 110 bits (276), Expect = 5e-23 Identities = 54/96 (56%), Positives = 69/96 (71%) Frame = +1 Query: 256 TENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRV 435 TE++GE TL+P ARLRNLTYS PLY DVTK ++ GEE +++ KVFIG+V Sbjct: 3 TESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKV 60 Query: 436 PVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 P+MLRS +C L+ +E +L LGEC +DQGGYFIIN Sbjct: 61 PIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 96 [202][TOP] >UniRef100_Q58444 DNA-directed RNA polymerase subunit B'' n=1 Tax=Methanocaldococcus jannaschii RepID=RPOB2_METJA Length = 498 Score = 110 bits (276), Expect = 5e-23 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 1/170 (0%) Frame = +1 Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216 E+++AYF EHGL+ Q++SYN+FV +Q+++DE I E + G Sbjct: 6 ELVDAYFKEHGLIDHQIESYNDFVENRLQKIIDEVGYI----ETEITGGYK--------- 52 Query: 217 IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE-EE 393 +K G+++V KP E +G + P +AR+R+LTYS PLY ++T P GE E+ Sbjct: 53 VKLGKIKVGKPVIKEADGSIRPITPMEARIRDLTYSVPLYLEMT--------PIIGEGED 104 Query: 394 ATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 A E +V+IG +PVML S+ C L+ + EL LGE D GYFIIN Sbjct: 105 AREGETVEVYIGELPVMLGSKICHLYGKSREELIDLGEDPEDPFGYFIIN 154 [203][TOP] >UniRef100_P09844 DNA-directed RNA polymerase subunit B'' n=1 Tax=Methanothermobacter thermautotrophicus str. Winter RepID=RPOB2_METTW Length = 515 Score = 109 bits (273), Expect = 1e-22 Identities = 64/173 (36%), Positives = 94/173 (54%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 + AW +++A+FD++ LV + SYN+FVS +Q ++D S I L E Sbjct: 3 KSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL--------------EQ 48 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 + ++ G++ + KP E +G +YP +ARLRNLTYS + ++ RL+ Sbjct: 49 GQYTVETGKVTIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM-----RLL----- 98 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 +E + E EKV IG +PVML+S C LH L EL GE D GGYFI+N Sbjct: 99 KEGGSETEFEKVHIGELPVMLKSEICHLHGLGRDELIEKGEDPADLGGYFIVN 151 [204][TOP] >UniRef100_C7P939 RNA polymerase beta subunit n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P939_METFA Length = 497 Score = 109 bits (272), Expect = 1e-22 Identities = 64/169 (37%), Positives = 95/169 (56%) Frame = +1 Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216 E+++AYF EHGL+ Q++SYN+FV +Q+++DE G + + Sbjct: 3 ELVDAYFKEHGLIDHQIESYNDFVENRLQKIIDE-------------VGYIETEISGGFK 49 Query: 217 IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEA 396 +K G++++ KP E +G + P +AR+R+LTYS PLY ++T GEEE Sbjct: 50 VKLGKVKIGKPVIKEADGSIRPITPMEARIRDLTYSVPLYLEMTPII------GEGEEEV 103 Query: 397 TSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E E V+IG +PVML S+ C L+ ++ EL LGE D GYFIIN Sbjct: 104 VGETVE-VYIGELPVMLGSKICHLYGKSKEELIELGEDPEDPFGYFIIN 151 [205][TOP] >UniRef100_C5U6G2 RNA polymerase beta subunit n=1 Tax=Methanocaldococcus infernus ME RepID=C5U6G2_9EURY Length = 493 Score = 109 bits (272), Expect = 1e-22 Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 1/169 (0%) Frame = +1 Query: 40 VINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVI 219 +I+AYF EH LV QL+SYN+FV +Q++VDE + D +P E KV Sbjct: 1 MIDAYFKEHSLVEHQLESYNDFVENRLQKIVDEIGYV-----DTDIP------EGFKV-- 47 Query: 220 KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEE-EA 396 KFG++++ KP E +G + P +AR+R +TYS P+Y ++T P G+E E Sbjct: 48 KFGKIKLGKPIIKEADGSIREITPMEARIREITYSVPIYLEMT--------PIYGKEGEE 99 Query: 397 TSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E V+IG +PVML S+ CLL+ +E E+ +GE D+ GYFIIN Sbjct: 100 REGETLDVYIGELPVMLGSKICLLYGKSEEEIIKMGEDPRDRFGYFIIN 148 [206][TOP] >UniRef100_C3N7P9 DNA-directed RNA polymerase n=2 Tax=Sulfolobus islandicus RepID=C3N7P9_SULIY Length = 1131 Score = 107 bits (268), Expect = 4e-22 Identities = 61/178 (34%), Positives = 94/178 (52%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 +++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 6 SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ + Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158 [207][TOP] >UniRef100_C3MY98 DNA-directed RNA polymerase n=3 Tax=Sulfolobus islandicus RepID=C3MY98_SULIM Length = 1131 Score = 107 bits (268), Expect = 4e-22 Identities = 61/178 (34%), Positives = 94/178 (52%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 +++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 6 SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ + Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158 [208][TOP] >UniRef100_C3MRK2 DNA-directed RNA polymerase n=1 Tax=Sulfolobus islandicus L.S.2.15 RepID=C3MRK2_SULIL Length = 1131 Score = 107 bits (268), Expect = 4e-22 Identities = 61/178 (34%), Positives = 94/178 (52%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 +++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 6 SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ + Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158 [209][TOP] >UniRef100_B8YB55 DNA-directed RNA polymerase n=1 Tax=Sulfolobus shibatae B12 RepID=B8YB55_SULSH Length = 1131 Score = 107 bits (268), Expect = 4e-22 Identities = 61/178 (34%), Positives = 94/178 (52%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 +++S ++ W+VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 6 SNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ + Sbjct: 53 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158 [210][TOP] >UniRef100_Q2NEK2 RpoB2 n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEK2_METST Length = 502 Score = 106 bits (265), Expect = 1e-21 Identities = 58/173 (33%), Positives = 96/173 (55%) Frame = +1 Query: 25 EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204 ++AW +++++FDE+ +V ++SYN+F+ +Q +VD + I L ++ Sbjct: 3 KNAWSLVDSFFDEYDIVDHHIRSYNDFLDNKIQEIVDITEPITL--------------DH 48 Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384 + IK G + + KP E +G + P++ARLRNL YS +Y D+ Sbjct: 49 GEYTIKTGDVEIVKPFIKEADGSKSIIEPSEARLRNLNYSAHMYLDMALV---------- 98 Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + ++ E EKV+IG +PVML+S+ C L L++ EL +GE D GGYFI+N Sbjct: 99 KGDSDDYEMEKVYIGELPVMLKSKACHLCGLSDEELEKVGEDPQDPGGYFIVN 151 [211][TOP] >UniRef100_Q980R0 DNA-directed RNA polymerase, subunit B'' (RpoB2) n=1 Tax=Sulfolobus solfataricus RepID=Q980R0_SULSO Length = 480 Score = 106 bits (264), Expect = 1e-21 Identities = 60/178 (33%), Positives = 93/178 (52%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 ++++ ++ W VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 3 SNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 49 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ + Sbjct: 50 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 103 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N Sbjct: 104 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 155 [212][TOP] >UniRef100_C5SSJ4 DNA-directed RNA polymerase n=1 Tax=Sulfolobus solfataricus 98/2 RepID=C5SSJ4_SULSO Length = 1124 Score = 106 bits (264), Expect = 1e-21 Identities = 60/178 (33%), Positives = 93/178 (52%) Frame = +1 Query: 10 ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189 ++++ ++ W VI AYF GLVRQ L SYN+FV +Q ++DE +I Sbjct: 3 SNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 49 Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369 P E + ++ G++R+ KP E++ + P +ARLRNLTY+ PL+ + Sbjct: 50 -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 103 Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E EPE+V+IG +P+ML+S + +L +GE D GGYFI+N Sbjct: 104 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 155 [213][TOP] >UniRef100_A4I6A8 DNA-directed RNA polymerase n=1 Tax=Leishmania infantum RepID=A4I6A8_LEIIN Length = 1181 Score = 105 bits (263), Expect = 2e-21 Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 4/185 (2%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES ++ +DQY P Sbjct: 25 PND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVIPRQDDQYDP 81 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAG----TLYPNQARLRNLTYSTPLYCDVT 348 G ++ + + + + P+ ++ AG L+PN+ RLR++TY + Sbjct: 82 GVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVTLG 141 Query: 349 KTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528 V L P T V +GR+P+ML+S C L +E EL L EC DQGG Sbjct: 142 ---VELYHPHADTPHDTFLR--NVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGG 196 Query: 529 YFIIN 543 YF+IN Sbjct: 197 YFVIN 201 [214][TOP] >UniRef100_A4HIZ1 DNA-directed RNA polymerase n=1 Tax=Leishmania braziliensis RepID=A4HIZ1_LEIBR Length = 1185 Score = 105 bits (263), Expect = 2e-21 Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 4/185 (2%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES ++ +DQY P Sbjct: 29 PND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVIPRQDDQYDP 85 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAG----TLYPNQARLRNLTYSTPLYCDVT 348 G ++ + + + + P+ ++ AG L+PN+ RLR++TY + Sbjct: 86 GVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVTLG 145 Query: 349 KTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528 V L P T V +GR+P+ML+S C L +E EL L EC DQGG Sbjct: 146 ---VELYHPHADTPHDTFLR--NVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGG 200 Query: 529 YFIIN 543 YF+IN Sbjct: 201 YFVIN 205 [215][TOP] >UniRef100_A0B556 DNA-directed RNA polymerase, subunit B' n=1 Tax=Methanosaeta thermophila PT RepID=A0B556_METTP Length = 496 Score = 105 bits (263), Expect = 2e-21 Identities = 64/165 (38%), Positives = 93/165 (56%) Frame = +1 Query: 49 AYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFG 228 AYF + LV + S+NEF+ +Q+++DE I E+ YV K G Sbjct: 10 AYFTKDKLVHHHINSFNEFIDRGLQKVIDEVRIIETNIENTYV--------------KLG 55 Query: 229 QLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEE 408 ++RV KP E +G LYPN ARLRNLTY++P+ K + +VD GEE+ E Sbjct: 56 KIRVEKPVVMEADGSVERLYPNDARLRNLTYASPI-----KLEMSIVD--RGEEK----E 104 Query: 409 PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 P + IG +P+M+ S+ C L+ ++E E+ S GE +D GGYFI+N Sbjct: 105 PVEAMIGMLPIMVMSKVCNLYGMSEEEMVSYGEDPLDPGGYFIVN 149 [216][TOP] >UniRef100_A6UV52 RNA polymerase beta subunit n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UV52_META3 Length = 510 Score = 105 bits (262), Expect = 2e-21 Identities = 61/168 (36%), Positives = 93/168 (55%) Frame = +1 Query: 40 VINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVI 219 +++ +F E+ LV + SYN+FV ++Q+++DE+ P + V G + Sbjct: 6 IVDEFFKENSLVEHHINSYNKFVENSIQKVIDEAA-----PIEAEVKGG--------FKV 52 Query: 220 KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEAT 399 KFG++RV KP E +G +YP +AR+RNL+YS PLY ++T D E + E Sbjct: 53 KFGKVRVGKPINKEADGSVKEIYPVEARIRNLSYSAPLYLEITPIMGGGEDEEGNKYEVE 112 Query: 400 SEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E + +IG +PVML S C L+ +E EL +GE D GYFI+N Sbjct: 113 EGETVEAYIGELPVMLGSIICHLNGKSEDELVKMGEDARDPMGYFIVN 160 [217][TOP] >UniRef100_Q4Q6P8 DNA-directed RNA polymerase n=1 Tax=Leishmania major RepID=Q4Q6P8_LEIMA Length = 1185 Score = 105 bits (261), Expect = 3e-21 Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 4/185 (2%) Frame = +1 Query: 1 PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180 PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES ++ +DQY P Sbjct: 29 PND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVIPRQDDQYDP 85 Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENN----GEAGTLYPNQARLRNLTYSTPLYCDVT 348 G ++ + + + + P+ ++ G L+PN+ RLR++TY + Sbjct: 86 GVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFTGGPLPPLFPNECRLRDMTYDAQAQVTLG 145 Query: 349 KTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528 V L P T V +GR+P+ML+S C L +E EL L EC DQGG Sbjct: 146 ---VELYHPHADTPHDTFLR--NVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGG 200 Query: 529 YFIIN 543 YF+IN Sbjct: 201 YFVIN 205 [218][TOP] >UniRef100_Q4CRQ2 DNA-directed RNA polymerase II subunit 2, putative (Fragment) n=1 Tax=Trypanosoma cruzi RepID=Q4CRQ2_TRYCR Length = 617 Score = 104 bits (260), Expect = 4e-21 Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 3/180 (1%) Frame = +1 Query: 13 DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192 DI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+ +IV ++Q+ PG Sbjct: 33 DIDSEDIWEIISSFFREKGLVHQQIDSYNDFL-LRIPRMARSLLEIVPRQDEQFEPGTQT 91 Query: 193 PDENTKVVIKFGQLRVSKPNFTENN---GEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363 E + + + + P+ + E L+PN+ RLR+LTY + T+ Sbjct: 92 ETEPDQYRLSLEDVVIGNPSHEVSGFSRREMHPLFPNECRLRDLTYDAN-----AQVTLG 146 Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + + EE+ + + +GR+P+ML+S C L N +E EL L EC DQGGYF+I+ Sbjct: 147 IRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVIS 206 [219][TOP] >UniRef100_Q1L6C3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Homalocladium platycladum RepID=Q1L6C3_9CARY Length = 875 Score = 104 bits (259), Expect = 5e-21 Identities = 51/91 (56%), Positives = 65/91 (71%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ GEE +++ KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L++ +E +L LGEC +DQGGYFIIN Sbjct: 59 SSYCTLYHNSEKDLTELGECPLDQGGYFIIN 89 [220][TOP] >UniRef100_C9RDL0 RNA polymerase beta subunit n=1 Tax=Methanocaldococcus vulcanius M7 RepID=C9RDL0_9EURY Length = 495 Score = 103 bits (258), Expect = 6e-21 Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 1/170 (0%) Frame = +1 Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216 E+I+AYF EHGL+ Q++SYN+FV +Q ++DE G + + Sbjct: 3 EMIDAYFKEHGLIDHQIESYNDFVENRLQSIIDE-------------VGYIETEISGGYK 49 Query: 217 IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE-EE 393 +K G++++ KP E +G + + P +AR+R+LTYS PLY ++ P GE EE Sbjct: 50 VKLGKIKIGKPVIKEADGSSRKITPMEARIRDLTYSVPLYLEMI--------PIIGEGEE 101 Query: 394 ATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + +V+IG +PVML S+ C L+ + EL +GE D GYFIIN Sbjct: 102 EREGDVVEVYIGELPVMLGSKICHLYGKSREELIDMGEDPEDPLGYFIIN 151 [221][TOP] >UniRef100_Q1L6B6 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Nepenthes maxima RepID=Q1L6B6_9CARY Length = 667 Score = 103 bits (257), Expect = 8e-21 Identities = 51/91 (56%), Positives = 64/91 (70%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ GEE + +++ KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVSEAQDFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L+ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89 [222][TOP] >UniRef100_Q1L5B7 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Camellia japonica RepID=Q1L5B7_9ERIC Length = 417 Score = 103 bits (256), Expect = 1e-20 Identities = 51/91 (56%), Positives = 63/91 (69%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ GEE +++ KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L+ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89 [223][TOP] >UniRef100_A4YCQ8 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YCQ8_METS5 Length = 1124 Score = 102 bits (255), Expect = 1e-20 Identities = 59/176 (33%), Positives = 92/176 (52%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 +S +D W ++ AYF GLVRQ L S+N+F+ +Q ++DE +I+ +PG Sbjct: 2 LSVDDRWVIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEII-----TEIPG---- 52 Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375 + I+ G++RV KP E + + P +ARLRNLTY+ P++ +T Sbjct: 53 -----LKIRLGKIRVGKPRVREADKGDKEITPMEARLRNLTYAAPIFLTMTPV------- 100 Query: 376 ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E +P +V IG +P+ML+S ++ +L +GE D GGYFIIN Sbjct: 101 ----ENNIEGDPTEVHIGDIPIMLKSIADPTSEFSQDKLVEIGEDPKDPGGYFIIN 152 [224][TOP] >UniRef100_Q1L5B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eschscholzia californica RepID=Q1L5B2_ESCCA Length = 951 Score = 102 bits (254), Expect = 2e-20 Identities = 52/91 (57%), Positives = 64/91 (70%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E+ TL+P ARLRNLTYS PLY DVTK ++ EE A +++ KVFIGRVP+MLR Sbjct: 1 ESATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVAETQDFTKVFIGRVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L+ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89 [225][TOP] >UniRef100_Q1L6E0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coriaria sarmentosa RepID=Q1L6E0_9ROSI Length = 952 Score = 102 bits (253), Expect = 2e-20 Identities = 51/91 (56%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ GEE +++ KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLFQNSEKDLTELGECPYDQGGYFIIN 89 [226][TOP] >UniRef100_Q1L5A9 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Liquidambar acalycina RepID=Q1L5A9_9MAGN Length = 453 Score = 102 bits (253), Expect = 2e-20 Identities = 51/91 (56%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ GEE +++ KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLFQNSEKDLTELGECPYDQGGYFIIN 89 [227][TOP] >UniRef100_Q07DU9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays RepID=Q07DU9_MAIZE Length = 1170 Score = 101 bits (252), Expect = 3e-20 Identities = 61/180 (33%), Positives = 95/180 (52%), Gaps = 12/180 (6%) Frame = +1 Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216 E ++FDE GL+ Q+ SYNEFVS +Q L D ++++ E Y P + + Sbjct: 34 EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGGWKHAI 91 Query: 217 IKFGQLRVSKPNFTENNGEAGTLY-PNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEE 393 IKFG++++ KP F E + P ARL+N+TY++ L + + T+++ E ++ Sbjct: 92 IKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRL---IVEVTIQVYSLEKSDKS 148 Query: 394 ATS-----------EEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 T E +FIG +PVM++S CLLH+LNE EC D GGYF++ Sbjct: 149 KTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNE------SECLFDAGGYFLV 202 [228][TOP] >UniRef100_Q1DPF0 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis RepID=Q1DPF0_COCIM Length = 1152 Score = 101 bits (252), Expect = 3e-20 Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 31/173 (17%) Frame = +1 Query: 118 MQRLVDESPDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYP 291 MQ LV+E + L + P D PD + +KFG + +++P+ TE +G + P Sbjct: 1 MQELVEEQGQVTL--DQTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLP 58 Query: 292 NQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEP-------------------- 411 +ARLRNLTY++PLY +TK + E + +EP Sbjct: 59 QEARLRNLTYASPLYLGITKKIAEGRERSLAERDEDDDEPDAKGDEERRARGTYLQWEPK 118 Query: 412 ---------EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E +FIG++P+ML+S++C+L +L E L + EC D GGYFIIN Sbjct: 119 ALPEDEADEENIFIGKMPIMLKSKYCILKDLGEHALYNWNECPYDSGGYFIIN 171 [229][TOP] >UniRef100_Q1L6D7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dicentra formosa RepID=Q1L6D7_9MAGN Length = 873 Score = 101 bits (251), Expect = 4e-20 Identities = 51/91 (56%), Positives = 63/91 (69%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ EE ++E +KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFKKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L+ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89 [230][TOP] >UniRef100_Q9UV93 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichophyton rubrum RepID=Q9UV93_TRIRU Length = 1109 Score = 101 bits (251), Expect = 4e-20 Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 34/175 (19%) Frame = +1 Query: 121 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTL 285 Q LV+E + L DQ VP D DE VV+ KFG + +++P+ TE +G + Sbjct: 1 QELVEEQGQVTL---DQTVPPSD--DEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIM 55 Query: 286 YPNQARLRNLTYSTPLYCDVTKTTV----RLVDPETGEEEATSE---------------- 405 P +ARLRNLTY++PLY ++K + RL+ EEE E Sbjct: 56 LPQEARLRNLTYASPLYLGISKKIMEGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWE 115 Query: 406 ---------EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E E +FIG++P+ML+S++C+L +L E L + EC D GGYF+IN Sbjct: 116 RKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLGEQALYNWNECPYDSGGYFVIN 170 [231][TOP] >UniRef100_Q1L6D2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Euptelea polyandra RepID=Q1L6D2_9MAGN Length = 874 Score = 100 bits (249), Expect = 7e-20 Identities = 51/91 (56%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ EE ++E KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L+ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89 [232][TOP] >UniRef100_Q1L5B6 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Camellia japonica RepID=Q1L5B6_9ERIC Length = 431 Score = 100 bits (249), Expect = 7e-20 Identities = 51/91 (56%), Positives = 63/91 (69%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E +L+P ARLRNLTYS+PLY DVTK V+ EE ++E KVFIG+VP+MLR Sbjct: 1 ETASLFPKAARLRNLTYSSPLYVDVTKRVVKR--GHDCEEVTETQEFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L+ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCCLYQTSEKDLTELGECPFDQGGYFIIN 89 [233][TOP] >UniRef100_Q1L5B3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Astilbe sp. Yoshikawa s.n. RepID=Q1L5B3_9MAGN Length = 951 Score = 100 bits (249), Expect = 7e-20 Identities = 50/91 (54%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DV+K ++ GEE +++ KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVSKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLFQNSEKDLTELGECPYDQGGYFIIN 89 [234][TOP] >UniRef100_B8MJE1 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MJE1_TALSN Length = 1212 Score = 100 bits (249), Expect = 7e-20 Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 4/179 (2%) Frame = +1 Query: 19 SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198 +A D W ++ A+ GLV+Q + SYN F+ V ++++V+ S I D Sbjct: 87 TARDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVEASSTIY-------------SD 133 Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEA----GTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 ++ +KF + V P ++ ++ T+ PN+ RLR++TY+ P++ D T Sbjct: 134 ADSHFFLKFTDIYVGSPRRSDEPKDSVESDSTVTPNECRLRDMTYAAPIFVDFTY----- 188 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + G++ T +V IGR+P+MLRS C+L N EL+ L EC +D GGYFI+N Sbjct: 189 ---KRGKDNVTQR---RVPIGRMPIMLRSSKCVLSNKKPNELHLLNECPLDPGGYFIVN 241 [235][TOP] >UniRef100_Q1L5A8 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Nymphaea colorata RepID=Q1L5A8_9MAGN Length = 431 Score = 100 bits (248), Expect = 9e-20 Identities = 50/91 (54%), Positives = 61/91 (67%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ EE ++ KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDSEELVEKQDFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L+ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89 [236][TOP] >UniRef100_C5Y8Y9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5Y8Y9_SORBI Length = 1239 Score = 100 bits (248), Expect = 9e-20 Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 9/177 (5%) Frame = +1 Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216 E ++FDE GL+ Q+ SYNEFVS +Q L D ++++ E Y P + + Sbjct: 103 EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGGWKHAI 160 Query: 217 IKFGQLRVSKPNFTENNGEAGTLY-PNQARLRNLTYSTPLYCDVTKTTVRLVDPE---TG 384 IKFG++++ KP F E + P ARL+N+TY++ L +VT L + TG Sbjct: 161 IKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLKVEVTIQVYSLEKSDKSKTG 220 Query: 385 EEEATSE-----EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 E + E +FIG +PVM++S CLLH+L E EC D GGYF++ Sbjct: 221 NEGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKE------SECLFDAGGYFLV 271 [237][TOP] >UniRef100_B6QHR9 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QHR9_PENMQ Length = 1212 Score = 100 bits (248), Expect = 9e-20 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 4/179 (2%) Frame = +1 Query: 19 SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198 +A D W ++ A+ GLV+Q + SYN F+ V ++++V+ S I D Sbjct: 87 TARDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVEASSTIY-------------SD 133 Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEA----GTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366 ++ +KF + V P ++ ++ T+ PN+ RLR++TY+ P++ D T Sbjct: 134 ADSAFFLKFTDIYVGSPRRSDEPKDSVESDSTVTPNECRLRDMTYAAPIFVDFTY----- 188 Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + G+++ T +V IGR+P+MLRS C+L N E++ L EC +D GGYFI+N Sbjct: 189 ---KRGKDKVTQR---RVPIGRMPIMLRSSKCVLSNKKPNEMHLLNECPLDPGGYFIVN 241 [238][TOP] >UniRef100_Q1L6E5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Callistemon subulatus RepID=Q1L6E5_9MYRT Length = 952 Score = 99.8 bits (247), Expect = 1e-19 Identities = 49/91 (53%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DV+ ++ GEE ++ +KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVSMRVIK--KGHDGEELTEPQDLQKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L+ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89 [239][TOP] >UniRef100_B4FHF6 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FHF6_MAIZE Length = 267 Score = 99.8 bits (247), Expect = 1e-19 Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 12/180 (6%) Frame = +1 Query: 37 EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216 E ++FDE GL+ Q+ SYNEFVS +Q L D ++++ E Y P + + Sbjct: 93 EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGSWKHAI 150 Query: 217 IKFGQLRVSKPNFTENNGEAGTLY-PNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEE 393 IKFG++++ KP F E + P ARL+N+TY++ L +V T+++ E ++ Sbjct: 151 IKFGRVKLEKPVFWTGKDEVSVDFKPWHARLQNMTYASRLRVEV---TIQVYSLEKSDKS 207 Query: 394 ATS-----------EEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 T E +FIG +PVM++S CLLH+L E EC D GGYF++ Sbjct: 208 KTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKE------SECLFDAGGYFLV 261 [240][TOP] >UniRef100_Q6CEE6 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CEE6_YARLI Length = 1169 Score = 99.8 bits (247), Expect = 1e-19 Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 1/176 (0%) Frame = +1 Query: 19 SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198 +AED W ++ A+ GLV+Q L S+N FV V +++++ + ++ D Sbjct: 44 TAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKILAANQMVL-------------SD 90 Query: 199 ENTKVVIKFGQLRVSKPNFT-ENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375 + + +K+ +RV KP ++ + ++P++ RLR++TY+ P+Y D+ T R + Sbjct: 91 VDPEFYLKYKDIRVGKPGIKFDDKNDDNAIFPHECRLRDMTYAAPIYVDIEYTKERKIVI 150 Query: 376 ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 + E IG++P+MLRS C L + E ++ ++GEC +D GGYFI+N Sbjct: 151 QRNLE-----------IGKMPIMLRSSKCHLQDQTEEKMAAMGECPLDPGGYFIVN 195 [241][TOP] >UniRef100_Q5KC33 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans RepID=Q5KC33_CRYNE Length = 1129 Score = 99.8 bits (247), Expect = 1e-19 Identities = 60/174 (34%), Positives = 91/174 (52%) Frame = +1 Query: 19 SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198 + ED W+++ A+ GLV+Q L S+N FV+V ++ ++ + ++ D Sbjct: 20 TVEDKWQLLPAFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVI-------------SD 66 Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPE 378 N K I++ +RV +P + N A L P + RL + TYS P+Y DV Sbjct: 67 INPKYYIRYTDIRVGRPARHDANQVASALSPMECRLTDSTYSAPIYVDVEYM-------- 118 Query: 379 TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540 GEE+ + + V IG +PVMLRS C L NE EL +GEC +D GGYF++ Sbjct: 119 -GEEKRSKQRG--VQIGMLPVMLRSDLCNLKGKNEAELARMGECPMDPGGYFVV 169 [242][TOP] >UniRef100_Q1L6E4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chimonanthus praecox RepID=Q1L6E4_9MAGN Length = 906 Score = 99.4 bits (246), Expect = 2e-19 Identities = 50/91 (54%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ EE ++E KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C ++ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTVYQNSEKDLTELGECPYDQGGYFIIN 89 [243][TOP] >UniRef100_Q1L6D6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dillenia suffruticosa RepID=Q1L6D6_9MAGN Length = 868 Score = 99.4 bits (246), Expect = 2e-19 Identities = 50/91 (54%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ EE +++ KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQDFAKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C L+ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89 [244][TOP] >UniRef100_Q1L6C9 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Gunnera chilensis RepID=Q1L6C9_GUNCH Length = 453 Score = 99.4 bits (246), Expect = 2e-19 Identities = 49/91 (53%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ EE +++ KVFIG+VP+ML+ Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKR--GHDCEELTETQDFTKVFIGKVPIMLK 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C +H E +L LGEC +DQGGYFIIN Sbjct: 59 SSYCTVHQNTEKDLTELGECPLDQGGYFIIN 89 [245][TOP] >UniRef100_Q1L6A5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetracentron sinense RepID=Q1L6A5_9MAGN Length = 951 Score = 99.4 bits (246), Expect = 2e-19 Identities = 50/91 (54%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ EE ++E KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C ++ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTVYQNSEKDLTELGECPYDQGGYFIIN 89 [246][TOP] >UniRef100_Q976A4 DNA-directed RNA polymerase n=1 Tax=Sulfolobus tokodaii RepID=Q976A4_SULTO Length = 1126 Score = 99.4 bits (246), Expect = 2e-19 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 1/177 (0%) Frame = +1 Query: 16 ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195 ++ + WE++ ++F GLVRQ L S+N+F+ +Q+++DE +I+ +PG Sbjct: 3 LTVNERWEIVKSFFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEII-----TEIPG---- 53 Query: 196 DENTKVVIKFGQLRVSKPNFTE-NNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372 + IK G++R +P E + G L P +ARLRNLTY+ PLY + Sbjct: 54 -----LKIKLGKIRYDRPGIRETDKGPPKELTPLEARLRNLTYAVPLYLTMIPI------ 102 Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E EP +V+IG +P+ML+S N+ EL +GE D GGYFI+N Sbjct: 103 -----ENNIEGEPIEVYIGDLPIMLKSIADPTSNMTYDELIKIGEDPKDPGGYFIVN 154 [247][TOP] >UniRef100_C5M3E6 DNA-directed RNA polymerase n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M3E6_CANTT Length = 1159 Score = 99.0 bits (245), Expect = 2e-19 Identities = 58/175 (33%), Positives = 94/175 (53%) Frame = +1 Query: 19 SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198 +AED W ++ A+ GLV+Q L SYN FV V +++++ ++ ++VL D Sbjct: 38 TAEDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKII-KANELVL------------SD 84 Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPE 378 + + +K+ +RV + + + L P++ RLR+LTYS P+Y DV T R + Sbjct: 85 VDPEFYVKYLDIRVGHKSTAKPGVKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIRH 144 Query: 379 TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 E IGR+PVMLRS C+L ++E + + EC +D GGYF++N Sbjct: 145 NDLE-----------IGRMPVMLRSNKCMLEGMSEASMAQVEECPLDPGGYFVVN 188 [248][TOP] >UniRef100_Q1L6F0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aextoxicon punctatum RepID=Q1L6F0_9MAGN Length = 873 Score = 98.6 bits (244), Expect = 3e-19 Identities = 49/91 (53%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ EE +++ KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDCEEVTETQDFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C ++ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTVYQNSEKDLTELGECPFDQGGYFIIN 89 [249][TOP] >UniRef100_Q1L6E1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cissus tuberosa RepID=Q1L6E1_9MAGN Length = 951 Score = 98.6 bits (244), Expect = 3e-19 Identities = 50/91 (54%), Positives = 63/91 (69%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY +VTK +R EE ++E KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVNVTKRIIR--KGHDLEEVTETQEFTKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C +++ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTVYHNSEKDLTELGECPYDQGGYFIIN 89 [250][TOP] >UniRef100_Q1L6D4 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Embothrium coccineum RepID=Q1L6D4_EMBCO Length = 706 Score = 98.6 bits (244), Expect = 3e-19 Identities = 49/91 (53%), Positives = 62/91 (68%) Frame = +1 Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450 E TL+P ARLRNLTYS PLY DVTK ++ EE +++ KVFIG+VP+MLR Sbjct: 1 ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDCEEVTETQDFAKVFIGKVPIMLR 58 Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543 S +C ++ +E +L LGEC DQGGYFIIN Sbjct: 59 SSYCTVYQNSEKDLTELGECPFDQGGYFIIN 89