AU193277 ( PFL043a12_r )

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[1][TOP]
>UniRef100_A9SJE5 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
           patens RepID=A9SJE5_PHYPA
          Length = 1185

 Score =  199 bits (506), Expect = 1e-49
 Identities = 101/179 (56%), Positives = 125/179 (69%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           + +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PGR
Sbjct: 12  EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIEIRPESQHNPGR 71

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
            A   +    I FGQ+ +SKP  TE +GE  TL+P  ARLRNLTYS PLY DVTK   R 
Sbjct: 72  QAEIGDVTYKINFGQIYLSKPMMTEADGETATLWPKAARLRNLTYSAPLYVDVTKFVTR- 130

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              E GEEE   E+  KV+IG+VP+MLRSR+C L   ++ +L  LGEC  DQGGYFIIN
Sbjct: 131 -KTEDGEEETEQEDLSKVYIGKVPIMLRSRYCTLFENSDKDLTELGECPYDQGGYFIIN 188

[2][TOP]
>UniRef100_Q1L5Y8 DNA-directed RNA polymerase n=1 Tax=Antirrhinum majus
           RepID=Q1L5Y8_ANTMA
          Length = 1200

 Score =  195 bits (496), Expect = 2e-48
 Identities = 98/179 (54%), Positives = 126/179 (70%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           + DIS EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PG+
Sbjct: 26  EEDISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 85

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
                 T   I FGQ+ +SKP  TE++GE  TL+P  ARLRNLTYS PLY DV+K  ++ 
Sbjct: 86  QPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIK- 144

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                GEE   +++  KVFIG+VP+MLRS +C L+  +E +L  LGEC +DQGGYFIIN
Sbjct: 145 -KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 202

[3][TOP]
>UniRef100_Q42877 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Solanum
           lycopersicum RepID=RPB2_SOLLC
          Length = 1191

 Score =  195 bits (495), Expect = 2e-48
 Identities = 97/180 (53%), Positives = 127/180 (70%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           ++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PG
Sbjct: 16  DEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 75

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
             +    T   I FGQ+ +SKP  TE++GE  TL+P  ARLRNLTYS PLY DVTK  ++
Sbjct: 76  HQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 135

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 GEE   +++  KVFIG+VP+MLRS +C L+  +E +L  LGEC +DQGGYFIIN
Sbjct: 136 --KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 193

[4][TOP]
>UniRef100_Q1L5Y9 DNA-directed RNA polymerase n=1 Tax=Petunia x hybrida
           RepID=Q1L5Y9_PETHY
          Length = 1195

 Score =  194 bits (494), Expect = 3e-48
 Identities = 97/179 (54%), Positives = 126/179 (70%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           + +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PG 
Sbjct: 21  EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGH 80

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
            +    T   I FGQ+ +SKP  TE++GE  TL+P  ARLRNLTYS PLY DVTK  ++ 
Sbjct: 81  QSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK- 139

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                GEE   +++  KVFIG+VP+MLRS +C L+  +E +L  LGEC +DQGGYFIIN
Sbjct: 140 -KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 197

[5][TOP]
>UniRef100_P38420 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Arabidopsis
           thaliana RepID=RPB2_ARATH
          Length = 1188

 Score =  194 bits (494), Expect = 3e-48
 Identities = 98/180 (54%), Positives = 125/180 (69%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PG
Sbjct: 17  DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 76

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
             +    T   I FGQ+ +SKP  TE++GE  TL+P  ARLRNLTYS PLY DVTK  ++
Sbjct: 77  HQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 136

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 GEE   +++  KVFIG+VP+MLRS +C L   +E +L  LGEC  DQGGYFIIN
Sbjct: 137 --KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIIN 194

[6][TOP]
>UniRef100_Q1L5B5 DNA-directed RNA polymerase n=1 Tax=Rhododendron macrophyllum
           RepID=Q1L5B5_RHOMC
          Length = 1191

 Score =  194 bits (492), Expect = 5e-48
 Identities = 97/179 (54%), Positives = 125/179 (69%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           + +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PG 
Sbjct: 17  EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGH 76

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
            +    T   I FGQ+ +SKP  TE++GE  TL+P  ARLRNLTYS PLY DVTK  ++ 
Sbjct: 77  QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK- 135

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                GEE   +++  KVFIG+VP+MLRS +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 136 -KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 193

[7][TOP]
>UniRef100_B9RZ91 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
           RepID=B9RZ91_RICCO
          Length = 1194

 Score =  194 bits (492), Expect = 5e-48
 Identities = 97/180 (53%), Positives = 126/180 (70%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           ++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PG
Sbjct: 19  DEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
             +    T   I FGQ+ +SKP  TE++GE  TL+P  ARLRNLTYS PLY DVTK  ++
Sbjct: 79  HQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 GEE   +++  KVFIG+VP+MLRS +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 139 --KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196

[8][TOP]
>UniRef100_A7PJ31 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7PJ31_VITVI
          Length = 1220

 Score =  192 bits (489), Expect = 1e-47
 Identities = 98/180 (54%), Positives = 126/180 (70%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PG
Sbjct: 18  DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 77

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
           R +    T   I FGQ+ +SKP  TE++GE  TL+P  ARLRNLTYS PLY DVTK  ++
Sbjct: 78  RQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIK 137

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                  EE   ++E  KVFIG+VP+MLRS +C ++  +E +L  LGEC  DQGGYFIIN
Sbjct: 138 --KGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIIN 195

[9][TOP]
>UniRef100_A5C1N0 DNA-directed RNA polymerase n=2 Tax=Vitis RepID=A5C1N0_VITVI
          Length = 1193

 Score =  192 bits (489), Expect = 1e-47
 Identities = 98/180 (54%), Positives = 126/180 (70%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           +D +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PG
Sbjct: 18  DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 77

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
           R +    T   I FGQ+ +SKP  TE++GE  TL+P  ARLRNLTYS PLY DVTK  ++
Sbjct: 78  RQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIK 137

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                  EE   ++E  KVFIG+VP+MLRS +C ++  +E +L  LGEC  DQGGYFIIN
Sbjct: 138 --KGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIIN 195

[10][TOP]
>UniRef100_Q1L5Z3 DNA-directed RNA polymerase n=1 Tax=Antirrhinum majus
           RepID=Q1L5Z3_ANTMA
          Length = 1198

 Score =  191 bits (484), Expect = 4e-47
 Identities = 98/179 (54%), Positives = 126/179 (70%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D DIS EDAW VI++YF+E GLVRQQL S++EF+  TMQ +VDES +I + PE Q+ PG 
Sbjct: 26  DEDISQEDAWTVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSNIEIRPESQHNPGG 85

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           ++        I FGQ+ +SKP  TE++GE  TL+P  ARLRNLTYS+PLY DVTK  V+ 
Sbjct: 86  NSDFAEAMYRISFGQIYLSKPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVTKRVVK- 144

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 EE   ++E  KVFIG+VP+MLRS +C L++L E +L  LGEC  DQGGYFI+N
Sbjct: 145 -KGFDCEEVTETQEFAKVFIGKVPIMLRSSYCSLYHLPEKDLMDLGECPYDQGGYFIVN 202

[11][TOP]
>UniRef100_Q1L5B4 DNA-directed RNA polymerase n=1 Tax=Rhododendron macrophyllum
           RepID=Q1L5B4_RHOMC
          Length = 1207

 Score =  191 bits (484), Expect = 4e-47
 Identities = 97/180 (53%), Positives = 126/180 (70%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           ++ +IS EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDE+ DI + PE Q+ PG
Sbjct: 34  DEEEISQEDAWTVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIKPESQHNPG 93

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
           R +        I FGQ+ +SKP  TE++GE  +L+P  ARLRNLTYS+PLY DVTK  V+
Sbjct: 94  RQSDFVEMVYRISFGQIYLSKPMMTESDGETASLFPKAARLRNLTYSSPLYVDVTKRVVK 153

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                  EE   ++E  KVFIG+VP+MLRS +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 154 --KGHDCEEVTETQEFTKVFIGKVPIMLRSSYCSLYQTSEKDLTELGECPFDQGGYFIIN 211

[12][TOP]
>UniRef100_B9FA12 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
           RepID=B9FA12_ORYSJ
          Length = 1218

 Score =  189 bits (481), Expect = 9e-47
 Identities = 98/181 (54%), Positives = 123/181 (67%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           P++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ P
Sbjct: 45  PDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 104

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           GR A    T   I FGQ+ +SKP  TE +GE  TL+P  ARLRNLTYS PLY DV+   +
Sbjct: 105 GRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVM 164

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
           +       EE   + E  KVFIG+VP+MLRS +C L   +E +L  LGEC  DQGGYFII
Sbjct: 165 K--KGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFII 222

Query: 541 N 543
           N
Sbjct: 223 N 223

[13][TOP]
>UniRef100_Q10G20 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=Q10G20_ORYSJ
          Length = 1222

 Score =  189 bits (481), Expect = 9e-47
 Identities = 98/181 (54%), Positives = 123/181 (67%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           P++ +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ P
Sbjct: 49  PDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 108

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           GR A    T   I FGQ+ +SKP  TE +GE  TL+P  ARLRNLTYS PLY DV+   +
Sbjct: 109 GRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVM 168

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
           +       EE   + E  KVFIG+VP+MLRS +C L   +E +L  LGEC  DQGGYFII
Sbjct: 169 K--KGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFII 226

Query: 541 N 543
           N
Sbjct: 227 N 227

[14][TOP]
>UniRef100_Q1L5Z2 DNA-directed RNA polymerase n=1 Tax=Petunia x hybrida
           RepID=Q1L5Z2_PETHY
          Length = 1203

 Score =  188 bits (477), Expect = 2e-46
 Identities = 94/177 (53%), Positives = 126/177 (71%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I+ +DAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDE+ DI + PE Q+ P R +
Sbjct: 33  EITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPARQS 92

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
              +T   IKF Q+ +S+P  TE++GE  TL+P  ARLRNLTYS+PLY DV K  ++   
Sbjct: 93  DFVDTIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVRKEVIK--K 150

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               EE +  +E  KVFIG+VP+MLRS +C L+NL+E +L  LGEC  DQGGYFI+N
Sbjct: 151 GHDYEEVSECQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVN 207

[15][TOP]
>UniRef100_B9H2V2 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
           RepID=B9H2V2_POPTR
          Length = 690

 Score =  188 bits (477), Expect = 2e-46
 Identities = 98/187 (52%), Positives = 125/187 (66%), Gaps = 8/187 (4%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D +I+ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PG 
Sbjct: 9   DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGH 68

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
            +    T   I FGQ+ +SKP  TE++GE  TL+P  ARLRNLTYS PLY DVTK  ++ 
Sbjct: 69  QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK- 127

Query: 367 VDPETGEEEATSEEPEKVFIGR--------VPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522
                GEE   +++  KVFIG+        VP+MLRS +C L+  +E +L  LGEC  DQ
Sbjct: 128 -KGHDGEEVTETQDFTKVFIGKASIMNYLFVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 186

Query: 523 GGYFIIN 543
           GGYFIIN
Sbjct: 187 GGYFIIN 193

[16][TOP]
>UniRef100_Q1L5Z1 DNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum
           RepID=Q1L5Z1_SOLLC
          Length = 1205

 Score =  186 bits (472), Expect = 9e-46
 Identities = 93/177 (52%), Positives = 124/177 (70%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I+ +DAW VI++YF+E GLVRQQL S++EF+  TMQ +VDE+ DI + PE Q+ P R  
Sbjct: 39  EITQDDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPSRQP 98

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
               T   IKF Q+ +S+P  TE++GE  TL+P  ARLRNLTYS+PLY DV K  ++   
Sbjct: 99  DFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIK--K 156

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               EE   ++E  KVFIG+VP+MLRS +C L+NL+E +L  LGEC  DQGGYFI+N
Sbjct: 157 GHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVN 213

[17][TOP]
>UniRef100_Q1L5Z4 DNA-directed RNA polymerase n=1 Tax=Nicotiana sylvestris
           RepID=Q1L5Z4_NICSY
          Length = 1203

 Score =  185 bits (470), Expect = 2e-45
 Identities = 93/177 (52%), Positives = 124/177 (70%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I+ +DAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDE+ +I + PE Q+ P R  
Sbjct: 34  EITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETANIEIRPESQHNPSRQP 93

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
               T   IKF Q+ +S+P  TE++GE  TL+P  ARLRNLTYS+PLY DV K  ++   
Sbjct: 94  DFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIK--K 151

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               EE   ++E  KVFIG+VP+MLRS +C L+NL+E +L  LGEC  DQGGYFI+N
Sbjct: 152 GHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVN 208

[18][TOP]
>UniRef100_Q54J75 DNA-directed RNA polymerase II subunit rpb2 n=1 Tax=Dictyostelium
           discoideum RepID=RPB2_DICDI
          Length = 1170

 Score =  185 bits (470), Expect = 2e-45
 Identities = 93/179 (51%), Positives = 125/179 (69%), Gaps = 1/179 (0%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           ADIS ED W VI+AYF E GLVRQQL S++EF+  TMQ ++DESP I L PE Q+ PG+ 
Sbjct: 16  ADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQA 75

Query: 190 APDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
               N     +KFGQ+ +SKP   E +G +  + PNQAR+RNLTYS PL+ D+TK TV  
Sbjct: 76  VVSNNVSTFSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITK-TVMT 133

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                G+E  T E  +++FIG+VP+MLRS++C+L+  ++ +L ++GEC  DQGGYFIIN
Sbjct: 134 GSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIIN 192

[19][TOP]
>UniRef100_Q1L5X1 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
           RepID=Q1L5X1_CHLRE
          Length = 1607

 Score =  185 bits (469), Expect = 2e-45
 Identities = 93/180 (51%), Positives = 127/180 (70%), Gaps = 1/180 (0%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D +I  ED+W VI A+FD+ GLVRQQL S+NEFV+VT+Q ++DE+P+IV+ PE Q++PG 
Sbjct: 9   DTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGV 68

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           +A +E  + +IKFGQ+ +S+P  TE +GE+  L+P +ARLRNLTY  PLY DVTKT    
Sbjct: 69  EAAEEK-EYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTR 127

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLN-EFELNSLGECHVDQGGYFIIN 543
           V     EE+    +   V +G+VP+ML+S  C LH  + E E  +LGEC  DQGGYF+IN
Sbjct: 128 VGENEVEEKT---DLSHVHLGKVPIMLKSERCNLHEASTEQEATNLGECPYDQGGYFVIN 184

[20][TOP]
>UniRef100_C5WR62 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
           RepID=C5WR62_SORBI
          Length = 1218

 Score =  185 bits (469), Expect = 2e-45
 Identities = 95/177 (53%), Positives = 120/177 (67%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I  +DAW VI+AYF+E GLVRQQL S++EF+  TMQ +VDES DI + PE Q+ PGR A
Sbjct: 64  EIGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQA 123

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
               T   I FGQ+ +SKP  TE +GE  TL+P  ARLRNLTYS PLY DV+   ++   
Sbjct: 124 EFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMK--K 181

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               EE   + +  KVFIG+VP+MLRS +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 182 GHDCEEVTETADYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIIN 238

[21][TOP]
>UniRef100_C1E1U0 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
           RepID=C1E1U0_9CHLO
          Length = 1178

 Score =  184 bits (467), Expect = 4e-45
 Identities = 92/185 (49%), Positives = 127/185 (68%), Gaps = 6/185 (3%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           + +I  EDAW VI+++F+E GL RQQL S+NEF+  TMQ +VDE  D  + PE+Q++PG 
Sbjct: 11  EEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFTIEPEEQHMPGE 70

Query: 187 DAPDE-NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
           +A  +   K  ++F Q+ +SKP  TE +G   TL+P +ARLRNLTYS PLY D+ K+T+ 
Sbjct: 71  EADGKGKKKYKVEFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYIDMAKSTIT 130

Query: 364 L---VDPETGE--EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528
               +D  TG+  E   +EE  KVF G+VP+MLRS++C LH+  + EL  LGEC  D+GG
Sbjct: 131 TTDEIDATTGKYIETIDTEEYPKVFFGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGG 190

Query: 529 YFIIN 543
           YFIIN
Sbjct: 191 YFIIN 195

[22][TOP]
>UniRef100_A4RQU3 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus
           CCE9901 RepID=A4RQU3_OSTLU
          Length = 1174

 Score =  177 bits (449), Expect = 4e-43
 Identities = 93/180 (51%), Positives = 119/180 (66%), Gaps = 1/180 (0%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           + +I  EDAW VI+++F+E GLVRQQL S+NEF+  TMQ +VDE  +I L PE Q++PG+
Sbjct: 11  EEEIGQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIELTPEHQHMPGQ 70

Query: 187 DAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
           D      K   I F Q+ +SKP  TE +G   TL+P +ARLRNLTYS PLY D+ K  V 
Sbjct: 71  DIDSMEKKTYKISFNQIYLSKPMVTEADGYTTTLFPKEARLRNLTYSAPLYVDMVK-EVT 129

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            V P+ GE     E   K FIG+VP+MLRS +C LH   + EL  LGEC  D+GGYF+IN
Sbjct: 130 TVQPD-GETTVEKEILNKNFIGKVPIMLRSDYCSLHGHTDKELTELGECPYDEGGYFVIN 188

[23][TOP]
>UniRef100_A9BK63 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK63_9CRYP
          Length = 1222

 Score =  176 bits (447), Expect = 8e-43
 Identities = 83/182 (45%), Positives = 123/182 (67%), Gaps = 2/182 (1%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           ND  I  +D W ++ ++F E+ LVRQQL S+NEF+  TMQ ++D+ P IV+  E      
Sbjct: 6   NDEIIKQDDMWIILESFFKENNLVRQQLDSFNEFIQNTMQDIIDDIPPIVIKTEFDKFKS 65

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
            +   ++ K++++FGQL +SKP F E NG   TL PN+ARLRNLTYS+PLYCD++  T+ 
Sbjct: 66  SETK-KSLKLILRFGQLHLSKPTFIEENGTTHTLLPNEARLRNLTYSSPLYCDISTITLN 124

Query: 364 LVDPETGE--EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFI 537
           + +  TGE  E    ++ +K+ +GR+P+M++SRFC+L  L   +L  +GEC +D GGYFI
Sbjct: 125 ITEELTGEIKENFLKDDHQKILLGRIPIMVKSRFCVLDKLLPMDLIRIGECPIDPGGYFI 184

Query: 538 IN 543
           IN
Sbjct: 185 IN 186

[24][TOP]
>UniRef100_Q1WMR3 DNA-directed RNA polymerase n=1 Tax=Coprinellus disseminatus
           RepID=Q1WMR3_COPDI
          Length = 1241

 Score =  174 bits (440), Expect = 5e-42
 Identities = 93/186 (50%), Positives = 125/186 (67%), Gaps = 8/186 (4%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           A+I+ ED W VI ++FD+ GLVRQQL S++EFV  TMQ LVDE+ D++L   DQ+  G D
Sbjct: 45  AEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHD 103

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT-VRL 366
             D   +  IKFGQ+ +S+P  TE +G    L+P +ARLRNLTYS+PLY ++ K   +  
Sbjct: 104 T-DMTRRYEIKFGQIYLSRPTVTEADGSVFPLFPQEARLRNLTYSSPLYVEMKKRVLIGR 162

Query: 367 VDPE--TGE-----EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
            DP+   G+     E+  + EPEK++IG+VP+MLRS FC+LH L + EL  L EC  D G
Sbjct: 163 EDPDGVPGDIQWETEQEDTGEPEKIWIGKVPIMLRSSFCILHQLRDNELYDLNECPYDSG 222

Query: 526 GYFIIN 543
           GYFIIN
Sbjct: 223 GYFIIN 228

[25][TOP]
>UniRef100_UPI00017937B7 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide n=1 Tax=Acyrthosiphon pisum
           RepID=UPI00017937B7
          Length = 1101

 Score =  171 bits (434), Expect = 2e-41
 Identities = 88/178 (49%), Positives = 119/178 (66%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           +++  E  W VIN+YFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G  
Sbjct: 20  SELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAESQHTHGEI 79

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
             D  TK  IKF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++  
Sbjct: 80  --DTPTKYQIKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIK-- 135

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               GEE   ++   K FIG++P+MLRS +CLL  LN+ +L  L EC +D GGYFIIN
Sbjct: 136 ---DGEEPVVTQH-SKSFIGKIPIMLRSTYCLLFGLNDRDLTELNECPLDPGGYFIIN 189

[26][TOP]
>UniRef100_C1ML14 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1ML14_9CHLO
          Length = 1172

 Score =  171 bits (434), Expect = 2e-41
 Identities = 91/181 (50%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLV-DESPDIVLIPEDQYVPG 183
           D +I  EDAW VI+++F+E GL RQQL S+NEF+   MQ +V DE     L PE Q+VPG
Sbjct: 10  DEEIGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHAMQEIVVDEMSSFELEPEQQHVPG 69

Query: 184 RDAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
            +      K   I F Q+ +SKP  TE +G   TL+P +ARLRNLTYS PLY D+ KT  
Sbjct: 70  EEGEGGEKKTYKISFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYVDMEKTVT 129

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
            +       EE   E+  KVFIG+VP+MLRS +C LH+  + EL  LGEC  D+GGYFII
Sbjct: 130 TVTLDSQKTEEV--EKINKVFIGKVPIMLRSEYCSLHDHTDKELTELGECPYDEGGYFII 187

Query: 541 N 543
           N
Sbjct: 188 N 188

[27][TOP]
>UniRef100_UPI00015B44D8 PREDICTED: similar to ENSANGP00000011389 n=1 Tax=Nasonia
           vitripennis RepID=UPI00015B44D8
          Length = 1175

 Score =  169 bits (428), Expect = 1e-40
 Identities = 86/173 (49%), Positives = 118/173 (68%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V+ESP I L  E Q+  G    +  
Sbjct: 24  EACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEESPQIDLQAEAQHRTGDI--ETP 81

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
           T+ ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++       
Sbjct: 82  TRHLVKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK------E 135

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            EE T  + +K FIG++P+MLRS++CLL  L++ +L  L EC +D GGYFIIN
Sbjct: 136 GEEPTETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIIN 188

[28][TOP]
>UniRef100_B6K5Q5 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
           yFS275 RepID=B6K5Q5_SCHJY
          Length = 1210

 Score =  169 bits (428), Expect = 1e-40
 Identities = 88/183 (48%), Positives = 120/183 (65%), Gaps = 7/183 (3%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           ++ ED W VI++YF+E+ L RQQL S++EFV  TMQ +VD+   + L   DQY     A 
Sbjct: 12  LTQEDCWTVISSYFEENSLARQQLSSFDEFVQNTMQEIVDDDSTLTL---DQYAQHTGAQ 68

Query: 196 DENTK-VVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            + T+   I FGQ+ +S+P  TE +G   T++P +ARLRNLTYS+PLY D+ K  +R  D
Sbjct: 69  GDYTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMRAQD 128

Query: 373 PET--GEE----EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
                GEE    E   +EP KVFIG++P+MLRS FC+L+ +++ EL  L EC  DQGGYF
Sbjct: 129 SNVPIGEEIWLTEEEDDEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYF 188

Query: 535 IIN 543
           IIN
Sbjct: 189 IIN 191

[29][TOP]
>UniRef100_B8C598 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
           CCMP1335 RepID=B8C598_THAPS
          Length = 1196

 Score =  169 bits (427), Expect = 2e-40
 Identities = 93/195 (47%), Positives = 126/195 (64%), Gaps = 15/195 (7%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           +D  ++ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ LVD+S  I + PE Q++ G
Sbjct: 4   DDMPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVG 63

Query: 184 RD------APDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYC 339
            D        +  TK V  +KFGQ+ +SKP   E +G    ++P++ARLRNLTY+ PLY 
Sbjct: 64  YDEANFDETMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYV 123

Query: 340 DVTK------TTVRLVDP-ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNS 498
           DVT         V + DP E   E  ++EE  K F+G VP+MLRS FC+L + ++ +L  
Sbjct: 124 DVTMNEYRVGNDVNVGDPAEDMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLAD 183

Query: 499 LGECHVDQGGYFIIN 543
           LGEC  DQGGYF+IN
Sbjct: 184 LGECIYDQGGYFVIN 198

[30][TOP]
>UniRef100_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8PJ53_COPC7
          Length = 742

 Score =  167 bits (422), Expect = 6e-40
 Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 8/186 (4%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           A I+ ED W VI+++FD+ GLVRQQL S++EFV  TMQ LVDE+ D++L   DQ+     
Sbjct: 27  APITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHT--GQ 84

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK-TTVRL 366
           A D   +  IKFGQ+ +S+P  TE +G    ++P +ARLRNLTYS PLY ++ K   V  
Sbjct: 85  AGDMTRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGR 144

Query: 367 VDPET-------GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
            DP          E E T  +  K++IG+VP+MLRS FC+LH L + +L  L EC  D G
Sbjct: 145 EDPAVPGDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSG 204

Query: 526 GYFIIN 543
           GYFIIN
Sbjct: 205 GYFIIN 210

[31][TOP]
>UniRef100_A8N2R8 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8N2R8_COPC7
          Length = 1222

 Score =  167 bits (422), Expect = 6e-40
 Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 8/186 (4%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           A I+ ED W VI+++FD+ GLVRQQL S++EFV  TMQ LVDE+ D++L   DQ+     
Sbjct: 27  APITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHT--GQ 84

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK-TTVRL 366
           A D   +  IKFGQ+ +S+P  TE +G    ++P +ARLRNLTYS PLY ++ K   V  
Sbjct: 85  AGDMTRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGR 144

Query: 367 VDPET-------GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
            DP          E E T  +  K++IG+VP+MLRS FC+LH L + +L  L EC  D G
Sbjct: 145 EDPAVPGDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSG 204

Query: 526 GYFIIN 543
           GYFIIN
Sbjct: 205 GYFIIN 210

[32][TOP]
>UniRef100_UPI0000D5712C PREDICTED: similar to AGAP003648-PA n=1 Tax=Tribolium castaneum
           RepID=UPI0000D5712C
          Length = 1175

 Score =  166 bits (420), Expect = 1e-39
 Identities = 83/178 (46%), Positives = 119/178 (66%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           +++  E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G  
Sbjct: 19  SELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGE- 77

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
             +  ++ ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT V+  
Sbjct: 78  -LENPSRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK-- 134

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 E+    + +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 ----DGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 188

[33][TOP]
>UniRef100_A8I9Z6 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
           RepID=A8I9Z6_CHLRE
          Length = 1634

 Score =  166 bits (420), Expect = 1e-39
 Identities = 86/179 (48%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D +I  ED+W VI A+FD+ GLVRQQL S+NEFV+VT+Q ++DE+P+IV+ PE Q++PG 
Sbjct: 17  DTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGV 76

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           +A +E  + +IKFGQ+ +S+P  TE +GE+  L+P +ARLRNLTY  PLY DVTKT    
Sbjct: 77  EAAEEK-EYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTR 135

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLN-EFELNSLGECHVDQGGYFII 540
           V     EE+  +E    V +G+VP+ML+S  C LH  + E E  +LGE +       I+
Sbjct: 136 VGENEVEEK--TETFSHVHLGKVPIMLKSERCNLHEASTEQEATNLGESYFGAAACLIV 192

[34][TOP]
>UniRef100_A8Q7K3 DNA-directed RNA polymerase n=1 Tax=Brugia malayi
           RepID=A8Q7K3_BRUMA
          Length = 1185

 Score =  166 bits (420), Expect = 1e-39
 Identities = 85/183 (46%), Positives = 121/183 (66%), Gaps = 4/183 (2%)
 Frame = +1

Query: 7   DADISAED----AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQY 174
           D +IS+E      W VI+AYFDE GLVRQQL S++EF+ + +QR+V++SP + L  E Q+
Sbjct: 16  DEEISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQH 75

Query: 175 VPGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT 354
             G    +   K  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS+PLY D+TKT
Sbjct: 76  FSGD--VENPIKFALKFDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYIDITKT 133

Query: 355 TVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
             R        EE    + EKVF+G++P+MLRS +C+L N+++ +L+ L EC +D GGYF
Sbjct: 134 MTR------SGEEPKETKYEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYF 187

Query: 535 IIN 543
           +IN
Sbjct: 188 VIN 190

[35][TOP]
>UniRef100_UPI00006A01AA DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA
           polymerase II subunit B2) (DNA-directed RNA polymerase
           II subunit B) (RNA polymerase II subunit 2)
           (DNA-directed RNA polymerase II 140 kDa polypeptide).
           n=1 Tax=Xenopus (Silurana) tropicalis
           RepID=UPI00006A01AA
          Length = 927

 Score =  166 bits (419), Expect = 1e-39
 Identities = 84/177 (47%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTTGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT V+   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQIQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[36][TOP]
>UniRef100_Q6PA46 MGC68569 protein n=1 Tax=Xenopus laevis RepID=Q6PA46_XENLA
          Length = 949

 Score =  166 bits (419), Expect = 1e-39
 Identities = 84/177 (47%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTTGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT V+   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQIQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[37][TOP]
>UniRef100_B7FVG3 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP
           1055/1 RepID=B7FVG3_PHATR
          Length = 1212

 Score =  166 bits (419), Expect = 1e-39
 Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 16/196 (8%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           ++  ++ EDAW VI+AYF+E GLVRQQL S++EF+  TMQ LVD+S DI + PE Q++ G
Sbjct: 22  DEIPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVG 81

Query: 184 RD------APDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYC 339
            D        ++ TK V  I FGQ+ +SKP   E +G    ++P++ARLRN+TYS PLY 
Sbjct: 82  YDDEAYDREQEKETKFVFEIHFGQVYLSKPTTVEKDGTITNMFPHEARLRNMTYSAPLYV 141

Query: 340 DV------TKTTVRLVDP--ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELN 495
           DV          V + DP  + GE  AT E  +K F+G VP+MLRS FC+L + ++ +L+
Sbjct: 142 DVDLNQYQVGREVNVNDPSEDLGEPVAT-EHAKKEFLGYVPIMLRSLFCVLSDKDDADLS 200

Query: 496 SLGECHVDQGGYFIIN 543
            LGEC  DQGGYF+IN
Sbjct: 201 DLGECVYDQGGYFVIN 216

[38][TOP]
>UniRef100_B7QNH8 DNA-directed RNA polymerase n=1 Tax=Ixodes scapularis
           RepID=B7QNH8_IXOSC
          Length = 1142

 Score =  166 bits (419), Expect = 1e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI+AYFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHASGEI- 78

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +   + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 79  -ENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE   ++  +K FIG++P+MLRS +CLL++L + +L+ L EC +D GGYFIIN
Sbjct: 135 --EGEEPVETQH-QKTFIGKIPIMLRSTYCLLNSLTDRDLSELNECPLDPGGYFIIN 188

[39][TOP]
>UniRef100_B4DHJ3 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4DHJ3_HUMAN
          Length = 1167

 Score =  166 bits (419), Expect = 1e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 13  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 70

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 71  VEEPPRYLLKFEQIYLSKPTHRERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 127

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 128 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 181

[40][TOP]
>UniRef100_Q5KIB7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
           RepID=Q5KIB7_CRYNE
          Length = 1193

 Score =  166 bits (419), Expect = 1e-39
 Identities = 91/190 (47%), Positives = 119/190 (62%), Gaps = 11/190 (5%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  IS ED W VIN++F+E GLVRQQL+S+NEF+  TMQ +VD+   + L    QY    
Sbjct: 46  DEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGV- 104

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
            A DE  +  I FGQ+ +++ N TE +G    L+P +ARLRNLTYS PLY D+ K T+  
Sbjct: 105 -AGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTA 163

Query: 367 --VD--------PETGEE-EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECH 513
             VD        P  G++ E    E EK  IG+VPVM+RS FCLLH L + + + +GEC 
Sbjct: 164 SGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECP 223

Query: 514 VDQGGYFIIN 543
            DQGGYFII+
Sbjct: 224 YDQGGYFIIS 233

[41][TOP]
>UniRef100_Q55U25 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
           RepID=Q55U25_CRYNE
          Length = 1245

 Score =  166 bits (419), Expect = 1e-39
 Identities = 91/190 (47%), Positives = 119/190 (62%), Gaps = 11/190 (5%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  IS ED W VIN++F+E GLVRQQL+S+NEF+  TMQ +VD+   + L    QY    
Sbjct: 45  DEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGV- 103

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
            A DE  +  I FGQ+ +++ N TE +G    L+P +ARLRNLTYS PLY D+ K T+  
Sbjct: 104 -AGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTA 162

Query: 367 --VD--------PETGEE-EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECH 513
             VD        P  G++ E    E EK  IG+VPVM+RS FCLLH L + + + +GEC 
Sbjct: 163 SGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECP 222

Query: 514 VDQGGYFIIN 543
            DQGGYFII+
Sbjct: 223 YDQGGYFIIS 232

[42][TOP]
>UniRef100_UPI0001795E58 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB2
           (RNA polymerase II subunit B2) (DNA-directed RNA
           polymerase II subunit B) (RNA polymerase II subunit 2)
           (DNA-directed RNA polymerase II 140 kDa polypeptide) n=1
           Tax=Equus caballus RepID=UPI0001795E58
          Length = 1174

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[43][TOP]
>UniRef100_UPI000155BCC7 PREDICTED: similar to RNA polymerase II 140 kDa subunit, partial
           n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BCC7
          Length = 951

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[44][TOP]
>UniRef100_UPI0000F2D75F PREDICTED: similar to RNA polymerase II 140 kDa subunit n=1
           Tax=Monodelphis domestica RepID=UPI0000F2D75F
          Length = 1174

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[45][TOP]
>UniRef100_P30876 DNA-directed RNA polymerase II subunit RPB2 n=2 Tax=Catarrhini
           RepID=RPB2_HUMAN
          Length = 1174

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[46][TOP]
>UniRef100_UPI00005A2A5C PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           16 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5C
          Length = 1173

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[47][TOP]
>UniRef100_UPI00005A2A5B PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           15 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5B
          Length = 1179

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[48][TOP]
>UniRef100_UPI00005A2A5A PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           14 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5A
          Length = 1175

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[49][TOP]
>UniRef100_UPI00005A2A59 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           13 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A59
          Length = 1180

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[50][TOP]
>UniRef100_UPI00005A2A58 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           12 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A58
          Length = 1174

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[51][TOP]
>UniRef100_UPI00005A2A57 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           11 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A57
          Length = 1180

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[52][TOP]
>UniRef100_UPI00005A2A56 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           10 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A56
          Length = 1166

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[53][TOP]
>UniRef100_UPI00005A2A55 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           9 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A55
          Length = 1182

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[54][TOP]
>UniRef100_UPI00005A2A54 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           8 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A54
          Length = 1173

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[55][TOP]
>UniRef100_UPI00005A2A53 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           7 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A53
          Length = 1113

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[56][TOP]
>UniRef100_UPI00005A2A52 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           6 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A52
          Length = 1162

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[57][TOP]
>UniRef100_UPI00005A2A51 PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           5 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A51
          Length = 932

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[58][TOP]
>UniRef100_UPI00005A2A4F PREDICTED: similar to polymerase (RNA) II (DNA directed)
           polypeptide B isoform 3 n=1 Tax=Canis lupus familiaris
           RepID=UPI00005A2A4F
          Length = 193

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[59][TOP]
>UniRef100_UPI0000EB23D9 DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA
           polymerase II subunit B2) (DNA-directed RNA polymerase
           II subunit B) (RNA polymerase II subunit 2)
           (DNA-directed RNA polymerase II 140 kDa polypeptide).
           n=1 Tax=Canis lupus familiaris RepID=UPI0000EB23D9
          Length = 1176

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[60][TOP]
>UniRef100_UPI0000F3357E UPI0000F3357E related cluster n=1 Tax=Bos taurus
           RepID=UPI0000F3357E
          Length = 1177

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 21  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 78

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 79  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 135

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 136 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 189

[61][TOP]
>UniRef100_A5PJW8 DNA-directed RNA polymerase n=1 Tax=Bos taurus RepID=A5PJW8_BOVIN
          Length = 1174

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[62][TOP]
>UniRef100_B0WKE9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
           RepID=B0WKE9_CULQU
          Length = 1176

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/173 (47%), Positives = 114/173 (65%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 25  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHTTG--DIETP 82

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
           T+ V+KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT +        
Sbjct: 83  TRYVLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKI------VE 136

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            ++    + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 137 GQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189

[63][TOP]
>UniRef100_A8MW88 DNA-directed RNA polymerase (Fragment) n=1 Tax=Homo sapiens
           RepID=A8MW88_HUMAN
          Length = 1173

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 19  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 76

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 77  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 133

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 134 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 187

[64][TOP]
>UniRef100_Q6RYH8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Filobasidiella
           neoformans RepID=Q6RYH8_CRYNE
          Length = 1114

 Score =  165 bits (418), Expect = 2e-39
 Identities = 90/191 (47%), Positives = 119/191 (62%), Gaps = 11/191 (5%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           +D  IS ED W V N++F+E GLVRQQL+S+NEF+  TMQ +VD+   + L    QY   
Sbjct: 36  DDEPISQEDYWTVTNSFFEEKGLVRQQLESFNEFIETTMQEIVDDHSRLTLDQFTQYTGV 95

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
             A DE  +  I FGQ+ +++ N TE +G    L+P +ARLRNLTYS PLY D+ K T+ 
Sbjct: 96  --AGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLT 153

Query: 364 L--VD--------PETGEE-EATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGEC 510
              VD        P  G++ E    E EK  IG+VPVM+RS FCLLH L + + + +GEC
Sbjct: 154 ASGVDDPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGEC 213

Query: 511 HVDQGGYFIIN 543
             DQGGYFII+
Sbjct: 214 PYDQGGYFIIS 224

[65][TOP]
>UniRef100_Q8CFI7 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Mus musculus
           RepID=RPB2_MOUSE
          Length = 1174

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[66][TOP]
>UniRef100_Q10578 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Caenorhabditis
           elegans RepID=RPB2_CAEEL
          Length = 1193

 Score =  165 bits (418), Expect = 2e-39
 Identities = 84/178 (47%), Positives = 120/178 (67%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           A+   E  W VI+AYFDE GLVRQQL S++EFV + +QR+V++SP + L  E+Q++ G D
Sbjct: 26  AEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHL-GTD 84

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
             +   K  +KF Q+ +SKP   E +G    + PN+ARLRNLTY++PLY D+TK   R  
Sbjct: 85  M-ENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTR-- 141

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                ++ AT +  +KVF+G+VPVMLRS +C+L N+ + +L  L EC +D GGYF+IN
Sbjct: 142 -----DDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVIN 194

[67][TOP]
>UniRef100_Q7QAK7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
           RepID=Q7QAK7_ANOGA
          Length = 1175

 Score =  165 bits (417), Expect = 2e-39
 Identities = 84/173 (48%), Positives = 117/173 (67%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 24  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSSGE--IENP 81

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
           T+ ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT  +LV+    
Sbjct: 82  TRYLLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT--KLVE---- 135

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            ++    + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 136 GQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 188

[68][TOP]
>UniRef100_B3S2W9 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
           RepID=B3S2W9_TRIAD
          Length = 1196

 Score =  165 bits (417), Expect = 2e-39
 Identities = 83/179 (46%), Positives = 116/179 (64%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           + D+  E  W VINAYF+E GLVRQQL S++EF+ +++QR+V++SP I +  E Q+    
Sbjct: 20  ETDLWQEACWVVINAYFNEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDIQGETQHHSSE 79

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           +   ++ +  +KF Q+ +SKP F E +G    +  NQARLRNLTYS PLY D+TKT  + 
Sbjct: 80  E--QQSVRYQLKFDQIYLSKPTFWEKDGSPTPMMSNQARLRNLTYSAPLYVDITKTITK- 136

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                G  E   +   K FIG++P+MLRS +CLLHN+ +  L  L EC +D GGYFIIN
Sbjct: 137 -----GNNEPEVKCHPKTFIGKIPIMLRSTYCLLHNMADHALTELNECPLDVGGYFIIN 190

[69][TOP]
>UniRef100_UPI0000221AC5 hypothetical protein CBG18197 n=1 Tax=Caenorhabditis briggsae AF16
           RepID=UPI0000221AC5
          Length = 1194

 Score =  164 bits (416), Expect = 3e-39
 Identities = 84/177 (47%), Positives = 117/177 (66%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D   E  W VI+AYFDE GLVRQQL S++EFV + +QR+V++SP + L  E+Q++ G D 
Sbjct: 28  DAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHL-GNDM 86

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +   K  +KF Q+ +SKP   E +G    + PN+ARLRNLTY++PLY D+TK   R   
Sbjct: 87  -ENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTR--- 142

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               +E    +  EKVF+G+VPVMLRS +C+L N+ + +L  L EC +D GGYF+IN
Sbjct: 143 ----DESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVIN 195

[70][TOP]
>UniRef100_Q5CY45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium parvum Iowa II
           RepID=Q5CY45_CRYPV
          Length = 1177

 Score =  164 bits (416), Expect = 3e-39
 Identities = 81/178 (45%), Positives = 115/178 (64%), Gaps = 1/178 (0%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I  ED+W +I  YF + GLV QQL+S+N+F+   +Q +VDE P I++ P+ QY P    
Sbjct: 15  EIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYRPDEQI 74

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            D   + V+KFGQL +S+P+  E  G A  L+PN+ARLRNLTYS+P++ D  +   +L D
Sbjct: 75  -DTKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVYKLED 133

Query: 373 PETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              G E    E    ++ + ++P+MLRS +C  HN++E EL S GEC  DQGGYFIIN
Sbjct: 134 --DGSETLVYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIIN 189

[71][TOP]
>UniRef100_Q5CN11 DNA-directed RNA polymerase II second largest chain n=1
           Tax=Cryptosporidium hominis RepID=Q5CN11_CRYHO
          Length = 733

 Score =  164 bits (416), Expect = 3e-39
 Identities = 81/178 (45%), Positives = 115/178 (64%), Gaps = 1/178 (0%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I  ED+W +I  YF + GLV QQL+S+N+F+   +Q +VDE P I++ P+ QY P    
Sbjct: 15  EIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYRPDEQI 74

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            D   + V+KFGQL +S+P+  E  G A  L+PN+ARLRNLTYS+P++ D  +   +L D
Sbjct: 75  -DTKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVYKLED 133

Query: 373 PETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              G E    E    ++ + ++P+MLRS +C  HN++E EL S GEC  DQGGYFIIN
Sbjct: 134 --DGSETLVYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIIN 189

[72][TOP]
>UniRef100_UPI0001B09250 DNA directed RNA polymerase II polypeptide B n=1 Tax=Danio rerio
           RepID=UPI0001B09250
          Length = 1174

 Score =  164 bits (415), Expect = 4e-39
 Identities = 83/177 (46%), Positives = 120/177 (67%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 135 --DGEEQQQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188

[73][TOP]
>UniRef100_UPI000194C2A3 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
           n=1 Tax=Taeniopygia guttata RepID=UPI000194C2A3
          Length = 1174

 Score =  164 bits (415), Expect = 4e-39
 Identities = 82/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GE++  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[74][TOP]
>UniRef100_UPI0001926137 PREDICTED: similar to predicted protein n=1 Tax=Hydra
           magnipapillata RepID=UPI0001926137
          Length = 1426

 Score =  164 bits (415), Expect = 4e-39
 Identities = 84/173 (48%), Positives = 118/173 (68%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VI++YF+E GLVRQQL S++EF+ +++QR+V+ESP I L  E QY    +  +E 
Sbjct: 28  EACWTVISSYFEEKGLVRQQLDSFDEFIQMSVQRIVEESPPIELQAETQYT--ENEIEEP 85

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
           T+  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D++KT  R     +G
Sbjct: 86  TRYQLKFEQIYLSKPTHWEKDGAPKPMMPNEARLRNLTYSAPLYVDISKTITR-----SG 140

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +E  T EE  K++IG++P+MLRS +C+L  L + +L  L EC +D GGYFIIN
Sbjct: 141 QEPET-EEHSKIYIGKIPIMLRSTYCVLSGLVDRDLTELNECPLDPGGYFIIN 192

[75][TOP]
>UniRef100_UPI0000ECC4A8 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1
           Tax=Gallus gallus RepID=UPI0000ECC4A8
          Length = 1176

 Score =  164 bits (415), Expect = 4e-39
 Identities = 82/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 21  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 78

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 79  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 135

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GE++  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 136 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 189

[76][TOP]
>UniRef100_UPI00003AD7E4 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa n=1
           Tax=Gallus gallus RepID=UPI00003AD7E4
          Length = 1174

 Score =  164 bits (415), Expect = 4e-39
 Identities = 82/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GE++  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[77][TOP]
>UniRef100_Q6DRH1 RNA polymerase II subunit B (Fragment) n=1 Tax=Danio rerio
           RepID=Q6DRH1_DANRE
          Length = 562

 Score =  164 bits (415), Expect = 4e-39
 Identities = 83/177 (46%), Positives = 120/177 (67%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 135 --DGEEQQQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188

[78][TOP]
>UniRef100_Q5ZMN9 DNA-directed RNA polymerase n=1 Tax=Gallus gallus
           RepID=Q5ZMN9_CHICK
          Length = 1174

 Score =  164 bits (415), Expect = 4e-39
 Identities = 82/177 (46%), Positives = 121/177 (68%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEARWIVISSYFDEEGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GE++  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 188

[79][TOP]
>UniRef100_Q504C7 Polr2b protein n=1 Tax=Danio rerio RepID=Q504C7_DANRE
          Length = 366

 Score =  164 bits (415), Expect = 4e-39
 Identities = 83/177 (46%), Positives = 120/177 (67%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +E  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE+  ++  +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 135 --DGEEQQQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188

[80][TOP]
>UniRef100_Q02061 DNA-directed RNA polymerase II subunit RPB2 n=1
           Tax=Schizosaccharomyces pombe RepID=RPB2_SCHPO
          Length = 1210

 Score =  164 bits (414), Expect = 5e-39
 Identities = 87/183 (47%), Positives = 118/183 (64%), Gaps = 7/183 (3%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           ++ ED W VI+++F+E  L RQQL S++EFV  TMQ +VD+   + L   DQY     A 
Sbjct: 12  LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTL---DQYAQHTGAQ 68

Query: 196 DENTK-VVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            + T+   I FGQ+ +S+P  TE +G   T++P +ARLRNLTYS+PLY D+ K  +   D
Sbjct: 69  GDVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAAD 128

Query: 373 PET--GEEE----ATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
                GEEE       EEP KVFIG++P+MLRS FC+L+ +++ EL  L EC  DQGGYF
Sbjct: 129 SNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYF 188

Query: 535 IIN 543
           IIN
Sbjct: 189 IIN 191

[81][TOP]
>UniRef100_C0HA74 DNA-directed RNA polymerase n=1 Tax=Salmo salar RepID=C0HA74_SALSA
          Length = 1174

 Score =  162 bits (409), Expect = 2e-38
 Identities = 81/177 (45%), Positives = 120/177 (67%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G   
Sbjct: 20  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE-- 77

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            ++  + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++   
Sbjct: 78  VEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GE++  ++  +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 135 --EGEDQLQTQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 188

[82][TOP]
>UniRef100_Q1L5A7 RNA polymerase II second largest subunit (Fragment) n=1
           Tax=Spinacia oleracea RepID=Q1L5A7_SPIOL
          Length = 495

 Score =  160 bits (406), Expect = 4e-38
 Identities = 83/155 (53%), Positives = 104/155 (67%)
 Frame = +1

Query: 79  QQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFT 258
           QQL S++EF+  TMQ +VDES DI + PE Q+ PG  +    T   IKFGQ+ +SKP  T
Sbjct: 1   QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKIKFGQIYLSKPMMT 60

Query: 259 ENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVP 438
           E++GE  TL+P  ARLRNLTYS PLY DVTK  +R      G+E   + E  KVFIG+VP
Sbjct: 61  ESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIR--KGHDGDELTEAHELPKVFIGKVP 118

Query: 439 VMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +MLRS +C L+  +E +L  LGEC  DQGG FIIN
Sbjct: 119 IMLRSSYCTLYQNSEKDLTELGECPYDQGGCFIIN 153

[83][TOP]
>UniRef100_B4R0H5 DNA-directed RNA polymerase n=1 Tax=Drosophila simulans
           RepID=B4R0H5_DROSI
          Length = 1176

 Score =  160 bits (406), Expect = 4e-38
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 25  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
            +  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT  V  +DP  
Sbjct: 83  PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                   + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189

[84][TOP]
>UniRef100_B4PTC0 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
           RepID=B4PTC0_DROYA
          Length = 1176

 Score =  160 bits (406), Expect = 4e-38
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 25  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
            +  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT  V  +DP  
Sbjct: 83  PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                   + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189

[85][TOP]
>UniRef100_B4N9I3 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
           RepID=B4N9I3_DROWI
          Length = 1176

 Score =  160 bits (406), Expect = 4e-38
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 25  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
            +  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT  V  +DP  
Sbjct: 83  PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                   + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189

[86][TOP]
>UniRef100_B4M040 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
           RepID=B4M040_DROVI
          Length = 1176

 Score =  160 bits (406), Expect = 4e-38
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 25  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
            +  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT  V  +DP  
Sbjct: 83  PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDP-- 140

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                   + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189

[87][TOP]
>UniRef100_B4KDW5 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
           RepID=B4KDW5_DROMO
          Length = 1176

 Score =  160 bits (406), Expect = 4e-38
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 25  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
            +  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT  V  +DP  
Sbjct: 83  PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDP-- 140

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                   + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189

[88][TOP]
>UniRef100_B4K015 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
           RepID=B4K015_DROGR
          Length = 1175

 Score =  160 bits (406), Expect = 4e-38
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 24  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 81

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
            +  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT  V  +DP  
Sbjct: 82  PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 139

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                   + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 140 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 188

[89][TOP]
>UniRef100_Q298X6 DNA-directed RNA polymerase n=2 Tax=pseudoobscura subgroup
           RepID=Q298X6_DROPS
          Length = 1176

 Score =  160 bits (406), Expect = 4e-38
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 25  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
            +  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT  V  +DP  
Sbjct: 83  PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                   + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189

[90][TOP]
>UniRef100_B3P0M0 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
           RepID=B3P0M0_DROER
          Length = 1176

 Score =  160 bits (406), Expect = 4e-38
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 25  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
            +  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT  V  +DP  
Sbjct: 83  PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                   + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189

[91][TOP]
>UniRef100_P08266 DNA-directed RNA polymerase II subunit RPB2 n=2 Tax=melanogaster
           subgroup RepID=RPB2_DROME
          Length = 1176

 Score =  160 bits (406), Expect = 4e-38
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 25  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKT-TVRLVDPET 381
            +  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT  V  +DP  
Sbjct: 83  PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP-- 140

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                   + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 141 -----VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189

[92][TOP]
>UniRef100_UPI000180B7B7 PREDICTED: similar to POLR2B protein n=1 Tax=Ciona intestinalis
           RepID=UPI000180B7B7
          Length = 1173

 Score =  160 bits (405), Expect = 6e-38
 Identities = 81/173 (46%), Positives = 114/173 (65%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VI++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+     +    
Sbjct: 24  EACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPIIELQAESQHTSTEVSVP-- 81

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
           TK ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT V+       
Sbjct: 82  TKYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK------H 135

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           E +    + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 136 EAQPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 188

[93][TOP]
>UniRef100_B6AET6 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
           RepID=B6AET6_9CRYT
          Length = 1184

 Score =  160 bits (405), Expect = 6e-38
 Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 1/180 (0%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D ++  ED+W +I  YF + GLV QQL+S+N+F+   +Q +VDE P IV+IP+ QY P  
Sbjct: 7   DDEVQQEDSWALIGTYFRDRGLVSQQLESFNDFIMYKLQEIVDEHPPIVIIPQPQYRPDE 66

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
              D + + V+KFGQL +S+P+  E  G A  L+P++ARLR+LTY++P++ D  +   R+
Sbjct: 67  QI-DTSIQYVLKFGQLSLSRPSVEEREGVARGLWPSEARLRSLTYASPVFVDAEQKIYRM 125

Query: 367 VDPETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              E G +    E    ++ + ++P+MLRS +C  HN++E EL S GEC  DQGGYFIIN
Sbjct: 126 --HEDGTQTLLHETTYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECIYDQGGYFIIN 183

[94][TOP]
>UniRef100_A5DHT2 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Pichia
           guilliermondii RepID=RPB2_PICGU
          Length = 1236

 Score =  160 bits (405), Expect = 6e-38
 Identities = 85/188 (45%), Positives = 118/188 (62%), Gaps = 8/188 (4%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           + + I+ ED W VI+++F E GLV QQL S++EF+  T+Q LV E   ++L    Q+   
Sbjct: 14  DSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSE 73

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
            D   EN +  I FG++ +SKP  TE +G    ++P +ARLRNLTYS+PLY D+TK  ++
Sbjct: 74  ED--HENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLK 131

Query: 364 LVDP-------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVD 519
             D        E  EEE   EEP  KV++G+VP+MLRS+FC+L +L E E   L EC  D
Sbjct: 132 SDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYD 191

Query: 520 QGGYFIIN 543
            GGYF+IN
Sbjct: 192 MGGYFVIN 199

[95][TOP]
>UniRef100_UPI0000586387 PREDICTED: similar to RNA polymerase II subunit B, partial n=1
           Tax=Strongylocentrotus purpuratus RepID=UPI0000586387
          Length = 300

 Score =  160 bits (404), Expect = 7e-38
 Identities = 81/173 (46%), Positives = 117/173 (67%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP + L  E Q++      +  
Sbjct: 24  EACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAVDLQAEAQHMTTEQ--EVP 81

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
           T+ ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++  D E  
Sbjct: 82  TRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIK--DGEDP 139

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +E       +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 140 QETI----HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 188

[96][TOP]
>UniRef100_A7SHD8 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
           RepID=A7SHD8_NEMVE
          Length = 1182

 Score =  160 bits (404), Expect = 7e-38
 Identities = 81/177 (45%), Positives = 116/177 (65%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP+I L  E Q++     
Sbjct: 24  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPEIDLQAESQHM--TSD 81

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +   + V+KF Q+ +SKP   E +G    + PN+ARLRNLTYS P Y D+TKT ++   
Sbjct: 82  TEIPARFVLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPFYVDITKTRIK--- 138

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                EE       K+FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 139 ---DNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIIN 192

[97][TOP]
>UniRef100_Q753Q4 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Eremothecium
           gossypii RepID=RPB2_ASHGO
          Length = 1222

 Score =  160 bits (404), Expect = 7e-38
 Identities = 84/186 (45%), Positives = 124/186 (66%), Gaps = 7/186 (3%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           DA I+AED+W VI+A+F E GLV QQL S+N+F++ T+Q L+ E   ++L    Q+    
Sbjct: 18  DAPITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTT-- 75

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           +A + + K  I FG++ ++KP+ TE++G +  +YP +ARLRNLTY++ L+ ++ K T   
Sbjct: 76  EADNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEA 135

Query: 367 VDP-------ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
           VD        E  +EE+   E  K+FIGRVP+MLRS++CLL +L+E +L  L EC  D G
Sbjct: 136 VDIPGRDLKYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMG 195

Query: 526 GYFIIN 543
           GYFIIN
Sbjct: 196 GYFIIN 201

[98][TOP]
>UniRef100_Q4YWL7 Putative uncharacterized protein (Fragment) n=1 Tax=Plasmodium
           berghei RepID=Q4YWL7_PLABE
          Length = 467

 Score =  159 bits (403), Expect = 9e-38
 Identities = 78/183 (42%), Positives = 122/183 (66%), Gaps = 3/183 (1%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           +D  I+ ED+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P+I + P+ QY P 
Sbjct: 29  DDDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNIEIKPQPQYRPD 88

Query: 184 RDAPDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
           +   DEN  ++  +KFGQL + +P F E N     L+P +ARLRNLTYS+ +Y D+ ++T
Sbjct: 89  K---DENNNIIYSLKFGQLSLDRPFFDEKNLVNKNLWPQEARLRNLTYSSAIYIDIEQST 145

Query: 358 VRLVDPETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
             ++D  T ++    +   E++ +GR+P+ML+S FC    L E +++ +GEC +DQGGYF
Sbjct: 146 Y-IIDENTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLAENDISDMGECSLDQGGYF 204

Query: 535 IIN 543
           I+N
Sbjct: 205 IVN 207

[99][TOP]
>UniRef100_UPI0001865901 hypothetical protein BRAFLDRAFT_125505 n=1 Tax=Branchiostoma
           floridae RepID=UPI0001865901
          Length = 1176

 Score =  159 bits (402), Expect = 1e-37
 Identities = 82/177 (46%), Positives = 117/177 (66%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q++     
Sbjct: 22  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHLTME-- 79

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +   + ++ F Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT V+   
Sbjct: 80  AEVPPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK--- 136

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE   ++  +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 137 --DGEERIETQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 190

[100][TOP]
>UniRef100_UPI000151B416 hypothetical protein PGUG_02833 n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151B416
          Length = 1291

 Score =  159 bits (402), Expect = 1e-37
 Identities = 85/184 (46%), Positives = 116/184 (63%), Gaps = 8/184 (4%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I+ ED W VI+++F E GLV QQL S++EF+  T+Q LV E   ++L    Q+    D  
Sbjct: 73  ITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEED-- 130

Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
            EN +  I FG++ +SKP  TE +G    ++P +ARLRNLTYS+PLY D+TK  ++  D 
Sbjct: 131 HENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDN 190

Query: 376 -------ETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
                  E  EEE   EEP  KV++G+VP+MLRS+FC+L +L E E   L EC  D GGY
Sbjct: 191 AGNEHELEWIEEEIKDEEPLTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGY 250

Query: 532 FIIN 543
           F+IN
Sbjct: 251 FVIN 254

[101][TOP]
>UniRef100_C5LHP3 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
           RepID=C5LHP3_9ALVE
          Length = 993

 Score =  159 bits (402), Expect = 1e-37
 Identities = 84/184 (45%), Positives = 123/184 (66%), Gaps = 7/184 (3%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I  +D+W V +AYF + GLV QQ+ S+++FV+  MQ +VDE P I +IP++Q   G ++
Sbjct: 108 EIVQDDSWAVADAYFKDKGLVSQQVGSFDDFVTYKMQEIVDECPPITIIPQNQV--GWES 165

Query: 193 PDE----NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
                  ++  +++FGQL ++KP   E +G   +L PNQARLRNLTYS+P+Y +VT+TT 
Sbjct: 166 EGARVYMDSSFLVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTY 225

Query: 361 RLVDPE--TGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
            L DP+    E++  SE+   K+ IGR+P+ML+S +C L N  E  L  +GEC  DQGGY
Sbjct: 226 ALADPDDPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGY 285

Query: 532 FIIN 543
           FIIN
Sbjct: 286 FIIN 289

[102][TOP]
>UniRef100_C3Y5U9 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
           RepID=C3Y5U9_BRAFL
          Length = 1104

 Score =  159 bits (402), Expect = 1e-37
 Identities = 82/177 (46%), Positives = 117/177 (66%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q++     
Sbjct: 22  DLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHLTME-- 79

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +   + ++ F Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT V+   
Sbjct: 80  AEVPPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK--- 136

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              GEE   ++  +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 137 --DGEERIETQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 190

[103][TOP]
>UniRef100_B3LYR3 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
           RepID=B3LYR3_DROAN
          Length = 1176

 Score =  159 bits (402), Expect = 1e-37
 Identities = 81/173 (46%), Positives = 111/173 (64%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E  W VINAYFDE GLVRQQL S++EF+ +++QR+V++SP I L  E Q+  G    +  
Sbjct: 25  EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE--VETP 82

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
            +  +KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT          
Sbjct: 83  PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT------KNVE 136

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            ++    + +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 137 GQDPIETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIIN 189

[104][TOP]
>UniRef100_A3GFG5 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
           RepID=A3GFG5_PICST
          Length = 1232

 Score =  159 bits (402), Expect = 1e-37
 Identities = 85/184 (46%), Positives = 116/184 (63%), Gaps = 8/184 (4%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I+ ED W VI+++F E GLV QQL S++EF+  T+Q LV E   ++L    Q+    D  
Sbjct: 18  ITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDD-- 75

Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
            EN +  I FG++ +SKP  TE +G    ++P +ARLRNLTYS+PLY D+TK   +  D 
Sbjct: 76  HENRRYEITFGKIYISKPMQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVFKSDDN 135

Query: 376 -------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
                  E  EE+   EEP+ KVF+G+VP+MLRS+FC+L +L E E   L EC  D GGY
Sbjct: 136 RRKENELEWVEEKVEDEEPQQKVFLGKVPIMLRSKFCMLRDLGEHEFFELKECPYDMGGY 195

Query: 532 FIIN 543
           F+IN
Sbjct: 196 FVIN 199

[105][TOP]
>UniRef100_Q6CAD6 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
           RepID=Q6CAD6_YARLI
          Length = 1229

 Score =  159 bits (401), Expect = 2e-37
 Identities = 83/188 (44%), Positives = 117/188 (62%), Gaps = 9/188 (4%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D +I+AED W VI+++F+E GLV QQL S++EF+  T+Q LV E   ++L    Q+    
Sbjct: 13  DTEITAEDCWTVISSFFNEKGLVSQQLDSFDEFIETTIQELVWEDRTLILDQPAQHTTPN 72

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           D  ++N +  I FG++ +S+P  TE +G    +YP +AR RNLTYS+PLY D+ K  +  
Sbjct: 73  D--NQNKRFEITFGKIYLSRPTMTEADGSTHPMYPQEARARNLTYSSPLYVDMKKRVLFS 130

Query: 367 VDPETGEEE--------ATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVD 519
           +D     E            EEP  KV+IG+VP+MLRS+FC+L  L E +L  L EC  D
Sbjct: 131 IDDPARPEADVVWNPIPGEVEEPVSKVYIGKVPIMLRSKFCILRGLRENDLYELNECPYD 190

Query: 520 QGGYFIIN 543
           QGGYF+IN
Sbjct: 191 QGGYFVIN 198

[106][TOP]
>UniRef100_Q4Y5W4 DNA-directed RNA polymerase II second largest subunit, putative
           (Fragment) n=1 Tax=Plasmodium chabaudi
           RepID=Q4Y5W4_PLACH
          Length = 727

 Score =  158 bits (399), Expect = 3e-37
 Identities = 80/184 (43%), Positives = 123/184 (66%), Gaps = 4/184 (2%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           +D  I+ ED+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P I + P+ QY P 
Sbjct: 27  DDDQINEEDSWVVIGSFFG-HGLVNQQIESYNDFIEYRMQEIIDEHPHIEIKPQPQYRPD 85

Query: 184 RDAPDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
           +D   ENT ++  +KFGQL + +P F E N     L+P +ARLRNLTYS+ +Y D+ ++T
Sbjct: 86  KD---ENTNIIYSLKFGQLSLDRPFFDEKNLVNKNLWPQEARLRNLTYSSAIYIDIEQST 142

Query: 358 VRLVDPETGEEEATSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
             +   ET +++   E+   E++ +GR+P+ML+S FC    L E +++ +GEC +DQGGY
Sbjct: 143 YMI--DETTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLPENDISDMGECSLDQGGY 200

Query: 532 FIIN 543
           FI+N
Sbjct: 201 FIVN 204

[107][TOP]
>UniRef100_Q6CWA5 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
           RepID=Q6CWA5_KLULA
          Length = 1221

 Score =  157 bits (398), Expect = 4e-37
 Identities = 83/187 (44%), Positives = 122/187 (65%), Gaps = 8/187 (4%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           +A ISAED+W VI+A+F E GLV QQL S+N+F++ T+Q L+ E   ++L    Q+    
Sbjct: 16  EAAISAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTET 75

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           D  + + K  I FG++ ++KP+ TE++G +  +YP +ARLRNLTY++ L+ ++ K T + 
Sbjct: 76  D--NISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQA 133

Query: 367 VDPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522
           +D            EE   +EE  K+FIGRVP+MLRS++CLL +L E +L  L EC  D 
Sbjct: 134 IDIPGRDLKYEIITEESEENEENNKIFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDM 193

Query: 523 GGYFIIN 543
           GGYFIIN
Sbjct: 194 GGYFIIN 200

[108][TOP]
>UniRef100_Q5A8Y5 DNA-directed RNA polymerase n=2 Tax=Candida albicans
           RepID=Q5A8Y5_CANAL
          Length = 1234

 Score =  157 bits (398), Expect = 4e-37
 Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 7/186 (3%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  I+ ED W VI ++F E GLV QQL S++EFV  ++Q LV E   ++L    Q+   +
Sbjct: 17  DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEK 76

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           D   EN +  I FG++ +SKP+ TE +G    ++P +ARLRNLTYS+PLY D+T    + 
Sbjct: 77  D--HENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKS 134

Query: 367 VDPETGEEEAT--SEEPEK-----VFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
            D +  + E     EEP+K     VF+G+VP+MLRS+FC+L +L E E   L EC  D G
Sbjct: 135 DDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMG 194

Query: 526 GYFIIN 543
           GYF+IN
Sbjct: 195 GYFVIN 200

[109][TOP]
>UniRef100_B9W6V2 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
           RepID=B9W6V2_CANDC
          Length = 1234

 Score =  157 bits (398), Expect = 4e-37
 Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 7/186 (3%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  I+ ED W VI ++F E GLV QQL S++EFV  ++Q LV E   ++L    Q+   +
Sbjct: 17  DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEK 76

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           D   EN +  I FG++ +SKP+ TE +G    ++P +ARLRNLTYS+PLY D+T    + 
Sbjct: 77  D--HENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKS 134

Query: 367 VDPETGEEEAT--SEEPEK-----VFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
            D +  + E     EEP+K     VF+G+VP+MLRS+FC+L +L E E   L EC  D G
Sbjct: 135 DDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMG 194

Query: 526 GYFIIN 543
           GYF+IN
Sbjct: 195 GYFVIN 200

[110][TOP]
>UniRef100_Q7RQI2 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii
           RepID=Q7RQI2_PLAYO
          Length = 1312

 Score =  157 bits (396), Expect = 6e-37
 Identities = 77/183 (42%), Positives = 122/183 (66%), Gaps = 3/183 (1%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           ++  I+ ED+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P+I + P+ QY P 
Sbjct: 29  DEDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNIEIKPQPQYRPD 88

Query: 184 RDAPDENTKVV--IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
           +   DEN  ++  +KFGQL + +P F E N     L+P +ARLRNLTYS+ +Y D+ ++T
Sbjct: 89  K---DENNNIIYSLKFGQLSLDRPFFDEKNLINKNLWPQEARLRNLTYSSAIYIDIEQST 145

Query: 358 VRLVDPETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
             +VD  T ++    +   E++ +GR+P+ML+S FC    L + +++ +GEC +DQGGYF
Sbjct: 146 Y-IVDENTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLPDNDISDMGECSLDQGGYF 204

Query: 535 IIN 543
           I+N
Sbjct: 205 IVN 207

[111][TOP]
>UniRef100_Q27826 DNA-directed RNA polymerase n=1 Tax=Euplotes octocarinatus
           RepID=Q27826_EUPOC
          Length = 1194

 Score =  157 bits (396), Expect = 6e-37
 Identities = 88/182 (48%), Positives = 119/182 (65%), Gaps = 3/182 (1%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG- 183
           D +I+ EDAW VI AYFD+HGLV QQ+ S++ F+S T+Q +V E+  I + PE Q+ PG 
Sbjct: 29  DDEITQEDAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDIVTENNTISIQPELQFAPGS 88

Query: 184 RDAPDENTKVVIKFGQLRVS-KPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
            +   EN K  I  GQ+RV+ KP F E + +   ++PN+ARLRNLTY T LY +V K   
Sbjct: 89  MNESRENIKYDIILGQVRVNEKPRFKEFDDKYNVIFPNEARLRNLTYQTSLYVEVKKQD- 147

Query: 361 RLVDPETGEEEATSEEPEK-VFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFI 537
             V  + G E    E+ EK V++G+VPVM+RS FC L+ ++E E   + EC  DQGGYFI
Sbjct: 148 -KVVEQDGSEVIIDEQTEKEVYMGKVPVMVRSGFCSLNGIDESERWEMKECFHDQGGYFI 206

Query: 538 IN 543
           IN
Sbjct: 207 IN 208

[112][TOP]
>UniRef100_C5DLS0 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS
           6340 RepID=C5DLS0_LACTC
          Length = 1220

 Score =  157 bits (396), Expect = 6e-37
 Identities = 81/187 (43%), Positives = 122/187 (65%), Gaps = 7/187 (3%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           ++A I+AED+W VI+A+F E GLV QQL S+N+F++ T+Q  + E   ++L    Q+   
Sbjct: 17  DEASITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDSIVEDSTLILEQLAQHTT- 75

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
            +A + + K  I FG++ ++KP+ TE++G +  +YP +ARLRNLTY++ L+ ++ K T  
Sbjct: 76  -EADNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIRKRTYE 134

Query: 364 LVDP-------ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522
            VD        E  +EE+   +  K+FIGRVP+MLRS++CLL  L E +L  L EC  D 
Sbjct: 135 AVDIPGRDLKYEVIDEESEMSDESKIFIGRVPIMLRSKYCLLDELTESDLYKLKECPFDM 194

Query: 523 GGYFIIN 543
           GGYFIIN
Sbjct: 195 GGYFIIN 201

[113][TOP]
>UniRef100_UPI000186D6F3 DNA-directed RNA polymerase II 135 kDa polypeptide, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186D6F3
          Length = 1175

 Score =  156 bits (394), Expect = 1e-36
 Identities = 80/178 (44%), Positives = 117/178 (65%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           +++  E  W VIN+YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G  
Sbjct: 19  SELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPIIDLQAEAQHASGE- 77

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
             +     ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TK  ++  
Sbjct: 78  -IENPPHYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKKIIK-- 134

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               GE+   ++  +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 135 ---EGEDPIETKH-QKSFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 188

[114][TOP]
>UniRef100_B6KB61 DNA-directed RNA polymerase n=3 Tax=Toxoplasma gondii
           RepID=B6KB61_TOXGO
          Length = 1259

 Score =  155 bits (391), Expect = 2e-36
 Identities = 78/177 (44%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           +  +  W V++++F  HGLV QQL+S+N+FVS  +Q ++DE P I + P  QY P  +  
Sbjct: 86  VDQDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPTPQYRPEEEV- 144

Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
           + N    +K  QL +++P+  E  G +  L+P +AR RNLTYS+PLY DV +TT   VDP
Sbjct: 145 ESNVIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSSPLYVDVEQTTYT-VDP 203

Query: 376 ETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           ETG E    +    +V +GR+P+ML+S +C   +L E +L  +GEC  DQGGYFIIN
Sbjct: 204 ETGAERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFIIN 260

[115][TOP]
>UniRef100_A8XS50 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae
           RepID=A8XS50_CAEBR
          Length = 1215

 Score =  155 bits (391), Expect = 2e-36
 Identities = 84/192 (43%), Positives = 117/192 (60%), Gaps = 15/192 (7%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDE---------------HGLVRQQLQSYNEFVSVTMQRLVDESPD 147
           D   E  W VI+AYFDE                GLVRQQL S++EFV + +QR+V++SP 
Sbjct: 34  DAWQEACWVVISAYFDEKVNFGFFLIKTICMFQGLVRQQLDSFDEFVQMNVQRIVEDSPP 93

Query: 148 IVLIPEDQYVPGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYST 327
           + L  E+Q++ G D  +   K  +KF Q+ +SKP   E +G    + PN+ARLRNLTY++
Sbjct: 94  VELQSENQHL-GNDM-ENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYAS 151

Query: 328 PLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGE 507
           PLY D+TK   R       +E    +  EKVF+G+VPVMLRS +C+L N+ + +L  L E
Sbjct: 152 PLYVDITKVVTR-------DESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNE 204

Query: 508 CHVDQGGYFIIN 543
           C +D GGYF+IN
Sbjct: 205 CPLDPGGYFVIN 216

[116][TOP]
>UniRef100_A5KBW7 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
           RepID=A5KBW7_PLAVI
          Length = 1339

 Score =  154 bits (390), Expect = 3e-36
 Identities = 77/177 (43%), Positives = 114/177 (64%), Gaps = 1/177 (0%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I+ ED+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P I + P+ QY   RD  
Sbjct: 31  ITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPQIEIRPQPQYRSDRD-D 89

Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
           ++N    +KFGQL + +P + E N     L+P +ARLRNLTYS+ +Y D+ ++T  +VD 
Sbjct: 90  NKNVMYALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTY-VVDE 148

Query: 376 ETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            T  +    +   E++ +GR+P+ML+S FC    L E E+  +GEC  DQGGYFI+N
Sbjct: 149 STRSQILKEKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVN 205

[117][TOP]
>UniRef100_B5RV50 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
           RepID=B5RV50_DEBHA
          Length = 1232

 Score =  154 bits (390), Expect = 3e-36
 Identities = 82/184 (44%), Positives = 115/184 (62%), Gaps = 8/184 (4%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I+ E+ W VI+++F E GLV QQL S++EF+  T+Q LV E   ++L    Q+    D  
Sbjct: 20  ITPENCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDD-- 77

Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
            EN +  I FG++ +SKP  TE +G    ++P +ARLRNLTYS+PLY D+TK  ++  D 
Sbjct: 78  HENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVLKSDDN 137

Query: 376 -------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
                  E  EE+   E P+ KV++G+VP+MLRS+FC+L  L E E   L EC  D GGY
Sbjct: 138 NRVDNELEWVEEKIEDEGPQTKVYLGKVPIMLRSKFCMLRGLGEHEFYELKECPYDMGGY 197

Query: 532 FIIN 543
           F+IN
Sbjct: 198 FVIN 201

[118][TOP]
>UniRef100_UPI00017B4CC9 UPI00017B4CC9 related cluster n=1 Tax=Tetraodon nigroviridis
           RepID=UPI00017B4CC9
          Length = 1147

 Score =  154 bits (389), Expect = 4e-36
 Identities = 77/166 (46%), Positives = 114/166 (68%)
 Frame = +1

Query: 46  NAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKF 225
           ++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G    +E  + ++KF
Sbjct: 4   SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE--VEEPPRYLLKF 61

Query: 226 GQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSE 405
            Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++      GE++  ++
Sbjct: 62  EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK-----EGEDQIQTQ 116

Query: 406 EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
             +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 117 H-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 161

[119][TOP]
>UniRef100_Q4T1Y4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon
           nigroviridis RepID=Q4T1Y4_TETNG
          Length = 1217

 Score =  154 bits (389), Expect = 4e-36
 Identities = 77/166 (46%), Positives = 114/166 (68%)
 Frame = +1

Query: 46  NAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKF 225
           ++YFDE GLVRQQL S++EF+ +++QR+V+++P I L  E Q+  G    +E  + ++KF
Sbjct: 4   SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGE--VEEPPRYLLKF 61

Query: 226 GQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSE 405
            Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++      GE++  ++
Sbjct: 62  EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK-----EGEDQIQTQ 116

Query: 406 EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
             +K FIG++P+MLRS +CLL  L + +L  L EC +D GGYFIIN
Sbjct: 117 H-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIIN 161

[120][TOP]
>UniRef100_Q6FLD5 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Candida
           glabrata RepID=RPB2_CANGA
          Length = 1223

 Score =  153 bits (387), Expect = 7e-36
 Identities = 85/187 (45%), Positives = 113/187 (60%), Gaps = 8/187 (4%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           +A I+AED W VI+A+F E GLV QQL S+N+FV  T+Q ++ E   ++L    Q+   +
Sbjct: 20  NAPITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEQ 79

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           D  + + K  I FG++ V+KP   E++G    LYP +ARLRNLTYS+ L+ DVTK T   
Sbjct: 80  D--NISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYEA 137

Query: 367 VDPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522
           VD            EE     E  KVFIGR+P+MLRS+ C L +  E +L  L EC  D 
Sbjct: 138 VDVPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDM 197

Query: 523 GGYFIIN 543
           GGYFIIN
Sbjct: 198 GGYFIIN 204

[121][TOP]
>UniRef100_P90631 RNA polymerase II second largest subunit (Fragment) n=1
           Tax=Moneuplotes crassus RepID=P90631_EUPCR
          Length = 205

 Score =  153 bits (386), Expect = 9e-36
 Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 11/191 (5%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP- 180
           N  +I+ EDAW +I AYF +HGLV QQ+ S++ F+S T+Q +V E+  + ++PE QY P 
Sbjct: 5   NSKEITQEDAWALIKAYFQQHGLVSQQISSFDRFLSYTIQDIVAENSIMSIVPEKQYAPG 64

Query: 181 -------GRDAPDENTKVVIKFGQLRVS-KPNFTENNGEAGTLYPNQARLRNLTYSTPLY 336
                  G +  D + +  I+ GQ++V+ KP F E + +   ++PN+ARLRNLTY T +Y
Sbjct: 65  VRLYLTLGNENQDRDLRYEIELGQVKVNEKPRFKEYDDKYNVIFPNEARLRNLTYQTSVY 124

Query: 337 CDVTKTTVRLVDPETGEEEATSEEPEK-VFIGRVPVMLRSRFCLLHNL-NEFELNSLGEC 510
            +VTK     V    G EE   +  EK V+IG+VPVM++S FC L+ + NE+E+    EC
Sbjct: 125 VEVTKRD--KVTNSKGVEEVLEKRKEKEVYIGKVPVMIKSAFCSLNRIENEYEMK---EC 179

Query: 511 HVDQGGYFIIN 543
             DQGGYFIIN
Sbjct: 180 FFDQGGYFIIN 190

[122][TOP]
>UniRef100_O96236 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
           RepID=O96236_PLAF7
          Length = 1340

 Score =  153 bits (386), Expect = 9e-36
 Identities = 79/183 (43%), Positives = 118/183 (64%), Gaps = 2/183 (1%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           PN+  I+ +D+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P I + P+ QY  
Sbjct: 27  PNE-QITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRT 85

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
            RD  D N    +KFGQL + +P + E N     L+P +ARLRNLTYS+ +Y D+ ++T 
Sbjct: 86  DRDEND-NIIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTY 144

Query: 361 RLVDPETGEEEATSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYF 534
            ++D E  ++    E+   E++ +GR+P+ML+S FC    L E E+  +GEC  DQGGYF
Sbjct: 145 -IID-EVTKKPVLKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYF 202

Query: 535 IIN 543
           I+N
Sbjct: 203 IVN 205

[123][TOP]
>UniRef100_C4Y646 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
           42720 RepID=C4Y646_CLAL4
          Length = 369

 Score =  153 bits (386), Expect = 9e-36
 Identities = 85/190 (44%), Positives = 116/190 (61%), Gaps = 14/190 (7%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVL------IPEDQYV 177
           I+ ED W VI+++F E GLV QQL S++EF+  T+Q LV E   ++L        EDQY 
Sbjct: 21  ITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQHTSEDQY- 79

Query: 178 PGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
                  EN +  I FG++ +SKP  TE +G    ++P +ARLRNLTYS+PLY D+TK  
Sbjct: 80  -------ENKRFEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKK 132

Query: 358 VRLVDP-------ETGEEEATSEEPE-KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECH 513
               D        E  EE+  +E+ + KVF+G+VP+MLRS+FC+L +L E E   L EC 
Sbjct: 133 FTSDDRIRKGNELEWIEEKVDNEDAQSKVFLGKVPIMLRSKFCMLRDLGEHEFYELKECP 192

Query: 514 VDQGGYFIIN 543
            D GGYF+IN
Sbjct: 193 YDMGGYFVIN 202

[124][TOP]
>UniRef100_C4QZQ7 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
           RepID=C4QZQ7_PICPG
          Length = 1227

 Score =  153 bits (386), Expect = 9e-36
 Identities = 82/192 (42%), Positives = 118/192 (61%), Gaps = 13/192 (6%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  I+ ED W VI+A+F+E GLV QQL S++EF+  ++Q LV E P ++L    Q+   +
Sbjct: 9   DDTITTEDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHTNEK 68

Query: 187 DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
           D  + N +  I+FG++ +S+P  TE +G    ++P +ARLRNLTYS+P+Y D+ K+    
Sbjct: 69  D--NINKRYEIRFGKIYLSRPTMTEADGTTHAMFPQEARLRNLTYSSPVYLDMEKSMFTS 126

Query: 367 VDPETGEEEATS-------------EEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGE 507
           +D E G   AT              EE  KV IG+VP+MLRS+FC L  L+E +L  + E
Sbjct: 127 IDDE-GNPNATLDWQQVHEPIKDGVEEGNKVHIGKVPIMLRSKFCSLRTLDEVDLYKMKE 185

Query: 508 CHVDQGGYFIIN 543
           C  D GGYF+IN
Sbjct: 186 CPYDMGGYFVIN 197

[125][TOP]
>UniRef100_A5DVP4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
           RepID=A5DVP4_LODEL
          Length = 1238

 Score =  152 bits (385), Expect = 1e-35
 Identities = 82/192 (42%), Positives = 117/192 (60%), Gaps = 13/192 (6%)
 Frame = +1

Query: 7   DADISA-----EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQ 171
           DAD+ A     ED W VI+++F E GLV QQL S++EF+  T+Q LV E   ++L    Q
Sbjct: 14  DADVEAQNITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQ 73

Query: 172 YVPGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351
           +   +D   +N +  I FG++ +SKP  TE +G    ++P +ARLRNLTYS+P+Y D+TK
Sbjct: 74  HTSEKD--HDNKRYEINFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPIYVDMTK 131

Query: 352 TTV-----RLVDPETGEEEATSE---EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGE 507
                   + +D E    E   E   +  KV++G+VP+MLRS+FC+L +L E E   L E
Sbjct: 132 RVFTSDDNKRIDNELEWHEIDVEGEKKTSKVYLGKVPIMLRSKFCMLRDLGEHEFYELKE 191

Query: 508 CHVDQGGYFIIN 543
           C  D GGYF+IN
Sbjct: 192 CPYDMGGYFVIN 203

[126][TOP]
>UniRef100_A8PVJ8 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
           RepID=A8PVJ8_MALGO
          Length = 1197

 Score =  152 bits (383), Expect = 2e-35
 Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 10/187 (5%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +IS ED W+VI A+F+E GLVRQQ+ S+NEF+S T+Q LV+ES  + L   DQ+     A
Sbjct: 9   EISQEDCWDVIKAFFEEKGLVRQQIDSFNEFMSNTVQELVEESKSLTLEQSDQHT--GQA 66

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT-KTTVRLV 369
            D+  +  I+FGQ+ ++KP  TE +G    L+P +AR RNLTYS  L+ DV+ K  V+  
Sbjct: 67  EDKTRRYEIEFGQIYMNKPQQTEADGSTAPLFPQEARQRNLTYSAGLHVDVSQKVLVKGE 126

Query: 370 DPETGEE-------EATSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQ 522
           + E  E        + T EE   EKV++G+VP+ML S FC L +L +    SL EC  D 
Sbjct: 127 EDELDENGDQLWIPDPTQEEIVDEKVYLGKVPIMLHSHFCWLTDLPDEGKYSLNECPFDS 186

Query: 523 GGYFIIN 543
           GGYFIIN
Sbjct: 187 GGYFIIN 193

[127][TOP]
>UniRef100_Q98RY5 DNA-directed RNA polymerase n=1 Tax=Guillardia theta
           RepID=Q98RY5_GUITH
          Length = 1206

 Score =  151 bits (382), Expect = 3e-35
 Identities = 72/180 (40%), Positives = 116/180 (64%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           N+++   +  W ++  +F + GLV QQ+ S+N F+  TMQ ++D+ P I +  ++   PG
Sbjct: 2   NNSNFDIDILWHILKLFFIQKGLVDQQINSFNNFIQNTMQDIIDDMPPITVYIDND--PG 59

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
            D      ++VI+ GQL +SKP + E++G    L PN+ARLRNLTYS+PLYC+++ +   
Sbjct: 60  NDDLLSKIRMVIRLGQLHLSKPTYIEDDGLVHNLVPNEARLRNLTYSSPLYCEISTS--- 116

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           ++  E   +    +  EK+ IGR+P+M++S+FC+L NL+   L +LGEC  D GGYFI+N
Sbjct: 117 IIKNEKSIDYILKQFSEKILIGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIVN 176

[128][TOP]
>UniRef100_C5MEG3 DNA-directed RNA polymerase n=1 Tax=Candida tropicalis MYA-3404
           RepID=C5MEG3_CANTT
          Length = 1240

 Score =  151 bits (382), Expect = 3e-35
 Identities = 81/185 (43%), Positives = 115/185 (62%), Gaps = 9/185 (4%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I+ ED W VI+++F E GLV QQL S++EFV  ++Q LV E   ++L    Q+    D  
Sbjct: 20  ITQEDCWTVISSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSVAD-- 77

Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
            +N +  I+FG++ +SK + TE +G   +++P +ARLRNLTYS+PLY D+TK      D 
Sbjct: 78  HKNKRYEIEFGKIYISKTSQTEGDGTTHSVFPQEARLRNLTYSSPLYVDMTKRKFESDDN 137

Query: 376 ETGEEEATSEEPE---------KVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528
           +  + E   EE E         KVF+G+VP+MLRS+FC+L+ L E E   L EC  D GG
Sbjct: 138 KRKDNELEWEEIEVDDKEGPQSKVFLGKVPIMLRSKFCMLNGLAEHEFYELKECPYDMGG 197

Query: 529 YFIIN 543
           YF+IN
Sbjct: 198 YFVIN 202

[129][TOP]
>UniRef100_B3L0J5 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
           RepID=B3L0J5_PLAKH
          Length = 1371

 Score =  150 bits (380), Expect = 4e-35
 Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I+ ED+W VI ++F  HGLV QQ++SYN+F+   MQ ++DE P + + P+ QY    D  
Sbjct: 72  ITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPALEIRPQAQYRSEGD-E 130

Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
            +N    +KFGQL + +P + E N     L+P +ARLRNLTYS+ +Y D+ ++T  +VD 
Sbjct: 131 QKNVMYALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTY-VVDE 189

Query: 376 ETGEEEATSE-EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            +G +    +   E++ +GR+P+ML+S FC    L E E+  +GEC  DQGGYFI+N
Sbjct: 190 SSGSQILKDKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVN 246

[130][TOP]
>UniRef100_A6S7C1 DNA-directed RNA polymerase n=2 Tax=Botryotinia fuckeliana
           RepID=A6S7C1_BOTFB
          Length = 1207

 Score =  150 bits (380), Expect = 4e-35
 Identities = 90/212 (42%), Positives = 122/212 (57%), Gaps = 33/212 (15%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP-- 180
           DA I+AED W VI+++F+  GLV QQL S++EFV  TMQ LV+E+  + L   DQ  P  
Sbjct: 17  DAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTL---DQNNPPS 73

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT- 357
             D P    +  IKFG + +S+P  TE +G    + P +ARLRNLTYS+PLY ++TK+T 
Sbjct: 74  SHDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQ 133

Query: 358 ---------------------------VRLV-DPETGEEEAT--SEEPEKVFIGRVPVML 447
                                       RLV + E G+ E    +  PE+V+IG++P+ML
Sbjct: 134 VAVERPVPLNELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLPMML 193

Query: 448 RSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +S FC+L  L+E EL    EC  DQGGYFIIN
Sbjct: 194 KSEFCILKGLDEDELYGWNECPYDQGGYFIIN 225

[131][TOP]
>UniRef100_C5JQR0 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis
           SLH14081 RepID=C5JQR0_AJEDS
          Length = 1258

 Score =  149 bits (377), Expect = 1e-34
 Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   + L  +    P  
Sbjct: 17  DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSE 74

Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           D  D     +  +KFG + +++P+ TE +G    + P +ARLRNLTY++PLY  +TK   
Sbjct: 75  DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134

Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456
               RL+    D E GEE+   E                    E E VFIGR+P+ML+S+
Sbjct: 135 EGRERLIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSK 194

Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +C+L +LNE  L +  EC  D GGYFIIN
Sbjct: 195 YCILKDLNEQSLYNWNECPYDSGGYFIIN 223

[132][TOP]
>UniRef100_C5GBN2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3
           RepID=C5GBN2_AJEDR
          Length = 1258

 Score =  149 bits (377), Expect = 1e-34
 Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   + L  +    P  
Sbjct: 17  DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSE 74

Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           D  D     +  +KFG + +++P+ TE +G    + P +ARLRNLTY++PLY  +TK   
Sbjct: 75  DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134

Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456
               RL+    D E GEE+   E                    E E VFIGR+P+ML+S+
Sbjct: 135 EGRERLIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSK 194

Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +C+L +LNE  L +  EC  D GGYFIIN
Sbjct: 195 YCILKDLNEQSLYNWNECPYDSGGYFIIN 223

[133][TOP]
>UniRef100_A7TTM7 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM
           70294 RepID=A7TTM7_VANPO
          Length = 1223

 Score =  149 bits (377), Expect = 1e-34
 Identities = 82/186 (44%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           A I+AED+W VI+++F E GLV QQL S+N+FV  T+Q ++ E   ++L    Q+    D
Sbjct: 20  APITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESD 79

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
             + + K  I FG++ V+KP   E++G    LYP ++RLRNLTYS+ L+ DV K T   V
Sbjct: 80  --NISRKYEISFGKIYVTKPMVNESDGVTHALYPQESRLRNLTYSSGLFVDVNKRTYEAV 137

Query: 370 DPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
           D            EE     E +KVFIGR+P+MLRS+ C L +  E +L  L EC  D G
Sbjct: 138 DVPGRDLNYQLIAEESEEDNENDKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMG 197

Query: 526 GYFIIN 543
           GYFIIN
Sbjct: 198 GYFIIN 203

[134][TOP]
>UniRef100_A6R483 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
            RepID=A6R483_AJECN
          Length = 1743

 Score =  149 bits (377), Expect = 1e-34
 Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%)
 Frame = +1

Query: 7    DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
            D  I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   + L  +    P  
Sbjct: 502  DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPAE 559

Query: 187  DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
            D  D     +  +KFG + +++P+ TE +G    + P +ARLRNLTY++PLY  +TK   
Sbjct: 560  DKIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 619

Query: 361  ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456
                RL+    D E GEE+   E                    E E VFIGR+P+ML+S+
Sbjct: 620  EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 679

Query: 457  FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            +C+L +LNE  L +  EC  D GGYFIIN
Sbjct: 680  YCILKDLNEQSLYNWNECPYDSGGYFIIN 708

[135][TOP]
>UniRef100_C0NB61 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
           RepID=C0NB61_AJECG
          Length = 1307

 Score =  149 bits (376), Expect = 1e-34
 Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 30/209 (14%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   + L  +    P  
Sbjct: 119 DEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPAE 176

Query: 187 DAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           D  D     +  +KFG + +++P+ TE +G    + P +ARLRNLTY++PLY  +TK   
Sbjct: 177 DEIDPVVLRRYELKFGTVMLARPSVTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 236

Query: 361 ----RLV----DPETGEEEATSE--------------------EPEKVFIGRVPVMLRSR 456
               RL+    D E GEE+   E                    E E VFIGR+P+ML+S+
Sbjct: 237 EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 296

Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +C+L +LNE  L +  EC  D GGYFIIN
Sbjct: 297 YCILKDLNEQSLYNWNECPYDSGGYFIIN 325

[136][TOP]
>UniRef100_A7E6G0 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980
           UF-70 RepID=A7E6G0_SCLS1
          Length = 1267

 Score =  149 bits (375), Expect = 2e-34
 Identities = 84/212 (39%), Positives = 117/212 (55%), Gaps = 33/212 (15%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP-- 180
           DA I+AED W VI+++FD  GLV QQ+ S++EFV  TMQ LV+E+  + L   DQ  P  
Sbjct: 17  DAGITAEDCWTVISSFFDAKGLVSQQIDSFDEFVQTTMQELVEENSQLTL---DQNNPPS 73

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
             D P    +  IKFG + +S+P  TE +G    + P +ARLRNLTYS+PLY ++TK+T 
Sbjct: 74  SNDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQ 133

Query: 361 RLVDPETGEEEATSEE-------------------------------PEKVFIGRVPVML 447
             V+      E   E+                               PE+V++G++P+ML
Sbjct: 134 VAVERPVPLNELDDEQEADLANGGEHPTRLVWEYEDGDPDGAKGGPAPERVYVGKLPMML 193

Query: 448 RSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +S +C L N +E +L    EC  DQGGYFIIN
Sbjct: 194 KSEYCFLKNCDEDDLYGWNECPYDQGGYFIIN 225

[137][TOP]
>UniRef100_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4 Tax=Saccharomyces
           cerevisiae RepID=RPB2_YEAST
          Length = 1224

 Score =  148 bits (374), Expect = 2e-34
 Identities = 83/186 (44%), Positives = 110/186 (59%), Gaps = 8/186 (4%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           A I+AED+W VI+A+F E GLV QQL S+N+FV  T+Q ++ E   ++L    Q+    D
Sbjct: 23  APITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESD 82

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
             + + K  I FG++ V+KP   E++G    LYP +ARLRNLTYS+ L+ DV K T   +
Sbjct: 83  --NISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAI 140

Query: 370 DPE--------TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQG 525
           D            EE     E  KVFIGR+P+MLRS+ C L    E +L  L EC  D G
Sbjct: 141 DVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG 200

Query: 526 GYFIIN 543
           GYFIIN
Sbjct: 201 GYFIIN 206

[138][TOP]
>UniRef100_C5DW43 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS
           732 RepID=C5DW43_ZYGRC
          Length = 1224

 Score =  147 bits (372), Expect = 4e-34
 Identities = 82/184 (44%), Positives = 110/184 (59%), Gaps = 8/184 (4%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I+AED+W VI+A+F E GLV QQL S+N+FV  T+Q ++ E   ++L    Q+    D  
Sbjct: 25  ITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESD-- 82

Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD- 372
           + + K  I FG++ V+KP   E++G    LYP +ARLRNLTYS+ L+ DV K T   VD 
Sbjct: 83  NISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTHEAVDI 142

Query: 373 -------PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
                      EE     +  KVFIGR+P+MLRS+ C L +  E +L  L EC  D GGY
Sbjct: 143 PGRELKYEMIAEESENDSDSGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGY 202

Query: 532 FIIN 543
           FIIN
Sbjct: 203 FIIN 206

[139][TOP]
>UniRef100_C4Q1D7 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
           RepID=C4Q1D7_SCHMA
          Length = 1304

 Score =  147 bits (370), Expect = 6e-34
 Identities = 80/178 (44%), Positives = 114/178 (64%), Gaps = 1/178 (0%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           D+  E  W VI++YFDE GLVRQQL S++EF+  ++Q++V++SP I L  E Q+  G   
Sbjct: 146 DMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGG--I 203

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
            +   +  +KF Q+ +SK    E +G +  + PN ARLRNLTY+ PLY DV K  +R   
Sbjct: 204 LETPVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIR--- 260

Query: 373 PETGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                +E   E+P EK FIG++P+MLRS +CLL  +++ +L  L EC +D GGYFIIN
Sbjct: 261 -----DEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIIN 313

[140][TOP]
>UniRef100_A7ATA0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis
           RepID=A7ATA0_BABBO
          Length = 1207

 Score =  146 bits (369), Expect = 8e-34
 Identities = 73/174 (41%), Positives = 114/174 (65%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           ED+W+VI ++F+ HGLV QQ++S+N+FV+  MQ  +D+ P I + P+ QY P  D  + N
Sbjct: 59  EDSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETIDQHPPIEITPQPQYHP-EDERENN 117

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDV-TKTTVRLVDPET 381
               +KFGQL ++KP   E  G    ++P +ARLRNLTYS+ +Y D+  KT +R  +  T
Sbjct: 118 IVYKLKFGQLSLNKPCVEEMAGVLKHIWPQEARLRNLTYSSQIYVDIEQKTYLRDENTNT 177

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              + T   P ++ +GR+P+ML+S +C   +++E +L  +GEC  D+GGYFI+N
Sbjct: 178 ETLQETITYP-RIELGRIPMMLKSAYCWTKDISEDDLADVGECPFDEGGYFIVN 230

[141][TOP]
>UniRef100_Q4U9X1 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
           RepID=Q4U9X1_THEAN
          Length = 1223

 Score =  145 bits (367), Expect = 1e-33
 Identities = 71/181 (39%), Positives = 118/181 (65%), Gaps = 1/181 (0%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           +D + + ED W+VI ++F+EHGLV QQ++S+N+F++  MQ ++D  P I + P+  Y P 
Sbjct: 52  DDENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPPIEITPQPNYRPE 111

Query: 184 RDAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
            +   EN+ V  +KFGQL +SKP+  E +G    ++P +ARLRNLTY++ +Y D+ + T 
Sbjct: 112 EEV--ENSVVYKLKFGQLSLSKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQETY 169

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
              D +  + ++T     +V + R+P+M +S +C    LN+ +L+ +GEC  DQGGYF++
Sbjct: 170 INEDGKLTQTDSTVY--PRVPLCRMPMMHKSSYCWTRGLNDQDLSDIGECVFDQGGYFVV 227

Query: 541 N 543
           N
Sbjct: 228 N 228

[142][TOP]
>UniRef100_C5FJF0 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
           RepID=C5FJF0_NANOT
          Length = 1258

 Score =  145 bits (367), Expect = 1e-33
 Identities = 83/210 (39%), Positives = 119/210 (56%), Gaps = 34/210 (16%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI+A+F+  GLV QQL S++EF+S TMQ LV+E   + L   DQ VP  D  
Sbjct: 19  ITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL---DQTVPPGD-- 73

Query: 196 DENTKVV-----IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           DE   VV     +KFG + +++P+ TE +G    + P +ARLRNLTY++PLY  ++K  +
Sbjct: 74  DEQDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIM 133

Query: 361 ----RLVDPETGEEEATSE-------------------------EPEKVFIGRVPVMLRS 453
               RL+     EEE   E                         E E +FIG++P+ML+S
Sbjct: 134 EGRERLLSERDDEEEEVEEKGDEERRSRGTYLHWERKPTLEDEAEEENIFIGKMPIMLKS 193

Query: 454 RFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           ++C+L +L E  L +  EC  D GGYF+IN
Sbjct: 194 KYCILKDLGEQALYNWNECPYDSGGYFVIN 223

[143][TOP]
>UniRef100_B6HM08 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum
           Wisconsin 54-1255 RepID=B6HM08_PENCW
          Length = 1255

 Score =  145 bits (366), Expect = 2e-33
 Identities = 85/209 (40%), Positives = 123/209 (58%), Gaps = 30/209 (14%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   +VL   DQ +P  
Sbjct: 17  DEGITSEDCWTVISSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVL---DQTLPPS 73

Query: 187 DAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351
           +  DE   +V+     KFG + +S+P+ TE +G    + P +ARLRNLTY++PLY  VTK
Sbjct: 74  E--DEIEPIVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTK 131

Query: 352 TTV-------RLVDPETGEEEA------------TSEEP------EKVFIGRVPVMLRSR 456
             +       +  D +  E E+            T + P      E VFIG++P+ML+S+
Sbjct: 132 KIMEGREKIGKPTDDDDNEGESDPKTQGTYLEWETKQLPQEQMKEETVFIGKMPIMLKSK 191

Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +C+L +LNE  L +  EC  D GGYF+IN
Sbjct: 192 YCILKDLNESSLYAWNECPYDSGGYFVIN 220

[144][TOP]
>UniRef100_A2QYC2 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
           RepID=A2QYC2_ASPNC
          Length = 1256

 Score =  144 bits (363), Expect = 4e-33
 Identities = 86/210 (40%), Positives = 122/210 (58%), Gaps = 31/210 (14%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   + L   DQ +P  
Sbjct: 17  DEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLP-- 71

Query: 187 DAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351
            + DE   VV+     KFG + +S+P+ TE +G    + P +ARLRNLTY++PLY  VTK
Sbjct: 72  PSEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTK 131

Query: 352 TTV----RLVDPETGEEEATSEEPEK----------------------VFIGRVPVMLRS 453
             +    RLV     ++ A S E +K                      VFIG++P+ML+S
Sbjct: 132 KIMEGRERLVADRDDDDMAESTEDKKAHGTYLQWEQKELPADQAKEETVFIGKMPIMLKS 191

Query: 454 RFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           ++C+L +L+E  L +  EC  D GGYFIIN
Sbjct: 192 KYCILKDLSEQALYNWNECPYDSGGYFIIN 221

[145][TOP]
>UniRef100_A1D971 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
           RepID=A1D971_NEOFI
          Length = 1255

 Score =  142 bits (359), Expect = 1e-32
 Identities = 85/208 (40%), Positives = 122/208 (58%), Gaps = 32/208 (15%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   + L   DQ +P  D  
Sbjct: 20  ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLPPSD-- 74

Query: 196 DENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           DE+  VV+     KFG + +S+P+ TE +G    + P +ARLRNLTY++PLY  +TK  +
Sbjct: 75  DEDDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134

Query: 361 ----RL--------VDPETGEEE---------------ATSEEPEKVFIGRVPVMLRSRF 459
               RL        V P+  E+                A   + E VFIG++P+ML+S++
Sbjct: 135 EGRERLIADRDEDDVAPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKY 194

Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543
           C+L +L+E  L +  EC  D GGYFIIN
Sbjct: 195 CILKDLSEQALYNWNECPYDSGGYFIIN 222

[146][TOP]
>UniRef100_Q8SR75 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Encephalitozoon
           cuniculi RepID=RPB2_ENCCU
          Length = 1141

 Score =  142 bits (359), Expect = 1e-32
 Identities = 74/180 (41%), Positives = 120/180 (66%), Gaps = 1/180 (0%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           ++  + E +W +I+++F++ GLVRQQL S+++FV   MQ +++ESP I++    Q  P  
Sbjct: 2   ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIV----QSAPTA 57

Query: 187 DAPDENTKVVIKFGQLRVSKPN-FTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
               +  ++ ++FGQ+ VSKP  +TE++G   T++PN+AR+R+LTY++PL+ DVTK T+ 
Sbjct: 58  GIETQK-RIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLS 116

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               E G  +    +  +V  G +PVMLRS +C+L+ L + +L  LGEC  DQGGYFI+N
Sbjct: 117 ----ELGVVD--KHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVN 170

[147][TOP]
>UniRef100_C1H7W3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
           Pb01 RepID=C1H7W3_PARBA
          Length = 1258

 Score =  142 bits (358), Expect = 2e-32
 Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 30/206 (14%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   + L  +    P  D  
Sbjct: 20  ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSEDEV 77

Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV--- 360
           D     +  +KFG + +++P+ TE +G    + P +ARLRNLTY++PLY  +TK      
Sbjct: 78  DPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGR 137

Query: 361 -RLV--------DPETGEEEATSE----------------EPEKVFIGRVPVMLRSRFCL 465
            RL+        D +  +E+  +                 E E VFIGR+P+ML+S++C+
Sbjct: 138 ERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCI 197

Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543
           L +LNE  L +  EC  D GGYFIIN
Sbjct: 198 LKDLNEQALYNWNECPYDSGGYFIIN 223

[148][TOP]
>UniRef100_C0S0L5 DNA-directed RNA polymerase n=2 Tax=Paracoccidioides brasiliensis
           RepID=C0S0L5_PARBP
          Length = 1258

 Score =  142 bits (358), Expect = 2e-32
 Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 30/206 (14%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   + L  +    P  D  
Sbjct: 20  ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTLAPSEDEV 77

Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV--- 360
           D     +  +KFG + +++P+ TE +G    + P +ARLRNLTY++PLY  +TK      
Sbjct: 78  DPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGR 137

Query: 361 -RLV--------DPETGEEEATSE----------------EPEKVFIGRVPVMLRSRFCL 465
            RL+        D +  +E+  +                 E E VFIGR+P+ML+S++C+
Sbjct: 138 ERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCI 197

Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543
           L +LNE  L +  EC  D GGYFIIN
Sbjct: 198 LKDLNEQALYNWNECPYDSGGYFIIN 223

[149][TOP]
>UniRef100_Q0CWW4 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
           RepID=Q0CWW4_ASPTN
          Length = 1256

 Score =  142 bits (357), Expect = 2e-32
 Identities = 86/210 (40%), Positives = 125/210 (59%), Gaps = 31/210 (14%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   + L   DQ +P  
Sbjct: 17  DEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLPPN 73

Query: 187 DAPDENTKVV-----IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351
           +  DE   +V     +KFG + +S+P+ TE +G    + P +ARLRNLTY++PLY  +TK
Sbjct: 74  E--DEVDPIVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITK 131

Query: 352 TTV----RLV----DPETGE--EEATSE----------------EPEKVFIGRVPVMLRS 453
             +    RLV    + E GE  E+  S+                + E VFIG++P+ML+S
Sbjct: 132 RIMEGRERLVADRNEEEMGEPVEDRKSQGTYLQWEQKELPPDQAKEETVFIGKMPIMLKS 191

Query: 454 RFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           ++C+L +L+E  L +  EC  D GGYFIIN
Sbjct: 192 KYCILKDLSEQALYNWNECPYDSGGYFIIN 221

[150][TOP]
>UniRef100_C5PAW2 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735
           delta SOWgp RepID=C5PAW2_COCP7
          Length = 1258

 Score =  142 bits (357), Expect = 2e-32
 Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 31/207 (14%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   + L  +    P  D P
Sbjct: 20  ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTIAPDEDDP 77

Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
           D     +  +KFG + +++P+ TE +G    + P +ARLRNLTY++PLY  +TK      
Sbjct: 78  DPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEGR 137

Query: 370 DPETGEEEATSEEP-----------------------------EKVFIGRVPVMLRSRFC 462
           +    E +   +EP                             E +FIG++P+ML+S++C
Sbjct: 138 ERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYC 197

Query: 463 LLHNLNEFELNSLGECHVDQGGYFIIN 543
           +L +L E  L +  EC  D GGYFIIN
Sbjct: 198 ILKDLGEHALYNWNECPYDSGGYFIIN 224

[151][TOP]
>UniRef100_Q4N2K9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
           RepID=Q4N2K9_THEPA
          Length = 1190

 Score =  141 bits (356), Expect = 3e-32
 Identities = 69/180 (38%), Positives = 116/180 (64%), Gaps = 1/180 (0%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D + + ED W+VI ++F+EHGLV QQ++S+N+F++  MQ ++D  P I + P+  Y P  
Sbjct: 53  DENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDAHPPIEITPQPNYRP-- 110

Query: 187 DAPDENTKVV-IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
           +  +EN+ +  +KFGQL ++KP+  E +G    ++P +ARLRNLTY++ +Y D+ + T  
Sbjct: 111 EEEEENSILYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQET-- 168

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            V+      +  S    +V + R+P+M +S +C    LN+ +L+ +GEC  DQGGYF++N
Sbjct: 169 FVNENGKLVQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDRDLSDIGECVFDQGGYFVVN 228

[152][TOP]
>UniRef100_B8NK59 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=B8NK59_ASPFN
          Length = 1254

 Score =  141 bits (356), Expect = 3e-32
 Identities = 86/206 (41%), Positives = 121/206 (58%), Gaps = 30/206 (14%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   + L   DQ +P  +  
Sbjct: 20  ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLPPDE-- 74

Query: 196 DENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           DE   VV+     KFG + +S+P+ TE +G    + P +ARLRNLTY++PLY  +TK  +
Sbjct: 75  DEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134

Query: 361 ----RLV----DPETGEEE-----------------ATSEEPEKVFIGRVPVMLRSRFCL 465
               R V    D E  E+E                 A   + E VFIG+VP+ML+S++C+
Sbjct: 135 EGRERSVADRDDEEIEEDEDRKARGTYLQWEQKELPADQAKEETVFIGKVPIMLKSKYCI 194

Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543
           L +L+E  L +  EC  D GGYFIIN
Sbjct: 195 LKDLSEQALYNWNECPYDSGGYFIIN 220

[153][TOP]
>UniRef100_A1CG49 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
           RepID=A1CG49_ASPCL
          Length = 1257

 Score =  141 bits (356), Expect = 3e-32
 Identities = 84/208 (40%), Positives = 119/208 (57%), Gaps = 32/208 (15%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI+++FD  GLV QQL S++EFVS TMQ LV+E   + L   DQ +P  D  
Sbjct: 20  ITSEDCWTVISSFFDTKGLVSQQLDSFDEFVSSTMQELVEEQGQVTL---DQTLPPAD-- 74

Query: 196 DENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           DE   VV+     KFG + +S+P+ TE +G    + P +ARLRNLTY++PLY  +TK  +
Sbjct: 75  DEVDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134

Query: 361 R-----LVDPETGEEEATSEEPEK----------------------VFIGRVPVMLRSRF 459
                 + D E  E    ++E  K                      VFIG++P+ML+S++
Sbjct: 135 EGRERLIADREDDETVPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKY 194

Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543
           C+L +L+E  L +  EC  D GGYFIIN
Sbjct: 195 CILKDLSEQALYNWNECPYDSGGYFIIN 222

[154][TOP]
>UniRef100_C4JKI6 DNA-directed RNA polymerase II 138 kDa polypeptide n=1
           Tax=Uncinocarpus reesii 1704 RepID=C4JKI6_UNCRE
          Length = 884

 Score =  140 bits (353), Expect = 6e-32
 Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 30/206 (14%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI+++F+  GLV QQL S++EF+S TMQ LV+E   + L  +    P  D P
Sbjct: 20  ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL--DQTIAPEEDDP 77

Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
           D     +  +KFG + +++P+ TE +G    + P +ARLRNLTY++PLY  +TK      
Sbjct: 78  DPVLVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKVAEGR 137

Query: 370 D------------PETGEEEATS----------------EEPEKVFIGRVPVMLRSRFCL 465
           +             E G+EE  +                E  E +FIG++P+ML+S++C+
Sbjct: 138 ERSLAERDEDEEPEEKGDEERRARGTYLQWAPRALPEDEEGEENIFIGKMPIMLKSKYCI 197

Query: 466 LHNLNEFELNSLGECHVDQGGYFIIN 543
           L +L E  L +  EC  D GGYFIIN
Sbjct: 198 LKDLGEHALYNWNECPYDSGGYFIIN 223

[155][TOP]
>UniRef100_B0YC08 DNA-directed RNA polymerase n=3 Tax=Aspergillus fumigatus
           RepID=B0YC08_ASPFC
          Length = 1255

 Score =  139 bits (350), Expect = 1e-31
 Identities = 82/208 (39%), Positives = 121/208 (58%), Gaps = 32/208 (15%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI+++FD  GLV QQL S++EF+S TMQ LV+E   + L   DQ +P   + 
Sbjct: 20  ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLP--PSE 74

Query: 196 DENTKVV-----IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           DE+  VV     +KFG + +S+P+ TE +G    + P +ARLRNLTY++PLY  +TK  +
Sbjct: 75  DEDDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIM 134

Query: 361 ----RLV--------DPETGEEEAT---------------SEEPEKVFIGRVPVMLRSRF 459
               RL+         P+  E+                    + E VFIG++P+ML+S++
Sbjct: 135 EGRERLIADRDEDDAAPDADEDRKARGTYLQWEQKELPPDQAKEETVFIGKMPIMLKSKY 194

Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543
           C+L +L+E  L +  EC  D GGYFIIN
Sbjct: 195 CILKDLSEQALYNWNECPYDSGGYFIIN 222

[156][TOP]
>UniRef100_Q2VA54 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
           RepID=Q2VA54_PHANO
          Length = 1262

 Score =  139 bits (349), Expect = 2e-31
 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P  D+
Sbjct: 19  EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
            P    +  IKFG++ +++P  TE +G    L+P++ARLRNLTYS  +  D++      K
Sbjct: 79  DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
            T  +V+ E  + E T+                  EE  +VFIG++PVMLRS  C L N 
Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 478 NEFELNSLGECHVDQGGYFIIN 543
           ++  L +  EC  DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220

[157][TOP]
>UniRef100_Q1HDJ9 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
           triticae RepID=Q1HDJ9_9PLEO
          Length = 1262

 Score =  139 bits (349), Expect = 2e-31
 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P  D+
Sbjct: 19  EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
            P    +  IKFG++ +++P  TE +G    L+P++ARLRNLTYS  +  D++      K
Sbjct: 79  DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
            T  +V+ E  + E T+                  EE  +VFIG++PVMLRS  C L N 
Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 478 NEFELNSLGECHVDQGGYFIIN 543
           ++  L +  EC  DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220

[158][TOP]
>UniRef100_Q1HDJ8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
           RepID=Q1HDJ8_PHANO
          Length = 1262

 Score =  139 bits (349), Expect = 2e-31
 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P  D+
Sbjct: 19  EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
            P    +  IKFG++ +++P  TE +G    L+P++ARLRNLTYS  +  D++      K
Sbjct: 79  DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
            T  +V+ E  + E T+                  EE  +VFIG++PVMLRS  C L N 
Sbjct: 139 ETQVVVEGEDEDMEVTTTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 478 NEFELNSLGECHVDQGGYFIIN 543
           ++  L +  EC  DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220

[159][TOP]
>UniRef100_Q0U9V8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0U9V8_PHANO
          Length = 1252

 Score =  139 bits (349), Expect = 2e-31
 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 25/202 (12%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P  D+
Sbjct: 19  EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
            P    +  IKFG++ +++P  TE +G    L+P++ARLRNLTYS  +  D++      K
Sbjct: 79  DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
            T  +V+ E  + E T+                  EE  +VFIG++PVMLRS  C L N 
Sbjct: 139 ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 478 NEFELNSLGECHVDQGGYFIIN 543
           ++  L +  EC  DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220

[160][TOP]
>UniRef100_B6QUV1 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC
           18224 RepID=B6QUV1_PENMQ
          Length = 1254

 Score =  139 bits (349), Expect = 2e-31
 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 26/202 (12%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI++YFD  GLV QQL S++EF+S TMQ LV+E   + +  +    P  D  
Sbjct: 20  ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTI--DQTITPNEDEI 77

Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV--- 360
           D     +  IK+G + +++P+F+E NG A  L P +AR RNLTY++PLY +V +      
Sbjct: 78  DPVVIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGR 137

Query: 361 --RLVDPETGEEE-------------------ATSEEPEKVFIGRVPVMLRSRFCLLHNL 477
             + VD E   +E                    + EE +  +IGR+P+ML+S++CLL +L
Sbjct: 138 ERKAVDREGEGDENEEQKPGGTYLDWEEKPLVVSEEEAKGCYIGRIPIMLKSKYCLLRDL 197

Query: 478 NEFELNSLGECHVDQGGYFIIN 543
           +E  L +  EC  D GGYFIIN
Sbjct: 198 SEQSLYNWNECPYDSGGYFIIN 219

[161][TOP]
>UniRef100_A9UUX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
           RepID=A9UUX4_MONBE
          Length = 1166

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/183 (42%), Positives = 110/183 (60%), Gaps = 3/183 (1%)
 Frame = +1

Query: 4   NDADISAED--AWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYV 177
           +DADI   D   WEVINAYF E GLVRQQL S++ F++ T+Q+++  SP I +    QY+
Sbjct: 2   DDADIDNWDEACWEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKNSPPIEVQGRLQYL 61

Query: 178 PGRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
              +  +E  K  I FGQ   + P   E +G    ++PN  RLRNLTY + + C++T  T
Sbjct: 62  --SNEIEEPPKHTISFGQAGFALPQHKEEDGNYDHVFPNDCRLRNLTYQSLMQCEITH-T 118

Query: 358 VRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEF-ELNSLGECHVDQGGYF 534
           V   +PETGE   T        +G+VP+MLRS++C L+ +  F +   + EC +D GGYF
Sbjct: 119 VEQKNPETGEVTTT-----PALLGKVPMMLRSKYCTLNKMETFRDFYDINECPLDPGGYF 173

Query: 535 IIN 543
           IIN
Sbjct: 174 IIN 176

[162][TOP]
>UniRef100_B8MU25 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC
           10500 RepID=B8MU25_TALSN
          Length = 1256

 Score =  137 bits (346), Expect = 4e-31
 Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 28/204 (13%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I++ED W VI++YFD  GLV QQL S++EF+S TMQ LV+E   + +  +    P  D  
Sbjct: 20  ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTI--DQTITPNEDEI 77

Query: 196 DENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDV----TKTT 357
           D     +  IK+G + +++P+F+E NG A  L P +AR RNLTY++PLY +V    T+  
Sbjct: 78  DPVVIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGR 137

Query: 358 VRLVDPETGE------------------EEA----TSEEPEKVFIGRVPVMLRSRFCLLH 471
            R V    GE                  EE     + EE +  +IGR+P+ML+S++CLL 
Sbjct: 138 ERKVADRDGEGLGDENEEQKPGGTYLEWEEKPLVISEEEAKGCYIGRIPIMLKSKYCLLR 197

Query: 472 NLNEFELNSLGECHVDQGGYFIIN 543
           +L+E  L +  EC  D GGYFIIN
Sbjct: 198 DLSEQSLYNWNECPYDSGGYFIIN 221

[163][TOP]
>UniRef100_Q872W7 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
           RepID=Q872W7_NEUCR
          Length = 1287

 Score =  137 bits (345), Expect = 5e-31
 Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 42/218 (19%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           I+ ED+WEVI++YFD  GLV QQ+ S+NEF + T+Q L+DE  D+ L   D   PG    
Sbjct: 43  ITPEDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTL---DHPSPG---D 96

Query: 196 DENTKVVIK-----FGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT- 357
           DE  +++++     FG++ +S+P  TE  GE  +L P + R RNLTYS P+YC VTK   
Sbjct: 97  DEGREIILRRYDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRAR 156

Query: 358 ---------VRLVDPE------TG---------EEEATSEEPEK------------VFIG 429
                     +L D E      TG         EEE+   EP K            +F+G
Sbjct: 157 IAVSEKKPLNQLTDDEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLG 216

Query: 430 RVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           ++P+M++S+ C L+  ++  L +L EC  DQGGYFIIN
Sbjct: 217 KIPIMVKSKICHLYMEDDESLFTLNECPYDQGGYFIIN 254

[164][TOP]
>UniRef100_Q1HDK3 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria sp. S-93-48
           RepID=Q1HDK3_9PLEO
          Length = 1262

 Score =  137 bits (345), Expect = 5e-31
 Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P  D+
Sbjct: 19  EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
            P    +  IKFG++ +++P  TE +G    L+P++ARLRNLTYS  +  D++      K
Sbjct: 79  DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
            T  + + E  + E T+                  EE  +VFIG++PVMLRS  C L N 
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 478 NEFELNSLGECHVDQGGYFIIN 543
           ++  L +  EC  DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220

[165][TOP]
>UniRef100_Q1HDK2 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
           triticae RepID=Q1HDK2_9PLEO
          Length = 1262

 Score =  137 bits (345), Expect = 5e-31
 Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P  D+
Sbjct: 19  EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
            P    +  IKFG++ +++P  TE +G    L+P++ARLRNLTYS  +  D++      K
Sbjct: 79  DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
            T  + + E  + E T+                  EE  +VFIG++PVMLRS  C L N 
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 478 NEFELNSLGECHVDQGGYFIIN 543
           ++  L +  EC  DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220

[166][TOP]
>UniRef100_Q1HDI7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
           avenaria RepID=Q1HDI7_9PLEO
          Length = 1262

 Score =  137 bits (345), Expect = 5e-31
 Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P  D+
Sbjct: 19  EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
            P    +  IKFG++ +++P  TE +G    L+P++ARLRNLTYS  +  D++      K
Sbjct: 79  DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
            T  + + E  + E T+                  EE  +VFIG++PVMLRS  C L N 
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 478 NEFELNSLGECHVDQGGYFIIN 543
           ++  L +  EC  DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220

[167][TOP]
>UniRef100_Q1HDI5 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
           avenaria RepID=Q1HDI5_9PLEO
          Length = 1262

 Score =  137 bits (345), Expect = 5e-31
 Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 25/202 (12%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P  D+
Sbjct: 19  EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVT------K 351
            P    +  IKFG++ +++P  TE +G    L+P++ARLRNLTYS  +  D++      K
Sbjct: 79  DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
            T  + + E  + E T+                  EE  +VFIG++PVMLRS  C L N 
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 478 NEFELNSLGECHVDQGGYFIIN 543
           ++  L +  EC  DQGGYF+IN
Sbjct: 199 SDEALFAFNECPYDQGGYFVIN 220

[168][TOP]
>UniRef100_B2ADP9 DNA-directed RNA polymerase n=2 Tax=Podospora anserina
           RepID=B2ADP9_PODAN
          Length = 1278

 Score =  137 bits (345), Expect = 5e-31
 Identities = 87/216 (40%), Positives = 120/216 (55%), Gaps = 36/216 (16%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           ++A I+ ED W+VI+AYFD  GLV QQ+ S++EF S T+Q LVDE  D+ L   D   PG
Sbjct: 35  DEAAITPEDCWDVISAYFDMKGLVSQQIDSFDEFTSSTIQSLVDEYADLTL---DHPNPG 91

Query: 184 RDAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK-T 354
            D   +    +  I FG + +SKP  TE +GE  +L P + R RNLTYS P+YC V+K  
Sbjct: 92  DDQGRDIALRRYDIHFGNVMISKPTLTEISGETTSLLPYECRDRNLTYSAPMYCKVSKRA 151

Query: 355 TVRLVDP---------------ETGE-------EEATSEEP-----------EKVFIGRV 435
            V + +P               ETGE       EE  S+ P           + +F+G++
Sbjct: 152 RVAINEPVPLNELDDEQHELMRETGEHPMTIRWEEEESDMPGEGSKGENDRGDLIFLGKL 211

Query: 436 PVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           PVM++S+ C L+  ++  L  L EC  DQGGYFIIN
Sbjct: 212 PVMVKSQICHLYGEDDESLFVLNECPYDQGGYFIIN 247

[169][TOP]
>UniRef100_Q1HDK1 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria avenaria f. sp.
           triticae RepID=Q1HDK1_9PLEO
          Length = 1262

 Score =  135 bits (341), Expect = 1e-30
 Identities = 78/202 (38%), Positives = 113/202 (55%), Gaps = 25/202 (12%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           +I++ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P  D+
Sbjct: 19  EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 193 -PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCD------VTK 351
            P    +  IKFG++ +++P  TE +G    L+P++ARLRNLTYS  +  D      V K
Sbjct: 79  DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 352 TTVRLVDPETGEEEATS------------------EEPEKVFIGRVPVMLRSRFCLLHNL 477
            T  + + E  + E T+                  +E  +VFIG++PVMLRS  C L N 
Sbjct: 139 ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDDEAARVFIGKLPVMLRSELCHLRNQ 198

Query: 478 NEFELNSLGECHVDQGGYFIIN 543
            +  L +  EC  DQGGYF+IN
Sbjct: 199 TDEALFAFNECPYDQGGYFVIN 220

[170][TOP]
>UniRef100_C8VK81 DNA-directed RNA polymerase (EC 2.7.7.6)
           [Source:UniProtKB/TrEMBL;Acc:Q9UV95] n=2 Tax=Emericella
           nidulans RepID=C8VK81_EMENI
          Length = 1252

 Score =  135 bits (339), Expect = 3e-30
 Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 29/208 (13%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  I++ED W VI+++FD  GLV QQL S++EF+S T+Q LV+E   + L   DQ +P  
Sbjct: 17  DEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTL---DQTIP-- 71

Query: 187 DAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTK 351
            + DE   VV+     KFG + +S+P   E +G A  + P++ARLRN+TY++PLY  + K
Sbjct: 72  PSEDEVDPVVVRRYELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLGIKK 131

Query: 352 TTV----RLV----DPETGEEEATS----------------EEPEKVFIGRVPVMLRSRF 459
             +    R+V    D + G E+  +                 + E V IG++P+ML+S++
Sbjct: 132 KIMEGRERMVGDRDDDDMGNEDRKATGTYLQWEEMALPPDQAKEETVHIGKMPIMLKSKY 191

Query: 460 CLLHNLNEFELNSLGECHVDQGGYFIIN 543
           CLL +L E  L    EC  D GGYFIIN
Sbjct: 192 CLLRDLGEQALYDWNECPYDSGGYFIIN 219

[171][TOP]
>UniRef100_A4QV56 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
           RepID=A4QV56_MAGGR
          Length = 1276

 Score =  134 bits (338), Expect = 3e-30
 Identities = 81/215 (37%), Positives = 110/215 (51%), Gaps = 35/215 (16%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           ND +I+AED W VI++YFDE GLV QQ+ SYNEF + T+Q +VDE   + L   +     
Sbjct: 22  NDDEITAEDCWNVISSYFDEKGLVSQQIDSYNEFTTSTIQGIVDEYSVLTLDNPNPPDTF 81

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV- 360
              P    +  I  G + V++P   E +G+  TL P + R RNLTYS PLY  +TK    
Sbjct: 82  EGKPIRLRRYEIMLGNILVTQPTVKETDGKVSTLVPYECRDRNLTYSCPLYVKLTKKVNV 141

Query: 361 ---------RLVDPETGEEEATSEEP-------------------------EKVFIGRVP 438
                     L D +  E + T+E P                         + ++IG++P
Sbjct: 142 AVEEDIPLHELNDEQREEMQRTNEHPTTIRWELDRDKSHNPDEKISGEKMADMIYIGKIP 201

Query: 439 VMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           VM++SR C L +  E EL  L EC  DQGGYFIIN
Sbjct: 202 VMVKSRICYLRSQPESELFLLNECPYDQGGYFIIN 236

[172][TOP]
>UniRef100_C9SGY6 DNA-directed RNA polymerase II subunit RPB2 n=1 Tax=Verticillium
           albo-atrum VaMs.102 RepID=C9SGY6_9PEZI
          Length = 1260

 Score =  134 bits (337), Expect = 4e-30
 Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 37/217 (17%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           +DA I+ ED W VI+++FD  GLV QQ+ S++EF + T+Q L+DE   I L   DQ  P 
Sbjct: 17  DDASITPEDCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITL---DQPNPA 73

Query: 184 RDAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTT 357
            D+       +  +KFG + VS+P+ TE +G+  TL P + R RNLTY++PLY  +TK  
Sbjct: 74  SDSDRAIALRRYEVKFGTVMVSRPSITEADGKVSTLLPYECRDRNLTYASPLYVRITKKV 133

Query: 358 VRLVDPE----------------TG--------EEEATSEEP-----------EKVFIGR 432
              V+ +                TG        EEE + ++P           + +FIGR
Sbjct: 134 SIAVENQIPLNELDDEQHDEMGRTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFIGR 193

Query: 433 VPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +P+M++S+ C L   +E +L  L EC  DQGGYF+IN
Sbjct: 194 MPIMVKSKICHLSRESENDLFMLNECPYDQGGYFVIN 230

[173][TOP]
>UniRef100_C4V8X8 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
           RepID=C4V8X8_NOSCE
          Length = 1143

 Score =  131 bits (330), Expect = 3e-29
 Identities = 71/174 (40%), Positives = 110/174 (63%), Gaps = 1/174 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E +W++I+ +F++ GLV QQ+ S+++FV   MQ ++DESP I +  +     G +     
Sbjct: 8   EYSWDIISKFFEQKGLVGQQIDSFDQFVKTKMQEVIDESPLITV--QSTLSAGNET---R 62

Query: 205 TKVVIKFGQLRVSKP-NFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPET 381
            K+ +KFGQ+ VSKP ++TE +G   TL PN+ARLR++TY + LY D+ KTT    + E+
Sbjct: 63  KKITLKFGQIYVSKPPSYTEADGTTITLTPNEARLRDITYLSQLYIDIVKTT----ESES 118

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           G  +       ++  G +PVM++S +C  + L+E EL  +GEC  D GGYFIIN
Sbjct: 119 GVVD--QHRYSRIPFGSLPVMVKSSYCSTYKLSEEELIKIGECEYDVGGYFIIN 170

[174][TOP]
>UniRef100_Q6QN96 DNA-directed RNA polymerase n=1 Tax=Cochliobolus heterostrophus
           RepID=Q6QN96_COCHE
          Length = 1208

 Score =  129 bits (324), Expect = 1e-28
 Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 25/204 (12%)
 Frame = +1

Query: 7   DADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR 186
           D  +  ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P  
Sbjct: 19  DDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDE 78

Query: 187 -DAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV- 360
            D P    +  IKFG++ +++P  TE +G    LYP++ARLRNLTYS  +  D+    + 
Sbjct: 79  DDNPIIKRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMV 138

Query: 361 --RLVDPETGEEE---------------------ATSEEPEKVFIGRVPVMLRSRFCLLH 471
                DPE  E+E                            +VFIG++PVMLRS  C L 
Sbjct: 139 AREGRDPEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLR 198

Query: 472 NLNEFELNSLGECHVDQGGYFIIN 543
             ++ +L +L EC  DQGGYF+IN
Sbjct: 199 AQSDADLFALNECPYDQGGYFVIN 222

[175][TOP]
>UniRef100_Q9V115 DNA-directed RNA polymerase n=1 Tax=Pyrococcus abyssi
           RepID=Q9V115_PYRAB
          Length = 1117

 Score =  128 bits (321), Expect = 3e-28
 Identities = 72/181 (39%), Positives = 100/181 (55%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           P   +++ +D W V+ +Y+ E GLVRQ L SYN F+   +Q +VDE   I          
Sbjct: 4   PTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIK--------- 54

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
             D PD      +KFG++RV +P F E +G+   LYP  AR+RNLTYS PLY ++     
Sbjct: 55  -PDIPDFE----VKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI- 108

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
                         +EP +V IG +P+ML+S+ C L+ L++ EL  LGE   D GGYFII
Sbjct: 109 ----------RGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFII 158

Query: 541 N 543
           N
Sbjct: 159 N 159

[176][TOP]
>UniRef100_B6YT15 DNA-directed RNA polymerase n=1 Tax=Thermococcus onnurineus NA1
           RepID=B6YT15_THEON
          Length = 1120

 Score =  128 bits (321), Expect = 3e-28
 Identities = 72/181 (39%), Positives = 101/181 (55%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           P   D++ +D W V+ AY+ E GLVRQ L SYN F+   MQ++++E   I          
Sbjct: 4   PTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDYGMQQVINEFGGIK--------- 54

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
             D PD      +KFG++R+ +P F E  G+   LYP  AR+RNLTYS PLY ++     
Sbjct: 55  -PDIPDFE----VKFGKIRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVV- 108

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
                        ++EP +V IG +P+ML+S+ C L+ L++ EL  LGE   D GGYFII
Sbjct: 109 ----------NGIAQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFII 158

Query: 541 N 543
           N
Sbjct: 159 N 159

[177][TOP]
>UniRef100_B2W4R0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
           Pt-1C-BFP RepID=B2W4R0_PYRTR
          Length = 1208

 Score =  127 bits (319), Expect = 5e-28
 Identities = 74/198 (37%), Positives = 110/198 (55%), Gaps = 25/198 (12%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGR-DAPDE 201
           ED W VI+++FD  GLV QQL SY+EF   T+Q +V E+  ++L     Y P   D P  
Sbjct: 25  EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNQPYNPDEEDNPII 84

Query: 202 NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV---D 372
             +  +KFG++ +++P  TE +G    LYP++ARLRNLTYS  +  D+    +      D
Sbjct: 85  KRRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRVMVAREGRD 144

Query: 373 PETGEEEA-------------------TSEE--PEKVFIGRVPVMLRSRFCLLHNLNEFE 489
           P+  ++E                    +S++    +VFIG++PVMLRS  C L   ++ +
Sbjct: 145 PDADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKLPVMLRSELCHLRAQSDAD 204

Query: 490 LNSLGECHVDQGGYFIIN 543
           L +L EC  DQGGYF+IN
Sbjct: 205 LFALNECPYDQGGYFVIN 222

[178][TOP]
>UniRef100_O59226 DNA-directed RNA polymerase n=1 Tax=Pyrococcus horikoshii
           RepID=O59226_PYRHO
          Length = 1117

 Score =  126 bits (316), Expect = 1e-27
 Identities = 71/181 (39%), Positives = 101/181 (55%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           P   +++ +D W V+ +Y++E GLVRQ L SYN F+   +Q +VDE   I          
Sbjct: 4   PTVVEVTPDDLWIVMESYWEEKGLVRQHLDSYNAFIERGLQEVVDEFGGIK--------- 54

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
             D PD      +KFG++RV +P F E +G+   LYP  AR+RNLTYS PLY ++     
Sbjct: 55  -PDIPDFE----VKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI- 108

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
                         ++P +V IG +P+ML+S+ C L+ L++ EL  LGE   D GGYFII
Sbjct: 109 ----------RGIEQDPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFII 158

Query: 541 N 543
           N
Sbjct: 159 N 159

[179][TOP]
>UniRef100_C6A1F9 DNA-directed RNA polymerase n=1 Tax=Thermococcus sibiricus MM 739
           RepID=C6A1F9_THESM
          Length = 1118

 Score =  125 bits (314), Expect = 2e-27
 Identities = 69/181 (38%), Positives = 101/181 (55%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           P   +++ +D W ++ AY+DE GLVRQ L SYN F+   MQ ++ E   +          
Sbjct: 4   PTIVEVTPDDLWHIMKAYWDEKGLVRQHLDSYNAFIEHGMQEVISEFEGVK--------- 54

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
             D PD      +KFG++R+ +P F E +G+   LYP  AR+RNLTYS P++  +     
Sbjct: 55  -PDIPDFE----VKFGRVRLGEPEFQEAHGQRKPLYPIDARIRNLTYSAPVFLGMIPVV- 108

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
                     +   +EP +V IG +PVML+S+ C L+NL++ EL + GE   D GGYFII
Sbjct: 109 ----------KGIEQEPVEVRIGELPVMLKSKICRLYNLSDEELIAHGEDPKDPGGYFII 158

Query: 541 N 543
           N
Sbjct: 159 N 159

[180][TOP]
>UniRef100_P31814 DNA-directed RNA polymerase subunit B n=1 Tax=Thermococcus celer
           RepID=RPOB_THECE
          Length = 1122

 Score =  125 bits (314), Expect = 2e-27
 Identities = 70/181 (38%), Positives = 99/181 (54%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           P   D++ +D W V+ AY+ E GLVRQ L SYN F+   MQ ++DE   +          
Sbjct: 6   PTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVK--------- 56

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
             D PD      +KFG++R+ +P F E  G+   LYP  AR+RNLTYS P+Y ++     
Sbjct: 57  -PDIPDFE----VKFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVV- 110

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
                        S+E  +V IG +P+ML+S+ C L+ L++ EL  LGE   D GGYFI+
Sbjct: 111 ----------NGVSQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIV 160

Query: 541 N 543
           N
Sbjct: 161 N 161

[181][TOP]
>UniRef100_Q8U0M3 DNA-directed RNA polymerase n=1 Tax=Pyrococcus furiosus
           RepID=Q8U0M3_PYRFU
          Length = 1117

 Score =  125 bits (313), Expect = 3e-27
 Identities = 70/181 (38%), Positives = 101/181 (55%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           P   D++ +D W V+ +Y+ E GLVRQ L SYN F+   +Q +V+E   I          
Sbjct: 4   PTVVDVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGIK--------- 54

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
             D PD      +KFG++RV +P F E +G+   LYP  AR+RNLTY+ PLY ++     
Sbjct: 55  -PDIPDFE----VKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYAAPLYLEMIPVI- 108

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
                     +   ++P +V IG +P+ML+S+ C L+ L++ EL  LGE   D GGYFII
Sbjct: 109 ----------KGVEQDPVEVRIGELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFII 158

Query: 541 N 543
           N
Sbjct: 159 N 159

[182][TOP]
>UniRef100_C5LU72 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
           RepID=C5LU72_9ALVE
          Length = 1171

 Score =  121 bits (303), Expect = 4e-26
 Identities = 73/178 (41%), Positives = 100/178 (56%), Gaps = 36/178 (20%)
 Frame = +1

Query: 118 MQRLVDESPDIVLIPEDQ----------YVP---------------------GRDAPDE- 201
           MQ +VDE P I +IP++Q          Y P                     GR+ P   
Sbjct: 1   MQEIVDECPPITIIPQNQPVCRLNGLSQYDPNTSKQQQMQQNVGYVYELSRLGREGPGVY 60

Query: 202 -NTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPE 378
            ++   ++FGQL ++KP   E +G   +L PNQARLRNLTYS+P+Y +VT+TT  L DP+
Sbjct: 61  MDSSFPVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYALADPD 120

Query: 379 --TGEEEATSEEP-EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               E++  SE+   K+ IGR+P+ML+S +C L N  E  L  +GEC  DQGGYFIIN
Sbjct: 121 DPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIIN 178

[183][TOP]
>UniRef100_B5IVZ8 DNA-directed RNA polymerase n=1 Tax=Thermococcus barophilus MP
           RepID=B5IVZ8_9EURY
          Length = 1118

 Score =  120 bits (302), Expect = 5e-26
 Identities = 67/181 (37%), Positives = 99/181 (54%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           P   +++ +D W V+ +Y++E GLVRQ L SYN F+   MQ +++E   I          
Sbjct: 4   PTVVEVTPDDLWSVMESYWNEKGLVRQHLDSYNAFIDHGMQEVINEFGGIK--------- 54

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
             D P+      +KFG++R+ +P F E  G+   LYP  AR+RNLTY+ P+Y ++     
Sbjct: 55  -PDIPNFE----VKFGKIRLGEPEFQEAQGQRKPLYPMDARIRNLTYAAPIYLEMIPVV- 108

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
                         +EP +V IG +P+ML+S+ C L+  +E EL  LGE   D GGYFII
Sbjct: 109 ----------NGIEQEPVEVRIGELPIMLKSKACRLYGKSEEELIKLGEDPKDPGGYFII 158

Query: 541 N 543
           N
Sbjct: 159 N 159

[184][TOP]
>UniRef100_Q5JE32 DNA-directed RNA polymerase n=1 Tax=Thermococcus kodakarensis
           RepID=Q5JE32_PYRKO
          Length = 1123

 Score =  119 bits (297), Expect = 2e-25
 Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           ++ ++ W V+ +Y+ E G VRQ L SYN F+   +Q +V+E  ++V             P
Sbjct: 12  LTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVV-------------P 58

Query: 196 D-ENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
           D  N KV  KFG++R+ +P F E  G+   LYP  AR+RNLTYS PLY ++         
Sbjct: 59  DIPNFKV--KFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVV----- 111

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                     +EP +V IG +P+ML+S+ C L+ L++ EL  LGE   D GGYFIIN
Sbjct: 112 ------NGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIIN 162

[185][TOP]
>UniRef100_A1RWW6 DNA-directed RNA polymerase n=1 Tax=Thermofilum pendens Hrk 5
           RepID=A1RWW6_THEPD
          Length = 1130

 Score =  118 bits (296), Expect = 2e-25
 Identities = 75/179 (41%), Positives = 101/179 (56%), Gaps = 1/179 (0%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           A +S ED W V+ AY DE GLVRQ L S+N F+   +Q +VDE   I +           
Sbjct: 8   AKLSREDRWRVVKAYVDELGLVRQHLDSFNAFLERGLQEIVDEVGGIKV----------- 56

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
              E+  V IKFG++ V +P F E +G    L P  ARLRN+TY+ PLY  +T      V
Sbjct: 57  ---ESQGVEIKFGKIEVGQPTFREADGSDLALTPMIARLRNITYAAPLYLTMT----LYV 109

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNL-NEFELNSLGECHVDQGGYFIIN 543
           D   GEE  T    E V+IG +P+M++S+ C+L+ L +E E+   GE   D GGYFI+N
Sbjct: 110 D---GEERRT----ESVYIGSLPIMVKSKKCVLYGLKSEDEIVKYGEDPYDPGGYFIVN 161

[186][TOP]
>UniRef100_C4PBI7 DNA-directed RNA polymerase n=1 Tax=Epichloe festucae
           RepID=C4PBI7_9HYPO
          Length = 1261

 Score =  117 bits (294), Expect = 4e-25
 Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 34/214 (15%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI-PEDQYVP 180
           +D  I+ ED W VI+++F+  GLV QQ  S++EF   T+Q LV+E   I L  P     P
Sbjct: 16  DDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPP 75

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
           G        +  IKFG + VS+P  +E +G   +L P + R RNLTY++PLY ++TK   
Sbjct: 76  GIKIALRRYE--IKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVS 133

Query: 361 RLV----------DPETGEEEATSEEPEK-----------------------VFIGRVPV 441
             +          D +  E   T E P K                       VF+G++P+
Sbjct: 134 AAIEREVPLHEMDDAQQAEYAKTGENPTKLIWEQEESPEDDDAGKSEDWKNMVFVGKLPI 193

Query: 442 MLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           M++S+ C L    +  L  + EC  DQGGYF+IN
Sbjct: 194 MVKSKICHLSRETDESLFMVNECPYDQGGYFVIN 227

[187][TOP]
>UniRef100_C5A209 DNA-directed RNA polymerase n=1 Tax=Thermococcus gammatolerans EJ3
           RepID=C5A209_THEGJ
          Length = 1122

 Score =  117 bits (294), Expect = 4e-25
 Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 4/181 (2%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE----SPDIVLIPEDQYVP 180
           D++ +D W V+ +Y+ E GLVRQ L SYN F+   +Q +++E     PDI          
Sbjct: 10  DVTPDDLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDI---------- 59

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
                       +KFG++R+ +P F E  G+   LYP  AR+RNLTYS PL+ +      
Sbjct: 60  --------PNFEVKFGKIRLGEPIFQEAQGQRRPLYPMDARIRNLTYSAPLFLE------ 105

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
            L+    G E+    EP +V IG +P+ML+S+ C L+ L++ EL  LGE   D GGYFII
Sbjct: 106 -LIPVVNGIEQ----EPVEVRIGELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFII 160

Query: 541 N 543
           N
Sbjct: 161 N 161

[188][TOP]
>UniRef100_B7R288 DNA-directed RNA polymerase n=1 Tax=Thermococcus sp. AM4
           RepID=B7R288_9EURY
          Length = 1122

 Score =  117 bits (294), Expect = 4e-25
 Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 4/181 (2%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDE----SPDIVLIPEDQYVP 180
           D++ +D W V+ +Y+ E GLVRQ L SYN F+   +Q +++E     PDI          
Sbjct: 10  DVTPDDLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDI---------- 59

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTV 360
                       +KFG++R+ +P F E  G+   LYP  AR+RNLTYS PL+ +      
Sbjct: 60  --------PNFEVKFGKIRLGEPIFQEAQGQRRPLYPMDARIRNLTYSAPLFLE------ 105

Query: 361 RLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
            L+    G E+    EP +V IG +P+ML+S+ C L+ L++ EL  LGE   D GGYFII
Sbjct: 106 -LIPVVNGIEQ----EPVEVRIGELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFII 160

Query: 541 N 543
           N
Sbjct: 161 N 161

[189][TOP]
>UniRef100_C7ZA30 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI
           77-13-4 RepID=C7ZA30_NECH7
          Length = 1261

 Score =  115 bits (289), Expect = 2e-24
 Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 33/209 (15%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLI-PEDQYVPGRDA 192
           I+ ED W VI+++F+  GLV QQ  S++EF   T+Q LV+E   I L  P     PG   
Sbjct: 21  ITPEDCWTVISSFFESKGLVSQQTDSFDEFTQTTIQDLVNEYSVISLDQPNPPSPPGVSI 80

Query: 193 PDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
                +  IKFG + VS+P  +E +G   +L P + R RNLTY++PLY  +TK     V+
Sbjct: 81  ALRRYE--IKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSVAVE 138

Query: 373 PET----------GEEEATSEEPEK----------------------VFIGRVPVMLRSR 456
            E            E + T E P K                      VF+G++P+M++S+
Sbjct: 139 KEVPLHEMDEDQQAEYKRTGENPTKLVWELEESGDDEGKADDSWKDMVFVGKLPIMVKSK 198

Query: 457 FCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            C L + ++  L  + EC  DQGGYF+IN
Sbjct: 199 ICHLSSEHDDNLFLVNECPYDQGGYFVIN 227

[190][TOP]
>UniRef100_UPI000196666C hypothetical protein METSMIF1_00898 n=1 Tax=Methanobrevibacter
           smithii DSM 2374 RepID=UPI000196666C
          Length = 514

 Score =  114 bits (284), Expect = 6e-24
 Identities = 63/173 (36%), Positives = 95/173 (54%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E+ W++++A+FD++ LV   ++SYN+F++  +Q ++D +  I L              EN
Sbjct: 3   ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDITEPITL--------------EN 48

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
            K  +K G+L + KP   E +G    +YP +ARLRNL YS  +Y ++             
Sbjct: 49  GKYTLKTGKLFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMALN---------- 98

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            EE      EKV+IG +PVML+S  C LH L++ EL   GE   D GGYFI+N
Sbjct: 99  -EEGEDNPLEKVYIGELPVMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVN 150

[191][TOP]
>UniRef100_A5ULN8 DNA-dependent RNA polymerase, subunit B, RpoB n=1
           Tax=Methanobrevibacter smithii ATCC 35061
           RepID=A5ULN8_METS3
          Length = 514

 Score =  114 bits (284), Expect = 6e-24
 Identities = 63/173 (36%), Positives = 95/173 (54%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E+ W++++A+FD++ LV   ++SYN+F++  +Q ++D +  I L              EN
Sbjct: 3   ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDITEPITL--------------EN 48

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
            K  +K G+L + KP   E +G    +YP +ARLRNL YS  +Y ++             
Sbjct: 49  GKYTLKTGKLFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMALN---------- 98

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            EE      EKV+IG +PVML+S  C LH L++ EL   GE   D GGYFI+N
Sbjct: 99  -EEGEDNPLEKVYIGELPVMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVN 150

[192][TOP]
>UniRef100_B9AEP8 Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii
           DSM 2375 RepID=B9AEP8_METSM
          Length = 514

 Score =  114 bits (284), Expect = 6e-24
 Identities = 63/173 (36%), Positives = 95/173 (54%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E+ W++++A+FD++ LV   ++SYN+F++  +Q ++D +  I L              EN
Sbjct: 3   ENNWKLVDAFFDKYDLVDHHIKSYNDFINSGIQNIIDITEPITL--------------EN 48

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
            K  +K G+L + KP   E +G    +YP +ARLRNL YS  +Y ++             
Sbjct: 49  GKYTLKTGKLFIEKPFTKEADGSKSMIYPAEARLRNLNYSAHMYLEMALN---------- 98

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
            EE      EKV+IG +PVML+S  C LH L++ EL   GE   D GGYFI+N
Sbjct: 99  -EEGEDNPLEKVYIGELPVMLKSDICHLHGLSDEELIEQGEDPQDLGGYFIVN 150

[193][TOP]
>UniRef100_UPI0000E20419 PREDICTED: DNA directed RNA polymerase II polypeptide B isoform 1
           n=1 Tax=Pan troglodytes RepID=UPI0000E20419
          Length = 1099

 Score =  112 bits (280), Expect = 2e-23
 Identities = 54/112 (48%), Positives = 77/112 (68%)
 Frame = +1

Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387
           + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++      GE
Sbjct: 8   RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62

Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           E+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 63  EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113

[194][TOP]
>UniRef100_UPI00005A2A5D PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
           polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
           17 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2A5D
          Length = 1099

 Score =  112 bits (280), Expect = 2e-23
 Identities = 54/112 (48%), Positives = 77/112 (68%)
 Frame = +1

Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387
           + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++      GE
Sbjct: 8   RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62

Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           E+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 63  EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113

[195][TOP]
>UniRef100_Q583H5 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
           RepID=Q583H5_9TRYP
          Length = 1190

 Score =  112 bits (280), Expect = 2e-23
 Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 4/184 (2%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           N ADI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+     +IV   +DQ+ PG
Sbjct: 34  NTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFL-LRIPRMARSLLEIVPRQDDQFDPG 92

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGT----LYPNQARLRNLTYSTPLYCDVTK 351
                E  +  +    + V  P+  E +G + T    L+PN+ RLR+LTY       V +
Sbjct: 93  VHVESEPDQYRLSLEDVVVGNPSH-EMSGFSRTEMHPLFPNECRLRDLTYDA-----VAQ 146

Query: 352 TTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
            T+ +    + EE+      + + +GR+P+ML+S  C L N +E EL  L EC  DQGGY
Sbjct: 147 VTLAIRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGY 206

Query: 532 FIIN 543
           FI+N
Sbjct: 207 FIVN 210

[196][TOP]
>UniRef100_C9ZN35 DNA-directed RNA polymerase II subunit 2, putative n=1
           Tax=Trypanosoma brucei gambiense DAL972
           RepID=C9ZN35_TRYBG
          Length = 1189

 Score =  112 bits (280), Expect = 2e-23
 Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 4/184 (2%)
 Frame = +1

Query: 4   NDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPG 183
           N ADI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+     +IV   +DQ+ PG
Sbjct: 33  NTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFL-LRIPRMARSLLEIVPRQDDQFDPG 91

Query: 184 RDAPDENTKVVIKFGQLRVSKPNFTENNGEAGT----LYPNQARLRNLTYSTPLYCDVTK 351
                E  +  +    + V  P+  E +G + T    L+PN+ RLR+LTY       V +
Sbjct: 92  VHVESEPDQYRLSLEDVVVGNPSH-EMSGFSRTEMHPLFPNECRLRDLTYDA-----VAQ 145

Query: 352 TTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGY 531
            T+ +    + EE+      + + +GR+P+ML+S  C L N +E EL  L EC  DQGGY
Sbjct: 146 VTLAIRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGY 205

Query: 532 FIIN 543
           FI+N
Sbjct: 206 FIVN 209

[197][TOP]
>UniRef100_C9J4M6 Putative uncharacterized protein POLR2B n=1 Tax=Homo sapiens
           RepID=C9J4M6_HUMAN
          Length = 207

 Score =  112 bits (280), Expect = 2e-23
 Identities = 54/112 (48%), Positives = 77/112 (68%)
 Frame = +1

Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387
           + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++      GE
Sbjct: 8   RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62

Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           E+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 63  EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113

[198][TOP]
>UniRef100_B4DH29 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4DH29_HUMAN
          Length = 1099

 Score =  112 bits (280), Expect = 2e-23
 Identities = 54/112 (48%), Positives = 77/112 (68%)
 Frame = +1

Query: 208 KVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE 387
           + ++KF Q+ +SKP   E +G    + PN+ARLRNLTYS PLY D+TKT ++      GE
Sbjct: 8   RYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK-----EGE 62

Query: 388 EEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           E+  ++  +K FIG++P+MLRS +CLL+ L + +L  L EC +D GGYFIIN
Sbjct: 63  EQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113

[199][TOP]
>UniRef100_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348
           RepID=A9CSV4_ENTBH
          Length = 1138

 Score =  112 bits (280), Expect = 2e-23
 Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 1/173 (0%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           E+ W +I ++FD+ GLVRQQL S+N+FV + MQ ++DE+  I +    + +P      E 
Sbjct: 19  ENNWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIIDENSIISV----KSIPTAGNSIER 74

Query: 205 TKVVIKFGQLRVSKPNF-TENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPET 381
            ++ + FGQ+ +  P   TE +G +  + PN+ARLR+LTY   ++ DV K        E 
Sbjct: 75  -EIKLYFGQISILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVKKAYY-----EN 128

Query: 382 GEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
           G E   S +  +V  G +PVM++S  C L  LN+ +   LGEC  DQGGYFII
Sbjct: 129 GIEVDVS-KTIRVPFGSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFII 180

[200][TOP]
>UniRef100_O27123 DNA-directed RNA polymerase subunit B'' n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=RPOB2_METTH
          Length = 519

 Score =  112 bits (279), Expect = 2e-23
 Identities = 65/173 (37%), Positives = 95/173 (54%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           + AW +++A+FD++ LV   + SYN+FVS  +Q ++D S  I L              E 
Sbjct: 9   KSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL--------------EQ 54

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
            K  ++ G++ + KP   E +G    +YP +ARLRNLTYS  +  ++     RL+     
Sbjct: 55  GKYRVETGKVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM-----RLL----- 104

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +E     E EKV+IG +PVML+S  C LH L+  EL   GE   D GGYFI+N
Sbjct: 105 KEGGPETEFEKVYIGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVN 157

[201][TOP]
>UniRef100_Q1L5Z0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana sylvestris
           RepID=Q1L5Z0_NICSY
          Length = 1087

 Score =  110 bits (276), Expect = 5e-23
 Identities = 54/96 (56%), Positives = 69/96 (71%)
 Frame = +1

Query: 256 TENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRV 435
           TE++GE  TL+P  ARLRNLTYS PLY DVTK  ++      GEE   +++  KVFIG+V
Sbjct: 3   TESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKV 60

Query: 436 PVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           P+MLRS +C L+  +E +L  LGEC +DQGGYFIIN
Sbjct: 61  PIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 96

[202][TOP]
>UniRef100_Q58444 DNA-directed RNA polymerase subunit B'' n=1 Tax=Methanocaldococcus
           jannaschii RepID=RPOB2_METJA
          Length = 498

 Score =  110 bits (276), Expect = 5e-23
 Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 1/170 (0%)
 Frame = +1

Query: 37  EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
           E+++AYF EHGL+  Q++SYN+FV   +Q+++DE   I    E +   G           
Sbjct: 6   ELVDAYFKEHGLIDHQIESYNDFVENRLQKIIDEVGYI----ETEITGGYK--------- 52

Query: 217 IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE-EE 393
           +K G+++V KP   E +G    + P +AR+R+LTYS PLY ++T        P  GE E+
Sbjct: 53  VKLGKIKVGKPVIKEADGSIRPITPMEARIRDLTYSVPLYLEMT--------PIIGEGED 104

Query: 394 ATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           A   E  +V+IG +PVML S+ C L+  +  EL  LGE   D  GYFIIN
Sbjct: 105 AREGETVEVYIGELPVMLGSKICHLYGKSREELIDLGEDPEDPFGYFIIN 154

[203][TOP]
>UniRef100_P09844 DNA-directed RNA polymerase subunit B'' n=1 Tax=Methanothermobacter
           thermautotrophicus str. Winter RepID=RPOB2_METTW
          Length = 515

 Score =  109 bits (273), Expect = 1e-22
 Identities = 64/173 (36%), Positives = 94/173 (54%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           + AW +++A+FD++ LV   + SYN+FVS  +Q ++D S  I L              E 
Sbjct: 3   KSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL--------------EQ 48

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
            +  ++ G++ + KP   E +G    +YP +ARLRNLTYS  +  ++     RL+     
Sbjct: 49  GQYTVETGKVTIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM-----RLL----- 98

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +E  +  E EKV IG +PVML+S  C LH L   EL   GE   D GGYFI+N
Sbjct: 99  KEGGSETEFEKVHIGELPVMLKSEICHLHGLGRDELIEKGEDPADLGGYFIVN 151

[204][TOP]
>UniRef100_C7P939 RNA polymerase beta subunit n=1 Tax=Methanocaldococcus fervens AG86
           RepID=C7P939_METFA
          Length = 497

 Score =  109 bits (272), Expect = 1e-22
 Identities = 64/169 (37%), Positives = 95/169 (56%)
 Frame = +1

Query: 37  EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
           E+++AYF EHGL+  Q++SYN+FV   +Q+++DE              G    + +    
Sbjct: 3   ELVDAYFKEHGLIDHQIESYNDFVENRLQKIIDE-------------VGYIETEISGGFK 49

Query: 217 IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEA 396
           +K G++++ KP   E +G    + P +AR+R+LTYS PLY ++T           GEEE 
Sbjct: 50  VKLGKVKIGKPVIKEADGSIRPITPMEARIRDLTYSVPLYLEMTPII------GEGEEEV 103

Query: 397 TSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
             E  E V+IG +PVML S+ C L+  ++ EL  LGE   D  GYFIIN
Sbjct: 104 VGETVE-VYIGELPVMLGSKICHLYGKSKEELIELGEDPEDPFGYFIIN 151

[205][TOP]
>UniRef100_C5U6G2 RNA polymerase beta subunit n=1 Tax=Methanocaldococcus infernus ME
           RepID=C5U6G2_9EURY
          Length = 493

 Score =  109 bits (272), Expect = 1e-22
 Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
 Frame = +1

Query: 40  VINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVI 219
           +I+AYF EH LV  QL+SYN+FV   +Q++VDE   +     D  +P      E  KV  
Sbjct: 1   MIDAYFKEHSLVEHQLESYNDFVENRLQKIVDEIGYV-----DTDIP------EGFKV-- 47

Query: 220 KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEE-EA 396
           KFG++++ KP   E +G    + P +AR+R +TYS P+Y ++T        P  G+E E 
Sbjct: 48  KFGKIKLGKPIIKEADGSIREITPMEARIREITYSVPIYLEMT--------PIYGKEGEE 99

Query: 397 TSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              E   V+IG +PVML S+ CLL+  +E E+  +GE   D+ GYFIIN
Sbjct: 100 REGETLDVYIGELPVMLGSKICLLYGKSEEEIIKMGEDPRDRFGYFIIN 148

[206][TOP]
>UniRef100_C3N7P9 DNA-directed RNA polymerase n=2 Tax=Sulfolobus islandicus
           RepID=C3N7P9_SULIY
          Length = 1131

 Score =  107 bits (268), Expect = 4e-22
 Identities = 61/178 (34%), Positives = 94/178 (52%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           +++S ++ W+VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 6   SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
            P E   + ++ G++R+ KP   E++     + P +ARLRNLTY+ PL+  +        
Sbjct: 53  -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 E     EPE+V+IG +P+ML+S    +      +L  +GE   D GGYFI+N
Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158

[207][TOP]
>UniRef100_C3MY98 DNA-directed RNA polymerase n=3 Tax=Sulfolobus islandicus
           RepID=C3MY98_SULIM
          Length = 1131

 Score =  107 bits (268), Expect = 4e-22
 Identities = 61/178 (34%), Positives = 94/178 (52%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           +++S ++ W+VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 6   SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
            P E   + ++ G++R+ KP   E++     + P +ARLRNLTY+ PL+  +        
Sbjct: 53  -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 E     EPE+V+IG +P+ML+S    +      +L  +GE   D GGYFI+N
Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158

[208][TOP]
>UniRef100_C3MRK2 DNA-directed RNA polymerase n=1 Tax=Sulfolobus islandicus L.S.2.15
           RepID=C3MRK2_SULIL
          Length = 1131

 Score =  107 bits (268), Expect = 4e-22
 Identities = 61/178 (34%), Positives = 94/178 (52%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           +++S ++ W+VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 6   SNLSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
            P E   + ++ G++R+ KP   E++     + P +ARLRNLTY+ PL+  +        
Sbjct: 53  -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 E     EPE+V+IG +P+ML+S    +      +L  +GE   D GGYFI+N
Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158

[209][TOP]
>UniRef100_B8YB55 DNA-directed RNA polymerase n=1 Tax=Sulfolobus shibatae B12
           RepID=B8YB55_SULSH
          Length = 1131

 Score =  107 bits (268), Expect = 4e-22
 Identities = 61/178 (34%), Positives = 94/178 (52%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           +++S ++ W+VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 6   SNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 52

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
            P E   + ++ G++R+ KP   E++     + P +ARLRNLTY+ PL+  +        
Sbjct: 53  -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 106

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 E     EPE+V+IG +P+ML+S    +      +L  +GE   D GGYFI+N
Sbjct: 107 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 158

[210][TOP]
>UniRef100_Q2NEK2 RpoB2 n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEK2_METST
          Length = 502

 Score =  106 bits (265), Expect = 1e-21
 Identities = 58/173 (33%), Positives = 96/173 (55%)
 Frame = +1

Query: 25  EDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDEN 204
           ++AW +++++FDE+ +V   ++SYN+F+   +Q +VD +  I L              ++
Sbjct: 3   KNAWSLVDSFFDEYDIVDHHIRSYNDFLDNKIQEIVDITEPITL--------------DH 48

Query: 205 TKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETG 384
            +  IK G + + KP   E +G    + P++ARLRNL YS  +Y D+             
Sbjct: 49  GEYTIKTGDVEIVKPFIKEADGSKSIIEPSEARLRNLNYSAHMYLDMALV---------- 98

Query: 385 EEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           + ++   E EKV+IG +PVML+S+ C L  L++ EL  +GE   D GGYFI+N
Sbjct: 99  KGDSDDYEMEKVYIGELPVMLKSKACHLCGLSDEELEKVGEDPQDPGGYFIVN 151

[211][TOP]
>UniRef100_Q980R0 DNA-directed RNA polymerase, subunit B'' (RpoB2) n=1 Tax=Sulfolobus
           solfataricus RepID=Q980R0_SULSO
          Length = 480

 Score =  106 bits (264), Expect = 1e-21
 Identities = 60/178 (33%), Positives = 93/178 (52%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           ++++ ++ W VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 3   SNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 49

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
            P E   + ++ G++R+ KP   E++     + P +ARLRNLTY+ PL+  +        
Sbjct: 50  -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 103

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 E     EPE+V+IG +P+ML+S    +      +L  +GE   D GGYFI+N
Sbjct: 104 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 155

[212][TOP]
>UniRef100_C5SSJ4 DNA-directed RNA polymerase n=1 Tax=Sulfolobus solfataricus 98/2
           RepID=C5SSJ4_SULSO
          Length = 1124

 Score =  106 bits (264), Expect = 1e-21
 Identities = 60/178 (33%), Positives = 93/178 (52%)
 Frame = +1

Query: 10  ADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRD 189
           ++++ ++ W VI AYF   GLVRQ L SYN+FV   +Q ++DE  +I             
Sbjct: 3   SNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI------------- 49

Query: 190 APDENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLV 369
            P E   + ++ G++R+ KP   E++     + P +ARLRNLTY+ PL+  +        
Sbjct: 50  -PTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV----- 103

Query: 370 DPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                 E     EPE+V+IG +P+ML+S    +      +L  +GE   D GGYFI+N
Sbjct: 104 ------ENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVN 155

[213][TOP]
>UniRef100_A4I6A8 DNA-directed RNA polymerase n=1 Tax=Leishmania infantum
           RepID=A4I6A8_LEIIN
          Length = 1181

 Score =  105 bits (263), Expect = 2e-21
 Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 4/185 (2%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES  ++   +DQY P
Sbjct: 25  PND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVIPRQDDQYDP 81

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAG----TLYPNQARLRNLTYSTPLYCDVT 348
           G    ++  +  +    + +  P+   ++  AG     L+PN+ RLR++TY       + 
Sbjct: 82  GVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVTLG 141

Query: 349 KTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528
              V L  P       T      V +GR+P+ML+S  C L   +E EL  L EC  DQGG
Sbjct: 142 ---VELYHPHADTPHDTFLR--NVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGG 196

Query: 529 YFIIN 543
           YF+IN
Sbjct: 197 YFVIN 201

[214][TOP]
>UniRef100_A4HIZ1 DNA-directed RNA polymerase n=1 Tax=Leishmania braziliensis
           RepID=A4HIZ1_LEIBR
          Length = 1185

 Score =  105 bits (263), Expect = 2e-21
 Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 4/185 (2%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES  ++   +DQY P
Sbjct: 29  PND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVIPRQDDQYDP 85

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENNGEAG----TLYPNQARLRNLTYSTPLYCDVT 348
           G    ++  +  +    + +  P+   ++  AG     L+PN+ RLR++TY       + 
Sbjct: 86  GVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVTLG 145

Query: 349 KTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528
              V L  P       T      V +GR+P+ML+S  C L   +E EL  L EC  DQGG
Sbjct: 146 ---VELYHPHADTPHDTFLR--NVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGG 200

Query: 529 YFIIN 543
           YF+IN
Sbjct: 201 YFVIN 205

[215][TOP]
>UniRef100_A0B556 DNA-directed RNA polymerase, subunit B' n=1 Tax=Methanosaeta
           thermophila PT RepID=A0B556_METTP
          Length = 496

 Score =  105 bits (263), Expect = 2e-21
 Identities = 64/165 (38%), Positives = 93/165 (56%)
 Frame = +1

Query: 49  AYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVIKFG 228
           AYF +  LV   + S+NEF+   +Q+++DE   I    E+ YV              K G
Sbjct: 10  AYFTKDKLVHHHINSFNEFIDRGLQKVIDEVRIIETNIENTYV--------------KLG 55

Query: 229 QLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEE 408
           ++RV KP   E +G    LYPN ARLRNLTY++P+     K  + +VD   GEE+    E
Sbjct: 56  KIRVEKPVVMEADGSVERLYPNDARLRNLTYASPI-----KLEMSIVD--RGEEK----E 104

Query: 409 PEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           P +  IG +P+M+ S+ C L+ ++E E+ S GE  +D GGYFI+N
Sbjct: 105 PVEAMIGMLPIMVMSKVCNLYGMSEEEMVSYGEDPLDPGGYFIVN 149

[216][TOP]
>UniRef100_A6UV52 RNA polymerase beta subunit n=1 Tax=Methanococcus aeolicus Nankai-3
           RepID=A6UV52_META3
          Length = 510

 Score =  105 bits (262), Expect = 2e-21
 Identities = 61/168 (36%), Positives = 93/168 (55%)
 Frame = +1

Query: 40  VINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVVI 219
           +++ +F E+ LV   + SYN+FV  ++Q+++DE+      P +  V G           +
Sbjct: 6   IVDEFFKENSLVEHHINSYNKFVENSIQKVIDEAA-----PIEAEVKGG--------FKV 52

Query: 220 KFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEAT 399
           KFG++RV KP   E +G    +YP +AR+RNL+YS PLY ++T       D E  + E  
Sbjct: 53  KFGKVRVGKPINKEADGSVKEIYPVEARIRNLSYSAPLYLEITPIMGGGEDEEGNKYEVE 112

Query: 400 SEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
             E  + +IG +PVML S  C L+  +E EL  +GE   D  GYFI+N
Sbjct: 113 EGETVEAYIGELPVMLGSIICHLNGKSEDELVKMGEDARDPMGYFIVN 160

[217][TOP]
>UniRef100_Q4Q6P8 DNA-directed RNA polymerase n=1 Tax=Leishmania major
           RepID=Q4Q6P8_LEIMA
          Length = 1185

 Score =  105 bits (261), Expect = 3e-21
 Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 4/185 (2%)
 Frame = +1

Query: 1   PNDADISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVP 180
           PND D+ +ED WEVI+++F E GLV QQL SYN+F+ + + +++ ES  ++   +DQY P
Sbjct: 29  PND-DLDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMI-ESMAVIPRQDDQYDP 85

Query: 181 GRDAPDENTKVVIKFGQLRVSKPNFTENN----GEAGTLYPNQARLRNLTYSTPLYCDVT 348
           G    ++  +  +    + +  P+   ++    G    L+PN+ RLR++TY       + 
Sbjct: 86  GVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFTGGPLPPLFPNECRLRDMTYDAQAQVTLG 145

Query: 349 KTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGG 528
              V L  P       T      V +GR+P+ML+S  C L   +E EL  L EC  DQGG
Sbjct: 146 ---VELYHPHADTPHDTFLR--NVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGG 200

Query: 529 YFIIN 543
           YF+IN
Sbjct: 201 YFVIN 205

[218][TOP]
>UniRef100_Q4CRQ2 DNA-directed RNA polymerase II subunit 2, putative (Fragment) n=1
           Tax=Trypanosoma cruzi RepID=Q4CRQ2_TRYCR
          Length = 617

 Score =  104 bits (260), Expect = 4e-21
 Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 3/180 (1%)
 Frame = +1

Query: 13  DISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDA 192
           DI +ED WE+I+++F E GLV QQ+ SYN+F+ + + R+     +IV   ++Q+ PG   
Sbjct: 33  DIDSEDIWEIISSFFREKGLVHQQIDSYNDFL-LRIPRMARSLLEIVPRQDEQFEPGTQT 91

Query: 193 PDENTKVVIKFGQLRVSKPNFTENN---GEAGTLYPNQARLRNLTYSTPLYCDVTKTTVR 363
             E  +  +    + +  P+   +     E   L+PN+ RLR+LTY         + T+ 
Sbjct: 92  ETEPDQYRLSLEDVVIGNPSHEVSGFSRREMHPLFPNECRLRDLTYDAN-----AQVTLG 146

Query: 364 LVDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +    + EE+      + + +GR+P+ML+S  C L N +E EL  L EC  DQGGYF+I+
Sbjct: 147 IRVYRSREEQPYRTFLQNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVIS 206

[219][TOP]
>UniRef100_Q1L6C3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Homalocladium
           platycladum RepID=Q1L6C3_9CARY
          Length = 875

 Score =  104 bits (259), Expect = 5e-21
 Identities = 51/91 (56%), Positives = 65/91 (71%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++      GEE   +++  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L++ +E +L  LGEC +DQGGYFIIN
Sbjct: 59  SSYCTLYHNSEKDLTELGECPLDQGGYFIIN 89

[220][TOP]
>UniRef100_C9RDL0 RNA polymerase beta subunit n=1 Tax=Methanocaldococcus vulcanius M7
           RepID=C9RDL0_9EURY
          Length = 495

 Score =  103 bits (258), Expect = 6e-21
 Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 1/170 (0%)
 Frame = +1

Query: 37  EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
           E+I+AYF EHGL+  Q++SYN+FV   +Q ++DE              G    + +    
Sbjct: 3   EMIDAYFKEHGLIDHQIESYNDFVENRLQSIIDE-------------VGYIETEISGGYK 49

Query: 217 IKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGE-EE 393
           +K G++++ KP   E +G +  + P +AR+R+LTYS PLY ++         P  GE EE
Sbjct: 50  VKLGKIKIGKPVIKEADGSSRKITPMEARIRDLTYSVPLYLEMI--------PIIGEGEE 101

Query: 394 ATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               +  +V+IG +PVML S+ C L+  +  EL  +GE   D  GYFIIN
Sbjct: 102 EREGDVVEVYIGELPVMLGSKICHLYGKSREELIDMGEDPEDPLGYFIIN 151

[221][TOP]
>UniRef100_Q1L6B6 RNA polymerase II second largest subunit (Fragment) n=1
           Tax=Nepenthes maxima RepID=Q1L6B6_9CARY
          Length = 667

 Score =  103 bits (257), Expect = 8e-21
 Identities = 51/91 (56%), Positives = 64/91 (70%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++      GEE + +++  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVSEAQDFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89

[222][TOP]
>UniRef100_Q1L5B7 RNA polymerase II second largest subunit (Fragment) n=1
           Tax=Camellia japonica RepID=Q1L5B7_9ERIC
          Length = 417

 Score =  103 bits (256), Expect = 1e-20
 Identities = 51/91 (56%), Positives = 63/91 (69%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++      GEE   +++  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89

[223][TOP]
>UniRef100_A4YCQ8 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348
           RepID=A4YCQ8_METS5
          Length = 1124

 Score =  102 bits (255), Expect = 1e-20
 Identities = 59/176 (33%), Positives = 92/176 (52%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           +S +D W ++ AYF   GLVRQ L S+N+F+   +Q ++DE  +I+       +PG    
Sbjct: 2   LSVDDRWVIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEII-----TEIPG---- 52

Query: 196 DENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
                + I+ G++RV KP   E +     + P +ARLRNLTY+ P++  +T         
Sbjct: 53  -----LKIRLGKIRVGKPRVREADKGDKEITPMEARLRNLTYAAPIFLTMTPV------- 100

Query: 376 ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
               E     +P +V IG +P+ML+S        ++ +L  +GE   D GGYFIIN
Sbjct: 101 ----ENNIEGDPTEVHIGDIPIMLKSIADPTSEFSQDKLVEIGEDPKDPGGYFIIN 152

[224][TOP]
>UniRef100_Q1L5B2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eschscholzia
           californica RepID=Q1L5B2_ESCCA
          Length = 951

 Score =  102 bits (254), Expect = 2e-20
 Identities = 52/91 (57%), Positives = 64/91 (70%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E+ TL+P  ARLRNLTYS PLY DVTK  ++       EE A +++  KVFIGRVP+MLR
Sbjct: 1   ESATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVAETQDFTKVFIGRVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89

[225][TOP]
>UniRef100_Q1L6E0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coriaria sarmentosa
           RepID=Q1L6E0_9ROSI
          Length = 952

 Score =  102 bits (253), Expect = 2e-20
 Identities = 51/91 (56%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++      GEE   +++  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L   +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLFQNSEKDLTELGECPYDQGGYFIIN 89

[226][TOP]
>UniRef100_Q1L5A9 RNA polymerase II second largest subunit (Fragment) n=1
           Tax=Liquidambar acalycina RepID=Q1L5A9_9MAGN
          Length = 453

 Score =  102 bits (253), Expect = 2e-20
 Identities = 51/91 (56%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++      GEE   +++  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L   +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLFQNSEKDLTELGECPYDQGGYFIIN 89

[227][TOP]
>UniRef100_Q07DU9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays
           RepID=Q07DU9_MAIZE
          Length = 1170

 Score =  101 bits (252), Expect = 3e-20
 Identities = 61/180 (33%), Positives = 95/180 (52%), Gaps = 12/180 (6%)
 Frame = +1

Query: 37  EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++++  E  Y P +         +
Sbjct: 34  EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGGWKHAI 91

Query: 217 IKFGQLRVSKPNFTENNGEAGTLY-PNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEE 393
           IKFG++++ KP F     E    + P  ARL+N+TY++ L   + + T+++   E  ++ 
Sbjct: 92  IKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRL---IVEVTIQVYSLEKSDKS 148

Query: 394 ATS-----------EEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
            T             E   +FIG +PVM++S  CLLH+LNE       EC  D GGYF++
Sbjct: 149 KTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNE------SECLFDAGGYFLV 202

[228][TOP]
>UniRef100_Q1DPF0 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
           RepID=Q1DPF0_COCIM
          Length = 1152

 Score =  101 bits (252), Expect = 3e-20
 Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 31/173 (17%)
 Frame = +1

Query: 118 MQRLVDESPDIVLIPEDQYVPGRDAPDENT--KVVIKFGQLRVSKPNFTENNGEAGTLYP 291
           MQ LV+E   + L  +    P  D PD     +  +KFG + +++P+ TE +G    + P
Sbjct: 1   MQELVEEQGQVTL--DQTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLP 58

Query: 292 NQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEP-------------------- 411
            +ARLRNLTY++PLY  +TK      +    E +   +EP                    
Sbjct: 59  QEARLRNLTYASPLYLGITKKIAEGRERSLAERDEDDDEPDAKGDEERRARGTYLQWEPK 118

Query: 412 ---------EKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                    E +FIG++P+ML+S++C+L +L E  L +  EC  D GGYFIIN
Sbjct: 119 ALPEDEADEENIFIGKMPIMLKSKYCILKDLGEHALYNWNECPYDSGGYFIIN 171

[229][TOP]
>UniRef100_Q1L6D7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dicentra formosa
           RepID=Q1L6D7_9MAGN
          Length = 873

 Score =  101 bits (251), Expect = 4e-20
 Identities = 51/91 (56%), Positives = 63/91 (69%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++       EE   ++E +KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFKKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89

[230][TOP]
>UniRef100_Q9UV93 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichophyton rubrum
           RepID=Q9UV93_TRIRU
          Length = 1109

 Score =  101 bits (251), Expect = 4e-20
 Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 34/175 (19%)
 Frame = +1

Query: 121 QRLVDESPDIVLIPEDQYVPGRDAPDENTKVVI-----KFGQLRVSKPNFTENNGEAGTL 285
           Q LV+E   + L   DQ VP  D  DE   VV+     KFG + +++P+ TE +G    +
Sbjct: 1   QELVEEQGQVTL---DQTVPPSD--DEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIM 55

Query: 286 YPNQARLRNLTYSTPLYCDVTKTTV----RLVDPETGEEEATSE---------------- 405
            P +ARLRNLTY++PLY  ++K  +    RL+     EEE   E                
Sbjct: 56  LPQEARLRNLTYASPLYLGISKKIMEGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWE 115

Query: 406 ---------EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                    E E +FIG++P+ML+S++C+L +L E  L +  EC  D GGYF+IN
Sbjct: 116 RKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLGEQALYNWNECPYDSGGYFVIN 170

[231][TOP]
>UniRef100_Q1L6D2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Euptelea polyandra
           RepID=Q1L6D2_9MAGN
          Length = 874

 Score =  100 bits (249), Expect = 7e-20
 Identities = 51/91 (56%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++       EE   ++E  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89

[232][TOP]
>UniRef100_Q1L5B6 RNA polymerase II second largest subunit (Fragment) n=1
           Tax=Camellia japonica RepID=Q1L5B6_9ERIC
          Length = 431

 Score =  100 bits (249), Expect = 7e-20
 Identities = 51/91 (56%), Positives = 63/91 (69%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  +L+P  ARLRNLTYS+PLY DVTK  V+       EE   ++E  KVFIG+VP+MLR
Sbjct: 1   ETASLFPKAARLRNLTYSSPLYVDVTKRVVKR--GHDCEEVTETQEFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCCLYQTSEKDLTELGECPFDQGGYFIIN 89

[233][TOP]
>UniRef100_Q1L5B3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Astilbe sp.
           Yoshikawa s.n. RepID=Q1L5B3_9MAGN
          Length = 951

 Score =  100 bits (249), Expect = 7e-20
 Identities = 50/91 (54%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DV+K  ++      GEE   +++  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVSKRVIK--KGHDGEEVTETQDFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L   +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLFQNSEKDLTELGECPYDQGGYFIIN 89

[234][TOP]
>UniRef100_B8MJE1 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC
           10500 RepID=B8MJE1_TALSN
          Length = 1212

 Score =  100 bits (249), Expect = 7e-20
 Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 4/179 (2%)
 Frame = +1

Query: 19  SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198
           +A D W ++ A+    GLV+Q + SYN F+ V ++++V+ S  I               D
Sbjct: 87  TARDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVEASSTIY-------------SD 133

Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEA----GTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
            ++   +KF  + V  P  ++   ++     T+ PN+ RLR++TY+ P++ D T      
Sbjct: 134 ADSHFFLKFTDIYVGSPRRSDEPKDSVESDSTVTPNECRLRDMTYAAPIFVDFTY----- 188

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              + G++  T     +V IGR+P+MLRS  C+L N    EL+ L EC +D GGYFI+N
Sbjct: 189 ---KRGKDNVTQR---RVPIGRMPIMLRSSKCVLSNKKPNELHLLNECPLDPGGYFIVN 241

[235][TOP]
>UniRef100_Q1L5A8 RNA polymerase II second largest subunit (Fragment) n=1
           Tax=Nymphaea colorata RepID=Q1L5A8_9MAGN
          Length = 431

 Score =  100 bits (248), Expect = 9e-20
 Identities = 50/91 (54%), Positives = 61/91 (67%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++       EE    ++  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDSEELVEKQDFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89

[236][TOP]
>UniRef100_C5Y8Y9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
           RepID=C5Y8Y9_SORBI
          Length = 1239

 Score =  100 bits (248), Expect = 9e-20
 Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 9/177 (5%)
 Frame = +1

Query: 37  EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++++  E  Y P +         +
Sbjct: 103 EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGGWKHAI 160

Query: 217 IKFGQLRVSKPNFTENNGEAGTLY-PNQARLRNLTYSTPLYCDVTKTTVRLVDPE---TG 384
           IKFG++++ KP F     E    + P  ARL+N+TY++ L  +VT     L   +   TG
Sbjct: 161 IKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLKVEVTIQVYSLEKSDKSKTG 220

Query: 385 EEEATSE-----EPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
            E    +     E   +FIG +PVM++S  CLLH+L E       EC  D GGYF++
Sbjct: 221 NEGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKE------SECLFDAGGYFLV 271

[237][TOP]
>UniRef100_B6QHR9 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC
           18224 RepID=B6QHR9_PENMQ
          Length = 1212

 Score =  100 bits (248), Expect = 9e-20
 Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 4/179 (2%)
 Frame = +1

Query: 19  SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198
           +A D W ++ A+    GLV+Q + SYN F+ V ++++V+ S  I               D
Sbjct: 87  TARDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVEASSTIY-------------SD 133

Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEA----GTLYPNQARLRNLTYSTPLYCDVTKTTVRL 366
            ++   +KF  + V  P  ++   ++     T+ PN+ RLR++TY+ P++ D T      
Sbjct: 134 ADSAFFLKFTDIYVGSPRRSDEPKDSVESDSTVTPNECRLRDMTYAAPIFVDFTY----- 188

Query: 367 VDPETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              + G+++ T     +V IGR+P+MLRS  C+L N    E++ L EC +D GGYFI+N
Sbjct: 189 ---KRGKDKVTQR---RVPIGRMPIMLRSSKCVLSNKKPNEMHLLNECPLDPGGYFIVN 241

[238][TOP]
>UniRef100_Q1L6E5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Callistemon
           subulatus RepID=Q1L6E5_9MYRT
          Length = 952

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 49/91 (53%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DV+   ++      GEE    ++ +KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVSMRVIK--KGHDGEELTEPQDLQKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89

[239][TOP]
>UniRef100_B4FHF6 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FHF6_MAIZE
          Length = 267

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 12/180 (6%)
 Frame = +1

Query: 37  EVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPDENTKVV 216
           E   ++FDE GL+  Q+ SYNEFVS  +Q L D   ++++  E  Y P +         +
Sbjct: 93  EASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIV--EPGYDPSKKGSGSWKHAI 150

Query: 217 IKFGQLRVSKPNFTENNGEAGTLY-PNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEE 393
           IKFG++++ KP F     E    + P  ARL+N+TY++ L  +V   T+++   E  ++ 
Sbjct: 151 IKFGRVKLEKPVFWTGKDEVSVDFKPWHARLQNMTYASRLRVEV---TIQVYSLEKSDKS 207

Query: 394 ATS-----------EEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
            T             E   +FIG +PVM++S  CLLH+L E       EC  D GGYF++
Sbjct: 208 KTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKE------SECLFDAGGYFLV 261

[240][TOP]
>UniRef100_Q6CEE6 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
           RepID=Q6CEE6_YARLI
          Length = 1169

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 53/176 (30%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
 Frame = +1

Query: 19  SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198
           +AED W ++ A+    GLV+Q L S+N FV V +++++  +  ++              D
Sbjct: 44  TAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKILAANQMVL-------------SD 90

Query: 199 ENTKVVIKFGQLRVSKPNFT-ENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDP 375
            + +  +K+  +RV KP    ++  +   ++P++ RLR++TY+ P+Y D+  T  R +  
Sbjct: 91  VDPEFYLKYKDIRVGKPGIKFDDKNDDNAIFPHECRLRDMTYAAPIYVDIEYTKERKIVI 150

Query: 376 ETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           +   E           IG++P+MLRS  C L +  E ++ ++GEC +D GGYFI+N
Sbjct: 151 QRNLE-----------IGKMPIMLRSSKCHLQDQTEEKMAAMGECPLDPGGYFIVN 195

[241][TOP]
>UniRef100_Q5KC33 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
           RepID=Q5KC33_CRYNE
          Length = 1129

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 60/174 (34%), Positives = 91/174 (52%)
 Frame = +1

Query: 19  SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198
           + ED W+++ A+    GLV+Q L S+N FV+V ++ ++  +  ++              D
Sbjct: 20  TVEDKWQLLPAFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVI-------------SD 66

Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPE 378
            N K  I++  +RV +P   + N  A  L P + RL + TYS P+Y DV           
Sbjct: 67  INPKYYIRYTDIRVGRPARHDANQVASALSPMECRLTDSTYSAPIYVDVEYM-------- 118

Query: 379 TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFII 540
            GEE+ + +    V IG +PVMLRS  C L   NE EL  +GEC +D GGYF++
Sbjct: 119 -GEEKRSKQRG--VQIGMLPVMLRSDLCNLKGKNEAELARMGECPMDPGGYFVV 169

[242][TOP]
>UniRef100_Q1L6E4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chimonanthus praecox
           RepID=Q1L6E4_9MAGN
          Length = 906

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 50/91 (54%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++       EE   ++E  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C ++  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTVYQNSEKDLTELGECPYDQGGYFIIN 89

[243][TOP]
>UniRef100_Q1L6D6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dillenia
           suffruticosa RepID=Q1L6D6_9MAGN
          Length = 868

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 50/91 (54%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++       EE   +++  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQDFAKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C L+  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTLYQNSEKDLTELGECPYDQGGYFIIN 89

[244][TOP]
>UniRef100_Q1L6C9 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Gunnera
           chilensis RepID=Q1L6C9_GUNCH
          Length = 453

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 49/91 (53%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++       EE   +++  KVFIG+VP+ML+
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIKR--GHDCEELTETQDFTKVFIGKVPIMLK 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C +H   E +L  LGEC +DQGGYFIIN
Sbjct: 59  SSYCTVHQNTEKDLTELGECPLDQGGYFIIN 89

[245][TOP]
>UniRef100_Q1L6A5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetracentron sinense
           RepID=Q1L6A5_9MAGN
          Length = 951

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 50/91 (54%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++       EE   ++E  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRIIK--KGHDCEEVTETQEFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C ++  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTVYQNSEKDLTELGECPYDQGGYFIIN 89

[246][TOP]
>UniRef100_Q976A4 DNA-directed RNA polymerase n=1 Tax=Sulfolobus tokodaii
           RepID=Q976A4_SULTO
          Length = 1126

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 1/177 (0%)
 Frame = +1

Query: 16  ISAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAP 195
           ++  + WE++ ++F   GLVRQ L S+N+F+   +Q+++DE  +I+       +PG    
Sbjct: 3   LTVNERWEIVKSFFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEII-----TEIPG---- 53

Query: 196 DENTKVVIKFGQLRVSKPNFTE-NNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVD 372
                + IK G++R  +P   E + G    L P +ARLRNLTY+ PLY  +         
Sbjct: 54  -----LKIKLGKIRYDRPGIRETDKGPPKELTPLEARLRNLTYAVPLYLTMIPI------ 102

Query: 373 PETGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
                E     EP +V+IG +P+ML+S      N+   EL  +GE   D GGYFI+N
Sbjct: 103 -----ENNIEGEPIEVYIGDLPIMLKSIADPTSNMTYDELIKIGEDPKDPGGYFIVN 154

[247][TOP]
>UniRef100_C5M3E6 DNA-directed RNA polymerase n=1 Tax=Candida tropicalis MYA-3404
           RepID=C5M3E6_CANTT
          Length = 1159

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 58/175 (33%), Positives = 94/175 (53%)
 Frame = +1

Query: 19  SAEDAWEVINAYFDEHGLVRQQLQSYNEFVSVTMQRLVDESPDIVLIPEDQYVPGRDAPD 198
           +AED W ++ A+    GLV+Q L SYN FV V +++++ ++ ++VL             D
Sbjct: 38  TAEDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKII-KANELVL------------SD 84

Query: 199 ENTKVVIKFGQLRVSKPNFTENNGEAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPE 378
            + +  +K+  +RV   +  +   +   L P++ RLR+LTYS P+Y DV  T  R +   
Sbjct: 85  VDPEFYVKYLDIRVGHKSTAKPGVKEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIRH 144

Query: 379 TGEEEATSEEPEKVFIGRVPVMLRSRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
              E           IGR+PVMLRS  C+L  ++E  +  + EC +D GGYF++N
Sbjct: 145 NDLE-----------IGRMPVMLRSNKCMLEGMSEASMAQVEECPLDPGGYFVVN 188

[248][TOP]
>UniRef100_Q1L6F0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aextoxicon punctatum
           RepID=Q1L6F0_9MAGN
          Length = 873

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 49/91 (53%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++       EE   +++  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDCEEVTETQDFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C ++  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTVYQNSEKDLTELGECPFDQGGYFIIN 89

[249][TOP]
>UniRef100_Q1L6E1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cissus tuberosa
           RepID=Q1L6E1_9MAGN
          Length = 951

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 50/91 (54%), Positives = 63/91 (69%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY +VTK  +R       EE   ++E  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVNVTKRIIR--KGHDLEEVTETQEFTKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C +++ +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTVYHNSEKDLTELGECPYDQGGYFIIN 89

[250][TOP]
>UniRef100_Q1L6D4 RNA polymerase II second largest subunit (Fragment) n=1
           Tax=Embothrium coccineum RepID=Q1L6D4_EMBCO
          Length = 706

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 49/91 (53%), Positives = 62/91 (68%)
 Frame = +1

Query: 271 EAGTLYPNQARLRNLTYSTPLYCDVTKTTVRLVDPETGEEEATSEEPEKVFIGRVPVMLR 450
           E  TL+P  ARLRNLTYS PLY DVTK  ++       EE   +++  KVFIG+VP+MLR
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIK--KGHDCEEVTETQDFAKVFIGKVPIMLR 58

Query: 451 SRFCLLHNLNEFELNSLGECHVDQGGYFIIN 543
           S +C ++  +E +L  LGEC  DQGGYFIIN
Sbjct: 59  SSYCTVYQNSEKDLTELGECPFDQGGYFIIN 89