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[1][TOP] >UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis RepID=O04142_PORYE Length = 1685 Score = 251 bits (641), Expect = 2e-65 Identities = 143/186 (76%), Positives = 148/186 (79%), Gaps = 6/186 (3%) Frame = +3 Query: 3 YHLTEPDLHLQESSNSPYLSQAALNDIHSG----GDVTELL--AKEWAQLKKDRDFLRHE 164 YHLTEPDLHLQ L G G V++ + A+E +L R F Sbjct: 827 YHLTEPDLHLQGVVQFSVLVAGGSQRYPLGRRRRGAVSQGVGTAEEGPRLPTPRGF---- 882 Query: 165 VFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDED 344 KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVR VELLLHRTRVLTSDED Sbjct: 883 --KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 940 Query: 345 AEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLT 524 AEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLT Sbjct: 941 AEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLT 1000 Query: 525 RKAFTW 542 RKAFTW Sbjct: 1001 RKAFTW 1006 [2][TOP] >UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata RepID=Q9AXN0_9RHOD Length = 1746 Score = 125 bits (314), Expect = 2e-27 Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 14/192 (7%) Frame = +3 Query: 3 YHLTEPDLHLQESSNS-PYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179 +HL DL N YL+Q ++D+ + + + L E+AQ+K DRD L+ E+ ++ Sbjct: 885 FHLDPFDLDFGIGENRRSYLAQEVIDDVRNDPQLIKALEDEFAQIKLDRDRLQREIIRSR 944 Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLT--------- 332 E+K PLAVNI+RLIWN K +F++RQ+ SDL+P I++ V++LL R V+ Sbjct: 945 ESKWPLAVNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGVQILLSRCNVVALPPKSIKLL 1004 Query: 333 ----SDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKV 500 D+ AEVD + ++L+ AQ NATLL+ +H+RA LASKV Sbjct: 1005 DEGDGDQVAEVDT----------------NSVSRQLAVEAQENATLLWSIHIRAFLASKV 1048 Query: 501 VLSEHRLTRKAF 536 +L E+RL +KAF Sbjct: 1049 ILKEYRLDKKAF 1060 [3][TOP] >UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera RepID=O09451_9FLOR Length = 1732 Score = 124 bits (312), Expect = 3e-27 Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 3/173 (1%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 Q+ PYL + + + L E+ Q++ DR LR + KTGE+K PLAVN++ Sbjct: 820 QDEKGRPYLDPNIVERVRQDAALHVELRLEFQQIEADRKLLRDYIIKTGESKRPLAVNVD 879 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 R+IWNAK+ ++ + SDL P ++++ V +LL RTRVL ++A ++ A E + Sbjct: 880 RVIWNAKQEHNIHADSVSDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPGMEEDD 939 Query: 393 ASGPQDE---ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 P DE + L + AQ NATLLFQ+H+R+ LA K ++ HRLT KAF W Sbjct: 940 EGNPIDEKPTMVDPLMKEAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLW 992 [4][TOP] >UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia uvarioides RepID=Q9AXN1_9FLOR Length = 1712 Score = 119 bits (299), Expect = 1e-25 Identities = 66/181 (36%), Positives = 106/181 (58%), Gaps = 1/181 (0%) Frame = +3 Query: 3 YHLTEPDLHL-QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179 Y+L D ++S PYL + I LL E+ ++++DRD LR+ + K+G Sbjct: 810 YYLDPTDAKFGKDSRGRPYLDWETCDSIRQDAQAHILLRNEFQRIREDRDLLRNFIAKSG 869 Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359 EAK P+AVNI+R+IWNAK+ ++R + SDL+P ++ + +++LL RTRV+ +D + + Sbjct: 870 EAKRPMAVNIDRIIWNAKQAHNIRPDSVSDLTPVQVWKGIKMLLKRTRVVEIGDDQDDED 929 Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539 + + +G + A L+ Q NAT++FQ+HVR+ LA K V+ HRL AF Sbjct: 930 VDDGVTDENGEMIDRKPVA-DPLTLETQENATMIFQIHVRSMLACKQVMVRHRLDINAFL 988 Query: 540 W 542 W Sbjct: 989 W 989 [5][TOP] >UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei RepID=B4YT42_AMPLE Length = 562 Score = 102 bits (254), Expect = 2e-20 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL ++ L + GDV L +EW QL KDR+ LR ++F TGE+K+ L Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLSKDREALR-QIFPTGESKVVLPC 443 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + ++ D+ Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD-------------- 489 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 490 -------------RLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529 [6][TOP] >UniRef100_B4YT35 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tenomerga cinerea RepID=B4YT35_9COLE Length = 553 Score = 102 bits (253), Expect = 2e-20 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL ++ L + GDV L +EW QL KDR+ LR ++F TGE+K+ L Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLTKDREALR-QIFPTGESKVVLPC 443 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + ++ D+ Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD-------------- 489 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 490 -------------RLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529 [7][TOP] >UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019270E9 Length = 2014 Score = 101 bits (251), Expect = 4e-20 Identities = 57/162 (35%), Positives = 91/162 (56%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L++ L +I+S T + +E+ QLK DR+ LR+ +F G K+ L V + RLIWN+++ Sbjct: 934 LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 +F V ++DLSP K++ ++ L R V+ ++ Sbjct: 993 MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGED------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF W Sbjct: 1028 --KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDW 1067 [8][TOP] >UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 1 n=1 Tax=Hydra magnipapillata RepID=UPI00019270BB Length = 2041 Score = 101 bits (251), Expect = 4e-20 Identities = 57/162 (35%), Positives = 91/162 (56%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L++ L +I+S T + +E+ QLK DR+ LR+ +F G K+ L V + RLIWN+++ Sbjct: 935 LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 993 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 +F V ++DLSP K++ ++ L R V+ ++ Sbjct: 994 MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGED------------------------- 1028 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF W Sbjct: 1029 --KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDW 1068 [9][TOP] >UniRef100_O02475 DNA-directed RNA polymerase (Fragment) n=1 Tax=Triops longicaudatus RepID=O02475_9CRUS Length = 543 Score = 100 bits (250), Expect = 5e-20 Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL S+ D+ + G+V L EW QL +DRD LR ++F TGE K+ L Sbjct: 383 DPSNERYLRRIFSEDVTRDLMTSGEVISELDAEWEQLSRDRDALR-QIFPTGENKVVLPC 441 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++V+ V LL + V+ ++ Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLSPVRVVQGVRDLLEKCVVVKGED-------------- 487 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +LS+ A +NATLLFQ VR++L +K V E+RL+ +AF W Sbjct: 488 -------------KLSKQANMNATLLFQCLVRSTLCTKRVAEEYRLSSEAFEW 527 [10][TOP] >UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D5670C Length = 2007 Score = 98.6 bits (244), Expect = 3e-19 Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL ++ + D+ G+V L EW QL+KDR+ LR ++F +GE+K+ L Sbjct: 919 DPSNERYLRRVFTEEVIKDLMGSGEVISELETEWEQLQKDREALR-QIFPSGESKVVLPC 977 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL++ V+ + ED Sbjct: 978 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLNKC-VIVAGED------------- 1023 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VR++L +K V E RL+ +AF W Sbjct: 1024 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEW 1063 [11][TOP] >UniRef100_O02459 DNA-directed RNA polymerase (Fragment) n=1 Tax=Periplaneta americana RepID=O02459_PERAM Length = 468 Score = 98.6 bits (244), Expect = 3e-19 Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + +N YL ++ L ++ GDV L KEW QL KDR+ LR ++F +GE+K+ L Sbjct: 308 DPTNERYLRRIFNEDILKELMGSGDVISELEKEWEQLVKDREALR-QIFPSGESKVVLPC 366 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + ++ D+ Sbjct: 367 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVSDLLKKCIIVAGDD-------------- 412 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VR++L +K V E RL+ +AF W Sbjct: 413 -------------HLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEW 452 [12][TOP] >UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae RepID=Q84KP6_CYAME Length = 1819 Score = 98.2 bits (243), Expect = 3e-19 Identities = 63/163 (38%), Positives = 85/163 (52%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 Y+ ++ + + +V L +E+ QL DR+ L VF TGEAK PL VN++RLI N + Sbjct: 924 YIEPDLIDAVRTDPEVALELEEEYQQLLADREQLC-AVFPTGEAKWPLMVNVQRLIQNCR 982 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 IF ++ + SDL P +I++ V +LL R V+ D+ Sbjct: 983 SIFGIQHDTLSDLHPRQIIQGVRVLLQRCVVVPGDD------------------------ 1018 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 ELS AQ NA LLF HVRA LA+K VL HRL KAF W Sbjct: 1019 ---ELSREAQRNAVLLFAAHVRAELATKRVLQIHRLNSKAFAW 1058 [13][TOP] >UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense RepID=B4YT44_9CARA Length = 562 Score = 98.2 bits (243), Expect = 3e-19 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL ++ + + GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 385 DPSNERYLRRIFNEEIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 490 -------------RLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529 [14][TOP] >UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179348F Length = 1862 Score = 97.8 bits (242), Expect = 4e-19 Identities = 59/161 (36%), Positives = 87/161 (54%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ L D+ D L KEW QL DRD LR E+F +GE+K+ L N++R+IWN ++I Sbjct: 928 TEDVLKDMMGSNDTVAELEKEWEQLTNDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F + + +DL+P K+V V+ LL + V+ + ED Sbjct: 987 FHINKRGPTDLNPIKVVNGVKKLLDKC-VIVAGED------------------------- 1020 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 ELS+ A NATLLFQ VR++L +K+V RL+ +AF W Sbjct: 1021 -ELSKKANKNATLLFQCLVRSTLCTKLVSENFRLSSEAFEW 1060 [15][TOP] >UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus complex RepID=B4YT54_9CARA Length = 473 Score = 97.8 bits (242), Expect = 4e-19 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 296 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 354 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 355 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 400 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 401 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 440 [16][TOP] >UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion mandibulare RepID=B4YT49_9CARA Length = 562 Score = 97.8 bits (242), Expect = 4e-19 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529 [17][TOP] >UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion RepID=B4YT46_9CARA Length = 562 Score = 97.8 bits (242), Expect = 4e-19 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529 [18][TOP] >UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii RepID=B4YT45_9CARA Length = 227 Score = 97.8 bits (242), Expect = 4e-19 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKYVSEEFRLSTEAFEW 194 [19][TOP] >UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus RepID=B3FA71_9CARA Length = 227 Score = 97.8 bits (242), Expect = 4e-19 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194 [20][TOP] >UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion coxendix RepID=B3FA50_9CARA Length = 225 Score = 97.8 bits (242), Expect = 4e-19 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 48 DPSNERYLRRIFNEDIIKQLMGSGDVXSELEREWEQLSRDREALR-QIFPSGESKVVLPC 106 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 107 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 152 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 153 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 192 [21][TOP] >UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion RepID=B3FA43_9CARA Length = 227 Score = 97.8 bits (242), Expect = 4e-19 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194 [22][TOP] >UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus RepID=B4YT40_9COLE Length = 562 Score = 97.4 bits (241), Expect = 6e-19 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI DV L +EW QL KDR+ LR ++F +GE+K+ L Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSADVISELEREWEQLVKDRETLR-QIFPSGESKVVLPC 443 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + ++DLSP ++++ V LL + ++ D+ Sbjct: 444 NLQRMIWNVQKIFHINKRAQTDLSPLRVIQGVRDLLQKCVIVAGDD-------------- 489 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529 [23][TOP] >UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium replicatum RepID=Q2PYS3_9FUNG Length = 981 Score = 97.4 bits (241), Expect = 6e-19 Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 1/158 (0%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRIFDV 248 + D+ +V ELL E+ QL +DR LR E+F + LPL VN++R+IW A+++FD Sbjct: 825 VKDVMESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRVIWKAQKLFDR 884 Query: 249 RQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKEL 428 R+ +SDL P I++ V+ LL RT V+ + EL Sbjct: 885 RK--QSDLHPRHIIKSVQELLERTVVIRGKD---------------------------EL 915 Query: 429 SETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 S AQ NATLLFQ+ VR++LA++ VL E RL R+AF W Sbjct: 916 SVEAQANATLLFQILVRSTLATRRVLEEFRLDRRAFDW 953 [24][TOP] >UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E Length = 1422 Score = 97.1 bits (240), Expect = 7e-19 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + +N YL + DI G+V L +EW QL KDR LR E+F +GE+K+ L Sbjct: 915 DPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAVLR-EIFPSGESKVVLPC 973 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP K+++ V+ LL + ++ D+ Sbjct: 974 NLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDD-------------- 1019 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VR++L +K V E RL+ +AF W Sbjct: 1020 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEW 1059 [25][TOP] >UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus melanarius RepID=B4YT39_PTEME Length = 227 Score = 97.1 bits (240), Expect = 7e-19 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLTRDREALR-QIFPSGESKVVLPC 108 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLKKC-VIVAGED------------- 154 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 155 -------------RLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194 [26][TOP] >UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi RepID=B4YT37_9CARA Length = 369 Score = 97.1 bits (240), Expect = 7e-19 Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 192 DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 250 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + ++ + Sbjct: 251 NLQRMIWNVQKIFHINKRAPTDLSPIRVIQGVRDLLQKCVIVAGKD-------------- 296 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LSE A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 297 -------------RLSEQANENATLLFQCLVRATLCTKCVSEEFRLSSEAFEW 336 [27][TOP] >UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus opacus RepID=B4YT36_9COLE Length = 629 Score = 97.1 bits (240), Expect = 7e-19 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIH----SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + D+ G+V L +EW QL+KDR+ LR ++F +GE+K+ L Sbjct: 452 DPSNERYLRRIFNEDVSRQLMGSGEVISELEREWEQLQKDREALR-QIFPSGESKVVLPC 510 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + ++ D+ Sbjct: 511 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLKKCIIVAGDD-------------- 556 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VR++L +K V E RL+ +AF W Sbjct: 557 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEW 596 [28][TOP] >UniRef100_Q9NJJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tomocerus sp. jcrjws1 RepID=Q9NJJ2_9HEXA Length = 543 Score = 96.3 bits (238), Expect = 1e-18 Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + +N YL ++ + DI G+V + KEW L+KDR LR ++F TGE K+ L Sbjct: 383 DPTNERYLRRVFTEDVMRDIMGSGEVISAIEKEWEALQKDRAVLR-QIFPTGENKVVLPC 441 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DL+P +++ VE LL + ++ ++ Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLNPVRVIEGVEDLLKKCVIVVGED-------------- 487 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VR++L +K V E RL+ +AF W Sbjct: 488 -------------RLSKQANANATLLFQCLVRSTLCTKRVAEEFRLSSEAFEW 527 [29][TOP] >UniRef100_B4YT41 DNA-directed RNA polymerase (Fragment) n=1 Tax=Macrogyrus oblongus RepID=B4YT41_9COLE Length = 554 Score = 96.3 bits (238), Expect = 1e-18 Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L EW QL++DR+ LR ++F GE+K+ L Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSGDVISELELEWEQLRRDREALR-QIFPNGESKVVLPC 443 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL R V+ + ED Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRC-VIVAGED------------- 489 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VR++L +K V E RL+ +AF W Sbjct: 490 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEW 529 [30][TOP] >UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion levettei RepID=B3FA52_9CARA Length = 226 Score = 95.9 bits (237), Expect = 2e-18 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 49 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 107 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 108 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 153 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 154 -------------RLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 193 [31][TOP] >UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion bifossulatum RepID=B3FA46_9CARA Length = 227 Score = 95.9 bits (237), Expect = 2e-18 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 155 -------------RLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194 [32][TOP] >UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186D846 Length = 1885 Score = 95.5 bits (236), Expect = 2e-18 Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 +++N YL ++ L ++ G+V L KEW QL+KDR+ LR ++F +GE K+ L Sbjct: 908 DATNERYLRRIFNENILKELMGSGEVISYLEKEWDQLQKDREALR-QIFPSGENKVVLPC 966 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP +++ V LL + V+ + ED Sbjct: 967 NLQRMIWNVQKIFHINKRAPTDLSPLRVIEGVRDLLQKC-VIVAGED------------- 1012 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VR++L +K V + RL+ +AF W Sbjct: 1013 -------------HLSKQANENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEW 1052 [33][TOP] >UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa RepID=Q30BD8_CYAPA Length = 1000 Score = 95.5 bits (236), Expect = 2e-18 Identities = 59/163 (36%), Positives = 86/163 (52%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 +L +I + L KE+ QL KDR+ LR E+ ++GE + L VN++RLIWNA+ Sbjct: 830 FLDPDVAAEIRGSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQ 889 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +I+ V + SDL P I++ VELL + V+ ++ Sbjct: 890 KIYKVDTSKPSDLRPDIILQGVELLSTQLVVIAGED------------------------ 925 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NAT LF +H+RA+LA+K VLSE+RL+ A W Sbjct: 926 ---TLSREAQENATRLFNIHLRATLATKRVLSEYRLSAAALEW 965 [34][TOP] >UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus RepID=B4YT48_9CARA Length = 562 Score = 95.5 bits (236), Expect = 2e-18 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI DV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSSDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529 [35][TOP] >UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium subgenus complex RepID=B3FA44_9CARA Length = 227 Score = 95.5 bits (236), Expect = 2e-18 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L + W QL +DR+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRDREALR-QIFPSGESKVVLPC 108 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194 [36][TOP] >UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion balli RepID=B3FA45_9CARA Length = 220 Score = 95.1 bits (235), Expect = 3e-18 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L +EW QL +DR+ LR ++F +GE+K+ L Sbjct: 43 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 101 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 102 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 147 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +A W Sbjct: 148 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAXEW 187 [37][TOP] >UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis RepID=Q4P7Q0_USTMA Length = 1774 Score = 95.1 bits (235), Expect = 3e-18 Identities = 55/170 (32%), Positives = 95/170 (55%), Gaps = 15/170 (8%) Frame = +3 Query: 78 DIHSGG---------------DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 D+H GG ++ +LL +E+AQL+ DR+ LRHE+F++ + ++ L +N+ Sbjct: 914 DLHDGGFKKGTLRPGLGDWSQELQDLLDEEFAQLEFDRNLLRHEIFQSDQVQVRLPMNVA 973 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RL+ NA++IF V +DLSP++++ + +L R V+ D D I+RE Sbjct: 974 RLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE------- 1021 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ+NATLLF++H+R+ L SK+V+ +H + ++A+ W Sbjct: 1022 ---------------AQMNATLLFKIHLRSYLCSKMVIEQHHINKEAWEW 1056 [38][TOP] >UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U396_PHYPA Length = 1742 Score = 94.7 bits (234), Expect = 4e-18 Identities = 59/163 (36%), Positives = 87/163 (53%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 Y+S A DI + ++ + E ++L+ DR + E+ TGE+ PL VN++RLIWNA+ Sbjct: 931 YMSAEAAEDIKTIQEIRNVFDAEVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQ 990 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF V SD+ P +IV VE L R RV+ ++ Sbjct: 991 KIFKVDLRKSSDMHPMEIVEAVENLQERLRVVPGND------------------------ 1026 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 ++S AQ NATL F +R++LASK VL ++RLTR+AF W Sbjct: 1027 ---QISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFEW 1066 [39][TOP] >UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus RepID=B4YT43_9DYTI Length = 562 Score = 94.7 bits (234), Expect = 4e-18 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 ++SN YL + D+ GDV L EW QL+KDR+ LR ++F +GE+ + L Sbjct: 385 DASNEKYLRRVFNEDVIKLMMGSGDVISELELEWDQLQKDREALR-QIFPSGESNVVLPC 443 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL R ++ + Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCIIVAGTD-------------- 489 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS A NATLLFQ VR++L +K V E+RL+ +AF W Sbjct: 490 -------------RLSTLANDNATLLFQCLVRSTLCTKYVSEEYRLSTEAFEW 529 [40][TOP] >UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion californicum RepID=B3FA42_9CARA Length = 227 Score = 94.7 bits (234), Expect = 4e-18 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + DI GDV L + W QL ++R+ LR ++F +GE+K+ L Sbjct: 50 DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRBREALR-QIFPSGESKVVLPC 108 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP ++++ V LL + V+ + ED Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VRA+L +K V E RL+ +AF W Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194 [41][TOP] >UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium discoideum RepID=RPB1_DICDI Length = 1727 Score = 94.7 bits (234), Expect = 4e-18 Identities = 53/163 (32%), Positives = 86/163 (52%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 ++ + + + + L KE+ ++K DR LR+E+ +GEA PL VN+ RLI NA+ Sbjct: 919 WMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQ 978 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 ++F++ SDL+P+ +V +E L+ R +++ + + E DE Sbjct: 979 KLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTE------------------DDE 1020 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 NAT+LF + VR++ ASK VL+E RLT KAF W Sbjct: 1021 NFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLW 1063 [42][TOP] >UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Acyrthosiphon pisum RepID=UPI000179338A Length = 1862 Score = 94.4 bits (233), Expect = 5e-18 Identities = 54/161 (33%), Positives = 86/161 (53%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ L D+ D L +EW QL DRD LR E+F +GE+K+ L N++R+IWN ++I Sbjct: 928 NEDVLKDLTGSNDSVTELEREWEQLTTDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F + + ++DL+P K++ V+ LL + ++ + Sbjct: 987 FHINKRGQTDLNPVKVINGVKELLDKCVIVAGGD-------------------------- 1020 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 ELS+ A NATLLFQ VR++L +K+V RL+ +AF W Sbjct: 1021 -ELSKKANHNATLLFQCLVRSTLCTKLVSERFRLSSEAFEW 1060 [43][TOP] >UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri RepID=Q9U5F6_EPTBU Length = 595 Score = 94.4 bits (233), Expect = 5e-18 Identities = 51/162 (31%), Positives = 87/162 (53%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + ++++ S + L +E+ Q++ DR+ LR VF TG++K+ L N++R+IWNA++ Sbjct: 433 LHEDVVSEVMSSAHIQNCLEREFEQIRDDREVLR-AVFPTGDSKVVLPCNLQRMIWNAQK 491 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + +DL+P ++V V L + +++ D+ Sbjct: 492 IFHINTRSSTDLNPLRVVEGVNDLTQKLQIVKGDD------------------------- 526 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S AQ NATLLF HVRA+L ++ + EHRL+ +AF W Sbjct: 527 --PISRQAQQNATLLFNCHVRATLCTRRLAEEHRLSSEAFEW 566 [44][TOP] >UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica RepID=A9QMT2_9PELO Length = 488 Score = 94.4 bits (233), Expect = 5e-18 Identities = 52/169 (30%), Positives = 90/169 (53%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E + + Y ++ + ++ + + + KEWAQL++DR LR ++F TG AK+ L N++R Sbjct: 118 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 176 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++IF V +DL+P +++ V L + +++ D+ Sbjct: 177 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD------------------ 218 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + S +RL +AF W Sbjct: 219 ---------RISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEW 258 [45][TOP] >UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica RepID=A9QME0_9PELO Length = 633 Score = 94.4 bits (233), Expect = 5e-18 Identities = 52/169 (30%), Positives = 90/169 (53%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E + + Y ++ + ++ + + + KEWAQL++DR LR ++F TG AK+ L N++R Sbjct: 132 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 190 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++IF V +DL+P +++ V L + +++ D+ Sbjct: 191 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD------------------ 232 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + S +RL +AF W Sbjct: 233 ---------RISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEW 272 [46][TOP] >UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis RepID=Q2TUN5_EPHVI Length = 1013 Score = 94.0 bits (232), Expect = 6e-18 Identities = 59/170 (34%), Positives = 87/170 (51%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 QE+ + Y+ +DI + + ++L E+ +L+ DR L E+ TGE PL VN++ Sbjct: 843 QENWHPTYMLPEMADDIKNISEFQDVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVNLK 902 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA++IF V SD+ P +IV ++ L R +V+ D+ Sbjct: 903 RLIWNAQKIFKVDPRKTSDMQPLEIVDTIDKLQERLKVVPGDD----------------- 945 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R+ ASK VL E+ LTR+AF W Sbjct: 946 ----------PLSFEAQKNATLFFNILLRSVFASKRVLKEYHLTREAFDW 985 [47][TOP] >UniRef100_O02462 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pedetontus saltator RepID=O02462_9INSE Length = 722 Score = 94.0 bits (232), Expect = 6e-18 Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + +N YL ++ + ++ G+V L +EW QL+KDRD LR ++F G+ K L Sbjct: 562 DPTNERYLRRIFNEDIMKELMGSGEVISELEREWEQLQKDRDCLR-QIFPNGDNKTVLPC 620 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWN ++IF + + +DLSP K++R V+ LL + ++ ++ Sbjct: 621 NLQRMIWNVQKIFHINKRATTDLSPLKVIRGVQHLLSKCIIVAGED-------------- 666 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLF+ VR++L ++ V E RL+ +AF W Sbjct: 667 -------------HLSKLANENATLLFRCLVRSTLCTRRVAEEFRLSSEAFEW 706 [48][TOP] >UniRef100_B4YT34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Sialis sp. ALW-2008 RepID=B4YT34_9NEOP Length = 555 Score = 94.0 bits (232), Expect = 6e-18 Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 5/174 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200 + N YL + +I SGGD+ + L KEW QL KDR+ LR ++F +G+ K+ L Sbjct: 385 DPGNERYLRRVFTEEIVRQLMASGGDLIQALEKEWDQLVKDREALR-QIFPSGDNKVVLP 443 Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380 N++R+IWN ++IF + +DLSP +++ V LL R ++ D+ Sbjct: 444 CNLQRMIWNVQKIFHINGRAPTDLSPLRVLDGVSELLRRCVIVAGDD------------- 490 Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS A NATLLF+ VR++L +K V E RL+ +AF W Sbjct: 491 --------------PLSRQANENATLLFRCLVRSTLCTKRVAEEFRLSHEAFEW 530 [49][TOP] >UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum RepID=Q1ACV3_ACEPM Length = 240 Score = 93.2 bits (230), Expect = 1e-17 Identities = 54/170 (31%), Positives = 90/170 (52%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 Q++ N Y+ Q ++++ + ++ ++ E +L+ DR L E+ +G++ P+ VN++ Sbjct: 73 QDNWNPNYMLQEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPMPVNLK 132 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA++ F V SD+ P ++V ++ L R +V+ D+ Sbjct: 133 RLIWNAQKTFKVDPRRPSDMHPMEVVEAIDKLQERLKVVPGDD----------------- 175 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL EHRLTR+AF W Sbjct: 176 ----------ALSVEAQKNATLFFNILLRSTFASKRVLQEHRLTREAFEW 215 [50][TOP] >UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis macrandra RepID=Q9C428_9FUNG Length = 1603 Score = 93.2 bits (230), Expect = 1e-17 Identities = 56/146 (38%), Positives = 78/146 (53%) Frame = +3 Query: 105 ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 284 ++L E+ QL +DR+ +R+ +F+ G++ PL NI RLIWNA+ + + N S+L P + Sbjct: 872 KVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEE 931 Query: 285 IVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 464 IVR V LL R V+T ++ LS AQ NATLLF Sbjct: 932 IVRDVNDLLSRCIVITGEDG---------------------------LSTMAQHNATLLF 964 Query: 465 QVHVRASLASKVVLSEHRLTRKAFTW 542 + VR LA+K V +EHRL R AF W Sbjct: 965 NILVRHLLATKRVYAEHRLNRNAFRW 990 [51][TOP] >UniRef100_A9QME8 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi RepID=A9QME8_9BILA Length = 252 Score = 92.8 bits (229), Expect = 1e-17 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 3/181 (1%) Frame = +3 Query: 9 LTEPDLHLQESSNS---PYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179 L E D L S Y + D+ + + +EW QL++DR LR ++F TG Sbjct: 93 LFEKDFKLDLSDEKMLKKYYKDEVVRDLQGSSEALNEVEEEWRQLEEDRRLLR-KIFPTG 151 Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359 +AK+ L N++RLIWNA++IF V +DL+P +++ V+ L + ++ S ED Sbjct: 152 DAKIVLPCNLQRLIWNAQKIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED----- 205 Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539 ++S+ AQ NATLL + +R++L SK + + H+L +AF Sbjct: 206 ---------------------KISKQAQYNATLLMNILIRSTLCSKKMATTHKLNAEAFE 244 Query: 540 W 542 W Sbjct: 245 W 245 [52][TOP] >UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SXC0_RICCO Length = 1855 Score = 91.7 bits (226), Expect = 3e-17 Identities = 57/169 (33%), Positives = 89/169 (52%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ Q ++D+ + ++ ++ E +L+ DR L E+ TG++ PL VN+ R Sbjct: 922 ENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRR 981 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V + SD+ P + V V+ L R +V+ D+ Sbjct: 982 LIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVPGDD------------------ 1023 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++LASK VL ++RLTR+AF W Sbjct: 1024 ---------PLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDW 1063 [53][TOP] >UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum RepID=B7SNX4_PEA Length = 1010 Score = 91.7 bits (226), Expect = 3e-17 Identities = 57/169 (33%), Positives = 87/169 (51%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ Y+ + + D+ + + + E +L DR L E+ TG++ LPL VN++R Sbjct: 841 ENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKR 900 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV ++ L R RV+ D+ Sbjct: 901 LIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVPGDD------------------ 942 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ AQ NATLLF + +R++ ASK VL E+RL+R+AF W Sbjct: 943 ---------LLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEW 982 [54][TOP] >UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1 Tax=Aphrocallistes vastus RepID=Q2N108_9METZ Length = 254 Score = 91.3 bits (225), Expect = 4e-17 Identities = 55/180 (30%), Positives = 92/180 (51%) Frame = +3 Query: 3 YHLTEPDLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGE 182 YH + + E ++S+ ++++ + +E+A+L DR LR E+FK G Sbjct: 77 YHFS----YTNERQLKKFISEDVIHELGVNPEAQAKFEEEFARLHDDRMILR-EIFKDGN 131 Query: 183 AKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAI 362 +K+ L N+ R+IWNA++ F + + SDL+P K++ VE L + V+ ED+ Sbjct: 132 SKVVLPCNLSRMIWNAQKTFKINTRNNSDLNPLKVIEGVEELCKKL-VIVDGEDS----- 185 Query: 363 AREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL +H+R++LA K V+ EH L+ +AF W Sbjct: 186 ---------------------ISKEAQYNATLLINIHLRSTLACKRVMEEHHLSSQAFDW 224 [55][TOP] >UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SF83_TETNG Length = 1745 Score = 90.5 bits (223), Expect = 7e-17 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 8/170 (4%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 808 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 866 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + +DLSP ++V + + + S +IA SG + + Sbjct: 867 IFRINTRTPTDLSPLRVVEGILSSVSLNEICCSPPFTLNISIADIQFEHVFGLSGTHELS 926 Query: 417 LK--------ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 K LS AQ NATLLF +H+R++L SK + E RL+ +AF W Sbjct: 927 KKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 976 [56][TOP] >UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas RepID=Q23699_CRAGI Length = 1340 Score = 90.5 bits (223), Expect = 7e-17 Identities = 55/162 (33%), Positives = 83/162 (51%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 LS+ + D+ L +EW QL++DRD LR +F TG++K+ L N++R+IWNA++ Sbjct: 845 LSEEVIKDLMGDALAVSQLDREWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQK 903 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + + +DL P K+V VE L R V+ + Sbjct: 904 IFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGD------------------------- 938 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS A NATLLF+ +R++L +K V E RL+ +AF W Sbjct: 939 --RLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEW 978 [57][TOP] >UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio RepID=UPI0000546D90 Length = 1972 Score = 90.1 bits (222), Expect = 9e-17 Identities = 50/162 (30%), Positives = 88/162 (54%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ + V L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 931 LQEDVVKDVMTNAHVQSSLEREFEKMREDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 989 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + +DL+P+++V V+ L + ++ D+ Sbjct: 990 IFRINPRAPTDLNPARVVDGVKELSKKLVIVNGDD------------------------- 1024 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +LS AQ NATLLF +H+R++L SK + E RL+ +AF W Sbjct: 1025 --QLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 1064 [58][TOP] >UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe tomentosa RepID=Q1ACT8_9MAGN Length = 240 Score = 90.1 bits (222), Expect = 9e-17 Identities = 56/166 (33%), Positives = 85/166 (51%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ + D+ + + + E +L+ DR L E+ TG+ LP+ VN++RLIW Sbjct: 77 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F V SD+ P +IV ++ L R +V+ ++ Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQERLKVVPGED--------------------- 175 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF + +R++ ASK VLSE+RLTR+AF W Sbjct: 176 ------SLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEW 215 [59][TOP] >UniRef100_A9QMG2 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura RepID=A9QMG2_9BILA Length = 273 Score = 90.1 bits (222), Expect = 9e-17 Identities = 52/157 (33%), Positives = 83/157 (52%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + D+ D E + EWAQL++DR LR ++F TGE+K L N++RLIWNA++IF V Sbjct: 134 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIFSTGESKCVLPCNLQRLIWNAQKIFHVE 192 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + + L+P ++R V L + ++ ED +S Sbjct: 193 KREPVCLNPLNVIRGVRSLSEKL-IIVGGED--------------------------RIS 225 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + AQ NATLL + +R++L +K + S H+L ++AF W Sbjct: 226 KQAQYNATLLMNILLRSTLCAKKMASTHKLNQEAFEW 262 [60][TOP] >UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB RepID=A1YIB1_9BASI Length = 1013 Score = 90.1 bits (222), Expect = 9e-17 Identities = 58/160 (36%), Positives = 81/160 (50%) Frame = +3 Query: 63 QAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIF 242 Q L+D S + +L KEW QL KDR LR +F G + PL VNI R+I NA++IF Sbjct: 850 QVGLDD--SSAALQSVLDKEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQIF 907 Query: 243 DVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK 422 + SDL P I++ V L +R V+ D+ Sbjct: 908 HIDFRKPSDLPPPDIIQMVNDLCNRLIVVRGDD--------------------------- 940 Query: 423 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF++ +R++ A++ VL E L+R+AF W Sbjct: 941 ALSRAAQXNATLLFRILLRSNFATRRVLEEFHLSREAFVW 980 [61][TOP] >UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A92 Length = 1714 Score = 89.7 bits (221), Expect = 1e-16 Identities = 51/162 (31%), Positives = 84/162 (51%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 912 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 970 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + +DLSP ++V L + ++ D+ Sbjct: 971 IFRINTRTPTDLSPLRVVEGTHELSKKLVIVNGDD------------------------- 1005 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L SK + E RL+ +AF W Sbjct: 1006 --PLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 1045 [62][TOP] >UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E658E Length = 1628 Score = 89.7 bits (221), Expect = 1e-16 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ + V L +E+ ++K+DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 932 LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 990 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + +DLSP ++V L + ++ D+ Sbjct: 991 IFRINTRTPTDLSPLRVVEGTHDLSKKLVIVNGDD------------------------- 1025 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ AQ NATLLF +H+R++L SK + E RL+ +AF W Sbjct: 1026 --PLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 1065 [63][TOP] >UniRef100_Q71ET3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Psilotum nudum RepID=Q71ET3_PSINU Length = 1013 Score = 89.7 bits (221), Expect = 1e-16 Identities = 56/169 (33%), Positives = 88/169 (52%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ +G+ PL VN++R Sbjct: 844 ENWNPDYMLAEHVEDLKTIQEFRNVFDAEVQKLEADRRQLCTEIAPSGDNSWPLPVNLKR 903 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++IF V SD+ P +IV V+ L R +V+ ++ Sbjct: 904 LIWNAQKIFKVDFRKPSDMHPMEIVEAVDKLQERLKVVPGED------------------ 945 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 E+S+ AQ NATL F + +R++LASK VL E+RLT++AF W Sbjct: 946 ---------EISKEAQKNATLFFNILLRSTLASKRVLKEYRLTKEAFEW 985 [64][TOP] >UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis RepID=B4MAN9_DROVI Length = 1889 Score = 89.7 bits (221), Expect = 1e-16 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + +D+ D + L EW +L DRD LR +F G++K+ L N+ Sbjct: 917 SNERYMRRVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP +++R V+ LL R ++T ++ Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND---------------- 1019 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [65][TOP] >UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis RepID=B4L732_DROMO Length = 1889 Score = 89.7 bits (221), Expect = 1e-16 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + +D+ D + L EW +L DRD LR +F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP +++R V+ LL R ++T ++ Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND---------------- 1019 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [66][TOP] >UniRef100_A9QMG3 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata RepID=A9QMG3_9BILA Length = 270 Score = 89.7 bits (221), Expect = 1e-16 Identities = 49/163 (30%), Positives = 86/163 (52%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 + + + ++ + + +EW QL++DR LR ++F TG+AK+ L N++RLIWNA+ Sbjct: 123 HYKEEVVRELQGSSEALTEIEEEWRQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 181 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF V +DL+P +++ V+ L + ++ S ED Sbjct: 182 KIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED----------------------- 217 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + + H+L +AF W Sbjct: 218 ---RISKQAQYNATLLMNILIRSTLCSKKMATSHKLNAEAFEW 257 [67][TOP] >UniRef100_Q1ACT1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Quercus coccinea RepID=Q1ACT1_9ROSI Length = 240 Score = 89.4 bits (220), Expect = 2e-16 Identities = 56/169 (33%), Positives = 85/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E N Y+ Q + D+ + + + E +L+ DR L E+ TG+ PL VN++R Sbjct: 74 EHWNPDYMMQEHIEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPLPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++IF + SD+ P +IV V+ L R +V+ ++ Sbjct: 134 LIWNAQKIFKIDNRRHSDMHPMEIVEAVDKLQERLKVVPGED------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E++LTR+AF W Sbjct: 176 ---------LLSVEAQKNATLFFNILLRSTFASKRVLEEYKLTREAFEW 215 [68][TOP] >UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK89_PHYPA Length = 1646 Score = 89.4 bits (220), Expect = 2e-16 Identities = 56/149 (37%), Positives = 79/149 (53%) Frame = +3 Query: 96 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275 D + E ++L+ DR + E+ TGEA PL VN++RLIWNA++IF V SD+ Sbjct: 930 DYINVFDAEVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQKIFKVDFRKPSDMH 989 Query: 276 PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455 P +IV V+ L R RV+ D+ ++S AQ NAT Sbjct: 990 PMEIVEAVDKLQERLRVVPGDD---------------------------QISMEAQRNAT 1022 Query: 456 LLFQVHVRASLASKVVLSEHRLTRKAFTW 542 L F +R++LASK VL ++RLTR+AF W Sbjct: 1023 LFFGCLLRSTLASKRVLKDYRLTREAFDW 1051 [69][TOP] >UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae RepID=B3MQ29_DROAN Length = 1889 Score = 89.4 bits (220), Expect = 2e-16 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + +D+ D + L EW +L DRD LR ++F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSDAIQELEAEWDRLVTDRDSLR-QIFPNGDSKVVLPCNL 975 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++ Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 1019 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [70][TOP] >UniRef100_Q9PTX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lethenteron reissneri RepID=Q9PTX4_LAMRE Length = 595 Score = 89.0 bits (219), Expect = 2e-16 Identities = 53/162 (32%), Positives = 84/162 (51%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + +NDI S + L KE+ +++ DRD LR VF TG++K+ L N+ R+IWNA++ Sbjct: 433 LQEEVVNDIMSNAHIQNELDKEFDRVRSDRDTLR-SVFPTGDSKVVLPCNLMRMIWNAQK 491 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + +D++P +I+ V+ L R ++ ++ Sbjct: 492 IFHINTRQPTDINPLRIIEGVQDLSKRLMIVKGED------------------------- 526 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLL HVR++L ++ V E RL+ +AF W Sbjct: 527 --PLSRQAQENATLLLNCHVRSTLCARRVTEEFRLSLQAFEW 566 [71][TOP] >UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max RepID=Q99368_SOYBN Length = 977 Score = 89.0 bits (219), Expect = 2e-16 Identities = 57/170 (33%), Positives = 88/170 (51%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 +E+ Y+ Q + D+ + + + E +L+ DR L E+ G+ LPL VN++ Sbjct: 113 EENWKPNYMLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLK 172 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA++ F V SD+ P +IV ++ L R +V+ EDA Sbjct: 173 RLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPG-EDA--------------- 216 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ AQ NATLLF + +R++ ASK VL E+RL+R++F W Sbjct: 217 -----------LSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEW 255 [72][TOP] >UniRef100_Q1ACU1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia scandens RepID=Q1ACU1_9MAGN Length = 240 Score = 89.0 bits (219), Expect = 2e-16 Identities = 57/169 (33%), Positives = 86/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++LASK VL E+RLTR+AF W Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215 [73][TOP] >UniRef100_Q1ACT2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nepenthes ampullaria RepID=Q1ACT2_9CARY Length = 240 Score = 89.0 bits (219), Expect = 2e-16 Identities = 58/169 (34%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E N Y+ + D+ + + + E +L+ DR L E+ TG+ PL VN+ R Sbjct: 74 EDWNPNYMLPDHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLTR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F + RSD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKIDLRRRSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++LASK VL E+RLTR+AF W Sbjct: 176 ---------FLSIEAQKNATLFFNILLRSTLASKRVLQEYRLTREAFDW 215 [74][TOP] >UniRef100_Q1ACS8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito RepID=Q1ACS8_9MAGN Length = 240 Score = 89.0 bits (219), Expect = 2e-16 Identities = 55/166 (33%), Positives = 85/166 (51%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ + D+ + + + E +L+ DR L E+ TG+ LP+ VN++RLIW Sbjct: 77 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F V SD+ P +IV ++ L + +V+ ++ Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQEKLKVVPGED--------------------- 175 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF + +R++ ASK VLSE+RLTR+AF W Sbjct: 176 ------SLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEW 215 [75][TOP] >UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5Y387_SORBI Length = 1874 Score = 89.0 bits (219), Expect = 2e-16 Identities = 58/163 (35%), Positives = 83/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 YL +D+ + + +L E +L+ DR L E+ G PL VN++RLIWNA+ Sbjct: 928 YLLPVHFDDLKTISEFRSVLEAEVHKLEADRFQLGTEIATNGSHTWPLPVNLKRLIWNAQ 987 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 + F + SD+ P +IV ++ L R +V+ D DAI+ E Sbjct: 988 KTFKIDIRTCSDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE-------------- 1028 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F +H+RA+ ASK VL E+RLTR+AF W Sbjct: 1029 --------AQKNATLFFNIHLRATFASKRVLREYRLTREAFEW 1063 [76][TOP] >UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora RepID=A9QMP5_9BILA Length = 474 Score = 89.0 bits (219), Expect = 2e-16 Identities = 49/157 (31%), Positives = 84/157 (53%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + D+ V E + KEW QL++DR LR ++F TG+AK+ L N++RLIWNA++IF V Sbjct: 137 IRDLQGDSQVMEEVEKEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVE 195 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + L+P ++++ V L + ++ D+ +S Sbjct: 196 TRQPTSLNPLRVIQGVRELSEKLVIVCGDD---------------------------RIS 228 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + AQ NATLL + +R++L SK + + ++L ++AF W Sbjct: 229 KQAQYNATLLMNILLRSTLCSKKMATTYKLNQEAFEW 265 [77][TOP] >UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis thaliana RepID=RPB1_ARATH Length = 1840 Score = 89.0 bits (219), Expect = 2e-16 Identities = 57/169 (33%), Positives = 87/169 (51%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N YLS L D+ ++ ++ E+++L+ DR L E+ G++ PL VNI+R Sbjct: 924 ENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKR 983 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 IWNA++ F + SD+ P +IV V+ L R V+ D+ Sbjct: 984 HIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDD------------------ 1025 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++LASK VL E++L+R+AF W Sbjct: 1026 ---------ALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEW 1065 [78][TOP] >UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351 Length = 2085 Score = 88.6 bits (218), Expect = 3e-16 Identities = 52/163 (31%), Positives = 83/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+ Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 + F + SD+ P +IV ++ L R +V+ D+D ++ Sbjct: 989 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIE------------------- 1029 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLT++AF W Sbjct: 1030 --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 1064 [79][TOP] >UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q5WMZ9_ORYSJ Length = 1741 Score = 88.6 bits (218), Expect = 3e-16 Identities = 52/163 (31%), Positives = 83/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+ Sbjct: 876 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 935 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 + F + SD+ P +IV ++ L R +V+ D+D ++ Sbjct: 936 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIE------------------- 976 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLT++AF W Sbjct: 977 --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 1011 [80][TOP] >UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum RepID=Q30BD9_9EUKA Length = 1852 Score = 88.6 bits (218), Expect = 3e-16 Identities = 59/163 (36%), Positives = 80/163 (49%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 ++ + I D LL E+ QL DR LR + T E PL VN++RLIWNA+ Sbjct: 920 FMDADIVQKIRDSADDRILLEAEFKQLMNDRTALRESI-PTDENTWPLPVNLKRLIWNAQ 978 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF + SDL P I++ V LL + V+ ++ Sbjct: 979 KIFHIDVRKPSDLDPVDIIKGVNLLTKQLVVIPGED------------------------ 1014 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NAT+LFQ+ VR+ LASK VL+E+RLT AF W Sbjct: 1015 ---PLSVEAQANATMLFQILVRSCLASKRVLTEYRLTSHAFEW 1054 [81][TOP] >UniRef100_Q2TUN8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taxus canadensis RepID=Q2TUN8_TAXCA Length = 1013 Score = 88.6 bits (218), Expect = 3e-16 Identities = 52/170 (30%), Positives = 86/170 (50%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 QE+ N Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++ Sbjct: 843 QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIATTGDNSWPMPVNLK 902 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA++ F + RSD+ P +IV ++ L R +V+ D+ ++ Sbjct: 903 RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLMSIE------------ 950 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+ LT++AF W Sbjct: 951 ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEW 985 [82][TOP] >UniRef100_Q1ACU6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dillenia suffruticosa RepID=Q1ACU6_9MAGN Length = 240 Score = 88.6 bits (218), Expect = 3e-16 Identities = 57/169 (33%), Positives = 85/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRCQLATEIATTGDNSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++LASK VL E+RLTR+AF W Sbjct: 176 ---------FLSTEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215 [83][TOP] >UniRef100_Q1ACU3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia cuneiformis RepID=Q1ACU3_9MAGN Length = 240 Score = 88.6 bits (218), Expect = 3e-16 Identities = 56/169 (33%), Positives = 86/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 L+WNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LVWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++LASK VL E+RLTR+AF W Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215 [84][TOP] >UniRef100_Q1ACS7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito RepID=Q1ACS7_9MAGN Length = 240 Score = 88.6 bits (218), Expect = 3e-16 Identities = 56/166 (33%), Positives = 84/166 (50%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ + D+ + + + E +L+ DR L E+ TG+ LP+ VN++RLIW Sbjct: 77 NPNYMLSEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F V SD+ P +IV ++ L R +V+ + Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQERLKVVPGAD--------------------- 175 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF + +R++ ASK VLSE+RLTR+AF W Sbjct: 176 ------SLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEW 215 [85][TOP] >UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q0DKN9_ORYSJ Length = 1834 Score = 88.6 bits (218), Expect = 3e-16 Identities = 52/163 (31%), Positives = 83/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 YLS D+ + ++ + E +L+ DR L E+ TG+ P+ VN++RLIWNA+ Sbjct: 929 YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 + F + SD+ P +IV ++ L R +V+ D+D ++ Sbjct: 989 KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIE------------------- 1029 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLT++AF W Sbjct: 1030 --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 1064 [86][TOP] >UniRef100_B7SNX1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana tabacum RepID=B7SNX1_TOBAC Length = 1010 Score = 88.6 bits (218), Expect = 3e-16 Identities = 56/166 (33%), Positives = 85/166 (51%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ A+ D+ + ++ + E +L+ DR L E+ TG+ PL VNI+RL+ Sbjct: 844 NPSYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVL 903 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F + RSD+ P +IV V+ L R +V+ D+ Sbjct: 904 NAQKTFKIDFRRRSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++LASK VL E+RL+R+AF W Sbjct: 943 ------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFDW 982 [87][TOP] >UniRef100_Q9BNE0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hadrurus arizonensis RepID=Q9BNE0_HADAR Length = 543 Score = 88.6 bits (218), Expect = 3e-16 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN YL + D+ G T L L +EW +L+KDR LR +F TG++K+ L Sbjct: 383 DPSNERYLRRIFTEDVVRELMGSATALSELEREWERLEKDRRVLR-SIFPTGDSKVVLPC 441 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWNA++IF V +DLSP ++V+ VE L+ + V+ ++ Sbjct: 442 NLQRMIWNAQKIFHVNLRSATDLSPLRVVQGVEELVKKLVVVPGED-------------- 487 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS A NATLLF+ +R++L +K V E RL+ +AF W Sbjct: 488 -------------RLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEW 527 [88][TOP] >UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis wirthi RepID=Q6GYH6_9BILA Length = 630 Score = 88.6 bits (218), Expect = 3e-16 Identities = 51/169 (30%), Positives = 87/169 (51%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E + Y ++ + D+ S + + EWAQL++DR LR ++F TG AK+ L N++R Sbjct: 138 EKALKKYYTEDVVRDLVSSTEAFREVEAEWAQLEEDRQLLR-KIFPTGNAKIVLPCNLQR 196 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++IF V + L+P K+++ V L + ++ ++ Sbjct: 197 LIWNAQKIFHVEMRKPTTLNPMKVIQGVRELSKKLIIVNGED------------------ 238 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + S ++L +AF W Sbjct: 239 ---------RISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDW 278 [89][TOP] >UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1 Tax=Drosophila simulans RepID=Q1WKU2_DROSI Length = 746 Score = 88.6 bits (218), Expect = 3e-16 Identities = 49/157 (31%), Positives = 84/157 (53%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + Sbjct: 73 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 131 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + +DLSP ++++ V+ LL R ++T ++ +S Sbjct: 132 KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 164 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 165 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201 [90][TOP] >UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum RepID=O01364_9BILA Length = 633 Score = 88.6 bits (218), Expect = 3e-16 Identities = 50/163 (30%), Positives = 86/163 (52%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 + ++ + D+ + + EWAQL++DR LR ++F TG+AK+ L N++RL+WNA+ Sbjct: 138 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 196 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF V +DL+P +++ V L + V+ ED Sbjct: 197 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED----------------------- 232 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + S ++L ++AF W Sbjct: 233 ---RISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDW 272 [91][TOP] >UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia RepID=B4IK28_DROSE Length = 1887 Score = 88.6 bits (218), Expect = 3e-16 Identities = 49/157 (31%), Positives = 84/157 (53%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + +DLSP ++++ V+ LL R ++T ++ +S Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 1022 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [92][TOP] >UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster RepID=A9UNH9_DROME Length = 1887 Score = 88.6 bits (218), Expect = 3e-16 Identities = 49/157 (31%), Positives = 84/157 (53%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + +DLSP ++++ V+ LL R ++T ++ +S Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 1022 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [93][TOP] >UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf. armata SB363 RepID=A9UEE2_9BILA Length = 475 Score = 88.6 bits (218), Expect = 3e-16 Identities = 51/141 (36%), Positives = 78/141 (55%) Frame = +3 Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299 EWAQL++DR LR ++F TG+AK+ L N++RLIWNA++IF V +DL+P +++ + Sbjct: 154 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGI 212 Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479 L + V+ S ED +S+ AQ NATLL + +R Sbjct: 213 RELSTKL-VIVSGED--------------------------RISQQAQYNATLLMNILIR 245 Query: 480 ASLASKVVLSEHRLTRKAFTW 542 ++L SK + S H+L +AF W Sbjct: 246 STLCSKKMASTHKLNSEAFEW 266 [94][TOP] >UniRef100_A9QMQ5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum RepID=A9QMQ5_9BILA Length = 276 Score = 88.6 bits (218), Expect = 3e-16 Identities = 50/163 (30%), Positives = 86/163 (52%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 + ++ + D+ + + EWAQL++DR LR ++F TG+AK+ L N++RL+WNA+ Sbjct: 131 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 189 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF V +DL+P +++ V L + V+ ED Sbjct: 190 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED----------------------- 225 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + S ++L ++AF W Sbjct: 226 ---RISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDW 265 [95][TOP] >UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130 RepID=A9QMH3_9BILA Length = 619 Score = 88.6 bits (218), Expect = 3e-16 Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 3/181 (1%) Frame = +3 Query: 9 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179 L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F +G Sbjct: 116 LFEQDFKLDLSDERTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPSG 174 Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359 AK+ L N++RL+WNA++IF V +DL+P +++ V L + ++ S ED Sbjct: 175 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED----- 228 Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539 ++S+ AQ NATLL + VR++L SK + S+++L +AF Sbjct: 229 ---------------------KISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFE 267 Query: 540 W 542 W Sbjct: 268 W 268 [96][TOP] >UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius dolichuroides RepID=A9QMG1_9BILA Length = 629 Score = 88.6 bits (218), Expect = 3e-16 Identities = 49/157 (31%), Positives = 83/157 (52%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + D+ D E + EWAQL++DR LR +++ TGE+K L N++RLIWNA++IF V Sbjct: 151 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIYATGESKCVLPCNLQRLIWNAQKIFHVE 209 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + + L+P ++R V L + ++ D+ +S Sbjct: 210 KREPVCLNPLNVIRGVRSLSEKLIIVGGDD---------------------------RIS 242 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + AQ NATLL + +R++L +K + + H+L ++AF W Sbjct: 243 KQAQYNATLLMNILLRSTLCAKKMATTHKLNQEAFEW 279 [97][TOP] >UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae RepID=A9QME1_9BILA Length = 628 Score = 88.6 bits (218), Expect = 3e-16 Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 3/181 (1%) Frame = +3 Query: 9 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179 L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F G Sbjct: 117 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 175 Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359 AK+ L N++RL+WNA++IF V +DL+P +++ V L + ++ S ED Sbjct: 176 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKL-IIVSGED----- 229 Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539 +S+ AQ NATLL + VR++L SK + S+++L +AF Sbjct: 230 ---------------------RISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFE 268 Query: 540 W 542 W Sbjct: 269 W 269 [98][TOP] >UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila melanogaster RepID=RPB1_DROME Length = 1887 Score = 88.6 bits (218), Expect = 3e-16 Identities = 49/157 (31%), Positives = 84/157 (53%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + ++ + + L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + Sbjct: 931 IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + +DLSP ++++ V+ LL R ++T ++ +S Sbjct: 990 KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 1022 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [99][TOP] >UniRef100_Q1ACU5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dionaea muscipula RepID=Q1ACU5_DIOMU Length = 240 Score = 88.2 bits (217), Expect = 3e-16 Identities = 55/166 (33%), Positives = 84/166 (50%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ + D+ S + ++ E ++L+ DR L ++ TG+ PL VN+ RLI Sbjct: 77 NPKYIRPDYIEDLKSIPEFHDVFEAEISKLESDRLLLATQIATTGDNSWPLPVNLARLIQ 136 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA+++F + SDL P +IV V+ L R RV+ D+ Sbjct: 137 NAQKLFKIDTRGTSDLMPMEIVEAVDKLQERLRVVPGDD--------------------- 175 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ AQ NATL F + +R++LA K VL E+RL+R+AF W Sbjct: 176 ------HLSDEAQRNATLFFNILLRSTLACKRVLQEYRLSREAFEW 215 [100][TOP] >UniRef100_Q1ACU2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia aspera RepID=Q1ACU2_9MAGN Length = 240 Score = 88.2 bits (217), Expect = 3e-16 Identities = 57/169 (33%), Positives = 85/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++LASK VL E+RLTR+AF W Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215 [101][TOP] >UniRef100_Q1ACS6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Senecio picticaulis RepID=Q1ACS6_9ASTR Length = 240 Score = 88.2 bits (217), Expect = 3e-16 Identities = 58/169 (34%), Positives = 85/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMIPDHVEDLKTIREFRNVFDAEVQKLEADRIQLGTEIATTGDNSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R RV+ D+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VLSE+RLTR+AF W Sbjct: 176 ---------LLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFDW 215 [102][TOP] >UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS Length = 1811 Score = 88.2 bits (217), Expect = 3e-16 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+ Sbjct: 839 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 897 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T + Sbjct: 898 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 941 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 942 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 981 [103][TOP] >UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q29IN2_DROPS Length = 1889 Score = 88.2 bits (217), Expect = 3e-16 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T + Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [104][TOP] >UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis RepID=B4H2R8_DROPE Length = 1804 Score = 88.2 bits (217), Expect = 3e-16 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + + ++ + + L EW L +DRD LR ++F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T + Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [105][TOP] >UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus RepID=B0XAQ9_CULQU Length = 1874 Score = 88.2 bits (217), Expect = 3e-16 Identities = 50/161 (31%), Positives = 85/161 (52%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ + ++ GDV + + E+ QL +DR+ LR ++F G++K+ L N++R+IWN ++I Sbjct: 925 NEEVIKELTESGDVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F + + +DLSP K+++ V LL + ++ + Sbjct: 984 FHINKRAPTDLSPLKVIQGVRDLLQKCVIVAGTD-------------------------- 1017 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VR++L +K V E RL +AF W Sbjct: 1018 -RLSKQANENATLLFQCLVRSTLCTKYVAEEFRLINEAFEW 1057 [106][TOP] >UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius varius RepID=A8BDP1_PARVA Length = 467 Score = 88.2 bits (217), Expect = 3e-16 Identities = 52/174 (29%), Positives = 91/174 (52%) Frame = +3 Query: 21 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200 DL+L E + YL++ + D+ + L +EW ++K+D+ LR ++F TG++K+ L Sbjct: 62 DLNLNERTLKRYLNEDIVKDLIANTHCLTELEREWERIKEDQTLLR-QIFPTGDSKVVLP 120 Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380 N++R+IWNA++IF + SDL P K+VR V+ L + V+ Sbjct: 121 CNLQRIIWNAQKIFRINPRLPSDLHPLKVVRGVQELSEKLIVV----------------- 163 Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + + +S+ AQL+AT L +R++L ++ V E +L+ AF W Sbjct: 164 ----------KGVDRISQRAQLDATFLMNALIRSTLCTRRVAEEFKLSSDAFDW 207 [107][TOP] >UniRef100_Q9BNE5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Branchia sp. 'Ere' RepID=Q9BNE5_9ARAC Length = 232 Score = 87.8 bits (216), Expect = 4e-16 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 ++SN Y+ ++ + ++ L KEW +LKKDR+ LR +F TG++K+ + Sbjct: 72 DASNERYMHRIFTEEVVRELMGSAMALSELEKEWERLKKDREVLR-TIFPTGDSKVVMPC 130 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWNA++IF V ++DLSP + ++ VE L+ + ++ ++ Sbjct: 131 NLQRMIWNAQKIFHVNTRSQTDLSPLRTIKGVEDLVKKLVIVPGED-------------- 176 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS A NATLLF+ +R++L +K V E RL+ +AF W Sbjct: 177 -------------RLSIQANDNATLLFRALLRSTLCTKRVSDEFRLSTEAFDW 216 [108][TOP] >UniRef100_O02452 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mastigoproctus giganteus RepID=O02452_MASGI Length = 887 Score = 87.8 bits (216), Expect = 4e-16 Identities = 53/161 (32%), Positives = 84/161 (52%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ + D+ L KEW +LKKDR+ LR VF TG++K+ L N++R+IWNA++I Sbjct: 574 TEDVVRDLLGSATALSELEKEWERLKKDREVLR-TVFPTGDSKVVLPCNLQRMIWNAQKI 632 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F V +DLSP +++ VE L+ + ++ ++ Sbjct: 633 FRVNARAPTDLSPFRVIHGVEDLVKKLIIVPGED-------------------------- 666 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS A NATLLF+ +R++L +K V E RL+ +AF W Sbjct: 667 -RLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEW 706 [109][TOP] >UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni RepID=B4NDK9_DROWI Length = 1890 Score = 87.8 bits (216), Expect = 4e-16 Identities = 50/157 (31%), Positives = 83/157 (52%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + ++ D + L EW +L DRD LR ++F G++K+ L N++R+IWN ++IF + Sbjct: 931 IKEMTDSSDAIQELESEWDRLVVDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHIN 989 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + +DLSP ++++ V LL R ++T ++ +S Sbjct: 990 KRLPTDLSPMRVIKGVRGLLERCVIVTGND---------------------------RIS 1022 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + A NATLLFQ VR++L +K V E RL+ +AF W Sbjct: 1023 KQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEW 1059 [110][TOP] >UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara RepID=A9QMS7_9BILA Length = 407 Score = 87.8 bits (216), Expect = 4e-16 Identities = 50/157 (31%), Positives = 86/157 (54%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + ++ + + + + +EW QL+ DR LR ++F TG+A + L N++R++WNA++IF V Sbjct: 148 IRELQNSPEALQAVEEEWIQLESDRRLLR-KIFPTGKAGVVLPCNLDRMMWNARKIFHVE 206 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 +DLSP K+++ V+ L R V+ S ED ++S Sbjct: 207 TRKPTDLSPLKVIQGVKDLTSRL-VIVSGED--------------------------KIS 239 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + AQ NATLL + +R++L SK + +H+L +AF W Sbjct: 240 QQAQYNATLLMNILLRSTLCSKRLAEKHKLNTEAFEW 276 [111][TOP] >UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347 RepID=A9QMF8_9BILA Length = 621 Score = 87.8 bits (216), Expect = 4e-16 Identities = 52/169 (30%), Positives = 86/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E S ++ + ++ D + EW QL++DR LR ++F TG+AK+ L N++R Sbjct: 136 EKSLRTLYTEDVVRELQGSSDALKEAEAEWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++IF V +DL+P +++ V L + ++ S ED Sbjct: 195 LIWNAQKIFHVETRKPTDLNPIRVIEGVRELSSKL-IIVSGED----------------- 236 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + S ++L +AF W Sbjct: 237 ---------RISKQAQYNATLLMNILIRSTLCSKKMASTYKLNSEAFEW 276 [112][TOP] >UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1 Tax=Drosophila erecta RepID=Q1WKU4_DROER Length = 760 Score = 87.4 bits (215), Expect = 6e-16 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+ Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++ Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 161 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 162 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201 [113][TOP] >UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster subgroup RepID=Q1WKU0_DROYA Length = 766 Score = 87.4 bits (215), Expect = 6e-16 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+ Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++ Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 161 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 162 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201 [114][TOP] >UniRef100_O02450 DNA-directed RNA polymerase (Fragment) n=1 Tax=Limulus polyphemus RepID=O02450_LIMPO Length = 778 Score = 87.4 bits (215), Expect = 6e-16 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 4/172 (2%) Frame = +3 Query: 39 SSNSPYLSQAALNDIHSG--GDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 206 +SN YL + D+ G T L L KEW +LK DR+ LR +F TG++K+ L N Sbjct: 454 ASNERYLRRIFTEDVVRDLMGSATALSELEKEWEKLKHDRELLR-AIFPTGDSKVVLPCN 512 Query: 207 IERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPD 386 ++R+IW+A++IF V Q +DLSP K++ VE L+ + V+ ++ Sbjct: 513 LQRMIWSAQKIFHVNQRAPTDLSPLKVIGGVEELVKKLVVVPGED--------------- 557 Query: 387 GSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS A NAT+LF+ +R++L +K V E RL+ ++F W Sbjct: 558 ------------RLSIQANDNATILFRALLRSTLCAKRVAEEFRLSSESFQW 597 [115][TOP] >UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba RepID=B4PY98_DROYA Length = 1889 Score = 87.4 bits (215), Expect = 6e-16 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++ Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 1019 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [116][TOP] >UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi RepID=B4JXA6_DROGR Length = 1889 Score = 87.4 bits (215), Expect = 6e-16 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 5/172 (2%) Frame = +3 Query: 42 SNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 206 SN Y+ + +D+ S + EL A EW L DRD LR +F+ G++K+ L N Sbjct: 917 SNERYMRKVFADDVIKEITESSVAIQELEA-EWDHLVTDRDNLR-TIFRNGDSKVVLPCN 974 Query: 207 IERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPD 386 ++R+IWN ++IF + + +DLSP +++R V LL+R ++T ++ Sbjct: 975 LQRMIWNVQKIFHINKRLPTDLSPMRVIRGVSDLLNRCVIVTGND--------------- 1019 Query: 387 GSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 ------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [117][TOP] >UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta RepID=B3NUC1_DROER Length = 1889 Score = 87.4 bits (215), Expect = 6e-16 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + +D+ + + L EW +L DRD LR ++F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++ Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 1019 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [118][TOP] >UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster subgroup RepID=A9YGC1_DROME Length = 247 Score = 87.4 bits (215), Expect = 6e-16 Identities = 49/144 (34%), Positives = 79/144 (54%) Frame = +3 Query: 111 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 290 L EW +L DRD LR ++F GE+K+ L N++R+IWN ++IF + + +DLSP +++ Sbjct: 1 LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 59 Query: 291 RXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 470 + V+ LL R ++T ++ +S+ A NATLLFQ Sbjct: 60 KGVKTLLERCVIVTGND---------------------------RISKQANENATLLFQC 92 Query: 471 HVRASLASKVVLSEHRLTRKAFTW 542 +R++L +K V E RL+ +AF W Sbjct: 93 LIRSTLCTKYVSEEFRLSTEAFEW 116 [119][TOP] >UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CBQ3_YARLI Length = 1750 Score = 87.4 bits (215), Expect = 6e-16 Identities = 56/156 (35%), Positives = 80/156 (51%) Frame = +3 Query: 75 NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 254 NDI +V +L +E+ QL DR LR EVF G+ PL VNI R++ N++RIF+V + Sbjct: 920 NDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQRIFNVDK 979 Query: 255 NDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSE 434 + SDL+ +IV V+ L R ++ D L++ Sbjct: 980 SKVSDLTIPEIVEGVQSLCKRLTIVRGD---------------------------SSLAK 1012 Query: 435 TAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NAT+LFQ VR+ +K V+ E+RL R AF W Sbjct: 1013 EAQENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEW 1048 [120][TOP] >UniRef100_Q71ET4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda RepID=Q71ET4_AMBTC Length = 1013 Score = 87.0 bits (214), Expect = 8e-16 Identities = 54/170 (31%), Positives = 86/170 (50%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 QE+ + Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++ Sbjct: 843 QENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLK 902 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA+++F V SD+ P +IV V+ L R +V+ D+ ++ Sbjct: 903 RLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------ 950 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 951 ---------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFDW 985 [121][TOP] >UniRef100_Q2TUN9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thuja occidentalis RepID=Q2TUN9_THUOC Length = 1013 Score = 87.0 bits (214), Expect = 8e-16 Identities = 51/170 (30%), Positives = 86/170 (50%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 QE+ N Y+ ++D+ + + + E +L+ DR L E+ +G+ P+ VN++ Sbjct: 843 QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVNLK 902 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA++ F + RSD+ P +IV ++ L R +V+ D+ ++ Sbjct: 903 RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLISIE------------ 950 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+ LT++AF W Sbjct: 951 ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEW 985 [122][TOP] >UniRef100_Q9NJM1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hanseniella sp. 'Han' RepID=Q9NJM1_9MYRI Length = 468 Score = 87.0 bits (214), Expect = 8e-16 Identities = 50/161 (31%), Positives = 82/161 (50%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ + D+ V L KEW L+KDR LR E+F G++K+ L N++R+IWNA++I Sbjct: 320 TEDVVKDLIGSAQVLSELEKEWELLQKDRKSLR-EIFPKGDSKVVLPCNLQRMIWNAQKI 378 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F + Q +DL+P +++ V L + ++ ++ Sbjct: 379 FHINQRSATDLNPVRVIEGVRELTKKIVIVVGED-------------------------- 412 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLF +R++L +K V E RLT +AF W Sbjct: 413 -RISKQANENATLLFNCLLRSTLCTKRVAEEFRLTTEAFEW 452 [123][TOP] >UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1 Tax=Drosophila orena RepID=Q1WKU3_DROOR Length = 750 Score = 87.0 bits (214), Expect = 8e-16 Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + +D+ + + L EW L DRD LR ++F G++K+ L N+ Sbjct: 59 SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDHLVGDRDSLR-QIFPNGDSKVVLPCNL 117 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T ++ Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 161 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 162 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201 [124][TOP] >UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae RepID=A9QMP3_9BILA Length = 406 Score = 87.0 bits (214), Expect = 8e-16 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 3/181 (1%) Frame = +3 Query: 9 LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179 L E D L E + Y ++ + ++ + + + +EW QL++DR LR ++F G Sbjct: 124 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 182 Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359 AK+ L N++RL+WNA++IF V +DL+P +++ V L + +++ + Sbjct: 183 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKLIIVSGE------- 235 Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539 +S+ AQ NATLL + VR++L SK + S+++L +AF Sbjct: 236 --------------------NRISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFE 275 Query: 540 W 542 W Sbjct: 276 W 276 [125][TOP] >UniRef100_Q1ACV1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis beckleri RepID=Q1ACV1_9MAGN Length = 240 Score = 86.7 bits (213), Expect = 1e-15 Identities = 57/169 (33%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 ES N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ESWNPGYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215 [126][TOP] >UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei RepID=Q6E228_9BILA Length = 621 Score = 86.7 bits (213), Expect = 1e-15 Identities = 49/169 (28%), Positives = 89/169 (52%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E + + ++ + D+ + + + EW QL++DR LR ++F TG+AK+ L N++R Sbjct: 136 EKTLRKFYTEEVVRDLQGSTEAMKEVESEWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++IF V +DL+P +++ ++ L + ++ S ED Sbjct: 195 LIWNAQKIFHVETRKPTDLNPLRVIDGIKELSSKL-IIVSGED----------------- 236 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + S ++L ++F W Sbjct: 237 ---------RISQQAQYNATLLMNILIRSTLCSKKMASTYKLNAESFEW 276 [127][TOP] >UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus regenfussi RepID=A9QMG9_9BILA Length = 620 Score = 86.7 bits (213), Expect = 1e-15 Identities = 47/141 (33%), Positives = 78/141 (55%) Frame = +3 Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299 EWAQL++DR LR ++F G+AK+ L N++RLIWNA+++F V +++L+P +++ V Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQKVFHVETRKQTELNPLRVIEGV 214 Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479 L + ++ D+ +S+ AQ NATLL + +R Sbjct: 215 RELSKKLVIVGGDD---------------------------RISKQAQFNATLLMNILLR 247 Query: 480 ASLASKVVLSEHRLTRKAFTW 542 ++L SK V +HRL ++AF W Sbjct: 248 STLCSKQVAEKHRLNQEAFEW 268 [128][TOP] >UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides dermatitica RepID=A9QMG4_9PELO Length = 478 Score = 86.7 bits (213), Expect = 1e-15 Identities = 49/161 (30%), Positives = 82/161 (50%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ + D+ + + + EW QL++DR LR ++F G+ K+ L N++RLIWNA++I Sbjct: 126 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 184 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F V S L+P K+V V+ L H+ ++ D+ Sbjct: 185 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD-------------------------- 218 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + +HRL + F W Sbjct: 219 -RISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEW 258 [129][TOP] >UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera strongyloides dermatitica RepID=A9QMF0_9PELO Length = 633 Score = 86.7 bits (213), Expect = 1e-15 Identities = 49/161 (30%), Positives = 82/161 (50%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ + D+ + + + EW QL++DR LR ++F G+ K+ L N++RLIWNA++I Sbjct: 145 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 203 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F V S L+P K+V V+ L H+ ++ D+ Sbjct: 204 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD-------------------------- 237 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + +HRL + F W Sbjct: 238 -RISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEW 277 [130][TOP] >UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN Length = 1935 Score = 86.7 bits (213), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 899 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 957 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 958 IFHINPRLPSDLHPIKVVEGVKKLSKKLVIVNGDD------------------------- 992 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 993 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1032 [131][TOP] >UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis RepID=Q2PYR1_9FUNG Length = 1022 Score = 86.7 bits (213), Expect = 1e-15 Identities = 57/170 (33%), Positives = 86/170 (50%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 ++S S L + L ++ +V +L E+ QLK+DR LR + + GEA+ P+ VN+ Sbjct: 852 EKSFPSGTLEFSVLKNVEGNDEVQRVLDDEYEQLKEDRHILRKFIARDGEARRPMPVNLP 911 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLI NA++IF + S+LSP +IV + L VL + D++ RE Sbjct: 912 RLIKNAQQIFHIDHRKPSNLSPVEIVEKIRKLADSLIVLRGN-----DSLTRE------- 959 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATLLFQ+++R++ SK VL E+ L A W Sbjct: 960 ---------------AQQNATLLFQIYLRSTFPSKRVLQEYHLNSNALDW 994 [132][TOP] >UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase II subunit A) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Equus caballus RepID=UPI0001796DD3 Length = 1834 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [133][TOP] >UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2 Length = 1970 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [134][TOP] >UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648 Length = 1913 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [135][TOP] >UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Macaca mulatta RepID=UPI0000D9E16B Length = 1193 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [136][TOP] >UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2C Length = 1888 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [137][TOP] >UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2B Length = 1892 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069 [138][TOP] >UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2A Length = 1896 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069 [139][TOP] >UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B29 Length = 1891 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 903 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 961 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 962 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 996 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 997 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1036 [140][TOP] >UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B28 Length = 1908 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 979 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1013 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1014 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1053 [141][TOP] >UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 18 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B27 Length = 1831 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [142][TOP] >UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 17 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B26 Length = 1684 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 924 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 983 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1017 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1018 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1057 [143][TOP] >UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 16 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B25 Length = 1752 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 924 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 983 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1017 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1018 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1057 [144][TOP] >UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B24 Length = 1924 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069 [145][TOP] >UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 14 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B23 Length = 1653 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 907 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 966 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1000 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1001 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1040 [146][TOP] >UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 13 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B22 Length = 1722 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 907 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 966 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1000 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1001 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1040 [147][TOP] >UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B21 Length = 1922 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [148][TOP] >UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B20 Length = 1923 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 935 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 993 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 994 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1028 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1029 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1068 [149][TOP] >UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 10 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1F Length = 1840 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 930 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 989 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1023 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1024 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1063 [150][TOP] >UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 9 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1E Length = 1851 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 930 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 989 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1023 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1024 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1063 [151][TOP] >UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris RepID=UPI00005A0B1D Length = 1764 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 952 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 1010 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 1011 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1045 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1046 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1085 [152][TOP] >UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 5 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B19 Length = 1693 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 979 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1013 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1014 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1053 [153][TOP] >UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B17 Length = 1788 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [154][TOP] >UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B16 Length = 1922 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [155][TOP] >UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus RepID=UPI0001B7A25C Length = 1968 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 936 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 995 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069 [156][TOP] >UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus RepID=UPI0001B7A25B Length = 1932 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [157][TOP] >UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8 Length = 1970 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [158][TOP] >UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus familiaris RepID=UPI0001951285 Length = 1969 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [159][TOP] >UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE Length = 1966 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [160][TOP] >UniRef100_Q1ACV2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Aextoxicon punctatum RepID=Q1ACV2_9MAGN Length = 240 Score = 86.3 bits (212), Expect = 1e-15 Identities = 56/169 (33%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKVDLRXPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215 [161][TOP] >UniRef100_Q1ACU9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis corallina RepID=Q1ACU9_9MAGN Length = 240 Score = 86.3 bits (212), Expect = 1e-15 Identities = 55/169 (32%), Positives = 86/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + + + + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPTYMLPEHVEGLKTILEFSNVFEAEIRKLEADRYQLGTEIATTGDNSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F+V SD+ P++IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFEVDLRRPSDMHPTEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 176 ---------LLSTEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDW 215 [162][TOP] >UniRef100_Q1ACT3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nelumbo nucifera RepID=Q1ACT3_NELNU Length = 240 Score = 86.3 bits (212), Expect = 1e-15 Identities = 56/169 (33%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNNWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215 [163][TOP] >UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp. RepID=O04144_9VIRI Length = 613 Score = 86.3 bits (212), Expect = 1e-15 Identities = 55/170 (32%), Positives = 86/170 (50%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 QE + Y+ D + +++ E QL++DR L E+ TG++ PL VNI+ Sbjct: 431 QEDWSPDYMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIK 490 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA++IF + SD++P +V ++ L R +V+ D D I+RE Sbjct: 491 RLIWNAQKIFKIDLRKPSDMNPMDVVDGMDKLQERLKVVVGD-----DHISRE------- 538 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F +R++++SK VL ++RL +AF W Sbjct: 539 ---------------AQKNATLFFNCLLRSTMSSKQVLKDYRLNMEAFQW 573 [164][TOP] >UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis RepID=Q9XZS2_DROMD Length = 1889 Score = 86.3 bits (212), Expect = 1e-15 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + + +I + + L EW L DRD LR +F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDEVIKEITDSSEAIQDLESEWDNLMHDRDNLR-VIFPNGDSKVVLPCNL 975 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T + Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [165][TOP] >UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PJA3_IXOSC Length = 1937 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/144 (35%), Positives = 80/144 (55%) Frame = +3 Query: 111 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 290 L KEW +LK+DR+ LR +F TG++K+ L N++R++WNA++IF V +DLSP ++V Sbjct: 952 LEKEWERLKRDREALR-TIFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTDLSPLRVV 1010 Query: 291 RXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 470 + VE L+ + ++ ++ LS A NATLLF+ Sbjct: 1011 QGVEELVKKLVIVPGED---------------------------HLSIQANENATLLFRS 1043 Query: 471 HVRASLASKVVLSEHRLTRKAFTW 542 +RA+L SK V E RL+ ++F W Sbjct: 1044 LLRATLCSKRVAEEFRLSTESFEW 1067 [166][TOP] >UniRef100_A9QMT4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis sp. JU274 RepID=A9QMT4_9PELO Length = 280 Score = 86.3 bits (212), Expect = 1e-15 Identities = 50/163 (30%), Positives = 88/163 (53%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 + ++ + +I + +L+ +EWAQL++DR LR ++F G+AK+ L N+ RLIWNA+ Sbjct: 137 FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 195 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF V ++L+P++++ V L + ++ S ED Sbjct: 196 KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED----------------------- 231 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + S ++L +AF W Sbjct: 232 ---RISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEW 271 [167][TOP] >UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp. EM434 RepID=A9QMQ7_9BILA Length = 398 Score = 86.3 bits (212), Expect = 1e-15 Identities = 53/174 (30%), Positives = 90/174 (51%) Frame = +3 Query: 21 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200 DL ++S Y ++ +++ + + EW QL++DR LR ++F +G+AK+ L Sbjct: 132 DLSDEKSLRKMY-TEDVQHELQGSSEALKEAEDEWNQLEEDRRLLR-KIFPSGDAKIVLP 189 Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380 N++RLIWNA++IF V +DL+P +++ V L + ++ S ED Sbjct: 190 CNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED------------ 236 Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + + HRL +AF W Sbjct: 237 --------------RISKQAQYNATLLMNILIRSTLCSKKMATSHRLNSEAFEW 276 [168][TOP] >UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274 RepID=A9QME6_9PELO Length = 526 Score = 86.3 bits (212), Expect = 1e-15 Identities = 50/163 (30%), Positives = 88/163 (53%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 + ++ + +I + +L+ +EWAQL++DR LR ++F G+AK+ L N+ RLIWNA+ Sbjct: 39 FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 97 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF V ++L+P++++ V L + ++ S ED Sbjct: 98 KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED----------------------- 133 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + S ++L +AF W Sbjct: 134 ---RISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEW 173 [169][TOP] >UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN Length = 1970 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [170][TOP] >UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa RepID=Q2PYR6_9FUNG Length = 1013 Score = 86.3 bits (212), Expect = 1e-15 Identities = 57/162 (35%), Positives = 83/162 (51%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + L +I V +L E+A+L DR +R + K+G K PL +N+ERLI A++ Sbjct: 850 LDFSILKNIEGNEAVQRVLDDEFAKLADDRRMMREFILKSGTDKQPLPLNVERLIKIAQQ 909 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 F++ S+L+P +IV V+ L + ED Sbjct: 910 TFNIDVRRPSNLNPVEIVNLVKSLTESRIPVIRGED------------------------ 945 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +LS AQ NATLLFQ+H+RASLA+K V+ E LT++AF W Sbjct: 946 --QLSVEAQTNATLLFQIHLRASLATKRVIEEFHLTKEAFDW 985 [171][TOP] >UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus RepID=RPB1_MOUSE Length = 1970 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [172][TOP] >UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires RepID=RPB1_HUMAN Length = 1970 Score = 86.3 bits (212), Expect = 1e-15 Identities = 51/162 (31%), Positives = 85/162 (52%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [173][TOP] >UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=UPI0001985649 Length = 1848 Score = 85.9 bits (211), Expect = 2e-15 Identities = 57/169 (33%), Positives = 85/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 922 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKR 981 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D D I+ E Sbjct: 982 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME-------- 1028 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 1029 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 1063 [174][TOP] >UniRef100_Q1ACU7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Cissus tuberosa RepID=Q1ACU7_9MAGN Length = 240 Score = 85.9 bits (211), Expect = 2e-15 Identities = 55/169 (32%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ V+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLISVE------------- 180 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 181 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215 [175][TOP] >UniRef100_Q1ACS4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis piasezkii RepID=Q1ACS4_9MAGN Length = 240 Score = 85.9 bits (211), Expect = 2e-15 Identities = 57/169 (33%), Positives = 85/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D D I+ E Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME-------- 180 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 181 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215 [176][TOP] >UniRef100_B7SNX3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Persea americana RepID=B7SNX3_PERAE Length = 1009 Score = 85.9 bits (211), Expect = 2e-15 Identities = 56/169 (33%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 840 ENWNPGYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 899 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 900 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 941 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 942 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 981 [177][TOP] >UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NVN7_VITVI Length = 1010 Score = 85.9 bits (211), Expect = 2e-15 Identities = 57/169 (33%), Positives = 85/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 159 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKR 218 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D D I+ E Sbjct: 219 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME-------- 265 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 266 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 300 [178][TOP] >UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1 Tax=Suberites fuscus RepID=Q2N162_9METZ Length = 260 Score = 85.9 bits (211), Expect = 2e-15 Identities = 53/157 (33%), Positives = 81/157 (51%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + D+ + L EW QL +DR+ +R VF TG +K+ L VN+ RLIWNA++IF V Sbjct: 87 VRDLLTSSTAQTELESEWQQLCQDREIVR-SVFPTGNSKIVLPVNLNRLIWNAQKIFHVD 145 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 ++DL P K+V V L ++ ++ ++ ELS Sbjct: 146 IRGQTDLHPLKVVEGVRDLSNKLIIVQGED---------------------------ELS 178 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + AQ NATLLF+ +R+ L +K + EH+L +AF W Sbjct: 179 KQAQTNATLLFKSLLRSVLCTKKMSEEHKLNLEAFEW 215 [179][TOP] >UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina RepID=Q17085_ARTSA Length = 1341 Score = 85.9 bits (211), Expect = 2e-15 Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSG----GDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 + SN L + D+ +V + KEW L KDR+ LR +VF +GE K+ L Sbjct: 835 DPSNERQLRKTFTEDVTKSLLGDSEVITEIEKEWEALVKDREALR-KVFPSGENKVVLPC 893 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R+IWNA++ F + + SDLSP ++++ V LL + V+ + ED Sbjct: 894 NLQRMIWNAQKTFHINKRMPSDLSPLRVIQGVRDLL-KNCVIVNGED------------- 939 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +LS+ A NATLLFQ VR++L +K + E+RL +AF W Sbjct: 940 -------------KLSKQANENATLLFQCLVRSTLCTKRLADEYRLNTEAFEW 979 [180][TOP] >UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium aggregatum RepID=Q2PYS6_9FUNG Length = 1016 Score = 85.9 bits (211), Expect = 2e-15 Identities = 56/150 (37%), Positives = 77/150 (51%) Frame = +3 Query: 87 SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRS 266 S G L +E+ QL+KDR+ LR +FK G + PL VN++RLIWNA+ F+V + Sbjct: 864 SDGLTQNRLDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWNAQNQFEVGPRKPT 923 Query: 267 DLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 446 DL P I VE LL + V+ ++ LS AQ Sbjct: 924 DLHPLHITESVEQLLDKLVVVRGND---------------------------PLSVEAQK 956 Query: 447 NATLLFQVHVRASLASKVVLSEHRLTRKAF 536 NATLLFQ+ VR++LA++ VL E L K+F Sbjct: 957 NATLLFQILVRSTLATRRVLEEFHLNSKSF 986 [181][TOP] >UniRef100_Q1ACU4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Gunnera chilensis RepID=Q1ACU4_GUNCH Length = 240 Score = 85.5 bits (210), Expect = 2e-15 Identities = 55/169 (32%), Positives = 85/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S AQ NATL F + +R++ ASK VL+E+RLTR+AF W Sbjct: 176 ---------LMSMEAQKNATLFFNILLRSTFASKRVLNEYRLTREAFEW 215 [182][TOP] >UniRef100_C0JPA2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichoplax adhaerens RepID=C0JPA2_TRIAD Length = 625 Score = 85.5 bits (210), Expect = 2e-15 Identities = 57/163 (34%), Positives = 83/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 YL + I + +V E L E+ QL KDR+ +R + + G++++ L VN+ RLIWNA+ Sbjct: 460 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 518 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF V SDL P K++ V L R V+ ED Sbjct: 519 KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED----------------------- 554 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLLF + +R+ L+SK V E+ LT +AF W Sbjct: 555 ---RISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDW 594 [183][TOP] >UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3RM26_TRIAD Length = 1784 Score = 85.5 bits (210), Expect = 2e-15 Identities = 57/163 (34%), Positives = 83/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 YL + I + +V E L E+ QL KDR+ +R + + G++++ L VN+ RLIWNA+ Sbjct: 921 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 979 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF V SDL P K++ V L R V+ ED Sbjct: 980 KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED----------------------- 1015 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLLF + +R+ L+SK V E+ LT +AF W Sbjct: 1016 ---RISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDW 1055 [184][TOP] >UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai RepID=A9QMF9_9BILA Length = 618 Score = 85.5 bits (210), Expect = 2e-15 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 2/171 (1%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHS--GGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 E + + ++ ++D+ D E + EWAQL++DR LR ++F TG AK+ L N+ Sbjct: 125 EKTMKKFFTEDVIHDLQGPDSKDAIETVEAEWAQLEEDRRLLR-KIFPTGNAKVVLPCNL 183 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +RLIWN ++IF V + L+P K++ V+ L + +++ D+ Sbjct: 184 QRLIWNXQKIFRVETRKPTSLNPLKVISGVQELSKKLIIVSGDD---------------- 227 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + S ++L +AF W Sbjct: 228 -----------SISKQAQYNATLLMNILLRSTLCSKRMASMYKLNSEAFEW 267 [185][TOP] >UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis RepID=A9QMF5_9BILA Length = 630 Score = 85.5 bits (210), Expect = 2e-15 Identities = 50/161 (31%), Positives = 83/161 (51%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ + D+ S D + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 136 TEEVIRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 194 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F V +DL P +++ V + + ++ ED Sbjct: 195 FHVETRKPTDLHPLRVIEGVRDMAKKL-IIVGGED------------------------- 228 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + VR++L SK + ++L +AF W Sbjct: 229 -RISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEW 268 [186][TOP] >UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum RepID=Q2PYS1_9FUNG Length = 1015 Score = 85.5 bits (210), Expect = 2e-15 Identities = 51/157 (32%), Positives = 80/157 (50%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 L D+ +L +E+ QL DR LR +F +G+ PL N++RL+WNA+ IF + Sbjct: 858 LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWNAQNIFHID 917 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + S+L P +I+ V+LL+ R V+ + +LS Sbjct: 918 KRKPSNLHPLQIIEGVKLLIDRLVVVRGSD---------------------------KLS 950 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQLNATLL+Q +R++L++K VL + L +AF W Sbjct: 951 NEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEW 987 [187][TOP] >UniRef100_Q2PYQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endogone pisiformis RepID=Q2PYQ9_9FUNG Length = 845 Score = 85.5 bits (210), Expect = 2e-15 Identities = 56/154 (36%), Positives = 82/154 (53%) Frame = +3 Query: 81 IHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQND 260 I DV LL +E+ QL++DRD L +FKTG+ K PL N++RLI NA++IF + + Sbjct: 691 IEGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLITNAQQIFHIDRRK 750 Query: 261 RSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETA 440 SDL+P I+ V L + E+L GS ++S A Sbjct: 751 PSDLNPVNIIEGVRKL------------------SEELLVVRGS---------DKISVEA 783 Query: 441 QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 Q NATLL+Q+ +R++ ++K VL E L AFT+ Sbjct: 784 QRNATLLYQILLRSTFSTKRVLEEFHLNSAAFTY 817 [188][TOP] >UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 8 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1C Length = 1719 Score = 85.1 bits (209), Expect = 3e-15 Identities = 50/157 (31%), Positives = 83/157 (52%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + Sbjct: 933 VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 SDL P K+V V+ L + ++ D+ LS Sbjct: 992 PRLPSDLHPIKVVEGVKELSKKLVIVNGDD---------------------------PLS 1024 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1025 RQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1061 [189][TOP] >UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A isoform 7 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1B Length = 1858 Score = 85.1 bits (209), Expect = 3e-15 Identities = 50/157 (31%), Positives = 83/157 (52%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++IF + Sbjct: 933 VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 SDL P K+V V+ L + ++ D+ LS Sbjct: 992 PRLPSDLHPIKVVEGVKELSKKLVIVNGDD---------------------------PLS 1024 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1025 RQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1061 [190][TOP] >UniRef100_Q71ET6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Magnolia x soulangeana RepID=Q71ET6_MAGSO Length = 1010 Score = 85.1 bits (209), Expect = 3e-15 Identities = 55/166 (33%), Positives = 82/166 (49%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW Sbjct: 844 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 904 NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 943 ------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 982 [191][TOP] >UniRef100_Q1L5Y6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1L5Y6_SOLLC Length = 773 Score = 85.1 bits (209), Expect = 3e-15 Identities = 55/166 (33%), Positives = 83/166 (50%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ A+ D+ ++ + E +L+ DR L E+ TG+ PL VNI+RL+ Sbjct: 602 NPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVL 661 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F + SD+ P +IV V+ L R +V+ D+ Sbjct: 662 NAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 700 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++LASK VL E+RL+R+AF W Sbjct: 701 ------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEW 740 [192][TOP] >UniRef100_Q1ACT7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia integrifolia RepID=Q1ACT7_MACIN Length = 240 Score = 85.1 bits (209), Expect = 3e-15 Identities = 56/169 (33%), Positives = 83/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 ES N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ESWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL + +R++ ASK VL E+RLTR+AF W Sbjct: 176 ---------FLSMEAQKNATLFLNILLRSTFASKRVLKEYRLTREAFEW 215 [193][TOP] >UniRef100_Q1ACT6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia integrifolia RepID=Q1ACT6_MACIN Length = 240 Score = 85.1 bits (209), Expect = 3e-15 Identities = 56/169 (33%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ TGE P+ VN++R Sbjct: 74 ENWNPNYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F + SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKLDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF + +R++ ASK VL E+ LTR+AF W Sbjct: 176 ---------FLSTEAQKNATLLFNILLRSTFASKRVLKEYGLTREAFDW 215 [194][TOP] >UniRef100_B7SNX0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Liriodendron tulipifera RepID=B7SNX0_LIRTU Length = 1010 Score = 85.1 bits (209), Expect = 3e-15 Identities = 55/166 (33%), Positives = 82/166 (49%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW Sbjct: 844 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 904 NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 943 ------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 982 [195][TOP] >UniRef100_B7SNW9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Illicium parviflorum RepID=B7SNW9_ILLPA Length = 1013 Score = 85.1 bits (209), Expect = 3e-15 Identities = 55/166 (33%), Positives = 82/166 (49%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW Sbjct: 847 NPSYMLPEHVKDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIW 906 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 907 NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 945 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 946 ------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985 [196][TOP] >UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura RepID=Q9XZU9_DROSU Length = 1889 Score = 85.1 bits (209), Expect = 3e-15 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + + ++ + + L EW L DRD LR +F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T + Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [197][TOP] >UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche RepID=Q9XZS1_DROGU Length = 1889 Score = 85.1 bits (209), Expect = 3e-15 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%) Frame = +3 Query: 42 SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209 SN Y+ + + ++ + + L EW L DRD LR +F G++K+ L N+ Sbjct: 917 SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975 Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389 +R+IWN ++IF + + +DLSP ++++ V+ LL R ++T + Sbjct: 976 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019 Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLLFQ +R++L +K V E RL+ +AF W Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059 [198][TOP] >UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium vulgare RepID=Q9NJN3_ARMVU Length = 433 Score = 85.1 bits (209), Expect = 3e-15 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%) Frame = +3 Query: 21 DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 188 D + + +N YL ++ + ++ + +L EW +L++DR LR +VF G+ K Sbjct: 75 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 133 Query: 189 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAR 368 + L N+ER+IWN ++IF + + ++DLSP K+V V L + +++ ++ Sbjct: 134 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGED--------- 184 Query: 369 EMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S A NATLLF VR++L +K V E+RLT +AF W Sbjct: 185 ------------------RISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNW 224 [199][TOP] >UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium vulgare RepID=Q6JU60_ARMVU Length = 736 Score = 85.1 bits (209), Expect = 3e-15 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%) Frame = +3 Query: 21 DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 188 D + + +N YL ++ + ++ + +L EW +L++DR LR +VF G+ K Sbjct: 378 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 436 Query: 189 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAR 368 + L N+ER+IWN ++IF + + ++DLSP K+V V L + +++ ++ Sbjct: 437 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGED--------- 487 Query: 369 EMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S A NATLLF VR++L +K V E+RLT +AF W Sbjct: 488 ------------------RISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNW 527 [200][TOP] >UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum RepID=A1YIB6_9FUNG Length = 1018 Score = 85.1 bits (209), Expect = 3e-15 Identities = 51/157 (32%), Positives = 79/157 (50%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 L D+ +L +E+ QL DR LR +F +G+ PL N+ RL+WNA+ IF + Sbjct: 856 LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWNAQNIFHID 915 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + S+L P +I+ V+LL+ R V+ + +LS Sbjct: 916 KRKPSNLHPLQIIEGVKLLIDRLIVVRGSD---------------------------KLS 948 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQLNATLL+Q +R++L++K VL + L +AF W Sbjct: 949 NEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEW 985 [201][TOP] >UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis domestica RepID=UPI0000F2BF13 Length = 1932 Score = 84.7 bits (208), Expect = 4e-15 Identities = 53/162 (32%), Positives = 86/162 (53%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + V+ + ED Sbjct: 993 IFHINPRLPSDLHPIKVVDGVK-ELSKKLVIVNGED------------------------ 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [202][TOP] >UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis domestica RepID=UPI0000F2BF12 Length = 1970 Score = 84.7 bits (208), Expect = 4e-15 Identities = 53/162 (32%), Positives = 86/162 (53%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL P K+V V+ L + V+ + ED Sbjct: 993 IFHINPRLPSDLHPIKVVDGVK-ELSKKLVIVNGED------------------------ 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [203][TOP] >UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B1A Length = 1767 Score = 84.7 bits (208), Expect = 4e-15 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 2/164 (1%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV--NIERLIWNA 230 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+P+ + N+ R+IWNA Sbjct: 920 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVPVVLPCNLLRMIWNA 978 Query: 231 KRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQD 410 ++IF + SDL P K+V V+ L + ++ D+ Sbjct: 979 QKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP---------------------- 1016 Query: 411 EALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1017 -----LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1055 [204][TOP] >UniRef100_Q1ACU8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Buxus sempervirens RepID=Q1ACU8_BUXSE Length = 240 Score = 84.7 bits (208), Expect = 4e-15 Identities = 55/169 (32%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ + Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++R Sbjct: 74 ENWSPSYMLPEHVEDLKTIREFRNVFDAEVQKLQADRFQLGTEIATTGDNNWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 176 ---------FLSTEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215 [205][TOP] >UniRef100_Q1ACS5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tetracentron sinense RepID=Q1ACS5_9MAGN Length = 240 Score = 84.7 bits (208), Expect = 4e-15 Identities = 55/169 (32%), Positives = 83/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L DR L E+ TG+ P+ VN++R Sbjct: 74 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLAADRCQLGTEIATTGDNSWPMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 176 ---------LMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215 [206][TOP] >UniRef100_Q1ACS3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis piasezkii RepID=Q1ACS3_9MAGN Length = 240 Score = 84.7 bits (208), Expect = 4e-15 Identities = 55/169 (32%), Positives = 88/169 (52%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR+ L E+ TG++ + VN++R Sbjct: 74 ENWNPNYMFREHAEDLKTIQEFRNVFDAEVQKLEADRNQLGTEIASTGDSFWSMPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F + SD+ P +IV V+ L R +V+ D D I+ E Sbjct: 134 LIWNAQKTFKIDLRRSSDMHPMEIVETVDKLQERLKVVPGD-----DLISME-------- 180 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATLLF + +R++ ASK VL+E+RL+R+AF W Sbjct: 181 --------------AQKNATLLFNILLRSTFASKRVLNEYRLSREAFDW 215 [207][TOP] >UniRef100_B7SNW7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ceratophyllum demersum RepID=B7SNW7_CERDE Length = 1010 Score = 84.7 bits (208), Expect = 4e-15 Identities = 55/166 (33%), Positives = 81/166 (48%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW Sbjct: 844 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 904 NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R + ASK VL E+RLTR+AF W Sbjct: 943 ------FLSMEAQKNATLFFNILLRTTFASKRVLKEYRLTREAFEW 982 [208][TOP] >UniRef100_B7SNW6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Beta vulgaris RepID=B7SNW6_BETVU Length = 1012 Score = 84.7 bits (208), Expect = 4e-15 Identities = 55/166 (33%), Positives = 81/166 (48%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW Sbjct: 846 NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 905 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 906 NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 944 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R + ASK VL E+RLTR+AF W Sbjct: 945 ------FLSMEAQKNATLFFNILLRTTFASKRVLKEYRLTREAFEW 984 [209][TOP] >UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7Q3C6_ANOGA Length = 1878 Score = 84.7 bits (208), Expect = 4e-15 Identities = 49/161 (30%), Positives = 83/161 (51%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ + ++ V + + E+ QL +DR+ LR ++F G++K+ L N++R+IWN ++I Sbjct: 925 NEDVIKELTETSSVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F + + +DLSP K+++ V LL R ++ + Sbjct: 984 FHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTD-------------------------- 1017 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ A NATLLFQ VR++L +K V E RL +AF W Sbjct: 1018 -RLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEW 1057 [210][TOP] >UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis RepID=A9QMP7_9BILA Length = 440 Score = 84.7 bits (208), Expect = 4e-15 Identities = 50/157 (31%), Positives = 81/157 (51%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + D+ S D + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++IF V Sbjct: 103 IRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVE 161 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 +DL P +++ V + + ++ ED +S Sbjct: 162 TRKPTDLHPLRVIEGVRDMAKKL-IIVGGED--------------------------RIS 194 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + AQ NATLL + VR++L SK + ++L +AF W Sbjct: 195 KQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEW 231 [211][TOP] >UniRef100_A9QMP1 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis mediterranea RepID=A9QMP1_9PELO Length = 276 Score = 84.7 bits (208), Expect = 4e-15 Identities = 46/161 (28%), Positives = 83/161 (51%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ + D+ + + + +EW QL+ DR LR ++F TG+AK+ L N++RLIWNA++I Sbjct: 127 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 185 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F V +DLSP +++ V + + ++ ++ Sbjct: 186 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED-------------------------- 219 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + ++L +AF W Sbjct: 220 -RISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEW 259 [212][TOP] >UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis mediterranea RepID=A9QME7_9PELO Length = 618 Score = 84.7 bits (208), Expect = 4e-15 Identities = 46/161 (28%), Positives = 83/161 (51%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ + D+ + + + +EW QL+ DR LR ++F TG+AK+ L N++RLIWNA++I Sbjct: 141 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 199 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F V +DLSP +++ V + + ++ ++ Sbjct: 200 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED-------------------------- 233 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + ++L +AF W Sbjct: 234 -RISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEW 273 [213][TOP] >UniRef100_Q71EU1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zamia muricata RepID=Q71EU1_9SPER Length = 1013 Score = 84.3 bits (207), Expect = 5e-15 Identities = 52/169 (30%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ +G+ P+ VN++R Sbjct: 844 ENWNPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKR 903 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F + SD+ P +IV V+ L R +V+ D+ ++ Sbjct: 904 LIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------- 950 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 951 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985 [214][TOP] >UniRef100_Q71ET5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nymphaea odorata RepID=Q71ET5_NYMOD Length = 1013 Score = 84.3 bits (207), Expect = 5e-15 Identities = 56/169 (33%), Positives = 86/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ + YL + D+ + ++ ++ E +L+ DR L E+ TG+ P+ VN++R Sbjct: 844 ENWDPSYLQPDFVEDLKTIKELQDVFHAEVQKLETDRRQLATEIATTGDNSWPMPVNLKR 903 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F V SD+ P +IV V+ L R +V+ EDA Sbjct: 904 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPG-EDA---------------- 946 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S AQ NATL F + +R++ ASK V E+RLTR+AF W Sbjct: 947 ----------MSMEAQKNATLFFNILLRSTFASKRVSKEYRLTREAFDW 985 [215][TOP] >UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus RepID=Q1L5Y7_ANTMA Length = 780 Score = 84.3 bits (207), Expect = 5e-15 Identities = 56/166 (33%), Positives = 82/166 (49%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ A+ D+ + ++ + E +L+ DR L + TG+ PL VNI RL+ Sbjct: 602 NPSYMLSEAVEDLKTIREIRSVFDAEVQKLEADRFQLGTGIATTGDNSWPLPVNIRRLVL 661 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F V SD+ P +IV V+ L R +V+ D+ Sbjct: 662 NAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVVGDD--------------------- 700 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++LASK VL E+RLTR+AF W Sbjct: 701 ------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEW 740 [216][TOP] >UniRef100_Q1ACT9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Iresine herbstii RepID=Q1ACT9_IREHE Length = 240 Score = 84.3 bits (207), Expect = 5e-15 Identities = 51/163 (31%), Positives = 85/163 (52%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 Y+ + ++D+ + + + E +L+ DR L ++ TG+ PL VN++RL+WNA+ Sbjct: 80 YMLKEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQ 139 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 + F V ++SD+ P +IV V+ L R +V+ ++ Sbjct: 140 KTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGED------------------------ 175 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+ AQ NATL F + +R++LASK VL E +L R+AF W Sbjct: 176 ---FLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEW 215 [217][TOP] >UniRef100_Q1ACS9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Ruschia herrei RepID=Q1ACS9_9CARY Length = 240 Score = 84.3 bits (207), Expect = 5e-15 Identities = 53/169 (31%), Positives = 85/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ Y+ + ++D+ + + + E +L+ DR L E+ TG+ PL VN++R Sbjct: 74 ENWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPLPVNLKR 133 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 L+WNA++ F V ++SD+ P +IV V+ L R +V+ D+ Sbjct: 134 LLWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E +L R+AF W Sbjct: 176 ---------FLSIEAQKNATLFFNILLRSTFASKRVLKEFKLNREAFEW 215 [218][TOP] >UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis plicata RepID=Q6E226_9PELO Length = 636 Score = 84.3 bits (207), Expect = 5e-15 Identities = 49/161 (30%), Positives = 82/161 (50%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 + + + +I D E + EWAQL++DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 144 TDSVIREIQESEDAIEKVESEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 202 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F V DLSP ++ V + + +++ ++D Sbjct: 203 FKVDTRKPVDLSPLHVIDGVREISSKLIIVSGNDD------------------------- 237 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S AQ NATLL + +R++L SK + + +L +AF W Sbjct: 238 --ISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDW 276 [219][TOP] >UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum halicti RepID=P90678_9BILA Length = 631 Score = 84.3 bits (207), Expect = 5e-15 Identities = 47/161 (29%), Positives = 82/161 (50%) Frame = +3 Query: 60 SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239 ++ + D+ S + + EW QL+ DR LR ++F G+AK+ L N++RLIWNA++I Sbjct: 140 TEDVIRDVQSSSESIKEAELEWMQLQDDRQLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 198 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F V +DL+P ++++ V + + ++ D+ Sbjct: 199 FHVETRKVTDLNPVRVIQGVREVSKKLIIVGGDD-------------------------- 232 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S AQ NATLL + VR++L +K + +H+L +AF W Sbjct: 233 -RISVQAQYNATLLMNILVRSTLCAKAMAEKHKLNAEAFEW 272 [220][TOP] >UniRef100_A9QMQ0 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus RepID=A9QMQ0_PRIPA Length = 181 Score = 84.3 bits (207), Expect = 5e-15 Identities = 49/141 (34%), Positives = 75/141 (53%) Frame = +3 Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299 EW QL++DR+ LR +F G+AK+ L N++RLIWNA++IF V +DLSP +++ V Sbjct: 57 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 115 Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479 + + ++ ED +S+ AQ NATLL + VR Sbjct: 116 R-EVSKKLIIVGGED--------------------------RISKQAQYNATLLMNILVR 148 Query: 480 ASLASKVVLSEHRLTRKAFTW 542 ++L SK + +HRL +AF W Sbjct: 149 STLCSKQLAEKHRLNSEAFEW 169 [221][TOP] >UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus RepID=A9QMF6_PRIPA Length = 583 Score = 84.3 bits (207), Expect = 5e-15 Identities = 49/141 (34%), Positives = 75/141 (53%) Frame = +3 Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299 EW QL++DR+ LR +F G+AK+ L N++RLIWNA++IF V +DLSP +++ V Sbjct: 127 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 185 Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479 + + ++ ED +S+ AQ NATLL + VR Sbjct: 186 R-EVSKKLIIVGGED--------------------------RISKQAQYNATLLMNILVR 218 Query: 480 ASLASKVVLSEHRLTRKAFTW 542 ++L SK + +HRL +AF W Sbjct: 219 STLCSKQLAEKHRLNSEAFEW 239 [222][TOP] >UniRef100_Q2PYS0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entomophthora muscae RepID=Q2PYS0_9FUNG Length = 1007 Score = 84.3 bits (207), Expect = 5e-15 Identities = 56/144 (38%), Positives = 77/144 (53%) Frame = +3 Query: 111 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 290 LA E+AQL DR+ LR+ VF +GE + P+ VNI+RLI NA+ +F + ++L PS ++ Sbjct: 863 LADEFAQLVSDRNLLRNFVFTSGENEWPMPVNIKRLIRNAQVMFHCHAHRPTNLHPSLVI 922 Query: 291 RXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 470 VE LL V+ ++ LSE A NAT+LF+V Sbjct: 923 STVERLLKGLTVIRGND---------------------------ALSEEANTNATILFKV 955 Query: 471 HVRASLASKVVLSEHRLTRKAFTW 542 VR+ LASK VL E LT +AF W Sbjct: 956 LVRSILASKRVLEEFHLTTEAFEW 979 [223][TOP] >UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q5I6_MALGO Length = 1607 Score = 84.3 bits (207), Expect = 5e-15 Identities = 52/149 (34%), Positives = 79/149 (53%) Frame = +3 Query: 96 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275 ++ +LL E+ QL+ DR LR EVF+T L +NI RL+ NA++IF + SDLS Sbjct: 728 ELEQLLEGEFEQLEADRKTLRTEVFQTDRVDTYLPLNIARLVLNAQQIFHIDPRKPSDLS 787 Query: 276 PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455 P +IV ++ +L+ V+ D+ ++S Q NAT Sbjct: 788 PFEIVDGLKRVLNNLLVVRGDD---------------------------KISRVMQENAT 820 Query: 456 LLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LLF++H+R+ L SK V+ H LTR+A+ W Sbjct: 821 LLFKIHLRSFLCSKQVIEVHHLTREAWEW 849 [224][TOP] >UniRef100_Q71ET9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q71ET9_9CONI Length = 1013 Score = 84.0 bits (206), Expect = 6e-15 Identities = 51/170 (30%), Positives = 84/170 (49%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 QE+ N Y+ + D+ + + + E +L+ DR L E+ +G+ PL VN++ Sbjct: 843 QENWNPSYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGMEIAPSGDNSWPLPVNLK 902 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWN+++ F + SD+ P +IV ++ L R +V+ D+ ++ Sbjct: 903 RLIWNSQKTFKIDARRPSDMHPMEIVEAIDRLQERLKVVPGDDLMSIE------------ 950 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+ LTR+AF W Sbjct: 951 ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTREAFEW 985 [225][TOP] >UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri RepID=Q010D7_OSTTA Length = 1673 Score = 84.0 bits (206), Expect = 6e-15 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 2/168 (1%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N +LS +D+ V E++ EW +L+KDR LR +VF TG+ + L VN++R+IW Sbjct: 921 NKGWLSNEQASDLAHSTKVREIIDAEWERLQKDRVELR-KVFPTGDPHVHLPVNMKRIIW 979 Query: 225 NAKRIFDVRQ--NDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSAS 398 NA++ + + + +LS + ++ V LL + V+ + ++A Sbjct: 980 NAQKQYGMYRPGGSEEELSVTHVIESVAELLPKLIVVAGTDPLSIEA------------- 1026 Query: 399 GPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 Q N TLLF HVRA+LA+K VL +H+LTR F W Sbjct: 1027 --------------QRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDW 1060 [226][TOP] >UniRef100_B7SNW5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asparagus officinalis RepID=B7SNW5_ASPOF Length = 1009 Score = 84.0 bits (206), Expect = 6e-15 Identities = 54/163 (33%), Positives = 82/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 Y+ + D+ + + + E +L+ DR L ++ TG+ P+ VN++RLIWNA+ Sbjct: 846 YMLPEHVEDLKTIPEFRNVFDAEVQKLEADRFQLGTDIATTGDNTWPMPVNLKRLIWNAQ 905 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 + F V SD+ P +IV V+ L + RV+ D+ Sbjct: 906 KTFKVDPRRPSDMHPMEIVEAVDKLQEKLRVVPGDD------------------------ 941 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF + +R++ ASK VL E+RLTR+AF W Sbjct: 942 ---FLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEW 981 [227][TOP] >UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta RepID=Q25203_9CAEN Length = 1343 Score = 84.0 bits (206), Expect = 6e-15 Identities = 51/162 (31%), Positives = 79/162 (48%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + + + E L EW QL DRD R +VF TG+A++ L N++R+IWNA++ Sbjct: 848 LKEDVIKGLRGEHRLIEELESEWLQLISDRDSAR-QVFSTGDARIVLPCNLQRMIWNAQK 906 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + + SDL P +V V L R ++ ++ Sbjct: 907 IFRIDKRKPSDLDPINVVSGVRDLCQRLTIVEGED------------------------- 941 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ A NATLL + +R++L +K V EHRL+ AF W Sbjct: 942 --MISKQANENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNW 981 [228][TOP] >UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres RepID=A9QMF2_9PELO Length = 629 Score = 84.0 bits (206), Expect = 6e-15 Identities = 53/174 (30%), Positives = 87/174 (50%) Frame = +3 Query: 21 DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200 DL + S Y S+ + D+ + + +EW QL++DR LR ++F GE+K+ L Sbjct: 128 DLSDERSLRRVY-SEDVVRDLLGSSSALKEVEEEWQQLEEDRRLLR-KIFPKGESKVVLP 185 Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380 N++RLIWNA++IF V + L+P ++V+ V L + ++ D+ Sbjct: 186 CNLQRLIWNAQKIFKVETRKVTALNPLRVVQGVRDLSKKLIIVMGDD------------- 232 Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + +HRL AF W Sbjct: 233 --------------RISKQAQYNATLLVNILIRSTLCSKQMSEKHRLNESAFDW 272 [229][TOP] >UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus RepID=A1YIB9_ALLMA Length = 1008 Score = 84.0 bits (206), Expect = 6e-15 Identities = 51/149 (34%), Positives = 82/149 (55%) Frame = +3 Query: 96 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275 +V +LL +E+ QL++DR+ LRH +F G+A+ PL NI+R+IWNA+ +F + + S+L Sbjct: 855 EVQQLLDQEYRQLEEDRERLRH-IFPRGDARWPLPGNIQRIIWNAQNLFKIDKTKPSNLH 913 Query: 276 PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455 P +V V L + V+ + ++S AQ NAT Sbjct: 914 PEYVVNEVRKLCDKLMVIPGTD---------------------------KISVEAQRNAT 946 Query: 456 LLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LL Q+ VR++LA+K V+ E RL ++AF + Sbjct: 947 LLSQILVRSTLATKRVIEEFRLDKRAFDY 975 [230][TOP] >UniRef100_Q2TUN6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q2TUN6_GINBI Length = 1013 Score = 83.6 bits (205), Expect = 8e-15 Identities = 52/169 (30%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + E +L+ DR L E+ +G+ P+ VN++R Sbjct: 844 ENWNPGYMLADHVEDLKTIREFRNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKR 903 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F + SD+ P +IV V+ L R +V+ D+ ++ Sbjct: 904 LIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------- 950 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 951 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985 [231][TOP] >UniRef100_B7SNX2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Papaver orientale RepID=B7SNX2_PAPOR Length = 1010 Score = 83.6 bits (205), Expect = 8e-15 Identities = 52/163 (31%), Positives = 78/163 (47%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 Y+ + D+ + + + E +L DR L E+ TG+ P+ VN+ RLIWNA+ Sbjct: 847 YMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQ 906 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 + F V SD+ P +IV ++ L R +V+ D+ Sbjct: 907 KTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVPGDD------------------------ 942 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S AQ NATL F + +R++ ASK VL EH LTR+AF W Sbjct: 943 ---SMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDW 982 [232][TOP] >UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus oxycercus RepID=A9QMS4_9BILA Length = 612 Score = 83.6 bits (205), Expect = 8e-15 Identities = 48/157 (30%), Positives = 83/157 (52%) Frame = +3 Query: 72 LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251 + +I + + + EW QLK+DR LR ++F G +K+ L NI+RLIWNA++IF V Sbjct: 144 VKEIQGNSNSMKEIDAEWEQLKEDRGLLR-KIFPKGGSKVVLPCNIQRLIWNAQKIFRVD 202 Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431 + ++LSP ++ + L + +++ D+ ++S Sbjct: 203 NRNPTELSPLYVIEAIRKLSEKLVIVSGDD---------------------------KIS 235 Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 + AQ NATLL + +R++L SK V +HRL ++AF + Sbjct: 236 QQAQYNATLLMNILIRSTLCSKQVAEKHRLNQEAFEY 272 [233][TOP] >UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus RepID=O35559_CRIGR Length = 1970 Score = 83.2 bits (204), Expect = 1e-14 Identities = 50/162 (30%), Positives = 84/162 (51%) Frame = +3 Query: 57 LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236 L + + D+ S + L +E+ ++++DR+ LR +F TG++K+ L N+ R+IWNA++ Sbjct: 934 LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992 Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416 IF + SDL K+V V+ L + ++ D+ Sbjct: 993 IFHINPRLPSDLHSIKVVEGVKELSKKLVIVNGDD------------------------- 1027 Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATLLF +H+R++L S+ + E RL+ +AF W Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067 [234][TOP] >UniRef100_Q71EU0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cycas revoluta RepID=Q71EU0_CYCRE Length = 1013 Score = 83.2 bits (204), Expect = 1e-14 Identities = 51/169 (30%), Positives = 84/169 (49%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E+ N Y+ + D+ + + + + +L+ DR L E+ +G+ P+ VN++R Sbjct: 844 ENWNPSYMLPEHVEDLKTIREFQNVFDAQVQKLEADRRQLGTEIAPSGDNSWPMPVNLKR 903 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 LIWNA++ F + SD+ P +IV V+ L R +V+ D+ ++ Sbjct: 904 LIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------- 950 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 951 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985 [235][TOP] >UniRef100_Q71ET8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Welwitschia mirabilis RepID=Q71ET8_WELMI Length = 1013 Score = 83.2 bits (204), Expect = 1e-14 Identities = 51/170 (30%), Positives = 84/170 (49%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 QE+ N Y+ + D+ + + + E L+ DR L E+ +G+ PL VN++ Sbjct: 843 QENWNPGYMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGDNSWPLPVNLK 902 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA+++F + SD+ P +I+ ++ L R +V+ ++ Sbjct: 903 RLIWNAQKLFKIDPRKASDMHPMEIIDAIDKLQERLKVVPGND----------------- 945 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NATL F + +R++ ASK VL E+ LT++AF W Sbjct: 946 ----------PLSIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFDW 985 [236][TOP] >UniRef100_Q2TUN7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Podocarpus macrophyllus RepID=Q2TUN7_9CONI Length = 1013 Score = 83.2 bits (204), Expect = 1e-14 Identities = 50/170 (29%), Positives = 84/170 (49%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 QE+ N Y+ + D+ + + + E +L+ DR L E+ +G+ P+ VN++ Sbjct: 843 QENWNPIYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGTEIAPSGDNSCPMPVNLK 902 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA++ F + SD+ P +IV ++ L R +V+ D+ ++ Sbjct: 903 RLIWNAQKTFKIDPRKPSDMHPMEIVEAIDRLQERLKVVPGDDLISIE------------ 950 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+ LT++AF W Sbjct: 951 ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEW 985 [237][TOP] >UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis drosophilae RepID=Q6E224_9PELO Length = 633 Score = 83.2 bits (204), Expect = 1e-14 Identities = 48/163 (29%), Positives = 82/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 Y S+ + D++ D E + EW QL++DR LR ++F G+AK+ L N++RL+WNA+ Sbjct: 141 YYSEDVIRDLNESEDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 199 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF V +LSP ++ V L + ++ +D Sbjct: 200 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDD----------------------- 236 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L +K + + +L +AF W Sbjct: 237 ----ISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDW 275 [238][TOP] >UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070 RepID=Q6E223_9PELO Length = 606 Score = 83.2 bits (204), Expect = 1e-14 Identities = 48/163 (29%), Positives = 82/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 Y S+ + D++ D E + EW QL++DR LR ++F G+AK+ L N++RL+WNA+ Sbjct: 125 YYSEDVIRDLNESPDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 183 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF V +LSP ++ V L + ++ +D Sbjct: 184 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDD----------------------- 220 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L +K + + +L +AF W Sbjct: 221 ----ISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDW 259 [239][TOP] >UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis RepID=Q25151_9ANNE Length = 1337 Score = 83.2 bits (204), Expect = 1e-14 Identities = 50/163 (30%), Positives = 83/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 YL + L ++ +V + E+ QL +DR +R ++F +G++K+ L N++RLIWNA+ Sbjct: 840 YLDEDILKSLNGDANVIAEVESEYKQLLEDRTAIR-QIFPSGDSKIVLPCNLQRLIWNAQ 898 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF + S+L P KI+ V L + ++ ++ Sbjct: 899 KIFRIHTRKPSNLHPVKIIEDVRELSKKFMIVKGED------------------------ 934 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS+TA NATLL + VR++L SK V+ E L+ +AF W Sbjct: 935 ---RLSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEW 974 [240][TOP] >UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis palmarum RepID=O01375_9BILA Length = 631 Score = 83.2 bits (204), Expect = 1e-14 Identities = 49/142 (34%), Positives = 76/142 (53%) Frame = +3 Query: 117 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRX 296 +EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++ Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 217 Query: 297 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 476 + L + V+ S ED +S+ AQ NATLL + + Sbjct: 218 IR-ELSKKLVIVSGED--------------------------RISKQAQYNATLLMNILI 250 Query: 477 RASLASKVVLSEHRLTRKAFTW 542 R++L SK V S H+L +AF W Sbjct: 251 RSTLCSKRVASMHKLNNEAFDW 272 [241][TOP] >UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermiformis RepID=A9QMR5_9BILA Length = 524 Score = 83.2 bits (204), Expect = 1e-14 Identities = 50/170 (29%), Positives = 88/170 (51%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 +++ N Y + + D+ + + + EW QL++DR LR ++F G++K+ L N++ Sbjct: 126 EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 183 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA++IF V ++S L+P +++ V + + V+ ED Sbjct: 184 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED---------------- 226 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + VR++L SK + ++RL +AF W Sbjct: 227 ----------RISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEW 266 [242][TOP] >UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis palmarum RepID=A9QMG6_9BILA Length = 633 Score = 83.2 bits (204), Expect = 1e-14 Identities = 49/142 (34%), Positives = 76/142 (53%) Frame = +3 Query: 117 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRX 296 +EW QL++DR LR ++F G+ K+ L N++RLIWNA++IF + +DLSP +++ Sbjct: 163 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 221 Query: 297 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 476 + L + V+ S ED +S+ AQ NATLL + + Sbjct: 222 IR-ELSKKLVIVSGED--------------------------RISKQAQYNATLLMNILI 254 Query: 477 RASLASKVVLSEHRLTRKAFTW 542 R++L SK V S H+L +AF W Sbjct: 255 RSTLCSKRVASMHKLNNEAFDW 276 [243][TOP] >UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis RepID=A9QMF4_9BILA Length = 597 Score = 83.2 bits (204), Expect = 1e-14 Identities = 50/170 (29%), Positives = 88/170 (51%) Frame = +3 Query: 33 QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212 +++ N Y + + D+ + + + EW QL++DR LR ++F G++K+ L N++ Sbjct: 94 EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 151 Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392 RLIWNA++IF V ++S L+P +++ V + + V+ ED Sbjct: 152 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED---------------- 194 Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + VR++L SK + ++RL +AF W Sbjct: 195 ----------RISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEW 234 [244][TOP] >UniRef100_Q2PYR0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Boothiomyces macroporosum RepID=Q2PYR0_9FUNG Length = 999 Score = 83.2 bits (204), Expect = 1e-14 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%) Frame = +3 Query: 63 QAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRI 239 Q+ ND+ + ++L +E+ QL KDR LR+ +FK K L VN+ERLIWNA Sbjct: 838 QSTYNDLINNPASQDILDREYNQLLKDRATLRNVIFKNSAIDKWTLPVNLERLIWNACHT 897 Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419 F + ++ +DL+P +++ V L+ V+ ++ Sbjct: 898 FGIDRSKPTDLNPLHVIKSVNELMENLLVVRGND-------------------------- 931 Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +LS AQ NATLLF + +R++LASK ++ E RL+ +AF W Sbjct: 932 -QLSIEAQKNATLLFSILLRSTLASKRLIEEFRLSTQAFDW 971 [245][TOP] >UniRef100_B7SNW8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drimys winteri RepID=B7SNW8_DRIWI Length = 1010 Score = 82.8 bits (203), Expect = 1e-14 Identities = 53/166 (31%), Positives = 81/166 (48%) Frame = +3 Query: 45 NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224 N Y+ + D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIW Sbjct: 844 NPSYMVPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGSEIATTGDNSWPMPVNLKRLIW 903 Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404 NA++ F V S + P +IV V+ L R +V+ D+ Sbjct: 904 NAQKTFKVDLRRPSGMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942 Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S AQ NATL F + +R++ ASK VL E+RLTR+AF W Sbjct: 943 ------PISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 982 [246][TOP] >UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius elegans RepID=Q6JTX1_9BILA Length = 304 Score = 82.8 bits (203), Expect = 1e-14 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 4/173 (2%) Frame = +3 Query: 36 ESSNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203 ++SN YL + +N I + V + L +E+ Q+K+DR+ +R ++F TG++++ L Sbjct: 54 QTSNERYLRRLYEPDIVNSIMTDAGVPQALEQEFEQMKRDREIIR-KIFPTGDSRVVLPC 112 Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383 N++R++WNA++IF ++ +DL P ++V + L+ + V+ ED Sbjct: 113 NLQRMVWNAQKIFHIKGRGTTDLHPVRVVEGLNELMKKL-VIVKGED------------- 158 Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 LS AQ NAT+L +R++L SK + E+ L +AF W Sbjct: 159 -------------RLSREAQENATILMNTMLRSTLCSKRMAEEYHLNTEAFEW 198 [247][TOP] >UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122 RepID=A9QMD9_9BILA Length = 595 Score = 82.8 bits (203), Expect = 1e-14 Identities = 50/163 (30%), Positives = 84/163 (51%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 + S+ + ++ + + EWAQL++DR LR ++F G+AK+ L N++RLIWNA+ Sbjct: 102 HYSEDVVRELMGSPEALREVEGEWAQLEEDRRLLR-KIFPNGDAKIVLPCNLQRLIWNAQ 160 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 +IF + +DLSP +++ V L R ++ S ED Sbjct: 161 KIFHIELRKPTDLSPLRVIEGVR-ELSRKLIIVSGED----------------------- 196 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L SK + ++L +AF W Sbjct: 197 ---RISKQAQYNATLLMNILLRSTLCSKKMGMSYKLDSEAFEW 236 [248][TOP] >UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA Length = 1943 Score = 82.8 bits (203), Expect = 1e-14 Identities = 49/169 (28%), Positives = 86/169 (50%) Frame = +3 Query: 36 ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215 E S ++ + ++ + + + EW QL++DR LR ++F G+AK+ L N++R Sbjct: 992 EKSLRKLYTENVVRELQGSAEALKEVEAEWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQR 1050 Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395 +IWNA++IF V +DL+P +++ V+ L + V+ S ED Sbjct: 1051 MIWNAQKIFRVELRKPTDLNPLRVIEGVK-ELSKKLVIVSGED----------------- 1092 Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 +S+ AQ NATLL + +R++L +K + +HRL + F W Sbjct: 1093 ---------RISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEW 1132 [249][TOP] >UniRef100_Q2PYS5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hyaloraphidium curvatum RepID=Q2PYS5_HYACU Length = 1002 Score = 82.8 bits (203), Expect = 1e-14 Identities = 55/147 (37%), Positives = 78/147 (53%) Frame = +3 Query: 96 DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275 + E + E+ QL+ DR LR ++F +GE+ PL N+ RLI NA+ F + ++DL Sbjct: 853 ETQEAVDGEFEQLENDRKVLRKDIFPSGESSWPLPGNLRRLIDNARIQFGLSDRAKTDLL 912 Query: 276 PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455 P+KIV+ V LL V+ + LS AQ NAT Sbjct: 913 PTKIVQDVRALLAECVVVPGTDG---------------------------LSRQAQANAT 945 Query: 456 LLFQVHVRASLASKVVLSEHRLTRKAF 536 LL+Q+ VR++LASK VLSE+RLT +AF Sbjct: 946 LLWQILVRSTLASKRVLSEYRLTSEAF 972 [250][TOP] >UniRef100_Q71ET7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays RepID=Q71ET7_MAIZE Length = 1009 Score = 82.4 bits (202), Expect = 2e-14 Identities = 49/163 (30%), Positives = 82/163 (50%) Frame = +3 Query: 54 YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233 Y+ ++D+ + + + E +L+ DR L E+ TG+ P+ VN++RLIWNA+ Sbjct: 846 YMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQ 905 Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413 + F + SD+ P +IV ++ L R +V+ D+ ++ Sbjct: 906 KTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIE------------------- 946 Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542 AQ NATL F + +R++ ASK VL E+RLT++AF W Sbjct: 947 --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 981