AU193184 ( PFL041f06_r )

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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
            RepID=O04142_PORYE
          Length = 1685

 Score =  251 bits (641), Expect = 2e-65
 Identities = 143/186 (76%), Positives = 148/186 (79%), Gaps = 6/186 (3%)
 Frame = +3

Query: 3    YHLTEPDLHLQESSNSPYLSQAALNDIHSG----GDVTELL--AKEWAQLKKDRDFLRHE 164
            YHLTEPDLHLQ       L          G    G V++ +  A+E  +L   R F    
Sbjct: 827  YHLTEPDLHLQGVVQFSVLVAGGSQRYPLGRRRRGAVSQGVGTAEEGPRLPTPRGF---- 882

Query: 165  VFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDED 344
              KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVR VELLLHRTRVLTSDED
Sbjct: 883  --KTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDED 940

Query: 345  AEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLT 524
            AEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLT
Sbjct: 941  AEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLT 1000

Query: 525  RKAFTW 542
            RKAFTW
Sbjct: 1001 RKAFTW 1006

[2][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score =  125 bits (314), Expect = 2e-27
 Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 14/192 (7%)
 Frame = +3

Query: 3    YHLTEPDLHLQESSNS-PYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
            +HL   DL      N   YL+Q  ++D+ +   + + L  E+AQ+K DRD L+ E+ ++ 
Sbjct: 885  FHLDPFDLDFGIGENRRSYLAQEVIDDVRNDPQLIKALEDEFAQIKLDRDRLQREIIRSR 944

Query: 180  EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLT--------- 332
            E+K PLAVNI+RLIWN K +F++RQ+  SDL+P  I++ V++LL R  V+          
Sbjct: 945  ESKWPLAVNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGVQILLSRCNVVALPPKSIKLL 1004

Query: 333  ----SDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKV 500
                 D+ AEVD                 +   ++L+  AQ NATLL+ +H+RA LASKV
Sbjct: 1005 DEGDGDQVAEVDT----------------NSVSRQLAVEAQENATLLWSIHIRAFLASKV 1048

Query: 501  VLSEHRLTRKAF 536
            +L E+RL +KAF
Sbjct: 1049 ILKEYRLDKKAF 1060

[3][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
            RepID=O09451_9FLOR
          Length = 1732

 Score =  124 bits (312), Expect = 3e-27
 Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 3/173 (1%)
 Frame = +3

Query: 33   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
            Q+    PYL    +  +     +   L  E+ Q++ DR  LR  + KTGE+K PLAVN++
Sbjct: 820  QDEKGRPYLDPNIVERVRQDAALHVELRLEFQQIEADRKLLRDYIIKTGESKRPLAVNVD 879

Query: 213  RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
            R+IWNAK+  ++  +  SDL P ++++ V +LL RTRVL   ++A ++  A E    +  
Sbjct: 880  RVIWNAKQEHNIHADSVSDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPGMEEDD 939

Query: 393  ASGPQDE---ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               P DE    +  L + AQ NATLLFQ+H+R+ LA K ++  HRLT KAF W
Sbjct: 940  EGNPIDEKPTMVDPLMKEAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLW 992

[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
            uvarioides RepID=Q9AXN1_9FLOR
          Length = 1712

 Score =  119 bits (299), Expect = 1e-25
 Identities = 66/181 (36%), Positives = 106/181 (58%), Gaps = 1/181 (0%)
 Frame = +3

Query: 3    YHLTEPDLHL-QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
            Y+L   D    ++S   PYL     + I        LL  E+ ++++DRD LR+ + K+G
Sbjct: 810  YYLDPTDAKFGKDSRGRPYLDWETCDSIRQDAQAHILLRNEFQRIREDRDLLRNFIAKSG 869

Query: 180  EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359
            EAK P+AVNI+R+IWNAK+  ++R +  SDL+P ++ + +++LL RTRV+   +D + + 
Sbjct: 870  EAKRPMAVNIDRIIWNAKQAHNIRPDSVSDLTPVQVWKGIKMLLKRTRVVEIGDDQDDED 929

Query: 360  IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539
            +   +   +G     +  A   L+   Q NAT++FQ+HVR+ LA K V+  HRL   AF 
Sbjct: 930  VDDGVTDENGEMIDRKPVA-DPLTLETQENATMIFQIHVRSMLACKQVMVRHRLDINAFL 988

Query: 540  W 542
            W
Sbjct: 989  W 989

[5][TOP]
>UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei
           RepID=B4YT42_AMPLE
          Length = 562

 Score =  102 bits (254), Expect = 2e-20
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL    ++  L  +   GDV   L +EW QL KDR+ LR ++F TGE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLSKDREALR-QIFPTGESKVVLPC 443

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  ++  D+              
Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD-------------- 489

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS  A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 490 -------------RLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529

[6][TOP]
>UniRef100_B4YT35 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tenomerga cinerea
           RepID=B4YT35_9COLE
          Length = 553

 Score =  102 bits (253), Expect = 2e-20
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL    ++  L  +   GDV   L +EW QL KDR+ LR ++F TGE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEEILRQLMGSGDVISELEREWDQLTKDREALR-QIFPTGESKVVLPC 443

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  ++  D+              
Sbjct: 444 NLQRMIWNVQKIFHINKRATTDLSPLRVIQGVRQLLQKCIIVAGDD-------------- 489

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS  A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 490 -------------RLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529

[7][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score =  101 bits (251), Expect = 4e-20
 Identities = 57/162 (35%), Positives = 91/162 (56%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L++  L +I+S    T  + +E+ QLK DR+ LR+ +F  G  K+ L V + RLIWN+++
Sbjct: 934  LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            +F V    ++DLSP K++  ++ L  R  V+  ++                         
Sbjct: 993  MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGED------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              +LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF W
Sbjct: 1028 --KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDW 1067

[8][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score =  101 bits (251), Expect = 4e-20
 Identities = 57/162 (35%), Positives = 91/162 (56%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L++  L +I+S    T  + +E+ QLK DR+ LR+ +F  G  K+ L V + RLIWN+++
Sbjct: 935  LNEDVLRNIYSDSTTTNAIEEEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQK 993

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            +F V    ++DLSP K++  ++ L  R  V+  ++                         
Sbjct: 994  MFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGED------------------------- 1028

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              +LS+ AQLNAT+LFQ+H+R++L SK V+ E RLT +AF W
Sbjct: 1029 --KLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDW 1068

[9][TOP]
>UniRef100_O02475 DNA-directed RNA polymerase (Fragment) n=1 Tax=Triops longicaudatus
           RepID=O02475_9CRUS
          Length = 543

 Score =  100 bits (250), Expect = 5e-20
 Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL    S+    D+ + G+V   L  EW QL +DRD LR ++F TGE K+ L  
Sbjct: 383 DPSNERYLRRIFSEDVTRDLMTSGEVISELDAEWEQLSRDRDALR-QIFPTGENKVVLPC 441

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++V+ V  LL +  V+  ++              
Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLSPVRVVQGVRDLLEKCVVVKGED-------------- 487

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +LS+ A +NATLLFQ  VR++L +K V  E+RL+ +AF W
Sbjct: 488 -------------KLSKQANMNATLLFQCLVRSTLCTKRVAEEYRLSSEAFEW 527

[10][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
            RepID=UPI0000D5670C
          Length = 2007

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36   ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
            + SN  YL    ++  + D+   G+V   L  EW QL+KDR+ LR ++F +GE+K+ L  
Sbjct: 919  DPSNERYLRRVFTEEVIKDLMGSGEVISELETEWEQLQKDREALR-QIFPSGESKVVLPC 977

Query: 204  NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
            N++R+IWN ++IF + +   +DLSP ++++ V  LL++  V+ + ED             
Sbjct: 978  NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLNKC-VIVAGED------------- 1023

Query: 384  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF W
Sbjct: 1024 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEW 1063

[11][TOP]
>UniRef100_O02459 DNA-directed RNA polymerase (Fragment) n=1 Tax=Periplaneta
           americana RepID=O02459_PERAM
          Length = 468

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + +N  YL    ++  L ++   GDV   L KEW QL KDR+ LR ++F +GE+K+ L  
Sbjct: 308 DPTNERYLRRIFNEDILKELMGSGDVISELEKEWEQLVKDREALR-QIFPSGESKVVLPC 366

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  ++  D+              
Sbjct: 367 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVSDLLKKCIIVAGDD-------------- 412

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF W
Sbjct: 413 -------------HLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEW 452

[12][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
            RepID=Q84KP6_CYAME
          Length = 1819

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 63/163 (38%), Positives = 85/163 (52%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            Y+    ++ + +  +V   L +E+ QL  DR+ L   VF TGEAK PL VN++RLI N +
Sbjct: 924  YIEPDLIDAVRTDPEVALELEEEYQQLLADREQLC-AVFPTGEAKWPLMVNVQRLIQNCR 982

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
             IF ++ +  SDL P +I++ V +LL R  V+  D+                        
Sbjct: 983  SIFGIQHDTLSDLHPRQIIQGVRVLLQRCVVVPGDD------------------------ 1018

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               ELS  AQ NA LLF  HVRA LA+K VL  HRL  KAF W
Sbjct: 1019 ---ELSREAQRNAVLLFAAHVRAELATKRVLQIHRLNSKAFAW 1058

[13][TOP]
>UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense
           RepID=B4YT44_9CARA
          Length = 562

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL    ++  +  +   GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEEIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 490 -------------RLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529

[14][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179348F
          Length = 1862

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 59/161 (36%), Positives = 87/161 (54%)
 Frame = +3

Query: 60   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
            ++  L D+    D    L KEW QL  DRD LR E+F +GE+K+ L  N++R+IWN ++I
Sbjct: 928  TEDVLKDMMGSNDTVAELEKEWEQLTNDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986

Query: 240  FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
            F + +   +DL+P K+V  V+ LL +  V+ + ED                         
Sbjct: 987  FHINKRGPTDLNPIKVVNGVKKLLDKC-VIVAGED------------------------- 1020

Query: 420  KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             ELS+ A  NATLLFQ  VR++L +K+V    RL+ +AF W
Sbjct: 1021 -ELSKKANKNATLLFQCLVRSTLCTKLVSENFRLSSEAFEW 1060

[15][TOP]
>UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus
           complex RepID=B4YT54_9CARA
          Length = 473

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 296 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 354

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 355 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 400

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 401 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 440

[16][TOP]
>UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion
           mandibulare RepID=B4YT49_9CARA
          Length = 562

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529

[17][TOP]
>UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion
           RepID=B4YT46_9CARA
          Length = 562

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529

[18][TOP]
>UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii
           RepID=B4YT45_9CARA
          Length = 227

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKYVSEEFRLSTEAFEW 194

[19][TOP]
>UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus
           RepID=B3FA71_9CARA
          Length = 227

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194

[20][TOP]
>UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           coxendix RepID=B3FA50_9CARA
          Length = 225

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 48  DPSNERYLRRIFNEDIIKQLMGSGDVXSELEREWEQLSRDREALR-QIFPSGESKVVLPC 106

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 107 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 152

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 153 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 192

[21][TOP]
>UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion
           RepID=B3FA43_9CARA
          Length = 227

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194

[22][TOP]
>UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus
           RepID=B4YT40_9COLE
          Length = 562

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI        DV   L +EW QL KDR+ LR ++F +GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSADVISELEREWEQLVKDRETLR-QIFPSGESKVVLPC 443

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +  ++DLSP ++++ V  LL +  ++  D+              
Sbjct: 444 NLQRMIWNVQKIFHINKRAQTDLSPLRVIQGVRDLLQKCVIVAGDD-------------- 489

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529

[23][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
            replicatum RepID=Q2PYS3_9FUNG
          Length = 981

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
 Frame = +3

Query: 72   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRIFDV 248
            + D+    +V ELL  E+ QL +DR  LR E+F    +  LPL VN++R+IW A+++FD 
Sbjct: 825  VKDVMESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRVIWKAQKLFDR 884

Query: 249  RQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKEL 428
            R+  +SDL P  I++ V+ LL RT V+   +                           EL
Sbjct: 885  RK--QSDLHPRHIIKSVQELLERTVVIRGKD---------------------------EL 915

Query: 429  SETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
            S  AQ NATLLFQ+ VR++LA++ VL E RL R+AF W
Sbjct: 916  SVEAQANATLLFQILVRSTLATRRVLEEFRLDRRAFDW 953

[24][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
          Length = 1422

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
            + +N  YL +    DI       G+V   L +EW QL KDR  LR E+F +GE+K+ L  
Sbjct: 915  DPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAVLR-EIFPSGESKVVLPC 973

Query: 204  NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
            N++R+IWN ++IF + +   +DLSP K+++ V+ LL +  ++  D+              
Sbjct: 974  NLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKCIIVAGDD-------------- 1019

Query: 384  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF W
Sbjct: 1020 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEW 1059

[25][TOP]
>UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus
           melanarius RepID=B4YT39_PTEME
          Length = 227

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLTRDREALR-QIFPSGESKVVLPC 108

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLKKC-VIVAGED------------- 154

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 155 -------------RLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194

[26][TOP]
>UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi
           RepID=B4YT37_9CARA
          Length = 369

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 192 DPSNERYLRRIFNEDIIRQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 250

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  ++   +              
Sbjct: 251 NLQRMIWNVQKIFHINKRAPTDLSPIRVIQGVRDLLQKCVIVAGKD-------------- 296

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LSE A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 297 -------------RLSEQANENATLLFQCLVRATLCTKCVSEEFRLSSEAFEW 336

[27][TOP]
>UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus
           opacus RepID=B4YT36_9COLE
          Length = 629

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIH----SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    D+       G+V   L +EW QL+KDR+ LR ++F +GE+K+ L  
Sbjct: 452 DPSNERYLRRIFNEDVSRQLMGSGEVISELEREWEQLQKDREALR-QIFPSGESKVVLPC 510

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  ++  D+              
Sbjct: 511 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLKKCIIVAGDD-------------- 556

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF W
Sbjct: 557 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEW 596

[28][TOP]
>UniRef100_Q9NJJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tomocerus sp.
           jcrjws1 RepID=Q9NJJ2_9HEXA
          Length = 543

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + +N  YL    ++  + DI   G+V   + KEW  L+KDR  LR ++F TGE K+ L  
Sbjct: 383 DPTNERYLRRVFTEDVMRDIMGSGEVISAIEKEWEALQKDRAVLR-QIFPTGENKVVLPC 441

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DL+P +++  VE LL +  ++  ++              
Sbjct: 442 NLQRMIWNVQKIFHINKRAPTDLNPVRVIEGVEDLLKKCVIVVGED-------------- 487

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF W
Sbjct: 488 -------------RLSKQANANATLLFQCLVRSTLCTKRVAEEFRLSSEAFEW 527

[29][TOP]
>UniRef100_B4YT41 DNA-directed RNA polymerase (Fragment) n=1 Tax=Macrogyrus oblongus
           RepID=B4YT41_9COLE
          Length = 554

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L  EW QL++DR+ LR ++F  GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEDIIRQLMGSGDVISELELEWEQLRRDREALR-QIFPNGESKVVLPC 443

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL R  V+ + ED             
Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRC-VIVAGED------------- 489

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VR++L +K V  E RL+ +AF W
Sbjct: 490 -------------RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEW 529

[30][TOP]
>UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           levettei RepID=B3FA52_9CARA
          Length = 226

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 49  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 107

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 108 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 153

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+    NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 154 -------------RLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 193

[31][TOP]
>UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           bifossulatum RepID=B3FA46_9CARA
          Length = 227

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 108

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+    NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 155 -------------RLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194

[32][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
            RepID=UPI000186D846
          Length = 1885

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36   ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
            +++N  YL    ++  L ++   G+V   L KEW QL+KDR+ LR ++F +GE K+ L  
Sbjct: 908  DATNERYLRRIFNENILKELMGSGEVISYLEKEWDQLQKDREALR-QIFPSGENKVVLPC 966

Query: 204  NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
            N++R+IWN ++IF + +   +DLSP +++  V  LL +  V+ + ED             
Sbjct: 967  NLQRMIWNVQKIFHINKRAPTDLSPLRVIEGVRDLLQKC-VIVAGED------------- 1012

Query: 384  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          LS+ A  NATLLFQ  VR++L +K V  + RL+ +AF W
Sbjct: 1013 -------------HLSKQANENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEW 1052

[33][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
            RepID=Q30BD8_CYAPA
          Length = 1000

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 59/163 (36%), Positives = 86/163 (52%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            +L      +I     +   L KE+ QL KDR+ LR E+ ++GE  + L VN++RLIWNA+
Sbjct: 830  FLDPDVAAEIRGSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQ 889

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            +I+ V  +  SDL P  I++ VELL  +  V+  ++                        
Sbjct: 890  KIYKVDTSKPSDLRPDIILQGVELLSTQLVVIAGED------------------------ 925

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                LS  AQ NAT LF +H+RA+LA+K VLSE+RL+  A  W
Sbjct: 926  ---TLSREAQENATRLFNIHLRATLATKRVLSEYRLSAAALEW 965

[34][TOP]
>UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus
           RepID=B4YT48_9CARA
          Length = 562

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI        DV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 385 DPSNERYLRRIFNEDIIKQLMGSSDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 443

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 444 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 489

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 490 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 529

[35][TOP]
>UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium
           subgenus complex RepID=B3FA44_9CARA
          Length = 227

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L + W QL +DR+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRDREALR-QIFPSGESKVVLPC 108

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194

[36][TOP]
>UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           balli RepID=B3FA45_9CARA
          Length = 220

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L +EW QL +DR+ LR ++F +GE+K+ L  
Sbjct: 43  DPSNERYLRRIFNEDIIKQLMGSGDVISELEREWEQLSRDREALR-QIFPSGESKVVLPC 101

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 102 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 147

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +A  W
Sbjct: 148 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAXEW 187

[37][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 55/170 (32%), Positives = 95/170 (55%), Gaps = 15/170 (8%)
 Frame = +3

Query: 78   DIHSGG---------------DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
            D+H GG               ++ +LL +E+AQL+ DR+ LRHE+F++ + ++ L +N+ 
Sbjct: 914  DLHDGGFKKGTLRPGLGDWSQELQDLLDEEFAQLEFDRNLLRHEIFQSDQVQVRLPMNVA 973

Query: 213  RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
            RL+ NA++IF V     +DLSP++++  +  +L R  V+  D     D I+RE       
Sbjct: 974  RLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE------- 1021

Query: 393  ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                           AQ+NATLLF++H+R+ L SK+V+ +H + ++A+ W
Sbjct: 1022 ---------------AQMNATLLFKIHLRSYLCSKMVIEQHHINKEAWEW 1056

[38][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 59/163 (36%), Positives = 87/163 (53%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            Y+S  A  DI +  ++  +   E ++L+ DR  +  E+  TGE+  PL VN++RLIWNA+
Sbjct: 931  YMSAEAAEDIKTIQEIRNVFDAEVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQ 990

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            +IF V     SD+ P +IV  VE L  R RV+  ++                        
Sbjct: 991  KIFKVDLRKSSDMHPMEIVEAVENLQERLRVVPGND------------------------ 1026

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               ++S  AQ NATL F   +R++LASK VL ++RLTR+AF W
Sbjct: 1027 ---QISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFEW 1066

[39][TOP]
>UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus
           RepID=B4YT43_9DYTI
          Length = 562

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           ++SN  YL +    D+       GDV   L  EW QL+KDR+ LR ++F +GE+ + L  
Sbjct: 385 DASNEKYLRRVFNEDVIKLMMGSGDVISELELEWDQLQKDREALR-QIFPSGESNVVLPC 443

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL R  ++   +              
Sbjct: 444 NLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQRCIIVAGTD-------------- 489

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS  A  NATLLFQ  VR++L +K V  E+RL+ +AF W
Sbjct: 490 -------------RLSTLANDNATLLFQCLVRSTLCTKYVSEEYRLSTEAFEW 529

[40][TOP]
>UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           californicum RepID=B3FA42_9CARA
          Length = 227

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    DI       GDV   L + W QL ++R+ LR ++F +GE+K+ L  
Sbjct: 50  DPSNERYLRRIFNEDIIKQLMGSGDVISELERXWEQLSRBREALR-QIFPSGESKVVLPC 108

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP ++++ V  LL +  V+ + ED             
Sbjct: 109 NLQRMIWNVQKIFHINKRSPTDLSPIRVIQGVRDLLQKC-VIVAGED------------- 154

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLFQ  VRA+L +K V  E RL+ +AF W
Sbjct: 155 -------------RLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEW 194

[41][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 53/163 (32%), Positives = 86/163 (52%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            ++    +  + +     + L KE+ ++K DR  LR+E+  +GEA  PL VN+ RLI NA+
Sbjct: 919  WMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQ 978

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            ++F++     SDL+P+ +V  +E L+ R +++ + +  E                   DE
Sbjct: 979  KLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTE------------------DDE 1020

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                       NAT+LF + VR++ ASK VL+E RLT KAF W
Sbjct: 1021 NFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLW 1063

[42][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179338A
          Length = 1862

 Score = 94.4 bits (233), Expect = 5e-18
 Identities = 54/161 (33%), Positives = 86/161 (53%)
 Frame = +3

Query: 60   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
            ++  L D+    D    L +EW QL  DRD LR E+F +GE+K+ L  N++R+IWN ++I
Sbjct: 928  NEDVLKDLTGSNDSVTELEREWEQLTTDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKI 986

Query: 240  FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
            F + +  ++DL+P K++  V+ LL +  ++   +                          
Sbjct: 987  FHINKRGQTDLNPVKVINGVKELLDKCVIVAGGD-------------------------- 1020

Query: 420  KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             ELS+ A  NATLLFQ  VR++L +K+V    RL+ +AF W
Sbjct: 1021 -ELSKKANHNATLLFQCLVRSTLCTKLVSERFRLSSEAFEW 1060

[43][TOP]
>UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri
           RepID=Q9U5F6_EPTBU
          Length = 595

 Score = 94.4 bits (233), Expect = 5e-18
 Identities = 51/162 (31%), Positives = 87/162 (53%)
 Frame = +3

Query: 57  LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
           L +  ++++ S   +   L +E+ Q++ DR+ LR  VF TG++K+ L  N++R+IWNA++
Sbjct: 433 LHEDVVSEVMSSAHIQNCLEREFEQIRDDREVLR-AVFPTGDSKVVLPCNLQRMIWNAQK 491

Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
           IF +     +DL+P ++V  V  L  + +++  D+                         
Sbjct: 492 IFHINTRSSTDLNPLRVVEGVNDLTQKLQIVKGDD------------------------- 526

Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              +S  AQ NATLLF  HVRA+L ++ +  EHRL+ +AF W
Sbjct: 527 --PISRQAQQNATLLFNCHVRATLCTRRLAEEHRLSSEAFEW 566

[44][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QMT2_9PELO
          Length = 488

 Score = 94.4 bits (233), Expect = 5e-18
 Identities = 52/169 (30%), Positives = 90/169 (53%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E + + Y ++  + ++    +  + + KEWAQL++DR  LR ++F TG AK+ L  N++R
Sbjct: 118 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 176

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++IF V     +DL+P +++  V  L  +  +++ D+                  
Sbjct: 177 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD------------------ 218

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     +S+ AQ NATLL  + +R++L SK + S +RL  +AF W
Sbjct: 219 ---------RISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEW 258

[45][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QME0_9PELO
          Length = 633

 Score = 94.4 bits (233), Expect = 5e-18
 Identities = 52/169 (30%), Positives = 90/169 (53%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E + + Y ++  + ++    +  + + KEWAQL++DR  LR ++F TG AK+ L  N++R
Sbjct: 132 EKTLTKYYTEDVVRELQGSSESLKEVEKEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQR 190

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++IF V     +DL+P +++  V  L  +  +++ D+                  
Sbjct: 191 LIWNAQKIFHVETRKPTDLNPLRVIEGVRELSEKLVIVSGDD------------------ 232

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     +S+ AQ NATLL  + +R++L SK + S +RL  +AF W
Sbjct: 233 ---------RISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEW 272

[46][TOP]
>UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis
            RepID=Q2TUN5_EPHVI
          Length = 1013

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 59/170 (34%), Positives = 87/170 (51%)
 Frame = +3

Query: 33   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
            QE+ +  Y+     +DI +  +  ++L  E+ +L+ DR  L  E+  TGE   PL VN++
Sbjct: 843  QENWHPTYMLPEMADDIKNISEFQDVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVNLK 902

Query: 213  RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
            RLIWNA++IF V     SD+ P +IV  ++ L  R +V+  D+                 
Sbjct: 903  RLIWNAQKIFKVDPRKTSDMQPLEIVDTIDKLQERLKVVPGDD----------------- 945

Query: 393  ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                       LS  AQ NATL F + +R+  ASK VL E+ LTR+AF W
Sbjct: 946  ----------PLSFEAQKNATLFFNILLRSVFASKRVLKEYHLTREAFDW 985

[47][TOP]
>UniRef100_O02462 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pedetontus saltator
           RepID=O02462_9INSE
          Length = 722

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + +N  YL    ++  + ++   G+V   L +EW QL+KDRD LR ++F  G+ K  L  
Sbjct: 562 DPTNERYLRRIFNEDIMKELMGSGEVISELEREWEQLQKDRDCLR-QIFPNGDNKTVLPC 620

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWN ++IF + +   +DLSP K++R V+ LL +  ++  ++              
Sbjct: 621 NLQRMIWNVQKIFHINKRATTDLSPLKVIRGVQHLLSKCIIVAGED-------------- 666

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS+ A  NATLLF+  VR++L ++ V  E RL+ +AF W
Sbjct: 667 -------------HLSKLANENATLLFRCLVRSTLCTRRVAEEFRLSSEAFEW 706

[48][TOP]
>UniRef100_B4YT34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Sialis sp. ALW-2008
           RepID=B4YT34_9NEOP
          Length = 555

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200
           +  N  YL +    +I      SGGD+ + L KEW QL KDR+ LR ++F +G+ K+ L 
Sbjct: 385 DPGNERYLRRVFTEEIVRQLMASGGDLIQALEKEWDQLVKDREALR-QIFPSGDNKVVLP 443

Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380
            N++R+IWN ++IF +     +DLSP +++  V  LL R  ++  D+             
Sbjct: 444 CNLQRMIWNVQKIFHINGRAPTDLSPLRVLDGVSELLRRCVIVAGDD------------- 490

Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          LS  A  NATLLF+  VR++L +K V  E RL+ +AF W
Sbjct: 491 --------------PLSRQANENATLLFRCLVRSTLCTKRVAEEFRLSHEAFEW 530

[49][TOP]
>UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum
           RepID=Q1ACV3_ACEPM
          Length = 240

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 54/170 (31%), Positives = 90/170 (52%)
 Frame = +3

Query: 33  QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
           Q++ N  Y+ Q  ++++ +  ++ ++   E  +L+ DR  L  E+  +G++  P+ VN++
Sbjct: 73  QDNWNPNYMLQEFIDBLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPMPVNLK 132

Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
           RLIWNA++ F V     SD+ P ++V  ++ L  R +V+  D+                 
Sbjct: 133 RLIWNAQKTFKVDPRRPSDMHPMEVVEAIDKLQERLKVVPGDD----------------- 175

Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                      LS  AQ NATL F + +R++ ASK VL EHRLTR+AF W
Sbjct: 176 ----------ALSVEAQKNATLFFNILLRSTFASKRVLQEHRLTREAFEW 215

[50][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 56/146 (38%), Positives = 78/146 (53%)
 Frame = +3

Query: 105  ELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSK 284
            ++L  E+ QL +DR+ +R+ +F+ G++  PL  NI RLIWNA+ +  +  N  S+L P +
Sbjct: 872  KVLEMEYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEE 931

Query: 285  IVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLF 464
            IVR V  LL R  V+T ++                            LS  AQ NATLLF
Sbjct: 932  IVRDVNDLLSRCIVITGEDG---------------------------LSTMAQHNATLLF 964

Query: 465  QVHVRASLASKVVLSEHRLTRKAFTW 542
             + VR  LA+K V +EHRL R AF W
Sbjct: 965  NILVRHLLATKRVYAEHRLNRNAFRW 990

[51][TOP]
>UniRef100_A9QME8 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis dudichi
           RepID=A9QME8_9BILA
          Length = 252

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
 Frame = +3

Query: 9   LTEPDLHLQESSNS---PYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
           L E D  L  S       Y     + D+    +    + +EW QL++DR  LR ++F TG
Sbjct: 93  LFEKDFKLDLSDEKMLKKYYKDEVVRDLQGSSEALNEVEEEWRQLEEDRRLLR-KIFPTG 151

Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359
           +AK+ L  N++RLIWNA++IF V     +DL+P +++  V+  L +  ++ S ED     
Sbjct: 152 DAKIVLPCNLQRLIWNAQKIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED----- 205

Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539
                                ++S+ AQ NATLL  + +R++L SK + + H+L  +AF 
Sbjct: 206 ---------------------KISKQAQYNATLLMNILIRSTLCSKKMATTHKLNAEAFE 244

Query: 540 W 542
           W
Sbjct: 245 W 245

[52][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SXC0_RICCO
          Length = 1855

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 57/169 (33%), Positives = 89/169 (52%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E+ N  Y+ Q  ++D+ +  ++ ++   E  +L+ DR  L  E+  TG++  PL VN+ R
Sbjct: 922  ENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQLGTEIATTGDSSWPLPVNLRR 981

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
            LIWNA++ F V +   SD+ P + V  V+ L  R +V+  D+                  
Sbjct: 982  LIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVPGDD------------------ 1023

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                      LS  AQ NATL F + +R++LASK VL ++RLTR+AF W
Sbjct: 1024 ---------PLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDW 1063

[53][TOP]
>UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum
            RepID=B7SNX4_PEA
          Length = 1010

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 57/169 (33%), Positives = 87/169 (51%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E+    Y+ +  + D+ +  +   +   E  +L  DR  L  E+  TG++ LPL VN++R
Sbjct: 841  ENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKR 900

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
            LIWNA++ F V     SD+ P +IV  ++ L  R RV+  D+                  
Sbjct: 901  LIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVPGDD------------------ 942

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                      LS+ AQ NATLLF + +R++ ASK VL E+RL+R+AF W
Sbjct: 943  ---------LLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEW 982

[54][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
          Length = 254

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 55/180 (30%), Positives = 92/180 (51%)
 Frame = +3

Query: 3   YHLTEPDLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGE 182
           YH +    +  E     ++S+  ++++    +      +E+A+L  DR  LR E+FK G 
Sbjct: 77  YHFS----YTNERQLKKFISEDVIHELGVNPEAQAKFEEEFARLHDDRMILR-EIFKDGN 131

Query: 183 AKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAI 362
           +K+ L  N+ R+IWNA++ F +   + SDL+P K++  VE L  +  V+   ED+     
Sbjct: 132 SKVVLPCNLSRMIWNAQKTFKINTRNNSDLNPLKVIEGVEELCKKL-VIVDGEDS----- 185

Query: 363 AREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                                +S+ AQ NATLL  +H+R++LA K V+ EH L+ +AF W
Sbjct: 186 ---------------------ISKEAQYNATLLINIHLRSTLACKRVMEEHHLSSQAFDW 224

[55][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
            RepID=Q4SF83_TETNG
          Length = 1745

 Score = 90.5 bits (223), Expect = 7e-17
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ +   V   L +E+ ++K+DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 808  LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 866

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     +DLSP ++V  +   +    +  S       +IA          SG  + +
Sbjct: 867  IFRINTRTPTDLSPLRVVEGILSSVSLNEICCSPPFTLNISIADIQFEHVFGLSGTHELS 926

Query: 417  LK--------ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             K         LS  AQ NATLLF +H+R++L SK +  E RL+ +AF W
Sbjct: 927  KKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 976

[56][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
            RepID=Q23699_CRAGI
          Length = 1340

 Score = 90.5 bits (223), Expect = 7e-17
 Identities = 55/162 (33%), Positives = 83/162 (51%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            LS+  + D+         L +EW QL++DRD LR  +F TG++K+ L  N++R+IWNA++
Sbjct: 845  LSEEVIKDLMGDALAVSQLDREWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQK 903

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +  +  +DL P K+V  VE L  R  V+   +                         
Sbjct: 904  IFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGD------------------------- 938

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  A  NATLLF+  +R++L +K V  E RL+ +AF W
Sbjct: 939  --RLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEW 978

[57][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
            RepID=UPI0000546D90
          Length = 1972

 Score = 90.1 bits (222), Expect = 9e-17
 Identities = 50/162 (30%), Positives = 88/162 (54%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ +   V   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 931  LQEDVVKDVMTNAHVQSSLEREFEKMREDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 989

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     +DL+P+++V  V+ L  +  ++  D+                         
Sbjct: 990  IFRINPRAPTDLNPARVVDGVKELSKKLVIVNGDD------------------------- 1024

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              +LS  AQ NATLLF +H+R++L SK +  E RL+ +AF W
Sbjct: 1025 --QLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 1064

[58][TOP]
>UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe
           tomentosa RepID=Q1ACT8_9MAGN
          Length = 240

 Score = 90.1 bits (222), Expect = 9e-17
 Identities = 56/166 (33%), Positives = 85/166 (51%)
 Frame = +3

Query: 45  NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
           N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+  LP+ VN++RLIW
Sbjct: 77  NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136

Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
           NA++ F V     SD+ P +IV  ++ L  R +V+  ++                     
Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQERLKVVPGED--------------------- 175

Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                  LS  AQ NATLLF + +R++ ASK VLSE+RLTR+AF W
Sbjct: 176 ------SLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEW 215

[59][TOP]
>UniRef100_A9QMG2 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius dolichura
           RepID=A9QMG2_9BILA
          Length = 273

 Score = 90.1 bits (222), Expect = 9e-17
 Identities = 52/157 (33%), Positives = 83/157 (52%)
 Frame = +3

Query: 72  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
           + D+    D  E +  EWAQL++DR  LR ++F TGE+K  L  N++RLIWNA++IF V 
Sbjct: 134 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIFSTGESKCVLPCNLQRLIWNAQKIFHVE 192

Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
           + +   L+P  ++R V  L  +  ++   ED                           +S
Sbjct: 193 KREPVCLNPLNVIRGVRSLSEKL-IIVGGED--------------------------RIS 225

Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
           + AQ NATLL  + +R++L +K + S H+L ++AF W
Sbjct: 226 KQAQYNATLLMNILLRSTLCAKKMASTHKLNQEAFEW 262

[60][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
            RepID=A1YIB1_9BASI
          Length = 1013

 Score = 90.1 bits (222), Expect = 9e-17
 Identities = 58/160 (36%), Positives = 81/160 (50%)
 Frame = +3

Query: 63   QAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIF 242
            Q  L+D  S   +  +L KEW QL KDR  LR  +F  G  + PL VNI R+I NA++IF
Sbjct: 850  QVGLDD--SSAALQSVLDKEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQIF 907

Query: 243  DVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK 422
             +     SDL P  I++ V  L +R  V+  D+                           
Sbjct: 908  HIDFRKPSDLPPPDIIQMVNDLCNRLIVVRGDD--------------------------- 940

Query: 423  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             LS  AQ NATLLF++ +R++ A++ VL E  L+R+AF W
Sbjct: 941  ALSRAAQXNATLLFRILLRSNFATRRVLEEFHLSREAFVW 980

[61][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B0A92
          Length = 1714

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 51/162 (31%), Positives = 84/162 (51%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ +   V   L +E+ ++K+DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 912  LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 970

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     +DLSP ++V     L  +  ++  D+                         
Sbjct: 971  IFRINTRTPTDLSPLRVVEGTHELSKKLVIVNGDD------------------------- 1005

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L SK +  E RL+ +AF W
Sbjct: 1006 --PLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 1045

[62][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E658E
          Length = 1628

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ +   V   L +E+ ++K+DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 932  LQEDVVKDVMTNAHVQSSLEREFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQK 990

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     +DLSP ++V     L  +  ++  D+                         
Sbjct: 991  IFRINTRTPTDLSPLRVVEGTHDLSKKLVIVNGDD------------------------- 1025

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS+ AQ NATLLF +H+R++L SK +  E RL+ +AF W
Sbjct: 1026 --PLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDW 1065

[63][TOP]
>UniRef100_Q71ET3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Psilotum nudum
            RepID=Q71ET3_PSINU
          Length = 1013

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 56/169 (33%), Positives = 88/169 (52%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  +G+   PL VN++R
Sbjct: 844  ENWNPDYMLAEHVEDLKTIQEFRNVFDAEVQKLEADRRQLCTEIAPSGDNSWPLPVNLKR 903

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
            LIWNA++IF V     SD+ P +IV  V+ L  R +V+  ++                  
Sbjct: 904  LIWNAQKIFKVDFRKPSDMHPMEIVEAVDKLQERLKVVPGED------------------ 945

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     E+S+ AQ NATL F + +R++LASK VL E+RLT++AF W
Sbjct: 946  ---------EISKEAQKNATLFFNILLRSTLASKRVLKEYRLTKEAFEW 985

[64][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
            RepID=B4MAN9_DROVI
          Length = 1889

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +   +D+        D  + L  EW +L  DRD LR  +F  G++K+ L  N+
Sbjct: 917  SNERYMRRVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP +++R V+ LL R  ++T ++                
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND---------------- 1019

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[65][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4L732_DROMO
          Length = 1889

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +   +D+        D  + L  EW +L  DRD LR  +F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDDVIKEMTDSSDAIQELESEWDRLVSDRDNLR-TIFPNGDSKVVLPCNL 975

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP +++R V+ LL R  ++T ++                
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGND---------------- 1019

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[66][TOP]
>UniRef100_A9QMG3 RNA polymerase 2 (Fragment) n=1 Tax=Choriorhabditis cristata
           RepID=A9QMG3_9BILA
          Length = 270

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 49/163 (30%), Positives = 86/163 (52%)
 Frame = +3

Query: 54  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
           +  +  + ++    +    + +EW QL++DR  LR ++F TG+AK+ L  N++RLIWNA+
Sbjct: 123 HYKEEVVRELQGSSEALTEIEEEWRQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQ 181

Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
           +IF V     +DL+P +++  V+  L +  ++ S ED                       
Sbjct: 182 KIFHVHMRQTTDLNPVRVIEGVK-ELSKKLIIVSGED----------------------- 217

Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               +S+ AQ NATLL  + +R++L SK + + H+L  +AF W
Sbjct: 218 ---RISKQAQYNATLLMNILIRSTLCSKKMATSHKLNAEAFEW 257

[67][TOP]
>UniRef100_Q1ACT1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Quercus
           coccinea RepID=Q1ACT1_9ROSI
          Length = 240

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 56/169 (33%), Positives = 85/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E  N  Y+ Q  + D+ +  +   +   E  +L+ DR  L  E+  TG+   PL VN++R
Sbjct: 74  EHWNPDYMMQEHIEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPLPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++IF +     SD+ P +IV  V+ L  R +V+  ++                  
Sbjct: 134 LIWNAQKIFKIDNRRHSDMHPMEIVEAVDKLQERLKVVPGED------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++ ASK VL E++LTR+AF W
Sbjct: 176 ---------LLSVEAQKNATLFFNILLRSTFASKRVLEEYKLTREAFEW 215

[68][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9TK89_PHYPA
          Length = 1646

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 56/149 (37%), Positives = 79/149 (53%)
 Frame = +3

Query: 96   DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275
            D   +   E ++L+ DR  +  E+  TGEA  PL VN++RLIWNA++IF V     SD+ 
Sbjct: 930  DYINVFDAEVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQKIFKVDFRKPSDMH 989

Query: 276  PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455
            P +IV  V+ L  R RV+  D+                           ++S  AQ NAT
Sbjct: 990  PMEIVEAVDKLQERLRVVPGDD---------------------------QISMEAQRNAT 1022

Query: 456  LLFQVHVRASLASKVVLSEHRLTRKAFTW 542
            L F   +R++LASK VL ++RLTR+AF W
Sbjct: 1023 LFFGCLLRSTLASKRVLKDYRLTREAFDW 1051

[69][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MQ29_DROAN
          Length = 1889

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +   +D+        D  + L  EW +L  DRD LR ++F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDDVIKEMTDSSDAIQELEAEWDRLVTDRDSLR-QIFPNGDSKVVLPCNL 975

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T ++                
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 1019

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[70][TOP]
>UniRef100_Q9PTX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lethenteron
           reissneri RepID=Q9PTX4_LAMRE
          Length = 595

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 53/162 (32%), Positives = 84/162 (51%)
 Frame = +3

Query: 57  LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
           L +  +NDI S   +   L KE+ +++ DRD LR  VF TG++K+ L  N+ R+IWNA++
Sbjct: 433 LQEEVVNDIMSNAHIQNELDKEFDRVRSDRDTLR-SVFPTGDSKVVLPCNLMRMIWNAQK 491

Query: 237 IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
           IF +     +D++P +I+  V+ L  R  ++  ++                         
Sbjct: 492 IFHINTRQPTDINPLRIIEGVQDLSKRLMIVKGED------------------------- 526

Query: 417 LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              LS  AQ NATLL   HVR++L ++ V  E RL+ +AF W
Sbjct: 527 --PLSRQAQENATLLLNCHVRSTLCARRVTEEFRLSLQAFEW 566

[71][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99368_SOYBN
          Length = 977

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 57/170 (33%), Positives = 88/170 (51%)
 Frame = +3

Query: 33  QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
           +E+    Y+ Q  + D+ +  +   +   E  +L+ DR  L  E+   G+  LPL VN++
Sbjct: 113 EENWKPNYMLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLK 172

Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
           RLIWNA++ F V     SD+ P +IV  ++ L  R +V+   EDA               
Sbjct: 173 RLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPG-EDA--------------- 216

Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                      LS+ AQ NATLLF + +R++ ASK VL E+RL+R++F W
Sbjct: 217 -----------LSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEW 255

[72][TOP]
>UniRef100_Q1ACU1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
           scandens RepID=Q1ACU1_9MAGN
          Length = 240

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 57/169 (33%), Positives = 86/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    ++D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215

[73][TOP]
>UniRef100_Q1ACT2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nepenthes
           ampullaria RepID=Q1ACT2_9CARY
          Length = 240

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 58/169 (34%), Positives = 84/169 (49%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E  N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   PL VN+ R
Sbjct: 74  EDWNPNYMLPDHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLTR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F +    RSD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKIDLRRRSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSIEAQKNATLFFNILLRSTLASKRVLQEYRLTREAFDW 215

[74][TOP]
>UniRef100_Q1ACS8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito
           RepID=Q1ACS8_9MAGN
          Length = 240

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 55/166 (33%), Positives = 85/166 (51%)
 Frame = +3

Query: 45  NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
           N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+  LP+ VN++RLIW
Sbjct: 77  NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136

Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
           NA++ F V     SD+ P +IV  ++ L  + +V+  ++                     
Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQEKLKVVPGED--------------------- 175

Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                  LS  AQ NATLLF + +R++ ASK VLSE+RLTR+AF W
Sbjct: 176 ------SLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEW 215

[75][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5Y387_SORBI
          Length = 1874

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 58/163 (35%), Positives = 83/163 (50%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            YL     +D+ +  +   +L  E  +L+ DR  L  E+   G    PL VN++RLIWNA+
Sbjct: 928  YLLPVHFDDLKTISEFRSVLEAEVHKLEADRFQLGTEIATNGSHTWPLPVNLKRLIWNAQ 987

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            + F +     SD+ P +IV  ++ L  R +V+  D     DAI+ E              
Sbjct: 988  KTFKIDIRTCSDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE-------------- 1028

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                    AQ NATL F +H+RA+ ASK VL E+RLTR+AF W
Sbjct: 1029 --------AQKNATLFFNIHLRATFASKRVLREYRLTREAFEW 1063

[76][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
           RepID=A9QMP5_9BILA
          Length = 474

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 49/157 (31%), Positives = 84/157 (53%)
 Frame = +3

Query: 72  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
           + D+     V E + KEW QL++DR  LR ++F TG+AK+ L  N++RLIWNA++IF V 
Sbjct: 137 IRDLQGDSQVMEEVEKEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVE 195

Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
               + L+P ++++ V  L  +  ++  D+                            +S
Sbjct: 196 TRQPTSLNPLRVIQGVRELSEKLVIVCGDD---------------------------RIS 228

Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
           + AQ NATLL  + +R++L SK + + ++L ++AF W
Sbjct: 229 KQAQYNATLLMNILLRSTLCSKKMATTYKLNQEAFEW 265

[77][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
            thaliana RepID=RPB1_ARATH
          Length = 1840

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 57/169 (33%), Positives = 87/169 (51%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E+ N  YLS   L D+    ++ ++   E+++L+ DR  L  E+   G++  PL VNI+R
Sbjct: 924  ENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKR 983

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
             IWNA++ F +     SD+ P +IV  V+ L  R  V+  D+                  
Sbjct: 984  HIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVVPGDD------------------ 1025

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                      LS  AQ NATL F + +R++LASK VL E++L+R+AF W
Sbjct: 1026 ---------ALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEW 1065

[78][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 52/163 (31%), Positives = 83/163 (50%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            YLS     D+ +  ++  +   E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA+
Sbjct: 929  YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            + F +     SD+ P +IV  ++ L  R +V+  D+D  ++                   
Sbjct: 989  KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIE------------------- 1029

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                    AQ NATL F + +R++ ASK VL E+RLT++AF W
Sbjct: 1030 --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 1064

[79][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q5WMZ9_ORYSJ
          Length = 1741

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 52/163 (31%), Positives = 83/163 (50%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            YLS     D+ +  ++  +   E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA+
Sbjct: 876  YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 935

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            + F +     SD+ P +IV  ++ L  R +V+  D+D  ++                   
Sbjct: 936  KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIE------------------- 976

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                    AQ NATL F + +R++ ASK VL E+RLT++AF W
Sbjct: 977  --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 1011

[80][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 59/163 (36%), Positives = 80/163 (49%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            ++    +  I    D   LL  E+ QL  DR  LR  +  T E   PL VN++RLIWNA+
Sbjct: 920  FMDADIVQKIRDSADDRILLEAEFKQLMNDRTALRESI-PTDENTWPLPVNLKRLIWNAQ 978

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            +IF +     SDL P  I++ V LL  +  V+  ++                        
Sbjct: 979  KIFHIDVRKPSDLDPVDIIKGVNLLTKQLVVIPGED------------------------ 1014

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                LS  AQ NAT+LFQ+ VR+ LASK VL+E+RLT  AF W
Sbjct: 1015 ---PLSVEAQANATMLFQILVRSCLASKRVLTEYRLTSHAFEW 1054

[81][TOP]
>UniRef100_Q2TUN8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Taxus canadensis
            RepID=Q2TUN8_TAXCA
          Length = 1013

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 52/170 (30%), Positives = 86/170 (50%)
 Frame = +3

Query: 33   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
            QE+ N  Y+    ++D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++
Sbjct: 843  QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIATTGDNSWPMPVNLK 902

Query: 213  RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
            RLIWNA++ F +    RSD+ P +IV  ++ L  R +V+  D+   ++            
Sbjct: 903  RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLMSIE------------ 950

Query: 393  ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                           AQ NATL F + +R++ ASK VL E+ LT++AF W
Sbjct: 951  ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEW 985

[82][TOP]
>UniRef100_Q1ACU6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dillenia
           suffruticosa RepID=Q1ACU6_9MAGN
          Length = 240

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 57/169 (33%), Positives = 85/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRCQLATEIATTGDNSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSTEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215

[83][TOP]
>UniRef100_Q1ACU3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
           cuneiformis RepID=Q1ACU3_9MAGN
          Length = 240

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 56/169 (33%), Positives = 86/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    ++D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLSEHVDDLKTIREFRNVFDAEVQKLEADRYQLATEIATTGDNSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           L+WNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LVWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215

[84][TOP]
>UniRef100_Q1ACS7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Sedum burrito
           RepID=Q1ACS7_9MAGN
          Length = 240

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 56/166 (33%), Positives = 84/166 (50%)
 Frame = +3

Query: 45  NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
           N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+  LP+ VN++RLIW
Sbjct: 77  NPNYMLSEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSLPMPVNLKRLIW 136

Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
           NA++ F V     SD+ P +IV  ++ L  R +V+   +                     
Sbjct: 137 NAQKTFKVDSRRPSDMHPMEIVEAIDKLQERLKVVPGAD--------------------- 175

Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                  LS  AQ NATLLF + +R++ ASK VLSE+RLTR+AF W
Sbjct: 176 ------SLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEW 215

[85][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q0DKN9_ORYSJ
          Length = 1834

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 52/163 (31%), Positives = 83/163 (50%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            YLS     D+ +  ++  +   E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA+
Sbjct: 929  YLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQ 988

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            + F +     SD+ P +IV  ++ L  R +V+  D+D  ++                   
Sbjct: 989  KTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIE------------------- 1029

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                    AQ NATL F + +R++ ASK VL E+RLT++AF W
Sbjct: 1030 --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 1064

[86][TOP]
>UniRef100_B7SNX1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nicotiana tabacum
            RepID=B7SNX1_TOBAC
          Length = 1010

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 56/166 (33%), Positives = 85/166 (51%)
 Frame = +3

Query: 45   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
            N  Y+   A+ D+ +  ++  +   E  +L+ DR  L  E+  TG+   PL VNI+RL+ 
Sbjct: 844  NPSYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQLGTEIAVTGDNSWPLPVNIQRLVL 903

Query: 225  NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
            NA++ F +    RSD+ P +IV  V+ L  R +V+  D+                     
Sbjct: 904  NAQKTFKIDFRRRSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942

Query: 405  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                   LS  AQ NATL F + +R++LASK VL E+RL+R+AF W
Sbjct: 943  ------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFDW 982

[87][TOP]
>UniRef100_Q9BNE0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hadrurus arizonensis
           RepID=Q9BNE0_HADAR
          Length = 543

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDI--HSGGDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           + SN  YL +    D+     G  T L  L +EW +L+KDR  LR  +F TG++K+ L  
Sbjct: 383 DPSNERYLRRIFTEDVVRELMGSATALSELEREWERLEKDRRVLR-SIFPTGDSKVVLPC 441

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWNA++IF V     +DLSP ++V+ VE L+ +  V+  ++              
Sbjct: 442 NLQRMIWNAQKIFHVNLRSATDLSPLRVVQGVEELVKKLVVVPGED-------------- 487

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS  A  NATLLF+  +R++L +K V  E RL+ +AF W
Sbjct: 488 -------------RLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEW 527

[88][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
           wirthi RepID=Q6GYH6_9BILA
          Length = 630

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 51/169 (30%), Positives = 87/169 (51%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E +   Y ++  + D+ S  +    +  EWAQL++DR  LR ++F TG AK+ L  N++R
Sbjct: 138 EKALKKYYTEDVVRDLVSSTEAFREVEAEWAQLEEDRQLLR-KIFPTGNAKIVLPCNLQR 196

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++IF V     + L+P K+++ V  L  +  ++  ++                  
Sbjct: 197 LIWNAQKIFHVEMRKPTTLNPMKVIQGVRELSKKLIIVNGED------------------ 238

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     +S+ AQ NATLL  + +R++L SK + S ++L  +AF W
Sbjct: 239 ---------RISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDW 278

[89][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila simulans RepID=Q1WKU2_DROSI
          Length = 746

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 49/157 (31%), Positives = 84/157 (53%)
 Frame = +3

Query: 72  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
           + ++    +  + L  EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + 
Sbjct: 73  IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 131

Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
           +   +DLSP ++++ V+ LL R  ++T ++                            +S
Sbjct: 132 KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 164

Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
           + A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 165 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201

[90][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=O01364_9BILA
          Length = 633

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 50/163 (30%), Positives = 86/163 (52%)
 Frame = +3

Query: 54  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
           + ++  + D+    +    +  EWAQL++DR  LR ++F TG+AK+ L  N++RL+WNA+
Sbjct: 138 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 196

Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
           +IF V     +DL+P +++  V   L +  V+   ED                       
Sbjct: 197 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED----------------------- 232

Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               +S+ AQ NATLL  + +R++L SK + S ++L ++AF W
Sbjct: 233 ---RISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDW 272

[91][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4IK28_DROSE
          Length = 1887

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 49/157 (31%), Positives = 84/157 (53%)
 Frame = +3

Query: 72   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
            + ++    +  + L  EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + 
Sbjct: 931  IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989

Query: 252  QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
            +   +DLSP ++++ V+ LL R  ++T ++                            +S
Sbjct: 990  KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 1022

Query: 432  ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
            + A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[92][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
            RepID=A9UNH9_DROME
          Length = 1887

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 49/157 (31%), Positives = 84/157 (53%)
 Frame = +3

Query: 72   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
            + ++    +  + L  EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + 
Sbjct: 931  IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989

Query: 252  QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
            +   +DLSP ++++ V+ LL R  ++T ++                            +S
Sbjct: 990  KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 1022

Query: 432  ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
            + A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[93][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
           armata SB363 RepID=A9UEE2_9BILA
          Length = 475

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 51/141 (36%), Positives = 78/141 (55%)
 Frame = +3

Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299
           EWAQL++DR  LR ++F TG+AK+ L  N++RLIWNA++IF V     +DL+P +++  +
Sbjct: 154 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGI 212

Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479
             L  +  V+ S ED                           +S+ AQ NATLL  + +R
Sbjct: 213 RELSTKL-VIVSGED--------------------------RISQQAQYNATLLMNILIR 245

Query: 480 ASLASKVVLSEHRLTRKAFTW 542
           ++L SK + S H+L  +AF W
Sbjct: 246 STLCSKKMASTHKLNSEAFEW 266

[94][TOP]
>UniRef100_A9QMQ5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=A9QMQ5_9BILA
          Length = 276

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 50/163 (30%), Positives = 86/163 (52%)
 Frame = +3

Query: 54  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
           + ++  + D+    +    +  EWAQL++DR  LR ++F TG+AK+ L  N++RL+WNA+
Sbjct: 131 FYTEDVVRDLQGSSEALREVESEWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQ 189

Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
           +IF V     +DL+P +++  V   L +  V+   ED                       
Sbjct: 190 KIFHVEMRKPTDLNPLRVIEGVR-ELSKKLVIVGGED----------------------- 225

Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               +S+ AQ NATLL  + +R++L SK + S ++L ++AF W
Sbjct: 226 ---RISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDW 265

[95][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
           RepID=A9QMH3_9BILA
          Length = 619

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 3/181 (1%)
 Frame = +3

Query: 9   LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
           L E D  L    E +   Y ++  + ++    +  + + +EW QL++DR  LR ++F +G
Sbjct: 116 LFEQDFKLDLSDERTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPSG 174

Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359
            AK+ L  N++RL+WNA++IF V     +DL+P +++  V   L +  ++ S ED     
Sbjct: 175 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED----- 228

Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539
                                ++S+ AQ NATLL  + VR++L SK + S+++L  +AF 
Sbjct: 229 ---------------------KISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFE 267

Query: 540 W 542
           W
Sbjct: 268 W 268

[96][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
           dolichuroides RepID=A9QMG1_9BILA
          Length = 629

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 49/157 (31%), Positives = 83/157 (52%)
 Frame = +3

Query: 72  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
           + D+    D  E +  EWAQL++DR  LR +++ TGE+K  L  N++RLIWNA++IF V 
Sbjct: 151 IRDLQGSPDAIEEVENEWAQLEEDRRLLR-KIYATGESKCVLPCNLQRLIWNAQKIFHVE 209

Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
           + +   L+P  ++R V  L  +  ++  D+                            +S
Sbjct: 210 KREPVCLNPLNVIRGVRSLSEKLIIVGGDD---------------------------RIS 242

Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
           + AQ NATLL  + +R++L +K + + H+L ++AF W
Sbjct: 243 KQAQYNATLLMNILLRSTLCAKKMATTHKLNQEAFEW 279

[97][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QME1_9BILA
          Length = 628

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
 Frame = +3

Query: 9   LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
           L E D  L    E +   Y ++  + ++    +  + + +EW QL++DR  LR ++F  G
Sbjct: 117 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 175

Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359
            AK+ L  N++RL+WNA++IF V     +DL+P +++  V  L  +  ++ S ED     
Sbjct: 176 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKL-IIVSGED----- 229

Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539
                                 +S+ AQ NATLL  + VR++L SK + S+++L  +AF 
Sbjct: 230 ---------------------RISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFE 268

Query: 540 W 542
           W
Sbjct: 269 W 269

[98][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
            melanogaster RepID=RPB1_DROME
          Length = 1887

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 49/157 (31%), Positives = 84/157 (53%)
 Frame = +3

Query: 72   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
            + ++    +  + L  EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + 
Sbjct: 931  IKEMTDSSEAIQELEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHIN 989

Query: 252  QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
            +   +DLSP ++++ V+ LL R  ++T ++                            +S
Sbjct: 990  KRLPTDLSPIRVIKGVKTLLERCVIVTGND---------------------------RIS 1022

Query: 432  ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
            + A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1023 KQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[99][TOP]
>UniRef100_Q1ACU5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dionaea
           muscipula RepID=Q1ACU5_DIOMU
          Length = 240

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 55/166 (33%), Positives = 84/166 (50%)
 Frame = +3

Query: 45  NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
           N  Y+    + D+ S  +  ++   E ++L+ DR  L  ++  TG+   PL VN+ RLI 
Sbjct: 77  NPKYIRPDYIEDLKSIPEFHDVFEAEISKLESDRLLLATQIATTGDNSWPLPVNLARLIQ 136

Query: 225 NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
           NA+++F +     SDL P +IV  V+ L  R RV+  D+                     
Sbjct: 137 NAQKLFKIDTRGTSDLMPMEIVEAVDKLQERLRVVPGDD--------------------- 175

Query: 405 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                  LS+ AQ NATL F + +R++LA K VL E+RL+R+AF W
Sbjct: 176 ------HLSDEAQRNATLFFNILLRSTLACKRVLQEYRLSREAFEW 215

[100][TOP]
>UniRef100_Q1ACU2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Hibbertia
           aspera RepID=Q1ACU2_9MAGN
          Length = 240

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 57/169 (33%), Positives = 85/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDW 215

[101][TOP]
>UniRef100_Q1ACS6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Senecio
           picticaulis RepID=Q1ACS6_9ASTR
          Length = 240

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 58/169 (34%), Positives = 85/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMIPDHVEDLKTIREFRNVFDAEVQKLEADRIQLGTEIATTGDNSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R RV+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++ ASK VLSE+RLTR+AF W
Sbjct: 176 ---------LLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFDW 215

[102][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
            pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
          Length = 1811

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +      + ++    +  + L  EW  L +DRD LR ++F  G++K+ L  N+
Sbjct: 839  SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 897

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T  +                
Sbjct: 898  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 941

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 942  -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 981

[103][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
            pseudoobscura RepID=Q29IN2_DROPS
          Length = 1889

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +      + ++    +  + L  EW  L +DRD LR ++F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T  +                
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[104][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
            RepID=B4H2R8_DROPE
          Length = 1804

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +      + ++    +  + L  EW  L +DRD LR ++F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLR-QIFPNGDSKVVLPCNL 975

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T  +                
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[105][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
            RepID=B0XAQ9_CULQU
          Length = 1874

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 50/161 (31%), Positives = 85/161 (52%)
 Frame = +3

Query: 60   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
            ++  + ++   GDV + +  E+ QL +DR+ LR ++F  G++K+ L  N++R+IWN ++I
Sbjct: 925  NEEVIKELTESGDVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983

Query: 240  FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
            F + +   +DLSP K+++ V  LL +  ++   +                          
Sbjct: 984  FHINKRAPTDLSPLKVIQGVRDLLQKCVIVAGTD-------------------------- 1017

Query: 420  KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              LS+ A  NATLLFQ  VR++L +K V  E RL  +AF W
Sbjct: 1018 -RLSKQANENATLLFQCLVRSTLCTKYVAEEFRLINEAFEW 1057

[106][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
           varius RepID=A8BDP1_PARVA
          Length = 467

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 52/174 (29%), Positives = 91/174 (52%)
 Frame = +3

Query: 21  DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200
           DL+L E +   YL++  + D+ +       L +EW ++K+D+  LR ++F TG++K+ L 
Sbjct: 62  DLNLNERTLKRYLNEDIVKDLIANTHCLTELEREWERIKEDQTLLR-QIFPTGDSKVVLP 120

Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380
            N++R+IWNA++IF +     SDL P K+VR V+ L  +  V+                 
Sbjct: 121 CNLQRIIWNAQKIFRINPRLPSDLHPLKVVRGVQELSEKLIVV----------------- 163

Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     + +  +S+ AQL+AT L    +R++L ++ V  E +L+  AF W
Sbjct: 164 ----------KGVDRISQRAQLDATFLMNALIRSTLCTRRVAEEFKLSSDAFDW 207

[107][TOP]
>UniRef100_Q9BNE5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Branchia sp.
           'Ere' RepID=Q9BNE5_9ARAC
          Length = 232

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           ++SN  Y+    ++  + ++         L KEW +LKKDR+ LR  +F TG++K+ +  
Sbjct: 72  DASNERYMHRIFTEEVVRELMGSAMALSELEKEWERLKKDREVLR-TIFPTGDSKVVMPC 130

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R+IWNA++IF V    ++DLSP + ++ VE L+ +  ++  ++              
Sbjct: 131 NLQRMIWNAQKIFHVNTRSQTDLSPLRTIKGVEDLVKKLVIVPGED-------------- 176

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS  A  NATLLF+  +R++L +K V  E RL+ +AF W
Sbjct: 177 -------------RLSIQANDNATLLFRALLRSTLCTKRVSDEFRLSTEAFDW 216

[108][TOP]
>UniRef100_O02452 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mastigoproctus
           giganteus RepID=O02452_MASGI
          Length = 887

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 53/161 (32%), Positives = 84/161 (52%)
 Frame = +3

Query: 60  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
           ++  + D+         L KEW +LKKDR+ LR  VF TG++K+ L  N++R+IWNA++I
Sbjct: 574 TEDVVRDLLGSATALSELEKEWERLKKDREVLR-TVFPTGDSKVVLPCNLQRMIWNAQKI 632

Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
           F V     +DLSP +++  VE L+ +  ++  ++                          
Sbjct: 633 FRVNARAPTDLSPFRVIHGVEDLVKKLIIVPGED-------------------------- 666

Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             LS  A  NATLLF+  +R++L +K V  E RL+ +AF W
Sbjct: 667 -RLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEW 706

[109][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4NDK9_DROWI
          Length = 1890

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 50/157 (31%), Positives = 83/157 (52%)
 Frame = +3

Query: 72   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
            + ++    D  + L  EW +L  DRD LR ++F  G++K+ L  N++R+IWN ++IF + 
Sbjct: 931  IKEMTDSSDAIQELESEWDRLVVDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHIN 989

Query: 252  QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
            +   +DLSP ++++ V  LL R  ++T ++                            +S
Sbjct: 990  KRLPTDLSPMRVIKGVRGLLERCVIVTGND---------------------------RIS 1022

Query: 432  ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
            + A  NATLLFQ  VR++L +K V  E RL+ +AF W
Sbjct: 1023 KQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEW 1059

[110][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
           RepID=A9QMS7_9BILA
          Length = 407

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 50/157 (31%), Positives = 86/157 (54%)
 Frame = +3

Query: 72  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
           + ++ +  +  + + +EW QL+ DR  LR ++F TG+A + L  N++R++WNA++IF V 
Sbjct: 148 IRELQNSPEALQAVEEEWIQLESDRRLLR-KIFPTGKAGVVLPCNLDRMMWNARKIFHVE 206

Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
               +DLSP K+++ V+ L  R  V+ S ED                          ++S
Sbjct: 207 TRKPTDLSPLKVIQGVKDLTSRL-VIVSGED--------------------------KIS 239

Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
           + AQ NATLL  + +R++L SK +  +H+L  +AF W
Sbjct: 240 QQAQYNATLLMNILLRSTLCSKRLAEKHKLNTEAFEW 276

[111][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
           RepID=A9QMF8_9BILA
          Length = 621

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 52/169 (30%), Positives = 86/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E S     ++  + ++    D  +    EW QL++DR  LR ++F TG+AK+ L  N++R
Sbjct: 136 EKSLRTLYTEDVVRELQGSSDALKEAEAEWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++IF V     +DL+P +++  V  L  +  ++ S ED                 
Sbjct: 195 LIWNAQKIFHVETRKPTDLNPIRVIEGVRELSSKL-IIVSGED----------------- 236

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     +S+ AQ NATLL  + +R++L SK + S ++L  +AF W
Sbjct: 237 ---------RISKQAQYNATLLMNILIRSTLCSKKMASTYKLNSEAFEW 276

[112][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila erecta RepID=Q1WKU4_DROER
          Length = 760

 Score = 87.4 bits (215), Expect = 6e-16
 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42  SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
           SN  Y+ +   +D+        +  + L  EW +L  DRD LR ++F  G++K+ L  N+
Sbjct: 59  SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117

Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
           +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T ++                
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 161

Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                       +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 162 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201

[113][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
           Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
          Length = 766

 Score = 87.4 bits (215), Expect = 6e-16
 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42  SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
           SN  Y+ +   +D+        +  + L  EW +L  DRD LR ++F  G++K+ L  N+
Sbjct: 59  SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 117

Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
           +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T ++                
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 161

Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                       +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 162 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201

[114][TOP]
>UniRef100_O02450 DNA-directed RNA polymerase (Fragment) n=1 Tax=Limulus polyphemus
           RepID=O02450_LIMPO
          Length = 778

 Score = 87.4 bits (215), Expect = 6e-16
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 4/172 (2%)
 Frame = +3

Query: 39  SSNSPYLSQAALNDIHSG--GDVTEL--LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 206
           +SN  YL +    D+     G  T L  L KEW +LK DR+ LR  +F TG++K+ L  N
Sbjct: 454 ASNERYLRRIFTEDVVRDLMGSATALSELEKEWEKLKHDRELLR-AIFPTGDSKVVLPCN 512

Query: 207 IERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPD 386
           ++R+IW+A++IF V Q   +DLSP K++  VE L+ +  V+  ++               
Sbjct: 513 LQRMIWSAQKIFHVNQRAPTDLSPLKVIGGVEELVKKLVVVPGED--------------- 557

Query: 387 GSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        LS  A  NAT+LF+  +R++L +K V  E RL+ ++F W
Sbjct: 558 ------------RLSIQANDNATILFRALLRSTLCAKRVAEEFRLSSESFQW 597

[115][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4PY98_DROYA
          Length = 1889

 Score = 87.4 bits (215), Expect = 6e-16
 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +   +D+        +  + L  EW +L  DRD LR ++F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T ++                
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 1019

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[116][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4JXA6_DROGR
          Length = 1889

 Score = 87.4 bits (215), Expect = 6e-16
 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
 Frame = +3

Query: 42   SNSPYLSQAALNDI-----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVN 206
            SN  Y+ +   +D+      S   + EL A EW  L  DRD LR  +F+ G++K+ L  N
Sbjct: 917  SNERYMRKVFADDVIKEITESSVAIQELEA-EWDHLVTDRDNLR-TIFRNGDSKVVLPCN 974

Query: 207  IERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPD 386
            ++R+IWN ++IF + +   +DLSP +++R V  LL+R  ++T ++               
Sbjct: 975  LQRMIWNVQKIFHINKRLPTDLSPMRVIRGVSDLLNRCVIVTGND--------------- 1019

Query: 387  GSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 ------------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[117][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NUC1_DROER
          Length = 1889

 Score = 87.4 bits (215), Expect = 6e-16
 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +   +D+        +  + L  EW +L  DRD LR ++F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDRLVGDRDSLR-QIFPNGDSKVVLPCNL 975

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T ++                
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 1019

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[118][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
           subgroup RepID=A9YGC1_DROME
          Length = 247

 Score = 87.4 bits (215), Expect = 6e-16
 Identities = 49/144 (34%), Positives = 79/144 (54%)
 Frame = +3

Query: 111 LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 290
           L  EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + +   +DLSP +++
Sbjct: 1   LEAEWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVI 59

Query: 291 RXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 470
           + V+ LL R  ++T ++                            +S+ A  NATLLFQ 
Sbjct: 60  KGVKTLLERCVIVTGND---------------------------RISKQANENATLLFQC 92

Query: 471 HVRASLASKVVLSEHRLTRKAFTW 542
            +R++L +K V  E RL+ +AF W
Sbjct: 93  LIRSTLCTKYVSEEFRLSTEAFEW 116

[119][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score = 87.4 bits (215), Expect = 6e-16
 Identities = 56/156 (35%), Positives = 80/156 (51%)
 Frame = +3

Query: 75   NDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ 254
            NDI    +V  +L +E+ QL  DR  LR EVF  G+   PL VNI R++ N++RIF+V +
Sbjct: 920  NDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQRIFNVDK 979

Query: 255  NDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSE 434
            +  SDL+  +IV  V+ L  R  ++  D                             L++
Sbjct: 980  SKVSDLTIPEIVEGVQSLCKRLTIVRGD---------------------------SSLAK 1012

Query: 435  TAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             AQ NAT+LFQ  VR+   +K V+ E+RL R AF W
Sbjct: 1013 EAQENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEW 1048

[120][TOP]
>UniRef100_Q71ET4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda
            RepID=Q71ET4_AMBTC
          Length = 1013

 Score = 87.0 bits (214), Expect = 8e-16
 Identities = 54/170 (31%), Positives = 86/170 (50%)
 Frame = +3

Query: 33   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
            QE+ +  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++
Sbjct: 843  QENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVNLK 902

Query: 213  RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
            RLIWNA+++F V     SD+ P +IV  V+ L  R +V+  D+   ++            
Sbjct: 903  RLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------ 950

Query: 393  ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                           AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 951  ---------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFDW 985

[121][TOP]
>UniRef100_Q2TUN9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Thuja occidentalis
            RepID=Q2TUN9_THUOC
          Length = 1013

 Score = 87.0 bits (214), Expect = 8e-16
 Identities = 51/170 (30%), Positives = 86/170 (50%)
 Frame = +3

Query: 33   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
            QE+ N  Y+    ++D+ +  +   +   E  +L+ DR  L  E+  +G+   P+ VN++
Sbjct: 843  QENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVNLK 902

Query: 213  RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
            RLIWNA++ F +    RSD+ P +IV  ++ L  R +V+  D+   ++            
Sbjct: 903  RLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLISIE------------ 950

Query: 393  ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                           AQ NATL F + +R++ ASK VL E+ LT++AF W
Sbjct: 951  ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEW 985

[122][TOP]
>UniRef100_Q9NJM1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hanseniella sp.
           'Han' RepID=Q9NJM1_9MYRI
          Length = 468

 Score = 87.0 bits (214), Expect = 8e-16
 Identities = 50/161 (31%), Positives = 82/161 (50%)
 Frame = +3

Query: 60  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
           ++  + D+     V   L KEW  L+KDR  LR E+F  G++K+ L  N++R+IWNA++I
Sbjct: 320 TEDVVKDLIGSAQVLSELEKEWELLQKDRKSLR-EIFPKGDSKVVLPCNLQRMIWNAQKI 378

Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
           F + Q   +DL+P +++  V  L  +  ++  ++                          
Sbjct: 379 FHINQRSATDLNPVRVIEGVRELTKKIVIVVGED-------------------------- 412

Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             +S+ A  NATLLF   +R++L +K V  E RLT +AF W
Sbjct: 413 -RISKQANENATLLFNCLLRSTLCTKRVAEEFRLTTEAFEW 452

[123][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila orena RepID=Q1WKU3_DROOR
          Length = 750

 Score = 87.0 bits (214), Expect = 8e-16
 Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42  SNSPYLSQAALNDI----HSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
           SN  Y+ +   +D+        +  + L  EW  L  DRD LR ++F  G++K+ L  N+
Sbjct: 59  SNERYMRKVFTDDVIKEMTDSSEAIQELEAEWDHLVGDRDSLR-QIFPNGDSKVVLPCNL 117

Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
           +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T ++                
Sbjct: 118 QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKGLLERCVIVTGND---------------- 161

Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                       +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 162 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 201

[124][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QMP3_9BILA
          Length = 406

 Score = 87.0 bits (214), Expect = 8e-16
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
 Frame = +3

Query: 9   LTEPDLHLQ---ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTG 179
           L E D  L    E +   Y ++  + ++    +  + + +EW QL++DR  LR ++F  G
Sbjct: 124 LFEKDFKLDLSDEKTLRKYYTEDVIRELQGSSEAIKEVEQEWGQLEEDRRLLR-KIFPNG 182

Query: 180 EAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDA 359
            AK+ L  N++RL+WNA++IF V     +DL+P +++  V  L  +  +++ +       
Sbjct: 183 NAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEGVRELSQKLIIVSGE------- 235

Query: 360 IAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFT 539
                                 +S+ AQ NATLL  + VR++L SK + S+++L  +AF 
Sbjct: 236 --------------------NRISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFE 275

Query: 540 W 542
           W
Sbjct: 276 W 276

[125][TOP]
>UniRef100_Q1ACV1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis
           beckleri RepID=Q1ACV1_9MAGN
          Length = 240

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 57/169 (33%), Positives = 84/169 (49%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           ES N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ESWNPGYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215

[126][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
           RepID=Q6E228_9BILA
          Length = 621

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 49/169 (28%), Positives = 89/169 (52%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E +   + ++  + D+    +  + +  EW QL++DR  LR ++F TG+AK+ L  N++R
Sbjct: 136 EKTLRKFYTEEVVRDLQGSTEAMKEVESEWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQR 194

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++IF V     +DL+P +++  ++ L  +  ++ S ED                 
Sbjct: 195 LIWNAQKIFHVETRKPTDLNPLRVIDGIKELSSKL-IIVSGED----------------- 236

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     +S+ AQ NATLL  + +R++L SK + S ++L  ++F W
Sbjct: 237 ---------RISQQAQYNATLLMNILIRSTLCSKKMASTYKLNAESFEW 276

[127][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           regenfussi RepID=A9QMG9_9BILA
          Length = 620

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 47/141 (33%), Positives = 78/141 (55%)
 Frame = +3

Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299
           EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA+++F V    +++L+P +++  V
Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQKVFHVETRKQTELNPLRVIEGV 214

Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479
             L  +  ++  D+                            +S+ AQ NATLL  + +R
Sbjct: 215 RELSKKLVIVGGDD---------------------------RISKQAQFNATLLMNILLR 247

Query: 480 ASLASKVVLSEHRLTRKAFTW 542
           ++L SK V  +HRL ++AF W
Sbjct: 248 STLCSKQVAEKHRLNQEAFEW 268

[128][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
           dermatitica RepID=A9QMG4_9PELO
          Length = 478

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 49/161 (30%), Positives = 82/161 (50%)
 Frame = +3

Query: 60  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
           ++  + D+    +  + +  EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++I
Sbjct: 126 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 184

Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
           F V     S L+P K+V  V+ L H+  ++  D+                          
Sbjct: 185 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD-------------------------- 218

Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             +S+ AQ NATLL  + +R++L SK +  +HRL  + F W
Sbjct: 219 -RISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEW 258

[129][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
           strongyloides dermatitica RepID=A9QMF0_9PELO
          Length = 633

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 49/161 (30%), Positives = 82/161 (50%)
 Frame = +3

Query: 60  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
           ++  + D+    +  + +  EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++I
Sbjct: 145 TEDVVRDLLGSSNALQEVEAEWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKI 203

Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
           F V     S L+P K+V  V+ L H+  ++  D+                          
Sbjct: 204 FKVETRKPSSLNPLKVVSGVKELSHKLVIVCGDD-------------------------- 237

Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             +S+ AQ NATLL  + +R++L SK +  +HRL  + F W
Sbjct: 238 -RISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEW 277

[130][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
          Length = 1935

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 899  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 957

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 958  IFHINPRLPSDLHPIKVVEGVKKLSKKLVIVNGDD------------------------- 992

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 993  --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1032

[131][TOP]
>UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis
            RepID=Q2PYR1_9FUNG
          Length = 1022

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 57/170 (33%), Positives = 86/170 (50%)
 Frame = +3

Query: 33   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
            ++S  S  L  + L ++    +V  +L  E+ QLK+DR  LR  + + GEA+ P+ VN+ 
Sbjct: 852  EKSFPSGTLEFSVLKNVEGNDEVQRVLDDEYEQLKEDRHILRKFIARDGEARRPMPVNLP 911

Query: 213  RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
            RLI NA++IF +     S+LSP +IV  +  L     VL  +     D++ RE       
Sbjct: 912  RLIKNAQQIFHIDHRKPSNLSPVEIVEKIRKLADSLIVLRGN-----DSLTRE------- 959

Query: 393  ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                           AQ NATLLFQ+++R++  SK VL E+ L   A  W
Sbjct: 960  ---------------AQQNATLLFQIYLRSTFPSKRVLQEYHLNSNALDW 994

[132][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase II subunit A) (DNA-directed RNA polymerase III
            largest subunit) n=1 Tax=Equus caballus
            RepID=UPI0001796DD3
          Length = 1834

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[133][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
            isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
          Length = 1970

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[134][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
          Length = 1913

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[135][TOP]
>UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Macaca mulatta RepID=UPI0000D9E16B
          Length = 1193

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[136][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2C
          Length = 1888

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[137][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2B
          Length = 1892

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 936  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 995  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069

[138][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2A
          Length = 1896

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 936  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 995  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069

[139][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B29
          Length = 1891

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 903  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 961

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 962  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 996

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 997  --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1036

[140][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B28
          Length = 1908

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 920  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 979  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1013

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1014 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1053

[141][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 18 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B27
          Length = 1831

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[142][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 17 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B26
          Length = 1684

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 924  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 983  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1017

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1018 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1057

[143][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 16 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B25
          Length = 1752

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 924  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 982

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 983  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1017

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1018 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1057

[144][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B24
          Length = 1924

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 936  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 995  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069

[145][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 14 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B23
          Length = 1653

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 907  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 966  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1000

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1001 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1040

[146][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 13 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B22
          Length = 1722

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 907  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 965

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 966  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1000

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1001 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1040

[147][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B21
          Length = 1922

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[148][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B20
          Length = 1923

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 935  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 993

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 994  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1028

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1029 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1068

[149][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 10 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1F
          Length = 1840

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 930  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 989  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1023

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1024 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1063

[150][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 9 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1E
          Length = 1851

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 930  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 988

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 989  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1023

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1024 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1063

[151][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1D
          Length = 1764

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 952  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 1010

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 1011 IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1045

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1046 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1085

[152][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 5 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B19
          Length = 1693

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 920  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 978

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 979  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1013

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1014 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1053

[153][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B17
          Length = 1788

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[154][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B16
          Length = 1922

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[155][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25C
          Length = 1968

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 936  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 994

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 995  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1029

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1030 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1069

[156][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25B
          Length = 1932

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[157][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
          Length = 1970

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[158][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
            familiaris RepID=UPI0001951285
          Length = 1969

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[159][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
          Length = 1966

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[160][TOP]
>UniRef100_Q1ACV2 RNA polymerase II largest subunit (Fragment) n=1 Tax=Aextoxicon
           punctatum RepID=Q1ACV2_9MAGN
          Length = 240

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 56/169 (33%), Positives = 84/169 (49%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRXPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215

[161][TOP]
>UniRef100_Q1ACU9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Berberidopsis
           corallina RepID=Q1ACU9_9MAGN
          Length = 240

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 55/169 (32%), Positives = 86/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    +  + +  + + +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPTYMLPEHVEGLKTILEFSNVFEAEIRKLEADRYQLGTEIATTGDNSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F+V     SD+ P++IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFEVDLRRPSDMHPTEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------LLSTEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDW 215

[162][TOP]
>UniRef100_Q1ACT3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Nelumbo
           nucifera RepID=Q1ACT3_NELNU
          Length = 240

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 56/169 (33%), Positives = 84/169 (49%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNNWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215

[163][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
           RepID=O04144_9VIRI
          Length = 613

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 55/170 (32%), Positives = 86/170 (50%)
 Frame = +3

Query: 33  QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
           QE  +  Y+      D     +  +++  E  QL++DR  L  E+  TG++  PL VNI+
Sbjct: 431 QEDWSPDYMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGDSSWPLPVNIK 490

Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
           RLIWNA++IF +     SD++P  +V  ++ L  R +V+  D     D I+RE       
Sbjct: 491 RLIWNAQKIFKIDLRKPSDMNPMDVVDGMDKLQERLKVVVGD-----DHISRE------- 538

Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          AQ NATL F   +R++++SK VL ++RL  +AF W
Sbjct: 539 ---------------AQKNATLFFNCLLRSTMSSKQVLKDYRLNMEAFQW 573

[164][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
            RepID=Q9XZS2_DROMD
          Length = 1889

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +      + +I    +  + L  EW  L  DRD LR  +F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDEVIKEITDSSEAIQDLESEWDNLMHDRDNLR-VIFPNGDSKVVLPCNL 975

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T  +                
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[165][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
            RepID=B7PJA3_IXOSC
          Length = 1937

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/144 (35%), Positives = 80/144 (55%)
 Frame = +3

Query: 111  LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 290
            L KEW +LK+DR+ LR  +F TG++K+ L  N++R++WNA++IF V     +DLSP ++V
Sbjct: 952  LEKEWERLKRDREALR-TIFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTDLSPLRVV 1010

Query: 291  RXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 470
            + VE L+ +  ++  ++                            LS  A  NATLLF+ 
Sbjct: 1011 QGVEELVKKLVIVPGED---------------------------HLSIQANENATLLFRS 1043

Query: 471  HVRASLASKVVLSEHRLTRKAFTW 542
             +RA+L SK V  E RL+ ++F W
Sbjct: 1044 LLRATLCSKRVAEEFRLSTESFEW 1067

[166][TOP]
>UniRef100_A9QMT4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis sp.
           JU274 RepID=A9QMT4_9PELO
          Length = 280

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 50/163 (30%), Positives = 88/163 (53%)
 Frame = +3

Query: 54  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
           + ++  + +I    +  +L+ +EWAQL++DR  LR ++F  G+AK+ L  N+ RLIWNA+
Sbjct: 137 FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 195

Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
           +IF V     ++L+P++++  V   L +  ++ S ED                       
Sbjct: 196 KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED----------------------- 231

Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               +S+ AQ NATLL  + +R++L SK + S ++L  +AF W
Sbjct: 232 ---RISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEW 271

[167][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
           EM434 RepID=A9QMQ7_9BILA
          Length = 398

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 53/174 (30%), Positives = 90/174 (51%)
 Frame = +3

Query: 21  DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200
           DL  ++S    Y ++   +++    +  +    EW QL++DR  LR ++F +G+AK+ L 
Sbjct: 132 DLSDEKSLRKMY-TEDVQHELQGSSEALKEAEDEWNQLEEDRRLLR-KIFPSGDAKIVLP 189

Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380
            N++RLIWNA++IF V     +DL+P +++  V   L +  ++ S ED            
Sbjct: 190 CNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGVR-ELSKKLIIVSGED------------ 236

Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          +S+ AQ NATLL  + +R++L SK + + HRL  +AF W
Sbjct: 237 --------------RISKQAQYNATLLMNILIRSTLCSKKMATSHRLNSEAFEW 276

[168][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
           RepID=A9QME6_9PELO
          Length = 526

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 50/163 (30%), Positives = 88/163 (53%)
 Frame = +3

Query: 54  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
           + ++  + +I    +  +L+ +EWAQL++DR  LR ++F  G+AK+ L  N+ RLIWNA+
Sbjct: 39  FYTEDTVREIQGSTEALKLVEEEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQ 97

Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
           +IF V     ++L+P++++  V   L +  ++ S ED                       
Sbjct: 98  KIFKVETRKLTNLNPTRVIDGVR-NLSKKLIIVSGED----------------------- 133

Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               +S+ AQ NATLL  + +R++L SK + S ++L  +AF W
Sbjct: 134 ---RISKQAQYNATLLMNILLRSTLCSKKMASTYKLNAEAFEW 173

[169][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
          Length = 1970

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[170][TOP]
>UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa
            RepID=Q2PYR6_9FUNG
          Length = 1013

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 57/162 (35%), Positives = 83/162 (51%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L  + L +I     V  +L  E+A+L  DR  +R  + K+G  K PL +N+ERLI  A++
Sbjct: 850  LDFSILKNIEGNEAVQRVLDDEFAKLADDRRMMREFILKSGTDKQPLPLNVERLIKIAQQ 909

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
             F++     S+L+P +IV  V+ L      +   ED                        
Sbjct: 910  TFNIDVRRPSNLNPVEIVNLVKSLTESRIPVIRGED------------------------ 945

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              +LS  AQ NATLLFQ+H+RASLA+K V+ E  LT++AF W
Sbjct: 946  --QLSVEAQTNATLLFQIHLRASLATKRVIEEFHLTKEAFDW 985

[171][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
            RepID=RPB1_MOUSE
          Length = 1970

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[172][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
            RepID=RPB1_HUMAN
          Length = 1970

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 51/162 (31%), Positives = 85/162 (52%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[173][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase n=1 Tax=Vitis
            vinifera RepID=UPI0001985649
          Length = 1848

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 57/169 (33%), Positives = 85/169 (50%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 922  ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKR 981

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
            LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D     D I+ E        
Sbjct: 982  LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME-------- 1028

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 1029 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 1063

[174][TOP]
>UniRef100_Q1ACU7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Cissus
           tuberosa RepID=Q1ACU7_9MAGN
          Length = 240

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 55/169 (32%), Positives = 84/169 (49%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+   V+             
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLISVE------------- 180

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 181 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215

[175][TOP]
>UniRef100_Q1ACS4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis
           piasezkii RepID=Q1ACS4_9MAGN
          Length = 240

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 57/169 (33%), Positives = 85/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D     D I+ E        
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME-------- 180

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 181 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215

[176][TOP]
>UniRef100_B7SNX3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Persea americana
            RepID=B7SNX3_PERAE
          Length = 1009

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 56/169 (33%), Positives = 84/169 (49%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 840  ENWNPGYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 899

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
            LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 900  LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 941

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                      LS  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 942  ---------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 981

[177][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7NVN7_VITVI
          Length = 1010

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 57/169 (33%), Positives = 85/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 159 ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKR 218

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D     D I+ E        
Sbjct: 219 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD-----DLISME-------- 265

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 266 --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 300

[178][TOP]
>UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Suberites fuscus RepID=Q2N162_9METZ
          Length = 260

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 53/157 (33%), Positives = 81/157 (51%)
 Frame = +3

Query: 72  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
           + D+ +       L  EW QL +DR+ +R  VF TG +K+ L VN+ RLIWNA++IF V 
Sbjct: 87  VRDLLTSSTAQTELESEWQQLCQDREIVR-SVFPTGNSKIVLPVNLNRLIWNAQKIFHVD 145

Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
              ++DL P K+V  V  L ++  ++  ++                           ELS
Sbjct: 146 IRGQTDLHPLKVVEGVRDLSNKLIIVQGED---------------------------ELS 178

Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
           + AQ NATLLF+  +R+ L +K +  EH+L  +AF W
Sbjct: 179 KQAQTNATLLFKSLLRSVLCTKKMSEEHKLNLEAFEW 215

[179][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
            RepID=Q17085_ARTSA
          Length = 1341

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSG----GDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
            + SN   L +    D+        +V   + KEW  L KDR+ LR +VF +GE K+ L  
Sbjct: 835  DPSNERQLRKTFTEDVTKSLLGDSEVITEIEKEWEALVKDREALR-KVFPSGENKVVLPC 893

Query: 204  NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
            N++R+IWNA++ F + +   SDLSP ++++ V  LL +  V+ + ED             
Sbjct: 894  NLQRMIWNAQKTFHINKRMPSDLSPLRVIQGVRDLL-KNCVIVNGED------------- 939

Query: 384  DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         +LS+ A  NATLLFQ  VR++L +K +  E+RL  +AF W
Sbjct: 940  -------------KLSKQANENATLLFQCLVRSTLCTKRLADEYRLNTEAFEW 979

[180][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
            aggregatum RepID=Q2PYS6_9FUNG
          Length = 1016

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 56/150 (37%), Positives = 77/150 (51%)
 Frame = +3

Query: 87   SGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRS 266
            S G     L +E+ QL+KDR+ LR  +FK G +  PL VN++RLIWNA+  F+V     +
Sbjct: 864  SDGLTQNRLDQEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWNAQNQFEVGPRKPT 923

Query: 267  DLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQL 446
            DL P  I   VE LL +  V+  ++                            LS  AQ 
Sbjct: 924  DLHPLHITESVEQLLDKLVVVRGND---------------------------PLSVEAQK 956

Query: 447  NATLLFQVHVRASLASKVVLSEHRLTRKAF 536
            NATLLFQ+ VR++LA++ VL E  L  K+F
Sbjct: 957  NATLLFQILVRSTLATRRVLEEFHLNSKSF 986

[181][TOP]
>UniRef100_Q1ACU4 RNA polymerase II largest subunit (Fragment) n=1 Tax=Gunnera
           chilensis RepID=Q1ACU4_GUNCH
          Length = 240

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 55/169 (32%), Positives = 85/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     +S  AQ NATL F + +R++ ASK VL+E+RLTR+AF W
Sbjct: 176 ---------LMSMEAQKNATLFFNILLRSTFASKRVLNEYRLTREAFEW 215

[182][TOP]
>UniRef100_C0JPA2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichoplax adhaerens
           RepID=C0JPA2_TRIAD
          Length = 625

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 57/163 (34%), Positives = 83/163 (50%)
 Frame = +3

Query: 54  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
           YL    +  I +  +V E L  E+ QL KDR+ +R  + + G++++ L VN+ RLIWNA+
Sbjct: 460 YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 518

Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
           +IF V     SDL P K++  V   L R  V+   ED                       
Sbjct: 519 KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED----------------------- 554

Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               +S+ AQ NATLLF + +R+ L+SK V  E+ LT +AF W
Sbjct: 555 ---RISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDW 594

[183][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
            RepID=B3RM26_TRIAD
          Length = 1784

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 57/163 (34%), Positives = 83/163 (50%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            YL    +  I +  +V E L  E+ QL KDR+ +R  + + G++++ L VN+ RLIWNA+
Sbjct: 921  YLHGNIVRSIITDAEVKEKLQSEFEQLSKDRNAVR-SILQNGDSRVALPVNLNRLIWNAQ 979

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            +IF V     SDL P K++  V   L R  V+   ED                       
Sbjct: 980  KIFHVDPRKSSDLHPMKVIDDV-CELSRKLVIVHGED----------------------- 1015

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                +S+ AQ NATLLF + +R+ L+SK V  E+ LT +AF W
Sbjct: 1016 ---RISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDW 1055

[184][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
           RepID=A9QMF9_9BILA
          Length = 618

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 2/171 (1%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHS--GGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
           E +   + ++  ++D+      D  E +  EWAQL++DR  LR ++F TG AK+ L  N+
Sbjct: 125 EKTMKKFFTEDVIHDLQGPDSKDAIETVEAEWAQLEEDRRLLR-KIFPTGNAKVVLPCNL 183

Query: 210 ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
           +RLIWN ++IF V     + L+P K++  V+ L  +  +++ D+                
Sbjct: 184 QRLIWNXQKIFRVETRKPTSLNPLKVISGVQELSKKLIIVSGDD---------------- 227

Query: 390 SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                       +S+ AQ NATLL  + +R++L SK + S ++L  +AF W
Sbjct: 228 -----------SISKQAQYNATLLMNILLRSTLCSKRMASMYKLNSEAFEW 267

[185][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMF5_9BILA
          Length = 630

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 50/161 (31%), Positives = 83/161 (51%)
 Frame = +3

Query: 60  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
           ++  + D+ S  D  + +  EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 136 TEEVIRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 194

Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
           F V     +DL P +++  V  +  +  ++   ED                         
Sbjct: 195 FHVETRKPTDLHPLRVIEGVRDMAKKL-IIVGGED------------------------- 228

Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             +S+ AQ NATLL  + VR++L SK +   ++L  +AF W
Sbjct: 229 -RISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEW 268

[186][TOP]
>UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
            RepID=Q2PYS1_9FUNG
          Length = 1015

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 51/157 (32%), Positives = 80/157 (50%)
 Frame = +3

Query: 72   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
            L D+        +L +E+ QL  DR  LR  +F +G+   PL  N++RL+WNA+ IF + 
Sbjct: 858  LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLKRLVWNAQNIFHID 917

Query: 252  QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
            +   S+L P +I+  V+LL+ R  V+   +                           +LS
Sbjct: 918  KRKPSNLHPLQIIEGVKLLIDRLVVVRGSD---------------------------KLS 950

Query: 432  ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              AQLNATLL+Q  +R++L++K VL +  L  +AF W
Sbjct: 951  NEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEW 987

[187][TOP]
>UniRef100_Q2PYQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endogone pisiformis
            RepID=Q2PYQ9_9FUNG
          Length = 845

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 56/154 (36%), Positives = 82/154 (53%)
 Frame = +3

Query: 81   IHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQND 260
            I    DV  LL +E+ QL++DRD L   +FKTG+ K PL  N++RLI NA++IF + +  
Sbjct: 691  IEGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLITNAQQIFHIDRRK 750

Query: 261  RSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETA 440
             SDL+P  I+  V  L                  + E+L   GS          ++S  A
Sbjct: 751  PSDLNPVNIIEGVRKL------------------SEELLVVRGS---------DKISVEA 783

Query: 441  QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
            Q NATLL+Q+ +R++ ++K VL E  L   AFT+
Sbjct: 784  QRNATLLYQILLRSTFSTKRVLEEFHLNSAAFTY 817

[188][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 8 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1C
          Length = 1719

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 50/157 (31%), Positives = 83/157 (52%)
 Frame = +3

Query: 72   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
            + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF + 
Sbjct: 933  VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991

Query: 252  QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
                SDL P K+V  V+ L  +  ++  D+                            LS
Sbjct: 992  PRLPSDLHPIKVVEGVKELSKKLVIVNGDD---------------------------PLS 1024

Query: 432  ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1025 RQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1061

[189][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 7 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1B
          Length = 1858

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 50/157 (31%), Positives = 83/157 (52%)
 Frame = +3

Query: 72   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
            + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF + 
Sbjct: 933  VKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHIN 991

Query: 252  QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
                SDL P K+V  V+ L  +  ++  D+                            LS
Sbjct: 992  PRLPSDLHPIKVVEGVKELSKKLVIVNGDD---------------------------PLS 1024

Query: 432  ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1025 RQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1061

[190][TOP]
>UniRef100_Q71ET6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Magnolia x soulangeana
            RepID=Q71ET6_MAGSO
          Length = 1010

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 55/166 (33%), Positives = 82/166 (49%)
 Frame = +3

Query: 45   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
            N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++RLIW
Sbjct: 844  NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903

Query: 225  NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
            NA++ F V     SD+ P +IV  V+ L  R +V+  D+                     
Sbjct: 904  NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942

Query: 405  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                   LS  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 943  ------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 982

[191][TOP]
>UniRef100_Q1L5Y6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum
            RepID=Q1L5Y6_SOLLC
          Length = 773

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 55/166 (33%), Positives = 83/166 (50%)
 Frame = +3

Query: 45   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
            N  Y+   A+ D+    ++  +   E  +L+ DR  L  E+  TG+   PL VNI+RL+ 
Sbjct: 602  NPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVL 661

Query: 225  NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
            NA++ F +     SD+ P +IV  V+ L  R +V+  D+                     
Sbjct: 662  NAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 700

Query: 405  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                   LS  AQ NATL F + +R++LASK VL E+RL+R+AF W
Sbjct: 701  ------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEW 740

[192][TOP]
>UniRef100_Q1ACT7 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia
           integrifolia RepID=Q1ACT7_MACIN
          Length = 240

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 56/169 (33%), Positives = 83/169 (49%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           ES N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ESWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL   + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSMEAQKNATLFLNILLRSTFASKRVLKEYRLTREAFEW 215

[193][TOP]
>UniRef100_Q1ACT6 RNA polymerase II largest subunit (Fragment) n=1 Tax=Macadamia
           integrifolia RepID=Q1ACT6_MACIN
          Length = 240

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 56/169 (33%), Positives = 84/169 (49%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TGE   P+ VN++R
Sbjct: 74  ENWNPNYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F +     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKLDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATLLF + +R++ ASK VL E+ LTR+AF W
Sbjct: 176 ---------FLSTEAQKNATLLFNILLRSTFASKRVLKEYGLTREAFDW 215

[194][TOP]
>UniRef100_B7SNX0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Liriodendron
            tulipifera RepID=B7SNX0_LIRTU
          Length = 1010

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 55/166 (33%), Positives = 82/166 (49%)
 Frame = +3

Query: 45   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
            N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++RLIW
Sbjct: 844  NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903

Query: 225  NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
            NA++ F V     SD+ P +IV  V+ L  R +V+  D+                     
Sbjct: 904  NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942

Query: 405  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                   LS  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 943  ------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 982

[195][TOP]
>UniRef100_B7SNW9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Illicium parviflorum
            RepID=B7SNW9_ILLPA
          Length = 1013

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 55/166 (33%), Positives = 82/166 (49%)
 Frame = +3

Query: 45   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
            N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++RLIW
Sbjct: 847  NPSYMLPEHVKDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIW 906

Query: 225  NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
            NA++ F V     SD+ P +IV  V+ L  R +V+  D+                     
Sbjct: 907  NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 945

Query: 405  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                   LS  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 946  ------FLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985

[196][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
            RepID=Q9XZU9_DROSU
          Length = 1889

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +      + ++    +  + L  EW  L  DRD LR  +F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T  +                
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[197][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
            RepID=Q9XZS1_DROGU
          Length = 1889

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
 Frame = +3

Query: 42   SNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNI 209
            SN  Y+ +      + ++    +  + L  EW  L  DRD LR  +F  G++K+ L  N+
Sbjct: 917  SNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMHDRDNLR-VIFPNGDSKVVLPCNL 975

Query: 210  ERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDG 389
            +R+IWN ++IF + +   +DLSP ++++ V+ LL R  ++T  +                
Sbjct: 976  QRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGAD---------------- 1019

Query: 390  SASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                        +S+ A  NATLLFQ  +R++L +K V  E RL+ +AF W
Sbjct: 1020 -----------RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEW 1059

[198][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q9NJN3_ARMVU
          Length = 433

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
 Frame = +3

Query: 21  DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 188
           D +  + +N  YL    ++  + ++    +   +L  EW +L++DR  LR +VF  G+ K
Sbjct: 75  DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 133

Query: 189 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAR 368
           + L  N+ER+IWN ++IF + +  ++DLSP K+V  V   L +  +++ ++         
Sbjct: 134 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGED--------- 184

Query: 369 EMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                              +S  A  NATLLF   VR++L +K V  E+RLT +AF W
Sbjct: 185 ------------------RISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNW 224

[199][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q6JU60_ARMVU
          Length = 736

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
 Frame = +3

Query: 21  DLHLQESSNSPYL----SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAK 188
           D +  + +N  YL    ++  + ++    +   +L  EW +L++DR  LR +VF  G+ K
Sbjct: 378 DKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQEDRVALR-QVFPKGDTK 436

Query: 189 LPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAR 368
           + L  N+ER+IWN ++IF + +  ++DLSP K+V  V   L +  +++ ++         
Sbjct: 437 VVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRKCMIVSGED--------- 487

Query: 369 EMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                              +S  A  NATLLF   VR++L +K V  E+RLT +AF W
Sbjct: 488 ------------------RISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNW 527

[200][TOP]
>UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
            RepID=A1YIB6_9FUNG
          Length = 1018

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 51/157 (32%), Positives = 79/157 (50%)
 Frame = +3

Query: 72   LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
            L D+        +L +E+ QL  DR  LR  +F +G+   PL  N+ RL+WNA+ IF + 
Sbjct: 856  LKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWNAQNIFHID 915

Query: 252  QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
            +   S+L P +I+  V+LL+ R  V+   +                           +LS
Sbjct: 916  KRKPSNLHPLQIIEGVKLLIDRLIVVRGSD---------------------------KLS 948

Query: 432  ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              AQLNATLL+Q  +R++L++K VL +  L  +AF W
Sbjct: 949  NEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEW 985

[201][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF13
          Length = 1932

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 53/162 (32%), Positives = 86/162 (53%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+  L +  V+ + ED                        
Sbjct: 993  IFHINPRLPSDLHPIKVVDGVK-ELSKKLVIVNGED------------------------ 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[202][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF12
          Length = 1970

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 53/162 (32%), Positives = 86/162 (53%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEELVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL P K+V  V+  L +  V+ + ED                        
Sbjct: 993  IFHINPRLPSDLHPIKVVDGVK-ELSKKLVIVNGED------------------------ 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[203][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1A
          Length = 1767

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 2/164 (1%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV--NIERLIWNA 230
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+P+ +  N+ R+IWNA
Sbjct: 920  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVPVVLPCNLLRMIWNA 978

Query: 231  KRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQD 410
            ++IF +     SDL P K+V  V+ L  +  ++  D+                       
Sbjct: 979  QKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP---------------------- 1016

Query: 411  EALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                 LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1017 -----LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1055

[204][TOP]
>UniRef100_Q1ACU8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Buxus
           sempervirens RepID=Q1ACU8_BUXSE
          Length = 240

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 55/169 (32%), Positives = 84/169 (49%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ +  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWSPSYMLPEHVEDLKTIREFRNVFDAEVQKLQADRFQLGTEIATTGDNNWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------FLSTEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215

[205][TOP]
>UniRef100_Q1ACS5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Tetracentron
           sinense RepID=Q1ACS5_9MAGN
          Length = 240

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 55/169 (32%), Positives = 83/169 (49%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+    + D+ +  +   +   E  +L  DR  L  E+  TG+   P+ VN++R
Sbjct: 74  ENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLAADRCQLGTEIATTGDNSWPMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F V     SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     +S  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 176 ---------LMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 215

[206][TOP]
>UniRef100_Q1ACS3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Vitis
           piasezkii RepID=Q1ACS3_9MAGN
          Length = 240

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 55/169 (32%), Positives = 88/169 (52%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+ N  Y+ +    D+ +  +   +   E  +L+ DR+ L  E+  TG++   + VN++R
Sbjct: 74  ENWNPNYMFREHAEDLKTIQEFRNVFDAEVQKLEADRNQLGTEIASTGDSFWSMPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           LIWNA++ F +     SD+ P +IV  V+ L  R +V+  D     D I+ E        
Sbjct: 134 LIWNAQKTFKIDLRRSSDMHPMEIVETVDKLQERLKVVPGD-----DLISME-------- 180

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         AQ NATLLF + +R++ ASK VL+E+RL+R+AF W
Sbjct: 181 --------------AQKNATLLFNILLRSTFASKRVLNEYRLSREAFDW 215

[207][TOP]
>UniRef100_B7SNW7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ceratophyllum demersum
            RepID=B7SNW7_CERDE
          Length = 1010

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 55/166 (33%), Positives = 81/166 (48%)
 Frame = +3

Query: 45   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
            N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++RLIW
Sbjct: 844  NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 903

Query: 225  NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
            NA++ F V     SD+ P +IV  V+ L  R +V+  D+                     
Sbjct: 904  NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942

Query: 405  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                   LS  AQ NATL F + +R + ASK VL E+RLTR+AF W
Sbjct: 943  ------FLSMEAQKNATLFFNILLRTTFASKRVLKEYRLTREAFEW 982

[208][TOP]
>UniRef100_B7SNW6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Beta vulgaris
            RepID=B7SNW6_BETVU
          Length = 1012

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 55/166 (33%), Positives = 81/166 (48%)
 Frame = +3

Query: 45   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
            N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++RLIW
Sbjct: 846  NPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIW 905

Query: 225  NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
            NA++ F V     SD+ P +IV  V+ L  R +V+  D+                     
Sbjct: 906  NAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDD--------------------- 944

Query: 405  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                   LS  AQ NATL F + +R + ASK VL E+RLTR+AF W
Sbjct: 945  ------FLSMEAQKNATLFFNILLRTTFASKRVLKEYRLTREAFEW 984

[209][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
            RepID=Q7Q3C6_ANOGA
          Length = 1878

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 49/161 (30%), Positives = 83/161 (51%)
 Frame = +3

Query: 60   SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
            ++  + ++     V + +  E+ QL +DR+ LR ++F  G++K+ L  N++R+IWN ++I
Sbjct: 925  NEDVIKELTETSSVIQEIEAEYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKI 983

Query: 240  FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
            F + +   +DLSP K+++ V  LL R  ++   +                          
Sbjct: 984  FHINKRSPTDLSPLKVIQGVRDLLQRCVIVAGTD-------------------------- 1017

Query: 420  KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
              LS+ A  NATLLFQ  VR++L +K V  E RL  +AF W
Sbjct: 1018 -RLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEW 1057

[210][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMP7_9BILA
          Length = 440

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 50/157 (31%), Positives = 81/157 (51%)
 Frame = +3

Query: 72  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
           + D+ S  D  + +  EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V 
Sbjct: 103 IRDLQSNPDALKEVECEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVE 161

Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
               +DL P +++  V  +  +  ++   ED                           +S
Sbjct: 162 TRKPTDLHPLRVIEGVRDMAKKL-IIVGGED--------------------------RIS 194

Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
           + AQ NATLL  + VR++L SK +   ++L  +AF W
Sbjct: 195 KQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEW 231

[211][TOP]
>UniRef100_A9QMP1 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis mediterranea
           RepID=A9QMP1_9PELO
          Length = 276

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 46/161 (28%), Positives = 83/161 (51%)
 Frame = +3

Query: 60  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
           ++  + D+    +  + + +EW QL+ DR  LR ++F TG+AK+ L  N++RLIWNA++I
Sbjct: 127 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 185

Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
           F V     +DLSP +++  V  +  +  ++  ++                          
Sbjct: 186 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED-------------------------- 219

Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             +S+ AQ NATLL  + +R++L SK +   ++L  +AF W
Sbjct: 220 -RISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEW 259

[212][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
           mediterranea RepID=A9QME7_9PELO
          Length = 618

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 46/161 (28%), Positives = 83/161 (51%)
 Frame = +3

Query: 60  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
           ++  + D+    +  + + +EW QL+ DR  LR ++F TG+AK+ L  N++RLIWNA++I
Sbjct: 141 TEDVIRDLQGSSEALKQIEEEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKI 199

Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
           F V     +DLSP +++  V  +  +  ++  ++                          
Sbjct: 200 FHVETRKPTDLSPLRVIEGVRDMSEKLIIVAGED-------------------------- 233

Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             +S+ AQ NATLL  + +R++L SK +   ++L  +AF W
Sbjct: 234 -RISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEW 273

[213][TOP]
>UniRef100_Q71EU1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zamia muricata
            RepID=Q71EU1_9SPER
          Length = 1013

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 52/169 (30%), Positives = 84/169 (49%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  +G+   P+ VN++R
Sbjct: 844  ENWNPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKR 903

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
            LIWNA++ F +     SD+ P +IV  V+ L  R +V+  D+   ++             
Sbjct: 904  LIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------- 950

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 951  --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985

[214][TOP]
>UniRef100_Q71ET5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nymphaea odorata
            RepID=Q71ET5_NYMOD
          Length = 1013

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 56/169 (33%), Positives = 86/169 (50%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E+ +  YL    + D+ +  ++ ++   E  +L+ DR  L  E+  TG+   P+ VN++R
Sbjct: 844  ENWDPSYLQPDFVEDLKTIKELQDVFHAEVQKLETDRRQLATEIATTGDNSWPMPVNLKR 903

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
            LIWNA++ F V     SD+ P +IV  V+ L  R +V+   EDA                
Sbjct: 904  LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPG-EDA---------------- 946

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                      +S  AQ NATL F + +R++ ASK V  E+RLTR+AF W
Sbjct: 947  ----------MSMEAQKNATLFFNILLRSTFASKRVSKEYRLTREAFDW 985

[215][TOP]
>UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
            RepID=Q1L5Y7_ANTMA
          Length = 780

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 56/166 (33%), Positives = 82/166 (49%)
 Frame = +3

Query: 45   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
            N  Y+   A+ D+ +  ++  +   E  +L+ DR  L   +  TG+   PL VNI RL+ 
Sbjct: 602  NPSYMLSEAVEDLKTIREIRSVFDAEVQKLEADRFQLGTGIATTGDNSWPLPVNIRRLVL 661

Query: 225  NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
            NA++ F V     SD+ P +IV  V+ L  R +V+  D+                     
Sbjct: 662  NAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVVGDD--------------------- 700

Query: 405  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                   LS  AQ NATL F + +R++LASK VL E+RLTR+AF W
Sbjct: 701  ------YLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEW 740

[216][TOP]
>UniRef100_Q1ACT9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Iresine
           herbstii RepID=Q1ACT9_IREHE
          Length = 240

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 51/163 (31%), Positives = 85/163 (52%)
 Frame = +3

Query: 54  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
           Y+ +  ++D+ +  +   +   E  +L+ DR  L  ++  TG+   PL VN++RL+WNA+
Sbjct: 80  YMLKEHVDDLKTIREFRNVFDAEVQKLEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQ 139

Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
           + F V   ++SD+ P +IV  V+ L  R +V+  ++                        
Sbjct: 140 KTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGED------------------------ 175

Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS+ AQ NATL F + +R++LASK VL E +L R+AF W
Sbjct: 176 ---FLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEW 215

[217][TOP]
>UniRef100_Q1ACS9 RNA polymerase II largest subunit (Fragment) n=1 Tax=Ruschia herrei
           RepID=Q1ACS9_9CARY
          Length = 240

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 53/169 (31%), Positives = 85/169 (50%)
 Frame = +3

Query: 36  ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
           E+    Y+ +  ++D+ +  +   +   E  +L+ DR  L  E+  TG+   PL VN++R
Sbjct: 74  ENWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPLPVNLKR 133

Query: 216 LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
           L+WNA++ F V   ++SD+ P +IV  V+ L  R +V+  D+                  
Sbjct: 134 LLWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGDD------------------ 175

Query: 396 SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                     LS  AQ NATL F + +R++ ASK VL E +L R+AF W
Sbjct: 176 ---------FLSIEAQKNATLFFNILLRSTFASKRVLKEFKLNREAFEW 215

[218][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           plicata RepID=Q6E226_9PELO
          Length = 636

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 49/161 (30%), Positives = 82/161 (50%)
 Frame = +3

Query: 60  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
           + + + +I    D  E +  EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 144 TDSVIREIQESEDAIEKVESEWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 202

Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
           F V      DLSP  ++  V  +  +  +++ ++D                         
Sbjct: 203 FKVDTRKPVDLSPLHVIDGVREISSKLIIVSGNDD------------------------- 237

Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             +S  AQ NATLL  + +R++L SK + +  +L  +AF W
Sbjct: 238 --ISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDW 276

[219][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
           halicti RepID=P90678_9BILA
          Length = 631

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 47/161 (29%), Positives = 82/161 (50%)
 Frame = +3

Query: 60  SQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRI 239
           ++  + D+ S  +  +    EW QL+ DR  LR ++F  G+AK+ L  N++RLIWNA++I
Sbjct: 140 TEDVIRDVQSSSESIKEAELEWMQLQDDRQLLR-KIFPKGDAKIVLPCNLQRLIWNAQKI 198

Query: 240 FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
           F V     +DL+P ++++ V  +  +  ++  D+                          
Sbjct: 199 FHVETRKVTDLNPVRVIQGVREVSKKLIIVGGDD-------------------------- 232

Query: 420 KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             +S  AQ NATLL  + VR++L +K +  +H+L  +AF W
Sbjct: 233 -RISVQAQYNATLLMNILVRSTLCAKAMAEKHKLNAEAFEW 272

[220][TOP]
>UniRef100_A9QMQ0 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
           RepID=A9QMQ0_PRIPA
          Length = 181

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 49/141 (34%), Positives = 75/141 (53%)
 Frame = +3

Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299
           EW QL++DR+ LR  +F  G+AK+ L  N++RLIWNA++IF V     +DLSP +++  V
Sbjct: 57  EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 115

Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479
              + +  ++   ED                           +S+ AQ NATLL  + VR
Sbjct: 116 R-EVSKKLIIVGGED--------------------------RISKQAQYNATLLMNILVR 148

Query: 480 ASLASKVVLSEHRLTRKAFTW 542
           ++L SK +  +HRL  +AF W
Sbjct: 149 STLCSKQLAEKHRLNSEAFEW 169

[221][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
           RepID=A9QMF6_PRIPA
          Length = 583

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 49/141 (34%), Positives = 75/141 (53%)
 Frame = +3

Query: 120 EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXV 299
           EW QL++DR+ LR  +F  G+AK+ L  N++RLIWNA++IF V     +DLSP +++  V
Sbjct: 127 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 185

Query: 300 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 479
              + +  ++   ED                           +S+ AQ NATLL  + VR
Sbjct: 186 R-EVSKKLIIVGGED--------------------------RISKQAQYNATLLMNILVR 218

Query: 480 ASLASKVVLSEHRLTRKAFTW 542
           ++L SK +  +HRL  +AF W
Sbjct: 219 STLCSKQLAEKHRLNSEAFEW 239

[222][TOP]
>UniRef100_Q2PYS0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entomophthora muscae
            RepID=Q2PYS0_9FUNG
          Length = 1007

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 56/144 (38%), Positives = 77/144 (53%)
 Frame = +3

Query: 111  LAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 290
            LA E+AQL  DR+ LR+ VF +GE + P+ VNI+RLI NA+ +F    +  ++L PS ++
Sbjct: 863  LADEFAQLVSDRNLLRNFVFTSGENEWPMPVNIKRLIRNAQVMFHCHAHRPTNLHPSLVI 922

Query: 291  RXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 470
              VE LL    V+  ++                            LSE A  NAT+LF+V
Sbjct: 923  STVERLLKGLTVIRGND---------------------------ALSEEANTNATILFKV 955

Query: 471  HVRASLASKVVLSEHRLTRKAFTW 542
             VR+ LASK VL E  LT +AF W
Sbjct: 956  LVRSILASKRVLEEFHLTTEAFEW 979

[223][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8Q5I6_MALGO
          Length = 1607

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 52/149 (34%), Positives = 79/149 (53%)
 Frame = +3

Query: 96   DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275
            ++ +LL  E+ QL+ DR  LR EVF+T      L +NI RL+ NA++IF +     SDLS
Sbjct: 728  ELEQLLEGEFEQLEADRKTLRTEVFQTDRVDTYLPLNIARLVLNAQQIFHIDPRKPSDLS 787

Query: 276  PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455
            P +IV  ++ +L+   V+  D+                           ++S   Q NAT
Sbjct: 788  PFEIVDGLKRVLNNLLVVRGDD---------------------------KISRVMQENAT 820

Query: 456  LLFQVHVRASLASKVVLSEHRLTRKAFTW 542
            LLF++H+R+ L SK V+  H LTR+A+ W
Sbjct: 821  LLFKIHLRSFLCSKQVIEVHHLTREAWEW 849

[224][TOP]
>UniRef100_Q71ET9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra
            RepID=Q71ET9_9CONI
          Length = 1013

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 51/170 (30%), Positives = 84/170 (49%)
 Frame = +3

Query: 33   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
            QE+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  +G+   PL VN++
Sbjct: 843  QENWNPSYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGMEIAPSGDNSWPLPVNLK 902

Query: 213  RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
            RLIWN+++ F +     SD+ P +IV  ++ L  R +V+  D+   ++            
Sbjct: 903  RLIWNSQKTFKIDARRPSDMHPMEIVEAIDRLQERLKVVPGDDLMSIE------------ 950

Query: 393  ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                           AQ NATL F + +R++ ASK VL E+ LTR+AF W
Sbjct: 951  ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTREAFEW 985

[225][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
            RepID=Q010D7_OSTTA
          Length = 1673

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 2/168 (1%)
 Frame = +3

Query: 45   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
            N  +LS    +D+     V E++  EW +L+KDR  LR +VF TG+  + L VN++R+IW
Sbjct: 921  NKGWLSNEQASDLAHSTKVREIIDAEWERLQKDRVELR-KVFPTGDPHVHLPVNMKRIIW 979

Query: 225  NAKRIFDVRQ--NDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSAS 398
            NA++ + + +      +LS + ++  V  LL +  V+   +   ++A             
Sbjct: 980  NAQKQYGMYRPGGSEEELSVTHVIESVAELLPKLIVVAGTDPLSIEA------------- 1026

Query: 399  GPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          Q N TLLF  HVRA+LA+K VL +H+LTR  F W
Sbjct: 1027 --------------QRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDW 1060

[226][TOP]
>UniRef100_B7SNW5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asparagus officinalis
            RepID=B7SNW5_ASPOF
          Length = 1009

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 54/163 (33%), Positives = 82/163 (50%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            Y+    + D+ +  +   +   E  +L+ DR  L  ++  TG+   P+ VN++RLIWNA+
Sbjct: 846  YMLPEHVEDLKTIPEFRNVFDAEVQKLEADRFQLGTDIATTGDNTWPMPVNLKRLIWNAQ 905

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            + F V     SD+ P +IV  V+ L  + RV+  D+                        
Sbjct: 906  KTFKVDPRRPSDMHPMEIVEAVDKLQEKLRVVPGDD------------------------ 941

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                LS  AQ NATLLF + +R++ ASK VL E+RLTR+AF W
Sbjct: 942  ---FLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEW 981

[227][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
            RepID=Q25203_9CAEN
          Length = 1343

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 51/162 (31%), Positives = 79/162 (48%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  +  +     + E L  EW QL  DRD  R +VF TG+A++ L  N++R+IWNA++
Sbjct: 848  LKEDVIKGLRGEHRLIEELESEWLQLISDRDSAR-QVFSTGDARIVLPCNLQRMIWNAQK 906

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF + +   SDL P  +V  V  L  R  ++  ++                         
Sbjct: 907  IFRIDKRKPSDLDPINVVSGVRDLCQRLTIVEGED------------------------- 941

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               +S+ A  NATLL +  +R++L +K V  EHRL+  AF W
Sbjct: 942  --MISKQANENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNW 981

[228][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
           RepID=A9QMF2_9PELO
          Length = 629

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 53/174 (30%), Positives = 87/174 (50%)
 Frame = +3

Query: 21  DLHLQESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLA 200
           DL  + S    Y S+  + D+       + + +EW QL++DR  LR ++F  GE+K+ L 
Sbjct: 128 DLSDERSLRRVY-SEDVVRDLLGSSSALKEVEEEWQQLEEDRRLLR-KIFPKGESKVVLP 185

Query: 201 VNIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLP 380
            N++RLIWNA++IF V     + L+P ++V+ V  L  +  ++  D+             
Sbjct: 186 CNLQRLIWNAQKIFKVETRKVTALNPLRVVQGVRDLSKKLIIVMGDD------------- 232

Query: 381 PDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          +S+ AQ NATLL  + +R++L SK +  +HRL   AF W
Sbjct: 233 --------------RISKQAQYNATLLVNILIRSTLCSKQMSEKHRLNESAFDW 272

[229][TOP]
>UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus
            RepID=A1YIB9_ALLMA
          Length = 1008

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 51/149 (34%), Positives = 82/149 (55%)
 Frame = +3

Query: 96   DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275
            +V +LL +E+ QL++DR+ LRH +F  G+A+ PL  NI+R+IWNA+ +F + +   S+L 
Sbjct: 855  EVQQLLDQEYRQLEEDRERLRH-IFPRGDARWPLPGNIQRIIWNAQNLFKIDKTKPSNLH 913

Query: 276  PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455
            P  +V  V  L  +  V+   +                           ++S  AQ NAT
Sbjct: 914  PEYVVNEVRKLCDKLMVIPGTD---------------------------KISVEAQRNAT 946

Query: 456  LLFQVHVRASLASKVVLSEHRLTRKAFTW 542
            LL Q+ VR++LA+K V+ E RL ++AF +
Sbjct: 947  LLSQILVRSTLATKRVIEEFRLDKRAFDY 975

[230][TOP]
>UniRef100_Q2TUN6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba
            RepID=Q2TUN6_GINBI
          Length = 1013

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 52/169 (30%), Positives = 84/169 (49%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  +G+   P+ VN++R
Sbjct: 844  ENWNPGYMLADHVEDLKTIREFRNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVNLKR 903

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
            LIWNA++ F +     SD+ P +IV  V+ L  R +V+  D+   ++             
Sbjct: 904  LIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------- 950

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 951  --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985

[231][TOP]
>UniRef100_B7SNX2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Papaver orientale
            RepID=B7SNX2_PAPOR
          Length = 1010

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 52/163 (31%), Positives = 78/163 (47%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            Y+    + D+ +  +   +   E  +L  DR  L  E+  TG+   P+ VN+ RLIWNA+
Sbjct: 847  YMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRRLIWNAQ 906

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            + F V     SD+ P +IV  ++ L  R +V+  D+                        
Sbjct: 907  KTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVPGDD------------------------ 942

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                +S  AQ NATL F + +R++ ASK VL EH LTR+AF W
Sbjct: 943  ---SMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDW 982

[232][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           oxycercus RepID=A9QMS4_9BILA
          Length = 612

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 48/157 (30%), Positives = 83/157 (52%)
 Frame = +3

Query: 72  LNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVR 251
           + +I    +  + +  EW QLK+DR  LR ++F  G +K+ L  NI+RLIWNA++IF V 
Sbjct: 144 VKEIQGNSNSMKEIDAEWEQLKEDRGLLR-KIFPKGGSKVVLPCNIQRLIWNAQKIFRVD 202

Query: 252 QNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELS 431
             + ++LSP  ++  +  L  +  +++ D+                           ++S
Sbjct: 203 NRNPTELSPLYVIEAIRKLSEKLVIVSGDD---------------------------KIS 235

Query: 432 ETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
           + AQ NATLL  + +R++L SK V  +HRL ++AF +
Sbjct: 236 QQAQYNATLLMNILIRSTLCSKQVAEKHRLNQEAFEY 272

[233][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
            RepID=O35559_CRIGR
          Length = 1970

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 50/162 (30%), Positives = 84/162 (51%)
 Frame = +3

Query: 57   LSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKR 236
            L +  + D+ S   +   L +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++
Sbjct: 934  LQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQK 992

Query: 237  IFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA 416
            IF +     SDL   K+V  V+ L  +  ++  D+                         
Sbjct: 993  IFHINPRLPSDLHSIKVVEGVKELSKKLVIVNGDD------------------------- 1027

Query: 417  LKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               LS  AQ NATLLF +H+R++L S+ +  E RL+ +AF W
Sbjct: 1028 --PLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDW 1067

[234][TOP]
>UniRef100_Q71EU0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cycas revoluta
            RepID=Q71EU0_CYCRE
          Length = 1013

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 51/169 (30%), Positives = 84/169 (49%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E+ N  Y+    + D+ +  +   +   +  +L+ DR  L  E+  +G+   P+ VN++R
Sbjct: 844  ENWNPSYMLPEHVEDLKTIREFQNVFDAQVQKLEADRRQLGTEIAPSGDNSWPMPVNLKR 903

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
            LIWNA++ F +     SD+ P +IV  V+ L  R +V+  D+   ++             
Sbjct: 904  LIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIE------------- 950

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                          AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 951  --------------AQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 985

[235][TOP]
>UniRef100_Q71ET8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Welwitschia mirabilis
            RepID=Q71ET8_WELMI
          Length = 1013

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 51/170 (30%), Positives = 84/170 (49%)
 Frame = +3

Query: 33   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
            QE+ N  Y+    + D+ +  +   +   E   L+ DR  L  E+  +G+   PL VN++
Sbjct: 843  QENWNPGYMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGDNSWPLPVNLK 902

Query: 213  RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
            RLIWNA+++F +     SD+ P +I+  ++ L  R +V+  ++                 
Sbjct: 903  RLIWNAQKLFKIDPRKASDMHPMEIIDAIDKLQERLKVVPGND----------------- 945

Query: 393  ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                       LS  AQ NATL F + +R++ ASK VL E+ LT++AF W
Sbjct: 946  ----------PLSIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFDW 985

[236][TOP]
>UniRef100_Q2TUN7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Podocarpus
            macrophyllus RepID=Q2TUN7_9CONI
          Length = 1013

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 50/170 (29%), Positives = 84/170 (49%)
 Frame = +3

Query: 33   QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
            QE+ N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  +G+   P+ VN++
Sbjct: 843  QENWNPIYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGTEIAPSGDNSCPMPVNLK 902

Query: 213  RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
            RLIWNA++ F +     SD+ P +IV  ++ L  R +V+  D+   ++            
Sbjct: 903  RLIWNAQKTFKIDPRKPSDMHPMEIVEAIDRLQERLKVVPGDDLISIE------------ 950

Query: 393  ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                           AQ NATL F + +R++ ASK VL E+ LT++AF W
Sbjct: 951  ---------------AQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEW 985

[237][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           drosophilae RepID=Q6E224_9PELO
          Length = 633

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 48/163 (29%), Positives = 82/163 (50%)
 Frame = +3

Query: 54  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
           Y S+  + D++   D  E +  EW QL++DR  LR ++F  G+AK+ L  N++RL+WNA+
Sbjct: 141 YYSEDVIRDLNESEDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 199

Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
           +IF V      +LSP  ++  V  L  +  ++   +D                       
Sbjct: 200 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDD----------------------- 236

Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               +S+ AQ NATLL  + +R++L +K + +  +L  +AF W
Sbjct: 237 ----ISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDW 275

[238][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
           RepID=Q6E223_9PELO
          Length = 606

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 48/163 (29%), Positives = 82/163 (50%)
 Frame = +3

Query: 54  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
           Y S+  + D++   D  E +  EW QL++DR  LR ++F  G+AK+ L  N++RL+WNA+
Sbjct: 125 YYSEDVIRDLNESPDAIEKVESEWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQ 183

Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
           +IF V      +LSP  ++  V  L  +  ++   +D                       
Sbjct: 184 KIFKVDMRKPVNLSPLHVIDGVRELSKKLVIVGGSDD----------------------- 220

Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               +S+ AQ NATLL  + +R++L +K + +  +L  +AF W
Sbjct: 221 ----ISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDW 259

[239][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
            RepID=Q25151_9ANNE
          Length = 1337

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 50/163 (30%), Positives = 83/163 (50%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            YL +  L  ++   +V   +  E+ QL +DR  +R ++F +G++K+ L  N++RLIWNA+
Sbjct: 840  YLDEDILKSLNGDANVIAEVESEYKQLLEDRTAIR-QIFPSGDSKIVLPCNLQRLIWNAQ 898

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            +IF +     S+L P KI+  V  L  +  ++  ++                        
Sbjct: 899  KIFRIHTRKPSNLHPVKIIEDVRELSKKFMIVKGED------------------------ 934

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                LS+TA  NATLL  + VR++L SK V+ E  L+ +AF W
Sbjct: 935  ---RLSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEW 974

[240][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=O01375_9BILA
          Length = 631

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 49/142 (34%), Positives = 76/142 (53%)
 Frame = +3

Query: 117 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRX 296
           +EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++IF +     +DLSP +++  
Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 217

Query: 297 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 476
           +   L +  V+ S ED                           +S+ AQ NATLL  + +
Sbjct: 218 IR-ELSKKLVIVSGED--------------------------RISKQAQYNATLLMNILI 250

Query: 477 RASLASKVVLSEHRLTRKAFTW 542
           R++L SK V S H+L  +AF W
Sbjct: 251 RSTLCSKRVASMHKLNNEAFDW 272

[241][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
           inermiformis RepID=A9QMR5_9BILA
          Length = 524

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 50/170 (29%), Positives = 88/170 (51%)
 Frame = +3

Query: 33  QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
           +++ N  Y +   + D+    +  + +  EW QL++DR  LR ++F  G++K+ L  N++
Sbjct: 126 EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 183

Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
           RLIWNA++IF V   ++S L+P +++  V  +  +  V+   ED                
Sbjct: 184 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED---------------- 226

Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                      +S+ AQ NATLL  + VR++L SK +  ++RL  +AF W
Sbjct: 227 ----------RISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEW 266

[242][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=A9QMG6_9BILA
          Length = 633

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 49/142 (34%), Positives = 76/142 (53%)
 Frame = +3

Query: 117 KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRX 296
           +EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++IF +     +DLSP +++  
Sbjct: 163 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 221

Query: 297 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 476
           +   L +  V+ S ED                           +S+ AQ NATLL  + +
Sbjct: 222 IR-ELSKKLVIVSGED--------------------------RISKQAQYNATLLMNILI 254

Query: 477 RASLASKVVLSEHRLTRKAFTW 542
           R++L SK V S H+L  +AF W
Sbjct: 255 RSTLCSKRVASMHKLNNEAFDW 276

[243][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
           RepID=A9QMF4_9BILA
          Length = 597

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 50/170 (29%), Positives = 88/170 (51%)
 Frame = +3

Query: 33  QESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIE 212
           +++ N  Y +   + D+    +  + +  EW QL++DR  LR ++F  G++K+ L  N++
Sbjct: 94  EKALNKVYTADV-VRDLQESPEALKEVEAEWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQ 151

Query: 213 RLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGS 392
           RLIWNA++IF V   ++S L+P +++  V  +  +  V+   ED                
Sbjct: 152 RLIWNAQKIFHVETREKSSLNPLRVIAGVREMSQKL-VIVGGED---------------- 194

Query: 393 ASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                      +S+ AQ NATLL  + VR++L SK +  ++RL  +AF W
Sbjct: 195 ----------RISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEW 234

[244][TOP]
>UniRef100_Q2PYR0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Boothiomyces
            macroporosum RepID=Q2PYR0_9FUNG
          Length = 999

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
 Frame = +3

Query: 63   QAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRI 239
            Q+  ND+ +     ++L +E+ QL KDR  LR+ +FK     K  L VN+ERLIWNA   
Sbjct: 838  QSTYNDLINNPASQDILDREYNQLLKDRATLRNVIFKNSAIDKWTLPVNLERLIWNACHT 897

Query: 240  FDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEAL 419
            F + ++  +DL+P  +++ V  L+    V+  ++                          
Sbjct: 898  FGIDRSKPTDLNPLHVIKSVNELMENLLVVRGND-------------------------- 931

Query: 420  KELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
             +LS  AQ NATLLF + +R++LASK ++ E RL+ +AF W
Sbjct: 932  -QLSIEAQKNATLLFSILLRSTLASKRLIEEFRLSTQAFDW 971

[245][TOP]
>UniRef100_B7SNW8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drimys winteri
            RepID=B7SNW8_DRIWI
          Length = 1010

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 53/166 (31%), Positives = 81/166 (48%)
 Frame = +3

Query: 45   NSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIW 224
            N  Y+    + D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++RLIW
Sbjct: 844  NPSYMVPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGSEIATTGDNSWPMPVNLKRLIW 903

Query: 225  NAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGP 404
            NA++ F V     S + P +IV  V+ L  R +V+  D+                     
Sbjct: 904  NAQKTFKVDLRRPSGMHPMEIVEAVDKLQERLKVVPGDD--------------------- 942

Query: 405  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                   +S  AQ NATL F + +R++ ASK VL E+RLTR+AF W
Sbjct: 943  ------PISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEW 982

[246][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
           elegans RepID=Q6JTX1_9BILA
          Length = 304

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
 Frame = +3

Query: 36  ESSNSPYLSQA----ALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAV 203
           ++SN  YL +      +N I +   V + L +E+ Q+K+DR+ +R ++F TG++++ L  
Sbjct: 54  QTSNERYLRRLYEPDIVNSIMTDAGVPQALEQEFEQMKRDREIIR-KIFPTGDSRVVLPC 112

Query: 204 NIERLIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPP 383
           N++R++WNA++IF ++    +DL P ++V  +  L+ +  V+   ED             
Sbjct: 113 NLQRMVWNAQKIFHIKGRGTTDLHPVRVVEGLNELMKKL-VIVKGED------------- 158

Query: 384 DGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                         LS  AQ NAT+L    +R++L SK +  E+ L  +AF W
Sbjct: 159 -------------RLSREAQENATILMNTMLRSTLCSKRMAEEYHLNTEAFEW 198

[247][TOP]
>UniRef100_A9QMD9 RNA polymerase 2 (Fragment) n=1 Tax=Protorhabditis sp. JB122
           RepID=A9QMD9_9BILA
          Length = 595

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 50/163 (30%), Positives = 84/163 (51%)
 Frame = +3

Query: 54  YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
           + S+  + ++    +    +  EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA+
Sbjct: 102 HYSEDVVRELMGSPEALREVEGEWAQLEEDRRLLR-KIFPNGDAKIVLPCNLQRLIWNAQ 160

Query: 234 RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
           +IF +     +DLSP +++  V   L R  ++ S ED                       
Sbjct: 161 KIFHIELRKPTDLSPLRVIEGVR-ELSRKLIIVSGED----------------------- 196

Query: 414 ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
               +S+ AQ NATLL  + +R++L SK +   ++L  +AF W
Sbjct: 197 ---RISKQAQYNATLLMNILLRSTLCSKKMGMSYKLDSEAFEW 236

[248][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
          Length = 1943

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 49/169 (28%), Positives = 86/169 (50%)
 Frame = +3

Query: 36   ESSNSPYLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIER 215
            E S     ++  + ++    +  + +  EW QL++DR  LR ++F  G+AK+ L  N++R
Sbjct: 992  EKSLRKLYTENVVRELQGSAEALKEVEAEWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQR 1050

Query: 216  LIWNAKRIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSA 395
            +IWNA++IF V     +DL+P +++  V+  L +  V+ S ED                 
Sbjct: 1051 MIWNAQKIFRVELRKPTDLNPLRVIEGVK-ELSKKLVIVSGED----------------- 1092

Query: 396  SGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                      +S+ AQ NATLL  + +R++L +K +  +HRL  + F W
Sbjct: 1093 ---------RISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEW 1132

[249][TOP]
>UniRef100_Q2PYS5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hyaloraphidium
            curvatum RepID=Q2PYS5_HYACU
          Length = 1002

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 55/147 (37%), Positives = 78/147 (53%)
 Frame = +3

Query: 96   DVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLS 275
            +  E +  E+ QL+ DR  LR ++F +GE+  PL  N+ RLI NA+  F +    ++DL 
Sbjct: 853  ETQEAVDGEFEQLENDRKVLRKDIFPSGESSWPLPGNLRRLIDNARIQFGLSDRAKTDLL 912

Query: 276  PSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNAT 455
            P+KIV+ V  LL    V+   +                            LS  AQ NAT
Sbjct: 913  PTKIVQDVRALLAECVVVPGTDG---------------------------LSRQAQANAT 945

Query: 456  LLFQVHVRASLASKVVLSEHRLTRKAF 536
            LL+Q+ VR++LASK VLSE+RLT +AF
Sbjct: 946  LLWQILVRSTLASKRVLSEYRLTSEAF 972

[250][TOP]
>UniRef100_Q71ET7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zea mays
            RepID=Q71ET7_MAIZE
          Length = 1009

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 49/163 (30%), Positives = 82/163 (50%)
 Frame = +3

Query: 54   YLSQAALNDIHSGGDVTELLAKEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAK 233
            Y+    ++D+ +  +   +   E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA+
Sbjct: 846  YMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQ 905

Query: 234  RIFDVRQNDRSDLSPSKIVRXVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDE 413
            + F +     SD+ P +IV  ++ L  R +V+  D+   ++                   
Sbjct: 906  KTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIE------------------- 946

Query: 414  ALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTW 542
                    AQ NATL F + +R++ ASK VL E+RLT++AF W
Sbjct: 947  --------AQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEW 981