AU193146 ( PFL041a03_r )

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[1][TOP]
>UniRef100_B7PVV6 DNA-directed RNA polymerase n=1 Tax=Ixodes scapularis
           RepID=B7PVV6_IXOSC
          Length = 1394

 Score =  258 bits (658), Expect = 3e-67
 Identities = 124/187 (66%), Positives = 150/187 (80%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P      KP RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRLKGKHGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVET-DD 359
           TVISPDPNLR+DQVG+P+ VA+ LTYPERVT+HN   +   V  GPD +PGANF+E+ D 
Sbjct: 367 TVISPDPNLRIDQVGVPVHVAKILTYPERVTQHNLALMRTLVRNGPDVHPGANFLESRDS 426

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           G KR+LRYGNR  +A+ L  G VVERHL DGDVVLFNRQPSLH++SIM+H AKV+PHRTF
Sbjct: 427 GFKRYLRYGNRDLLAQQLRPGDVVERHLRDGDVVLFNRQPSLHKLSIMAHLAKVLPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[2][TOP]
>UniRef100_Q86AQ5 DNA-directed RNA polymerase III subunit rpc1 n=1 Tax=Dictyostelium
           discoideum RepID=RPC1_DICDI
          Length = 1450

 Score =  251 bits (640), Expect = 3e-65
 Identities = 115/186 (61%), Positives = 148/186 (79%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ   A ++NSD   LP      K +RG+SQRLKGKTGRFRGNLSGKRVDFSGR
Sbjct: 300 MEDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSGR 359

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL +D+V +P  +A T+TYPERVT +N +RL   VI GPD +PGAN++   DG
Sbjct: 360 TVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYIIYADG 419

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L++GNR+K A +L +G +VERH++DGD++LFNRQPSLH++SIMSH A+V+P RT R
Sbjct: 420 VKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTLR 479

Query: 543 FNECVC 560
           FNECVC
Sbjct: 480 FNECVC 485

[3][TOP]
>UniRef100_A7SJ34 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
           RepID=A7SJ34_NEMVE
          Length = 1398

 Score =  250 bits (639), Expect = 5e-65
 Identities = 119/187 (63%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P      K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSEMSGIPLNMQPKKGTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+DQV +P+ VA+ LTYPERVT+ N K +   V+ G D +PGANF++  + 
Sbjct: 367 TVISPDPNLRIDQVAVPIHVAKVLTYPERVTQSNLKLMKQLVLNGADQHPGANFIQQRET 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           N KRFL+YGNRK +AK L +G  VERHL+DGDVVLFNRQPSLH++SIM+H A V PHRTF
Sbjct: 427 NTKRFLKYGNRKLIAKQLKIGDTVERHLIDGDVVLFNRQPSLHKLSIMAHLATVRPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[4][TOP]
>UniRef100_C4R7G6 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
           RepID=C4R7G6_PICPG
          Length = 1460

 Score =  248 bits (634), Expect = 2e-64
 Identities = 120/195 (61%), Positives = 153/195 (78%), Gaps = 9/195 (4%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTA--------KPLRGISQRLKGKTGRFRGNLSG 158
           ++ W++LQ+  A ++NSDA N+  L S A        KP+RG  QRLKGK GRFRGNLSG
Sbjct: 312 IEQWDYLQLSVAMYINSDAGNMSMLPSAAGSAGSKSSKPIRGFCQRLKGKQGRFRGNLSG 371

Query: 159 KRVDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA 338
           KRVDFSGRTVISPDPNLR+D+V +P RVA+ LTYPE+VT++N+ +L   V+ GPD +PGA
Sbjct: 372 KRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPEKVTRYNKHKLQQLVLNGPDVHPGA 431

Query: 339 NF-VETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSA 515
           N+ ++ D+ N+R LR+GNR+K+A  L +G +VERHL DGDVVLFNRQPSLHR+SI+SH A
Sbjct: 432 NYLLKRDEQNRRNLRFGNRQKLANTLQIGDIVERHLEDGDVVLFNRQPSLHRLSILSHFA 491

Query: 516 KVVPHRTFRFNECVC 560
           K+ P RTFR NECVC
Sbjct: 492 KIRPWRTFRLNECVC 506

[5][TOP]
>UniRef100_UPI00018665E5 hypothetical protein BRAFLDRAFT_127993 n=1 Tax=Branchiostoma
           floridae RepID=UPI00018665E5
          Length = 1391

 Score =  248 bits (632), Expect = 3e-64
 Identities = 117/187 (62%), Positives = 149/187 (79%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+   +P      KP RG  QRLKGK GRFRGNLSGKRVD+S R
Sbjct: 307 MEDWDFLQLQCALYINSEQGGIPLNMQPKKPTRGFCQRLKGKQGRFRGNLSGKRVDYSSR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVET-DD 359
           TVISPDPNLR+DQV +P+ VA+ LTYPE+V K N + +   ++ G DT+PGANFVE+   
Sbjct: 367 TVISPDPNLRIDQVAVPVHVAKILTYPEKVNKANIQLMRRLIVNGCDTHPGANFVESRAT 426

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           G KRFL+YGNR+K+A++L  G +VERHL+D DVVLFNRQPSLH++SIM+H AKV+PHRTF
Sbjct: 427 GVKRFLKYGNRQKIAQELKYGDIVERHLMDKDVVLFNRQPSLHKLSIMAHYAKVMPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[6][TOP]
>UniRef100_O94666 DNA-directed RNA polymerase III subunit rpc1 n=1
           Tax=Schizosaccharomyces pombe RepID=RPC1_SCHPO
          Length = 1405

 Score =  248 bits (632), Expect = 3e-64
 Identities = 117/187 (62%), Positives = 145/187 (77%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ WE++Q+  A ++NS+   L P    +KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 301 MEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGR 360

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV-ETDD 359
           TVISPDPNLR+DQV +P R+A+ LT+PERVT  N+K L   +  GPD +PGAN+V + + 
Sbjct: 361 TVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRES 420

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           G KRFLR+GNR ++A DL +G +VERHL D DVVLFNRQPSLH++SIM+H  KV P RT 
Sbjct: 421 GFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRTL 480

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 481 RFNECVC 487

[7][TOP]
>UniRef100_UPI00015B5AFA PREDICTED: hypothetical protein n=1 Tax=Nasonia vitripennis
           RepID=UPI00015B5AFA
          Length = 1372

 Score =  246 bits (628), Expect = 9e-64
 Identities = 118/186 (63%), Positives = 147/186 (79%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + WE+LQ+  A ++NS+ + +PP     K  RG+ QRLKGK GRFRGNLSGKRVDFS RT
Sbjct: 297 EDWEFLQLHVALYINSEMSGIPPSMQPQKAGRGLVQRLKGKQGRFRGNLSGKRVDFSSRT 356

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVET-DDG 362
           VISPDPNLR++QVG+P+ VA+ LTYPERV K N + +   V  GPD +PGANF+E   + 
Sbjct: 357 VISPDPNLRIEQVGVPIHVAKILTYPERVNKCNIELMRRLVKNGPDVHPGANFIEIGKNK 416

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +RFLRYGNR+K+A+DL  G +VERHL DGDVVLFNRQPSLH++SIM+H AKV+ +RTFR
Sbjct: 417 ERRFLRYGNRQKMAQDLQYGDIVERHLHDGDVVLFNRQPSLHKLSIMAHKAKVLENRTFR 476

Query: 543 FNECVC 560
           FNECVC
Sbjct: 477 FNECVC 482

[8][TOP]
>UniRef100_UPI000151B46E DNA-directed RNA polymerase III largest subunit n=1 Tax=Pichia
           guilliermondii ATCC 6260 RepID=UPI000151B46E
          Length = 1379

 Score =  246 bits (627), Expect = 1e-63
 Identities = 120/193 (62%), Positives = 154/193 (79%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATN---LPPL---ASTAKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSDA N   LP +   A +AKP+RG  QRLKGK GRFRGNLSGKR
Sbjct: 240 MEQWDYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRLKGKQGRFRGNLSGKR 299

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFS RTVISPDPNLR+D+V +P RVA+ LTYPE+ T++NRK+L   ++ GPD +PGAN+
Sbjct: 300 VDFSARTVISPDPNLRIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQLILNGPDVHPGANY 359

Query: 345 V-ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
           V + ++  KR LR+G++ K+AK+L +G VVERH+ DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 360 VMKQNEAAKRNLRFGDKVKLAKNLHVGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI 419

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 420 RPWRTFRLNECVC 432

[9][TOP]
>UniRef100_C5MI79 DNA-directed RNA polymerase (Fragment) n=1 Tax=Candida tropicalis
           MYA-3404 RepID=C5MI79_CANTT
          Length = 1159

 Score =  246 bits (627), Expect = 1e-63
 Identities = 121/193 (62%), Positives = 152/193 (78%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPL------ASTAKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W+++Q+  A ++NSD+ N P L      A  +KP+R   QRLKGK GRFRGNLSGKR
Sbjct: 310 MEQWDYMQLSVAMYINSDSAN-PALSAGGGGAKASKPIRAFCQRLKGKQGRFRGNLSGKR 368

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL++D+V +P RVA+ LTYPE+ T++NRK+L   V  GPDTYPGAN+
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQRLVYNGPDTYPGANY 428

Query: 345 V-ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
           V + ++  KR LR+G+R K+AK+L +G VVERH+ DGDVVLFNRQPSLHR+SI+SH AKV
Sbjct: 429 VAKQNEPGKRNLRFGDRAKLAKNLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKV 488

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 489 RPWRTFRLNECVC 501

[10][TOP]
>UniRef100_A5DM42 DNA-directed RNA polymerase n=1 Tax=Pichia guilliermondii
           RepID=A5DM42_PICGU
          Length = 1379

 Score =  246 bits (627), Expect = 1e-63
 Identities = 120/193 (62%), Positives = 154/193 (79%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATN---LPPL---ASTAKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSDA N   LP +   A +AKP+RG  QRLKGK GRFRGNLSGKR
Sbjct: 240 MEQWDYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRLKGKQGRFRGNLSGKR 299

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFS RTVISPDPNLR+D+V +P RVA+ LTYPE+ T++NRK+L   ++ GPD +PGAN+
Sbjct: 300 VDFSARTVISPDPNLRIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQLILNGPDVHPGANY 359

Query: 345 V-ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
           V + ++  KR LR+G++ K+AK+L +G VVERH+ DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 360 VMKQNEAAKRNLRFGDKVKLAKNLHVGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI 419

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 420 RPWRTFRLNECVC 432

[11][TOP]
>UniRef100_UPI00016E6B7B UPI00016E6B7B related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016E6B7B
          Length = 649

 Score =  245 bits (626), Expect = 1e-63
 Identities = 116/187 (62%), Positives = 149/187 (79%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LTYPERV K N + +   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQNRFT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L LG VVERHL+DGD+VLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QIKRFLKYGNREKIAQELRLGDVVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[12][TOP]
>UniRef100_UPI00016E6B7A UPI00016E6B7A related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016E6B7A
          Length = 1320

 Score =  245 bits (626), Expect = 1e-63
 Identities = 116/187 (62%), Positives = 149/187 (79%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 251 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 310

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LTYPERV K N + +   V  GP+ +PGANF++    
Sbjct: 311 TVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQNRFT 370

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L LG VVERHL+DGD+VLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 371 QIKRFLKYGNREKIAQELRLGDVVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTF 430

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 431 RFNECVC 437

[13][TOP]
>UniRef100_UPI00016E6B79 UPI00016E6B79 related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016E6B79
          Length = 1390

 Score =  245 bits (626), Expect = 1e-63
 Identities = 116/187 (62%), Positives = 149/187 (79%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LTYPERV K N + +   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQNRFT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L LG VVERHL+DGD+VLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QIKRFLKYGNREKIAQELRLGDVVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[14][TOP]
>UniRef100_B6K857 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
           yFS275 RepID=B6K857_SCHJY
          Length = 1406

 Score =  245 bits (626), Expect = 1e-63
 Identities = 119/187 (63%), Positives = 144/187 (77%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ WE+LQ+  A ++NS+   L P    +KP RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 301 MEQWEFLQLSVALYINSELPGLRPPDMPSKPTRGFCQRLKGKQGRFRGNLSGKRVDFSGR 360

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDD 359
           TVISPDPNL++DQV +PLR+A+ LTYPE+VT  N   L   V  GPD +PGAN+ V+ D 
Sbjct: 361 TVISPDPNLQIDQVAVPLRIAKILTYPEKVTDQNIDALRTRVTNGPDVHPGANYVVDRDT 420

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           G KRFLR+GNRK++A++L +G  VERHL D DVVLFNRQPSLH++SIM+H  KV P RT 
Sbjct: 421 GIKRFLRFGNRKRIAEELHVGDTVERHLQDNDVVLFNRQPSLHKLSIMAHLVKVRPWRTL 480

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 481 RFNECVC 487

[15][TOP]
>UniRef100_A7TNS6 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM
           70294 RepID=A7TNS6_VANPO
          Length = 1460

 Score =  245 bits (626), Expect = 1e-63
 Identities = 120/193 (62%), Positives = 155/193 (80%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATN--LPPLAST----AKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N  + P AS+    AKP+RG  QRLKGK GRFRGNLSGKR
Sbjct: 313 MEHWDYLQLSVAMYINSDSVNPSMMPGASSGGAKAKPIRGFCQRLKGKQGRFRGNLSGKR 372

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL +D+V +P RVA+ LTYPE+VT++NR++L A VI GP+ +PGAN+
Sbjct: 373 VDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNREKLQALVINGPNVHPGANY 432

Query: 345 V-ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
           + + ++  +R LRYG+R K+AK L +G +VERHL DGD+VLFNRQPSLHR+SI+SH AK+
Sbjct: 433 ILKANEEARRNLRYGDRLKIAKQLRVGDIVERHLEDGDIVLFNRQPSLHRLSILSHFAKI 492

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 493 RPWRTFRLNECVC 505

[16][TOP]
>UniRef100_UPI000186E437 DNA-directed RNA polymerase III largest subunit, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186E437
          Length = 1364

 Score =  245 bits (625), Expect = 2e-63
 Identities = 117/186 (62%), Positives = 145/186 (77%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A ++NS+ T +P      K  RG+ QRLKGK GRFRGNLSGKRVDFS RT
Sbjct: 309 EDWDFLQLHCALYINSETTGIPLSMQPKKATRGLVQRLKGKQGRFRGNLSGKRVDFSSRT 368

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL++DQVG+P  VA+ LT+PE+V + N   L   V  GPDT+PGANFVE  +GN
Sbjct: 369 VISPDPNLQIDQVGVPEHVAKILTFPEKVNRANIFLLRELVRNGPDTHPGANFVEDRNGN 428

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            KR+LRYGNR K++ +L  G VVERHL+D D+VLFNRQPSLH++SIM+H AKV+ HRTFR
Sbjct: 429 SKRYLRYGNRSKISSELKFGDVVERHLIDDDIVLFNRQPSLHKLSIMAHRAKVLKHRTFR 488

Query: 543 FNECVC 560
           FNECVC
Sbjct: 489 FNECVC 494

[17][TOP]
>UniRef100_B0DK21 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
           RepID=B0DK21_LACBS
          Length = 1397

 Score =  245 bits (625), Expect = 2e-63
 Identities = 118/186 (63%), Positives = 143/186 (76%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ WE+LQ+  A ++NS+   +P      KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 301 MEQWEFLQLSVAMYINSELPGVPSQPGQ-KPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 359

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P RVA+ LTYPERVT HN   L  A+  GPD +PGANFV   D 
Sbjct: 360 TVISPDPNLRIDEVAVPERVAKILTYPERVTTHNINALRQAIRNGPDVHPGANFVARGD- 418

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
           NK+FLR+GNR  +A  L +G VVERH++DGD++LFNRQPSLH++SIM H AK+ P RTFR
Sbjct: 419 NKKFLRFGNRAAIADGLGIGDVVERHIIDGDIILFNRQPSLHKLSIMCHRAKIRPWRTFR 478

Query: 543 FNECVC 560
            NECVC
Sbjct: 479 LNECVC 484

[18][TOP]
>UniRef100_UPI0000DA3EBF PREDICTED: similar to polymerase (RNA) III (DNA directed)
           polypeptide A, 155kDa n=1 Tax=Rattus norvegicus
           RepID=UPI0000DA3EBF
          Length = 1390

 Score =  243 bits (620), Expect = 7e-63
 Identities = 116/187 (62%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GPD +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRHM 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H AKV PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[19][TOP]
>UniRef100_UPI0000DA3DE9 PREDICTED: similar to polymerase (RNA) III (DNA directed)
           polypeptide A, 155kDa n=2 Tax=Rattus norvegicus
           RepID=UPI0000DA3DE9
          Length = 1362

 Score =  243 bits (620), Expect = 7e-63
 Identities = 116/187 (62%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GPD +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRHM 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H AKV PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[20][TOP]
>UniRef100_UPI00017B08B5 UPI00017B08B5 related cluster n=1 Tax=Tetraodon nigroviridis
           RepID=UPI00017B08B5
          Length = 1391

 Score =  243 bits (620), Expect = 7e-63
 Identities = 113/187 (60%), Positives = 148/187 (79%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 309 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 368

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LTYPERV K N + +   V  GP+ +PGANF++    
Sbjct: 369 TVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQNRYN 428

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERH++DGD+VLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 429 QIKRFLKYGNREKIAQELRYGDIVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTF 488

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 489 RFNECVC 495

[21][TOP]
>UniRef100_Q4S3H6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon
           nigroviridis RepID=Q4S3H6_TETNG
          Length = 1319

 Score =  243 bits (620), Expect = 7e-63
 Identities = 113/187 (60%), Positives = 148/187 (79%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 251 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 310

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LTYPERV K N + +   V  GP+ +PGANF++    
Sbjct: 311 TVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPGANFIQNRYN 370

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERH++DGD+VLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 371 QIKRFLKYGNREKIAQELRYGDIVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTF 430

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 431 RFNECVC 437

[22][TOP]
>UniRef100_UPI000194C79C PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
           155kDa n=1 Tax=Taeniopygia guttata RepID=UPI000194C79C
          Length = 1390

 Score =  242 bits (618), Expect = 1e-62
 Identities = 113/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   +   V  GPD +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVCNGPDVHPGANFIQQRHT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGD+VLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[23][TOP]
>UniRef100_A4IHM8 DNA-directed RNA polymerase n=1 Tax=Xenopus (Silurana) tropicalis
           RepID=A4IHM8_XENTR
          Length = 1390

 Score =  242 bits (617), Expect = 2e-62
 Identities = 112/187 (59%), Positives = 148/187 (79%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 306 MEDWDFLQLQCALYINSELSGIPMNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 365

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V + N + +   V  GPD +PGANF++    
Sbjct: 366 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRHT 425

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGD+VLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 426 QMKRFLKYGNREKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTF 485

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 486 RFNECVC 492

[24][TOP]
>UniRef100_Q7TSI4 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=Q7TSI4_MOUSE
          Length = 649

 Score =  242 bits (617), Expect = 2e-62
 Identities = 115/187 (61%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GPD +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRHM 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[25][TOP]
>UniRef100_B2RXC6 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=B2RXC6_MOUSE
          Length = 1390

 Score =  242 bits (617), Expect = 2e-62
 Identities = 115/187 (61%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GPD +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRHM 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[26][TOP]
>UniRef100_UPI00004BFD05 PREDICTED: similar to polymerase (RNA) III (DNA directed)
           polypeptide A, 155kDa n=1 Tax=Canis lupus familiaris
           RepID=UPI00004BFD05
          Length = 1390

 Score =  241 bits (616), Expect = 2e-62
 Identities = 115/187 (61%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H AKV PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[27][TOP]
>UniRef100_UPI0000EB3E23 DNA-directed RNA polymerase III subunit RPC1 (EC 2.7.7.6) (RNA
           polymerase III subunit C1) (DNA-directed RNA polymerase
           III subunit A) (DNA-directed RNA polymerase III largest
           subunit) (RPC155) (C160). n=1 Tax=Canis lupus familiaris
           RepID=UPI0000EB3E23
          Length = 1393

 Score =  241 bits (616), Expect = 2e-62
 Identities = 115/187 (61%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H AKV PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[28][TOP]
>UniRef100_UPI00003AE23E polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1
           Tax=Gallus gallus RepID=UPI00003AE23E
          Length = 1390

 Score =  241 bits (616), Expect = 2e-62
 Identities = 113/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   +   V  GPD +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRHT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGD+VLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[29][TOP]
>UniRef100_A8PJK8 DNA-directed RNA polymerase n=1 Tax=Brugia malayi
           RepID=A8PJK8_BRUMA
          Length = 1404

 Score =  241 bits (616), Expect = 2e-62
 Identities = 117/184 (63%), Positives = 142/184 (77%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+ LQV+ A ++NS+ + LPP     +  RG +QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 307 WDHLQVQCALYINSELSGLPPDMQPKRTTRGFTQRLKGKQGRFRGNLSGKRVDFSGRTVI 366

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGAN-FVETDDGNK 368
           SPDPNLR+DQVG+P+ VA+ LT+PE V K N +R+   ++ G D +PGAN  VE   GNK
Sbjct: 367 SPDPNLRIDQVGVPVYVAKILTFPEIVNKANIERMRKLILNGDDIHPGANHIVERATGNK 426

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RFL+YGNR+  A  L +G ++ERHL D DVVLFNRQPSLH+ISIMSH AK+VP RTFRFN
Sbjct: 427 RFLKYGNREITAAQLKVGDIIERHLDDNDVVLFNRQPSLHKISIMSHRAKIVPGRTFRFN 486

Query: 549 ECVC 560
           EC C
Sbjct: 487 ECAC 490

[30][TOP]
>UniRef100_Q5A164 DNA-directed RNA polymerase n=1 Tax=Candida albicans
           RepID=Q5A164_CANAL
          Length = 1448

 Score =  241 bits (616), Expect = 2e-62
 Identities = 118/193 (61%), Positives = 152/193 (78%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPL------ASTAKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N P L      A ++KP+R   QRLKGK GRFRGNLSGKR
Sbjct: 310 MEQWDYLQLSVAMYINSDSAN-PALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKR 368

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL++D+V +P RVA+ LTYPE+ T++N+K+L   V+ GPD +PGAN+
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANY 428

Query: 345 V-ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
           V + ++  KR LR+G+R K+AK L +G VVERH+ DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 429 VMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI 488

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 489 RPWRTFRLNECVC 501

[31][TOP]
>UniRef100_Q5A0Z3 DNA-directed RNA polymerase n=1 Tax=Candida albicans
           RepID=Q5A0Z3_CANAL
          Length = 1448

 Score =  241 bits (616), Expect = 2e-62
 Identities = 118/193 (61%), Positives = 152/193 (78%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPL------ASTAKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N P L      A ++KP+R   QRLKGK GRFRGNLSGKR
Sbjct: 310 MEQWDYLQLSVAMYINSDSAN-PALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKR 368

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL++D+V +P RVA+ LTYPE+ T++N+K+L   V+ GPD +PGAN+
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANY 428

Query: 345 V-ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
           V + ++  KR LR+G+R K+AK L +G VVERH+ DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 429 VMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI 488

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 489 RPWRTFRLNECVC 501

[32][TOP]
>UniRef100_C4YGE6 DNA-directed RNA polymerase n=1 Tax=Candida albicans
           RepID=C4YGE6_CANAL
          Length = 1448

 Score =  241 bits (616), Expect = 2e-62
 Identities = 118/193 (61%), Positives = 152/193 (78%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPL------ASTAKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N P L      A ++KP+R   QRLKGK GRFRGNLSGKR
Sbjct: 310 MEQWDYLQLSVAMYINSDSAN-PALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKR 368

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL++D+V +P RVA+ LTYPE+ T++N+K+L   V+ GPD +PGAN+
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPGANY 428

Query: 345 V-ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
           V + ++  KR LR+G+R K+AK L +G VVERH+ DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 429 VMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI 488

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 489 RPWRTFRLNECVC 501

[33][TOP]
>UniRef100_A3GEY3 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
           RepID=A3GEY3_PICST
          Length = 1448

 Score =  241 bits (616), Expect = 2e-62
 Identities = 118/194 (60%), Positives = 152/194 (78%), Gaps = 8/194 (4%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLAST-------AKPLRGISQRLKGKTGRFRGNLSGK 161
           M+ W++LQ+  A ++NSD+ N   L S+       +KP+RG  QRLKGK GRFRGNLSGK
Sbjct: 310 MEQWDYLQLSVAMYINSDSANPALLPSSGGGGSKSSKPIRGFCQRLKGKQGRFRGNLSGK 369

Query: 162 RVDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGAN 341
           RVDFSGRTVISPDPNL++D+V +P  VA+ LTYPER T++NRK+L   V+ GPD +PGAN
Sbjct: 370 RVDFSGRTVISPDPNLKIDEVAVPELVAKVLTYPERCTRYNRKKLQRLVVNGPDIHPGAN 429

Query: 342 FV-ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
           +V + ++  KR LR+G+R K+AK+L +G +VERH+ DGDVVLFNRQPSLHR+SI+SH AK
Sbjct: 430 YVMKQNEQAKRNLRFGDRVKLAKNLQIGDLVERHIEDGDVVLFNRQPSLHRLSILSHYAK 489

Query: 519 VVPHRTFRFNECVC 560
           + P RTFR NECVC
Sbjct: 490 IRPWRTFRLNECVC 503

[34][TOP]
>UniRef100_Q5ZL98 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Gallus gallus
           RepID=RPC1_CHICK
          Length = 1390

 Score =  241 bits (616), Expect = 2e-62
 Identities = 113/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   +   V  GPD +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPGANFIQQRHT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGD+VLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[35][TOP]
>UniRef100_UPI00015A5DDB PREDICTED: im:7139382 n=1 Tax=Danio rerio RepID=UPI00015A5DDB
          Length = 1390

 Score =  241 bits (615), Expect = 3e-62
 Identities = 113/187 (60%), Positives = 148/187 (79%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LTYPE+V K N + +   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQRHM 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G VVERH++DGD+VLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[36][TOP]
>UniRef100_UPI0000E22532 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
           155kDa n=1 Tax=Pan troglodytes RepID=UPI0000E22532
          Length = 1349

 Score =  241 bits (615), Expect = 3e-62
 Identities = 114/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 266 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 325

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GP+ +PGANF++    
Sbjct: 326 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHT 385

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 386 QMKRFLKYGNREKIAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTF 445

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 446 RFNECVC 452

[37][TOP]
>UniRef100_UPI000155D900 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
           155kDa n=1 Tax=Equus caballus RepID=UPI000155D900
          Length = 1390

 Score =  241 bits (614), Expect = 4e-62
 Identities = 114/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[38][TOP]
>UniRef100_B9WF61 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
           RepID=B9WF61_CANDC
          Length = 1448

 Score =  241 bits (614), Expect = 4e-62
 Identities = 116/193 (60%), Positives = 152/193 (78%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPL------ASTAKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N P L      A ++KP+R   QRLKGK GRFRGNLSGKR
Sbjct: 310 MEQWDYLQLSVAMYINSDSAN-PALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKR 368

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL++D+V +P RVA+ LTYPE+ T++N+K+L   ++ GPD +PGAN+
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLIVNGPDIHPGANY 428

Query: 345 V-ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
           V + ++  KR LR+G+R K+AK L +G +VERH+ DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 429 VMKQNEPGKRNLRFGDRVKLAKTLQIGDIVERHIEDGDVVLFNRQPSLHRLSILSHYAKI 488

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 489 RPWRTFRLNECVC 501

[39][TOP]
>UniRef100_A8PGH2 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8PGH2_COPC7
          Length = 1403

 Score =  241 bits (614), Expect = 4e-62
 Identities = 114/186 (61%), Positives = 145/186 (77%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ WE+LQ+  A ++NS+   +P      KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 301 MEQWEFLQLSVAMYINSELPGVPSQMGQ-KPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 359

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P RVA+ LTYPERVT HN + L  A+  GPD +PGAN+V   + 
Sbjct: 360 TVISPDPNLRIDEVAVPERVAKILTYPERVTMHNIETLRQAIRNGPDVHPGANYVARGE- 418

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K+FL++GNR+ +A +L +G +VERH++DGD+VLFNRQPSLH++SIM H AK+ P RTFR
Sbjct: 419 TKKFLKFGNRQAIADNLAIGDIVERHVIDGDIVLFNRQPSLHKLSIMCHRAKIRPWRTFR 478

Query: 543 FNECVC 560
            NECVC
Sbjct: 479 LNECVC 484

[40][TOP]
>UniRef100_A4IF62 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Bos taurus
           RepID=RPC1_BOVIN
          Length = 1390

 Score =  241 bits (614), Expect = 4e-62
 Identities = 114/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[41][TOP]
>UniRef100_UPI00017EFF90 PREDICTED: similar to polymerase (RNA) III (DNA directed)
           polypeptide A, 155kDa n=1 Tax=Sus scrofa
           RepID=UPI00017EFF90
          Length = 1390

 Score =  240 bits (613), Expect = 5e-62
 Identities = 114/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPGANFIQQRHT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[42][TOP]
>UniRef100_B7Z6H4 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B7Z6H4_HUMAN
          Length = 1369

 Score =  240 bits (613), Expect = 5e-62
 Identities = 114/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[43][TOP]
>UniRef100_C5DY31 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS
           732 RepID=C5DY31_ZYGRC
          Length = 1458

 Score =  240 bits (613), Expect = 5e-62
 Identities = 118/191 (61%), Positives = 150/191 (78%), Gaps = 5/191 (2%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLAS----TAKPLRGISQRLKGKTGRFRGNLSGKRVD 170
           M+ W++LQ+  A ++NSD+ N   L+       KP+RG  QRLKGK GRFRGNLSGKRVD
Sbjct: 313 MEHWDYLQLAVAMYINSDSVNPAILSGGTGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVD 372

Query: 171 FSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-V 347
           FSGRTVISPDPNL VD+V +P RVA+ LTYPERVT++N+ +L   V+ GP+ YPGAN+ +
Sbjct: 373 FSGRTVISPDPNLSVDEVAVPDRVAKVLTYPERVTRYNKGKLQQLVVNGPNEYPGANYLL 432

Query: 348 ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVP 527
           + D+  +R LR+G+R K+AK+L +G +VERHL DGDVVLFNRQPSLHR+SI+SH AK+ P
Sbjct: 433 KKDEDARRNLRFGDRVKLAKNLRIGDLVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRP 492

Query: 528 HRTFRFNECVC 560
            RTFR NECVC
Sbjct: 493 WRTFRLNECVC 503

[44][TOP]
>UniRef100_O14802 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Homo sapiens
           RepID=RPC1_HUMAN
          Length = 1390

 Score =  240 bits (613), Expect = 5e-62
 Identities = 114/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHT 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[45][TOP]
>UniRef100_Q6BI69 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Debaryomyces
           hansenii RepID=RPC1_DEBHA
          Length = 1457

 Score =  240 bits (613), Expect = 5e-62
 Identities = 115/193 (59%), Positives = 153/193 (79%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLAST------AKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N   L S+      +KP+RG  QRLKGK GRFRGNLSGKR
Sbjct: 310 MEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFRGNLSGKR 369

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL++D+V +P RVA+ LTYPE+ T++NRK+L   ++ GP+ +PGAN+
Sbjct: 370 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHPGANY 429

Query: 345 -VETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
            ++ ++  KR LR+G+R K+AK+L +G VVERH+ DGD+VLFNRQPSLHR+SI+SH AK+
Sbjct: 430 LLKQNESAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDIVLFNRQPSLHRLSILSHYAKI 489

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 490 RPWRTFRLNECVC 502

[46][TOP]
>UniRef100_C7GMM0 Rpo31p n=1 Tax=Saccharomyces cerevisiae JAY291 RepID=C7GMM0_YEAS2
          Length = 1460

 Score =  240 bits (612), Expect = 6e-62
 Identities = 116/193 (60%), Positives = 151/193 (78%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTA------KPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N   L  ++      KP+RG  QRLKGK GRFRGNLSGKR
Sbjct: 313 MEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKR 372

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL +D+V +P RVA+ LTYPE+VT++NR +L   ++ GP+ +PGAN+
Sbjct: 373 VDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANY 432

Query: 345 -VETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
            ++ ++  +R LRYG+R K+AK+L +G VVERHL DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 433 LLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKI 492

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 493 RPWRTFRLNECVC 505

[47][TOP]
>UniRef100_B3LJF9 DNA-directed RNA polymerase n=3 Tax=Saccharomyces cerevisiae
           RepID=B3LJF9_YEAS1
          Length = 1460

 Score =  240 bits (612), Expect = 6e-62
 Identities = 116/193 (60%), Positives = 151/193 (78%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTA------KPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N   L  ++      KP+RG  QRLKGK GRFRGNLSGKR
Sbjct: 313 MEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKR 372

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL +D+V +P RVA+ LTYPE+VT++NR +L   ++ GP+ +PGAN+
Sbjct: 373 VDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANY 432

Query: 345 -VETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
            ++ ++  +R LRYG+R K+AK+L +G VVERHL DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 433 LLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKI 492

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 493 RPWRTFRLNECVC 505

[48][TOP]
>UniRef100_P04051 DNA-directed RNA polymerase III subunit RPC1 n=2 Tax=Saccharomyces
           cerevisiae RepID=RPC1_YEAST
          Length = 1460

 Score =  240 bits (612), Expect = 6e-62
 Identities = 116/193 (60%), Positives = 151/193 (78%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTA------KPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N   L  ++      KP+RG  QRLKGK GRFRGNLSGKR
Sbjct: 313 MEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKR 372

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL +D+V +P RVA+ LTYPE+VT++NR +L   ++ GP+ +PGAN+
Sbjct: 373 VDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANY 432

Query: 345 -VETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
            ++ ++  +R LRYG+R K+AK+L +G VVERHL DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 433 LLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKI 492

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 493 RPWRTFRLNECVC 505

[49][TOP]
>UniRef100_UPI0000F2AF25 PREDICTED: similar to Proteasome (prosome, macropain) subunit,
           alpha type, 2 n=1 Tax=Monodelphis domestica
           RepID=UPI0000F2AF25
          Length = 1390

 Score =  239 bits (611), Expect = 8e-62
 Identities = 113/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   +   V  GP+ +PGANF++    
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFMRKLVRNGPEVHPGANFIQQRHM 426

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 427 QMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[50][TOP]
>UniRef100_UPI0000612BF9 UPI0000612BF9 related cluster n=1 Tax=Bos taurus
           RepID=UPI0000612BF9
          Length = 1392

 Score =  239 bits (611), Expect = 8e-62
 Identities = 114/189 (60%), Positives = 147/189 (77%), Gaps = 3/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVE---T 353
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   L   V  GP+ +PGANF++   T
Sbjct: 367 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPGANFIQQRHT 426

Query: 354 DDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHR 533
                RFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHR
Sbjct: 427 QMKRLRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHR 486

Query: 534 TFRFNECVC 560
           TFRFNECVC
Sbjct: 487 TFRFNECVC 495

[51][TOP]
>UniRef100_UPI0001554E8D PREDICTED: similar to Polymerase (RNA) III (DNA directed)
           polypeptide A, 155kDa n=1 Tax=Ornithorhynchus anatinus
           RepID=UPI0001554E8D
          Length = 1382

 Score =  239 bits (610), Expect = 1e-61
 Identities = 113/187 (60%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 299 MEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 358

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V K N   +   V  GP+ +PGANF++    
Sbjct: 359 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFMRKLVRNGPEVHPGANFIQQRHM 418

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             KRFL+YGNR+K+A++L  G +VERHL+DGDVVLFNRQPSLH++SIM+H A+V PHRTF
Sbjct: 419 QMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTF 478

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 479 RFNECVC 485

[52][TOP]
>UniRef100_UPI00003BE6A5 hypothetical protein DEHA0G13849g n=1 Tax=Debaryomyces hansenii
           CBS767 RepID=UPI00003BE6A5
          Length = 1457

 Score =  239 bits (609), Expect = 1e-61
 Identities = 115/193 (59%), Positives = 153/193 (79%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLAST------AKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N   L S+      +KP+RG  QRLKGK GRFRGNLSGKR
Sbjct: 310 MEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFRGNLSGKR 369

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL++D+V +P RVA+ LTYPE+ T++NRK+L   ++ GP+ +PGAN+
Sbjct: 370 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHPGANY 429

Query: 345 -VETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
            ++ ++  KR LR+G+R K+AK+L +G VVERH+ DGD+VLFNRQPSLHR+SI+SH AK+
Sbjct: 430 LLKQNELAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDIVLFNRQPSLHRLSILSHYAKI 489

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 490 RPWRTFRLNECVC 502

[53][TOP]
>UniRef100_C5DJG5 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS
           6340 RepID=C5DJG5_LACTC
          Length = 1460

 Score =  239 bits (609), Expect = 1e-61
 Identities = 118/192 (61%), Positives = 151/192 (78%), Gaps = 6/192 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATN--LPPLASTA---KPLRGISQRLKGKTGRFRGNLSGKRV 167
           M+ W++LQ+  A ++NSD+ N  + P  ST    KP+RG  QRLKGK GRFRGNLSGKRV
Sbjct: 313 MEQWDYLQLAVAMYINSDSVNPAMMPGGSTGGKTKPIRGFCQRLKGKQGRFRGNLSGKRV 372

Query: 168 DFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF- 344
           DFSGRTV+SPDPNL +D+V +P RVA+ LTYPE VT++N+++L   VI GP+ +PGAN+ 
Sbjct: 373 DFSGRTVVSPDPNLSIDEVAVPDRVAKVLTYPEMVTRYNKQKLQQLVINGPNEHPGANYL 432

Query: 345 VETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVV 524
           ++ D+  +R LRYG+R K+A++L  G VVERHL DGDVVLFNRQPSLHR+SI+SH AK+ 
Sbjct: 433 LKKDEEARRNLRYGDRMKLARNLQYGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIR 492

Query: 525 PHRTFRFNECVC 560
           P RTFR NECVC
Sbjct: 493 PWRTFRLNECVC 504

[54][TOP]
>UniRef100_C1MN08 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MN08_9CHLO
          Length = 1591

 Score =  238 bits (608), Expect = 2e-61
 Identities = 112/188 (59%), Positives = 144/188 (76%), Gaps = 1/188 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLP-PLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSG 179
           M+ W++LQV+ A + NS+   L        KPLRG  QRLKGK GRFRGNLSGKRVDFSG
Sbjct: 322 MENWDFLQVQIAMYFNSELPGLSLQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFSG 381

Query: 180 RTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDD 359
           RTVISPDPNLR+D+VG+P+ +A+ +TYPE ++KHN + +   V  G + +PGANFV    
Sbjct: 382 RTVISPDPNLRIDEVGVPMHIAKLMTYPEVISKHNIEHIRERVRNGMNKHPGANFVRFKS 441

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           G  ++L+YG+R++VA +L  G VVERHL DGDV+LFNRQPSLH++SIM+H AK++P RT 
Sbjct: 442 GGTQYLKYGDRRRVASELKFGDVVERHLNDGDVLLFNRQPSLHKMSIMAHRAKIMPWRTL 501

Query: 540 RFNECVCA 563
           RFNECVCA
Sbjct: 502 RFNECVCA 509

[55][TOP]
>UniRef100_Q6CMC7 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
           RepID=Q6CMC7_KLULA
          Length = 1457

 Score =  238 bits (607), Expect = 2e-61
 Identities = 118/191 (61%), Positives = 150/191 (78%), Gaps = 5/191 (2%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATN---LPPLAST-AKPLRGISQRLKGKTGRFRGNLSGKRVD 170
           M+ W++LQ+  A ++NSD+ N   LP  + T +KP+RG  QRLKGK GRFRGNLSGKRVD
Sbjct: 313 MEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSGKRVD 372

Query: 171 FSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-V 347
           FSGRTVISPDPNL +D+V +P RVA+ LTYPE+VT++N+ +L   VI GP  +PGAN+ +
Sbjct: 373 FSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGANYLL 432

Query: 348 ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVP 527
           + ++  +R LRYG+R K+AK L  G VVERH+ DGDVVLFNRQPSLHR+SI+SH AK+ P
Sbjct: 433 KKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKIRP 492

Query: 528 HRTFRFNECVC 560
            RTFR NECVC
Sbjct: 493 WRTFRLNECVC 503

[56][TOP]
>UniRef100_A5E7R0 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
           RepID=A5E7R0_LODEL
          Length = 1450

 Score =  238 bits (607), Expect = 2e-61
 Identities = 114/197 (57%), Positives = 154/197 (78%), Gaps = 11/197 (5%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATN---LPPL-------ASTAKPLRGISQRLKGKTGRFRGNL 152
           M+ W++LQ+  A ++NSD+ N   +P +       + ++KP+RG  QRLKGK GRFRGNL
Sbjct: 311 MEQWDYLQLSVAMYINSDSANPALIPSVGGGGGGGSKSSKPIRGFCQRLKGKQGRFRGNL 370

Query: 153 SGKRVDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYP 332
           SGKRVDFSGRTVISPDPNL++D+V +P RVA+ LTYPE+ T++N+++L   +I GPD +P
Sbjct: 371 SGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKRKLQQLIINGPDHHP 430

Query: 333 GANFVE-TDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSH 509
           GAN+V+  ++  KR LR+G+R K+A+ L +G +VERH+ DGDVVLFNRQPSLHR+SI+SH
Sbjct: 431 GANYVQKQNEPGKRNLRFGDRHKLARSLQVGDLVERHIEDGDVVLFNRQPSLHRLSILSH 490

Query: 510 SAKVVPHRTFRFNECVC 560
            AK+ P RTFR NECVC
Sbjct: 491 YAKIRPWRTFRLNECVC 507

[57][TOP]
>UniRef100_Q18566 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis elegans
           RepID=Q18566_CAEEL
          Length = 1400

 Score =  238 bits (606), Expect = 3e-61
 Identities = 114/184 (61%), Positives = 141/184 (76%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           WE LQ++ A ++NS+ + LPP     + +R  +QRLKGK GRFRGNL GKRVDFSGRTVI
Sbjct: 306 WEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVI 365

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDDGNK 368
           SPDPNLR+DQVG+P+ VA TLT+PE V   N +++   VI G D +PGAN+ VE   GNK
Sbjct: 366 SPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNK 425

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           + L+YG R ++AK+L +G  +ERHL D DVVLFNRQPSLH+ISIMSH AKV+P RTFRFN
Sbjct: 426 KLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFN 485

Query: 549 ECVC 560
           EC C
Sbjct: 486 ECAC 489

[58][TOP]
>UniRef100_UPI000022105F Hypothetical protein CBG05787 n=1 Tax=Caenorhabditis briggsae AF16
           RepID=UPI000022105F
          Length = 1402

 Score =  237 bits (604), Expect = 5e-61
 Identities = 113/184 (61%), Positives = 142/184 (77%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           WE LQ++ A ++NS+ + LPP     + +R  +QRLKGK GRFRGNL GKRVDFSGRTVI
Sbjct: 306 WEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVI 365

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDDGNK 368
           SPDPNLR+DQVG+P+ VA TLT+PE V   N  ++   ++ G D +PGAN+ V+   G+K
Sbjct: 366 SPDPNLRIDQVGVPVHVAMTLTFPEIVNASNIDKMRKLIVNGSDVHPGANYLVDKKTGHK 425

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           + L+YGNR+++AK+L LG  VERHL D DVVLFNRQPSLH+ISIMSH AKV+P RTFRFN
Sbjct: 426 KLLKYGNREELAKNLRLGDTVERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFN 485

Query: 549 ECVC 560
           EC C
Sbjct: 486 ECAC 489

[59][TOP]
>UniRef100_UPI0000E48917 PREDICTED: similar to RNA polymerase III largest subunit, partial
           n=1 Tax=Strongylocentrotus purpuratus
           RepID=UPI0000E48917
          Length = 427

 Score =  236 bits (601), Expect = 1e-60
 Identities = 112/187 (59%), Positives = 142/187 (75%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ+  A ++NS+ + LP      KP RG  QRLKGK GRFRGNLSGKRVD+S R
Sbjct: 33  MEDWDFLQLACALYINSETSGLPLNMQPKKPTRGFCQRLKGKQGRFRGNLSGKRVDYSSR 92

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV-ETDD 359
           TVISPDPNLR+D+V +P  VA+ LTYPE+VTK N   +   V+ G D +PGANF+ +   
Sbjct: 93  TVISPDPNLRIDEVAVPELVAKLLTYPEKVTKSNMALMRKLVMNGCDAHPGANFIHQRHT 152

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            NK FL+YGNR+K+A++L  G  VERHL+DGD+VLFNRQPSLH++SIM+H A+V P RTF
Sbjct: 153 QNKMFLKYGNRQKMAQELKYGDTVERHLIDGDIVLFNRQPSLHKLSIMAHKARVKPFRTF 212

Query: 540 RFNECVC 560
           RFN CVC
Sbjct: 213 RFNACVC 219

[60][TOP]
>UniRef100_UPI0000D57400 PREDICTED: similar to AGAP004703-PA n=1 Tax=Tribolium castaneum
           RepID=UPI0000D57400
          Length = 1390

 Score =  236 bits (601), Expect = 1e-60
 Identities = 113/186 (60%), Positives = 145/186 (77%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           +GW++LQ++ A ++NS+ + +P      KP RG+ QRLKGK GRFRGNLSGKRVDFS RT
Sbjct: 318 EGWDFLQLQTALYINSELSGIPLAMMPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRT 377

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV-ETDDG 362
           VISPDPNL++DQVG+PL +A+ LT+PERV   N   +   VI GPD +PGAN+V +    
Sbjct: 378 VISPDPNLQIDQVGVPLHIAKILTFPERVIHANIDVMRQLVINGPDKWPGANYVQQKGSA 437

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K+FL+YGNR+K+A++L LG +VERHL + DVVLFNRQPSLH++SIM+H  KV  HRTFR
Sbjct: 438 FKKFLKYGNREKLAQELKLGDLVERHLHNDDVVLFNRQPSLHKLSIMAHRTKVHQHRTFR 497

Query: 543 FNECVC 560
           FNECVC
Sbjct: 498 FNECVC 503

[61][TOP]
>UniRef100_Q6CB20 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
           RepID=Q6CB20_YARLI
          Length = 1483

 Score =  236 bits (601), Expect = 1e-60
 Identities = 118/187 (63%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ WE LQ+  A ++NSD T   P  S +KP+R ++QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 311 MEQWELLQLAVAVYINSD-TPQGPGQSASKPIRALTQRLKGKQGRFRGNLSGKRVDFSGR 369

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV-ETDD 359
           TVISPDPNLR+DQV +P RVA+ LTYPERVT HN ++L   VI GP  +PGAN++ +  +
Sbjct: 370 TVISPDPNLRIDQVAVPDRVAKILTYPERVTSHNIEKLRNLVITGPSQHPGANYLFKKGE 429

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             +R LR+G+R K+A+ L +G VVERHL DGDVVLFNRQPSLHR+SI++H A++ P RTF
Sbjct: 430 SLRRNLRFGDRAKIAERLEIGDVVERHLEDGDVVLFNRQPSLHRLSILAHFAQIRPWRTF 489

Query: 540 RFNECVC 560
           R NECVC
Sbjct: 490 RLNECVC 496

[62][TOP]
>UniRef100_C4Y380 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC
           42720 RepID=C4Y380_CLAL4
          Length = 1491

 Score =  236 bits (601), Expect = 1e-60
 Identities = 114/195 (58%), Positives = 151/195 (77%), Gaps = 9/195 (4%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPL--------ASTAKPLRGISQRLKGKTGRFRGNLSG 158
           M+ W++LQ+  A ++NSD+ N   L        + ++KP+RG  QRLKGK GRFRGNLSG
Sbjct: 343 MEQWDYLQLSVAMYINSDSANPALLPGGMGGSGSKSSKPIRGFCQRLKGKQGRFRGNLSG 402

Query: 159 KRVDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA 338
           KRVDFSGRTVISPDPNLR+D+V +P RVA+ LTYPE+ T++NR++L   ++ GP  +PGA
Sbjct: 403 KRVDFSGRTVISPDPNLRIDEVAVPDRVAKILTYPEKCTRYNRQKLQKLILNGPTVHPGA 462

Query: 339 NFV-ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSA 515
           N+V + ++  KR L++G+R K+AK L +G +VERH+ DGDVVLFNRQPSLHR+SI+SH A
Sbjct: 463 NYVLKQNEVAKRNLKFGDRVKLAKTLRIGDIVERHIEDGDVVLFNRQPSLHRLSILSHYA 522

Query: 516 KVVPHRTFRFNECVC 560
           K+ P RTFR NECVC
Sbjct: 523 KIRPWRTFRLNECVC 537

[63][TOP]
>UniRef100_C1E5P6 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
           RepID=C1E5P6_9CHLO
          Length = 1479

 Score =  235 bits (599), Expect = 2e-60
 Identities = 110/187 (58%), Positives = 144/187 (77%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSG 179
           M+ W++LQ++ A ++NS+   L        KPLRG  QRLKGK GRFRGNLSGKRVDFSG
Sbjct: 322 MENWDFLQIQCAMYINSELPGLSAQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFSG 381

Query: 180 RTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDD 359
           RTVISPDPNLR+D+VG+P+ +A+ +TYPE V++HN + +   V  G + +PGANFV    
Sbjct: 382 RTVISPDPNLRIDEVGVPMHIAKMMTYPEVVSRHNIEMIRERVRNGMNKHPGANFVRFKS 441

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           G  ++L+YG+R++VA +L  G VVERHL DGDV+LFNRQPSLH++SIM+H A+V+P RT 
Sbjct: 442 GGTQYLKYGDRRRVASELKYGDVVERHLHDGDVLLFNRQPSLHKMSIMAHRARVMPWRTL 501

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 502 RFNECVC 508

[64][TOP]
>UniRef100_B7G2E6 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP
           1055/1 RepID=B7G2E6_PHATR
          Length = 1281

 Score =  234 bits (596), Expect = 4e-60
 Identities = 116/189 (61%), Positives = 149/189 (78%), Gaps = 2/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLP-PLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSG 179
           M+ W++LQV+ A+++N +   L  P+ S  KP+RG+ QRLKGK GRFRGNLSGKRVDFS 
Sbjct: 267 MEEWDFLQVQVAQYINGEMPGLQRPIGS--KPMRGLCQRLKGKQGRFRGNLSGKRVDFSA 324

Query: 180 RTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDD 359
           RTVISPDPNLRVDQVG+P RVA+T+TYPERV+++N ++L   V  GPD +PGAN +   D
Sbjct: 325 RTVISPDPNLRVDQVGVPERVAKTMTYPERVSRYNIEKLRQRVRNGPDVHPGANLIRMKD 384

Query: 360 GN-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
           G+  + L +G+R+ VAK+L  G VVERH+ D DVVLFNRQPSLH++SIM+H AKV+  +T
Sbjct: 385 GSFVKSLSFGDRELVAKNLRYGDVVERHMEDDDVVLFNRQPSLHKVSIMAHRAKVMEWKT 444

Query: 537 FRFNECVCA 563
           FRFN CVCA
Sbjct: 445 FRFNTCVCA 453

[65][TOP]
>UniRef100_UPI00019259E0 PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra
           magnipapillata RepID=UPI00019259E0
          Length = 534

 Score =  233 bits (595), Expect = 6e-60
 Identities = 114/187 (60%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++N + + +P      K  RG  QRL GK GRFRGNLSGKRVDFSGR
Sbjct: 307 MEDWDFLQLQCALYINGEMSGIPMNMQPKKATRGFVQRLNGKQGRFRGNLSGKRVDFSGR 366

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV-ETDD 359
           TVISPDPNLR+DQV +P+ VA+ LT+PE V K N K +   V  G D +PGANFV   + 
Sbjct: 367 TVISPDPNLRIDQVAVPIHVAKVLTFPEPVNKFNIKLMKELVKNGADIHPGANFVISKNT 426

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           G KR+L+YGNR  VA +L  G +VERHL+D DVVLFNRQPSLHR+SIM+H A V PHRTF
Sbjct: 427 GIKRYLKYGNRALVANELRYGDIVERHLMDNDVVLFNRQPSLHRLSIMAHYATVRPHRTF 486

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 487 RFNECVC 493

[66][TOP]
>UniRef100_Q756K2 DNA-directed RNA polymerase n=1 Tax=Eremothecium gossypii
           RepID=Q756K2_ASHGO
          Length = 1459

 Score =  232 bits (592), Expect = 1e-59
 Identities = 114/193 (59%), Positives = 149/193 (77%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPL------ASTAKPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N P L          KP+RG  QRLKGK GRFRGNLSGKR
Sbjct: 313 MEQWDYLQMAVAMYINSDSVN-PALMPGGNGGGKTKPIRGFCQRLKGKQGRFRGNLSGKR 371

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL +D+V +P RVA+ LT+PE+VT++N+ +L   ++ G + +PGAN+
Sbjct: 372 VDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKHKLQQLIVNGANVHPGANY 431

Query: 345 -VETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
            ++ ++  +R LRYG+R K+AK+L +G VVERHL DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 432 LLKKNEEARRNLRYGDRIKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKI 491

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 492 RPWRTFRLNECVC 504

[67][TOP]
>UniRef100_A4RTE2 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus
           CCE9901 RepID=A4RTE2_OSTLU
          Length = 1395

 Score =  232 bits (591), Expect = 2e-59
 Identities = 108/187 (57%), Positives = 141/187 (75%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLP-PLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSG 179
           M+ W++LQ++ A ++NS+   L        KPLRG  QRLKGK GRFRGNLSGKRVDFS 
Sbjct: 320 MENWDFLQIQCAMYINSELPGLSLQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFSA 379

Query: 180 RTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDD 359
           RTVISPDPNLR+D+VG+P+ +A+T+TYPE V KHN   L   V  G   +PGANFV+   
Sbjct: 380 RTVISPDPNLRIDEVGVPIHIAKTMTYPEVVNKHNMVMLRERVRNGMAKHPGANFVKFAS 439

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           G  ++L+YG+R+K+A +L  G +VERHL DGD++LFNRQPSLH++SIM+H A+++  RT 
Sbjct: 440 GGMQYLKYGDRRKIASELKFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKARIMECRTL 499

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 500 RFNECVC 506

[68][TOP]
>UniRef100_Q6FKG9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
           RepID=Q6FKG9_CANGA
          Length = 1459

 Score =  231 bits (590), Expect = 2e-59
 Identities = 116/193 (60%), Positives = 150/193 (77%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATN--LPPLASTA----KPLRGISQRLKGKTGRFRGNLSGKR 164
           M+ W++LQ+  A ++NSD+ N  + P +ST     KP+RG  QRLKGK GRFRGNLSGKR
Sbjct: 313 MEHWDYLQMTVAMYINSDSINPAMLPGSSTGGGKVKPIRGFCQRLKGKQGRFRGNLSGKR 372

Query: 165 VDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF 344
           VDFSGRTVISPDPNL +D+V +P  VA+ LT+PE+VT++N K+L   V  GP+ +PGAN+
Sbjct: 373 VDFSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNIKKLRQLVQNGPNVHPGANY 432

Query: 345 -VETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
            ++ ++  +R LRYG+R+K+A +L  G VVERHL DGDVVLFNRQPSLHR+SI+SH AK+
Sbjct: 433 LLKKNEEARRNLRYGDRQKLANNLQYGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKI 492

Query: 522 VPHRTFRFNECVC 560
            P RTFR NECVC
Sbjct: 493 RPWRTFRLNECVC 505

[69][TOP]
>UniRef100_B4MT76 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
           RepID=B4MT76_DROWI
          Length = 1381

 Score =  230 bits (587), Expect = 5e-59
 Identities = 111/186 (59%), Positives = 141/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K +RGI QRLKGK GRFRGNLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYFHSEISGIPLNMAPKKTMRGIVQRLKGKQGRFRGNLSGKRVDFSGRT 366

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVAR LTYPERV   N + +   V  GP  +PGAN+V+    +
Sbjct: 367 VISPDPNLMINQVGVPVRVARILTYPERVNPANIRHMKQLVRNGPSLHPGANYVQQRGSS 426

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G +VERHL D D+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 427 FKKYLAYGNREKVAQELKCGDIVERHLRDDDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 486

Query: 543 FNECVC 560
           FNEC C
Sbjct: 487 FNECTC 492

[70][TOP]
>UniRef100_B0WFY1 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
           RepID=B0WFY1_CULQU
          Length = 1303

 Score =  229 bits (585), Expect = 8e-59
 Identities = 112/186 (60%), Positives = 137/186 (73%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + NS+ + +P      KP RGI QRLKGK GRFRGNLSGKRVDFS RT
Sbjct: 310 EDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVDFSART 369

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV-ETDDG 362
           VISPDPNL + QVG+P RVA+ LT+PERV   N  R+   +  G + +PGAN+V +    
Sbjct: 370 VISPDPNLMIHQVGVPDRVAKILTFPERVNTANINRMRQLIKNGTEKHPGANYVQQKGSA 429

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR KVA+DL  G +VERHL+DGDVVLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 430 FKKYLAYGNRDKVAQDLKCGDIVERHLMDGDVVLFNRQPSLHKLSIMCHVAKVQPQRTFR 489

Query: 543 FNECVC 560
           FNEC C
Sbjct: 490 FNECAC 495

[71][TOP]
>UniRef100_Q7PMU6 DNA-directed RNA polymerase n=1 Tax=Anopheles gambiae
           RepID=Q7PMU6_ANOGA
          Length = 1379

 Score =  229 bits (584), Expect = 1e-58
 Identities = 111/186 (59%), Positives = 137/186 (73%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + NS+ + +P      KP RGI QRLKGK GRFRGNLSGKRVDFS RT
Sbjct: 311 EDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVDFSART 370

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV-ETDDG 362
           VISPDPNL + QVG+P RVA+ LT+PE+V   N  R+   +  G + +PGAN+V +    
Sbjct: 371 VISPDPNLMIHQVGVPDRVAKILTFPEKVNSANITRMRQLIRNGTEKHPGANYVQQKGSA 430

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR KVA+DL  G +VERHL+DGDVVLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 431 FKKYLAYGNRDKVAQDLKCGDIVERHLIDGDVVLFNRQPSLHKLSIMCHVAKVQPQRTFR 490

Query: 543 FNECVC 560
           FNEC C
Sbjct: 491 FNECAC 496

[72][TOP]
>UniRef100_A8Q6K6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
           RepID=A8Q6K6_MALGO
          Length = 1376

 Score =  229 bits (584), Expect = 1e-58
 Identities = 113/189 (59%), Positives = 145/189 (76%), Gaps = 2/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           ++ W++LQ+  A ++NS+   +PP+ S  KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 284 VEQWDFLQLSVALYINSEMPGVPPM-SGHKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGR 342

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDD 359
           TVISPDPNL +D++ +P RVA+ LTYPERV  HN + +  AV  G DT+PGAN+ V   D
Sbjct: 343 TVISPDPNLAIDEIAVPERVAKILTYPERVFAHNIEAMRQAVRNGTDTHPGANYHVNGRD 402

Query: 360 GNKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
           G KRFL++ G R  +A +L +G +VERH+ DGD+VLFNRQPSLH++SIM H AK+ P RT
Sbjct: 403 GFKRFLKFPGMRDDIAANLRVGDIVERHIRDGDIVLFNRQPSLHKLSIMCHRAKIRPWRT 462

Query: 537 FRFNECVCA 563
           FR NECVC+
Sbjct: 463 FRLNECVCS 471

[73][TOP]
>UniRef100_UPI00019836CE PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
           RepID=UPI00019836CE
          Length = 1383

 Score =  229 bits (583), Expect = 1e-58
 Identities = 105/184 (57%), Positives = 138/184 (75%)
 Frame = +3

Query: 9   GWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTV 188
           GW++LQ+E A+++NSD   +P     A+PL G  QRLKGK GRFRGNLSGKRV+++GRTV
Sbjct: 308 GWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 367

Query: 189 ISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNK 368
           ISPDPNL++ +V IP+ +A+ L+YPERV+ HN ++L   ++ GP  YPGA  +   DG+ 
Sbjct: 368 ISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDGSM 427

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           R L +  RK+ A +L  G +VERHL DGDVVLFNRQPSLHR+SIM H A+++P RT RFN
Sbjct: 428 RSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 487

Query: 549 ECVC 560
           E VC
Sbjct: 488 ESVC 491

[74][TOP]
>UniRef100_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
           CCMP1335 RepID=B8C4M1_THAPS
          Length = 1422

 Score =  229 bits (583), Expect = 1e-58
 Identities = 111/189 (58%), Positives = 142/189 (75%), Gaps = 2/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+GW+ LQ + A+++N D   L       KP+RG+ QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 330 MEGWDVLQSQVAQYINGDMPGLKKEMGH-KPIRGLCQRLKGKQGRFRGNLSGKRVDFSAR 388

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLRVDQVG+P+ VA+ +TYPE V+++N ++L   V+ GPD +PGAN +     
Sbjct: 389 TVISPDPNLRVDQVGVPVHVAKIMTYPETVSRYNIEKLRQRVLNGPDVHPGANLIRPGGE 448

Query: 363 NK--RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
           N   + L Y +R++ A+ L +G +VERH+ DGDVVLFNRQPSLH++SIMSH  KV+P RT
Sbjct: 449 NSFVKSLAYADRERAAQTLRIGDIVERHMEDGDVVLFNRQPSLHKLSIMSHQVKVMPWRT 508

Query: 537 FRFNECVCA 563
           FRFN CVCA
Sbjct: 509 FRFNICVCA 517

[75][TOP]
>UniRef100_A7NZA4 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7NZA4_VITVI
          Length = 1370

 Score =  229 bits (583), Expect = 1e-58
 Identities = 105/184 (57%), Positives = 138/184 (75%)
 Frame = +3

Query: 9   GWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTV 188
           GW++LQ+E A+++NSD   +P     A+PL G  QRLKGK GRFRGNLSGKRV+++GRTV
Sbjct: 308 GWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTV 367

Query: 189 ISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNK 368
           ISPDPNL++ +V IP+ +A+ L+YPERV+ HN ++L   ++ GP  YPGA  +   DG+ 
Sbjct: 368 ISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDGSM 427

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           R L +  RK+ A +L  G +VERHL DGDVVLFNRQPSLHR+SIM H A+++P RT RFN
Sbjct: 428 RSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 487

Query: 549 ECVC 560
           E VC
Sbjct: 488 ESVC 491

[76][TOP]
>UniRef100_UPI00017927B1 PREDICTED: similar to AGAP004703-PA n=1 Tax=Acyrthosiphon pisum
           RepID=UPI00017927B1
          Length = 1355

 Score =  228 bits (582), Expect = 2e-58
 Identities = 108/186 (58%), Positives = 140/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + WE+LQ+  A ++NSD + +       K  RG  QRLKGK GRFRGNLSGKRVDF+ R+
Sbjct: 309 EDWEYLQLHCALYINSDLSGVSRTMMPKKIARGCVQRLKGKHGRFRGNLSGKRVDFTARS 368

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNLR+++VG+P+R+A+ LTYP++V   N + +   V+ GP+ +PGANFVE     
Sbjct: 369 VISPDPNLRIEEVGVPVRMAKILTYPQKVCPANIELMRKLVMNGPEIHPGANFVELQGSK 428

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++LR+GNR  +AKDL +G +VERHL DGD+VLFNRQPSLHR+SIM H AKV+ H T R
Sbjct: 429 LKKYLRFGNRPAIAKDLKIGDIVERHLSDGDIVLFNRQPSLHRLSIMCHRAKVLEHNTLR 488

Query: 543 FNECVC 560
           FNECVC
Sbjct: 489 FNECVC 494

[77][TOP]
>UniRef100_Q16SE0 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
           RepID=Q16SE0_AEDAE
          Length = 1298

 Score =  228 bits (582), Expect = 2e-58
 Identities = 111/186 (59%), Positives = 137/186 (73%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + NS+ + +P      KP RGI QRLKGK GRFRGNLSGKRVDFS RT
Sbjct: 310 EDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVDFSART 369

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV-ETDDG 362
           VISPDPNL + QVG+P RVA+ LT+PERV   N  ++   +  G + +PGAN+V +    
Sbjct: 370 VISPDPNLMIHQVGVPDRVAKILTFPERVNTANINKMRQLIKNGTEKHPGANYVQQKGSA 429

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR KVA+DL  G +VERHL+DGDVVLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 430 FKKYLAYGNRDKVAQDLKCGDIVERHLMDGDVVLFNRQPSLHKLSIMCHVAKVQPQRTFR 489

Query: 543 FNECVC 560
           FNEC C
Sbjct: 490 FNECAC 495

[78][TOP]
>UniRef100_Q16PD2 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
           RepID=Q16PD2_AEDAE
          Length = 1298

 Score =  228 bits (582), Expect = 2e-58
 Identities = 111/186 (59%), Positives = 137/186 (73%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + NS+ + +P      KP RGI QRLKGK GRFRGNLSGKRVDFS RT
Sbjct: 310 EDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVDFSART 369

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV-ETDDG 362
           VISPDPNL + QVG+P RVA+ LT+PERV   N  ++   +  G + +PGAN+V +    
Sbjct: 370 VISPDPNLMIHQVGVPDRVAKILTFPERVNTANINKMRQLIKNGTEKHPGANYVQQKGSA 429

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR KVA+DL  G +VERHL+DGDVVLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 430 FKKYLAYGNRDKVAQDLKCGDIVERHLMDGDVVLFNRQPSLHKLSIMCHVAKVQPQRTFR 489

Query: 543 FNECVC 560
           FNEC C
Sbjct: 490 FNECAC 495

[79][TOP]
>UniRef100_B4MAW8 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
           RepID=B4MAW8_DROVI
          Length = 1044

 Score =  228 bits (582), Expect = 2e-58
 Identities = 110/186 (59%), Positives = 141/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFRGNLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDFSGRT 366

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N +++   V  GP  +PGAN+V+    +
Sbjct: 367 VISPDPNLMINQVGVPVRVAKILTYPERVNPANIRQMKQLVRNGPSMHPGANYVQQRGSS 426

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G +VERHL D D+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 427 FKKYLAYGNREKVAQELKCGDIVERHLRDDDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 486

Query: 543 FNECVC 560
           FNEC C
Sbjct: 487 FNECAC 492

[80][TOP]
>UniRef100_Q01DV6 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
           RepID=Q01DV6_OSTTA
          Length = 1406

 Score =  228 bits (581), Expect = 2e-58
 Identities = 108/187 (57%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLP-PLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSG 179
           M+ W++LQ++ A ++NS+   L        KPLRG  QRLKGK GRFRGNLSGKRVDFS 
Sbjct: 321 MENWDFLQIQCAMYINSELPGLSLQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFSA 380

Query: 180 RTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDD 359
           RTVISPDPNL +D+VGIP+ +A+T+TYPE V +HN   L   V  G   +PGANFV+   
Sbjct: 381 RTVISPDPNLGIDEVGIPIYIAKTMTYPEVVNRHNIAMLRERVRNGMAEHPGANFVKFAS 440

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           G  ++L+YG+R+K+A +L  G +VERHL DGD++LFNRQPSLH++SIM+H A+V+P RT 
Sbjct: 441 GGMQYLKYGDRRKIASELRFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKARVMPCRTL 500

Query: 540 RFNECVC 560
           R NECVC
Sbjct: 501 RLNECVC 507

[81][TOP]
>UniRef100_C5YBD9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
           RepID=C5YBD9_SORBI
          Length = 1391

 Score =  228 bits (581), Expect = 2e-58
 Identities = 110/185 (59%), Positives = 140/185 (75%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           D W++LQ++   ++NSDA  LP         RG+ QRLKGKTGRFRGNLSGKR +++GRT
Sbjct: 302 DCWQYLQLQVVEYVNSDAPCLPDSQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRT 356

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL++ +V IP+ +AR LTYPERV+ +N ++L   +  GP  YPGANFV   DG 
Sbjct: 357 VISPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPDGM 416

Query: 366 KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           K+ L+YG+R+  A+DL  G +VERHL DGDVVLFNRQPSLHR+SIMSH A+++P RT RF
Sbjct: 417 KQSLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRF 476

Query: 546 NECVC 560
           NE VC
Sbjct: 477 NESVC 481

[82][TOP]
>UniRef100_B4PX62 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
           RepID=B4PX62_DROYA
          Length = 1383

 Score =  228 bits (581), Expect = 2e-58
 Identities = 110/186 (59%), Positives = 140/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFR NLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRT 366

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N + +   V  GP  +PGAN+V+    +
Sbjct: 367 VISPDPNLMINQVGVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPGANYVQQRGSS 426

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G +VERHL DGD+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 427 FKKYLAYGNREKVAQELKCGDIVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 486

Query: 543 FNECVC 560
           FNEC C
Sbjct: 487 FNECAC 492

[83][TOP]
>UniRef100_B3NXK5 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
           RepID=B3NXK5_DROER
          Length = 1383

 Score =  228 bits (581), Expect = 2e-58
 Identities = 110/186 (59%), Positives = 140/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFR NLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRT 366

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N + +   V  GP  +PGAN+V+    +
Sbjct: 367 VISPDPNLMINQVGVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPGANYVQQRGSS 426

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G +VERHL DGD+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 427 FKKYLAYGNREKVAQELKCGDIVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 486

Query: 543 FNECVC 560
           FNEC C
Sbjct: 487 FNECAC 492

[84][TOP]
>UniRef100_B3MLS5 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
           RepID=B3MLS5_DROAN
          Length = 1301

 Score =  228 bits (581), Expect = 2e-58
 Identities = 110/186 (59%), Positives = 141/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFR NLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRT 366

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV + N + +   V  GP T+PGAN+V+    +
Sbjct: 367 VISPDPNLMINQVGVPVRVAKILTYPERVNQANMRHMRQLVRNGPSTHPGANYVQQRGSS 426

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G +VERHL D D+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 427 FKKYLAYGNREKVAQELRCGDIVERHLRDDDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 486

Query: 543 FNECVC 560
           FNEC C
Sbjct: 487 FNECAC 492

[85][TOP]
>UniRef100_B4L5G1 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
           RepID=B4L5G1_DROMO
          Length = 1382

 Score =  228 bits (580), Expect = 3e-58
 Identities = 110/186 (59%), Positives = 141/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFRGNLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDFSGRT 366

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N +++   V  GP  +PGAN+V+    +
Sbjct: 367 VISPDPNLMINQVGVPVRVAKILTYPERVNPANIRQMKQLVRNGPAMHPGANYVQQRGSS 426

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G +VERHL D D+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 427 FKKYLAYGNREKVAQELKCGDIVERHLRDDDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 486

Query: 543 FNECVC 560
           FNEC C
Sbjct: 487 FNECAC 492

[86][TOP]
>UniRef100_A9UN86 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
           melanogaster RepID=A9UN86_DROME
          Length = 1410

 Score =  228 bits (580), Expect = 3e-58
 Identities = 111/186 (59%), Positives = 140/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFR NLSGKRVDFSGRT
Sbjct: 334 EDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRT 393

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N + +   V  GP  +PGAN+V+    +
Sbjct: 394 VISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSS 453

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G VVERHL DGD+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 454 FKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 513

Query: 543 FNECVC 560
           FNEC C
Sbjct: 514 FNECAC 519

[87][TOP]
>UniRef100_A8JUY3 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
           RepID=A8JUY3_DROME
          Length = 1376

 Score =  228 bits (580), Expect = 3e-58
 Identities = 111/186 (59%), Positives = 140/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFR NLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRT 366

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N + +   V  GP  +PGAN+V+    +
Sbjct: 367 VISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSS 426

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G VVERHL DGD+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 427 FKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 486

Query: 543 FNECVC 560
           FNEC C
Sbjct: 487 FNECAC 492

[88][TOP]
>UniRef100_B4JN80 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
           RepID=B4JN80_DROGR
          Length = 1303

 Score =  227 bits (579), Expect = 4e-58
 Identities = 110/186 (59%), Positives = 140/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFRGNLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDFSGRT 366

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N + +   V  GP  +PGAN+V+    +
Sbjct: 367 VISPDPNLMINQVGVPVRVAKILTYPERVNPANIRIMKQLVRNGPSVHPGANYVQQRGSS 426

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G +VERHL D D+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 427 FKKYLAYGNREKVAQELKCGDIVERHLRDDDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 486

Query: 543 FNECVC 560
           FNEC C
Sbjct: 487 FNECAC 492

[89][TOP]
>UniRef100_B4HCC5 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
           RepID=B4HCC5_DROPE
          Length = 968

 Score =  227 bits (578), Expect = 5e-58
 Identities = 110/186 (59%), Positives = 140/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFR NLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRT 366

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N + +   V  GP T+PGAN+V+    +
Sbjct: 367 VISPDPNLMINQVGVPVRVAKILTYPERVNLANIRHMKHLVRNGPGTHPGANYVQQRGSS 426

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G +VERHL D D+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 427 FKKYLAYGNREKVAQELKCGDIVERHLCDNDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 486

Query: 543 FNECVC 560
           FNEC C
Sbjct: 487 FNECAC 492

[90][TOP]
>UniRef100_B4H9Z6 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
           RepID=B4H9Z6_DROPE
          Length = 424

 Score =  227 bits (578), Expect = 5e-58
 Identities = 110/186 (59%), Positives = 140/186 (75%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFR NLSGKRVDFSGRT
Sbjct: 87  EDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRT 146

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N + +   V  GP T+PGAN+V+    +
Sbjct: 147 VISPDPNLMINQVGVPVRVAKILTYPERVNLANIRHMKHLVRNGPGTHPGANYVQQRGSS 206

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G +VERHL D D+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 207 FKKYLAYGNREKVAQELKCGDIVERHLCDNDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 266

Query: 543 FNECVC 560
           FNEC C
Sbjct: 267 FNECAC 272

[91][TOP]
>UniRef100_B9PZ91 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii GT1
           RepID=B9PZ91_TOXGO
          Length = 1747

 Score =  226 bits (577), Expect = 7e-58
 Identities = 115/187 (61%), Positives = 146/187 (78%), Gaps = 3/187 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLAST---AKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           WE+LQ++  R +N+DA  +  L ++   +KP RGI QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 382 WEFLQLQCTRLINADAPAVSQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGR 441

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN  V +V +P  VA+ LT+PERV + N + L AAV++G   +PGA +V   DG
Sbjct: 442 TVISPDPNANVYEVVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPGACYVNKVDG 501

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
           +K  LRY NR++VA++L +G VVERHL +GDVVLFNRQPSLHR+SIM+H A+V+P RTFR
Sbjct: 502 SKCSLRYANRRQVAENLQIGDVVERHLCNGDVVLFNRQPSLHRMSIMAHRARVMPWRTFR 561

Query: 543 FNECVCA 563
           FNECVC+
Sbjct: 562 FNECVCS 568

[92][TOP]
>UniRef100_B6KRB8 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
           RepID=B6KRB8_TOXGO
          Length = 1746

 Score =  226 bits (577), Expect = 7e-58
 Identities = 115/187 (61%), Positives = 146/187 (78%), Gaps = 3/187 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLAST---AKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           WE+LQ++  R +N+DA  +  L ++   +KP RGI QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 381 WEFLQLQCTRLINADAPAVSQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGR 440

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN  V +V +P  VA+ LT+PERV + N + L AAV++G   +PGA +V   DG
Sbjct: 441 TVISPDPNANVYEVVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPGACYVNKVDG 500

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
           +K  LRY NR++VA++L +G VVERHL +GDVVLFNRQPSLHR+SIM+H A+V+P RTFR
Sbjct: 501 SKCSLRYANRRQVAENLQIGDVVERHLCNGDVVLFNRQPSLHRMSIMAHRARVMPWRTFR 560

Query: 543 FNECVCA 563
           FNECVC+
Sbjct: 561 FNECVCS 567

[93][TOP]
>UniRef100_UPI000023CDC4 hypothetical protein FG09860.1 n=1 Tax=Gibberella zeae PH-1
            RepID=UPI000023CDC4
          Length = 2443

 Score =  225 bits (573), Expect = 2e-57
 Identities = 114/188 (60%), Positives = 136/188 (72%), Gaps = 2/188 (1%)
 Frame = +3

Query: 3    MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
            M+ WE+LQ + A ++NSD   L       K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 1312 MEQWEYLQTQIAMYVNSDVPGLQQ-PGFGKTTRGFCQRLKGKQGRFRGNLSGKRVDFSGR 1370

Query: 183  TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDD- 359
            TVISPDPNL +DQV +P  VA+ LTYPERV +HN ++L   V  GPD +PGA  V   D 
Sbjct: 1371 TVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCVKNGPDVWPGAQRVIKSDE 1430

Query: 360  -GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
             G  + L++GNR+ +A+DL  G +VERHL D D+VLFNRQPSLH++SIMSH AKV P RT
Sbjct: 1431 GGYLQSLKFGNREYIARDLKFGDIVERHLEDNDIVLFNRQPSLHKLSIMSHLAKVRPWRT 1490

Query: 537  FRFNECVC 560
            FR NECVC
Sbjct: 1491 FRLNECVC 1498

[94][TOP]
>UniRef100_C4JWU1 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
           RepID=C4JWU1_UNCRE
          Length = 1435

 Score =  225 bits (573), Expect = 2e-57
 Identities = 110/184 (59%), Positives = 138/184 (75%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+++Q++ A ++NSD   L   A   KP+RGI QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 325 WDYMQLQIAVYINSDVPGLQK-ADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLR+D+V +P  VA  +TYPERVT++N+++L   +  G   +PGAN++       K
Sbjct: 384 SPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERIRNGTKVWPGANYLSKRGTTFK 443

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
            FL+YGN + +A  L  G VVERHL DGD+VLFNRQPSLH++SI+SH  KV PHRTFR N
Sbjct: 444 VFLKYGNLRLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHFVKVRPHRTFRLN 503

Query: 549 ECVC 560
           ECVC
Sbjct: 504 ECVC 507

[95][TOP]
>UniRef100_Q29CI9 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
           pseudoobscura RepID=Q29CI9_DROPS
          Length = 644

 Score =  224 bits (572), Expect = 3e-57
 Identities = 109/186 (58%), Positives = 139/186 (74%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A + +S+ + +P   +  K  RGI QRLKGK GRFR NLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRT 366

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N + +   V  GP  +PGAN+V+    +
Sbjct: 367 VISPDPNLMINQVGVPVRVAKILTYPERVNLANIRHMKHLVRNGPGKHPGANYVQQRGSS 426

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G +VERHL D D+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 427 FKKYLAYGNREKVAQELKCGDIVERHLCDNDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 486

Query: 543 FNECVC 560
           FNEC C
Sbjct: 487 FNECAC 492

[96][TOP]
>UniRef100_Q0CS43 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
           RepID=Q0CS43_ASPTN
          Length = 1450

 Score =  224 bits (572), Expect = 3e-57
 Identities = 110/187 (58%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 322 MECWDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 380

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLRVD+V +P  VA+ +TYPE VT++N+++L   V  G   +PGAN++     
Sbjct: 381 TVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYLMKKGA 440

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           + K FL+YGN   +A  +  G VVERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTF
Sbjct: 441 DYKTFLKYGNLNMIADQIQEGDVVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTF 500

Query: 540 RFNECVC 560
           R NECVC
Sbjct: 501 RLNECVC 507

[97][TOP]
>UniRef100_A2QU24 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
           RepID=A2QU24_ASPNC
          Length = 1450

 Score =  224 bits (572), Expect = 3e-57
 Identities = 110/187 (58%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 322 MECWDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 380

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV-ETDD 359
           TVISPDPNLRVD+V +P  VA+ +TYPE VT++N+++L   V  G   +PGAN++ +   
Sbjct: 381 TVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYIMKKGQ 440

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             K FL+YGN   +A  L  G V+ERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTF
Sbjct: 441 TFKLFLKYGNLNMIADQLQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTF 500

Query: 540 RFNECVC 560
           R NECVC
Sbjct: 501 RLNECVC 507

[98][TOP]
>UniRef100_Q1DVM7 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
           RepID=Q1DVM7_COCIM
          Length = 1430

 Score =  224 bits (571), Expect = 3e-57
 Identities = 111/184 (60%), Positives = 137/184 (74%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+++Q++ A ++NSD   L   A   KP+RGI QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 325 WDYMQLQIAVYINSDVPGLQK-ADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLR+D+V +P  VA  +TYPERVT++N+++L   V  G   +PGAN++       K
Sbjct: 384 SPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPGANYLSKRGTTFK 443

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
            FL+YGN   +A  L  G VVERHL DGD+VLFNRQPSLH++SI+SH  KV PHRTFR N
Sbjct: 444 VFLKYGNLNLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHFVKVRPHRTFRLN 503

Query: 549 ECVC 560
           ECVC
Sbjct: 504 ECVC 507

[99][TOP]
>UniRef100_C5PCH6 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735
           delta SOWgp RepID=C5PCH6_COCP7
          Length = 1444

 Score =  224 bits (571), Expect = 3e-57
 Identities = 111/184 (60%), Positives = 137/184 (74%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+++Q++ A ++NSD   L   A   KP+RGI QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 325 WDYMQLQIAVYINSDVPGLQK-ADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLR+D+V +P  VA  +TYPERVT++N+++L   V  G   +PGAN++       K
Sbjct: 384 SPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPGANYLSKRGTTFK 443

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
            FL+YGN   +A  L  G VVERHL DGD+VLFNRQPSLH++SI+SH  KV PHRTFR N
Sbjct: 444 VFLKYGNLNLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHFVKVRPHRTFRLN 503

Query: 549 ECVC 560
           ECVC
Sbjct: 504 ECVC 507

[100][TOP]
>UniRef100_C5FEK3 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
           RepID=C5FEK3_NANOT
          Length = 1443

 Score =  224 bits (571), Expect = 3e-57
 Identities = 109/186 (58%), Positives = 142/186 (76%), Gaps = 3/186 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLAST--AKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           W+++Q++ A ++NSD   +P L +T   K +RG+ QRLKGK GRFRGNLSGKRVDFSGRT
Sbjct: 324 WDYMQLQIAVYINSD---IPGLQNTDSKKSIRGLCQRLKGKQGRFRGNLSGKRVDFSGRT 380

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDDG 362
           VISPDPNLR+D+V +P  VA  +TYPERVT++N+++L   V  G  T+PGAN+ ++  + 
Sbjct: 381 VISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCVRNGTKTWPGANYLIKQGNS 440

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            + FL+YGN   +A  L  G +VERHL DGD+VLFNRQPSLH++SI+SH  KV PHRTFR
Sbjct: 441 FRLFLKYGNLNMIANQLSEGDIVERHLEDGDIVLFNRQPSLHKLSILSHFVKVRPHRTFR 500

Query: 543 FNECVC 560
            NECVC
Sbjct: 501 LNECVC 506

[101][TOP]
>UniRef100_B6H2R1 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum
           Wisconsin 54-1255 RepID=B6H2R1_PENCW
          Length = 1448

 Score =  224 bits (571), Expect = 3e-57
 Identities = 108/187 (57%), Positives = 142/187 (75%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 322 MECWDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 380

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGAN-FVETDD 359
           TVISPDPNLRVD+V +P  VA+ +TYPE VT++N+++L   +  G + +PGAN  V+   
Sbjct: 381 TVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKWPGANLIVKKGT 440

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           G ++ L+Y N +++A  L  G +VERHL DGD+VLFNRQPSLH++SI+SH AK+ PHRTF
Sbjct: 441 GFRQMLKYSNTQRMADQLQEGDLVERHLEDGDIVLFNRQPSLHKLSILSHFAKIRPHRTF 500

Query: 540 RFNECVC 560
           R NECVC
Sbjct: 501 RLNECVC 507

[102][TOP]
>UniRef100_B6AIF4 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
           RepID=B6AIF4_9CRYT
          Length = 1803

 Score =  224 bits (570), Expect = 5e-57
 Identities = 111/190 (58%), Positives = 142/190 (74%), Gaps = 3/190 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTA---KPLRGISQRLKGKTGRFRGNLSGKRVDF 173
           +  WE+LQ++  R +N++A  +  L ++    K  RGI QRLKGK GRFRGNLSGKRVDF
Sbjct: 301 LGNWEFLQLQCTRLINAEAPGVNQLLASKNIPKAGRGICQRLKGKEGRFRGNLSGKRVDF 360

Query: 174 SGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVET 353
           SGRTVISPDPN+ VD+V +P+ +AR +TYPERV  HN +RL  AV+ G + +PGA +V  
Sbjct: 361 SGRTVISPDPNVAVDEVVVPVVIARIMTYPERVNSHNIERLRDAVLNGHNIWPGACYVYK 420

Query: 354 DDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHR 533
            +G+K  LRY NR+ V++ L +G VVERH++ GD VLFNRQPSLHR+SIMSH   V+P R
Sbjct: 421 TNGSKSSLRYANRRIVSERLEIGDVVERHMITGDSVLFNRQPSLHRLSIMSHRVVVMPWR 480

Query: 534 TFRFNECVCA 563
           TFRFNEC CA
Sbjct: 481 TFRFNECACA 490

[103][TOP]
>UniRef100_Q2U3T5 DNA-directed RNA polymerase n=1 Tax=Aspergillus oryzae
           RepID=Q2U3T5_ASPOR
          Length = 1447

 Score =  224 bits (570), Expect = 5e-57
 Identities = 111/187 (59%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 322 MECWDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 380

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDD 359
           TVISPDPNLRVD+V +P  VA+ +TYPE VT++N+++L   V  G   +PGAN+ V+   
Sbjct: 381 TVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYLVKKGS 440

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             K FL+YG+   +A  L  G VVERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTF
Sbjct: 441 TFKTFLKYGSLNMIADQLQEGDVVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTF 500

Query: 540 RFNECVC 560
           R NECVC
Sbjct: 501 RLNECVC 507

[104][TOP]
>UniRef100_C5JRK1 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis
           SLH14081 RepID=C5JRK1_AJEDS
          Length = 1456

 Score =  224 bits (570), Expect = 5e-57
 Identities = 109/184 (59%), Positives = 138/184 (75%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFS RTVI
Sbjct: 325 WDYMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSARTVI 383

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLRVD+V +P  +A  +TYPE+VT++N+++L   +  G  T+PGAN+V     N K
Sbjct: 384 SPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVFKKSQNFK 443

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
             L++GN   VA DL  G +VERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTFR N
Sbjct: 444 MNLKFGNPNLVANDLEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLN 503

Query: 549 ECVC 560
           ECVC
Sbjct: 504 ECVC 507

[105][TOP]
>UniRef100_C5GRI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3
           RepID=C5GRI8_AJEDR
          Length = 1456

 Score =  224 bits (570), Expect = 5e-57
 Identities = 109/184 (59%), Positives = 138/184 (75%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFS RTVI
Sbjct: 325 WDYMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSARTVI 383

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLRVD+V +P  +A  +TYPE+VT++N+++L   +  G  T+PGAN+V     N K
Sbjct: 384 SPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVFKKSQNFK 443

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
             L++GN   VA DL  G +VERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTFR N
Sbjct: 444 MNLKFGNPNLVANDLEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLN 503

Query: 549 ECVC 560
           ECVC
Sbjct: 504 ECVC 507

[106][TOP]
>UniRef100_B8NTG3 DNA-directed RNA polymerase n=1 Tax=Aspergillus flavus NRRL3357
           RepID=B8NTG3_ASPFN
          Length = 1436

 Score =  224 bits (570), Expect = 5e-57
 Identities = 111/187 (59%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 322 MECWDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 380

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDD 359
           TVISPDPNLRVD+V +P  VA+ +TYPE VT++N+++L   V  G   +PGAN+ V+   
Sbjct: 381 TVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYLVKKGS 440

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             K FL+YG+   +A  L  G VVERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTF
Sbjct: 441 TFKTFLKYGSLNMIADQLQEGDVVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTF 500

Query: 540 RFNECVC 560
           R NECVC
Sbjct: 501 RLNECVC 507

[107][TOP]
>UniRef100_A1CLD8 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
           RepID=A1CLD8_ASPCL
          Length = 1449

 Score =  223 bits (569), Expect = 6e-57
 Identities = 109/187 (58%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 322 MECWDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 380

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDD 359
           TVISPDPNLRVD+V +P  VA+ +TYPE V+++N+++L   V  G   +PGAN+ ++   
Sbjct: 381 TVISPDPNLRVDEVAVPELVAKNMTYPEVVSRYNKEKLQQRVRNGTKKWPGANYIIKKGS 440

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             K FL+YGN   +A  L  G V+ERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTF
Sbjct: 441 DFKLFLKYGNLNMIADQLQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTF 500

Query: 540 RFNECVC 560
           R NECVC
Sbjct: 501 RLNECVC 507

[108][TOP]
>UniRef100_B9FFW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
           RepID=B9FFW1_ORYSJ
          Length = 1321

 Score =  223 bits (568), Expect = 8e-57
 Identities = 108/185 (58%), Positives = 138/185 (74%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           D W+ LQ++   ++NSDA +LP         RG+ QRLKGKTGRFRGNLSGKR +++GRT
Sbjct: 303 DCWQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRT 357

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNLR+ +V IP+ +AR LTYPERV+ +N ++L   +  GP  +PGANF+   DG 
Sbjct: 358 VISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGT 417

Query: 366 KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           K  L+Y +R+  A+DL  G VVERHL DGD+VLFNRQPSLHR+SIMSH A+++P RT RF
Sbjct: 418 KLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRF 477

Query: 546 NECVC 560
           NE VC
Sbjct: 478 NESVC 482

[109][TOP]
>UniRef100_Q7X881 DNA-directed RNA polymerase n=3 Tax=Oryza sativa RepID=Q7X881_ORYSJ
          Length = 1383

 Score =  223 bits (568), Expect = 8e-57
 Identities = 108/185 (58%), Positives = 138/185 (74%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           D W+ LQ++   ++NSDA +LP         RG+ QRLKGKTGRFRGNLSGKR +++GRT
Sbjct: 302 DCWQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRT 356

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNLR+ +V IP+ +AR LTYPERV+ +N ++L   +  GP  +PGANF+   DG 
Sbjct: 357 VISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGT 416

Query: 366 KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           K  L+Y +R+  A+DL  G VVERHL DGD+VLFNRQPSLHR+SIMSH A+++P RT RF
Sbjct: 417 KLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRF 476

Query: 546 NECVC 560
           NE VC
Sbjct: 477 NESVC 481

[110][TOP]
>UniRef100_C8VPJ2 Putative uncharacterized protein n=2 Tax=Emericella nidulans
           RepID=C8VPJ2_EMENI
          Length = 1445

 Score =  223 bits (568), Expect = 8e-57
 Identities = 111/188 (59%), Positives = 140/188 (74%), Gaps = 2/188 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 322 MECWDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 380

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLRVD+V +P  VA+ +TYPE V ++N+++L   V  G   +PGAN++    G
Sbjct: 381 TVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPGANYI-IKKG 439

Query: 363 N--KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
           N  K  L+YGN K +A  L  G +VERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRT
Sbjct: 440 NPLKTMLKYGNLKFIADQLQEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRT 499

Query: 537 FRFNECVC 560
           FR NECVC
Sbjct: 500 FRLNECVC 507

[111][TOP]
>UniRef100_C6HPI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus H143
           RepID=C6HPI8_AJECH
          Length = 1333

 Score =  223 bits (568), Expect = 8e-57
 Identities = 109/184 (59%), Positives = 139/184 (75%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 292 WDYMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVI 350

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLRV++V +P  VA  +TYPE+VT++N+++L   +  G  T+PGAN+V     N K
Sbjct: 351 SPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVLKKSQNFK 410

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
             L++GN   VA +L  G +VERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTFR N
Sbjct: 411 MNLKFGNPNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLN 470

Query: 549 ECVC 560
           ECVC
Sbjct: 471 ECVC 474

[112][TOP]
>UniRef100_C0NZL8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
           RepID=C0NZL8_AJECG
          Length = 1456

 Score =  223 bits (568), Expect = 8e-57
 Identities = 109/184 (59%), Positives = 139/184 (75%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 325 WDYMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLRV++V +P  VA  +TYPE+VT++N+++L   +  G  T+PGAN+V     N K
Sbjct: 384 SPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVLKKSQNFK 443

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
             L++GN   VA +L  G +VERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTFR N
Sbjct: 444 MNLKFGNPNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLN 503

Query: 549 ECVC 560
           ECVC
Sbjct: 504 ECVC 507

[113][TOP]
>UniRef100_A6RGX8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
           RepID=A6RGX8_AJECN
          Length = 1439

 Score =  223 bits (568), Expect = 8e-57
 Identities = 109/184 (59%), Positives = 139/184 (75%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 325 WDYMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLRV++V +P  VA  +TYPE+VT++N+++L   +  G  T+PGAN+V     N K
Sbjct: 384 SPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVLKKSQNFK 443

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
             L++GN   VA +L  G +VERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTFR N
Sbjct: 444 MNLKFGNPNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLN 503

Query: 549 ECVC 560
           ECVC
Sbjct: 504 ECVC 507

[114][TOP]
>UniRef100_C9SQ00 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Verticillium
           albo-atrum VaMs.102 RepID=C9SQ00_9PEZI
          Length = 1456

 Score =  223 bits (567), Expect = 1e-56
 Identities = 114/188 (60%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ WE+LQ++ A ++NSD   L       K +RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 317 MEQWEYLQLQIAMYVNSDVPGLQQ-PGFGKTVRGFCQRLKGKQGRFRGNLSGKRVDFSGR 375

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDD- 359
           TVISPDPNL + QV IP+ VA+ LTYPERV  ++ K+L   V  GPD +PGA  V   D 
Sbjct: 376 TVISPDPNLGITQVAIPILVAKNLTYPERVNDYSLKKLRKCVQNGPDVWPGAQQVIKSDE 435

Query: 360 -GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
            G K  L++GNR +VA+DL +G VVERH+ D D+VLFNRQPSLH++SIMSH  KV P RT
Sbjct: 436 GGYKISLKFGNRGQVARDLKVGDVVERHIEDNDIVLFNRQPSLHKLSIMSHLVKVRPWRT 495

Query: 537 FRFNECVC 560
           FR NECVC
Sbjct: 496 FRLNECVC 503

[115][TOP]
>UniRef100_B0XZZ0 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
           RepID=B0XZZ0_ASPFC
          Length = 1453

 Score =  223 bits (567), Expect = 1e-56
 Identities = 108/184 (58%), Positives = 138/184 (75%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 325 WDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDDGNK 368
           SPDPNLRVD+V +P  VA+ +TYPE VT++N+++L   V  G   +PGAN+ ++     K
Sbjct: 384 SPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYIIKKGSDFK 443

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
            FL+YGN   +A  +  G V+ERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTFR N
Sbjct: 444 LFLKYGNLNMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLN 503

Query: 549 ECVC 560
           ECVC
Sbjct: 504 ECVC 507

[116][TOP]
>UniRef100_A1D5Y9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
           RepID=A1D5Y9_NEOFI
          Length = 1453

 Score =  223 bits (567), Expect = 1e-56
 Identities = 108/184 (58%), Positives = 138/184 (75%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+++Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 325 WDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVI 383

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDDGNK 368
           SPDPNLRVD+V +P  VA+ +TYPE VT++N+++L   V  G   +PGAN+ ++     K
Sbjct: 384 SPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPGANYIIKKGSDFK 443

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
            FL+YGN   +A  +  G V+ERH+ DGD+VLFNRQPSLH++SI+SH AKV PHRTFR N
Sbjct: 444 LFLKYGNLNMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLN 503

Query: 549 ECVC 560
           ECVC
Sbjct: 504 ECVC 507

[117][TOP]
>UniRef100_Q4P157 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
           RepID=Q4P157_USTMA
          Length = 1400

 Score =  221 bits (564), Expect = 2e-56
 Identities = 111/185 (60%), Positives = 141/185 (76%), Gaps = 2/185 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           WE+LQ+  A ++NS+   +P      KP RG  QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 309 WEFLQLTVALYINSELPGVPTQPGQ-KPSRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVI 367

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF-VETDDGNK 368
            PDPNL++D+V +P RVA+ LTYPERV +HN ++L  AV  G D +PGAN+ ++   G K
Sbjct: 368 GPDPNLKIDEVAVPQRVAKILTYPERVFQHNIEQLRQAVRNGTDIHPGANYLMDGKTGFK 427

Query: 369 RFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           RFL++ G R+++A+ L +G VVERH+ DGD+VLFNRQPSLH++SIMSH AK+ P RTFR 
Sbjct: 428 RFLKFPGMREELAEKLRVGDVVERHIRDGDIVLFNRQPSLHKLSIMSHRAKIRPWRTFRL 487

Query: 546 NECVC 560
           NEC C
Sbjct: 488 NECAC 492

[118][TOP]
>UniRef100_Q5CWY0 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium parvum
           RepID=Q5CWY0_CRYPV
          Length = 1871

 Score =  221 bits (563), Expect = 3e-56
 Identities = 109/190 (57%), Positives = 139/190 (73%), Gaps = 3/190 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTA---KPLRGISQRLKGKTGRFRGNLSGKRVDF 173
           +  WE+LQ++  R +N+DA  +  L ++    K  RG+ QRLKGK GRFRGNLSGKRVDF
Sbjct: 300 LGNWEFLQLQCTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDF 359

Query: 174 SGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVET 353
           SGRTVISPDPN+ VD+V +P+ +A+ LTYPERV   N   L  AV+ G D +PGA +V  
Sbjct: 360 SGRTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPGACYVYK 419

Query: 354 DDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHR 533
            +G+K  LRY NR+ V++ L +G +VERH+  GD+VLFNRQPSLHR+SIMSH   V+P R
Sbjct: 420 SNGSKSSLRYANRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLHRLSIMSHKVVVMPWR 479

Query: 534 TFRFNECVCA 563
           TFRFNEC CA
Sbjct: 480 TFRFNECACA 489

[119][TOP]
>UniRef100_Q5CK97 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
           RepID=Q5CK97_CRYHO
          Length = 1869

 Score =  221 bits (563), Expect = 3e-56
 Identities = 109/190 (57%), Positives = 139/190 (73%), Gaps = 3/190 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTA---KPLRGISQRLKGKTGRFRGNLSGKRVDF 173
           +  WE+LQ++  R +N+DA  +  L ++    K  RG+ QRLKGK GRFRGNLSGKRVDF
Sbjct: 300 LGNWEFLQLQCTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDF 359

Query: 174 SGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVET 353
           SGRTVISPDPN+ VD+V +P+ +A+ LTYPERV   N   L  AV+ G D +PGA +V  
Sbjct: 360 SGRTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPGACYVYK 419

Query: 354 DDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHR 533
            +G+K  LRY NR+ V++ L +G +VERH+  GD+VLFNRQPSLHR+SIMSH   V+P R
Sbjct: 420 SNGSKSSLRYANRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLHRLSIMSHKVVVMPWR 479

Query: 534 TFRFNECVCA 563
           TFRFNEC CA
Sbjct: 480 TFRFNECACA 489

[120][TOP]
>UniRef100_C1GGI7 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
           Pb18 RepID=C1GGI7_PARBD
          Length = 1458

 Score =  221 bits (563), Expect = 3e-56
 Identities = 107/184 (58%), Positives = 137/184 (74%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+ +Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFS RTVI
Sbjct: 325 WDHMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSSRTVI 383

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLR+D+V +P+ VA  +TYPE+VT++N+++L   V  G  T+PGAN+V     N K
Sbjct: 384 SPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKEKLRQCVRNGTKTWPGANYVLKKSQNFK 443

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
             L++GN   +A +L  G +VERH+ DGD+VLFNRQPSLH++SI+SH  KV PHRTFR N
Sbjct: 444 MNLKFGNPNLIANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFVKVRPHRTFRLN 503

Query: 549 ECVC 560
           ECVC
Sbjct: 504 ECVC 507

[121][TOP]
>UniRef100_C0SHD3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
           Pb03 RepID=C0SHD3_PARBP
          Length = 1449

 Score =  221 bits (563), Expect = 3e-56
 Identities = 107/184 (58%), Positives = 137/184 (74%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+ +Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFS RTVI
Sbjct: 316 WDHMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSSRTVI 374

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLR+D+V +P+ VA  +TYPE+VT++N+++L   V  G  T+PGAN+V     N K
Sbjct: 375 SPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKEKLRQCVRNGTKTWPGANYVLKKSQNFK 434

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
             L++GN   +A +L  G +VERH+ DGD+VLFNRQPSLH++SI+SH  KV PHRTFR N
Sbjct: 435 MNLKFGNPNLIANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFVKVRPHRTFRLN 494

Query: 549 ECVC 560
           ECVC
Sbjct: 495 ECVC 498

[122][TOP]
>UniRef100_A7EYX3 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980
           UF-70 RepID=A7EYX3_SCLS1
          Length = 1459

 Score =  221 bits (562), Expect = 4e-56
 Identities = 110/187 (58%), Positives = 137/187 (73%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NSD   L       K +RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 318 MEQWDFLQLQIAMYVNSDVPGLQQ-PGFGKAIRGFCQRLKGKQGRFRGNLSGKRVDFSGR 376

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA-NFVETDD 359
           TVISPDPNL +D+V +P+ VA+ LTYPERV + N ++L   VI GP+ +PGA   V+ D 
Sbjct: 377 TVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRKCVINGPNVHPGAQQIVKKDS 436

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            +K  L++  R   AK L +G VVERHL DGD+VLFNRQPSLH++SIMSH AK+ P RTF
Sbjct: 437 NHKISLKFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLHKLSIMSHYAKIRPWRTF 496

Query: 540 RFNECVC 560
           R NECVC
Sbjct: 497 RLNECVC 503

[123][TOP]
>UniRef100_C1GX38 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
           Pb01 RepID=C1GX38_PARBA
          Length = 1425

 Score =  220 bits (561), Expect = 5e-56
 Identities = 107/184 (58%), Positives = 136/184 (73%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+ +Q++ A ++NSD   L   A   KP+RG  QRLKGK GRFRGNLSGKRVDFS RTVI
Sbjct: 293 WDHMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSSRTVI 351

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN-K 368
           SPDPNLR+D+V +P+ VA  +TYPE+VT++N+ +L   V  G  T+PGAN+V     N K
Sbjct: 352 SPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKDKLRQCVRNGTKTWPGANYVLKKSQNFK 411

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
             L++GN   +A +L  G +VERH+ DGD+VLFNRQPSLH++SI+SH  KV PHRTFR N
Sbjct: 412 MNLKFGNPNLIANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFVKVRPHRTFRLN 471

Query: 549 ECVC 560
           ECVC
Sbjct: 472 ECVC 475

[124][TOP]
>UniRef100_A6SCV1 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10
           RepID=A6SCV1_BOTFB
          Length = 1468

 Score =  220 bits (561), Expect = 5e-56
 Identities = 109/187 (58%), Positives = 137/187 (73%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NSD   L       K +RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 315 MEQWDFLQLQIAMYVNSDVPGLQQ-PGFGKAIRGFCQRLKGKQGRFRGNLSGKRVDFSGR 373

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA-NFVETDD 359
           TVISPDPNL +D+V +P+ VA+ LTYPERV + N ++L   VI GP+ +PGA   ++ D 
Sbjct: 374 TVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGPNVHPGAQQIIKKDS 433

Query: 360 GNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            +K  L++  R   AK L +G VVERHL DGD+VLFNRQPSLH++SIMSH AK+ P RTF
Sbjct: 434 NHKISLKFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLHKLSIMSHYAKIRPWRTF 493

Query: 540 RFNECVC 560
           R NECVC
Sbjct: 494 RLNECVC 500

[125][TOP]
>UniRef100_B9T0Q9 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
           RepID=B9T0Q9_RICCO
          Length = 1383

 Score =  219 bits (558), Expect = 1e-55
 Identities = 107/186 (57%), Positives = 134/186 (72%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           +D W+ LQ   A +MNSD   +P      KPL G  QRLKGK GRFRGNLSGKRV+F+GR
Sbjct: 280 LDSWDGLQAAVALYMNSDV-RVPNNVEVGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGR 338

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL++ +V IP+ +AR L+YPERV+ HN ++L   V  GP  YPGA+ V   DG
Sbjct: 339 TVISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVRYPDG 398

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
           + + L    RK +A++L  G +V+RHL DGDVVLFNRQPSLHR+SIM H A+++P RT R
Sbjct: 399 SSKRLIGSYRKTIAEELTFGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 458

Query: 543 FNECVC 560
           FNE VC
Sbjct: 459 FNESVC 464

[126][TOP]
>UniRef100_A9RSV5 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
           patens RepID=A9RSV5_PHYPA
          Length = 1397

 Score =  219 bits (557), Expect = 1e-55
 Identities = 106/188 (56%), Positives = 143/188 (76%), Gaps = 2/188 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLP--PLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFS 176
           M+ WE LQ + ++ +NS+ T +P     ++ K  RG  QRLKGK GRFRGNLSGKRVDF+
Sbjct: 314 METWELLQSQVSQLINSE-TPVPRSEQPTSGKQPRGFVQRLKGKQGRFRGNLSGKRVDFT 372

Query: 177 GRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETD 356
           GRTVISPDPNL++ +V +PL +A+ LTYPE+V+++N  +L   +I G   +PGANF+   
Sbjct: 373 GRTVISPDPNLKITEVAVPLLMAQLLTYPEKVSRYNIDKLRGRIINGMTKHPGANFIIFP 432

Query: 357 DGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
           DGNK +L++G+R++ A +L  G +VERHL DGD+VLFNRQPSLHR+SIMSH A+++P RT
Sbjct: 433 DGNKLYLKFGDRRRYAAELKYGDIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRT 492

Query: 537 FRFNECVC 560
            RFNE VC
Sbjct: 493 LRFNESVC 500

[127][TOP]
>UniRef100_B0EG66 DNA-directed RNA polymerase n=1 Tax=Entamoeba dispar SAW760
           RepID=B0EG66_ENTDI
          Length = 1379

 Score =  219 bits (557), Expect = 1e-55
 Identities = 113/188 (60%), Positives = 134/188 (71%), Gaps = 3/188 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           D W+ L +  + F+NSD   LP      KPLR I QRLKGK GRFRGNL GKRVDFSGRT
Sbjct: 325 DSWDQLTIAVSMFINSD---LPGCDDKGKPLRSICQRLKGKHGRFRGNLLGKRVDFSGRT 381

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGAN-FVETDDG 362
           VISPDPNL ++Q+G+P  +A  LTYPERVTKHN  +L   VI G + YPG N  +   DG
Sbjct: 382 VISPDPNLDIEQIGVPKLMAIKLTYPERVTKHNIDKLRQLVINGSNIYPGCNSIIGGTDG 441

Query: 363 NKR--FLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
            +R   ++   R+K AKDL +G +VERHL D D+VLFNRQPSLHRISIM H AK++P RT
Sbjct: 442 LRRSMCIKLEMREKFAKDLKIGDIVERHLEDNDIVLFNRQPSLHRISIMCHKAKILPWRT 501

Query: 537 FRFNECVC 560
            RFNECVC
Sbjct: 502 LRFNECVC 509

[128][TOP]
>UniRef100_Q976A5 DNA-directed RNA polymerase n=1 Tax=Sulfolobus tokodaii
           RepID=Q976A5_SULTO
          Length = 884

 Score =  218 bits (556), Expect = 2e-55
 Identities = 107/187 (57%), Positives = 139/187 (74%), Gaps = 2/187 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ   + + +++   +PP    + +PLR ++QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 268 DLWDLLQYHVSTYFDNEIPGIPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSAR 327

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +D+VG+P+ +A+TLT PERVTK N +R+   VI GP+ +PGAN+V   DG
Sbjct: 328 TVISPDPNISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVIRPDG 387

Query: 363 NKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            +  LRY  +RK++A  L  G +VERHL+DGD+VLFNRQPSLHRIS+M H  KV+P RTF
Sbjct: 388 RRIDLRYVKDRKELASSLTPGYIVERHLIDGDIVLFNRQPSLHRISMMGHKVKVLPGRTF 447

Query: 540 RFNECVC 560
           R N  VC
Sbjct: 448 RLNLLVC 454

[129][TOP]
>UniRef100_C4M626 DNA-directed RNA polymerase n=1 Tax=Entamoeba histolytica HM-1:IMSS
           RepID=C4M626_ENTHI
          Length = 1379

 Score =  218 bits (555), Expect = 3e-55
 Identities = 113/188 (60%), Positives = 134/188 (71%), Gaps = 3/188 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           D W+ L V  + F+NS+   LP      KPLR I QRLKGK GRFRGNL GKRVDFSGRT
Sbjct: 325 DSWDQLTVAVSMFINSE---LPGCDDKGKPLRAICQRLKGKHGRFRGNLLGKRVDFSGRT 381

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGAN-FVETDDG 362
           VISPDPNL ++Q+G+P  +A  LTYPERVTKHN  +L   VI G + YPG N  +   DG
Sbjct: 382 VISPDPNLDIEQIGVPKLMAVKLTYPERVTKHNIDKLRQLVINGSNNYPGCNSIIGGSDG 441

Query: 363 NKR--FLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
            +R   ++   R+K AKDL +G +VERHL D D+VLFNRQPSLHRISIM H AK++P RT
Sbjct: 442 LRRSMCIKLEMREKFAKDLKIGDIVERHLEDNDIVLFNRQPSLHRISIMCHRAKILPWRT 501

Query: 537 FRFNECVC 560
            RFNECVC
Sbjct: 502 LRFNECVC 509

[130][TOP]
>UniRef100_C7YT68 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI
           77-13-4 RepID=C7YT68_NECH7
          Length = 1449

 Score =  218 bits (554), Expect = 3e-55
 Identities = 112/188 (59%), Positives = 133/188 (70%), Gaps = 2/188 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ WE+LQ + A ++NSD   L       K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 319 MEQWEYLQTQIAMYVNSDVPGLQQ-PGFGKATRGFCQRLKGKQGRFRGNLSGKRVDFSGR 377

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA-NFVETDD 359
           TVISPDPNL +DQV +P  VA+ LTYPERV +HN ++L   +  G D +PGA   V+ DD
Sbjct: 378 TVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCIKNGVDVWPGAQRVVKQDD 437

Query: 360 GNKRF-LRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
           G     L++ NR   ++DL  G VVERHL D D+VLFNRQPSLH++SIMSH AKV P RT
Sbjct: 438 GGYSINLKFANRDNTSRDLKYGDVVERHLEDNDIVLFNRQPSLHKLSIMSHLAKVRPWRT 497

Query: 537 FRFNECVC 560
           FR NECVC
Sbjct: 498 FRLNECVC 505

[131][TOP]
>UniRef100_Q8SRM3 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi
           RepID=Q8SRM3_ENCCU
          Length = 1349

 Score =  216 bits (551), Expect = 7e-55
 Identities = 111/185 (60%), Positives = 139/185 (75%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W+ LQ++ A  +NS+   LP +    +P+RGI QRLKGK GRFR NLSGKRVDFSGRT
Sbjct: 320 EDWDHLQLQCALLINSE---LPQIGIPGQPVRGIVQRLKGKNGRFRCNLSGKRVDFSGRT 376

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL +++VGIP R+A+ LT  ERVT+ NR++L A V+ GP+ YPGAN+V   +  
Sbjct: 377 VISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPGANYV-VGEKF 435

Query: 366 KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           KRFL YG R     +L  G VVERHL+DGD+VLFNRQPSLHR+SIMSH  +V  ++T RF
Sbjct: 436 KRFLMYGKRD---IELKYGEVVERHLMDGDMVLFNRQPSLHRMSIMSHKVRVHRNKTLRF 492

Query: 546 NECVC 560
           NECVC
Sbjct: 493 NECVC 497

[132][TOP]
>UniRef100_Q2GTS6 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
           RepID=Q2GTS6_CHAGB
          Length = 1290

 Score =  216 bits (551), Expect = 7e-55
 Identities = 113/189 (59%), Positives = 135/189 (71%), Gaps = 3/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ WE+LQ++   ++NSD   L       KP+RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 190 MEQWEFLQLQVGMYVNSDVPGLYQ-PGFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGR 248

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL ++QV +P  VA+ LTYPERV   N ++L   VI GP+ +PGA  +   DG
Sbjct: 249 TVISPDPNLSIEQVAVPELVAKNLTYPERVNHANIEKLRERVITGPNIWPGAQGIIKKDG 308

Query: 363 NKRFLRYGN---RKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHR 533
            K  L+ GN   R+K A +L  G VVERHL D DVVLFNRQPSLH++SIMSH AK+ P R
Sbjct: 309 AKYNLKIGNESLREKHANNLEHGDVVERHLEDNDVVLFNRQPSLHKLSIMSHLAKIRPWR 368

Query: 534 TFRFNECVC 560
           TFR NECVC
Sbjct: 369 TFRLNECVC 377

[133][TOP]
>UniRef100_P11512 DNA-directed RNA polymerase subunit A' n=1 Tax=Sulfolobus
           acidocaldarius RepID=RPOA1_SULAC
          Length = 880

 Score =  216 bits (550), Expect = 1e-54
 Identities = 110/187 (58%), Positives = 136/187 (72%), Gaps = 2/187 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ   A + +++   LPP    + +PLR ++QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 264 DLWDLLQYHVATYFDNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSAR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL +D+VGIP  +AR LT PERVT  N +R+   +I GPD +PGAN+V   DG
Sbjct: 324 TVISPDPNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDG 383

Query: 363 NKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            +  LRY  +RK++A  +  G VVERHLVDGDVVLFNRQPSLHRIS+M+H  +V+P RTF
Sbjct: 384 RRIDLRYVKDRKELASSITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTF 443

Query: 540 RFNECVC 560
           R N   C
Sbjct: 444 RLNLLDC 450

[134][TOP]
>UniRef100_C5KZ53 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
           RepID=C5KZ53_9ALVE
          Length = 1719

 Score =  215 bits (548), Expect = 2e-54
 Identities = 111/187 (59%), Positives = 133/187 (71%), Gaps = 3/187 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+WL  + A  MNS+AT L   A T KP+R I  RLKGK GRFRGNLSGKRV+FSGRTVI
Sbjct: 280 WQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRLKGKEGRFRGNLSGKRVNFSGRTVI 339

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG--- 362
           SPDPNL V +V IP   A  LT+PE V + N   L   VIRG + +PGA+ +    G   
Sbjct: 340 SPDPNLEVTEVIIPQYSAMKLTFPEVVCRTNIDMLRDRVIRGTEGHPGAHIIRLKSGGVK 399

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
           N  F++   R+++A DL  G VVERHL DGDVVLFNRQPSLH++SIM+H AKV+P RTFR
Sbjct: 400 NLAFIKKQIREELAADLQYGDVVERHLQDGDVVLFNRQPSLHKMSIMAHRAKVMPWRTFR 459

Query: 543 FNECVCA 563
           FNECVC+
Sbjct: 460 FNECVCS 466

[135][TOP]
>UniRef100_C5KF34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Perkinsus marinus
           ATCC 50983 RepID=C5KF34_9ALVE
          Length = 465

 Score =  215 bits (548), Expect = 2e-54
 Identities = 111/187 (59%), Positives = 133/187 (71%), Gaps = 3/187 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W+WL  + A  MNS+AT L   A T KP+R I  RLKGK GRFRGNLSGKRV+FSGRTVI
Sbjct: 189 WQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRLKGKEGRFRGNLSGKRVNFSGRTVI 248

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG--- 362
           SPDPNL V +V IP   A  LT+PE V + N   L   VIRG + +PGA+ +    G   
Sbjct: 249 SPDPNLEVTEVIIPQYSAMKLTFPEVVCRTNIDMLRDRVIRGTEGHPGAHIIRLKSGGVK 308

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
           N  F++   R+++A DL  G VVERHL DGDVVLFNRQPSLH++SIM+H AKV+P RTFR
Sbjct: 309 NLAFIKKQIREELAADLQYGDVVERHLQDGDVVLFNRQPSLHKMSIMAHRAKVMPWRTFR 368

Query: 543 FNECVCA 563
           FNECVC+
Sbjct: 369 FNECVCS 375

[136][TOP]
>UniRef100_Q4U940 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
           RepID=Q4U940_THEAN
          Length = 1648

 Score =  214 bits (544), Expect = 5e-54
 Identities = 106/186 (56%), Positives = 139/186 (74%), Gaps = 3/186 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLAST---AKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           W+ +Q +  RF+NSD+  L  L  +   +KP RGI QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 365 WQIIQYQCTRFINSDSPALAQLLLSRRVSKPGRGIFQRLKGKEGRFRGNLSGKRVDFSAR 424

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +D+V +P  +AR LT+PERVTK+N   L  A++ G   +PGA++V   DG
Sbjct: 425 TVISPDPNVGIDEVVVPEWIARRLTFPERVTKYNIHVLKKAILNGVSVWPGASYVNKLDG 484

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
           +K  LR+ N K ++++L +G +VERHL +GD+V+FNRQPSLHR+SIM H A+V+   TFR
Sbjct: 485 SKCSLRFANPKHMSENLQVGDIVERHLWNGDIVIFNRQPSLHRLSIMCHRARVMSGSTFR 544

Query: 543 FNECVC 560
           FNECVC
Sbjct: 545 FNECVC 550

[137][TOP]
>UniRef100_Q4N1T2 DNA-directed RNA polymerase n=1 Tax=Theileria parva
           RepID=Q4N1T2_THEPA
          Length = 1617

 Score =  213 bits (543), Expect = 6e-54
 Identities = 106/186 (56%), Positives = 139/186 (74%), Gaps = 3/186 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLAST---AKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           W+ +Q +  RF+NSD+  L  L  +   +KP RGI QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 357 WQIIQYQCTRFINSDSPALAQLLLSRRVSKPGRGIFQRLKGKEGRFRGNLSGKRVDFSAR 416

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +D+V +P  +AR LT+PERVTK+N   L  A++ G   +PGA++V   DG
Sbjct: 417 TVISPDPNVGIDEVVVPEWIARRLTFPERVTKYNIDVLKKAILNGVSVWPGASYVNKLDG 476

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
           +K  LR+ N K ++++L +G +VERHL +GD+V+FNRQPSLHR+SIM H A+V+   TFR
Sbjct: 477 SKCSLRFANPKHMSENLQVGDIVERHLWNGDIVIFNRQPSLHRLSIMCHRARVMNGSTFR 536

Query: 543 FNECVC 560
           FNECVC
Sbjct: 537 FNECVC 542

[138][TOP]
>UniRef100_Q8U0M4 DNA-directed RNA polymerase n=1 Tax=Pyrococcus furiosus
           RepID=Q8U0M4_PYRFU
          Length = 907

 Score =  212 bits (539), Expect = 2e-53
 Identities = 100/186 (53%), Positives = 137/186 (73%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     ++N++A  +PP    + +PL+ ++QRLKGK GRFRGNLSGKRV+FS R
Sbjct: 267 DLWDLLQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSAR 326

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP + +++VG+P+ VA  LT PE+VT+ N +RL   V+ GPD YPGAN+V   +G
Sbjct: 327 TVISPDPMISINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPGANYVIDPEG 386

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +R +   N++ +A  L +G  VERHL+DGD+VLFNRQPSLHR+SIM+H  +V+P+RTFR
Sbjct: 387 RRRRIMDSNKETLANQLDIGWTVERHLMDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTFR 446

Query: 543 FNECVC 560
            N  VC
Sbjct: 447 LNLAVC 452

[139][TOP]
>UniRef100_UPI000069FEE9 DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)
           (RPC155) (RPC1). n=1 Tax=Xenopus (Silurana) tropicalis
           RepID=UPI000069FEE9
          Length = 477

 Score =  211 bits (536), Expect = 4e-53
 Identities = 98/170 (57%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 306 MEDWDFLQLQCALYINSELSGIPMNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 365

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V + N + +   V  GPD +PGANF++    
Sbjct: 366 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRHT 425

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSH 509
             KRFL+YGNR+K+A++L  G +VERHL+DGD+VLFNRQPSLH++SIM+H
Sbjct: 426 QMKRFLKYGNREKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAH 475

[140][TOP]
>UniRef100_A9VCM2 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
           RepID=A9VCM2_MONBE
          Length = 1414

 Score =  211 bits (536), Expect = 4e-53
 Identities = 107/187 (57%), Positives = 126/187 (67%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M  WE LQV  A + N D   LP      K  RG  QRLKGK GRFRGNLSGKRV++SGR
Sbjct: 292 MQTWEALQVHVALYFNGDLPGLPKDLKPKKAPRGFYQRLKGKQGRFRGNLSGKRVNYSGR 351

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN  +D+V +P  V + LTYPE V  +N +RL AAV  GPD YPGA  +E    
Sbjct: 352 TVISPDPNASIDEVCVPYHVCKILTYPEMVNDYNIQRLRAAVENGPDNYPGAVLLEKSRD 411

Query: 363 NKRF-LRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            + + L + NR+K A++L  G +V RHL+DGD  LFNRQPSLHR+SIM H  K  P RTF
Sbjct: 412 KRTYDLAHCNRQKSARELAKGDIVRRHLIDGDYALFNRQPSLHRMSIMCHRVKARPWRTF 471

Query: 540 RFNECVC 560
           RFNECVC
Sbjct: 472 RFNECVC 478

[141][TOP]
>UniRef100_B4IKC6 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
           RepID=B4IKC6_DROSE
          Length = 1369

 Score =  210 bits (535), Expect = 5e-53
 Identities = 107/186 (57%), Positives = 132/186 (70%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           + W++LQ+  A +  +               RGI QRLKGK GRFR NLSGKRVDFSGRT
Sbjct: 307 EDWDFLQLHVALYSTTT--------------RGIVQRLKGKQGRFRCNLSGKRVDFSGRT 352

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++QVG+P+RVA+ LTYPERV   N + +   V  GP  +PGAN+V+    +
Sbjct: 353 VISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSS 412

Query: 366 -KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K++L YGNR+KVA++L  G VVERHL D D+VLFNRQPSLH++SIM H AKV P RTFR
Sbjct: 413 FKKYLAYGNREKVAQELKCGDVVERHLRDEDIVLFNRQPSLHKMSIMCHRAKVQPQRTFR 472

Query: 543 FNECVC 560
           FNEC C
Sbjct: 473 FNECAC 478

[142][TOP]
>UniRef100_C4V991 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
           RepID=C4V991_NOSCE
          Length = 1335

 Score =  210 bits (535), Expect = 5e-53
 Identities = 111/186 (59%), Positives = 137/186 (73%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           D WE LQ++ A  +NSD   LP +   ++P++GI QRLKGK+GRFR NLSGKRVDFSGRT
Sbjct: 311 DDWESLQLQCALMVNSD---LPQINVQSQPIKGIVQRLKGKSGRFRCNLSGKRVDFSGRT 367

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISP+PNL +DQV +P  +A+ LT PE+VTK N+ RL   V  GP +YPGAN+V      
Sbjct: 368 VISPNPNLSIDQVDVPEFMAKILTIPEKVTKFNKSRLQNLVKNGPKSYPGANYV-IGSKY 426

Query: 366 KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           K+FL YG R    ++L  G VVERHLV+GDVVLFNRQPSLHR+SIMSH   +  ++T RF
Sbjct: 427 KKFLLYGGRD---EELNEGDVVERHLVNGDVVLFNRQPSLHRMSIMSHFVNIHKNKTLRF 483

Query: 546 NECVCA 563
           NECVCA
Sbjct: 484 NECVCA 489

[143][TOP]
>UniRef100_Q7ZXW5 DNA-directed RNA polymerase n=1 Tax=Xenopus laevis
           RepID=Q7ZXW5_XENLA
          Length = 489

 Score =  209 bits (533), Expect = 9e-53
 Identities = 98/173 (56%), Positives = 134/173 (77%), Gaps = 1/173 (0%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NS+ + +P   +  K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 306 MEDWDFLQLQCALYINSELSGIPMNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFSGR 365

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNLR+D+V +P+ VA+ LT+PE+V + N + +   V  GP+ +PGANF++    
Sbjct: 366 TVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPEIHPGANFIQQRHT 425

Query: 363 N-KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
             KRFL+YGNR+K+A++L  G +VERHL+DGD+VLFNRQPSLH++SIM+H  K
Sbjct: 426 QMKRFLKYGNREKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHILK 478

[144][TOP]
>UniRef100_B2VYJ3 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
           Pt-1C-BFP RepID=B2VYJ3_PYRTR
          Length = 1471

 Score =  209 bits (533), Expect = 9e-53
 Identities = 108/197 (54%), Positives = 139/197 (70%), Gaps = 11/197 (5%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NSDA  L       K +RG SQRLKGK GRFR NLSGKRVDFSGR
Sbjct: 322 MEQWDFLQLQIAMYINSDAPGLKQ-QGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDFSGR 380

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVI PDPNL +D+V +P R+A+ LTYPE+VT++N ++L   V  G   YPGAN++ T  G
Sbjct: 381 TVIGPDPNLSIDEVAVPQRIAKNLTYPEKVTRYNIEKLRRLVRNGAQKYPGANYILTGQG 440

Query: 363 -NKRFLRYG----NRKK------VAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSH 509
            NK  ++      +R K       AK L +G +VERH+ DGD+VLFNRQPSLH++SI+SH
Sbjct: 441 PNKDPIKISLIALSRNKGERLDFTAKRLKIGDIVERHIEDGDIVLFNRQPSLHKLSILSH 500

Query: 510 SAKVVPHRTFRFNECVC 560
            AK+ P RTFR NECVC
Sbjct: 501 RAKIRPWRTFRLNECVC 517

[145][TOP]
>UniRef100_C4KIV8 DNA-directed RNA polymerase n=1 Tax=Sulfolobus islandicus M.16.4
           RepID=C4KIV8_SULIK
          Length = 880

 Score =  209 bits (533), Expect = 9e-53
 Identities = 108/187 (57%), Positives = 135/187 (72%), Gaps = 2/187 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ   A + +++   LPP    + +PLR ++QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 264 DLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +D+VG+P  +ARTLT PER+T  N ++L   VI GPD +PGAN+V   DG
Sbjct: 324 TVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG 383

Query: 363 NKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            +  LRY  +RK++A  L  G VVERHL DGDVVLFNRQPSLHRIS+M+H  +V+   TF
Sbjct: 384 RRIDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLKGLTF 443

Query: 540 RFNECVC 560
           R N  VC
Sbjct: 444 RLNLLVC 450

[146][TOP]
>UniRef100_C3MY99 DNA-directed RNA polymerase n=2 Tax=Sulfolobus islandicus
           RepID=C3MY99_SULIM
          Length = 880

 Score =  209 bits (533), Expect = 9e-53
 Identities = 108/187 (57%), Positives = 135/187 (72%), Gaps = 2/187 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ   A + +++   LPP    + +PLR ++QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 264 DLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +D+VG+P  +ARTLT PER+T  N ++L   VI GPD +PGAN+V   DG
Sbjct: 324 TVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG 383

Query: 363 NKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            +  LRY  +RK++A  L  G VVERHL DGDVVLFNRQPSLHRIS+M+H  +V+   TF
Sbjct: 384 RRIDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLKGLTF 443

Query: 540 RFNECVC 560
           R N  VC
Sbjct: 444 RLNLLVC 450

[147][TOP]
>UniRef100_C3MRK3 DNA-directed RNA polymerase n=3 Tax=Sulfolobus islandicus
           RepID=C3MRK3_SULIL
          Length = 880

 Score =  209 bits (533), Expect = 9e-53
 Identities = 108/187 (57%), Positives = 135/187 (72%), Gaps = 2/187 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ   A + +++   LPP    + +PLR ++QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 264 DLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +D+VG+P  +ARTLT PER+T  N ++L   VI GPD +PGAN+V   DG
Sbjct: 324 TVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG 383

Query: 363 NKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            +  LRY  +RK++A  L  G VVERHL DGDVVLFNRQPSLHRIS+M+H  +V+   TF
Sbjct: 384 RRIDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLKGLTF 443

Query: 540 RFNECVC 560
           R N  VC
Sbjct: 444 RLNLLVC 450

[148][TOP]
>UniRef100_A4YCQ9 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348
           RepID=A4YCQ9_METS5
          Length = 886

 Score =  209 bits (533), Expect = 9e-53
 Identities = 106/187 (56%), Positives = 135/187 (72%), Gaps = 2/187 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ   A + +++   LP     + +PLR ++QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 270 DLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSAR 329

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +D+VG+P  VA+ LT PE+VTK N +R+   VI GPD +PGAN+V   DG
Sbjct: 330 TVISPDPNISIDEVGVPYDVAQILTVPEKVTKWNIERMRQYVINGPDKWPGANYVVRPDG 389

Query: 363 NKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            +  LRY  +RK++A  L    +VERHLVDGD+V+FNRQPSLHRIS+M H  +V+P RTF
Sbjct: 390 RRIDLRYVKDRKELAATLAPNFIVERHLVDGDIVIFNRQPSLHRISMMGHKVRVLPGRTF 449

Query: 540 RFNECVC 560
           R N  VC
Sbjct: 450 RLNLLVC 456

[149][TOP]
>UniRef100_B8YB53 DNA-directed RNA polymerase n=1 Tax=Sulfolobus shibatae B12
           RepID=B8YB53_SULSH
          Length = 880

 Score =  209 bits (533), Expect = 9e-53
 Identities = 108/187 (57%), Positives = 135/187 (72%), Gaps = 2/187 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ   A + +++   LPP    + +PLR ++QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 264 DLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +D+VG+P  +ARTLT PER+T  N ++L   VI GPD +PGAN+V   DG
Sbjct: 324 TVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG 383

Query: 363 NKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            +  LRY  +RK++A  L  G VVERHL DGDVVLFNRQPSLHRIS+M+H  +V+   TF
Sbjct: 384 RRIDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLKGLTF 443

Query: 540 RFNECVC 560
           R N  VC
Sbjct: 444 RLNLLVC 450

[150][TOP]
>UniRef100_UPI0001505876 NRPC1; DNA binding / DNA-directed RNA polymerase/ ribonucleoside
           binding / zinc ion binding n=1 Tax=Arabidopsis thaliana
           RepID=UPI0001505876
          Length = 1376

 Score =  209 bits (532), Expect = 1e-52
 Identities = 103/186 (55%), Positives = 135/186 (72%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M  W+ +Q+E AR++NS+            PL GI QRLKGK GRFR NLSGKRV+F+GR
Sbjct: 309 MQVWDTVQIEVARYINSEVRGCQNQPEE-HPLSGILQRLKGKGGRFRANLSGKRVEFTGR 367

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL++ +VGIP+ +A+ LT+PE V++HN ++L   V  GP+ YPGA  V   DG
Sbjct: 368 TVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDG 427

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
           + R L    RK++A +L +G +V+RHL +GDVVLFNRQPSLHR+SIM H A+++P RT R
Sbjct: 428 SSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 487

Query: 543 FNECVC 560
           FNE VC
Sbjct: 488 FNESVC 493

[151][TOP]
>UniRef100_Q9LVH0 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
           RepID=Q9LVH0_ARATH
          Length = 1383

 Score =  209 bits (532), Expect = 1e-52
 Identities = 103/186 (55%), Positives = 135/186 (72%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M  W+ +Q+E AR++NS+            PL GI QRLKGK GRFR NLSGKRV+F+GR
Sbjct: 309 MQVWDTVQIEVARYINSEVRGCQNQPEE-HPLSGILQRLKGKGGRFRANLSGKRVEFTGR 367

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL++ +VGIP+ +A+ LT+PE V++HN ++L   V  GP+ YPGA  V   DG
Sbjct: 368 TVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDG 427

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
           + R L    RK++A +L +G +V+RHL +GDVVLFNRQPSLHR+SIM H A+++P RT R
Sbjct: 428 SSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 487

Query: 543 FNECVC 560
           FNE VC
Sbjct: 488 FNESVC 493

[152][TOP]
>UniRef100_Q0V3B7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0V3B7_PHANO
          Length = 1473

 Score =  209 bits (531), Expect = 2e-52
 Identities = 110/199 (55%), Positives = 138/199 (69%), Gaps = 13/199 (6%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W++LQ++ A ++NSDA  L       K +RG SQRLKGK GRFR NLSGKRVDFSGR
Sbjct: 322 MEQWDFLQLQIAMYINSDAPGLKQ-QGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDFSGR 380

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVI PDPNL +D+V +P RVA+ LTYPE+VT++N K+L   V+ G + YPGAN++  D G
Sbjct: 381 TVIGPDPNLSIDEVAVPQRVAKILTYPEKVTRYNIKKLQKLVLNGANKYPGANYILKDLG 440

Query: 363 N------------KRFLRYGNR-KKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIM 503
                         R  + G+R +  A  L  G VVERHL DGD+VLFNRQPSLH++SI+
Sbjct: 441 PDQDPRKVSLIALSRHDKKGDRLQGPAAALRFGDVVERHLEDGDIVLFNRQPSLHKLSIL 500

Query: 504 SHSAKVVPHRTFRFNECVC 560
           SH AK+ P RTFR NECVC
Sbjct: 501 SHRAKIRPWRTFRLNECVC 519

[153][TOP]
>UniRef100_Q4DZA9 DNA-directed RNA polymerase n=1 Tax=Trypanosoma cruzi
           RepID=Q4DZA9_TRYCR
          Length = 1553

 Score =  208 bits (530), Expect = 2e-52
 Identities = 108/186 (58%), Positives = 139/186 (74%), Gaps = 2/186 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           WE LQ+ AAR ++S     PP   TA  ++  +QRLKGK GRFRGNLSGKRVDFSGR+VI
Sbjct: 314 WEMLQMRAARLIDSALPGFPPHMRTAD-VKSYAQRLKGKHGRFRGNLSGKRVDFSGRSVI 372

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVE-TDDGNK 368
           SPDPNL VD++ +PLRVAR LTYP+RV K N + +   V  GP+ +PGA  V    +G+K
Sbjct: 373 SPDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAVYLAQEGSK 432

Query: 369 RFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           + L +  +R+ ++  L +G VVERH+++GDVVLFNRQPSLHRIS+M+H A+V+P RTFRF
Sbjct: 433 KSLNHERDRESLSARLSIGDVVERHVMNGDVVLFNRQPSLHRISMMAHRARVLPFRTFRF 492

Query: 546 NECVCA 563
           NEC CA
Sbjct: 493 NECCCA 498

[154][TOP]
>UniRef100_Q980R2 DNA-directed RNA polymerase subunit A' n=2 Tax=Sulfolobus
           solfataricus RepID=RPOA1_SULSO
          Length = 880

 Score =  208 bits (530), Expect = 2e-52
 Identities = 104/187 (55%), Positives = 136/187 (72%), Gaps = 2/187 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ   A + +++   LPP    + +PLR ++QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 264 DLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +D+VG+P  +A+TLT PER+T  N ++L   VI GPD +PGAN+V   DG
Sbjct: 324 TVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG 383

Query: 363 NKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
            +  LRY  +RK++A  L  G ++ERHL+DGD+VLFNRQPSLHRIS+M+H  +V+   TF
Sbjct: 384 RRIDLRYVKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTF 443

Query: 540 RFNECVC 560
           R N  VC
Sbjct: 444 RLNLLVC 450

[155][TOP]
>UniRef100_Q9V114 DNA-directed RNA polymerase n=1 Tax=Pyrococcus abyssi
           RepID=Q9V114_PYRAB
          Length = 907

 Score =  208 bits (529), Expect = 3e-52
 Identities = 96/186 (51%), Positives = 138/186 (74%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     ++N++ + +PP    + +PL+ ++QRLKGK GRFRGNLSGKRV+FS R
Sbjct: 270 DLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSAR 329

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP + +++VG+P+++A  LT PE+VT+ N ++L   V+ GPD YPGAN+V   +G
Sbjct: 330 TVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVIDPEG 389

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   NR+ +A+ + +G  VERHL+DGD+VLFNRQPSLHR+SIM+H  +V+P+RTFR
Sbjct: 390 RRIRIMESNRENLARMIDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTFR 449

Query: 543 FNECVC 560
            N  VC
Sbjct: 450 LNLAVC 455

[156][TOP]
>UniRef100_O59227 DNA-directed RNA polymerase n=1 Tax=Pyrococcus horikoshii
           RepID=O59227_PYRHO
          Length = 907

 Score =  208 bits (529), Expect = 3e-52
 Identities = 96/186 (51%), Positives = 138/186 (74%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     ++N++ + +PP    + +PL+ ++QRLKGK GRFRGNLSGKRV+FS R
Sbjct: 270 DLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSAR 329

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP + +++VG+P+++A  LT PE+VT+ N ++L   V+ GPD YPGAN+V   +G
Sbjct: 330 TVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVIDPEG 389

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N++ +AK + +G  VERHLVDGD+VLFNRQPSLHR+SIM+H  +V+P++TFR
Sbjct: 390 RRIRIMESNKENLAKMIDIGWTVERHLVDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFR 449

Query: 543 FNECVC 560
            N  VC
Sbjct: 450 LNLAVC 455

[157][TOP]
>UniRef100_Q5JE33 DNA-directed RNA polymerase n=1 Tax=Thermococcus kodakarensis
           RepID=Q5JE33_PYRKO
          Length = 906

 Score =  207 bits (527), Expect = 4e-52
 Identities = 100/186 (53%), Positives = 136/186 (73%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     ++N++ + +PP    + +PL+ ++QRLKGK GRFRGNLSGKRV+FS R
Sbjct: 270 DLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSAR 329

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP + +++VG+PL VA  LT PE+VT+ N ++L   V+ GP+ YPGAN+V   +G
Sbjct: 330 TVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEG 389

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  L   NR+ +A+ L +G  VERHL DGDVVLFNRQPSLHR+SIM+H  +V+P+RTFR
Sbjct: 390 RRIRLMESNRELIAEKLDIGWTVERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFR 449

Query: 543 FNECVC 560
            N  VC
Sbjct: 450 LNLPVC 455

[158][TOP]
>UniRef100_A3DMP4 DNA-directed RNA polymerase n=1 Tax=Staphylothermus marinus F1
           RepID=A3DMP4_STAMF
          Length = 886

 Score =  207 bits (527), Expect = 4e-52
 Identities = 102/186 (54%), Positives = 134/186 (72%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     + +++A  +P     + K L+G++QRLKGK GRFRGNL GKRVDFS R
Sbjct: 269 DEWELLQYHVTTYFDNEAPGIPVARHRSGKVLKGLAQRLKGKEGRFRGNLRGKRVDFSAR 328

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +++VG+P  VA+ LT PERVT  N + +   V+ GPD +PGAN+V   DG
Sbjct: 329 TVISPDPNISINEVGVPEVVAKILTVPERVTPWNIEEMRRLVLNGPDKWPGANYVIRPDG 388

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  L+Y +RK +A+ L  G +VERHL DGD+VLFNRQPSLHRISIM+H  +V+P++TFR
Sbjct: 389 RRISLKYVDRKAMAETLAPGFIVERHLRDGDIVLFNRQPSLHRISIMAHVVRVLPYKTFR 448

Query: 543 FNECVC 560
            N  VC
Sbjct: 449 LNLLVC 454

[159][TOP]
>UniRef100_P31813 DNA-directed RNA polymerase subunit A' n=1 Tax=Thermococcus celer
           RepID=RPOA1_THECE
          Length = 905

 Score =  207 bits (527), Expect = 4e-52
 Identities = 99/186 (53%), Positives = 136/186 (73%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     ++N++ + +PP    + +PL+ +SQRLKGK GRFRGNLSGKRV+FS R
Sbjct: 270 DLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSAR 329

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP + +++VG+P+ +A  LT PE+VT+ N ++L   V+ GP+ YPGAN+V   +G
Sbjct: 330 TVISPDPMISINEVGVPMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPGANYVIDPEG 389

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  L   N + VA+ L +G  VERHL+DGDVVLFNRQPSLHR+SIM+H  +V+P+RTFR
Sbjct: 390 RRIRLMENNLETVAEKLDIGWTVERHLLDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFR 449

Query: 543 FNECVC 560
            N  VC
Sbjct: 450 LNLSVC 455

[160][TOP]
>UniRef100_A1RWW5 DNA-directed RNA polymerase n=1 Tax=Thermofilum pendens Hrk 5
           RepID=A1RWW5_THEPD
          Length = 888

 Score =  207 bits (526), Expect = 6e-52
 Identities = 101/183 (55%), Positives = 138/183 (75%), Gaps = 2/183 (1%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W  LQ   A + +++   +PP    + +PLR ++QRLKGK GRFRG+L+GKRVDFS R
Sbjct: 268 DLWNLLQFHVATYFDNELPGIPPARHRSGRPLRTLAQRLKGKEGRFRGSLAGKRVDFSSR 327

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL +++VG+P+ VA+ LT PE+VT  N ++L   VI GPD +PGAN++   DG
Sbjct: 328 TVISPDPNLSINEVGVPIDVAKVLTVPEKVTPWNIEKLRKLVINGPDVWPGANYIIKPDG 387

Query: 363 NKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
           ++  LRY  +R+++++ L  G +VERHL+DGDVVLFNRQPSLHRISIM+H  KV+P++TF
Sbjct: 388 SRIDLRYVKHREEISQTLKPGYIVERHLMDGDVVLFNRQPSLHRISIMAHIVKVLPYKTF 447

Query: 540 RFN 548
           R N
Sbjct: 448 RLN 450

[161][TOP]
>UniRef100_B9GIK9 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
           RepID=B9GIK9_POPTR
          Length = 1394

 Score =  206 bits (525), Expect = 8e-52
 Identities = 102/184 (55%), Positives = 128/184 (69%)
 Frame = +3

Query: 9   GWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTV 188
           GW+ LQ     ++NSD   +P      +PL G  QRL GK GRFR NL+GKRV+F+GRTV
Sbjct: 311 GWDELQAVVTLYINSDV-RIPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFTGRTV 369

Query: 189 ISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNK 368
           ISPDPNL++ +V IP+ +AR LTYPERVT HN ++L   V  G   YPGA  V   DG+ 
Sbjct: 370 ISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTYPDGSS 429

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           + L    RK++A++L  G +V RHL DGDVVLFNRQPSLHR+SIM H A+++P RT RFN
Sbjct: 430 KMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 489

Query: 549 ECVC 560
           E VC
Sbjct: 490 ESVC 493

[162][TOP]
>UniRef100_B2ADZ3 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
           RepID=B2ADZ3_PODAN
          Length = 1521

 Score =  206 bits (525), Expect = 8e-52
 Identities = 107/194 (55%), Positives = 135/194 (69%), Gaps = 7/194 (3%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ WE+LQ++   ++NSD   L       K  RG  QRLKGK GRFRGNLSGKRVDFSGR
Sbjct: 324 MEQWEFLQLQVGMYVNSDVPGLVQ-QGFGKVTRGFCQRLKGKQGRFRGNLSGKRVDFSGR 382

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL ++QV +P RVA+ LTYPERV  +N ++L A V  GP  YPGA  +  + G
Sbjct: 383 TVISPDPNLSIEQVAVPERVAKNLTYPERVHANNIQKLKACVRNGPTEYPGALQITKNQG 442

Query: 363 NKRFLRYGNR-------KKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
            +  +++  +       +K A +L +G VVERHL D D+VLFNRQPSLH++SIMSH AK+
Sbjct: 443 EENEMKFLLKHMKPHILEKNADNLRIGDVVERHLEDNDIVLFNRQPSLHKLSIMSHYAKI 502

Query: 522 VPHRTFRFNECVCA 563
            P RTFR NECVC+
Sbjct: 503 RPWRTFRLNECVCS 516

[163][TOP]
>UniRef100_B6YT16 DNA-directed RNA polymerase n=1 Tax=Thermococcus onnurineus NA1
           RepID=B6YT16_THEON
          Length = 905

 Score =  204 bits (520), Expect = 3e-51
 Identities = 96/186 (51%), Positives = 136/186 (73%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     ++N++ + +PP    + +PL+ ++QRLKGK GRFRGNLSGKRV+FS R
Sbjct: 270 DLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSAR 329

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP + +++VG+P+ VA  LT PE+VT+ N ++L   V+ GP+ YPGAN+V   +G
Sbjct: 330 TVISPDPMISINEVGVPIAVAMELTVPEKVTEFNYEKLKKMVLNGPEKYPGANYVIDPEG 389

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  L   N + +A+ L +G  VERHL+DGD+VLFNRQPSLHR+SIM+H  +V+P++TFR
Sbjct: 390 RRIRLMENNLEIIAEKLDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFR 449

Query: 543 FNECVC 560
            N  VC
Sbjct: 450 LNLAVC 455

[164][TOP]
>UniRef100_A2BN34 DNA-directed RNA polymerase n=1 Tax=Hyperthermus butylicus DSM 5456
           RepID=A2BN34_HYPBU
          Length = 881

 Score =  204 bits (520), Expect = 3e-51
 Identities = 100/184 (54%), Positives = 132/184 (71%), Gaps = 1/184 (0%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTA-KPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTV 188
           W  LQ   A + +++   +P       +PL+G++QRLKGK GRFRGNLSGKRVD+S RTV
Sbjct: 268 WTLLQYHVATYFDNELPRIPVARHRGGRPLKGLAQRLKGKEGRFRGNLSGKRVDYSARTV 327

Query: 189 ISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNK 368
           ISPDPN+ +++VG+P+ +A+TLT    VT  N + +   V+ GPD +PGAN+V T DG K
Sbjct: 328 ISPDPNISINEVGVPIEIAKTLTVRTPVTPWNIEEMRRYVLNGPDRWPGANYVITKDGRK 387

Query: 369 RFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
             LRY +RK++A+ L  G  VERHL DGD+VLFNRQPSLHR+SIM+H  KV+P +TFR N
Sbjct: 388 IDLRYADRKRIAEMLEPGWFVERHLRDGDIVLFNRQPSLHRMSIMAHIVKVLPGKTFRLN 447

Query: 549 ECVC 560
             VC
Sbjct: 448 LLVC 451

[165][TOP]
>UniRef100_B8D6G9 DNA-directed RNA polymerase n=1 Tax=Desulfurococcus kamchatkensis
           1221n RepID=B8D6G9_DESK1
          Length = 886

 Score =  204 bits (518), Expect = 5e-51
 Identities = 99/186 (53%), Positives = 132/186 (70%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     + +++   LP     + K L+GI+QRLKGK GRFR NL GKRVDFS R
Sbjct: 269 DEWELLQYHITTYFDNEVPGLPVAKHRSGKTLKGIAQRLKGKEGRFRNNLRGKRVDFSAR 328

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP+L +++VG+P  VA+ LT PERVT  N + +   V+ GP+ +PGAN++   DG
Sbjct: 329 TVISPDPSLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLVLNGPEKWPGANYIVRPDG 388

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K  L++ +RK  A+ L  G +VERHL+DGD+VLFNRQPSLHRIS+M+H  +V+P++TFR
Sbjct: 389 RKISLKFVDRKAAAESLESGFIVERHLMDGDIVLFNRQPSLHRISVMAHVVRVLPYKTFR 448

Query: 543 FNECVC 560
            N  VC
Sbjct: 449 LNLLVC 454

[166][TOP]
>UniRef100_B5IVZ9 DNA-directed RNA polymerase n=1 Tax=Thermococcus barophilus MP
           RepID=B5IVZ9_9EURY
          Length = 906

 Score =  203 bits (516), Expect = 8e-51
 Identities = 97/186 (52%), Positives = 134/186 (72%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     ++N++ + +P     + +PL+ ++QRLKGK GRFRGNLSGKRV+FS R
Sbjct: 270 DLWDLLQYHVTTYINNETSGVPAAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSAR 329

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP L +++VG+PL +A  LT PE+VT  N ++L   V+ GP+ YPGAN+V    G
Sbjct: 330 TVISPDPMLSINEVGVPLAIAMELTVPEKVTDFNIEKLRKMVLNGPEKYPGANYVIDPQG 389

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  L   NR+ +A+ L +G  VERHL+DGD+VLFNRQPSLHR+SIM+H  +V+P++TFR
Sbjct: 390 RRIRLMESNRETIAEMLDIGWTVERHLMDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFR 449

Query: 543 FNECVC 560
            N  VC
Sbjct: 450 LNLAVC 455

[167][TOP]
>UniRef100_C5A208 DNA-directed RNA polymerase n=1 Tax=Thermococcus gammatolerans EJ3
           RepID=C5A208_THEGJ
          Length = 905

 Score =  202 bits (515), Expect = 1e-50
 Identities = 96/186 (51%), Positives = 135/186 (72%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     ++N++ + +PP    + +PL+ ++QRLKGK GRFRGNLSGKRV+FS R
Sbjct: 270 DLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSAR 329

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP + +++VG+PL +A  LT PE+VT+ N ++L   V+ GP+ YPGAN+V   +G
Sbjct: 330 TVISPDPMISINEVGVPLAIAMELTVPEKVTEFNFEKLKQRVLNGPEKYPGANYVIDPEG 389

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  L   N + +A+ L +G  VERHL DGD+VLFNRQPSLHR+SIM+H  +V+P++TFR
Sbjct: 390 RRIRLMENNLETIAERLDIGWTVERHLEDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFR 449

Query: 543 FNECVC 560
            N  VC
Sbjct: 450 LNLPVC 455

[168][TOP]
>UniRef100_A8A925 DNA-directed RNA polymerase n=1 Tax=Ignicoccus hospitalis KIN4/I
           RepID=A8A925_IGNH4
          Length = 889

 Score =  202 bits (514), Expect = 1e-50
 Identities = 103/185 (55%), Positives = 131/185 (70%), Gaps = 2/185 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTV 188
           W  LQ   A F +++   +PP    + KPLR ++QRLKGK GRFR NLSGKRVDFS RTV
Sbjct: 275 WGLLQYHVATFFDNEIPGIPPARHRSGKPLRTLAQRLKGKEGRFRSNLSGKRVDFSARTV 334

Query: 189 ISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNK 368
           ISPDPN+ +++VG+P+ VA+TLT P +VT  N + +   VI GPD +PGAN+V   DG +
Sbjct: 335 ISPDPNISINEVGVPIEVAKTLTVPVKVTPWNIEEMRKLVINGPDKWPGANYVIMKDGRR 394

Query: 369 RFLRYG-NRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
             LRY  +RK +A+ L  G  VERHL DGDVVLFNRQPSLHR+SIM+H  +V+P +TFR 
Sbjct: 395 IDLRYAKDRKIIAESLQPGWTVERHLQDGDVVLFNRQPSLHRMSIMAHLVRVLPGKTFRL 454

Query: 546 NECVC 560
              VC
Sbjct: 455 CPLVC 459

[169][TOP]
>UniRef100_A7AP17 DNA-directed RNA polymerase n=1 Tax=Babesia bovis
           RepID=A7AP17_BABBO
          Length = 1541

 Score =  202 bits (513), Expect = 2e-50
 Identities = 102/186 (54%), Positives = 133/186 (71%), Gaps = 3/186 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLA---STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           W+ LQ++  R +N++A  +  L    + +KP RG+ QRLKGK GRFRGNLSGKRVDFS R
Sbjct: 362 WQCLQLQCTRLINAEAPAVSQLLVSRNISKPGRGVCQRLKGKEGRFRGNLSGKRVDFSAR 421

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ VD+V +P  +A  LT+PE VT  N   +  AV+ G   +PGA +V+  +G
Sbjct: 422 TVISPDPNVGVDEVVVPEWIAMKLTFPEEVTDSNISIMKKAVLNGVSIWPGATYVKKQNG 481

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K  L+Y N K ++ +L +G VV RHL +GDVVLFNRQPSLHR+SIM+H  +V+P  TFR
Sbjct: 482 GKCSLQYANPKYMSDNLTVGDVVLRHLWNGDVVLFNRQPSLHRMSIMAHRVRVMPGSTFR 541

Query: 543 FNECVC 560
           FNECVC
Sbjct: 542 FNECVC 547

[170][TOP]
>UniRef100_Q8ZYQ8 DNA-directed RNA polymerase n=1 Tax=Pyrobaculum aerophilum
           RepID=Q8ZYQ8_PYRAE
          Length = 884

 Score =  202 bits (513), Expect = 2e-50
 Identities = 101/185 (54%), Positives = 135/185 (72%), Gaps = 2/185 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTA-KPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTV 188
           WE LQ   A + +++   +P       +PL+GI+QRLKGK GRFRG+LSGKRV+FS RTV
Sbjct: 276 WELLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTV 335

Query: 189 ISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNK 368
           ISPDP++ +++VG+P  +A+ LT PERVT  N   L   VIRGP+++PGAN+V T +G +
Sbjct: 336 ISPDPHISINEVGVPYDIAKVLTVPERVTAWNVDVLREYVIRGPESWPGANYVVTPEGRR 395

Query: 369 RFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
             LRY  +RK +A+ L  G +VERHL+DGD+VLFNRQPSLHR+S+M H  KV+P RTFR 
Sbjct: 396 IDLRYVKDRKALAERLAPGWIVERHLIDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRL 455

Query: 546 NECVC 560
           +  VC
Sbjct: 456 HLAVC 460

[171][TOP]
>UniRef100_Q5KFV9 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
           RepID=Q5KFV9_CRYNE
          Length = 1466

 Score =  201 bits (512), Expect = 2e-50
 Identities = 103/191 (53%), Positives = 130/191 (68%), Gaps = 8/191 (4%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           WE L    A ++NS A  +  + S  KP+RG  QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 316 WEVLGQAVALYINSQAPGMQTIGS--KPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVI 373

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKR 371
            PDPNLR+D+V +P +VA  L+YPERVT +N + +  A+I G   +PGAN +E    N  
Sbjct: 374 GPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPGANVLERKHENGS 433

Query: 372 FLRYG--------NRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVP 527
            +R           RK+ A++L +G +V RH+ DGD+VLFNRQPSLH++SIM H  +V P
Sbjct: 434 TVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHKLSIMCHRVRVRP 493

Query: 528 HRTFRFNECVC 560
            RTFR NECVC
Sbjct: 494 WRTFRLNECVC 504

[172][TOP]
>UniRef100_B7R289 DNA-directed RNA polymerase n=1 Tax=Thermococcus sp. AM4
           RepID=B7R289_9EURY
          Length = 905

 Score =  201 bits (512), Expect = 2e-50
 Identities = 96/186 (51%), Positives = 135/186 (72%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     ++N++ + +PP    + +PL+ ++QRLKGK GRFRGNLSGKRV+FS R
Sbjct: 270 DLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSAR 329

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP + +++VG+PL +A  LT PE+VT+ N ++L   V+ GP+ YPGAN+V   +G
Sbjct: 330 TVISPDPMISINEVGVPLAIAMELTVPEKVTEFNFEKLRQRVLNGPEKYPGANYVIDPEG 389

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  L   N + +A+ L +G  VERHL DGD+VLFNRQPSLHR+SIM+H  +V+P++TFR
Sbjct: 390 RRIRLMENNLEIIAERLDIGWTVERHLEDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTFR 449

Query: 543 FNECVC 560
            N  VC
Sbjct: 450 LNLPVC 455

[173][TOP]
>UniRef100_Q55QA7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
           RepID=Q55QA7_CRYNE
          Length = 1466

 Score =  201 bits (511), Expect = 3e-50
 Identities = 103/191 (53%), Positives = 130/191 (68%), Gaps = 8/191 (4%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           WE L    A ++NS A  +  + S  KP+RG  QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 316 WEVLGQAVALYINSQAPGMQTIGS--KPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVI 373

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKR 371
            PDPNLR+D+V +P +VA  L+YPERVT +N + +  A+I G   +PGAN +E    N  
Sbjct: 374 GPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQFMRQAIINGSKLHPGANVLERKHENGS 433

Query: 372 FLRYG--------NRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVP 527
            +R           RK+ A++L +G +V RH+ DGD+VLFNRQPSLH++SIM H  +V P
Sbjct: 434 TVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHKLSIMCHRVRVRP 493

Query: 528 HRTFRFNECVC 560
            RTFR NECVC
Sbjct: 494 WRTFRLNECVC 504

[174][TOP]
>UniRef100_B1YC25 DNA-directed RNA polymerase n=1 Tax=Thermoproteus neutrophilus
           V24Sta RepID=B1YC25_THENV
          Length = 884

 Score =  200 bits (509), Expect = 5e-50
 Identities = 100/185 (54%), Positives = 136/185 (73%), Gaps = 2/185 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTA-KPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTV 188
           W+ LQ   A + +++   +P       +PL+GI+QRLKGK GRFRG+LSGKRV+FS RTV
Sbjct: 276 WDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTV 335

Query: 189 ISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNK 368
           ISPDP++ +++VG+P  +A+ LT PERVT+ N   L   V+RGP+T+PGAN+V T +G +
Sbjct: 336 ISPDPHISINEVGVPYDIAKILTVPERVTEWNVDVLREYVMRGPETWPGANYVITPEGRR 395

Query: 369 RFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
             LRY  +++ +A+ L  G +VERHLVDGD+VLFNRQPSLHR+SIM H  KV+P RTFR 
Sbjct: 396 IDLRYVKDKRALAERLAPGWIVERHLVDGDIVLFNRQPSLHRVSIMGHIVKVLPGRTFRL 455

Query: 546 NECVC 560
           +  VC
Sbjct: 456 HLAVC 460

[175][TOP]
>UniRef100_Q38BW7 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
           RepID=Q38BW7_9TRYP
          Length = 1530

 Score =  200 bits (508), Expect = 7e-50
 Identities = 102/186 (54%), Positives = 135/186 (72%), Gaps = 2/186 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           WE LQ+ AAR ++S     PP   T+  L+  +QRLK K GRFR NLSGKRVD+SGR+VI
Sbjct: 314 WEMLQMRAARLLDSSLPGFPPNVRTSD-LKSYAQRLKSKHGRFRCNLSGKRVDYSGRSVI 372

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVE-TDDGNK 368
           SPDPNL VD++ +PL VAR LTYP+RV K N + +   V  GP  +PGA  V    +G+K
Sbjct: 373 SPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVYLAQEGSK 432

Query: 369 RFLR-YGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           + L+   +R ++A  L +G +VERH+++GD+VLFNRQPSLHR+S+M+H A+V+P RTFRF
Sbjct: 433 KSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHRVSMMAHRARVLPFRTFRF 492

Query: 546 NECVCA 563
           NEC CA
Sbjct: 493 NECCCA 498

[176][TOP]
>UniRef100_Q27900 DNA-directed RNA polymerase (Fragment) n=1 Tax=Euplotes
           octocarinatus RepID=Q27900_EUPOC
          Length = 511

 Score =  200 bits (508), Expect = 7e-50
 Identities = 98/183 (53%), Positives = 124/183 (67%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           W  LQ   A+++N+D   LP      K +R   QRLKGK GRFRGNLSGKRVDFSGRTVI
Sbjct: 319 WNQLQYTLAQYINADTPGLPLNMVGNKAIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVI 378

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKR 371
           SPDPN  + QV +P+ +A+  T+P  V  +N + L   +  G + +PGANFV+  +G K 
Sbjct: 379 SPDPNAEIGQVIVPVDMAKIFTFPVCVNSYNIEFLKKLIKNGSEVHPGANFVQFQNGIKM 438

Query: 372 FLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFNE 551
            +R  N   + K+L  G +VERHL+DGD VLFNRQPSLHR+SIM H AKV+P +T RFNE
Sbjct: 439 KIRENNSSVICKELKYGDIVERHLIDGDSVLFNRQPSLHRLSIMCHKAKVMPWKTLRFNE 498

Query: 552 CVC 560
           C C
Sbjct: 499 CCC 501

[177][TOP]
>UniRef100_D0A1W8 DNA-directed RNA polymerase iii largest subunit (Rna polymerase iii
           largest subunit, putative) n=1 Tax=Trypanosoma brucei
           gambiense DAL972 RepID=D0A1W8_TRYBG
          Length = 1530

 Score =  200 bits (508), Expect = 7e-50
 Identities = 102/186 (54%), Positives = 135/186 (72%), Gaps = 2/186 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           WE LQ+ AAR ++S     PP   T+  L+  +QRLK K GRFR NLSGKRVD+SGR+VI
Sbjct: 314 WEMLQMRAARLLDSSLPGFPPNVRTSD-LKSYAQRLKSKHGRFRCNLSGKRVDYSGRSVI 372

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVE-TDDGNK 368
           SPDPNL VD++ +PL VAR LTYP+RV K N + +   V  GP  +PGA  V    +G+K
Sbjct: 373 SPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVYLAQEGSK 432

Query: 369 RFLR-YGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           + L+   +R ++A  L +G +VERH+++GD+VLFNRQPSLHR+S+M+H A+V+P RTFRF
Sbjct: 433 KSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHRVSMMAHRARVLPFRTFRF 492

Query: 546 NECVCA 563
           NEC CA
Sbjct: 493 NECCCA 498

[178][TOP]
>UniRef100_P08968 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Trypanosoma
           brucei brucei RepID=RPC1_TRYBB
          Length = 1530

 Score =  200 bits (508), Expect = 7e-50
 Identities = 102/186 (54%), Positives = 135/186 (72%), Gaps = 2/186 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           WE LQ+ AAR ++S     PP   T+  L+  +QRLK K GRFR NLSGKRVD+SGR+VI
Sbjct: 314 WEMLQMRAARLLDSSLPGFPPNVRTSD-LKSYAQRLKSKHGRFRCNLSGKRVDYSGRSVI 372

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVE-TDDGNK 368
           SPDPNL VD++ +PL VAR LTYP+RV K N + +   V  GP  +PGA  V    +G+K
Sbjct: 373 SPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPGATTVYLAQEGSK 432

Query: 369 RFLR-YGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           + L+   +R ++A  L +G +VERH+++GD+VLFNRQPSLHR+S+M+H A+V+P RTFRF
Sbjct: 433 KSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHRVSMMAHRARVLPFRTFRF 492

Query: 546 NECVCA 563
           NEC CA
Sbjct: 493 NECCCA 498

[179][TOP]
>UniRef100_A4WN99 DNA-directed RNA polymerase n=1 Tax=Pyrobaculum arsenaticum DSM
           13514 RepID=A4WN99_PYRAR
          Length = 884

 Score =  199 bits (505), Expect = 2e-49
 Identities = 101/185 (54%), Positives = 134/185 (72%), Gaps = 2/185 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTA-KPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTV 188
           W+ LQ   A + +++   +P       +PL+GI+QRLKGK GRFRG+LSGKRV+FS RTV
Sbjct: 276 WDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTV 335

Query: 189 ISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNK 368
           ISPDP++ +++VG+P  +A+ LT PE+VT  N   L   VIRGP+T+PGAN+V T +G +
Sbjct: 336 ISPDPHISINEVGVPTDIAKILTVPEKVTAWNIDVLREYVIRGPETWPGANYVVTPEGRR 395

Query: 369 RFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
             LRY  +RK +A+ L  G VVERHL DGD+VLFNRQPSLHR+S+M H  KV+P RTFR 
Sbjct: 396 IDLRYVKDRKALAERLAPGWVVERHLRDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRL 455

Query: 546 NECVC 560
           +  VC
Sbjct: 456 HLAVC 460

[180][TOP]
>UniRef100_A2DEX5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis G3
           RepID=A2DEX5_TRIVA
          Length = 1657

 Score =  198 bits (504), Expect = 2e-49
 Identities = 107/189 (56%), Positives = 131/189 (69%), Gaps = 2/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTA-KPLRGISQRLKGKTGRFRGNLSGKRVDFSG 179
           M+ W  LQ      +NS+A +         KP+ G+ QRLKGK GRFR NLSGKRV++SG
Sbjct: 281 MELWSSLQQNVNSSINSEAADTAAKTKKKNKPVIGVIQRLKGKQGRFRTNLSGKRVNYSG 340

Query: 180 RTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA-NFVETD 356
           RTVISPDPN+ VDQV IP+ +A+ LT+P RVTK N+K L   V  GPD YPGA N ++ D
Sbjct: 341 RTVISPDPNVNVDQVVIPVSMAKILTFPTRVTKFNKKDLMRYVKNGPDKYPGANNIIKAD 400

Query: 357 DGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
            G K  L YGN+++ A++L  G +VERHL+D D VLFNRQPSLHRISIM   AKV+   T
Sbjct: 401 TGFKLSLAYGNKEQRAQELREGDIVERHLLDNDTVLFNRQPSLHRISIMGFRAKVMEWCT 460

Query: 537 FRFNECVCA 563
            RFNE VCA
Sbjct: 461 MRFNESVCA 469

[181][TOP]
>UniRef100_A1RSE8 DNA-directed RNA polymerase n=1 Tax=Pyrobaculum islandicum DSM 4184
           RepID=A1RSE8_PYRIL
          Length = 884

 Score =  198 bits (504), Expect = 2e-49
 Identities = 101/185 (54%), Positives = 134/185 (72%), Gaps = 2/185 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTA-KPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTV 188
           W+ LQ   A + +++   +P       +PL+GI+QRLKGK GRFRG+LSGKRV+FS RTV
Sbjct: 276 WDLLQYHIATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTV 335

Query: 189 ISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNK 368
           ISPDP++ +++VG+P  VA+ LT PERVT  N   L   VIRGP+T+PGAN+V T +G +
Sbjct: 336 ISPDPHISINEVGVPYDVAKILTVPERVTPWNVDILREYVIRGPETWPGANYVVTPEGRR 395

Query: 369 RFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
             LRY  +R+ +A+ L  G +VERHL DGD+VLFNRQPSLHR+S+M H  KV+P RTFR 
Sbjct: 396 IDLRYVKDRRALAERLAPGWIVERHLRDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRL 455

Query: 546 NECVC 560
           +  VC
Sbjct: 456 HLAVC 460

[182][TOP]
>UniRef100_A3MXZ0 DNA-directed RNA polymerase n=1 Tax=Pyrobaculum calidifontis JCM
           11548 RepID=A3MXZ0_PYRCJ
          Length = 884

 Score =  198 bits (503), Expect = 3e-49
 Identities = 98/185 (52%), Positives = 134/185 (72%), Gaps = 2/185 (1%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLASTA-KPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTV 188
           W+ LQ   A + +++   +P       +PL+GI+QRLKGK GRFRG+LS KRV+FS RTV
Sbjct: 276 WDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSSKRVNFSARTV 335

Query: 189 ISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNK 368
           ISPDP++ +++VG+P+ +A+ LT PERVT  N   L   V+RGP+ +PGAN+V T +G +
Sbjct: 336 ISPDPHISINEVGVPIDIAKVLTVPERVTTWNIDALREYVLRGPEAWPGANYVITPEGRR 395

Query: 369 RFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
             LRY  +R+ +A+ L  G +VERHLVDGD+VLFNRQPSLHR+S+M H  KV+P RTFR 
Sbjct: 396 IDLRYVKDRRALAERLAPGWIVERHLVDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRL 455

Query: 546 NECVC 560
           +  VC
Sbjct: 456 HLAVC 460

[183][TOP]
>UniRef100_A4HAF0 DNA-directed RNA polymerase n=1 Tax=Leishmania braziliensis
           RepID=A4HAF0_LEIBR
          Length = 1581

 Score =  196 bits (499), Expect = 8e-49
 Identities = 99/189 (52%), Positives = 131/189 (69%), Gaps = 2/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           ++ WE LQ   AR +++     P    T +  +  +QR+KGK GRFRGNLSGKRVDFSGR
Sbjct: 306 VETWELLQTRVARLLDAALPGFPSHLRTTE-CKSYAQRMKGKQGRFRGNLSGKRVDFSGR 364

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA--NFVETD 356
           +VISPDPNLR+D++ +PLRVAR LTYP+RV   N + +   V  GP  +PGA   ++  +
Sbjct: 365 SVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVYLSKE 424

Query: 357 DGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
              K      +R+ +A  L +G VVERH+++GD VLFNRQPSLHRIS+M+H A+V+P RT
Sbjct: 425 CSRKSLRNARDREAIAARLSIGDVVERHVMNGDYVLFNRQPSLHRISLMAHRARVLPFRT 484

Query: 537 FRFNECVCA 563
           FRFNEC CA
Sbjct: 485 FRFNECCCA 493

[184][TOP]
>UniRef100_Q4Q3H2 DNA-directed RNA polymerase n=1 Tax=Leishmania major
           RepID=Q4Q3H2_LEIMA
          Length = 1582

 Score =  196 bits (498), Expect = 1e-48
 Identities = 98/189 (51%), Positives = 131/189 (69%), Gaps = 2/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           ++ WE LQ   AR +++     P    T +  +  +QR+KGK GRFRGNLSGKRVDFSGR
Sbjct: 306 VETWELLQTRVARLLDAALPGFPSHLRTVE-CKSYAQRMKGKQGRFRGNLSGKRVDFSGR 364

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA--NFVETD 356
           +VISPDPNLR+D++ +PLRVAR LTYP+RV   N + +   V  GP  +PGA   ++  +
Sbjct: 365 SVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVYLSKE 424

Query: 357 DGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
              K      +R+ +A  L +G VVERH+++GD +LFNRQPSLHRIS+M+H A+V+P RT
Sbjct: 425 CSRKSLRNARDREAIAARLSIGDVVERHVMNGDYILFNRQPSLHRISLMAHRARVLPFRT 484

Query: 537 FRFNECVCA 563
           FRFNEC CA
Sbjct: 485 FRFNECCCA 493

[185][TOP]
>UniRef100_A4I9K6 DNA-directed RNA polymerase n=1 Tax=Leishmania infantum
           RepID=A4I9K6_LEIIN
          Length = 1590

 Score =  196 bits (498), Expect = 1e-48
 Identities = 98/189 (51%), Positives = 131/189 (69%), Gaps = 2/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           ++ WE LQ   AR +++     P    T +  +  +QR+KGK GRFRGNLSGKRVDFSGR
Sbjct: 306 VETWELLQTRVARLLDAALPGFPSHLRTVE-CKSYAQRMKGKQGRFRGNLSGKRVDFSGR 364

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA--NFVETD 356
           +VISPDPNLR+D++ +PLRVAR LTYP+RV   N + +   V  GP  +PGA   ++  +
Sbjct: 365 SVISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGALTVYLSKE 424

Query: 357 DGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
              K      +R+ +A  L +G VVERH+++GD +LFNRQPSLHRIS+M+H A+V+P RT
Sbjct: 425 CSRKSLRNARDREAIAARLSIGDVVERHVMNGDYILFNRQPSLHRISLMAHRARVLPFRT 484

Query: 537 FRFNECVCA 563
           FRFNEC CA
Sbjct: 485 FRFNECCCA 493

[186][TOP]
>UniRef100_B6QI35 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC
           18224 RepID=B6QI35_PENMQ
          Length = 1439

 Score =  196 bits (498), Expect = 1e-48
 Identities = 98/189 (51%), Positives = 132/189 (69%), Gaps = 3/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W+++ ++ A ++N D   L       KP R +  RLKGK GRFRGNLSGKRVDFSGR
Sbjct: 320 MECWDYMTLQIAIYINGDVPGLK--GEAGKPTRSLVSRLKGKQGRFRGNLSGKRVDFSGR 377

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA-NFVETDD 359
           TVISPDPNLR+D+V +P  VA+ +TYPE VT++N + L   V  G + +PGA   ++ D 
Sbjct: 378 TVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLQKLVRNGINKWPGAKKVIKKDS 437

Query: 360 GNKRFLRYGNRK--KVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHR 533
           G    L++  +    ++K L +G +VERHLVDGD+ L+NRQPSLH++SI+SH  KV P+R
Sbjct: 438 GLTISLKHSAKSLDTISKQLQIGDLVERHLVDGDIALYNRQPSLHKLSILSHFVKVRPYR 497

Query: 534 TFRFNECVC 560
           TFR NECVC
Sbjct: 498 TFRMNECVC 506

[187][TOP]
>UniRef100_Q8TRB7 DNA-directed RNA polymerase n=1 Tax=Methanosarcina acetivorans
           RepID=Q8TRB7_METAC
          Length = 880

 Score =  196 bits (498), Expect = 1e-48
 Identities = 98/186 (52%), Positives = 129/186 (69%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     F ++  + +PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 264 DLWELLQYHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL +++VG+P+ +ARTLT P  VT  N ++L   V  G D +PGAN+V   DG
Sbjct: 324 TVISPDPNLSINEVGVPMPIARTLTIPAVVTPRNIEQLKVYVRNGEDIHPGANYVFRSDG 383

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N+  +A+ L  G  VER L DGD VLFNRQPSLH++SIM+HS KV+P++TFR
Sbjct: 384 RRIKVTNMNKDDLAEKLEFGWTVERQLKDGDTVLFNRQPSLHKMSIMAHSVKVLPNKTFR 443

Query: 543 FNECVC 560
            N  VC
Sbjct: 444 LNPAVC 449

[188][TOP]
>UniRef100_B8MLB5 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC
           10500 RepID=B8MLB5_TALSN
          Length = 1441

 Score =  196 bits (497), Expect = 1e-48
 Identities = 99/189 (52%), Positives = 131/189 (69%), Gaps = 3/189 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           M+ W+++ ++ A ++N D   L       KP R +  RLKGK GRFRGNLSGKRVDFSGR
Sbjct: 321 MECWDYMTLQIAIYINGDVPGLK--GEAGKPTRSLVSRLKGKQGRFRGNLSGKRVDFSGR 378

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA-NFVETDD 359
           TVISPDPNLR+D+V +P  VA+ +TYPE VT++N + L   V  G + +PGA   ++ D 
Sbjct: 379 TVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLRKLVRNGINKWPGAKKVIKKDS 438

Query: 360 GNKRFLRYGNRK--KVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHR 533
           G    L++  R    +A  L +G +VERHLVDGD+ L+NRQPSLH++SI+SH  KV P+R
Sbjct: 439 GLTISLKHSARSLDLIAAQLQIGDLVERHLVDGDIALYNRQPSLHKLSILSHFVKVRPYR 498

Query: 534 TFRFNECVC 560
           TFR NECVC
Sbjct: 499 TFRMNECVC 507

[189][TOP]
>UniRef100_O27125 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=RPOA1_METTH
          Length = 870

 Score =  196 bits (497), Expect = 1e-48
 Identities = 94/186 (50%), Positives = 132/186 (70%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     + +++A+ +PP    + +PL+ ++QRLKGK GRFR NLSGKRV+FS R
Sbjct: 260 DLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSAR 319

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +++VG+P  +AR +T P  VT+ N  R+   +  GPD +PGAN+V   DG
Sbjct: 320 TVISPDPNISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPGANYVIRPDG 379

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K  +    ++ V ++L  G +VERHL DGD+VLFNRQPSLHR+S+M+H  +V+P++TFR
Sbjct: 380 RKIRIYNETKEVVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHQVRVLPYKTFR 439

Query: 543 FNECVC 560
            N CVC
Sbjct: 440 LNLCVC 445

[190][TOP]
>UniRef100_Q0W8G9 DNA-directed RNA polymerase n=1 Tax=uncultured methanogenic
           archaeon RC-I RepID=Q0W8G9_UNCMA
          Length = 877

 Score =  195 bits (496), Expect = 2e-48
 Identities = 96/187 (51%), Positives = 133/187 (71%), Gaps = 1/187 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     +M++  + +PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 259 DLWELLQYHVTTYMDNAVSGVPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 318

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL +++VG+PLR+A+ +T P  VT  N + +   V RG + +PGAN+V+  DG
Sbjct: 319 TVISPDPNLSINEVGVPLRIAKEMTVPVTVTPFNIEVVREYVRRGSENHPGANYVKRADG 378

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N +++A  + +G  V+R L DGD+VLFNRQPSLHR+SIMSH  +V+PH+TFR
Sbjct: 379 RRLKITDKNCEELADQIEVGWKVDRQLKDGDIVLFNRQPSLHRMSIMSHFVRVMPHKTFR 438

Query: 543 FNECVCA 563
            N  VCA
Sbjct: 439 LNPAVCA 445

[191][TOP]
>UniRef100_Q464Y7 DNA-directed RNA polymerase n=1 Tax=Methanosarcina barkeri str.
           Fusaro RepID=Q464Y7_METBF
          Length = 880

 Score =  194 bits (494), Expect = 3e-48
 Identities = 97/186 (52%), Positives = 129/186 (69%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     F ++  + +PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 264 DLWELLQYHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL +++VG+P+ +AR LT P  VT  N ++L   V  G D +PGAN+V   DG
Sbjct: 324 TVISPDPNLSINEVGVPMPIARILTMPSVVTPRNIEQLKIYVRNGEDIHPGANYVLRPDG 383

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N+  +A+ L  G  VER L DGD+VLFNRQPSLH++SIM+HS KV+P++TFR
Sbjct: 384 RRIKVTNVNKDDLAEKLEFGWTVERQLKDGDIVLFNRQPSLHKMSIMAHSVKVLPNKTFR 443

Query: 543 FNECVC 560
            N  VC
Sbjct: 444 LNPAVC 449

[192][TOP]
>UniRef100_C6A1G0 DNA-directed RNA polymerase n=1 Tax=Thermococcus sibiricus MM 739
           RepID=C6A1G0_THESM
          Length = 905

 Score =  194 bits (493), Expect = 4e-48
 Identities = 93/186 (50%), Positives = 131/186 (70%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     + +++ + +PP    + +PL+ ++QRLKGK GRFR NLSGKRV+FS R
Sbjct: 270 DLWDLLQYHVTTYFDNETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRKNLSGKRVNFSAR 329

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP + +++VG+PL VA  LT PE+VT  N ++L   ++ GP+ YPGAN+V    G
Sbjct: 330 TVISPDPMISINEVGVPLIVAMELTVPEKVTDFNLEKLRKMILNGPEKYPGANYVIDPQG 389

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  L   N + +A  + +G  VERHL++GDVVLFNRQPSLHR+SIM+H  +V+P++TFR
Sbjct: 390 RRIRLMESNLETIADMIDIGWTVERHLMNGDVVLFNRQPSLHRMSIMAHRVRVMPYKTFR 449

Query: 543 FNECVC 560
            N  VC
Sbjct: 450 LNLAVC 455

[193][TOP]
>UniRef100_Q2NEK4 DNA-directed RNA polymerase n=1 Tax=Methanosphaera stadtmanae DSM
           3091 RepID=Q2NEK4_METST
          Length = 873

 Score =  194 bits (492), Expect = 5e-48
 Identities = 89/186 (47%), Positives = 133/186 (71%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     + +++A+ +PP    + +PL+ ++QRLKGK GRFR NL+GKRV+FS R
Sbjct: 260 DLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLAGKRVNFSAR 319

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP L +++VG+P  +A+ +T P  VT+ N +++   +  GPD +PGAN++   DG
Sbjct: 320 TVISPDPTLSINEVGVPEMIAKEVTVPIAVTEWNMEKMKEYINNGPDVHPGANYIIRPDG 379

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K  +    ++ V ++L  G +VERH++DGD+VLFNRQPSLHR+S+M+H  +V+P++TFR
Sbjct: 380 RKIRVYDETKEMVVENLKPGYIVERHIIDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTFR 439

Query: 543 FNECVC 560
            N CVC
Sbjct: 440 LNLCVC 445

[194][TOP]
>UniRef100_A0B558 DNA-directed RNA polymerase n=1 Tax=Methanosaeta thermophila PT
           RepID=A0B558_METTP
          Length = 876

 Score =  194 bits (492), Expect = 5e-48
 Identities = 96/186 (51%), Positives = 131/186 (70%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     F+++  + +PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 260 DLWELLQYHVTTFLDNTVSGVPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 319

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISP PNL +++VG+P+ VA+ LT P  VT  N + +   V+RGPD +PG N+V   DG
Sbjct: 320 TVISPYPNLSINEVGVPIEVAKELTVPIMVTPKNIEVVRKYVMRGPDNHPGVNYVTRADG 379

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N ++VA+ L +G  V+R L DGD+VLFNRQPSLHR+SIM+H  KV+P++TFR
Sbjct: 380 RRVKVTERNCQEVAEQLEVGWKVDRQLADGDIVLFNRQPSLHRMSIMAHRVKVMPYKTFR 439

Query: 543 FNECVC 560
            N  VC
Sbjct: 440 LNPAVC 445

[195][TOP]
>UniRef100_Q8PUR1 DNA-directed RNA polymerase n=1 Tax=Methanosarcina mazei
           RepID=Q8PUR1_METMA
          Length = 880

 Score =  193 bits (491), Expect = 7e-48
 Identities = 96/186 (51%), Positives = 129/186 (69%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     F ++  + +PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 264 DLWELLQYHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPNL +++VG+P+ +A+ LT P  VT  N ++L   V  G D +PGAN+V   DG
Sbjct: 324 TVISPDPNLSINEVGVPMPIAKILTMPAVVTPRNIEQLKVYVRNGEDIHPGANYVFRSDG 383

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N++ +A+ L  G  VER L DGD VLFNRQPSLH++SIM+HS KV+P++TFR
Sbjct: 384 RRIKVTNMNKEDLAEKLEFGWTVERQLKDGDTVLFNRQPSLHKMSIMAHSVKVLPNKTFR 443

Query: 543 FNECVC 560
            N  VC
Sbjct: 444 LNPAVC 449

[196][TOP]
>UniRef100_P09846 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanothermobacter
           thermautotrophicus str. Winter RepID=RPOA1_METTW
          Length = 865

 Score =  192 bits (489), Expect = 1e-47
 Identities = 93/186 (50%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     + +++A+ +PP    + +PL+ ++QRLKGK GRFR NLSGKRV+FS R
Sbjct: 260 DLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSAR 319

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TV+SPDPN+ V++VG+P  +A+ +T P  VT+ N  R+   +  GPD +PGAN+V   DG
Sbjct: 320 TVVSPDPNVSVNEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPGANYVIRPDG 379

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K       +  V ++L  G +VERHL DGD+VLFNRQPSLHR+S+M+H  +V+P++TFR
Sbjct: 380 RKIRAYNETKDVVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTFR 439

Query: 543 FNECVC 560
            N CVC
Sbjct: 440 LNLCVC 445

[197][TOP]
>UniRef100_A9BK83 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK83_9CRYP
          Length = 1323

 Score =  192 bits (487), Expect = 2e-47
 Identities = 93/185 (50%), Positives = 129/185 (69%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRT 185
           D W  LQ+E  +++NS+A NL    S  +  + +  RLKGK GRFRGNLSGKRV+FSGRT
Sbjct: 289 DTWSILQIECGKYLNSEAFNLE---SGKQKFKSLFNRLKGKNGRFRGNLSGKRVNFSGRT 345

Query: 186 VISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGN 365
           VISPDPNL ++ +G+P+ +A  LT+PERV K N +RL   V+RG   +PGANF+     N
Sbjct: 346 VISPDPNLPLNFLGLPIILATKLTFPERVNKFNIERLQRTVLRGATRFPGANFLIDLKNN 405

Query: 366 KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRF 545
           K+ +   ++KK   ++  G  +ERHL + D++LFNRQPSLHRISIM+H  K++  +T + 
Sbjct: 406 KKHIENLSKKKEHLEIKSGYKIERHLKNNDIILFNRQPSLHRISIMAHRTKIISGKTLKI 465

Query: 546 NECVC 560
           NEC+C
Sbjct: 466 NECIC 470

[198][TOP]
>UniRef100_A9A9V0 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C6
           RepID=A9A9V0_METM6
          Length = 889

 Score =  191 bits (486), Expect = 3e-47
 Identities = 97/194 (50%), Positives = 135/194 (69%), Gaps = 9/194 (4%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     + +++A  +PP    + +PLR ++QRLKGK GRFR NL+GKRV+FS R
Sbjct: 267 DLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSAR 326

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF----VE 350
           TVISPDP L +++VGIP  +A+ LT PE+VT +N +R+ A +  G DT+PG N+    V+
Sbjct: 327 TVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIERVRALLRNGADTHPGVNYVIKKVK 386

Query: 351 TDDGNKRFLRY----GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
           T DG +   +      N++   +++  G V+ERHL DGDVVL+NRQPSLHR+SIM+H  K
Sbjct: 387 TKDGKEEEYKIKITDANKEMWVENITDGMVIERHLSDGDVVLYNRQPSLHRMSIMAHKVK 446

Query: 519 VVPHRTFRFNECVC 560
           V+P+RTFR N CVC
Sbjct: 447 VLPYRTFRHNLCVC 460

[199][TOP]
>UniRef100_Q2PYR9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Conidiobolus
           coronatus RepID=Q2PYR9_9FUNG
          Length = 749

 Score =  191 bits (484), Expect = 4e-47
 Identities = 95/179 (53%), Positives = 126/179 (70%), Gaps = 1/179 (0%)
 Frame = +3

Query: 15  EWLQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVI 191
           ++LQ   A +M++D   LP  L  + +P++ I  RLKGK GR RGNL GKRVDFS RTVI
Sbjct: 224 QYLQYHVATYMDNDIAGLPQSLQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVI 283

Query: 192 SPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKR 371
           + DPNL +DQVG+P  +AR LTYPERVT +N +RL  AV  GP+ +PGA +V  D G + 
Sbjct: 284 TGDPNLSIDQVGVPRSIARNLTYPERVTPYNIQRLREAVRNGPNVHPGAKYVIRDTGERI 343

Query: 372 FLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
            LR+  R+     L +G +VERH++D DVV+FNRQPSLH++S+M H  KV+P+ TFR N
Sbjct: 344 DLRH-YRRNAEVPLMVGYIVERHIIDNDVVIFNRQPSLHKMSMMGHLIKVMPYSTFRLN 401

[200][TOP]
>UniRef100_A6VGU9 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C7
           RepID=A6VGU9_METM7
          Length = 889

 Score =  191 bits (484), Expect = 4e-47
 Identities = 97/194 (50%), Positives = 134/194 (69%), Gaps = 9/194 (4%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     + +++A  +PP    + +PLR ++QRLKGK GRFR NL+GKRV+FS R
Sbjct: 267 DLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSAR 326

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF----VE 350
           TVISPDP L +++VGIP  +A+ LT PE+VT +N +R+ A +  G DT+PG N+    V+
Sbjct: 327 TVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIERVRALLRNGADTHPGVNYVIKKVK 386

Query: 351 TDDGNKRFLRY----GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
           T DG +   +      N+    +++  G V+ERHL DGDVVL+NRQPSLHR+SIM+H  K
Sbjct: 387 TKDGKEEEYKIKITDANKDMWVENITDGMVIERHLSDGDVVLYNRQPSLHRMSIMAHKVK 446

Query: 519 VVPHRTFRFNECVC 560
           V+P+RTFR N CVC
Sbjct: 447 VLPYRTFRHNLCVC 460

[201][TOP]
>UniRef100_A6UV50 DNA-directed RNA polymerase n=1 Tax=Methanococcus aeolicus Nankai-3
           RepID=A6UV50_META3
          Length = 888

 Score =  190 bits (482), Expect = 7e-47
 Identities = 96/194 (49%), Positives = 133/194 (68%), Gaps = 9/194 (4%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     + +++A   PP    + +PLR I+QRLKGK GRFR NL+GKRV+FS R
Sbjct: 267 DLWDLLQYHINTYFDNEAPGTPPARHRSGRPLRTIAQRLKGKEGRFRHNLAGKRVNFSAR 326

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF----VE 350
           TVISPDP L +++VGIP ++A+ LT PE+VTK+N  ++   +  G D +PG N+    V+
Sbjct: 327 TVISPDPRLSINEVGIPKQIAKELTIPEKVTKYNIDKIRELIANGADNHPGVNYLIKKVK 386

Query: 351 TDDGNKRFLRYGNRKKV----AKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
           T DG +   +     KV    ++ +  G +VERHL+DGD+VL+NRQPSLHR+SIM+H  K
Sbjct: 387 TRDGKEEEYKIKITDKVKELWSEKVEEGMIVERHLIDGDIVLYNRQPSLHRMSIMAHRVK 446

Query: 519 VVPHRTFRFNECVC 560
           V+P+RTFR N CVC
Sbjct: 447 VLPYRTFRHNLCVC 460

[202][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
           RepID=A8Q5I6_MALGO
          Length = 1607

 Score =  189 bits (479), Expect = 2e-46
 Identities = 97/177 (54%), Positives = 123/177 (69%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D   LP  L S+ +P++ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 103 LQYHTATYMDNDIAGLPQSLQSSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITG 162

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+P  +AR LTYPERVT +NR  L+  V  GP+ YPGA +V  D G +  L
Sbjct: 163 DPNLELDQVGVPKSIARNLTYPERVTPYNRAYLSDLVRNGPNEYPGARYVIRDTGERIDL 222

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           +Y  R  +A  L  G +VERHL DGD VLFNRQPSLH++S+M+H  K++ + TFR N
Sbjct: 223 KYNRRGDIA--LQAGWIVERHLRDGDYVLFNRQPSLHKMSMMAHRVKLMDYSTFRLN 277

[203][TOP]
>UniRef100_Q22M85 DNA-directed RNA polymerase n=1 Tax=Tetrahymena thermophila SB210
           RepID=Q22M85_TETTH
          Length = 1418

 Score =  188 bits (478), Expect = 2e-46
 Identities = 95/188 (50%), Positives = 128/188 (68%), Gaps = 4/188 (2%)
 Frame = +3

Query: 12  WEWLQVEAARFMNSDATNLPPLAST---AKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           W  LQ   A ++N++  NLP         K +R ++QRLKGK GRFRGNLSGKR +F+GR
Sbjct: 258 WFLLQCSHAHYLNAETPNLPFKMDKDFGKKDIRALAQRLKGKKGRFRGNLSGKRSNFTGR 317

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +D V +P  +A+ LT+PE+V   N +RL   VI GP+ YPGA+++   D 
Sbjct: 318 TVISPDPNIPIDNVVVPEYMAKILTFPEQVNAINIERLKKLVINGPEKYPGAHYIIAKDT 377

Query: 363 NKRF-LRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTF 539
             +F L   NR+K A +L +G +VERH+ +G+++LFNRQPSLHRISIM+  A +    T 
Sbjct: 378 EDKFNLSIDNRRKKADELKIGDIVERHIQNGEILLFNRQPSLHRISIMAFKANIQKWNTI 437

Query: 540 RFNECVCA 563
           RFNEC CA
Sbjct: 438 RFNECCCA 445

[204][TOP]
>UniRef100_P41556 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanococcus
           vannielii SB RepID=RPOA1_METVS
          Length = 889

 Score =  188 bits (478), Expect = 2e-46
 Identities = 97/194 (50%), Positives = 133/194 (68%), Gaps = 9/194 (4%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     + +++A  +PP    + +PLR ++QRLKGK GRFR NL+GKRV+FS R
Sbjct: 267 DLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSAR 326

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF----VE 350
           TVISPDP L +++VGIP  +A+ LT PE+VT +N +R+   +  G D +PG N+    V+
Sbjct: 327 TVISPDPRLSINEVGIPELIAKELTVPEKVTPYNIERIRKLIENGSDKHPGVNYVIKKVK 386

Query: 351 TDDGNKRFLRY----GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
           T DG +   +      N+K   +++  G VVERHL DGDVVL+NRQPSLHR+SIM+H  K
Sbjct: 387 TKDGKEEEYKIKITDTNKKMWVENIVDGMVVERHLGDGDVVLYNRQPSLHRMSIMAHKVK 446

Query: 519 VVPHRTFRFNECVC 560
           V+P+RTFR N CVC
Sbjct: 447 VLPYRTFRHNLCVC 460

[205][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
           RepID=O04142_PORYE
          Length = 1685

 Score =  188 bits (477), Expect = 3e-46
 Identities = 93/177 (52%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +MN+D   +P  A  + +PL+ ISQRLKGK GR RGNL GKRVDFS RTVI+P
Sbjct: 222 LQFHVATYMNNDLPGMPRAAQKSGRPLKSISQRLKGKEGRLRGNLMGKRVDFSARTVITP 281

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNLR+DQVG+P  +A+ LT+PE VT +N + +   V  GPD YP A +++ DDG +  L
Sbjct: 282 DPNLRLDQVGVPFSIAKNLTFPETVTAYNIEEMQQLVENGPDEYPDAKYIQRDDGYQVNL 341

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
            Y  R +    L +G  V RH+ +GD ++FNRQPSLH++SIM H  KV+P+ TFR N
Sbjct: 342 AY-VRNRADVQLEIGYKVVRHITNGDFIVFNRQPSLHKMSIMGHRIKVMPYSTFRLN 397

[206][TOP]
>UniRef100_Q18EX6 DNA-directed RNA polymerase n=1 Tax=Haloquadratum walsbyi DSM 16790
           RepID=Q18EX6_HALWD
          Length = 978

 Score =  188 bits (477), Expect = 3e-46
 Identities = 93/186 (50%), Positives = 128/186 (68%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     F++++ +  PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 336 DLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 395

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP L +++VG+P RVAR +T    VT  N  R    V  GP+ +PGAN+V+  DG
Sbjct: 396 TVISPDPTLSLNEVGVPERVAREMTQTMNVTARNVDRAQQYVRNGPEGHPGANYVKRPDG 455

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N +++A+ +  G  V RHL+DGD+V+FNRQPSLHR+SIM+H   V+P++TFR
Sbjct: 456 RRLKVTEKNCEELAEKIDAGWEVNRHLIDGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFR 515

Query: 543 FNECVC 560
            N  VC
Sbjct: 516 LNTVVC 521

[207][TOP]
>UniRef100_C1V769 DNA-directed RNA polymerase n=1 Tax=Halogeometricum borinquense DSM
           11551 RepID=C1V769_9EURY
          Length = 978

 Score =  188 bits (477), Expect = 3e-46
 Identities = 92/186 (49%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     F++++ +  PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 336 DLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 395

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP L +++VG+P RVAR +T    VT+ N ++    V  GP+ +PGAN+V+  DG
Sbjct: 396 TVISPDPTLSLNEVGVPERVAREMTQTMNVTERNLEQAQQYVRNGPEGHPGANYVKRPDG 455

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N +++A+ +  G  V RHL+DGD+V+FNRQPSLHR+SIM+H   V+P++TFR
Sbjct: 456 RRLKVTEKNCEELAEKVQAGWEVNRHLIDGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFR 515

Query: 543 FNECVC 560
            N  VC
Sbjct: 516 LNTVVC 521

[208][TOP]
>UniRef100_B3T842 DNA-directed RNA polymerase (Fragment) n=1 Tax=uncultured marine
           crenarchaeote HF4000_APKG4H17 RepID=B3T842_9ARCH
          Length = 993

 Score =  187 bits (476), Expect = 4e-46
 Identities = 95/182 (52%), Positives = 130/182 (71%), Gaps = 2/182 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ     + +++ + +P     + +PL+ ++QRLKGK GRFRG+LSGKRVDFS RTVISP
Sbjct: 1   LQYHTTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISP 60

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL + +VG+P++VA  LT PE VT+ N ++L   VI GPDT+PG N++   DG K  L
Sbjct: 61  DPNLDLGEVGVPVQVATKLTIPEIVTEWNIEKLKKLVINGPDTFPGVNYIVRPDGVKIRL 120

Query: 378 RY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFNEC 554
            +  +R  +A  L +G +VERHL DGDVVLFNRQPSLH++SIM+H  +V+P +TFR +  
Sbjct: 121 DFVEDRSIIADSLEIGYLVERHLSDGDVVLFNRQPSLHQMSIMAHHVRVLPGKTFRLHPS 180

Query: 555 VC 560
           VC
Sbjct: 181 VC 182

[209][TOP]
>UniRef100_Q6LXI8 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis
           RepID=Q6LXI8_METMP
          Length = 889

 Score =  187 bits (474), Expect = 6e-46
 Identities = 94/194 (48%), Positives = 132/194 (68%), Gaps = 9/194 (4%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     + +++A  +PP    + +PLR ++QRLKGK GRFR NL+GKRV+FS R
Sbjct: 267 DLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSAR 326

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF----VE 350
           TVISPDP L +++VGIP  +A+ LT PE+VT +N +++ A +  G D +PG N+    V 
Sbjct: 327 TVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVR 386

Query: 351 TDDGNKRFLRY----GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
           T DG +   +      N+    +++  G V+ERHL DGD+VL+NRQPSLHR+SIM+H  K
Sbjct: 387 TKDGKEEEYKIKITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVK 446

Query: 519 VVPHRTFRFNECVC 560
           V+P+RTFR N CVC
Sbjct: 447 VLPYRTFRHNLCVC 460

[210][TOP]
>UniRef100_A5ULN6 DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter smithii ATCC
           35061 RepID=A5ULN6_METS3
          Length = 894

 Score =  187 bits (474), Expect = 6e-46
 Identities = 88/186 (47%), Positives = 127/186 (68%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     + +++A+ +PP    + +PL+ ++QRLKGK GRFR NLSGKRV+FS R
Sbjct: 264 DLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSAR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +++VG+P  +A+ +T P  V   N   +   +  GP+ +PGAN+V   DG
Sbjct: 324 TVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDEMRTYIENGPNVHPGANYVIRTDG 383

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K  +    +  + + L  G ++ERHL DGD+VLFNRQPSLHR+S+M+H  +V+P++TFR
Sbjct: 384 RKIRVYDETKDMILEKLEPGYIIERHLKDGDMVLFNRQPSLHRMSMMAHEVRVLPYKTFR 443

Query: 543 FNECVC 560
            N CVC
Sbjct: 444 LNLCVC 449

[211][TOP]
>UniRef100_B9AEP6 DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter smithii DSM
           2375 RepID=B9AEP6_METSM
          Length = 894

 Score =  187 bits (474), Expect = 6e-46
 Identities = 88/186 (47%), Positives = 127/186 (68%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     + +++A+ +PP    + +PL+ ++QRLKGK GRFR NLSGKRV+FS R
Sbjct: 264 DLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSAR 323

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDPN+ +++VG+P  +A+ +T P  V   N   +   +  GP+ +PGAN+V   DG
Sbjct: 324 TVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDEMRTYIENGPNVHPGANYVIRTDG 383

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            K  +    +  + + L  G ++ERHL DGD+VLFNRQPSLHR+S+M+H  +V+P++TFR
Sbjct: 384 RKIRVYDETKDMILEKLEPGYIIERHLKDGDMVLFNRQPSLHRMSMMAHEVRVLPYKTFR 443

Query: 543 FNECVC 560
            N CVC
Sbjct: 444 LNLCVC 449

[212][TOP]
>UniRef100_B5IH61 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aciduliprofundum
           boonei T469 RepID=B5IH61_9EURY
          Length = 661

 Score =  187 bits (474), Expect = 6e-46
 Identities = 99/191 (51%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     + ++  + +PP    + +PL+ + QRLKGK GRFR NLSGKRV+FS R
Sbjct: 211 DLWELLQYHVTTYFDNQTSGIPPARHRSGRPLKTLVQRLKGKEGRFRSNLSGKRVNFSAR 270

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGP----DTY-PGANFV 347
           TVISP+P L +++VG+P   AR LT P  VT++N +++   V RG     D Y PGAN+V
Sbjct: 271 TVISPEPFLSINEVGVPEAAARELTVPITVTEYNIEKMKEIVRRGSNPKGDKYLPGANYV 330

Query: 348 ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVP 527
              DG +  +   N + V+K L +G VVERHL+DGDVVLFNRQPSLHR+S+M H  KV+P
Sbjct: 331 IRPDGRRIKITDRNAEDVSKKLDIGWVVERHLIDGDVVLFNRQPSLHRMSMMGHLVKVMP 390

Query: 528 HRTFRFNECVC 560
           +RTFRFN  VC
Sbjct: 391 NRTFRFNLAVC 401

[213][TOP]
>UniRef100_B5IGJ6 DNA-directed RNA polymerase n=1 Tax=Aciduliprofundum boonei T469
           RepID=B5IGJ6_9EURY
          Length = 895

 Score =  187 bits (474), Expect = 6e-46
 Identities = 99/191 (51%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     + ++  + +PP    + +PL+ + QRLKGK GRFR NLSGKRV+FS R
Sbjct: 268 DLWELLQYHVTTYFDNQTSGIPPARHRSGRPLKTLVQRLKGKEGRFRSNLSGKRVNFSAR 327

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGP----DTY-PGANFV 347
           TVISP+P L +++VG+P   AR LT P  VT++N +++   V RG     D Y PGAN+V
Sbjct: 328 TVISPEPFLSINEVGVPEAAARELTVPITVTEYNIEKMKEIVRRGSNPKGDKYLPGANYV 387

Query: 348 ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVP 527
              DG +  +   N + V+K L +G VVERHL+DGDVVLFNRQPSLHR+S+M H  KV+P
Sbjct: 388 IRPDGRRIKITDRNAEDVSKKLDIGWVVERHLIDGDVVLFNRQPSLHRMSMMGHLVKVMP 447

Query: 528 HRTFRFNECVC 560
           +RTFRFN  VC
Sbjct: 448 NRTFRFNLAVC 458

[214][TOP]
>UniRef100_A8MAA2 DNA-directed RNA polymerase n=1 Tax=Caldivirga maquilingensis
           IC-167 RepID=A8MAA2_CALMQ
          Length = 889

 Score =  186 bits (472), Expect = 1e-45
 Identities = 94/188 (50%), Positives = 134/188 (71%), Gaps = 2/188 (1%)
 Frame = +3

Query: 3   MDGWEWLQVEAARFMNSDATN-LPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSG 179
           +D W+ LQ   A +++++    +     + +PL+GI+QRLKGK GRFRG+LSGKRV+FS 
Sbjct: 276 LDLWDSLQANVATYIDNELPGGIQARHRSKRPLKGIAQRLKGKEGRFRGSLSGKRVEFSA 335

Query: 180 RTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDD 359
           RTVISPDPNL +++VG+P+ +A+ LT  E VT+ N   +   V+ GP+T+PGAN V T D
Sbjct: 336 RTVISPDPNLSINEVGVPIDIAKELTVVEPVTEWNIDLMRMLVVNGPETWPGANRVITPD 395

Query: 360 GNKRFLRY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRT 536
           G K  L+   +R ++A+ +  G ++ERHL+DGD VLFNRQPSLH++S+M H  KV+P RT
Sbjct: 396 GKKIELKVRRDRSELAQQIQPGWMIERHLMDGDYVLFNRQPSLHKMSMMCHIVKVLPGRT 455

Query: 537 FRFNECVC 560
           FR +  VC
Sbjct: 456 FRLHLAVC 463

[215][TOP]
>UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa
           RepID=Q2PYR6_9FUNG
          Length = 1013

 Score =  186 bits (471), Expect = 1e-45
 Identities = 94/177 (53%), Positives = 124/177 (70%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A FMN++A+ +P  L  + +P++ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 228 LQFHTAAFMNNEASGMPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 287

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPN+ +DQVG+P  +AR LTYPE VT +N  RL   V  G D YPGA FV  D+G +  L
Sbjct: 288 DPNISIDQVGVPRSIARNLTYPETVTPYNIDRLQEYVRNGRDAYPGAKFVVRDNGEQINL 347

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           +Y N+++    L +G  VER+L+D DV++FNRQPSLH++S+M H  KV+P+ TFR N
Sbjct: 348 QY-NKQRGDFPLQIGYRVERNLIDDDVIIFNRQPSLHKMSMMGHRVKVMPYSTFRLN 403

[216][TOP]
>UniRef100_Q5UZR4 DNA-directed RNA polymerase n=1 Tax=Haloarcula marismortui
           RepID=Q5UZR4_HALMA
          Length = 969

 Score =  186 bits (471), Expect = 1e-45
 Identities = 91/186 (48%), Positives = 128/186 (68%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     FM+++ +  PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 332 DLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 391

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP L +++VG+P RVA+ +T    VT+ N +     V  GP+ +PGAN+V+  DG
Sbjct: 392 TVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRYVSNGPEAHPGANYVKRPDG 451

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N +++A+ +     V RHLVDGD+++FNRQPSLHR+SIM+H   V+P++TFR
Sbjct: 452 RRLKVTEKNCEELAEKVEAEWEVSRHLVDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFR 511

Query: 543 FNECVC 560
            N  VC
Sbjct: 512 LNTTVC 517

[217][TOP]
>UniRef100_A4FWF6 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C5
           RepID=A4FWF6_METM5
          Length = 889

 Score =  186 bits (471), Expect = 1e-45
 Identities = 94/194 (48%), Positives = 132/194 (68%), Gaps = 9/194 (4%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     + +++A  +PP    + +PLR ++QRLKGK GRFR NL+GKRV+FS R
Sbjct: 267 DLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSAR 326

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANF----VE 350
           TVISPDP L +++VGIP  +A+ LT PE+VT +N +++   +  G DT+PG N+    V 
Sbjct: 327 TVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRTLLRNGADTHPGVNYVVKKVR 386

Query: 351 TDDGNKRFLRY----GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
           T DG +   +      N+    +++  G VVERHL +GD+VL+NRQPSLHR+SIM+H  K
Sbjct: 387 TKDGKEEEYKIKITDANKDMWVENITDGMVVERHLSNGDIVLYNRQPSLHRMSIMAHKVK 446

Query: 519 VVPHRTFRFNECVC 560
           V+P+RTFR N CVC
Sbjct: 447 VLPYRTFRHNLCVC 460

[218][TOP]
>UniRef100_Q2PYS8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rozella allomycis
           RepID=Q2PYS8_9FUNG
          Length = 809

 Score =  185 bits (470), Expect = 2e-45
 Identities = 97/177 (54%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M +    LP  +  + +PL+ IS RLKGK GR RGNL GKRVDFS RTVI+P
Sbjct: 30  LQFHVATYMENSIPGLPKAIQKSGRPLKSISARLKGKEGRLRGNLMGKRVDFSARTVITP 89

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+P  +A+TLTYPE VT +N + L   V  GP  +PGA +V  DDGN+  L
Sbjct: 90  DPNLSLDQVGVPRTIAKTLTYPEIVTPYNIEYLQKLVNNGPTEHPGARYVVRDDGNRIDL 149

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           R+    K    L  G +VERH+ DGDVVLFNRQPSLH++S+M H  KV+P+ TFR N
Sbjct: 150 RF----KTDVVLQPGYLVERHINDGDVVLFNRQPSLHKMSMMGHRIKVMPYSTFRLN 202

[219][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC
           42720 RepID=C4Y5N4_CLAL4
          Length = 1402

 Score =  185 bits (470), Expect = 2e-45
 Identities = 100/179 (55%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D    P  L  T +P++ I  RLKGK GR RGNL GKRVDFS RTVIS 
Sbjct: 255 LQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISG 314

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+PL +ARTLTYPE VT +N  RL   V  GP+ +PGA +V  D G++  L
Sbjct: 315 DPNLDLDQVGVPLSIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDL 374

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY  R   A D+ L  G  VERHL+D D VLFNRQPSLH++S+M+H  KV+P+ TFR N
Sbjct: 375 RYNKR---AGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLN 430

[220][TOP]
>UniRef100_B9Z9B0 DNA-directed RNA polymerase n=1 Tax=Natrialba magadii ATCC 43099
           RepID=B9Z9B0_NATMA
          Length = 976

 Score =  185 bits (470), Expect = 2e-45
 Identities = 92/186 (49%), Positives = 126/186 (67%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     FM+++ +  PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 335 DLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 394

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP L +++VG+P RVA+ +T    VT  N +     V  GP+ +PGAN+V   DG
Sbjct: 395 TVISPDPTLSLNEVGVPDRVAKEMTQTMNVTDRNVEEARRYVSNGPEGHPGANYVRRPDG 454

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N + +A+ +  G  V RH+VDGD+V+FNRQPSLHR+SIM+H   V+P++TFR
Sbjct: 455 RRLKVTEKNCEALAEKVDAGWEVNRHMVDGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFR 514

Query: 543 FNECVC 560
            N  VC
Sbjct: 515 LNTVVC 520

[221][TOP]
>UniRef100_C4QF52 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
           RepID=C4QF52_SCHMA
          Length = 1342

 Score =  185 bits (469), Expect = 2e-45
 Identities = 103/196 (52%), Positives = 125/196 (63%), Gaps = 16/196 (8%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPPLASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISPD 200
           L  E AR +NS  + LPP+    K +RG+ QRL GK GRFRG+L GKR +F+ RTVISPD
Sbjct: 309 LHAEFARLINSQQSGLPPVQDH-KFMRGLLQRLAGKHGRFRGSLLGKRTNFTARTVISPD 367

Query: 201 PNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVE---------- 350
           PN+R+D+V IP+  A+ LTYPERVT  N   L + V+ GP+ YPGA FV           
Sbjct: 368 PNMRIDEVCIPVHCAKLLTYPERVTDFNLNFLRSLVLNGPNNYPGAMFVSYKLRGERKRQ 427

Query: 351 -----TDDGNKRFLRYGN-RKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHS 512
                  D  KRFL     R+ VAK L  G +VERHL+D D+VLFNRQPSLHR+SI +  
Sbjct: 428 AEASGNSDVVKRFLASERAREDVAKYLQSGDIVERHLLDDDIVLFNRQPSLHRVSIQAFR 487

Query: 513 AKVVPHRTFRFNECVC 560
           A V P RTFRFN C C
Sbjct: 488 AVVKPFRTFRFNPCCC 503

[222][TOP]
>UniRef100_A0RXW9 DNA-directed RNA polymerase n=1 Tax=Cenarchaeum symbiosum
           RepID=A0RXW9_CENSY
          Length = 1260

 Score =  185 bits (469), Expect = 2e-45
 Identities = 92/182 (50%), Positives = 128/182 (70%), Gaps = 2/182 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ  A  + +++ + +P     + +PL+ ++QRLKGK GRFRG+LSGKRVDFS RTVISP
Sbjct: 272 LQYHATTYFDNEISGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISP 331

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL + +VG+P  VA  LT PE VT+ N  R+   V+ GPD YPG N++   DG K  L
Sbjct: 332 DPNLDLSEVGVPESVAMKLTIPEIVTEWNIARMKELVVNGPDHYPGVNYIVRPDGVKIRL 391

Query: 378 RY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFNEC 554
            +  +R  +A  L +G ++ERHL+DGD+V+FNRQPSLH++SIM+H  +V+P +TFR +  
Sbjct: 392 DFVEDRSTIADTLEMGYLIERHLLDGDIVMFNRQPSLHQMSIMAHHVRVLPGKTFRLHPS 451

Query: 555 VC 560
           VC
Sbjct: 452 VC 453

[223][TOP]
>UniRef100_Q5S1Y0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Boletellus
           projectellus RepID=Q5S1Y0_9HOMO
          Length = 997

 Score =  184 bits (468), Expect = 3e-45
 Identities = 95/177 (53%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D   +P  L  + +P++ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 212 LQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITG 271

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +D+VG+P  +A  LTYPERVT +N   L   V  GP TYPGA +V  D G +  L
Sbjct: 272 DPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPSTYPGARYVVRDTGERIDL 331

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY   K+    L  G +VERHL DGD VLFNRQPSLH++S+MSH  K++P+ TFR N
Sbjct: 332 RY--NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLN 386

[224][TOP]
>UniRef100_C7NYI6 DNA-directed RNA polymerase subunit A' n=1 Tax=Halomicrobium
           mukohataei DSM 12286 RepID=C7NYI6_HALMD
          Length = 972

 Score =  184 bits (468), Expect = 3e-45
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     FM+++ +  PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 336 DLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 395

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP L +++VG+P RVA+ +T    V + N       V  GP+ +PGAN+V+  DG
Sbjct: 396 TVISPDPTLSLNEVGVPDRVAKEMTQTMNVNERNLDNARRYVANGPEAHPGANYVKRPDG 455

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N +++A+ +  G  V RH++DGD+++FNRQPSLHR+SIM+H   V+P++TFR
Sbjct: 456 RRLKVTEKNCEELAEKVEPGWEVSRHMIDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFR 515

Query: 543 FNECVC 560
            N  VC
Sbjct: 516 LNTTVC 521

[225][TOP]
>UniRef100_UPI0001B119CD RNA polymerase alpha subunit n=1 Tax=Methanocaldococcus vulcanius
           M7 RepID=UPI0001B119CD
          Length = 1234

 Score =  184 bits (467), Expect = 4e-45
 Identities = 93/194 (47%), Positives = 134/194 (69%), Gaps = 9/194 (4%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W  LQ     + +++A  +PP    + +PL+ ++QRLKGK GRFR NL+GKRV+FS R
Sbjct: 160 DLWNLLQYHINTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSR 219

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV----- 347
           TVISPDP L V++VG+P  +A+ LT PE+VTK+N +R+   +  G + +PG N+V     
Sbjct: 220 TVISPDPCLSVNEVGVPEIIAKELTVPEKVTKYNIERIRKLLRNGSEKHPGVNYVIRKMI 279

Query: 348 ---ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
               T+   K  +  GN++  A+++  G +VERHL+DGD+VL+NRQPSLHR+SIM+H  +
Sbjct: 280 GRDGTEQEYKVKVTEGNKEFWAENIKEGDIVERHLMDGDIVLYNRQPSLHRMSIMAHRVR 339

Query: 519 VVPHRTFRFNECVC 560
           V+P+RTFR N CVC
Sbjct: 340 VLPYRTFRHNLCVC 353

[226][TOP]
>UniRef100_C9RDK8 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanocaldococcus
           vulcanius M7 RepID=C9RDK8_9EURY
          Length = 1343

 Score =  184 bits (467), Expect = 4e-45
 Identities = 93/194 (47%), Positives = 134/194 (69%), Gaps = 9/194 (4%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W  LQ     + +++A  +PP    + +PL+ ++QRLKGK GRFR NL+GKRV+FS R
Sbjct: 269 DLWNLLQYHINTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSR 328

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFV----- 347
           TVISPDP L V++VG+P  +A+ LT PE+VTK+N +R+   +  G + +PG N+V     
Sbjct: 329 TVISPDPCLSVNEVGVPEIIAKELTVPEKVTKYNIERIRKLLRNGSEKHPGVNYVIRKMI 388

Query: 348 ---ETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
               T+   K  +  GN++  A+++  G +VERHL+DGD+VL+NRQPSLHR+SIM+H  +
Sbjct: 389 GRDGTEQEYKVKVTEGNKEFWAENIKEGDIVERHLMDGDIVLYNRQPSLHRMSIMAHRVR 448

Query: 519 VVPHRTFRFNECVC 560
           V+P+RTFR N CVC
Sbjct: 449 VLPYRTFRHNLCVC 462

[227][TOP]
>UniRef100_B3A009 DNA-directed RNA polymerase n=1 Tax=Haloarcula japonica
           RepID=B3A009_HALJP
          Length = 969

 Score =  184 bits (467), Expect = 4e-45
 Identities = 91/186 (48%), Positives = 127/186 (68%), Gaps = 1/186 (0%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D WE LQ     FM+++ +  PP    + +PL+ +SQRLKGK GRFRG+LSGKRV+FS R
Sbjct: 332 DLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSAR 391

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP L +++VG+P RVA+ +T    VT  N +     V  GP+ +PGAN+V+  DG
Sbjct: 392 TVISPDPTLSLNEVGVPDRVAKEMTQTMNVTDRNLEEARRYVSNGPEAHPGANYVKRPDG 451

Query: 363 NKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFR 542
            +  +   N +++A+ +     V RHLVDGD+++FNRQPSLHR+SIM+H   V+P++TFR
Sbjct: 452 RRLKVTEKNCEELAEKVEPEWEVSRHLVDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFR 511

Query: 543 FNECVC 560
            N  VC
Sbjct: 512 LNTTVC 517

[228][TOP]
>UniRef100_A8X1M6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae
           RepID=A8X1M6_CAEBR
          Length = 1435

 Score =  184 bits (466), Expect = 5e-45
 Identities = 88/135 (65%), Positives = 108/135 (80%), Gaps = 1/135 (0%)
 Frame = +3

Query: 159 KRVDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGA 338
           KRVDFSGRTVISPDPNLR+DQVG+P+ VA TLT+PE V   N  ++   ++ G D +PGA
Sbjct: 372 KRVDFSGRTVISPDPNLRIDQVGVPVHVAMTLTFPEIVNASNIDKMRKLIVNGSDVHPGA 431

Query: 339 NF-VETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSA 515
           N+ V+   G+K+ L+YGNR+++AK+L LG  VERHL D DVVLFNRQPSLH+ISIMSH A
Sbjct: 432 NYLVDKKTGHKKLLKYGNREELAKNLRLGDTVERHLDDNDVVLFNRQPSLHKISIMSHRA 491

Query: 516 KVVPHRTFRFNECVC 560
           KV+P RTFRFNEC C
Sbjct: 492 KVMPGRTFRFNECAC 506

[229][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
           RepID=Q6FQS9_CANGA
          Length = 1715

 Score =  184 bits (466), Expect = 5e-45
 Identities = 96/177 (54%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D    P  L  + +P++ I  RLKGK GR RGNL GKRVDFS RTVIS 
Sbjct: 296 LQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISG 355

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+P  +ARTLTYPE VT +N  RL+  V  GP+ +PGA +V  D+G++  L
Sbjct: 356 DPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLSQLVRNGPNEHPGAKYVIRDNGDRIDL 415

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY  R    + L  G  VERH++D D VLFNRQPSLH++S+M+H  KVVP+ TFR N
Sbjct: 416 RYSKRSGDVQ-LQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRLN 471

[230][TOP]
>UniRef100_Q2PYR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mortierella
           verticillata RepID=Q2PYR5_9FUNG
          Length = 1016

 Score =  184 bits (466), Expect = 5e-45
 Identities = 95/177 (53%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D    PP A    +PL+ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 225 LQYHVATYMDNDIAGQPPAAHKNGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 284

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +D+VG+P  +ARTLTYPE VT +N  +L   V  GP  +PGA +V  DDG +  L
Sbjct: 285 DPNLSIDEVGVPRSIARTLTYPELVTPYNIDKLQKLVRNGPTEHPGAVYVIRDDGQRIDL 344

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           R+  R+     L LG  VERH+ DGDVV+FNRQPSLH++S+M H  +V+P+ TFR N
Sbjct: 345 RWNKRE---VPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLN 398

[231][TOP]
>UniRef100_Q2PYR4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhopalomyces elegans
           RepID=Q2PYR4_9FUNG
          Length = 792

 Score =  184 bits (466), Expect = 5e-45
 Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D    P  L  + +PL+ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 227 LQFHVATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 286

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +D+VG+PL +A+ LT+PE VT +N  +L   V  GP+ +PGA +V  D+G +  L
Sbjct: 287 DPNLSIDEVGVPLLIAKNLTFPEIVTPYNVGKLQELVANGPNAHPGARYVYRDNGERIDL 346

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           R+  R     D+PL  G  VERHLVDGD+V+FNRQPSLH++S+M H  +V+PH TFR N
Sbjct: 347 RFNRR---GGDIPLQYGWRVERHLVDGDLVIFNRQPSLHKMSMMGHRVRVMPHHTFRLN 402

[232][TOP]
>UniRef100_Q2PYR3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhizophlyctis rosea
           RepID=Q2PYR3_9FUNG
          Length = 1006

 Score =  184 bits (466), Expect = 5e-45
 Identities = 94/177 (53%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPPLA-STAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A FM++D       A  + +PL+ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 222 LQYHVATFMDNDGAGANAAAHKSGRPLKTIRSRLKGKEGRLRGNLMGKRVDFSARTVITG 281

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+P  +AR LT+PE VTK N ++LAAAV  GP  +PGA +V   +G++  L
Sbjct: 282 DPNLSIDQVGVPRSIARNLTFPEVVTKCNFEKLAAAVANGPTAHPGAKYVINSNGDRTDL 341

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY     V   L +G  VERHL+D D+++FNRQPSLH++S+M H  KV+P+ TFR N
Sbjct: 342 RYAREDSVI--LKIGDKVERHLMDDDLIIFNRQPSLHKMSMMGHRVKVMPYSTFRLN 396

[233][TOP]
>UniRef100_Q0PNI5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cantharellus
           cibarius RepID=Q0PNI5_CANCI
          Length = 417

 Score =  184 bits (466), Expect = 5e-45
 Identities = 94/177 (53%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D   +P  +  + +P++ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 227 LQFHVATYMDNDIAGIPQAMQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDFSSRTVITG 286

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPN+ +D+VG+P  VA TLTYPERVT +N ++L   V  GP  YPGA +V  D G +  L
Sbjct: 287 DPNIMLDEVGVPKSVAMTLTYPERVTPYNIEQLQELVRNGPREYPGARYVVRDTGERIDL 346

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY   K+    L  G +VERHL DGD VLFNRQPSLH++S+MSH  K++P+ TFR N
Sbjct: 347 RY--NKRTDAFLQYGWIVERHLRDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLN 401

[234][TOP]
>UniRef100_B3T8B1 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
           HF4000_APKG5C13 RepID=B3T8B1_9ARCH
          Length = 1268

 Score =  184 bits (466), Expect = 5e-45
 Identities = 93/182 (51%), Positives = 129/182 (70%), Gaps = 2/182 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ     + +++ + +P     + +PL+ ++QRLKGK GRFRG+LSGKRVDFS RTVISP
Sbjct: 272 LQYHCTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISP 331

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL + +VG+P+ +A  LT PE VT+ N ++L   VI GP+T+PG N++   DG K  L
Sbjct: 332 DPNLDLGEVGVPMSIATKLTIPEIVTEWNIEKLKKLVINGPNTFPGVNYIVRPDGVKIRL 391

Query: 378 RY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFNEC 554
            +  +  +VA  L +G +VERHL DGDVVLFNRQPSLH++SIM+H  +V+P +TFR +  
Sbjct: 392 DFVEDTLQVADQLEIGYLVERHLSDGDVVLFNRQPSLHQMSIMAHHVRVLPGKTFRLHPS 451

Query: 555 VC 560
           VC
Sbjct: 452 VC 453

[235][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
           Tax=Pichia guilliermondii RepID=RPB1_PICGU
          Length = 1579

 Score =  184 bits (466), Expect = 5e-45
 Identities = 99/179 (55%), Positives = 122/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D    P  L  T +P++ I  RLKGK GR RGNL GKRVDFS RTVIS 
Sbjct: 300 LQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISG 359

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+P+ +ARTLTYPE VT +N  RL   V  GP+ +PGA +V  D G++  L
Sbjct: 360 DPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDL 419

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY  R   A D+ L  G  VERHL+D D VLFNRQPSLH++S+M H  KV+P+ TFR N
Sbjct: 420 RYNKR---AGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLN 475

[236][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
           subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
           RepID=UPI0000F24379
          Length = 1739

 Score =  183 bits (465), Expect = 7e-45
 Identities = 98/179 (54%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D    P  L  T +P++ I  RLKGK GR RGNL GKRVDFS RTVIS 
Sbjct: 296 LQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISG 355

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+P+ +ARTL+YPE VT +N  RL   V  GP+ +PGA +V  D G++  L
Sbjct: 356 DPNLDLDQVGVPISIARTLSYPEVVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDL 415

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY  R   A D+ L  G  VERHL+D D VLFNRQPSLH++S+M+H  KV+P+ TFR N
Sbjct: 416 RYNKR---AGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLN 471

[237][TOP]
>UniRef100_Q2PYS2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dimargaris
           bacillispora RepID=Q2PYS2_9FUNG
          Length = 753

 Score =  183 bits (465), Expect = 7e-45
 Identities = 93/179 (51%), Positives = 125/179 (69%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           L+   A +MN+D + +P  L  + +PL+ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 230 LEYHIATYMNNDVSGIPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 289

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +D+VG+P  +AR LTYPE VT +N  +L  AV  GP  +PGA ++  D+G++  L
Sbjct: 290 DPNLSIDEVGVPRSIARNLTYPELVTPYNIHQLQQAVRNGPTQHPGAKYIVRDNGDRIDL 349

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY    K+  ++PL  G  VERHLV GD+V+FNRQPSLH++S+M H  +V+P+ TFR N
Sbjct: 350 RY---NKLGGEIPLQYGWRVERHLVSGDLVIFNRQPSLHKMSMMGHKVRVMPYSTFRLN 405

[238][TOP]
>UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis
           RepID=Q2PYR1_9FUNG
          Length = 1022

 Score =  183 bits (465), Expect = 7e-45
 Identities = 94/179 (52%), Positives = 122/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ     FMN++ + LP  L  + +P+R I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 238 LQFHVVTFMNNEISGLPQALQKSGRPIRSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 297

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPN+ +D+VG+P  +AR LTYPE VT +N ++L   V  GP  +PGA +V  D G +  L
Sbjct: 298 DPNISIDEVGVPRSIARNLTYPEVVTPYNIEKLQELVRNGPTEHPGAKYVIRDTGERIDL 357

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY  R     D+PL  G  VERH++DGDVV+FNRQPSLH++S+M H  +V+P+ TFR N
Sbjct: 358 RYNKR---GGDIPLAIGYRVERHIMDGDVVIFNRQPSLHKMSMMGHRVRVLPYSTFRLN 413

[239][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
           RepID=A3GID7_PICST
          Length = 1739

 Score =  183 bits (465), Expect = 7e-45
 Identities = 98/179 (54%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D    P  L  T +P++ I  RLKGK GR RGNL GKRVDFS RTVIS 
Sbjct: 296 LQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISG 355

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+P+ +ARTL+YPE VT +N  RL   V  GP+ +PGA +V  D G++  L
Sbjct: 356 DPNLDLDQVGVPISIARTLSYPEVVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDL 415

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY  R   A D+ L  G  VERHL+D D VLFNRQPSLH++S+M+H  KV+P+ TFR N
Sbjct: 416 RYNKR---AGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLN 471

[240][TOP]
>UniRef100_A1YIB4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Furculomyces
           boomerangus RepID=A1YIB4_9FUNG
          Length = 1024

 Score =  183 bits (465), Expect = 7e-45
 Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A FMN++ + LP  L  + +P++ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 235 LQFHVATFMNNEISGLPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 294

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPN+ +DQVG+P  +AR +TYPE VT +N ++L   V  GP+ +PGA +V  D G +  L
Sbjct: 295 DPNIDIDQVGVPRSIARNMTYPEVVTPYNIEKLQEMVQNGPNEHPGAKYVIRDSGERIDL 354

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY  R     D+PL  G  VERH++D DVV+FNRQPSLH++S+M H  KV+P+ TFR N
Sbjct: 355 RYSKR---GGDIPLRIGYRVERHMLDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLN 410

[241][TOP]
>UniRef100_A8TEB8 DNA-directed RNA polymerase n=1 Tax=Methanococcus voltae A3
           RepID=A8TEB8_METVO
          Length = 888

 Score =  183 bits (465), Expect = 7e-45
 Identities = 95/194 (48%), Positives = 130/194 (67%), Gaps = 9/194 (4%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           D W+ LQ     + +++A  +PP    + +PLR ++QRLKGK GRFR NL+GKRV+FS R
Sbjct: 267 DLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSAR 326

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISPDP L +++VGIP  +A+ LT PE+VT HN   +   +  G + +PG N+V     
Sbjct: 327 TVISPDPRLSINEVGIPELIAKELTVPEKVTAHNIDHIKELLKNGSEIHPGVNYVIKTIK 386

Query: 363 NKR------FLRYGNRKK--VAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAK 518
           NK        +R  ++ K   A+++  G  VERHL+DGDVVL+NRQPSLHR+SIM+H  K
Sbjct: 387 NKEGKQENFSIRVSDKNKDHWAENIEEGMSVERHLIDGDVVLYNRQPSLHRMSIMAHKVK 446

Query: 519 VVPHRTFRFNECVC 560
           V+P+RTFR N CVC
Sbjct: 447 VLPYRTFRHNLCVC 460

[242][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
           CBS767 RepID=UPI00003BD271
          Length = 1749

 Score =  183 bits (464), Expect = 9e-45
 Identities = 98/179 (54%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D    P  L  T +P++ I  RLKGK GR RGNL GKRVDFS RTVIS 
Sbjct: 301 LQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISG 360

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+P+ +ARTL+YPE VT +N  RL   V  GP+ +PGA +V  D G++  L
Sbjct: 361 DPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDL 420

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY  R   A D+ L  G  VERHL+D D VLFNRQPSLH++S+M+H  KV+P+ TFR N
Sbjct: 421 RYNKR---AGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLN 476

[243][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
           aggregatum RepID=Q2PYS6_9FUNG
          Length = 1016

 Score =  183 bits (464), Expect = 9e-45
 Identities = 96/179 (53%), Positives = 122/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +MN+D + +P     + +PL+ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 233 LQYHVATYMNNDISGIPKAQQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 292

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+P  +AR LT+PE VT +N  RL   V  GP  +PGA +V  D+G +  L
Sbjct: 293 DPNLSIDQVGVPRSIARNLTFPENVTPYNIARLQKYVQNGPMEHPGAKYVIRDNGERIDL 352

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY    KV +D+ L  G  VERHL+D DVV+FNRQPSLH++S+M H  KV+P+ TFR N
Sbjct: 353 RY---SKVGRDIHLQPGYKVERHLMDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLN 408

[244][TOP]
>UniRef100_Q2PYQ1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Olpidium brassicae
           RepID=Q2PYQ1_9FUNG
          Length = 585

 Score =  183 bits (464), Expect = 9e-45
 Identities = 95/179 (53%), Positives = 122/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +MN++    P  L  + +PL+ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 61  LQFHVATYMNNELAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 120

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +D+VG+P  +AR LT+PE VT +N  R+   V  GP+ +PGA FV  D G +  L
Sbjct: 121 DPNLSIDEVGVPRSIARNLTFPEIVTPYNIDRMQELVRNGPNEHPGAKFVIRDTGERIDL 180

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY  R   + D+PL  G  VERHLVDGDV++FNRQPSLH++S+M H  +V+P+ TFR N
Sbjct: 181 RYHKR---SGDIPLQVGWKVERHLVDGDVIIFNRQPSLHKMSMMGHKVRVMPYSTFRLN 236

[245][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
           RepID=B5RSM9_DEBHA
          Length = 1749

 Score =  183 bits (464), Expect = 9e-45
 Identities = 98/179 (54%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D    P  L  T +P++ I  RLKGK GR RGNL GKRVDFS RTVIS 
Sbjct: 301 LQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISG 360

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL +DQVG+P+ +ARTL+YPE VT +N  RL   V  GP+ +PGA +V  D G++  L
Sbjct: 361 DPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDL 420

Query: 378 RYGNRKKVAKDLPL--GAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY  R   A D+ L  G  VERHL+D D VLFNRQPSLH++S+M+H  KV+P+ TFR N
Sbjct: 421 RYNKR---AGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLN 476

[246][TOP]
>UniRef100_A1YIB0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hydnum repandum
           RepID=A1YIB0_9HOMO
          Length = 1010

 Score =  183 bits (464), Expect = 9e-45
 Identities = 93/177 (52%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D + +P  +  + +P++ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 226 LQFHVATYMDNDISGIPQAMQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDFSSRTVITG 285

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPN+ +D+VG+P  +A TLTYPERVT +N  +L   V  GP  YPGA +V  D G +  L
Sbjct: 286 DPNIMLDEVGVPKSIAMTLTYPERVTPYNIAQLQELVRNGPREYPGARYVVRDTGERIDL 345

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY   K+    L  G +VERHL DGD VLFNRQPSLH++S+MSH  K++P+ TFR N
Sbjct: 346 RY--NKRADAFLQYGWIVERHLRDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLN 400

[247][TOP]
>UniRef100_B3T303 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
           HF4000_ANIW93I24 RepID=B3T303_9ARCH
          Length = 1264

 Score =  183 bits (464), Expect = 9e-45
 Identities = 93/182 (51%), Positives = 128/182 (70%), Gaps = 2/182 (1%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ     + +++ + +P     + +PL+ ++QRLKGK GRFRG+LSGKRVDFS RTVISP
Sbjct: 272 LQYHCTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISP 331

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL + +VG+P  +A  LT PE VT+ N ++L   VI GP+T+PG N++   DG K  L
Sbjct: 332 DPNLDLGEVGVPTSIASKLTIPEIVTEWNIEKLKKLVINGPNTFPGVNYIVRPDGVKIRL 391

Query: 378 RY-GNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFNEC 554
            +  +  +VA  L +G +VERHL DGDVVLFNRQPSLH++SIM+H  +V+P +TFR +  
Sbjct: 392 DFVEDTLQVANQLEIGYLVERHLSDGDVVLFNRQPSLHQMSIMAHHVRVLPGKTFRLHPS 451

Query: 555 VC 560
           VC
Sbjct: 452 VC 453

[248][TOP]
>UniRef100_Q5I2R7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hygrophoropsis
           aurantiaca RepID=Q5I2R7_9HOMO
          Length = 991

 Score =  182 bits (463), Expect = 1e-44
 Identities = 94/177 (53%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
 Frame = +3

Query: 21  LQVEAARFMNSDATNLPP-LASTAKPLRGISQRLKGKTGRFRGNLSGKRVDFSGRTVISP 197
           LQ   A +M++D   +P  L  + +P++ I  RLKGK GR RGNL GKRVDFS RTVI+ 
Sbjct: 214 LQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITG 273

Query: 198 DPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDGNKRFL 377
           DPNL++D+VG+P  +A  LTYPERVT +N   L   V  GP  YPGA +V  D G +  L
Sbjct: 274 DPNLQLDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPGARYVVRDTGERIDL 333

Query: 378 RYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKVVPHRTFRFN 548
           RY   K+    L  G +VERHL DGD VLFNRQPSLH++S+MSH  K++P+ TFR N
Sbjct: 334 RY--NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLN 388

[249][TOP]
>UniRef100_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348
           RepID=A9CTM9_ENTBH
          Length = 1174

 Score =  182 bits (463), Expect = 1e-44
 Identities = 95/193 (49%), Positives = 133/193 (68%), Gaps = 8/193 (4%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLASTAKP-LRGISQRLKGKTGRFRGNLSGKRVDFSGR 182
           + W++LQ++ A ++NSD   LP +  T    ++ I  RLKGK GRFR NLSGKRVDFSGR
Sbjct: 257 EDWDYLQLQIALYINSD---LPSIHITNNDNIKSIIHRLKGKQGRFRMNLSGKRVDFSGR 313

Query: 183 TVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPGANFVETDDG 362
           TVISP+PNL ++Q+G+P  +A  +T PE+VT  N++ L   V  GP+   GAN++  ++ 
Sbjct: 314 TVISPNPNLSIEQIGVPKEIALEMTIPEKVTVFNKEELQILVNNGPNCIDGANYIIRNEV 373

Query: 363 N-------KRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSAKV 521
                   K FL++    KV ++L +G +VERH+ DGD+VLFNRQPSLHR+SIM+H  K+
Sbjct: 374 RNNETRTFKIFLKFAKNPKV-RELKVGDIVERHIKDGDIVLFNRQPSLHRMSIMAHRVKL 432

Query: 522 VPHRTFRFNECVC 560
             +RTF+FNE VC
Sbjct: 433 HDNRTFQFNESVC 445

[250][TOP]
>UniRef100_O26399 DNA-directed RNA polymerase n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=O26399_METTH
          Length = 664

 Score =  182 bits (463), Expect = 1e-44
 Identities = 94/195 (48%), Positives = 129/195 (66%), Gaps = 10/195 (5%)
 Frame = +3

Query: 6   DGWEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQRLKGKTG---------RFRGNLS 155
           D WE LQ     + +++A+ + P    + + L  + QRLK K G         RFRGNLS
Sbjct: 46  DLWELLQYHVTTYFDNEASGVTPARQRSGRQLLTLMQRLKSKKGMFSSELSKGRFRGNLS 105

Query: 156 GKRVDFSGRTVISPDPNLRVDQVGIPLRVARTLTYPERVTKHNRKRLAAAVIRGPDTYPG 335
           GKRV+FS RTVISPDPN+ +++VG+P  +AR +T P  VT+ N  R+   +  GPD +PG
Sbjct: 106 GKRVNFSARTVISPDPNISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPG 165

Query: 336 ANFVETDDGNKRFLRYGNRKKVAKDLPLGAVVERHLVDGDVVLFNRQPSLHRISIMSHSA 515
           AN+V   DG +  +   N + V ++L  G VVERHL DGD+VLFNRQPSLHR+S+M+H A
Sbjct: 166 ANYVIRPDGRRIRISSKNTETVIENLKPGYVVERHLKDGDIVLFNRQPSLHRMSLMAHRA 225

Query: 516 KVVPHRTFRFNECVC 560
           +V+P++TFR N CVC
Sbjct: 226 RVLPYKTFRLNLCVC 240