AU192697 ( PFL034g02_r )

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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
            RepID=O04142_PORYE
          Length = 1685

 Score =  316 bits (810), Expect(2) = 1e-91
 Identities = 164/164 (100%), Positives = 164/164 (100%)
 Frame = +1

Query: 55   FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 234
            FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA
Sbjct: 882  FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 941

Query: 235  EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR 414
            EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR
Sbjct: 942  EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR 1001

Query: 415  KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT
Sbjct: 1002 KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 1045

 Score = 44.7 bits (104), Expect(2) = 1e-91
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +3

Query: 3   QGVGTAEEGPRLPTPRGFQDG 65
           QGVGTAEEGPRLPTPRGF+ G
Sbjct: 865 QGVGTAEEGPRLPTPRGFKTG 885

[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
            RepID=O09451_9FLOR
          Length = 1732

 Score =  171 bits (434), Expect = 2e-41
 Identities = 91/183 (49%), Positives = 122/183 (66%), Gaps = 3/183 (1%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ Q++ DR  LR  + KTGE+K PLAVN++R+IWNAK+  ++  +  SDL P ++++GV
Sbjct: 849  EFQQIEADRKLLRDYIIKTGESKRPLAVNVDRVIWNAKQEHNIHADSVSDLKPDQVLKGV 908

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA---LKELSETAQLNATLLFQV 357
             +LL RTRVL   ++A ++  A E    +     P DE    +  L + AQ NATLLFQ+
Sbjct: 909  SMLLKRTRVLVLGDEAALENAALEPGMEEDDEGNPIDEKPTMVDPLMKEAQENATLLFQI 968

Query: 358  HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
            H+R+ LA K ++  HRLT KAF WLL E+ENRF       GE +GA AAQSIGEPATQMT
Sbjct: 969  HMRSMLACKKLIQLHRLTFKAFLWLLGEVENRFMMCRVAPGENIGAIAAQSIGEPATQMT 1028

Query: 538  LNT 546
            LNT
Sbjct: 1029 LNT 1031

[3][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score =  169 bits (428), Expect = 1e-40
 Identities = 95/193 (49%), Positives = 125/193 (64%), Gaps = 13/193 (6%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+AQ+K DRD L+ E+ ++ E+K PLAVNI+RLIWN K +F++RQ+  SDL+P  I++GV
Sbjct: 925  EFAQIKLDRDRLQREIIRSRESKWPLAVNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGV 984

Query: 187  ELLLHRTRVLT-------------SDEDAEVDAIAREMLPPDGSASGPQDEALKELSETA 327
            ++LL R  V+               D+ AEVD                 +   ++L+  A
Sbjct: 985  QILLSRCNVVALPPKSIKLLDEGDGDQVAEVDT----------------NSVSRQLAVEA 1028

Query: 328  QLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQ 507
            Q NATLL+ +H+RA LASKV+L E+RL +KAF  LL EIENRF  A  P GEM+GA A Q
Sbjct: 1029 QENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLLGEIENRFLHAKCPPGEMIGAVAPQ 1088

Query: 508  SIGEPATQMTLNT 546
            SIGEPATQMTLNT
Sbjct: 1089 SIGEPATQMTLNT 1101

[4][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
            uvarioides RepID=Q9AXN1_9FLOR
          Length = 1712

 Score =  164 bits (415), Expect = 4e-39
 Identities = 87/180 (48%), Positives = 125/180 (69%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ ++++DRD LR+ + K+GEAK P+AVNI+R+IWNAK+  ++R +  SDL+P ++ +G+
Sbjct: 850  EFQRIREDRDLLRNFIAKSGEAKRPMAVNIDRIIWNAKQAHNIRPDSVSDLTPVQVWKGI 909

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            ++LL RTRV+   +D + + +   +   +G     +  A     ET Q NAT++FQ+HVR
Sbjct: 910  KMLLKRTRVVEIGDDQDDEDVDDGVTDENGEMIDRKPVADPLTLET-QENATMIFQIHVR 968

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            + LA K V+  HRL   AF W+L EIENRF  A+A  GE +GA AAQSIGEPATQMTLNT
Sbjct: 969  SMLACKQVMVRHRLDINAFLWILGEIENRFLGAIAAPGENIGAIAAQSIGEPATQMTLNT 1028

[5][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179348F
          Length = 1862

 Score =  151 bits (381), Expect = 3e-35
 Identities = 87/181 (48%), Positives = 115/181 (63%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KEW QL  DRD LR E+F +GE+K+ L  N++R+IWN ++IF + +   +DL+P K+V G
Sbjct: 947  KEWEQLTNDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGPTDLNPIKVVNG 1005

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL +  V+ + ED                          ELS+ A  NATLLFQ  V
Sbjct: 1006 VKKLLDKC-VIVAGED--------------------------ELSKKANKNATLLFQCLV 1038

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L +K+V    RL+ +AF WL+ EIENRF+QA A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1039 RSTLCTKLVSENFRLSSEAFEWLVGEIENRFKQAQAQPGEMVGALAAQSLGEPATQMTLN 1098

Query: 544  T 546
            T
Sbjct: 1099 T 1099

[6][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
            RepID=Q84KP6_CYAME
          Length = 1819

 Score =  150 bits (378), Expect = 8e-35
 Identities = 91/181 (50%), Positives = 109/181 (60%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL  DR+ L   VF TGEAK PL VN++RLI N + IF ++ +  SDL P +I++G
Sbjct: 945  EEYQQLLADREQLC-AVFPTGEAKWPLMVNVQRLIQNCRSIFGIQHDTLSDLHPRQIIQG 1003

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V +LL R  V+  D+                           ELS  AQ NA LLF  HV
Sbjct: 1004 VRVLLQRCVVVPGDD---------------------------ELSREAQRNAVLLFAAHV 1036

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            RA LA+K VL  HRL  KAF WLL EIE RF +A A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1037 RAELATKRVLQIHRLNSKAFAWLLGEIETRFVRARATPGEMVGAVAAQSLGEPATQMTLN 1096

Query: 544  T 546
            T
Sbjct: 1097 T 1097

[7][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179338A
          Length = 1862

 Score =  148 bits (374), Expect = 2e-34
 Identities = 82/181 (45%), Positives = 114/181 (62%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL  DRD LR E+F +GE+K+ L  N++R+IWN ++IF + +  ++DL+P K++ G
Sbjct: 947  REWEQLTTDRDTLR-EIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGQTDLNPVKVING 1005

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL +  ++   +                           ELS+ A  NATLLFQ  V
Sbjct: 1006 VKELLDKCVIVAGGD---------------------------ELSKKANHNATLLFQCLV 1038

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L +K+V    RL+ +AF WL+ EIENRF+QA A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1039 RSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQAQAQPGEMVGALAAQSLGEPATQMTLN 1098

Query: 544  T 546
            T
Sbjct: 1099 T 1099

[8][TOP]
>UniRef100_UPI000051A77E PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            isoform 2 n=1 Tax=Apis mellifera RepID=UPI000051A77E
          Length = 1422

 Score =  148 bits (374), Expect = 2e-34
 Identities = 83/181 (45%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL KDR  LR E+F +GE+K+ L  N++R+IWN ++IF + +   +DLSP K+++G
Sbjct: 946  REWEQLNKDRAVLR-EIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMKVIQG 1004

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL +  ++  D+                            LS+ A  NATLLFQ  V
Sbjct: 1005 VKDLLDKCIIVAGDD---------------------------RLSKQANENATLLFQCLV 1037

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS+GEPATQMTLN
Sbjct: 1038 RSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMTLN 1097

Query: 544  T 546
            T
Sbjct: 1098 T 1098

[9][TOP]
>UniRef100_A9UEE2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cephaloboides cf.
           armata SB363 RepID=A9UEE2_9BILA
          Length = 475

 Score =  148 bits (373), Expect = 3e-34
 Identities = 83/180 (46%), Positives = 113/180 (62%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL++DR  LR ++F TG+AK+ L  N++RLIWNA++IF V     +DL+P +++ G+
Sbjct: 154 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGI 212

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  V+ S ED                           +S+ AQ NATLL  + +R
Sbjct: 213 RELSTKL-VIVSGED--------------------------RISQQAQYNATLLMNILIR 245

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK + S H+L  +AF WLL EIE RF+QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 246 STLCSKKMASTHKLNSEAFEWLLGEIETRFKQAIAQPGEMVGALAAQSLGEPATQMTLNT 305

[10][TOP]
>UniRef100_A9QMT2 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QMT2_9PELO
          Length = 488

 Score =  148 bits (373), Expect = 3e-34
 Identities = 80/181 (44%), Positives = 113/181 (62%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           KEWAQL++DR  LR ++F TG AK+ L  N++RLIWNA++IF V     +DL+P +++ G
Sbjct: 145 KEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEG 203

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  +  +++ D+                            +S+ AQ NATLL  + +
Sbjct: 204 VRELSEKLVIVSGDD---------------------------RISKQAQYNATLLMNILI 236

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK + S +RL  +AF W+L E+E RF+QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 237 RSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 296

Query: 544 T 546
           T
Sbjct: 297 T 297

[11][TOP]
>UniRef100_A9QME0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis typica
           RepID=A9QME0_9PELO
          Length = 633

 Score =  148 bits (373), Expect = 3e-34
 Identities = 80/181 (44%), Positives = 113/181 (62%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           KEWAQL++DR  LR ++F TG AK+ L  N++RLIWNA++IF V     +DL+P +++ G
Sbjct: 159 KEWAQLEEDRRLLR-KIFPTGNAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEG 217

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  +  +++ D+                            +S+ AQ NATLL  + +
Sbjct: 218 VRELSEKLVIVSGDD---------------------------RISKQAQYNATLLMNILI 250

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK + S +RL  +AF W+L E+E RF+QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 251 RSTLCSKKMASTYRLNSEAFEWMLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 310

Query: 544 T 546
           T
Sbjct: 311 T 311

[12][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
            RepID=UPI0000D5670C
          Length = 2007

 Score =  145 bits (367), Expect = 1e-33
 Identities = 83/180 (46%), Positives = 114/180 (63%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW QL+KDR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 951  EWEQLQKDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGV 1009

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              LL++  V+ + ED                           LS+ A  NATLLFQ  VR
Sbjct: 1010 RELLNKC-VIVAGED--------------------------RLSKQANENATLLFQCLVR 1042

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1043 STLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQVNPGEMVGALAAQSLGEPATQMTLNT 1102

[13][TOP]
>UniRef100_A9QMF6 RNA polymerase 2 (Fragment) n=1 Tax=Pristionchus pacificus
           RepID=A9QMF6_PRIPA
          Length = 583

 Score =  145 bits (366), Expect = 2e-33
 Identities = 82/180 (45%), Positives = 110/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR+ LR  +F  G+AK+ L  N++RLIWNA++IF V     +DLSP +++ GV
Sbjct: 127 EWQQLQEDRELLRM-IFPKGDAKIVLPCNLQRLIWNAQKIFHVEMRKPTDLSPVRVIEGV 185

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             +  +  ++   ED                           +S+ AQ NATLL  + VR
Sbjct: 186 REVSKKL-IIVGGED--------------------------RISKQAQYNATLLMNILVR 218

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK +  +HRL  +AF WLL EIE RFQQA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 219 STLCSKQLAEKHRLNSEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 278

[14][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score =  145 bits (366), Expect = 2e-33
 Identities = 82/181 (45%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KE+ ++K DR  LR+E+  +GEA  PL VN+ RLI NA+++F++     SDL+P+ +V  
Sbjct: 940  KEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLE 999

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            +E L+ R +++ + +  E                   DE           NAT+LF + V
Sbjct: 1000 IEKLVARLKIIATADTTE------------------DDENFNRAWAEVYFNATMLFSILV 1041

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++ ASK VL+E RLT KAF W+  EIE++F QALA  GEMVGA AAQSIGEPATQMTLN
Sbjct: 1042 RSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLN 1101

Query: 544  T 546
            T
Sbjct: 1102 T 1102

[15][TOP]
>UniRef100_Q6GYH6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Prodontorhabditis
           wirthi RepID=Q6GYH6_9BILA
          Length = 630

 Score =  145 bits (365), Expect = 2e-33
 Identities = 80/180 (44%), Positives = 111/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL++DR  LR ++F TG AK+ L  N++RLIWNA++IF V     + L+P K+++GV
Sbjct: 166 EWAQLEEDRQLLR-KIFPTGNAKIVLPCNLQRLIWNAQKIFHVEMRKPTTLNPMKVIQGV 224

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++  ++                            +S+ AQ NATLL  + +R
Sbjct: 225 RELSKKLIIVNGED---------------------------RISKQAQYNATLLTNILIR 257

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK + S ++L  +AF WLL EIENRFQ A+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 258 STLCSKKMASTYKLDSEAFDWLLGEIENRFQSAIAQPGEMVGALAAQSLGEPATQMTLNT 317

[16][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score =  144 bits (364), Expect = 3e-33
 Identities = 81/181 (44%), Positives = 113/181 (62%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QLK DR+ LR+ +F  G  K+ L V + RLIWN++++F V    ++DLSP K++  
Sbjct: 954  EEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQKMFKVNLRAQTDLSPLKVIND 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            ++ L  R  V+  ++                           +LS+ AQLNAT+LFQ+H+
Sbjct: 1013 IKDLTKRLLVVKGED---------------------------KLSKEAQLNATMLFQIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L SK V+ E RLT +AF WLL E+E+RF  A A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[17][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score =  144 bits (364), Expect = 3e-33
 Identities = 81/181 (44%), Positives = 113/181 (62%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QLK DR+ LR+ +F  G  K+ L V + RLIWN++++F V    ++DLSP K++  
Sbjct: 955  EEFRQLKDDREMLRN-IFPNGNKKVNLPVKLSRLIWNSQKMFKVNLRAQTDLSPLKVIND 1013

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            ++ L  R  V+  ++                           +LS+ AQLNAT+LFQ+H+
Sbjct: 1014 IKDLTKRLLVVKGED---------------------------KLSKEAQLNATMLFQIHL 1046

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L SK V+ E RLT +AF WLL E+E+RF  A A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1047 RSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQSLGEPATQMTLN 1106

Query: 544  T 546
            T
Sbjct: 1107 T 1107

[18][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila simulans RepID=Q1WKU2_DROSI
          Length = 746

 Score =  144 bits (364), Expect = 3e-33
 Identities = 80/180 (44%), Positives = 112/180 (62%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 89  EWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGV 147

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 148 KTLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 180

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 181 STLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 240

[19][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4IK28_DROSE
          Length = 1887

 Score =  144 bits (364), Expect = 3e-33
 Identities = 80/180 (44%), Positives = 112/180 (62%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KTLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[20][TOP]
>UniRef100_A9YGC1 RNA polymerase II 215 kD subunit (Fragment) n=2 Tax=melanogaster
           subgroup RepID=A9YGC1_DROME
          Length = 247

 Score =  144 bits (364), Expect = 3e-33
 Identities = 80/180 (44%), Positives = 112/180 (62%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 4   EWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGV 62

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 63  KTLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 95

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 96  STLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 155

[21][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
            RepID=A9UNH9_DROME
          Length = 1887

 Score =  144 bits (364), Expect = 3e-33
 Identities = 80/180 (44%), Positives = 112/180 (62%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KTLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[22][TOP]
>UniRef100_A9QMG9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           regenfussi RepID=A9QMG9_9BILA
          Length = 620

 Score =  144 bits (364), Expect = 3e-33
 Identities = 78/180 (43%), Positives = 112/180 (62%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA+++F V    +++L+P +++ GV
Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKVVLPCNLQRLIWNAQKVFHVETRKQTELNPLRVIEGV 214

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++  D+                            +S+ AQ NATLL  + +R
Sbjct: 215 RELSKKLVIVGGDD---------------------------RISKQAQFNATLLMNILLR 247

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK V  +HRL ++AF WL+ EIE RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 248 STLCSKQVAEKHRLNQEAFEWLIGEIETRFXQAIAQPGEMVGALAAQSLGEPATQMTLNT 307

[23][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
            melanogaster RepID=RPB1_DROME
          Length = 1887

 Score =  144 bits (364), Expect = 3e-33
 Identities = 80/180 (44%), Positives = 112/180 (62%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW +L  DRD LR ++F  GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDRLVSDRDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KTLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[24][TOP]
>UniRef100_Q23699 DNA-directed RNA polymerase (Fragment) n=1 Tax=Crassostrea gigas
            RepID=Q23699_CRAGI
          Length = 1340

 Score =  144 bits (363), Expect = 4e-33
 Identities = 82/181 (45%), Positives = 111/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL++DRD LR  +F TG++K+ L  N++R+IWNA++IF +  +  +DL P K+V G
Sbjct: 865  REWEQLREDRDILR-SIFPTGDSKVVLPCNLQRMIWNAQKIFRIDTHKPTDLHPIKVVEG 923

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            VE L  R  V+   +                            LS  A  NATLLF+  +
Sbjct: 924  VEDLCKRLIVVAGGD---------------------------RLSIQANANATLLFKCLI 956

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L +K V  E RL+ +AF WL+ E+E+RFQQA A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 957  RSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQSLGEPATQMTLN 1016

Query: 544  T 546
            T
Sbjct: 1017 T 1017

[25][TOP]
>UniRef100_A9QMQ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phasmarhabditis sp.
           EM434 RepID=A9QMQ7_9BILA
          Length = 398

 Score =  144 bits (363), Expect = 4e-33
 Identities = 80/180 (44%), Positives = 112/180 (62%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F +G+AK+ L  N++RLIWNA++IF V     +DL+P +++ GV
Sbjct: 164 EWNQLEEDRRLLR-KIFPSGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIEGV 222

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++ S ED                           +S+ AQ NATLL  + +R
Sbjct: 223 RELSKKL-IIVSGED--------------------------RISKQAQYNATLLMNILIR 255

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK + + HRL  +AF WLL E+E RF+QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKMATSHRLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLNT 315

[26][TOP]
>UniRef100_A9QMG4 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera strongyloides
           dermatitica RepID=A9QMG4_9PELO
          Length = 478

 Score =  144 bits (363), Expect = 4e-33
 Identities = 80/180 (44%), Positives = 109/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++IF V     S L+P K+V GV
Sbjct: 146 EWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKIFKVETRKPSSLNPLKVVSGV 204

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + L H+  ++  D+                            +S+ AQ NATLL  + +R
Sbjct: 205 KELSHKLVIVCGDD---------------------------RISKQAQYNATLLMNILIR 237

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK +  +HRL  + F WLL EIE+RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 238 STLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQSLGEPATQMTLNT 297

[27][TOP]
>UniRef100_A9QMF0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera
           strongyloides dermatitica RepID=A9QMF0_9PELO
          Length = 633

 Score =  144 bits (363), Expect = 4e-33
 Identities = 80/180 (44%), Positives = 109/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++IF V     S L+P K+V GV
Sbjct: 165 EWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKIFKVETRKPSSLNPLKVVSGV 223

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + L H+  ++  D+                            +S+ AQ NATLL  + +R
Sbjct: 224 KELSHKLVIVCGDD---------------------------RISKQAQYNATLLMNILIR 256

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK +  +HRL  + F WLL EIE+RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 257 STLCSKQMAEKHRLNEEGFEWLLGEIEHRFNQAIAQPGEMVGALAAQSLGEPATQMTLNT 316

[28][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
            RepID=UPI000186D846
          Length = 1885

 Score =  144 bits (362), Expect = 5e-33
 Identities = 83/181 (45%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KEW QL+KDR+ LR ++F +GE K+ L  N++R+IWN ++IF + +   +DLSP +++ G
Sbjct: 939  KEWDQLQKDREALR-QIFPSGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIEG 997

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 998  VRDLLQKC-VIVAGED--------------------------HLSKQANENATLLFQCLV 1030

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L +K V  + RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS+GEPATQMTLN
Sbjct: 1031 RSTLCTKCVSEDMRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPATQMTLN 1090

Query: 544  T 546
            T
Sbjct: 1091 T 1091

[29][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score =  144 bits (362), Expect = 5e-33
 Identities = 87/180 (48%), Positives = 108/180 (60%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ QL  DR  LR  +  T E   PL VN++RLIWNA++IF +     SDL P  I++GV
Sbjct: 942  EFKQLMNDRTALRESI-PTDENTWPLPVNLKRLIWNAQKIFHIDVRKPSDLDPVDIIKGV 1000

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             LL  +  V+  ++   V+A                           Q NAT+LFQ+ VR
Sbjct: 1001 NLLTKQLVVIPGEDPLSVEA---------------------------QANATMLFQILVR 1033

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            + LASK VL+E+RLT  AF WLL EIE+RF QA+A  GEMVGA AAQSIGEPATQMTLNT
Sbjct: 1034 SCLASKRVLTEYRLTSHAFEWLLGEIESRFLQAIANPGEMVGAIAAQSIGEPATQMTLNT 1093

[30][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
            pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
          Length = 1811

 Score =  144 bits (362), Expect = 5e-33
 Identities = 79/180 (43%), Positives = 111/180 (61%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW  L +DRD LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 869  EWDHLMQDRDHLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 927

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T  +                            +S+ A  NATLLFQ  +R
Sbjct: 928  KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 960

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 961  STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1020

[31][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
            pseudoobscura RepID=Q29IN2_DROPS
          Length = 1889

 Score =  144 bits (362), Expect = 5e-33
 Identities = 79/180 (43%), Positives = 111/180 (61%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW  L +DRD LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDHLMQDRDHLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T  +                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[32][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
            RepID=B4H2R8_DROPE
          Length = 1804

 Score =  144 bits (362), Expect = 5e-33
 Identities = 79/180 (43%), Positives = 111/180 (61%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW  L +DRD LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDHLMQDRDHLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T  +                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[33][TOP]
>UniRef100_O01364 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cruznema tripartitum
           RepID=O01364_9BILA
          Length = 633

 Score =  143 bits (361), Expect = 7e-33
 Identities = 80/180 (44%), Positives = 112/180 (62%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL++DR  LR ++F TG+AK+ L  N++RL+WNA++IF V     +DL+P +++ GV
Sbjct: 160 EWAQLEEDRRLLR-KIFPTGDAKIVLPCNLKRLLWNAQKIFHVEMRKPTDLNPLRVIEGV 218

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  V+   ED                           +S+ AQ NATLL  + +R
Sbjct: 219 RELSKKL-VIVGGED--------------------------RISKQAQYNATLLMNILLR 251

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK + S ++L ++AF WLL E+E RFQQ +A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 252 STLCSKQMASHYKLNQEAFDWLLGEVETRFQQPIAQPGEMVGALAAQSLGEPATQMTLNT 311

[34][TOP]
>UniRef100_O01375 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=O01375_9BILA
          Length = 631

 Score =  143 bits (360), Expect = 9e-33
 Identities = 81/181 (44%), Positives = 112/181 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++IF +     +DLSP +++ G
Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 217

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           +  L  +  V+ S ED                           +S+ AQ NATLL  + +
Sbjct: 218 IRELSKKL-VIVSGED--------------------------RISKQAQYNATLLMNILI 250

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK V S H+L  +AF WLL EIE+RF+QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 251 RSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 310

Query: 544 T 546
           T
Sbjct: 311 T 311

[35][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4JXA6_DROGR
          Length = 1889

 Score =  143 bits (360), Expect = 9e-33
 Identities = 80/180 (44%), Positives = 111/180 (61%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW  L  DRD LR  +F+ G++K+ L  N++R+IWN ++IF + +   +DLSP +++RGV
Sbjct: 947  EWDHLVTDRDNLR-TIFRNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              LL+R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 1006 SDLLNRCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[36][TOP]
>UniRef100_A9QMS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuticonema vivipara
           RepID=A9QMS7_9BILA
          Length = 407

 Score =  143 bits (360), Expect = 9e-33
 Identities = 81/181 (44%), Positives = 113/181 (62%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL+ DR  LR ++F TG+A + L  N++R++WNA++IF V     +DLSP K+++G
Sbjct: 163 EEWIQLESDRRLLR-KIFPTGKAGVVLPCNLDRMMWNARKIFHVETRKPTDLSPLKVIQG 221

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V+ L  R  V+ S ED                          ++S+ AQ NATLL  + +
Sbjct: 222 VKDLTSRL-VIVSGED--------------------------KISQQAQYNATLLMNILL 254

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK +  +H+L  +AF WLL EIE +F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 255 RSTLCSKRLAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQSLGEPATQMTLN 314

Query: 544 T 546
           T
Sbjct: 315 T 315

[37][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
            RepID=Q30BD8_CYAPA
          Length = 1000

 Score =  142 bits (359), Expect = 1e-32
 Identities = 84/177 (47%), Positives = 110/177 (62%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KE+ QL KDR+ LR E+ ++GE  + L VN++RLIWNA++I+ V  +  SDL P  I++G
Sbjct: 851  KEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIWNAQKIYKVDTSKPSDLRPDIILQG 910

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            VELL  +  V+  ++                            LS  AQ NAT LF +H+
Sbjct: 911  VELLSTQLVVIAGEDT---------------------------LSREAQENATRLFNIHL 943

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQM 534
            RA+LA+K VLSE+RL+  A  WLL  IE+RF QA+A  GEMVGA AAQSIGEPATQM
Sbjct: 944  RATLATKRVLSEYRLSAAALEWLLGVIESRFNQAIAHPGEMVGAIAAQSIGEPATQM 1000

[38][TOP]
>UniRef100_Q2N162 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Suberites fuscus RepID=Q2N162_9METZ
          Length = 260

 Score =  142 bits (359), Expect = 1e-32
 Identities = 83/180 (46%), Positives = 110/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL +DR+ +R  VF TG +K+ L VN+ RLIWNA++IF V    ++DL P K+V GV
Sbjct: 103 EWQQLCQDREIVR-SVFPTGNSKIVLPVNLNRLIWNAQKIFHVDIRGQTDLHPLKVVEGV 161

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L ++  ++  ++                           ELS+ AQ NATLLF+  +R
Sbjct: 162 RDLSNKLIIVQGED---------------------------ELSKQAQTNATLLFKSLLR 194

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           + L +K +  EH+L  +AF W+L EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 195 SVLCTKKMSEEHKLNLEAFEWVLGEIETRFQQAQAQPGEMVGALAAQSLGEPATQMTLNT 254

[39][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
            RepID=B4MAN9_DROVI
          Length = 1889

 Score =  142 bits (359), Expect = 1e-32
 Identities = 80/180 (44%), Positives = 111/180 (61%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW +L  DRD LR  +F  G++K+ L  N++R+IWN ++IF + +   +DLSP +++RGV
Sbjct: 947  EWDRLVSDRDNLR-TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[40][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4L732_DROMO
          Length = 1889

 Score =  142 bits (359), Expect = 1e-32
 Identities = 80/180 (44%), Positives = 111/180 (61%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW +L  DRD LR  +F  G++K+ L  N++R+IWN ++IF + +   +DLSP +++RGV
Sbjct: 947  EWDRLVSDRDNLR-TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[41][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MQ29_DROAN
          Length = 1889

 Score =  142 bits (359), Expect = 1e-32
 Identities = 79/180 (43%), Positives = 112/180 (62%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW +L  DRD LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDRLVTDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[42][TOP]
>UniRef100_A9QMP5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius insectivora
           RepID=A9QMP5_9BILA
          Length = 474

 Score =  142 bits (359), Expect = 1e-32
 Identities = 77/181 (42%), Positives = 113/181 (62%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           KEW QL++DR  LR ++F TG+AK+ L  N++RLIWNA++IF V     + L+P ++++G
Sbjct: 152 KEWDQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRQPTSLNPLRVIQG 210

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  +  ++  D+                            +S+ AQ NATLL  + +
Sbjct: 211 VRELSEKLVIVCGDD---------------------------RISKQAQYNATLLMNILL 243

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK + + ++L ++AF WLL E+E RF+QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 244 RSTLCSKKMATTYKLNQEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 303

Query: 544 T 546
           T
Sbjct: 304 T 304

[43][TOP]
>UniRef100_A9QMH3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. PS1130
           RepID=A9QMH3_9BILA
          Length = 619

 Score =  142 bits (359), Expect = 1e-32
 Identities = 79/181 (43%), Positives = 114/181 (62%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL++DR  LR ++F +G AK+ L  N++RL+WNA++IF V     +DL+P +++ G
Sbjct: 155 QEWGQLEEDRRLLR-KIFPSGNAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEG 213

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  +  ++ S ED                          ++S+ AQ NATLL  + V
Sbjct: 214 VRELSKKL-IIVSGED--------------------------KISKQAQYNATLLMNILV 246

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK + S+++L  +AF WLL E+E RF+QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 247 RSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 306

Query: 544 T 546
           T
Sbjct: 307 T 307

[44][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila erecta RepID=Q1WKU4_DROER
          Length = 760

 Score =  142 bits (358), Expect = 2e-32
 Identities = 79/180 (43%), Positives = 112/180 (62%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW +L  DRD LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 89  EWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 147

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 148 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 180

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 181 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 240

[45][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
           Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
          Length = 766

 Score =  142 bits (358), Expect = 2e-32
 Identities = 79/180 (43%), Positives = 112/180 (62%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW +L  DRD LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 89  EWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 147

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 148 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 180

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 181 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 240

[46][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4PY98_DROYA
          Length = 1889

 Score =  142 bits (358), Expect = 2e-32
 Identities = 79/180 (43%), Positives = 112/180 (62%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW +L  DRD LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[47][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4NDK9_DROWI
          Length = 1890

 Score =  142 bits (358), Expect = 2e-32
 Identities = 80/180 (44%), Positives = 111/180 (61%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW +L  DRD LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDRLVVDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              LL R  ++T ++                            +S+ A  NATLLFQ  VR
Sbjct: 1006 RGLLERCVIVTGND---------------------------RISKQANENATLLFQCLVR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[48][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NUC1_DROER
          Length = 1889

 Score =  142 bits (358), Expect = 2e-32
 Identities = 79/180 (43%), Positives = 112/180 (62%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW +L  DRD LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDRLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[49][TOP]
>UniRef100_A9QME1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QME1_9BILA
          Length = 628

 Score =  142 bits (358), Expect = 2e-32
 Identities = 79/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL++DR  LR ++F  G AK+ L  N++RL+WNA++IF V     +DL+P +++ G
Sbjct: 156 QEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEG 214

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  +  ++ S ED                           +S+ AQ NATLL  + V
Sbjct: 215 VRELSQKL-IIVSGED--------------------------RISKQAQYNATLLMNILV 247

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK + S+++L  +AF WLL E+E RF+QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 248 RSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 307

Query: 544 T 546
           T
Sbjct: 308 T 308

[50][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila orena RepID=Q1WKU3_DROOR
          Length = 750

 Score =  142 bits (357), Expect = 2e-32
 Identities = 79/180 (43%), Positives = 111/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW  L  DRD LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 89  EWDHLVGDRDSLR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 147

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + LL R  ++T ++                            +S+ A  NATLLFQ  +R
Sbjct: 148 KGLLERCVIVTGND---------------------------RISKQANENATLLFQCLIR 180

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 181 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 240

[51][TOP]
>UniRef100_P90678 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aduncospiculum
           halicti RepID=P90678_9BILA
          Length = 631

 Score =  142 bits (357), Expect = 2e-32
 Identities = 78/180 (43%), Positives = 109/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL+ DR  LR ++F  G+AK+ L  N++RLIWNA++IF V     +DL+P ++++GV
Sbjct: 160 EWMQLQDDRQLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVETRKVTDLNPVRVIQGV 218

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             +  +  ++  D+                            +S  AQ NATLL  + VR
Sbjct: 219 REVSKKLIIVGGDD---------------------------RISVQAQYNATLLMNILVR 251

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K +  +H+L  +AF WLL EIE RFQQA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 252 STLCAKAMAEKHKLNAEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 311

[52][TOP]
>UniRef100_A9QMR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides
           inermiformis RepID=A9QMR5_9BILA
          Length = 524

 Score =  141 bits (356), Expect = 3e-32
 Identities = 79/180 (43%), Positives = 111/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  G++K+ L  N++RLIWNA++IF V   ++S L+P +++ GV
Sbjct: 154 EWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFHVETREKSSLNPLRVIAGV 212

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             +  +  V+   ED                           +S+ AQ NATLL  + VR
Sbjct: 213 REMSQKL-VIVGGED--------------------------RISKQAQYNATLLMNILVR 245

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK +  ++RL  +AF WLL E+E RFQQA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 246 STLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 305

[53][TOP]
>UniRef100_A9QMF4 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermiformis
           RepID=A9QMF4_9BILA
          Length = 597

 Score =  141 bits (356), Expect = 3e-32
 Identities = 79/180 (43%), Positives = 111/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  G++K+ L  N++RLIWNA++IF V   ++S L+P +++ GV
Sbjct: 122 EWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFHVETREKSSLNPLRVIAGV 180

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             +  +  V+   ED                           +S+ AQ NATLL  + VR
Sbjct: 181 REMSQKL-VIVGGED--------------------------RISKQAQYNATLLMNILVR 213

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK +  ++RL  +AF WLL E+E RFQQA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 214 STLCSKQMADKYRLNAQAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 273

[54][TOP]
>UniRef100_A9QME6 RNA polymerase 2 (Fragment) n=1 Tax=Pellioditis sp. JU274
           RepID=A9QME6_9PELO
          Length = 526

 Score =  141 bits (356), Expect = 3e-32
 Identities = 80/181 (44%), Positives = 113/181 (62%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EWAQL++DR  LR ++F  G+AK+ L  N+ RLIWNA++IF V     ++L+P++++ G
Sbjct: 60  EEWAQLEEDRRLLR-KIFPRGDAKVVLPCNLNRLIWNAQKIFKVETRKLTNLNPTRVIDG 118

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  +  ++ S ED                           +S+ AQ NATLL  + +
Sbjct: 119 VRNLSKKL-IIVSGED--------------------------RISKQAQYNATLLMNILL 151

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK + S ++L  +AF WLL E+E RFQQA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 152 RSTLCSKKMASTYKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLGEPATQMTLN 211

Query: 544 T 546
           T
Sbjct: 212 T 212

[55][TOP]
>UniRef100_Q6E228 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditella axei
           RepID=Q6E228_9BILA
          Length = 621

 Score =  141 bits (355), Expect = 4e-32
 Identities = 78/180 (43%), Positives = 113/180 (62%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F TG+AK+ L  N++RLIWNA++IF V     +DL+P +++ G+
Sbjct: 164 EWHQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPLRVIDGI 222

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + L  +  ++ S ED                           +S+ AQ NATLL  + +R
Sbjct: 223 KELSSKL-IIVSGED--------------------------RISQQAQYNATLLMNILIR 255

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK + S ++L  ++F WL+ EIE RF+QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKMASTYKLNAESFEWLIGEIETRFKQAIAQPGEMVGALAAQSLGEPATQMTLNT 315

[56][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
            RepID=Q4SF83_TETNG
          Length = 1745

 Score =  140 bits (354), Expect = 5e-32
 Identities = 81/189 (42%), Positives = 116/189 (61%), Gaps = 8/189 (4%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++K+DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     +DLSP ++V G
Sbjct: 828  REFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEG 886

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALK--------ELSETAQLNA 339
            +   +    +  S       +IA          SG  + + K         LS  AQ NA
Sbjct: 887  ILSSVSLNEICCSPPFTLNISIADIQFEHVFGLSGTHELSKKLVIVNGDDPLSRQAQQNA 946

Query: 340  TLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGE 519
            TLLF +H+R++L SK +  E RL+ +AF WLL EIE +F Q++A  GEMVGA AAQS+GE
Sbjct: 947  TLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGE 1006

Query: 520  PATQMTLNT 546
            PATQMTLNT
Sbjct: 1007 PATQMTLNT 1015

[57][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
            RepID=Q9XZU9_DROSU
          Length = 1889

 Score =  140 bits (354), Expect = 5e-32
 Identities = 79/180 (43%), Positives = 109/180 (60%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW  L  DRD LR  +F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDHLMHDRDNLR-VIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T  +                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[58][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
            RepID=Q9XZS2_DROMD
          Length = 1889

 Score =  140 bits (354), Expect = 5e-32
 Identities = 79/180 (43%), Positives = 109/180 (60%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW  L  DRD LR  +F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDNLMHDRDNLR-VIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T  +                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[59][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
            RepID=Q9XZS1_DROGU
          Length = 1889

 Score =  140 bits (354), Expect = 5e-32
 Identities = 79/180 (43%), Positives = 109/180 (60%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW  L  DRD LR  +F  G++K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 947  EWDHLMHDRDNLR-VIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + LL R  ++T  +                            +S+ A  NATLLFQ  +R
Sbjct: 1006 KTLLERCVIVTGAD---------------------------RISKQANENATLLFQCLIR 1038

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1039 STLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNT 1098

[60][TOP]
>UniRef100_Q25203 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ilyanassa obsoleta
            RepID=Q25203_9CAEN
          Length = 1343

 Score =  140 bits (354), Expect = 5e-32
 Identities = 81/180 (45%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW QL  DRD  R +VF TG+A++ L  N++R+IWNA++IF + +   SDL P  +V GV
Sbjct: 869  EWLQLISDRDSAR-QVFSTGDARIVLPCNLQRMIWNAQKIFRIDKRKPSDLDPINVVSGV 927

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              L  R  ++  ++                            +S+ A  NATLL +  +R
Sbjct: 928  RDLCQRLTIVEGED---------------------------MISKQANENATLLMKCLIR 960

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  EHRL+  AF WLL EIE RFQQA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 961  STLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHPGEMVGALAAQSLGEPATQMTLNT 1020

[61][TOP]
>UniRef100_A9QMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis brassicae
           RepID=A9QMP3_9BILA
          Length = 406

 Score =  140 bits (354), Expect = 5e-32
 Identities = 76/181 (41%), Positives = 111/181 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL++DR  LR ++F  G AK+ L  N++RL+WNA++IF V     +DL+P +++ G
Sbjct: 163 QEWGQLEEDRRLLR-KIFPNGNAKIVLPCNLQRLLWNAQKIFHVETRKPTDLNPLRVIEG 221

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  +  +++ +                             +S+ AQ NATLL  + V
Sbjct: 222 VRELSQKLIIVSGEN---------------------------RISKQAQYNATLLMNILV 254

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK + S+++L  +AF WLL E+E RF+QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 255 RSTLCSKKMASKYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLN 314

Query: 544 T 546
           T
Sbjct: 315 T 315

[62][TOP]
>UniRef100_A9QMF2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pelodera teres
           RepID=A9QMF2_9PELO
          Length = 629

 Score =  140 bits (354), Expect = 5e-32
 Identities = 79/181 (43%), Positives = 110/181 (60%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL++DR  LR ++F  GE+K+ L  N++RLIWNA++IF V     + L+P ++V+G
Sbjct: 159 EEWQQLEEDRRLLR-KIFPKGESKVVLPCNLQRLIWNAQKIFKVETRKVTALNPLRVVQG 217

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  +  ++  D+                            +S+ AQ NATLL  + +
Sbjct: 218 VRDLSKKLIIVMGDD---------------------------RISKQAQYNATLLVNILI 250

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK +  +HRL   AF WLL EIE+RFQQA+   GEMVGA AAQS+GEPATQMTLN
Sbjct: 251 RSTLCSKQMSEKHRLNESAFDWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMTLN 310

Query: 544 T 546
           T
Sbjct: 311 T 311

[63][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score =  140 bits (354), Expect = 5e-32
 Identities = 76/181 (41%), Positives = 117/181 (64%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+AQL+ DR+ LRHE+F++ + ++ L +N+ RL+ NA++IF V     +DLSP++++ G
Sbjct: 942  EEFAQLEFDRNLLRHEIFQSDQVQVRLPMNVARLVLNAQQIFHVDPRKPTDLSPAEVIIG 1001

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            +  +L R  V+  D     D I+RE                      AQ+NATLLF++H+
Sbjct: 1002 LRNVLDRLIVIRGD-----DPISRE----------------------AQMNATLLFKIHL 1034

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ L SK+V+ +H + ++A+ W+L EIE +F +++A  GEM G  AAQSIGEPATQMTLN
Sbjct: 1035 RSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGEMCGTLAAQSIGEPATQMTLN 1094

Query: 544  T 546
            T
Sbjct: 1095 T 1095

[64][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
            RepID=UPI0000546D90
          Length = 1972

 Score =  140 bits (353), Expect = 6e-32
 Identities = 76/181 (41%), Positives = 114/181 (62%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     +DL+P+++V G
Sbjct: 951  REFEKMREDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINPRAPTDLNPARVVDG 1009

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                           +LS  AQ NATLLF +H+
Sbjct: 1010 VKELSKKLVIVNGDD---------------------------QLSRQAQENATLLFNIHL 1042

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L SK +  E RL+ +AF WLL EIE +F Q++A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1043 RSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLN 1102

Query: 544  T 546
            T
Sbjct: 1103 T 1103

[65][TOP]
>UniRef100_Q9NJN3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q9NJN3_ARMVU
          Length = 433

 Score =  140 bits (353), Expect = 6e-32
 Identities = 79/180 (43%), Positives = 109/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW +L++DR  LR +VF  G+ K+ L  N+ER+IWN ++IF + +  ++DLSP K+V GV
Sbjct: 112 EWQKLQEDRVALR-QVFPKGDTKVVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGV 170

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              L +  +++ ++                            +S  A  NATLLF   VR
Sbjct: 171 NETLRKCMIVSGED---------------------------RISVQANENATLLFHCLVR 203

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K V  E+RLT +AF WL+ EIE RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 204 STLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQSLGEPATQMTLNT 263

[66][TOP]
>UniRef100_Q6JU60 DNA-directed RNA polymerase (Fragment) n=1 Tax=Armadillidium
           vulgare RepID=Q6JU60_ARMVU
          Length = 736

 Score =  140 bits (353), Expect = 6e-32
 Identities = 79/180 (43%), Positives = 109/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW +L++DR  LR +VF  G+ K+ L  N+ER+IWN ++IF + +  ++DLSP K+V GV
Sbjct: 415 EWQKLQEDRVALR-QVFPKGDTKVVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGV 473

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              L +  +++ ++                            +S  A  NATLLF   VR
Sbjct: 474 NETLRKCMIVSGED---------------------------RISVQANENATLLFHCLVR 506

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K V  E+RLT +AF WL+ EIE RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 507 STLCTKKVSEEYRLTTEAFNWLMGEIETRFNQAIANPGEMVGALAAQSLGEPATQMTLNT 566

[67][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
            RepID=Q17085_ARTSA
          Length = 1341

 Score =  140 bits (353), Expect = 6e-32
 Identities = 84/181 (46%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KEW  L KDR+ LR +VF +GE K+ L  N++R+IWNA++ F + +   SDLSP ++++G
Sbjct: 866  KEWEALVKDREALR-KVFPSGENKVVLPCNLQRMIWNAQKTFHINKRMPSDLSPLRVIQG 924

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  LL +  V+ + ED                          +LS+ A  NATLLFQ  V
Sbjct: 925  VRDLL-KNCVIVNGED--------------------------KLSKQANENATLLFQCLV 957

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L +K +  E+RL  +AF WL+ EIE RFQ A A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 958  RSTLCTKRLADEYRLNTEAFEWLIGEIETRFQLAQAVPGEMVGAIAAQSLGEPATQMTLN 1017

Query: 544  T 546
            T
Sbjct: 1018 T 1018

[68][TOP]
>UniRef100_A9QMF9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis rainai
           RepID=A9QMF9_9BILA
          Length = 618

 Score =  140 bits (353), Expect = 6e-32
 Identities = 78/180 (43%), Positives = 111/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL++DR  LR ++F TG AK+ L  N++RLIWN ++IF V     + L+P K++ GV
Sbjct: 155 EWAQLEEDRRLLR-KIFPTGNAKVVLPCNLQRLIWNXQKIFRVETRKPTSLNPLKVISGV 213

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + L  +  +++ D+                            +S+ AQ NATLL  + +R
Sbjct: 214 QELSKKLIIVSGDDS---------------------------ISKQAQYNATLLMNILLR 246

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK + S ++L  +AF WLL E+E RF+QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 247 STLCSKRMASMYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLGEPATQMTLNT 306

[69][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B0A92
          Length = 1714

 Score =  140 bits (352), Expect = 8e-32
 Identities = 77/181 (42%), Positives = 110/181 (60%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++K+DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     +DLSP ++V G
Sbjct: 932  REFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEG 990

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
               L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 991  THELSKKLVIVNGDDP---------------------------LSRQAQQNATLLFNIHL 1023

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L SK +  E RL+ +AF WLL EIE +F Q++A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1024 RSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLN 1083

Query: 544  T 546
            T
Sbjct: 1084 T 1084

[70][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
            RepID=B7PJA3_IXOSC
          Length = 1937

 Score =  140 bits (352), Expect = 8e-32
 Identities = 80/181 (44%), Positives = 111/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KEW +LK+DR+ LR  +F TG++K+ L  N++R++WNA++IF V     +DLSP ++V+G
Sbjct: 954  KEWERLKRDREALR-TIFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTDLSPLRVVQG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            VE L+ +  ++  ++                            LS  A  NATLLF+  +
Sbjct: 1013 VEELVKKLVIVPGED---------------------------HLSIQANENATLLFRSLL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            RA+L SK V  E RL+ ++F WLL EIE RF Q+    GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RATLCSKRVAEEFRLSTESFEWLLGEIETRFHQSQGQPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[71][TOP]
>UniRef100_A9QMG1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius
           dolichuroides RepID=A9QMG1_9BILA
          Length = 629

 Score =  140 bits (352), Expect = 8e-32
 Identities = 77/180 (42%), Positives = 111/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL++DR  LR +++ TGE+K  L  N++RLIWNA++IF V + +   L+P  ++RGV
Sbjct: 167 EWAQLEEDRRLLR-KIYATGESKCVLPCNLQRLIWNAQKIFHVEKREPVCLNPLNVIRGV 225

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++  D+                            +S+ AQ NATLL  + +R
Sbjct: 226 RSLSEKLIIVGGDD---------------------------RISKQAQYNATLLMNILLR 258

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K + + H+L ++AF WLL EIE RF+ A+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 259 STLCAKKMATTHKLNQEAFEWLLGEIETRFKAAIAQPGEMVGALAAQSLGEPATQMTLNT 318

[72][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
            RepID=Q7Q3C6_ANOGA
          Length = 1878

 Score =  139 bits (351), Expect = 1e-31
 Identities = 79/180 (43%), Positives = 108/180 (60%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ QL +DR+ LR ++F  G++K+ L  N++R+IWN ++IF + +   +DLSP K+++GV
Sbjct: 945  EYEQLLRDREALR-QIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPLKVIQGV 1003

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              LL R  ++   +                            LS+ A  NATLLFQ  VR
Sbjct: 1004 RDLLQRCVIVAGTD---------------------------RLSKQANENATLLFQCLVR 1036

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E RL  +AF WL+ EIE RFQQA    GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1037 STLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLGEPATQMTLNT 1096

[73][TOP]
>UniRef100_A9QMG8 RNA polymerase 2 (Fragment) n=1 Tax=rhabditoid sp. PDL15
           RepID=A9QMG8_9BILA
          Length = 587

 Score =  139 bits (351), Expect = 1e-31
 Identities = 77/180 (42%), Positives = 110/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  G++K+ L  N++RLIWNA++IF V     ++L+P +++ GV
Sbjct: 148 EWXQLEEDRXLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFHVETRKXTELNPLRVIEGV 206

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++  ++                            +S+ AQ NATLL  + +R
Sbjct: 207 RDLSKKLVIVXGED---------------------------RISKQAQYNATLLMNILLR 239

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK V  ++RL  +AF WLL EIE RFQQA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 240 STLCSKQVAEKYRLNSEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 299

[74][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score =  139 bits (350), Expect = 1e-31
 Identities = 82/180 (45%), Positives = 105/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ QL +DR+ +R+ +F+ G++  PL  NI RLIWNA+ +  +  N  S+L P +IVR V
Sbjct: 877  EYTQLVEDRNVMRNFIFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEEIVRDV 936

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              LL R  V+T ++                            LS  AQ NATLLF + VR
Sbjct: 937  NDLLSRCIVITGEDG---------------------------LSTMAQHNATLLFNILVR 969

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
              LA+K V +EHRL R AF WL+ EIE+RF+ A     EMVG  AAQSIGEPATQMTLNT
Sbjct: 970  HLLATKRVYAEHRLNRNAFRWLIGEIESRFKAAKVNPAEMVGTIAAQSIGEPATQMTLNT 1029

[75][TOP]
>UniRef100_P91819 DNA-directed RNA polymerase (Fragment) n=1 Tax=Zeldia punctata
           RepID=P91819_ZELPU
          Length = 629

 Score =  139 bits (349), Expect = 2e-31
 Identities = 82/180 (45%), Positives = 108/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  G+AK+ L  N++RLIWNA +IF V      DL+P ++V GV
Sbjct: 157 EWQQLEEDRRLLR-KIFPKGDAKVHLPCNLKRLIWNAHKIFHVDLKKPVDLNPLRVVEGV 215

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L ++  V+ S ED                           +S+ AQ NATLL  + +R
Sbjct: 216 REL-NKKLVIVSGED--------------------------RISKQAQYNATLLMNILLR 248

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK V   H+L  +AF W+L EIE RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 249 STLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSLGEPATQMTLNT 308

[76][TOP]
>UniRef100_A9QMP7 RNA polymerase 2 (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMP7_9BILA
          Length = 440

 Score =  139 bits (349), Expect = 2e-31
 Identities = 78/180 (43%), Positives = 108/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V     +DL P +++ GV
Sbjct: 119 EWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLHPLRVIEGV 177

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             +  +  ++   ED                           +S+ AQ NATLL  + VR
Sbjct: 178 RDMAKKL-IIVGGED--------------------------RISKQAQYNATLLMNILVR 210

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK +   ++L  +AF WLL E+E RFQQA+A  GEMVG  AAQS+GEPATQMTLNT
Sbjct: 211 STLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVGPLAAQSLGEPATQMTLNT 270

[77][TOP]
>UniRef100_A9QMF5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides inermis
           RepID=A9QMF5_9BILA
          Length = 630

 Score =  139 bits (349), Expect = 2e-31
 Identities = 78/180 (43%), Positives = 108/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V     +DL P +++ GV
Sbjct: 156 EWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLHPLRVIEGV 214

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             +  +  ++   ED                           +S+ AQ NATLL  + VR
Sbjct: 215 RDMAKKL-IIVGGED--------------------------RISKQAQYNATLLMNILVR 247

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK +   ++L  +AF WLL E+E RFQQA+A  GEMVG  AAQS+GEPATQMTLNT
Sbjct: 248 STLCSKKMAEHYKLNSEAFEWLLGEVETRFQQAIAQPGEMVGPLAAQSLGEPATQMTLNT 307

[78][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
          Length = 1935

 Score =  139 bits (349), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 919  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 977

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 978  VKKLSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1010

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1011 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1070

Query: 544  T 546
            T
Sbjct: 1071 T 1071

[79][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase II subunit A) (DNA-directed RNA polymerase III
            largest subunit) n=1 Tax=Equus caballus
            RepID=UPI0001796DD3
          Length = 1834

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[80][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
            isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
          Length = 1970

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[81][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
          Length = 1913

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[82][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2C
          Length = 1888

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[83][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2B
          Length = 1892

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 956  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1014

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1015 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1047

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1048 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1107

Query: 544  T 546
            T
Sbjct: 1108 T 1108

[84][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2A
          Length = 1896

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 956  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1014

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1015 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1047

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1048 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1107

Query: 544  T 546
            T
Sbjct: 1108 T 1108

[85][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B29
          Length = 1891

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 923  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 981

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 982  VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1014

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1015 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1074

Query: 544  T 546
            T
Sbjct: 1075 T 1075

[86][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B28
          Length = 1908

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 940  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 998

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 999  VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1031

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1032 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1091

Query: 544  T 546
            T
Sbjct: 1092 T 1092

[87][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 18 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B27
          Length = 1831

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[88][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 17 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B26
          Length = 1684

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 944  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1002

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1003 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1035

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1036 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1095

Query: 544  T 546
            T
Sbjct: 1096 T 1096

[89][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 16 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B25
          Length = 1752

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 944  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1002

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1003 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1035

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1036 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1095

Query: 544  T 546
            T
Sbjct: 1096 T 1096

[90][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B24
          Length = 1924

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 956  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1014

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1015 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1047

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1048 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1107

Query: 544  T 546
            T
Sbjct: 1108 T 1108

[91][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 14 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B23
          Length = 1653

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 927  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 985

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 986  VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1018

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1019 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1078

Query: 544  T 546
            T
Sbjct: 1079 T 1079

[92][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 13 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B22
          Length = 1722

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 927  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 985

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 986  VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1018

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1019 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1078

Query: 544  T 546
            T
Sbjct: 1079 T 1079

[93][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B21
          Length = 1922

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[94][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B20
          Length = 1923

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 955  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1013

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1014 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1046

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1047 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1106

Query: 544  T 546
            T
Sbjct: 1107 T 1107

[95][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 10 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1F
          Length = 1840

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 950  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1008

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1009 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1041

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1042 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1101

Query: 544  T 546
            T
Sbjct: 1102 T 1102

[96][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 9 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1E
          Length = 1851

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 950  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1008

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1009 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1041

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1042 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1101

Query: 544  T 546
            T
Sbjct: 1102 T 1102

[97][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1D
          Length = 1764

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 972  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1030

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1031 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1063

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1064 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1123

Query: 544  T 546
            T
Sbjct: 1124 T 1124

[98][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 8 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1C
          Length = 1719

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 948  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1006

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1007 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1039

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1040 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1099

Query: 544  T 546
            T
Sbjct: 1100 T 1100

[99][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 7 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1B
          Length = 1858

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 948  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1006

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1007 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1039

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1040 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1099

Query: 544  T 546
            T
Sbjct: 1100 T 1100

[100][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 5 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B19
          Length = 1693

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 940  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 998

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 999  VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1031

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1032 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1091

Query: 544  T 546
            T
Sbjct: 1092 T 1092

[101][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B17
          Length = 1788

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[102][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B16
          Length = 1922

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[103][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25C
          Length = 1968

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 956  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1014

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1015 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1047

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1048 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1107

Query: 544  T 546
            T
Sbjct: 1108 T 1108

[104][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25B
          Length = 1932

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[105][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
          Length = 1970

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[106][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
            familiaris RepID=UPI0001951285
          Length = 1969

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[107][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
          Length = 1966

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[108][TOP]
>UniRef100_O01370 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis sp.
           RepID=O01370_9BILA
          Length = 633

 Score =  138 bits (348), Expect = 2e-31
 Identities = 76/181 (41%), Positives = 111/181 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW +L+ DR  LR ++F  G+ K+ L  N++RLIWNA++IF V     ++LSP +++ G
Sbjct: 159 EEWERLEDDRRLLR-KIFPKGDKKVVLPCNLQRLIWNAQKIFKVETRKPTNLSPLRVIEG 217

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  +  +++ D+                            +S+ AQ NATLL  + +
Sbjct: 218 VRELSKKLIIVSGDD---------------------------RISQQAQYNATLLMNILL 250

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK +  ++RL ++ F WLL EIE+RFQQA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 251 RSTLCSKQMAEKYRLNQEGFEWLLGEIEHRFQQAIAQPGEMVGALAAQSLGEPATQMTLN 310

Query: 544 T 546
           T
Sbjct: 311 T 311

[109][TOP]
>UniRef100_B4YT42 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphizoa lecontei
           RepID=B4YT42_AMPLE
          Length = 562

 Score =  138 bits (348), Expect = 2e-31
 Identities = 77/175 (44%), Positives = 105/175 (60%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL KDR+ LR ++F TGE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 416 REWDQLSKDREALR-QIFPTGESKVVLPCNLQRMIWNVQKIFHINKRATTDLSPLRVIQG 474

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  ++  D+                            LS  A  NATLLFQ  V
Sbjct: 475 VRQLLQKCIIVAGDD---------------------------RLSRQANENATLLFQCLV 507

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 562

[110][TOP]
>UniRef100_A9QMH1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrobeles maximus
           RepID=A9QMH1_9BILA
          Length = 616

 Score =  138 bits (348), Expect = 2e-31
 Identities = 80/180 (44%), Positives = 108/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  GE+K+ L  N++RLIWNA++IF V      DL+P +++ GV
Sbjct: 164 EWQQLEEDRRLLR-KIFPKGESKVHLPCNLKRLIWNAQKIFHVDLRKTVDLNPVRVIEGV 222

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++ S ED                           +S+ AQ NATLL  + +R
Sbjct: 223 RELSKKL-IIVSGED--------------------------RISKQAQYNATLLMNILLR 255

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK V   H+L  +AF W+L EIE RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKQVAKVHKLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSLGEPATQMTLNT 315

[111][TOP]
>UniRef100_A9QMG7 RNA polymerase 2 (Fragment) n=1 Tax=Distolabrellus veechi
           RepID=A9QMG7_9BILA
          Length = 583

 Score =  138 bits (348), Expect = 2e-31
 Identities = 77/181 (42%), Positives = 109/181 (60%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++IF V     S L+P +++ G
Sbjct: 146 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKVETRKPSSLNPLRVIEG 204

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  +  +  ++  D+                            +S+ AQ NATLL  + V
Sbjct: 205 VREMSKKLIIVCGDD---------------------------RISKHAQYNATLLMNILV 237

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK +  ++RL  +AF WLL EIE+RFQQA+   GEMVGA AAQS+GEPATQMTLN
Sbjct: 238 RSTLCSKQMADKYRLNEEAFEWLLGEIEHRFQQAIVQPGEMVGALAAQSLGEPATQMTLN 297

Query: 544 T 546
           T
Sbjct: 298 T 298

[112][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
          Length = 1970

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[113][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
            RepID=RPB1_MOUSE
          Length = 1970

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[114][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
            RepID=RPB1_HUMAN
          Length = 1970

 Score =  138 bits (348), Expect = 2e-31
 Identities = 78/181 (43%), Positives = 112/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[115][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E658E
          Length = 1628

 Score =  138 bits (347), Expect = 3e-31
 Identities = 76/181 (41%), Positives = 110/181 (60%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++K+DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     +DLSP ++V G
Sbjct: 952  REFEKMKEDREILR-AIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEG 1010

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
               L  +  ++  D+                            LS+ AQ NATLLF +H+
Sbjct: 1011 THDLSKKLVIVNGDDP---------------------------LSKQAQQNATLLFNIHL 1043

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L SK +  E RL+ +AF WLL EIE +F  ++A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1044 RSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNHSIAHPGEMVGALAAQSLGEPATQMTLN 1103

Query: 544  T 546
            T
Sbjct: 1104 T 1104

[116][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9TK89_PHYPA
          Length = 1646

 Score =  138 bits (347), Expect = 3e-31
 Identities = 81/180 (45%), Positives = 107/180 (59%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E ++L+ DR  +  E+  TGEA  PL VN++RLIWNA++IF V     SD+ P +IV  V
Sbjct: 938  EVSKLEADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQKIFKVDFRKPSDMHPMEIVEAV 997

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R RV+  D+                           ++S  AQ NATL F   +R
Sbjct: 998  DKLQERLRVVPGDD---------------------------QISMEAQRNATLFFGCLLR 1030

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++LASK VL ++RLTR+AF W++ EIE RF  +L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 1031 STLASKRVLKDYRLTREAFDWVIGEIETRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNT 1090

[117][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
          Length = 1943

 Score =  138 bits (347), Expect = 3e-31
 Identities = 77/180 (42%), Positives = 111/180 (61%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW QL++DR  LR ++F  G+AK+ L  N++R+IWNA++IF V     +DL+P +++ GV
Sbjct: 1020 EWGQLEEDRRLLR-KIFPKGDAKIVLPCNLQRMIWNAQKIFRVELRKPTDLNPLRVIEGV 1078

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  +  V+ S ED                           +S+ AQ NATLL  + +R
Sbjct: 1079 KELSKKL-VIVSGED--------------------------RISKQAQYNATLLMNILLR 1111

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K +  +HRL  + F WL+ EIE+RF+QA+   GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1112 STLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNT 1171

[118][TOP]
>UniRef100_Q6E226 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           plicata RepID=Q6E226_9PELO
          Length = 636

 Score =  137 bits (345), Expect = 5e-31
 Identities = 77/180 (42%), Positives = 109/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V      DLSP  ++ GV
Sbjct: 164 EWAQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLIWNAQKIFKVDTRKPVDLSPLHVIDGV 222

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             +  +  +++ ++D                           +S  AQ NATLL  + +R
Sbjct: 223 REISSKLIIVSGNDD---------------------------ISRQAQYNATLLMNILLR 255

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK + +  +L  +AF WLL E+E+RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKLCTTSKLNTEAFDWLLGEVESRFNQAIAQPGEMVGALAAQSLGEPATQMTLNT 315

[119][TOP]
>UniRef100_A9QMG0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QMG0_OSCTI
          Length = 629

 Score =  137 bits (345), Expect = 5e-31
 Identities = 78/180 (43%), Positives = 109/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL++DR  LR + F  G+ K+ L  N++RLIWNA++IF V   + + L+P  ++RGV
Sbjct: 164 EWAQLEEDRRLLR-KTFPNGDNKVVLPCNLQRLIWNAQKIFHVETREVTSLNPLAVIRGV 222

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + L  +  ++   ED                           +S  AQ NATLL  + +R
Sbjct: 223 KNLSDKL-IIVGGED--------------------------RISRQAQFNATLLMNILLR 255

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK + + H+L ++AF WLL EIE RF+ A+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKMATTHKLNQEAFDWLLGEIETRFKSAIAQPGEMVGALAAQSLGEPATQMTLNT 315

[120][TOP]
>UniRef100_A9QME7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pellioditis
           mediterranea RepID=A9QME7_9PELO
          Length = 618

 Score =  137 bits (345), Expect = 5e-31
 Identities = 75/181 (41%), Positives = 109/181 (60%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL+ DR  LR ++F TG+AK+ L  N++RLIWNA++IF V     +DLSP +++ G
Sbjct: 160 EEWHQLEHDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLSPLRVIEG 218

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  +  +  ++  ++                            +S+ AQ NATLL  + +
Sbjct: 219 VRDMSEKLIIVAGED---------------------------RISKQAQYNATLLMNILL 251

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK +   ++L  +AF WLL E+E RF+QA+A  GEMVG  AAQS+GEPATQMTLN
Sbjct: 252 RSTLCSKKMAVSYKLNSEAFEWLLGEVETRFKQAIAQPGEMVGPLAAQSLGEPATQMTLN 311

Query: 544 T 546
           T
Sbjct: 312 T 312

[121][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1A
          Length = 1767

 Score =  137 bits (344), Expect = 7e-31
 Identities = 78/183 (42%), Positives = 114/183 (62%), Gaps = 2/183 (1%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAV--NIERLIWNAKRIFDVRQNDRSDLSPSKIV 177
            +E+ ++++DR+ LR  +F TG++K+P+ +  N+ R+IWNA++IF +     SDL P K+V
Sbjct: 940  REFERMREDREVLR-VIFPTGDSKVPVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVV 998

Query: 178  RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 357
             GV+ L  +  ++  D+                            LS  AQ NATLLF +
Sbjct: 999  EGVKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNI 1031

Query: 358  HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
            H+R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMT
Sbjct: 1032 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1091

Query: 538  LNT 546
            LNT
Sbjct: 1092 LNT 1094

[122][TOP]
>UniRef100_B4YT40 DNA-directed RNA polymerase (Fragment) n=1 Tax=Dineutes sublineatus
           RepID=B4YT40_9COLE
          Length = 562

 Score =  137 bits (344), Expect = 7e-31
 Identities = 76/175 (43%), Positives = 107/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL KDR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +  ++DLSP ++++G
Sbjct: 416 REWEQLVKDRETLR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAQTDLSPLRVIQG 474

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  ++  D+                            LS+ A  NATLLFQ  V
Sbjct: 475 VRDLLQKCVIVAGDD---------------------------RLSKQANENATLLFQCLV 507

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 562

[123][TOP]
>UniRef100_B4YT36 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chauliognathus
           opacus RepID=B4YT36_9COLE
          Length = 629

 Score =  137 bits (344), Expect = 7e-31
 Identities = 76/175 (43%), Positives = 108/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL+KDR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 483 REWEQLQKDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQG 541

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  ++  D+                            LS+ A  NATLLFQ  V
Sbjct: 542 VRELLKKCIIVAGDD---------------------------RLSKQANENATLLFQCLV 574

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           R++L +K V  E RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPAT
Sbjct: 575 RSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPAT 629

[124][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF13
          Length = 1932

 Score =  136 bits (343), Expect = 9e-31
 Identities = 80/181 (44%), Positives = 113/181 (62%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVDG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  V+ + ED                           LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKL-VIVNGEDP--------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[125][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF12
          Length = 1970

 Score =  136 bits (343), Expect = 9e-31
 Identities = 80/181 (44%), Positives = 113/181 (62%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL P K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVDG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  V+ + ED                           LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKL-VIVNGEDP--------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[126][TOP]
>UniRef100_A9QMF1 RNA polymerase 2 (Fragment) n=1 Tax=Pelodera punctata
           RepID=A9QMF1_9PELO
          Length = 605

 Score =  136 bits (343), Expect = 9e-31
 Identities = 77/180 (42%), Positives = 107/180 (59%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++IF V     S L+P K+V GV
Sbjct: 141 EWQQLEEDRRLLR-KIFPKGDHKVVLPCNLQRLIWNAQKIFKVETRKASSLNPLKVVSGV 199

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++  ++                            +S+ AQ NATLL  + +R
Sbjct: 200 RELSKKLIIVCGED---------------------------RISKQAQYNATLLMNILIR 232

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK +  ++RL  + F WLL EIE+RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 233 STLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAVAQPGEMVGALAAQSLGEPATQMTLNT 292

[127][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            elegans RepID=RPB1_CAEEL
          Length = 1852

 Score =  136 bits (343), Expect = 9e-31
 Identities = 77/180 (42%), Positives = 112/180 (62%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V      +LSP  ++ GV
Sbjct: 945  EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGV 1003

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              L  +  +++ ++                           E+S+ AQ NATLL  + +R
Sbjct: 1004 RELSKKLIIVSGND---------------------------EISKQAQYNATLLMNILLR 1036

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K + ++ +L  +AF WLL EIE+RFQQA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1037 STLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 1096

[128][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score =  136 bits (342), Expect = 1e-30
 Identities = 79/180 (43%), Positives = 107/180 (59%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E ++L+ DR  +  E+  TGE+  PL VN++RLIWNA++IF V     SD+ P +IV  V
Sbjct: 953  EVSKLEADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQKIFKVDLRKSSDMHPMEIVEAV 1012

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            E L  R RV+  ++                           ++S  AQ NATL F   +R
Sbjct: 1013 ENLQERLRVVPGND---------------------------QISMEAQRNATLFFGCLLR 1045

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++LASK VL ++RLTR+AF W++ E+E RF  +L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 1046 STLASKRVLKDYRLTREAFEWVIGEVETRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNT 1105

[129][TOP]
>UniRef100_Q6E233 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis remanei
           RepID=Q6E233_CAERE
          Length = 611

 Score =  136 bits (342), Expect = 1e-30
 Identities = 76/180 (42%), Positives = 111/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V      +LSP  ++ GV
Sbjct: 147 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGV 205

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  +++ ++                           E+S+ AQ NATLL  + +R
Sbjct: 206 RELSKKLIIVSGND---------------------------EISKQAQYNATLLMNILLR 238

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K + +  +L  +AF WLL E+E+RFQQA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 239 STLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 298

[130][TOP]
>UniRef100_Q6E231 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis brenneri
           RepID=Q6E231_CAEBE
          Length = 596

 Score =  136 bits (342), Expect = 1e-30
 Identities = 77/180 (42%), Positives = 110/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V      +LSP  ++ GV
Sbjct: 139 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGV 197

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  +++ ++                           E+S+ AQ NATLL  + +R
Sbjct: 198 RELSKKLIIVSGND---------------------------EISKQAQYNATLLMNILLR 230

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K + +  +L  +AF WLL EIE RFQQA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 231 STLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 290

[131][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            briggsae RepID=RPB1_CAEBR
          Length = 1853

 Score =  136 bits (342), Expect = 1e-30
 Identities = 77/180 (42%), Positives = 110/180 (61%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V      +LSP  ++ GV
Sbjct: 949  EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGV 1007

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              L  +  +++ ++                           E+S+ AQ NATLL  + +R
Sbjct: 1008 RELSKKLIIVSGND---------------------------EISKQAQYNATLLMNILLR 1040

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K + +  +L  +AF WLL EIE RFQQA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1041 STLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 1100

[132][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
            RepID=O35559_CRIGR
          Length = 1970

 Score =  135 bits (340), Expect = 2e-30
 Identities = 77/181 (42%), Positives = 111/181 (61%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ ++++DR+ LR  +F TG++K+ L  N+ R+IWNA++IF +     SDL   K+V G
Sbjct: 954  REFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHSIKVVEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  ++  D+                            LS  AQ NATLLF +H+
Sbjct: 1013 VKELSKKLVIVNGDDP---------------------------LSRQAQENATLLFNIHL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L S+ +  E RL+ +AF WLL EIE++F QA+A  GEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[133][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
            RepID=C3ZES3_BRAFL
          Length = 1934

 Score =  135 bits (340), Expect = 2e-30
 Identities = 79/180 (43%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ QL+ DRD LR  V +TG+AK+ L  N+ R+IWNA++IF V     +DL P K+V GV
Sbjct: 951  EFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQKIFHVNTRAPTDLHPIKVVEGV 1009

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              L  +  ++  D+   + A                           Q NAT+LF   +R
Sbjct: 1010 RDLSRKLVIVKGDDPISIQA---------------------------QANATILFNTLLR 1042

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L ++ VL E RL+ +AF WLL EIE+RF QA+   GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1043 STLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQSLGEPATQMTLNT 1102

[134][TOP]
>UniRef100_B4YT54 DNA-directed RNA polymerase (Fragment) n=2 Tax=Odontium subgenus
           complex RepID=B4YT54_9CARA
          Length = 473

 Score =  135 bits (340), Expect = 2e-30
 Identities = 77/175 (44%), Positives = 108/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 327 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 385

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 386 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 418

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 419 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 473

[135][TOP]
>UniRef100_B4YT49 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bembidion
           mandibulare RepID=B4YT49_9CARA
          Length = 562

 Score =  135 bits (340), Expect = 2e-30
 Identities = 77/175 (44%), Positives = 108/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 416 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 474

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 475 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 507

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562

[136][TOP]
>UniRef100_B4YT48 DNA-directed RNA polymerase (Fragment) n=2 Tax=Notaphus
           RepID=B4YT48_9CARA
          Length = 562

 Score =  135 bits (340), Expect = 2e-30
 Identities = 77/175 (44%), Positives = 108/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 416 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 474

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 475 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 507

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562

[137][TOP]
>UniRef100_B4YT46 DNA-directed RNA polymerase (Fragment) n=3 Tax=Bembidion
           RepID=B4YT46_9CARA
          Length = 562

 Score =  135 bits (340), Expect = 2e-30
 Identities = 77/175 (44%), Positives = 108/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 416 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 474

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 475 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 507

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562

[138][TOP]
>UniRef100_B4YT44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Asaphidion yukonense
           RepID=B4YT44_9CARA
          Length = 562

 Score =  135 bits (340), Expect = 2e-30
 Identities = 77/175 (44%), Positives = 108/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 416 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 474

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 475 VRDLLQKC-VIVAGED--------------------------RLSKLANENATLLFQCLV 507

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 562

[139][TOP]
>UniRef100_B3FA71 RNA polymerase II largest subunit (Fragment) n=2 Tax=Pseudoperyphus
           RepID=B3FA71_9CARA
          Length = 227

 Score =  135 bits (340), Expect = 2e-30
 Identities = 77/175 (44%), Positives = 108/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 81  REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 172

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227

[140][TOP]
>UniRef100_B3FA50 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           coxendix RepID=B3FA50_9CARA
          Length = 225

 Score =  135 bits (340), Expect = 2e-30
 Identities = 77/175 (44%), Positives = 108/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 79  REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 137

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 138 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 170

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 171 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 225

[141][TOP]
>UniRef100_B3FA43 RNA polymerase II largest subunit (Fragment) n=16 Tax=Bembidion
           RepID=B3FA43_9CARA
          Length = 227

 Score =  135 bits (340), Expect = 2e-30
 Identities = 77/175 (44%), Positives = 108/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 81  REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 172

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227

[142][TOP]
>UniRef100_A9QMF3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditoides regina
           RepID=A9QMF3_9BILA
          Length = 626

 Score =  135 bits (340), Expect = 2e-30
 Identities = 74/180 (41%), Positives = 108/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  G++K+ L  N++RLIWNA++IF V     + L+P +++ GV
Sbjct: 160 EWLQLEEDRRLLR-KIFPKGDSKVVLPCNLQRLIWNAQKIFKVETRKVTALNPLRVIEGV 218

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             +  +  +++ D+                            +S+ AQ NATLL  + +R
Sbjct: 219 RNVSKKLVIVSGDD---------------------------RISKQAQYNATLLMNILIR 251

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK +  +H+L  + F WLL EIE RFQ A+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 252 STLCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVGALAAQSLGEPATQMTLNT 311

[143][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
            RepID=UPI000186501C
          Length = 1956

 Score =  135 bits (339), Expect = 3e-30
 Identities = 79/180 (43%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ QL+ DRD LR  V +TG+AK+ L  N+ R+IWNA++IF V     +DL P K+V GV
Sbjct: 951  EFEQLRVDRDVLR-SVNQTGDAKVALPCNLARIIWNAQKIFHVNTRAPTDLHPIKVVEGV 1009

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              L  +  ++  D+   + A                           Q NAT+LF   +R
Sbjct: 1010 RDLSKKLVIVKGDDPISIQA---------------------------QANATILFNTLLR 1042

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L ++ VL E RL+ +AF WLL EIE+RF QA+   GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1043 STLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPGEMVGALAAQSLGEPATQMTLNT 1102

[144][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48673
          Length = 1880

 Score =  135 bits (339), Expect = 3e-30
 Identities = 81/181 (44%), Positives = 110/181 (60%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KE+ QLK+DR+ LR ++F  GE+K+ L  N++R+IWNA++IF +     S+L PS ++ G
Sbjct: 948  KEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVLEG 1006

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L  +  V+   EDA                          +S  AQ NAT L    +
Sbjct: 1007 VRDLKKKL-VIVKGEDA--------------------------ISRQAQENATYLMNCLI 1039

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L+S  V  EH+L+ ++F WLL EIE RF Q+LA AGEMVGA AAQS+GEPATQMTLN
Sbjct: 1040 RSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVGALAAQSLGEPATQMTLN 1099

Query: 544  T 546
            T
Sbjct: 1100 T 1100

[145][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48672
          Length = 1913

 Score =  135 bits (339), Expect = 3e-30
 Identities = 81/181 (44%), Positives = 110/181 (60%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KE+ QLK+DR+ LR ++F  GE+K+ L  N++R+IWNA++IF +     S+L PS ++ G
Sbjct: 954  KEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVLEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L  +  V+   EDA                          +S  AQ NAT L    +
Sbjct: 1013 VRDLKKKL-VIVKGEDA--------------------------ISRQAQENATYLMNCLI 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L+S  V  EH+L+ ++F WLL EIE RF Q+LA AGEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[146][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48671
          Length = 1921

 Score =  135 bits (339), Expect = 3e-30
 Identities = 81/181 (44%), Positives = 110/181 (60%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KE+ QLK+DR+ LR ++F  GE+K+ L  N++R+IWNA++IF +     S+L PS ++ G
Sbjct: 954  KEYDQLKEDREVLR-KIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVLEG 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L  +  V+   EDA                          +S  AQ NAT L    +
Sbjct: 1013 VRDLKKKL-VIVKGEDA--------------------------ISRQAQENATYLMNCLI 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R++L+S  V  EH+L+ ++F WLL EIE RF Q+LA AGEMVGA AAQS+GEPATQMTLN
Sbjct: 1046 RSTLSSTRVAQEHKLSPESFEWLLGEIETRFNQSLAMAGEMVGALAAQSLGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[147][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SXC0_RICCO
          Length = 1855

 Score =  135 bits (339), Expect = 3e-30
 Identities = 78/180 (43%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L+ DR  L  E+  TG++  PL VN+ RLIWNA++ F V +   SD+ P + V  V
Sbjct: 950  EVQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAV 1009

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D+   V+A                           Q NATL F + +R
Sbjct: 1010 DKLQERLKVVPGDDPLSVEA---------------------------QKNATLFFGILLR 1042

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++LASK VL ++RLTR+AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 1043 STLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1102

[148][TOP]
>UniRef100_Q6E227 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis japonica
           RepID=Q6E227_CAEJA
          Length = 608

 Score =  135 bits (339), Expect = 3e-30
 Identities = 77/180 (42%), Positives = 109/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V      +LSP  ++ GV
Sbjct: 147 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGV 205

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++  ++                           E+S+ AQ NATLL  + +R
Sbjct: 206 RELSKKLIIVCGND---------------------------EISKQAQYNATLLMNILLR 238

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K + +  +L  +AF WLL EIE RFQQA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 239 STLCTKKMCTTAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNT 298

[149][TOP]
>UniRef100_Q6E225 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           SB341 RepID=Q6E225_9PELO
          Length = 622

 Score =  135 bits (339), Expect = 3e-30
 Identities = 75/180 (41%), Positives = 110/180 (61%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F TG+AK+ L  N++RLIWNA++IF V     ++LSP  ++ GV
Sbjct: 164 EWNQLEEDRRLLR-KIFPTGDAKVVLPCNLQRLIWNAQKIFKVDLRKPTNLSPLHVIEGV 222

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             +  +  +++  +D                           +S+ AQ NATLL  + +R
Sbjct: 223 REVSKKLIIVSGSDD---------------------------ISKQAQYNATLLMNILLR 255

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK + +  +L  +AF WLL E+E+RF Q++A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKMATSAKLNTEAFDWLLGEVESRFMQSIAQPGEMVGALAAQSLGEPATQMTLNT 315

[150][TOP]
>UniRef100_B4YT45 RNA polymerase II large subunit (Fragment) n=1 Tax=Sirdenus grayii
           RepID=B4YT45_9CARA
          Length = 227

 Score =  135 bits (339), Expect = 3e-30
 Identities = 77/175 (44%), Positives = 107/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 81  REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 172

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 227

[151][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99368_SOYBN
          Length = 977

 Score =  134 bits (338), Expect = 3e-30
 Identities = 80/180 (44%), Positives = 108/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           E  +L+ DR  L  E+   G+  LPL VN++RLIWNA++ F V     SD+ P +IV  +
Sbjct: 142 EVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAI 201

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + L  R +V+   EDA                          LS+ AQ NATLLF + +R
Sbjct: 202 DKLQERLKVVPG-EDA--------------------------LSQEAQKNATLLFNILLR 234

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++ ASK VL E+RL+R++F W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 235 STFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQSIGEPATQMTLNT 294

[152][TOP]
>UniRef100_A9QMF8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhabditis sp. SB347
           RepID=A9QMF8_9BILA
          Length = 621

 Score =  134 bits (338), Expect = 3e-30
 Identities = 76/180 (42%), Positives = 108/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F TG+AK+ L  N++RLIWNA++IF V     +DL+P +++ GV
Sbjct: 164 EWGQLEEDRRLLR-KIFPTGDAKIVLPCNLQRLIWNAQKIFHVETRKPTDLNPIRVIEGV 222

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++ S ED                           +S+ AQ NATLL  + +R
Sbjct: 223 RELSSKL-IIVSGED--------------------------RISKQAQYNATLLMNILIR 255

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK + S ++L  +AF WLL E+E RF+QA+A      GA AAQS+GEPATQMTLNT
Sbjct: 256 STLCSKKMASTYKLNSEAFEWLLGEVETRFKQAIAXXXXXXGALAAQSLGEPATQMTLNT 315

[153][TOP]
>UniRef100_B4YT39 RNA polymerase II large subunit (Fragment) n=1 Tax=Pterostichus
           melanarius RepID=B4YT39_PTEME
          Length = 227

 Score =  134 bits (337), Expect = 4e-30
 Identities = 77/175 (44%), Positives = 107/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 81  REWEQLTRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 140 VRDLLKKC-VIVAGED--------------------------RLSKLANENATLLFQCLV 172

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 227

[154][TOP]
>UniRef100_B4YT37 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaphinotus petersi
           RepID=B4YT37_9CARA
          Length = 369

 Score =  134 bits (337), Expect = 4e-30
 Identities = 75/175 (42%), Positives = 105/175 (60%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 223 REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPIRVIQG 281

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  ++   +                            LSE A  NATLLFQ  V
Sbjct: 282 VRDLLQKCVIVAGKD---------------------------RLSEQANENATLLFQCLV 314

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA AAQS+GEPAT
Sbjct: 315 RATLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLGEPAT 369

[155][TOP]
>UniRef100_A9QMQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis sp.
           JU727 RepID=A9QMQ9_9PELO
          Length = 620

 Score =  134 bits (337), Expect = 4e-30
 Identities = 76/180 (42%), Positives = 109/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW+QL++DR  LR ++F  G+AK+ L  N++RLIWNA++IF V      +LSP  ++ GV
Sbjct: 164 EWSQLEEDRRLLR-KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGV 222

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  +++ ++                           E+S+ AQ NATLL  + +R
Sbjct: 223 RELSKKLIIVSGND---------------------------EISKQAQYNATLLMNILLR 255

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K + +  +L  +AF WLL EIE RFQ A+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 256 STLCTKKMCTSAKLNTEAFDWLLGEIETRFQSAIAQPGEMVGALAAQSLGEPATQMTLNT 315

[156][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score =  134 bits (336), Expect = 6e-30
 Identities = 75/180 (41%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA++ F +     SD+ P +IV  +
Sbjct: 951  EVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAI 1010

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D+D  ++A                           Q NATL F + +R
Sbjct: 1011 DKLQERLKVVPGDDDISIEA---------------------------QKNATLFFNILLR 1043

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 1044 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1103

[157][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q5WMZ9_ORYSJ
          Length = 1741

 Score =  134 bits (336), Expect = 6e-30
 Identities = 75/180 (41%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA++ F +     SD+ P +IV  +
Sbjct: 898  EVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAI 957

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D+D  ++A                           Q NATL F + +R
Sbjct: 958  DKLQERLKVVPGDDDISIEA---------------------------QKNATLFFNILLR 990

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 991  STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1050

[158][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q0DKN9_ORYSJ
          Length = 1834

 Score =  134 bits (336), Expect = 6e-30
 Identities = 75/180 (41%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA++ F +     SD+ P +IV  +
Sbjct: 951  EVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAI 1010

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D+D  ++A                           Q NATL F + +R
Sbjct: 1011 DKLQERLKVVPGDDDISIEA---------------------------QKNATLFFNILLR 1043

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 1044 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1103

[159][TOP]
>UniRef100_Q6E232 RNA polymersae 2 (Fragment) n=1 Tax=Caenorhabditis sp. PS1010
           RepID=Q6E232_9PELO
          Length = 601

 Score =  134 bits (336), Expect = 6e-30
 Identities = 76/180 (42%), Positives = 108/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL +DR  LR ++F  G+AK+ L  N++RL+WNA++IF V      +LSP  ++ GV
Sbjct: 147 EWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDTRKPVNLSPLHVIDGV 205

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++  ++D                           +S+ AQ NATLL  + +R
Sbjct: 206 RELSKKLIIVCGNDD---------------------------ISKQAQYNATLLMNILLR 238

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K + +  +L  +AF WLL EIE+RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 239 STLCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMVGALAAQSLGEPATQMTLNT 298

[160][TOP]
>UniRef100_O01376 DNA-directed RNA polymerase (Fragment) n=1 Tax=unidentified
           nematode RepID=O01376_9BILA
          Length = 633

 Score =  134 bits (336), Expect = 6e-30
 Identities = 76/180 (42%), Positives = 108/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EWAQL +DR  LR ++F  G+AK+ L  N++RL+WNA++IF V      +LSP  ++ GV
Sbjct: 160 EWAQLSEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDTRKPVNLSPLHVIDGV 218

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++  ++D                           +S+ AQ NATLL  + +R
Sbjct: 219 RELSKKLIIVCGNDD---------------------------ISKQAQYNATLLMNILLR 251

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K + +  +L  +AF WLL EIE+RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 252 SALCTKKMCTSSKLNTEAFDWLLGEIESRFMQAIAQPGEMVGALAAQSLGEPATQMTLNT 311

[161][TOP]
>UniRef100_A9QMG6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teratorhabditis
           palmarum RepID=A9QMG6_9BILA
          Length = 633

 Score =  134 bits (336), Expect = 6e-30
 Identities = 77/181 (42%), Positives = 108/181 (59%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL++DR  LR ++F  G+ K+ L  N++RLIWNA++IF +     +DLSP +++ G
Sbjct: 163 EEWQQLEEDRRLLR-KIFPKGDNKVVLPCNLQRLIWNAQKIFKIETRKVTDLSPVRVIEG 221

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           +  L  +  V+ S ED                           +S+ AQ NATLL  + +
Sbjct: 222 IRELSKKL-VIVSGED--------------------------RISKQAQYNATLLMNILI 254

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK V S H+L  +AF WLL EIE+RF+QA+A      GA AAQS+GEPATQMTLN
Sbjct: 255 RSTLCSKRVASMHKLNNEAFDWLLGEIEHRFKQAIAXXXXXXGALAAQSLGEPATQMTLN 314

Query: 544 T 546
           T
Sbjct: 315 T 315

[162][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase n=1 Tax=Vitis
            vinifera RepID=UPI0001985649
          Length = 1848

 Score =  133 bits (335), Expect = 7e-30
 Identities = 80/180 (44%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA++ F V     SD+ P +IV  V
Sbjct: 950  EVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAV 1009

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D     D I+ E                      AQ NATL F + +R
Sbjct: 1010 DKLQERLKVVPGD-----DLISME----------------------AQKNATLFFNILLR 1042

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++ ASK VL E+RLTR+AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 1043 STFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1102

[163][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7NVN7_VITVI
          Length = 1010

 Score =  133 bits (335), Expect = 7e-30
 Identities = 80/180 (44%), Positives = 106/180 (58%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA++ F V     SD+ P +IV  V
Sbjct: 187 EVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAV 246

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + L  R +V+  D     D I+ E                      AQ NATL F + +R
Sbjct: 247 DKLQERLKVVPGD-----DLISME----------------------AQKNATLFFNILLR 279

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++ ASK VL E+RLTR+AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 280 STFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 339

[164][TOP]
>UniRef100_B3FA52 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           levettei RepID=B3FA52_9CARA
          Length = 226

 Score =  133 bits (335), Expect = 7e-30
 Identities = 76/175 (43%), Positives = 107/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 80  REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 138

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+    NATLLFQ  V
Sbjct: 139 VRDLLQKC-VIVAGED--------------------------RLSKQXNENATLLFQCLV 171

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 172 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 226

[165][TOP]
>UniRef100_B3FA46 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           bifossulatum RepID=B3FA46_9CARA
          Length = 227

 Score =  133 bits (335), Expect = 7e-30
 Identities = 76/175 (43%), Positives = 107/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 81  REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+    NATLLFQ  V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQXNENATLLFQCLV 172

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227

[166][TOP]
>UniRef100_B3FA44 RNA polymerase II largest subunit (Fragment) n=3 Tax=Odontium
           subgenus complex RepID=B3FA44_9CARA
          Length = 227

 Score =  133 bits (334), Expect = 1e-29
 Identities = 76/175 (43%), Positives = 107/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           + W QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 81  RXWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 172

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227

[167][TOP]
>UniRef100_O04144 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spirogyra sp.
           RepID=O04144_9VIRI
          Length = 613

 Score =  132 bits (333), Expect = 1e-29
 Identities = 78/180 (43%), Positives = 107/180 (59%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           E  QL++DR  L  E+  TG++  PL VNI+RLIWNA++IF +     SD++P  +V G+
Sbjct: 460 EVLQLEQDRRTLGLEIAPTGDSSWPLPVNIKRLIWNAQKIFKIDLRKPSDMNPMDVVDGM 519

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + L  R +V+  D     D I+RE                      AQ NATL F   +R
Sbjct: 520 DKLQERLKVVVGD-----DHISRE----------------------AQKNATLFFNCLLR 552

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++++SK VL ++RL  +AF W++ EIE RF Q+    GEM+G  AAQSIGEPATQMTLNT
Sbjct: 553 STMSSKQVLKDYRLNMEAFQWVIGEIEARFLQSQVAPGEMIGCVAAQSIGEPATQMTLNT 612

[168][TOP]
>UniRef100_Q2N1B5 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Platynereis dumerilii RepID=Q2N1B5_PLADU
          Length = 248

 Score =  132 bits (333), Expect = 1e-29
 Identities = 71/180 (39%), Positives = 104/180 (57%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL  DR+ LR  +F TG+AK+ L  N+ RLIWNA++IF +     +DL P K+V G+
Sbjct: 97  EWEQLMADRERLRG-IFPTGDAKIVLPCNLNRLIWNAQKIFRINIRKPTDLHPVKVVEGI 155

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++  ++   +DA                            +NAT+L  + +R
Sbjct: 156 RELSKKFLIVKGEDKLSIDA---------------------------NINATMLMNILIR 188

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           + L ++ ++ + RL+ +AF WLL E+E+RF QA+   GEMVG  AAQS+GEPATQMTLNT
Sbjct: 189 SRLCARTIIEDDRLSSEAFEWLLGEVESRFNQAMVTPGEMVGPLAAQSLGEPATQMTLNT 248

[169][TOP]
>UniRef100_B4YT43 DNA-directed RNA polymerase (Fragment) n=1 Tax=Laccophilus pictus
           RepID=B4YT43_9DYTI
          Length = 562

 Score =  132 bits (333), Expect = 1e-29
 Identities = 75/174 (43%), Positives = 105/174 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL+KDR+ LR ++F +GE+ + L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 417 EWDQLQKDREALR-QIFPSGESNVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGV 475

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             LL R  ++   +                            LS  A  NATLLFQ  VR
Sbjct: 476 RELLQRCIIVAGTD---------------------------RLSTLANDNATLLFQCLVR 508

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           ++L +K V  E+RL+ +AF WL+ EIE RFQQA A  GEMVGA AAQS+GEPAT
Sbjct: 509 STLCTKYVSEEYRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAAQSLGEPAT 562

[170][TOP]
>UniRef100_B3FA45 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           balli RepID=B3FA45_9CARA
          Length = 220

 Score =  132 bits (333), Expect = 1e-29
 Identities = 76/175 (43%), Positives = 107/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL +DR+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 74  REWEQLSRDREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 132

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 133 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 165

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +A  WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 166 RATLCTKCVSEEFRLSTEAXEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 220

[171][TOP]
>UniRef100_B3FA42 RNA polymerase II largest subunit (Fragment) n=1 Tax=Bembidion
           californicum RepID=B3FA42_9CARA
          Length = 227

 Score =  132 bits (332), Expect = 2e-29
 Identities = 75/175 (42%), Positives = 107/175 (61%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           + W QL ++R+ LR ++F +GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 81  RXWEQLSRBREALR-QIFPSGESKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPIRVIQG 139

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  V+ + ED                           LS+ A  NATLLFQ  V
Sbjct: 140 VRDLLQKC-VIVAGED--------------------------RLSKQANENATLLFQCLV 172

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA +  GEMVGA AAQS+GEPAT
Sbjct: 173 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQSAPGEMVGALAAQSLGEPAT 227

[172][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5YGY9_SORBI
          Length = 1857

 Score =  132 bits (331), Expect = 2e-29
 Identities = 75/180 (41%), Positives = 105/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA++ F +     SD+ P +IV  V
Sbjct: 949  EVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAV 1008

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D+   ++A                           Q NATL F + +R
Sbjct: 1009 DKLQERLKVVPGDDPMSIEA---------------------------QKNATLFFNILLR 1041

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 1042 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1101

[173][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=B9FZ51_ORYSJ
          Length = 1526

 Score =  132 bits (331), Expect = 2e-29
 Identities = 74/180 (41%), Positives = 105/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA++ F +     SD+ P +IV  +
Sbjct: 621  EVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAI 680

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D+   ++A                           Q NATL F + +R
Sbjct: 681  DKLQERLKVVPGDDAMSIEA---------------------------QKNATLFFNILLR 713

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 714  STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 773

[174][TOP]
>UniRef100_B8BAW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
            RepID=B8BAW1_ORYSI
          Length = 1449

 Score =  132 bits (331), Expect = 2e-29
 Identities = 74/180 (41%), Positives = 105/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L+ DR  L  E+  TG+   P+ VN++RLIWNA++ F +     SD+ P +IV  +
Sbjct: 920  EVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAI 979

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D+   ++A                           Q NATL F + +R
Sbjct: 980  DKLQERLKVVPGDDAMSIEA---------------------------QKNATLFFNILLR 1012

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++ ASK VL E+RLT++AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 1013 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1072

[175][TOP]
>UniRef100_Q6E223 RNA polymerase 2 (Fragment) n=1 Tax=Caenorhabditis sp. DF5070
           RepID=Q6E223_9PELO
          Length = 606

 Score =  132 bits (331), Expect = 2e-29
 Identities = 74/180 (41%), Positives = 107/180 (59%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  G+AK+ L  N++RL+WNA++IF V      +LSP  ++ GV
Sbjct: 147 EWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDMRKPVNLSPLHVIDGV 205

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++   +D                           +S+ AQ NATLL  + +R
Sbjct: 206 RELSKKLVIVGGSDD---------------------------ISKQAQYNATLLMNILLR 238

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K + +  +L  +AF WLL E+E+RF QA+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 239 STLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMVGALAAQSLGEPATQMTLNT 298

[176][TOP]
>UniRef100_Q6JTX1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Isohypsibius
           elegans RepID=Q6JTX1_9BILA
          Length = 304

 Score =  131 bits (330), Expect = 3e-29
 Identities = 72/181 (39%), Positives = 110/181 (60%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +E+ Q+K+DR+ +R ++F TG++++ L  N++R++WNA++IF ++    +DL P ++V G
Sbjct: 85  QEFEQMKRDREIIR-KIFPTGDSRVVLPCNLQRMVWNAQKIFHIKGRGTTDLHPVRVVEG 143

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           +  L+ +  V+   ED                           LS  AQ NAT+L    +
Sbjct: 144 LNELMKKL-VIVKGED--------------------------RLSREAQENATILMNTML 176

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L SK +  E+ L  +AF WLL EIE+RF Q++   GEMVGA AAQS+GEPATQMTLN
Sbjct: 177 RSTLCSKRMAEEYHLNTEAFEWLLGEIESRFAQSMVQPGEMVGALAAQSLGEPATQMTLN 236

Query: 544 T 546
           T
Sbjct: 237 T 237

[177][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8Q5I6_MALGO
          Length = 1607

 Score =  131 bits (329), Expect = 4e-29
 Identities = 77/180 (42%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ QL+ DR  LR EVF+T      L +NI RL+ NA++IF +     SDLSP +IV G+
Sbjct: 736  EFEQLEADRKTLRTEVFQTDRVDTYLPLNIARLVLNAQQIFHIDPRKPSDLSPFEIVDGL 795

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + +L+   V+  D+                           ++S   Q NATLLF++H+R
Sbjct: 796  KRVLNNLLVVRGDD---------------------------KISRVMQENATLLFKIHLR 828

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            + L SK V+  H LTR+A+ W+L EIE +F +++A  GEM G  AAQSIGEPATQMTLNT
Sbjct: 829  SFLCSKQVIEVHHLTREAWEWVLGEIEGQFARSVAQPGEMCGTLAAQSIGEPATQMTLNT 888

[178][TOP]
>UniRef100_Q1L5Y7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
            RepID=Q1L5Y7_ANTMA
          Length = 780

 Score =  130 bits (328), Expect = 5e-29
 Identities = 80/180 (44%), Positives = 104/180 (57%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L+ DR  L   +  TG+   PL VNI RL+ NA++ F V     SD+ P +IV  V
Sbjct: 627  EVQKLEADRFQLGTGIATTGDNSWPLPVNIRRLVLNAQKTFKVDFRRPSDMHPMEIVEAV 686

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D+                            LS  AQ NATL F + +R
Sbjct: 687  DKLQERLKVVVGDD---------------------------YLSMEAQKNATLFFNILLR 719

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++LASK VL E+RLTR+AF W++ EIE+RF Q+L  AGEM+G  AAQSIGEPATQMTLNT
Sbjct: 720  SALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAGEMIGCVAAQSIGEPATQMTLNT 779

[179][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
            thaliana RepID=RPB1_ARATH
          Length = 1840

 Score =  130 bits (328), Expect = 5e-29
 Identities = 77/180 (42%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+++L+ DR  L  E+   G++  PL VNI+R IWNA++ F +     SD+ P +IV  V
Sbjct: 952  EYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAV 1011

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R  V+  D+                            LS  AQ NATL F + +R
Sbjct: 1012 DKLQERLLVVPGDD---------------------------ALSVEAQKNATLFFNILLR 1044

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++LASK VL E++L+R+AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 1045 STLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1104

[180][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score =  130 bits (327), Expect = 6e-29
 Identities = 77/181 (42%), Positives = 105/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL  DR  LR EVF  G+   PL VNI R++ N++RIF+V ++  SDL+  +IV G
Sbjct: 934  EEYNQLLTDRRLLREEVFTNGDHNWPLPVNIRRVVQNSQRIFNVDKSKVSDLTIPEIVEG 993

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  R  ++  D                             L++ AQ NAT+LFQ  V
Sbjct: 994  VQSLCKRLTIVRGDSS---------------------------LAKEAQENATMLFQCLV 1026

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+   +K V+ E+RL R AF W++ EIE +F +++   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1027 RSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVGVIAAQSIGEPATQMTLN 1086

Query: 544  T 546
            T
Sbjct: 1087 T 1087

[181][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5Y387_SORBI
          Length = 1874

 Score =  130 bits (326), Expect = 8e-29
 Identities = 78/177 (44%), Positives = 102/177 (57%)
 Frame = +1

Query: 16   QLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELL 195
            +L+ DR  L  E+   G    PL VN++RLIWNA++ F +     SD+ P +IV  ++ L
Sbjct: 953  KLEADRFQLGTEIATNGSHTWPLPVNLKRLIWNAQKTFKIDIRTCSDMHPIEIVEAIDKL 1012

Query: 196  LHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASL 375
              R +V+  D     DAI+ E                      AQ NATL F +H+RA+ 
Sbjct: 1013 QERLKVVPGD-----DAISIE----------------------AQKNATLFFNIHLRATF 1045

Query: 376  ASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ASK VL E+RLTR+AF W++ EI  RF Q+L    EM+G  AAQSIGEPATQMTLNT
Sbjct: 1046 ASKRVLREYRLTREAFEWIIDEIVWRFSQSLVAPSEMIGCVAAQSIGEPATQMTLNT 1102

[182][TOP]
>UniRef100_Q6E224 DNA-directed RNA polymerase (Fragment) n=1 Tax=Caenorhabditis
           drosophilae RepID=Q6E224_9PELO
          Length = 633

 Score =  129 bits (325), Expect = 1e-28
 Identities = 73/180 (40%), Positives = 106/180 (58%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR  LR ++F  G+AK+ L  N++RL+WNA++IF V      +LSP  ++ GV
Sbjct: 163 EWTQLEEDRRLLR-KIFPKGDAKIVLPCNLQRLMWNAQKIFKVDMRKPVNLSPLHVIDGV 221

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++   +D                           +S+ AQ NATLL  + +R
Sbjct: 222 RELSKKLVIVGGSDD---------------------------ISKQAQYNATLLMNILLR 254

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K + +  +L  +AF WLL E+E+RF QA+A  GEMVGA AAQS+GEPA QMTLNT
Sbjct: 255 STLCTKKLCTSSKLNTEAFDWLLGEVESRFMQAIAQPGEMVGALAAQSLGEPAPQMTLNT 314

[183][TOP]
>UniRef100_A8BDP3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Priapulus
           caudatus RepID=A8BDP3_PRICU
          Length = 434

 Score =  129 bits (325), Expect = 1e-28
 Identities = 73/180 (40%), Positives = 105/180 (58%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL KDR  +R  VF +G++++ L  N++R+IWNA++IF +     SDL P +++ GV
Sbjct: 95  EWDQLXKDRXVIR-TVFPSGDSRVVLPCNLQRMIWNAQKIFHINTRSPSDLHPLRVIEGV 153

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  ++  ++                            LS+ AQ NATL     +R
Sbjct: 154 RDLSKKLIIVEGED---------------------------RLSKQAQENATLNINAMLR 186

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L +K V  E++LT ++F WLL E+E+RFQ A A  GEMVG  AAQS+GEPATQMTLNT
Sbjct: 187 STLCTKRVAEEYKLTTESFEWLLGEVESRFQHAQAQPGEMVGPLAAQSLGEPATQMTLNT 246

[184][TOP]
>UniRef100_A8BDP1 RNA polymerase II largest subunit (Fragment) n=1 Tax=Paragordius
           varius RepID=A8BDP1_PARVA
          Length = 467

 Score =  129 bits (325), Expect = 1e-28
 Identities = 71/181 (39%), Positives = 109/181 (60%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW ++K+D+  LR ++F TG++K+ L  N++R+IWNA++IF +     SDL P K+VRG
Sbjct: 94  REWERIKEDQTLLR-QIFPTGDSKVVLPCNLQRIIWNAQKIFRINPRLPSDLHPLKVVRG 152

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V+ L  +  V+                           + +  +S+ AQL+AT L    +
Sbjct: 153 VQELSEKLIVV---------------------------KGVDRISQRAQLDATFLMNALI 185

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L ++ V  E +L+  AF W+L EIE+RF+ +L   GEMVG  +AQS+GEPATQMTLN
Sbjct: 186 RSTLCTRRVAEEFKLSSDAFDWVLGEIESRFRSSLVDPGEMVGPLSAQSLGEPATQMTLN 245

Query: 544 T 546
           T
Sbjct: 246 T 246

[185][TOP]
>UniRef100_A9QMH0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Panagrellus
           redivivus RepID=A9QMH0_PANRE
          Length = 636

 Score =  129 bits (323), Expect = 2e-28
 Identities = 74/181 (40%), Positives = 106/181 (58%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW +L +DR  LR E+F  G+AK  L  N++RLIWNA++IF V     ++L P+ I+ G
Sbjct: 164 QEWRKLCEDRAMLR-EIFPKGDAKTVLPCNLQRLIWNAQKIFHVDLRKPTELHPATIIEG 222

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  R  +++  +                           ++S  AQ NATLL  + +
Sbjct: 223 VRKLGDRLVIVSGTD---------------------------KISRQAQENATLLMNILL 255

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++ A+K V   ++LT +AF W++ EIE+RF QA+   GEMVG  AAQS+GEPATQMTLN
Sbjct: 256 RSTFATKQVAEVYKLTNEAFEWIIGEIESRFNQAIVQPGEMVGPLAAQSLGEPATQMTLN 315

Query: 544 T 546
           T
Sbjct: 316 T 316

[186][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
            RepID=Q9BMP3_MONBE
          Length = 1743

 Score =  128 bits (322), Expect = 2e-28
 Identities = 76/180 (42%), Positives = 102/180 (56%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            EW +L+ DR FLR  VF  GEA + L V + RLI +A++ F++     +DLSP+ + + +
Sbjct: 873  EWQRLQDDRQFLR-SVFPKGEADVVLPVQLRRLIISAQKEFNIDPRRPTDLSPAHVAQAI 931

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
                 R  V+  D+                            LS+ AQ NATLLF  ++R
Sbjct: 932  RTFTDRLVVIPGDDP---------------------------LSKVAQRNATLLFNCNLR 964

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            + L+S+  +  HRL  KAF W+L E+E RF QA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 965  SVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQSLGEPATQMTLNT 1024

[187][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
           RepID=A9V5W6_MONBE
          Length = 1307

 Score =  128 bits (322), Expect = 2e-28
 Identities = 76/180 (42%), Positives = 102/180 (56%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW +L+ DR FLR  VF  GEA + L V + RLI +A++ F++     +DLSP+ + + +
Sbjct: 437 EWQRLQDDRQFLR-SVFPKGEADVVLPVQLRRLIISAQKEFNIDPRRPTDLSPAHVAQAI 495

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
                R  V+  D+                            LS+ AQ NATLLF  ++R
Sbjct: 496 RTFTDRLVVIPGDDP---------------------------LSKVAQRNATLLFNCNLR 528

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           + L+S+  +  HRL  KAF W+L E+E RF QA A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 529 SVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQSLGEPATQMTLNT 588

[188][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
          Length = 1752

 Score =  128 bits (322), Expect = 2e-28
 Identities = 75/181 (41%), Positives = 104/181 (57%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL  DR+ L   +F  G+A+ PL VN++R+I NA +IF +     +DL PS I+ G
Sbjct: 933  EEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIING 992

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            +  L+ +  +         D I R++                      Q NATLLFQ+ +
Sbjct: 993  LNELIAKLTIFRGS-----DRITRDV----------------------QNNATLLFQILL 1025

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+  A K V+ E+RL + AF W++ E+E RFQQA+   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1026 RSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLN 1085

Query: 544  T 546
            T
Sbjct: 1086 T 1086

[189][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6JYP8_SCHJY
          Length = 1748

 Score =  128 bits (321), Expect = 3e-28
 Identities = 77/181 (42%), Positives = 102/181 (56%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E++QL  DR+  R  +F  GEA+ P  VN+ R+I N+ +IF +     +DL PS I+ G
Sbjct: 933  EEYSQLLTDRELCRGFIFPNGEARWPQPVNVHRIIQNSVQIFHLDSKKPTDLLPSDIIYG 992

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L+ +  V   D                       D   KE+ E    NATLLFQ+ +
Sbjct: 993  VRNLISKLSVFRGD-----------------------DRITKEIQE----NATLLFQILL 1025

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA+K V+ E+ L + AF W++ EIE RFQQ     GEMVG  AAQSIGEPATQMTLN
Sbjct: 1026 RSKLATKRVVMEYHLNKIAFEWIIGEIEARFQQCQVNPGEMVGTLAAQSIGEPATQMTLN 1085

Query: 544  T 546
            T
Sbjct: 1086 T 1086

[190][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
            RepID=Q25151_9ANNE
          Length = 1337

 Score =  127 bits (320), Expect = 4e-28
 Identities = 74/180 (41%), Positives = 106/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ QL +DR  +R ++F +G++K+ L  N++RLIWNA++IF +     S+L P KI+  V
Sbjct: 862  EYKQLLEDRTAIR-QIFPSGDSKIVLPCNLQRLIWNAQKIFRIHTRKPSNLHPVKIIEDV 920

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              L  +  ++  ++                            LS+TA  NATLL  + VR
Sbjct: 921  RELSKKFMIVKGED---------------------------RLSKTANTNATLLMNILVR 953

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L SK V+ E  L+ +AF WL+ EIE++F QA    GEMVGA AAQS+GEPATQMTLNT
Sbjct: 954  STLCSKRVIEEFHLSTEAFEWLMGEIESKFIQARVQPGEMVGALAAQSLGEPATQMTLNT 1013

[191][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
            RepID=Q010D7_OSTTA
          Length = 1673

 Score =  127 bits (319), Expect = 5e-28
 Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 2/182 (1%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQ--NDRSDLSPSKIVR 180
            EW +L+KDR  LR +VF TG+  + L VN++R+IWNA++ + + +      +LS + ++ 
Sbjct: 946  EWERLQKDRVELR-KVFPTGDPHVHLPVNMKRIIWNAQKQYGMYRPGGSEEELSVTHVIE 1004

Query: 181  GVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVH 360
             V  LL +  V+   +   ++A                           Q N TLLF  H
Sbjct: 1005 SVAELLPKLIVVAGTDPLSIEA---------------------------QRNGTLLFFAH 1037

Query: 361  VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 540
            VRA+LA+K VL +H+LTR  F W++ E+E+RF+ ALAP G+ +G  AAQSIGEPATQMTL
Sbjct: 1038 VRANLAAKRVLKDHKLTRAGFDWVIGEVESRFKMALAPPGDGIGVVAAQSIGEPATQMTL 1097

Query: 541  NT 546
            NT
Sbjct: 1098 NT 1099

[192][TOP]
>UniRef100_A7R1R2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7R1R2_VITVI
          Length = 429

 Score =  127 bits (318), Expect = 7e-28
 Identities = 76/180 (42%), Positives = 108/180 (60%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           E  +L+ DR+ L  E+  TG++   + VN++RLIWNA++ F +     SD+   +IV  V
Sbjct: 207 EVQKLEADRNQLGTEIASTGDSFWSMPVNLKRLIWNAQKTFKIDLRRPSDMHLMEIVEAV 266

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
           + L  R +V+  D     D I+ E                      AQ NATLLF + +R
Sbjct: 267 DKLQERLKVVPGD-----DLISME----------------------AQKNATLLFNILLR 299

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++ +SK VL+E+RL+R+AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNT
Sbjct: 300 STFSSKRVLNEYRLSREAFDWVIGEIESRFLQSLVSPGEMIGCIAAQSIGEPATQMTLNT 359

[193][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R4Y0_PICPG
          Length = 1743

 Score =  127 bits (318), Expect = 7e-28
 Identities = 80/180 (44%), Positives = 101/180 (56%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ QL  DR FLR  VF  G+   PL VN+ R+I NA++IF + +   SDL+  +I+ GV
Sbjct: 933  EYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQIFHLDRAKASDLTIPEIIHGV 992

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              L  +  VL  +                            EL + AQ NAT LFQ  VR
Sbjct: 993  RDLCKKLFVLRGEN---------------------------ELIKEAQQNATSLFQCLVR 1025

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            A LA++ +L E RL R AF W+L  IE +FQ++L   GEMVG  AAQSIGEPATQMTLNT
Sbjct: 1026 ARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAAQSIGEPATQMTLNT 1085

[194][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
            castellanii RepID=O00820_ACACA
          Length = 1569

 Score =  126 bits (317), Expect = 9e-28
 Identities = 75/181 (41%), Positives = 105/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KE+ Q+  DR  LR ++F  G+ + PL VN+ R+I NA++IF +     SDL P +IV  
Sbjct: 860  KEFEQILADRRLLREKIFLAGDDRWPLPVNLTRMILNAQKIFHLGPKKVSDLDPCQIVED 919

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            +  L+ R  V+   +D                           +S+ AQ NA LLF + +
Sbjct: 920  LGNLIERLVVIPGQDD---------------------------ISKEAQANAILLFSILL 952

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R +LAS+ VL E+RL + ++ WLL EI +RF ++L   GEM+GA AAQSIGEPATQMTLN
Sbjct: 953  RFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCDPGEMIGALAAQSIGEPATQMTLN 1012

Query: 544  T 546
            T
Sbjct: 1013 T 1013

[195][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
            RepID=A1YIB1_9BASI
          Length = 1013

 Score =  126 bits (316), Expect = 1e-27
 Identities = 76/175 (43%), Positives = 98/175 (56%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            KEW QL KDR  LR  +F  G  + PL VNI R+I NA++IF +     SDL P  I++ 
Sbjct: 866  KEWEQLIKDRKMLREFIFTDGNGRKPLPVNIRRIIQNAQQIFHIDFRKPSDLPPPDIIQM 925

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L +R  V+  D+                            LS  AQ NATLLF++ +
Sbjct: 926  VNDLCNRLIVVRGDD---------------------------ALSRAAQXNATLLFRILL 958

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
            R++ A++ VL E  L+R+AF W+L EIE RF Q+LA  GEM G  AAQSIGEPAT
Sbjct: 959  RSNFATRRVLEEFHLSREAFVWVLGEIEARFNQSLAAPGEMCGTLAAQSIGEPAT 1013

[196][TOP]
>UniRef100_A9QMR7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bunonema reticulatum
           RepID=A9QMR7_9BILA
          Length = 614

 Score =  125 bits (315), Expect = 2e-27
 Identities = 77/181 (42%), Positives = 102/181 (56%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL KDR  LR E+F  G+AK+ L  N++RLIWNA++IF V       LSP +++ G
Sbjct: 149 EEWKQLVKDRRTLR-EIFPKGDAKVVLPCNVQRLIWNAQKIFHVEIRRPVSLSPLRVIEG 207

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  R  V+ S ED                           +S+ AQ NATLL ++ +
Sbjct: 208 VRELTARL-VIVSGED--------------------------HISQHAQENATLLIKILL 240

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R++L S+ +  +HRL  +AF WLL E+  RFQQA         A AAQS+GEPATQMTLN
Sbjct: 241 RSTLCSRKMAEQHRLNAEAFEWLLGEVXTRFQQAXXXXXXXXXALAAQSLGEPATQMTLN 300

Query: 544 T 546
           T
Sbjct: 301 T 301

[197][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
            RepID=A7S8F9_NEMVE
          Length = 1929

 Score =  125 bits (315), Expect = 2e-27
 Identities = 74/180 (41%), Positives = 105/180 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ +L++DR+ LR ++  +G A++ L VN+ RLIWNA++ F +     SDL P +++ GV
Sbjct: 951  EFNKLQEDREILR-KIQPSGNARVALPVNLSRLIWNAQKTFHITNRSASDLHPLRVIEGV 1009

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
              L  +  V+ + ED                           +S+ AQ NATLLF + +R
Sbjct: 1010 RELSKKL-VIVAGED--------------------------HISKQAQFNATLLFNILLR 1042

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            ++L +K V  E  L+ +AF WLL EIE RF  +    GEMVGA AAQS+GEPATQMTLNT
Sbjct: 1043 STLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVKPGEMVGALAAQSLGEPATQMTLNT 1102

[198][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
            RepID=B0DB45_LACBS
          Length = 1742

 Score =  125 bits (315), Expect = 2e-27
 Identities = 77/183 (42%), Positives = 103/183 (56%), Gaps = 2/183 (1%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLP--LAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 177
            +E+A+L +DR  LRH +F       P  L VN+ R++ NA +IF + +   SDL P  IV
Sbjct: 935  EEFARLVEDRRLLRHFIFPRVPTTQPHYLPVNLHRIVQNAIQIFHIDRRKPSDLEPGYIV 994

Query: 178  RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 357
             GV  L  R  V+  D+                            LS  AQLNATL F++
Sbjct: 995  DGVNELCGRLVVVRGDD---------------------------PLSREAQLNATLTFRM 1027

Query: 358  HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
            H+RA+ AS+ VL +  LTR+AF W++ E+E +F Q++   GEM G  AAQSIGEPATQMT
Sbjct: 1028 HLRATFASRRVLEKFHLTREAFDWVMGEVETKFNQSVVHPGEMCGTLAAQSIGEPATQMT 1087

Query: 538  LNT 546
            LNT
Sbjct: 1088 LNT 1090

[199][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
            RepID=A8N128_COPC7
          Length = 1642

 Score =  125 bits (314), Expect = 2e-27
 Identities = 75/183 (40%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLP--LAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 177
            +E+A+L +DR  LR+ +F    A +   L VN++RL+ NA +IF + +   SDL P+ IV
Sbjct: 882  EEYARLVEDRRLLRNFIFPRRSANVDFYLPVNLQRLVQNASQIFHIDRRKPSDLDPAYIV 941

Query: 178  RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 357
              +  L  R  ++  D+                            LS+ AQ N+TLLF++
Sbjct: 942  DSIHELGKRLVIVRGDD---------------------------PLSKEAQDNSTLLFRM 974

Query: 358  HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
            H+RA+ A++ V+ + RLTR+AF W+L EIE +F Q++A  GEM G  AAQSIGEPATQMT
Sbjct: 975  HLRATFAARKVIEQMRLTREAFEWILGEIETKFNQSIAHPGEMCGTLAAQSIGEPATQMT 1034

Query: 538  LNT 546
            LNT
Sbjct: 1035 LNT 1037

[200][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
            RepID=UPI0000F24379
          Length = 1739

 Score =  124 bits (311), Expect = 5e-27
 Identities = 75/181 (41%), Positives = 101/181 (55%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL  DR +LR   F  G+   PL VN+ R+I NA++IF   +   SDL   +++ G
Sbjct: 931  EEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDEVIVG 990

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L  +  V+  D                            EL + AQ NATLLFQ  V
Sbjct: 991  VRSLCEKLLVVRGDT---------------------------ELVKEAQANATLLFQCLV 1023

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LAS+ V+ E +L R +F W++ EIE +FQ+++   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1024 RSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLN 1083

Query: 544  T 546
            T
Sbjct: 1084 T 1084

[201][TOP]
>UniRef100_A9QMS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Poikilolaimus
           oxycercus RepID=A9QMS4_9BILA
          Length = 612

 Score =  124 bits (311), Expect = 5e-27
 Identities = 69/180 (38%), Positives = 104/180 (57%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QLK+DR  LR ++F  G +K+ L  NI+RLIWNA++IF V   + ++LSP  ++  +
Sbjct: 160 EWEQLKEDRGLLR-KIFPKGGSKVVLPCNIQRLIWNAQKIFRVDNRNPTELSPLYVIEAI 218

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  +  +++ D+                           ++S+ AQ NATLL  + +R
Sbjct: 219 RKLSEKLVIVSGDD---------------------------KISQQAQYNATLLMNILIR 251

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK V  +HRL ++AF ++L EIENRFQ+A+       G   AQ +G+PATQMTLNT
Sbjct: 252 STLCSKQVAEKHRLNQEAFEYILGEIENRFQRAIVXXXXXXGVLXAQXLGQPATQMTLNT 311

[202][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3GID7_PICST
          Length = 1739

 Score =  124 bits (311), Expect = 5e-27
 Identities = 75/181 (41%), Positives = 101/181 (55%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL  DR +LR   F  G+   PL VN+ R+I NA++IF   +   SDL   +++ G
Sbjct: 931  EEYKQLLDDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDEVIVG 990

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L  +  V+  D                            EL + AQ NATLLFQ  V
Sbjct: 991  VRSLCEKLLVVRGDT---------------------------ELVKEAQANATLLFQCLV 1023

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LAS+ V+ E +L R +F W++ EIE +FQ+++   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1024 RSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLN 1083

Query: 544  T 546
            T
Sbjct: 1084 T 1084

[203][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
            RepID=Q9BMP2_STYMT
          Length = 1678

 Score =  124 bits (310), Expect = 6e-27
 Identities = 71/180 (39%), Positives = 107/180 (59%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ Q+ +DRD LR  + K+ E  + LAVN+ R+IWNAK  F +R N +S+L P+ ++  +
Sbjct: 843  EYKQIIQDRDDLRFTILKSQEDAVHLAVNVPRIIWNAKEQFSIRPNQKSNLEPTYVLSRL 902

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L+        D+ A +  +     P               L   A  ++T LF++++R
Sbjct: 903  QNLM--------DDLAPIPGVMIHKDP---------------LILEANSDSTWLFKIYLR 939

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            + L SK V+ + RL++ AF W+L EI++RF QAL   GEMVG+  AQS+GEPATQMTLNT
Sbjct: 940  SLLNSKAVIQQERLSKDAFNWILGEIKSRFDQALVNPGEMVGSIGAQSMGEPATQMTLNT 999

[204][TOP]
>UniRef100_A9QMG5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mesorhabditis
           longespiculosa RepID=A9QMG5_9BILA
          Length = 623

 Score =  124 bits (310), Expect = 6e-27
 Identities = 71/180 (39%), Positives = 103/180 (57%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW +L+ DR  LR ++F  G+ ++ L  N++RLIWNA++IF V     ++LSP +++ GV
Sbjct: 164 EWQRLEDDRRLLR-KIFPRGDNRVVLPCNLQRLIWNAQKIFKVETRKTTNLSPLRVIEGV 222

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             L  R  ++ S ED                           +S+ AQ NATLL  + +R
Sbjct: 223 RELSKRL-IIVSGED--------------------------RISQQAQYNATLLMNILLR 255

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           ++L SK +  +H+L ++ F WLL EIE+RFQQA+       G  A QS+GEPATQMTLNT
Sbjct: 256 STLCSKQMAEKHKLNQEGFEWLLGEIEHRFQQAIVXXXXXXGXLAXQSLGEPATQMTLNT 315

[205][TOP]
>UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
            RepID=A1YIB6_9FUNG
          Length = 1018

 Score =  123 bits (308), Expect = 1e-26
 Identities = 72/175 (41%), Positives = 99/175 (56%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL  DR  LR  +F +G+   PL  N+ RL+WNA+ IF + +   S+L P +I+ G
Sbjct: 871  EEYRQLCDDRRVLREFIFTSGDQAWPLPGNLRRLVWNAQNIFHIDKRKPSNLHPLQIIEG 930

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+LL+ R  V+   +                           +LS  AQLNATLL+Q  +
Sbjct: 931  VKLLIDRLIVVRGSD---------------------------KLSNEAQLNATLLYQCLL 963

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
            R++L++K VL +  L  +AF W+L EIE RFQ A    GEMVG  AAQSIGEPAT
Sbjct: 964  RSTLSTKRVLEDFHLNAQAFEWILGEIETRFQTAQVAPGEMVGTVAAQSIGEPAT 1018

[206][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151A8B3
          Length = 1018

 Score =  122 bits (307), Expect = 1e-26
 Identities = 76/181 (41%), Positives = 101/181 (55%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +E+ QL  DR +LR   F  G+   PL VN+ R+I NA+++F   ++  SDL   +IV G
Sbjct: 197 EEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGGRHKASDLRLEEIVEG 256

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V+ L  +  VL  D                             L + +Q NATLLFQ  V
Sbjct: 257 VKELCKKLLVLRGDSP---------------------------LVKESQENATLLFQCLV 289

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R+ LA++ V+ E RL R +F W + EIE +FQ++L   GEMVG  AAQSIGEPATQMTLN
Sbjct: 290 RSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLN 349

Query: 544 T 546
           T
Sbjct: 350 T 350

[207][TOP]
>UniRef100_A9QME4 RNA polymerase 2 (Fragment) n=1 Tax=Oscheius tipulae
           RepID=A9QME4_OSCTI
          Length = 446

 Score =  122 bits (307), Expect = 1e-26
 Identities = 69/164 (42%), Positives = 97/164 (59%)
 Frame = +1

Query: 55  FKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVLTSDEDA 234
           F  G+ K+ L  N++RLIWNA++IF V   + + L+P  ++RGV+ L  +  ++   ED 
Sbjct: 1   FPNGDNKVVLPCNLQRLIWNAQKIFHVETREVTSLNPLAVIRGVKNLSDKL-IIVGGED- 58

Query: 235 EVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTR 414
                                     +S  AQ NATLL  + +R++L SK + + H+L +
Sbjct: 59  -------------------------RISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQ 93

Query: 415 KAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
           +AF WLL EIE RF+ A+A  GEMVGA AAQS+GEPATQMTLNT
Sbjct: 94  EAFDWLLGEIETRFKSAIAQPGEMVGALAAQSLGEPATQMTLNT 137

[208][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
            Tax=Pichia guilliermondii RepID=RPB1_PICGU
          Length = 1579

 Score =  122 bits (307), Expect = 1e-26
 Identities = 76/181 (41%), Positives = 101/181 (55%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL  DR +LR   F  G+   PL VN+ R+I NA+++F   ++  SDL   +IV G
Sbjct: 763  EEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGGRHKASDLRLEEIVEG 822

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  VL  D                             L + +Q NATLLFQ  V
Sbjct: 823  VKELCKKLLVLRGDSP---------------------------LVKESQENATLLFQCLV 855

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA++ V+ E RL R +F W + EIE +FQ++L   GEMVG  AAQSIGEPATQMTLN
Sbjct: 856  RSRLATRRVIEEFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLN 915

Query: 544  T 546
            T
Sbjct: 916  T 916

[209][TOP]
>UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri
           RepID=Q9U5F6_EPTBU
          Length = 595

 Score =  122 bits (306), Expect = 2e-26
 Identities = 67/171 (39%), Positives = 100/171 (58%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +E+ Q++ DR+ LR  VF TG++K+ L  N++R+IWNA++IF +     +DL+P ++V G
Sbjct: 453 REFEQIRDDREVLR-AVFPTGDSKVVLPCNLQRMIWNAQKIFHINTRSSTDLNPLRVVEG 511

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  L  + +++  D+                            +S  AQ NATLLF  HV
Sbjct: 512 VNDLTQKLQIVKGDDP---------------------------ISRQAQQNATLLFNCHV 544

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIG 516
           RA+L ++ +  EHRL+ +AF WLL EIE +F  A+   GEMVGA AAQS+G
Sbjct: 545 RATLCTRRLAEEHRLSSEAFEWLLGEIEAKFNHAIVHPGEMVGALAAQSLG 595

[210][TOP]
>UniRef100_Q8MX26 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cercomonas sp. ATCC
            50319 RepID=Q8MX26_9EUKA
          Length = 1014

 Score =  122 bits (305), Expect = 2e-26
 Identities = 71/177 (40%), Positives = 103/177 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  QL+ DR  LR ++  TGE  + L VN++RLIWNA++ F V +  +S++ P +++  V
Sbjct: 865  ELKQLRDDRQLLRDKIQPTGEDMVHLPVNLKRLIWNAQKRFHVDRFSKSNIEPQQVIADV 924

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R  V+   +                            LS  AQ NAT LF++ +R
Sbjct: 925  KSLAERLIVVRGTDP---------------------------LSLQAQTNATTLFKIMLR 957

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
            + L++K VL ++RL R AF+WL+ EIE RF QA+   GE+VG+ AAQ+IGEPATQMT
Sbjct: 958  SVLSAKRVLKDYRLNRDAFSWLIGEIEARFNQAIVHPGEVVGSIAAQAIGEPATQMT 1014

[211][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BD271
          Length = 1749

 Score =  121 bits (304), Expect = 3e-26
 Identities = 73/181 (40%), Positives = 105/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL+ DR +LR   F  G+   PL VN+ R+I NA++IF   ++  SDL   ++VRG
Sbjct: 936  EEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQNAQQIFHNGRHKASDLRLDEVVRG 995

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  V+                                L++ AQ NATLLFQ  +
Sbjct: 996  VQDLCTKLLVIRGKT---------------------------ALTKEAQENATLLFQCLL 1028

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA++ V+ E +L+R +F W++ EIE +FQ+++   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1029 RSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLN 1088

Query: 544  T 546
            T
Sbjct: 1089 T 1089

[212][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
            RepID=Q5KGG3_CRYNE
          Length = 1786

 Score =  121 bits (304), Expect = 3e-26
 Identities = 72/181 (39%), Positives = 103/181 (56%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+AQ+ +DR  LR E++  G    PL VNI+R+I N+++IF +     SDL P  ++  
Sbjct: 946  EEFAQISEDRRILRSEIYPDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLLEQ 1005

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
             + L  R  V+  D+                           +LS  AQ NATL+F + +
Sbjct: 1006 RDALADRLLVVRGDD---------------------------KLSRAAQKNATLVFNMLL 1038

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA++ VL E+ L R+AF W++ E+E  F +A+  A EMVG  AAQSIGEPATQMTLN
Sbjct: 1039 RSHLATRRVLEEYHLNREAFDWVIGEVEQIFNKAVVNAAEMVGTLAAQSIGEPATQMTLN 1098

Query: 544  T 546
            T
Sbjct: 1099 T 1099

[213][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
           RepID=C0NEY2_AJECG
          Length = 1234

 Score =  121 bits (304), Expect = 3e-26
 Identities = 77/181 (42%), Positives = 106/181 (58%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL KDR F+R  V K  E  + L +N++R++ +AK IF +R+   SDL P++++  
Sbjct: 441 EEWEQLLKDRAFMR-SVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 499

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL R  V+  D     D I+RE                      AQ +ATLLF+  +
Sbjct: 500 VRALLERLVVVRGD-----DVISRE----------------------AQESATLLFKAQL 532

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
           R+ LA + ++ E+ L R AF  +L  IE+RF +A+A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 533 RSRLAFRRLVVEYSLNRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLN 592

Query: 544 T 546
           T
Sbjct: 593 T 593

[214][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
            RepID=B5RSM9_DEBHA
          Length = 1749

 Score =  121 bits (304), Expect = 3e-26
 Identities = 73/181 (40%), Positives = 105/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL+ DR +LR   F  G+   PL VN+ R+I NA++IF   ++  SDL   ++VRG
Sbjct: 936  EEYRQLEADRRYLRDVCFPNGDFNWPLPVNLRRIIQNAQQIFHNGRHKASDLRLDEVVRG 995

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  V+                                L++ AQ NATLLFQ  +
Sbjct: 996  VQDLCTKLLVIRGKT---------------------------ALTKEAQENATLLFQCLL 1028

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA++ V+ E +L+R +F W++ EIE +FQ+++   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1029 RSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLN 1088

Query: 544  T 546
            T
Sbjct: 1089 T 1089

[215][TOP]
>UniRef100_B4YT35 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tenomerga cinerea
           RepID=B4YT35_9COLE
          Length = 553

 Score =  121 bits (303), Expect = 4e-26
 Identities = 69/166 (41%), Positives = 96/166 (57%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +EW QL KDR+ LR ++F TGE+K+ L  N++R+IWN ++IF + +   +DLSP ++++G
Sbjct: 416 REWDQLTKDREALR-QIFPTGESKVVLPCNLQRMIWNVQKIFHINKRATTDLSPLRVIQG 474

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           V  LL +  ++  D+                            LS  A  NATLLFQ  V
Sbjct: 475 VRQLLQKCIIVAGDD---------------------------RLSRQANENATLLFQCLV 507

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATA 501
           RA+L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA A
Sbjct: 508 RATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQATMCPGEMVGALA 553

[216][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5ACI7_CANAL
          Length = 1728

 Score =  121 bits (303), Expect = 4e-26
 Identities = 75/181 (41%), Positives = 102/181 (56%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL KDR +LR   F  G+   PL VN+ R+I NA++IF   +   SDL   +IV G
Sbjct: 931  EEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLG 990

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  V+  D                             L + AQ NATLLFQ  +
Sbjct: 991  VKELCMKLLVVRGDTP---------------------------LVKEAQENATLLFQCLL 1023

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA++ V+ E +L R +F W++ EIE +FQ+++   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1024 RSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLN 1083

Query: 544  T 546
            T
Sbjct: 1084 T 1084

[217][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YN85_CANAL
          Length = 1742

 Score =  121 bits (303), Expect = 4e-26
 Identities = 75/181 (41%), Positives = 102/181 (56%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL KDR +LR   F  G+   PL VN+ R+I NA++IF   +   SDL   +IV G
Sbjct: 931  EEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLG 990

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  V+  D                             L + AQ NATLLFQ  +
Sbjct: 991  VKELCMKLLVVRGDTP---------------------------LVKEAQENATLLFQCLL 1023

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA++ V+ E +L R +F W++ EIE +FQ+++   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1024 RSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLN 1083

Query: 544  T 546
            T
Sbjct: 1084 T 1084

[218][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
            RepID=C4Y5N4_CLAL4
          Length = 1402

 Score =  121 bits (303), Expect = 4e-26
 Identities = 73/180 (40%), Positives = 101/180 (56%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ QL KDR +LR   F  G+   PL VN+ R+I NA++IF   +   SDL   +IV GV
Sbjct: 891  EYEQLLKDRKYLREVCFPNGDFNWPLPVNLRRIIQNAQQIFHSGRQRASDLKLDEIVEGV 950

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  +  V+                                L++ AQ +ATLLFQ  VR
Sbjct: 951  KALCSKLLVIRGKS---------------------------RLAKEAQEDATLLFQCLVR 983

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNT 546
            + LA++ ++ E +L+R +F W+  EIE +FQ+++   GEMVG  AAQSIGEPATQMTLNT
Sbjct: 984  SRLAARRIIEEFKLSRISFEWVCGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNT 1043

[219][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5E6J4_LODEL
          Length = 1745

 Score =  121 bits (303), Expect = 4e-26
 Identities = 76/181 (41%), Positives = 101/181 (55%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL +DR +LR  VF  G+   PL VN+ R+I NA++IF   ++  SDL   +IV  
Sbjct: 925  EEYNQLLEDRKYLRDVVFPNGDFSWPLPVNLRRIIQNAQQIFHSGRDKPSDLRLDEIVES 984

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L  +  V+  D                             L + AQ NATLLFQ  V
Sbjct: 985  VRDLCTKFLVVRGD---------------------------TPLMKEAQENATLLFQCLV 1017

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LAS+ V+ E +L + +F W L EIE +FQ+++   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1018 RSRLASRRVIEEFKLNKASFEWALGEIETQFQKSVVHPGEMVGVVAAQSIGEPATQMTLN 1077

Query: 544  T 546
            T
Sbjct: 1078 T 1078

[220][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
            RepID=A1YIA7_ISSOR
          Length = 1647

 Score =  121 bits (303), Expect = 4e-26
 Identities = 74/181 (40%), Positives = 104/181 (57%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL KDR++LR  VF  GE   PL VN+ R++ NA++IF V +   SDL+  +IV+ 
Sbjct: 854  EEYEQLLKDREYLRTVVFPDGENNWPLPVNVRRIVQNAQQIFHVDRYKASDLTIEEIVKS 913

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ L  +  V+  D     +A  RE                         N+TLLFQ  +
Sbjct: 914  VQELCKKFTVVRGDGGCLTEA--RE-------------------------NSTLLFQCLI 946

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA++ VL E++L + AF W++  I  +F ++L   GEMVG  AAQSIGEPATQMTLN
Sbjct: 947  RSKLATRRVLEEYKLNKDAFEWVVGTIAQQFARSLVNPGEMVGVVAAQSIGEPATQMTLN 1006

Query: 544  T 546
            T
Sbjct: 1007 T 1007

[221][TOP]
>UniRef100_UPI000187E3DF hypothetical protein MPER_04443 n=1 Tax=Moniliophthora perniciosa
           FA553 RepID=UPI000187E3DF
          Length = 343

 Score =  120 bits (302), Expect = 5e-26
 Identities = 74/183 (40%), Positives = 102/183 (55%), Gaps = 2/183 (1%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLP--LAVNIERLIWNAKRIFDVRQNDRSDLSPSKIV 177
           +E+  L  DR  LRH +F   +  +   L VN+ R++ NA +IF + +   SDL P+ IV
Sbjct: 136 EEYTALVNDRQTLRHFIFPRCDPSINQYLPVNLSRIVQNAVQIFHIDRRKPSDLEPAYIV 195

Query: 178 RGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQV 357
             V+ L  R  V+  ++D                           LS  AQ NATL F++
Sbjct: 196 DAVKALCERLIVVRGNDD---------------------------LSREAQDNATLRFRM 228

Query: 358 HVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMT 537
           H+RA+ AS+ VL +  L R+AF W+L E+E++F Q+L   GEM G  AAQSIGEPATQMT
Sbjct: 229 HLRATFASRRVLEKFHLNREAFEWVLGEVESKFNQSLVNPGEMCGTLAAQSIGEPATQMT 288

Query: 538 LNT 546
           LNT
Sbjct: 289 LNT 291

[222][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
            RepID=A4S3M0_OSTLU
          Length = 1646

 Score =  120 bits (302), Expect = 5e-26
 Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 2/182 (1%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQND--RSDLSPSKIVR 180
            EW +L++DR  LR  +  TG+  + L VN++R++WNA++ + + + D    ++  + I+ 
Sbjct: 926  EWDRLQRDRVELR-TICPTGDPHVHLPVNMKRILWNAQKQYGLYRPDSGEEEVKVTHIIE 984

Query: 181  GVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVH 360
             V  LL +  V+   +   V+A                           Q N T+LF  H
Sbjct: 985  SVAELLPKLIVVPGTDPLSVEA---------------------------QRNGTMLFFAH 1017

Query: 361  VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 540
            VRA+LA+K VL EH+LTR  F W++ EIE+RF+ ALAP G+ +G  AAQSIGEPATQMTL
Sbjct: 1018 VRANLAAKRVLKEHKLTRAGFDWVIGEIESRFKMALAPPGDGIGTVAAQSIGEPATQMTL 1077

Query: 541  NT 546
            NT
Sbjct: 1078 NT 1079

[223][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
            RepID=C5GKA7_AJEDR
          Length = 1746

 Score =  120 bits (302), Expect = 5e-26
 Identities = 76/181 (41%), Positives = 106/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL KDR F+R  V K  E  + L +N++R++ +AK IF +R+   SDL P++++  
Sbjct: 954  EEWEQLLKDRAFMR-SVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            +  LL R  V+  D     D I+RE                      AQ +ATLLF+  +
Sbjct: 1013 IRALLDRLIVVRGD-----DVISRE----------------------AQESATLLFKAQL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA + ++ E+ L R AF  +L  IE+RF +A+A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFRRLVVEYSLNRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[224][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9WN64_CANDC
          Length = 1735

 Score =  120 bits (302), Expect = 5e-26
 Identities = 75/181 (41%), Positives = 101/181 (55%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL KDR +LR   F  G+   PL VN+ R+I NA++IF   +   SDL   +I+ G
Sbjct: 931  EEYNQLLKDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIIFG 990

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L  +  V+  D                             L + AQ NATLLFQ  +
Sbjct: 991  VRELCKKLLVVRGDTP---------------------------LVKEAQENATLLFQCLL 1023

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA++ V+ E +L R +F W+L EIE +FQ+++   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1024 RSRLAARRVIEEFKLNRVSFEWVLGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLN 1083

Query: 544  T 546
            T
Sbjct: 1084 T 1084

[225][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
            RepID=A6QYA7_AJECN
          Length = 1747

 Score =  120 bits (302), Expect = 5e-26
 Identities = 76/181 (41%), Positives = 106/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL KDR F+R  V K  E  + L +N++R++ +AK IF +R+   SDL P++++  
Sbjct: 954  EEWEQLLKDRAFMR-SVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  +L R  V+  D     D I+RE                      AQ +ATLLF+  +
Sbjct: 1013 VRAMLERLVVVRGD-----DVISRE----------------------AQESATLLFKAQL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA + ++ E+ L R AF  +L  IE+RF +A+A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFRRLVVEYSLNRLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[226][TOP]
>UniRef100_Q9NJK2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polyxenus fasciculatus
            RepID=Q9NJK2_9MYRI
          Length = 751

 Score =  120 bits (301), Expect = 7e-26
 Identities = 73/175 (41%), Positives = 99/175 (56%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW  LK DR+ LR  +F  G++K+ L  N++R+IWNA++IF +     +DLSP +++ G
Sbjct: 605  REWXTLKLDREVLR-TIFPKGDSKVVLPCNLQRMIWNAQKIFHINVRTPTDLSPLRVIEG 663

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L  +  V+   EDA                          LS+ A  NATLL    +
Sbjct: 664  VRDLTKKL-VIVVGEDA--------------------------LSKQANDNATLLINCLI 696

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
            R++L +K V  E RL+ +AF WLL EIE RFQ A    GEMVGA AAQS+GEPAT
Sbjct: 697  RSTLCTKRVAEEFRLSAEAFEWLLGEIETRFQHAQVQPGEMVGALAAQSLGEPAT 751

[227][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
            RepID=C7YI77_NECH7
          Length = 1750

 Score =  120 bits (301), Expect = 7e-26
 Identities = 73/181 (40%), Positives = 102/181 (56%), Gaps = 1/181 (0%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRH-EVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            EW  L KDR  +R     K  E  + L +NI R+I +AKR+F+V+ NDRS+L PS ++  
Sbjct: 943  EWEALLKDRRVIRQINKAKMNEEMMQLPLNITRIIESAKRVFNVKANDRSNLRPSDVIPS 1002

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL   +++   +   V+A A                           NAT+LF+  +
Sbjct: 1003 VQNLLDHMKIVRGTDPISVEADA---------------------------NATILFKGLL 1035

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA K V+ EHRL + AF  ++ E++NR+ +A    GEMVG  AAQSIGEPATQMTLN
Sbjct: 1036 RSRLAFKEVVKEHRLNKLAFDHVIGELQNRWDRAFVSPGEMVGVLAAQSIGEPATQMTLN 1095

Query: 544  T 546
            T
Sbjct: 1096 T 1096

[228][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb01 RepID=C1H3Q4_PARBA
          Length = 1748

 Score =  120 bits (300), Expect = 8e-26
 Identities = 75/181 (41%), Positives = 106/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL KDR F+R    K  +  + L +N++R++ +AK IF +R+   SDL P++++  
Sbjct: 960  EEWEQLLKDRAFMRAAA-KEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 1018

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  LL R  V+  D     D I+RE                      AQ +ATLLF+  +
Sbjct: 1019 VRALLDRLVVVRGD-----DVISRE----------------------AQESATLLFKAQL 1051

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA + +++E+ L + AF  +L  IENRF +A+A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 1052 RSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVGVLAAQSIGEPATQMTLN 1111

Query: 544  T 546
            T
Sbjct: 1112 T 1112

[229][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb18 RepID=C1GHL1_PARBD
          Length = 1746

 Score =  120 bits (300), Expect = 8e-26
 Identities = 75/181 (41%), Positives = 106/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL KDR F+R    K  +  + L +N++R++ +AK IF +R+   SDL P++++  
Sbjct: 954  EEWEQLLKDRAFMRTAA-KEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  LL R  V+  D     D I+RE                      AQ +ATLLF+  +
Sbjct: 1013 VRALLDRLVVVRGD-----DVISRE----------------------AQESATLLFKAQL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA + +++E+ L + AF  +L  IENRF +A+A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVGVLAAQSIGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[230][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb03 RepID=C0SE75_PARBP
          Length = 2106

 Score =  120 bits (300), Expect = 8e-26
 Identities = 75/181 (41%), Positives = 106/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL KDR F+R    K  +  + L +N++R++ +AK IF +R+   SDL P++++  
Sbjct: 954  EEWEQLLKDRAFMRTAA-KEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQ 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  LL R  V+  D     D I+RE                      AQ +ATLLF+  +
Sbjct: 1013 VRALLDRLVVVRGD-----DVISRE----------------------AQESATLLFKAQL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA + +++E+ L + AF  +L  IENRF +A+A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFRRLVTEYSLNKLAFQHVLGAIENRFSRAMANPGEMVGVLAAQSIGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[231][TOP]
>UniRef100_B4YT41 DNA-directed RNA polymerase (Fragment) n=1 Tax=Macrogyrus oblongus
           RepID=B4YT41_9COLE
          Length = 554

 Score =  119 bits (299), Expect = 1e-25
 Identities = 70/166 (42%), Positives = 98/166 (59%)
 Frame = +1

Query: 7   EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
           EW QL++DR+ LR ++F  GE+K+ L  N++R+IWN ++IF + +   +DLSP ++++GV
Sbjct: 417 EWEQLRRDREALR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGV 475

Query: 187 ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
             LL R  V+ + ED                           LS+ A  NATLLFQ  VR
Sbjct: 476 RELLQRC-VIVAGED--------------------------RLSKQANENATLLFQCLVR 508

Query: 367 ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAA 504
           ++L +K V  E RL+ +AF WL+ EIE RFQQA    GEMVGA AA
Sbjct: 509 STLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAA 554

[232][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
            RepID=Q1E2G9_COCIM
          Length = 1750

 Score =  119 bits (299), Expect = 1e-25
 Identities = 77/181 (42%), Positives = 105/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL+KDR FLR  V K  E  + L +N++R++ +AK  F +R+   SDL P+ ++  
Sbjct: 954  EEWEQLQKDRAFLR-SVAKEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPADVIPQ 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL R  V+  D     D I++E                      AQ NATLLF+  +
Sbjct: 1013 VQGLLDRLVVVRGD-----DVISKE----------------------AQENATLLFKAQL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA K ++ E+ L + AF  +L  IE+RF +A A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFKRLVVEYSLNKLAFQHVLGAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[233][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
            SOWgp RepID=C5PAJ4_COCP7
          Length = 1746

 Score =  119 bits (299), Expect = 1e-25
 Identities = 77/181 (42%), Positives = 105/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL+KDR FLR  V K  E  + L +N++R++ +AK  F +R+   SDL P+ ++  
Sbjct: 954  EEWEQLQKDRAFLR-SVAKEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPADVIPQ 1012

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL R  V+  D     D I++E                      AQ NATLLF+  +
Sbjct: 1013 VQGLLDRLVVVRGD-----DVISKE----------------------AQENATLLFKAQL 1045

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA K ++ E+ L + AF  +L  IE+RF +A A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 1046 RSRLAFKRLVVEYSLNKLAFQHVLGAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLN 1105

Query: 544  T 546
            T
Sbjct: 1106 T 1106

[234][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
            RepID=C4JY44_UNCRE
          Length = 1747

 Score =  119 bits (299), Expect = 1e-25
 Identities = 76/181 (41%), Positives = 105/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL+KDR FLR    K  E  + L +N++R++ +AK  F +R+   SDL P++++  
Sbjct: 906  EEWEQLQKDRVFLRSAA-KEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPAEVIPQ 964

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL R  V+  D     D I++E                      AQ NATLLF+  +
Sbjct: 965  VQALLERLVVVRGD-----DIISKE----------------------AQENATLLFKAQL 997

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA K ++ E+ L + AF  +L  IE+RF +A A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 998  RSRLAFKRLVVEYSLNKLAFQHVLGAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLN 1057

Query: 544  T 546
            T
Sbjct: 1058 T 1058

[235][TOP]
>UniRef100_Q1L5Y6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum
            RepID=Q1L5Y6_SOLLC
          Length = 773

 Score =  118 bits (296), Expect = 2e-25
 Identities = 72/174 (41%), Positives = 99/174 (56%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L+ DR  L  E+  TG+   PL VNI+RL+ NA++ F +     SD+ P +IV  V
Sbjct: 627  EVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAV 686

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D+                            LS  AQ NATL F + +R
Sbjct: 687  DKLQERLKVVPGDD---------------------------YLSMEAQKNATLFFNILLR 719

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
            ++LASK VL E+RL+R+AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPAT
Sbjct: 720  SALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 773

[236][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
          Length = 254

 Score =  118 bits (296), Expect = 2e-25
 Identities = 69/172 (40%), Positives = 99/172 (57%)
 Frame = +1

Query: 4   KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
           +E+A+L  DR  LR E+FK G +K+ L  N+ R+IWNA++ F +   + SDL+P K++ G
Sbjct: 111 EEFARLHDDRMILR-EIFKDGNSKVVLPCNLSRMIWNAQKTFKINTRNNSDLNPLKVIEG 169

Query: 184 VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
           VE L  +  V+   ED+                          +S+ AQ NATLL  +H+
Sbjct: 170 VEELCKKL-VIVDGEDS--------------------------ISKEAQYNATLLINIHL 202

Query: 364 RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGE 519
           R++LA K V+ EH L+ +AF WLL EIE R   +    GEMVGA +AQS+GE
Sbjct: 203 RSTLACKRVMEEHHLSSQAFDWLLGEIETRXNLSKVQPGEMVGALSAQSLGE 254

[237][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
            replicatum RepID=Q2PYS3_9FUNG
          Length = 981

 Score =  118 bits (296), Expect = 2e-25
 Identities = 73/170 (42%), Positives = 100/170 (58%), Gaps = 1/170 (0%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEA-KLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            E+ QL +DR  LR E+F    +  LPL VN++R+IW A+++FD R+  +SDL P  I++ 
Sbjct: 841  EYDQLYEDRRVLREEIFAAEHSFSLPLPVNLKRVIWKAQKLFDRRK--QSDLHPRHIIKS 898

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL RT V+   +                           ELS  AQ NATLLFQ+ V
Sbjct: 899  VQELLERTVVIRGKD---------------------------ELSVEAQANATLLFQILV 931

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 513
            R++LA++ VL E RL R+AF W++ EI++RF Q L   GEMVG  AAQSI
Sbjct: 932  RSTLATRRVLEEFRLDRRAFDWIIGEIDSRFNQTLVHPGEMVGTIAAQSI 981

[238][TOP]
>UniRef100_A1YIC4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces hyalinus
            RepID=A1YIC4_9FUNG
          Length = 1003

 Score =  118 bits (296), Expect = 2e-25
 Identities = 69/174 (39%), Positives = 102/174 (58%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+  L + R  LR +VF +G+++ PL VN++RLI NA R F + +    DL+P+ +++GV
Sbjct: 857  EFKYLAEARRILREDVFPSGDSRWPLPVNLKRLIANATRSFHIDRRKPVDLNPTVVIQGV 916

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            ++LL +  V+   +                            LS  AQ NATLLFQ+ ++
Sbjct: 917  QMLLDKLVVVRGYDT---------------------------LSILAQQNATLLFQILLK 949

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
            ++L+S+ V+ E++L   AF WLL EI+ RF QA+   GEMVG  AAQSIGEPAT
Sbjct: 950  STLSSRKVIDEYKLNSHAFEWLLGEIDQRFNQAIVHPGEMVGTIAAQSIGEPAT 1003

[239][TOP]
>UniRef100_B7SNX4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pisum sativum
            RepID=B7SNX4_PEA
          Length = 1010

 Score =  118 bits (295), Expect = 3e-25
 Identities = 70/169 (41%), Positives = 98/169 (57%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E  +L  DR  L  E+  TG++ LPL VN++RLIWNA++ F V     SD+ P +IV  +
Sbjct: 869  EVQKLDADRFQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAI 928

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R RV+  D+                            LS+ AQ NATLLF + +R
Sbjct: 929  DKLQERLRVVPGDD---------------------------LLSQEAQKNATLLFNILLR 961

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 513
            ++ ASK VL E+RL+R+AF W++ EIE+RF Q+L  +GEM+G  AAQSI
Sbjct: 962  STFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSI 1010

[240][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
          Length = 1748

 Score =  118 bits (295), Expect = 3e-25
 Identities = 71/181 (39%), Positives = 105/181 (58%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL K R FLR  V K  E  + L +N++R++  A+  F +R+   SDL P++++  
Sbjct: 951  EEWEQLLKARAFLR-TVAKEDEEMMQLPINVQRILEMARTTFRIREGTISDLHPAEVIPQ 1009

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL R  ++  D+                            +S+ AQ NATLLF+  +
Sbjct: 1010 VQALLDRLLIVRGDDP---------------------------ISQEAQENATLLFKAQL 1042

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA + +++E+ + + AF  ++  IE+RF +A APAGEMVG  AAQSIGEPATQMTLN
Sbjct: 1043 RSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKANAPAGEMVGVLAAQSIGEPATQMTLN 1102

Query: 544  T 546
            T
Sbjct: 1103 T 1103

[241][TOP]
>UniRef100_A1YIC6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neocallimastix
            frontalis RepID=A1YIC6_NEOFR
          Length = 1004

 Score =  118 bits (295), Expect = 3e-25
 Identities = 68/175 (38%), Positives = 95/175 (54%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+  L++DR   R  +FK G++  PL VN+ RLIWNA+ IF + +   SDL P  I   
Sbjct: 857  EEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIWNAQNIFSINKRKESDLHPLYICEK 916

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
             + LL R  V+  D+                           +LS+ AQ+N+T+ F   +
Sbjct: 917  RDELLKRLVVVRGDD---------------------------KLSKEAQINSTINFFALI 949

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
            +  L++K +L  + L + AF WL+ EIE RF QAL   GEMVG  AAQSIGEPAT
Sbjct: 950  KTCLSTKRILEYYHLNKAAFDWLIGEIEVRFNQALVQPGEMVGTIAAQSIGEPAT 1004

[242][TOP]
>UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus
            RepID=A1YIB9_ALLMA
          Length = 1008

 Score =  118 bits (295), Expect = 3e-25
 Identities = 71/175 (40%), Positives = 101/175 (57%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL++DR+ LRH +F  G+A+ PL  NI+R+IWNA+ +F + +   S+L P  +V  
Sbjct: 862  QEYRQLEEDRERLRH-IFPRGDARWPLPGNIQRIIWNAQNLFKIDKTKPSNLHPEYVVNE 920

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L  +  V+   +   V+A                           Q NATLL Q+ V
Sbjct: 921  VRKLCDKLMVIPGTDKISVEA---------------------------QRNATLLSQILV 953

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
            R++LA+K V+ E RL ++AF ++L EI  RF Q+L  AGEMVG  AAQSIGEPAT
Sbjct: 954  RSTLATKRVIEEFRLDKRAFDYVLGEIATRFAQSLVHAGEMVGIIAAQSIGEPAT 1008

[243][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
            RepID=Q0D054_ASPTN
          Length = 1742

 Score =  117 bits (294), Expect = 4e-25
 Identities = 71/181 (39%), Positives = 103/181 (56%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL KDR FLR  V K  E  + L +N++R++  A+  F +R+   SDL P++++  
Sbjct: 952  EEWEQLLKDRAFLR-TVAKEDEEMMQLPINVQRILETARSTFRIREGTISDLHPAEVIPQ 1010

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL R +++  D+   V+A                           Q NATLLF+  +
Sbjct: 1011 VQSLLDRLKIVRGDDIISVEA---------------------------QENATLLFKAQL 1043

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA + +++E+ + + AF  +L  IE RF +A A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 1044 RSRLAFRRLVTEYSMNKLAFQHVLGAIETRFAKAAASPGEMVGVLAAQSIGEPATQMTLN 1103

Query: 544  T 546
            T
Sbjct: 1104 T 1104

[244][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
            RepID=C5FCL2_NANOT
          Length = 1748

 Score =  117 bits (293), Expect = 6e-25
 Identities = 76/181 (41%), Positives = 101/181 (55%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL KDR FLR  V K  +  + L +NI+R++ +AK  F +R    SDL P+++V  
Sbjct: 953  EEWEQLLKDRAFLR-TVVKEDDEMMQLPINIQRILESAKTTFRIRDGTISDLHPAEVVPQ 1011

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  LL R  V+  D+                            LS  AQ NATLLF+  +
Sbjct: 1012 VRQLLDRLLVVRGDDP---------------------------LSREAQENATLLFKAQL 1044

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA + ++ E+ L + AF  +L  IE+RF +A A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 1045 RSRLAFRRLVVEYSLNKLAFQHVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLN 1104

Query: 544  T 546
            T
Sbjct: 1105 T 1105

[245][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CNZ4_ASPCL
          Length = 1765

 Score =  117 bits (293), Expect = 6e-25
 Identities = 72/181 (39%), Positives = 103/181 (56%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +EW QL KDR FLR  V K  +  + L +N++R++  A+  F +R+   SDL P+++V  
Sbjct: 953  EEWEQLLKDRAFLR-SVVKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEVVPQ 1011

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V+ LL R  V+  D+                            +S  AQ NATLLF+  +
Sbjct: 1012 VQSLLDRLLVVRGDDP---------------------------ISHEAQENATLLFKAQL 1044

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA + +++E+ + + AF  +L  IE+RF +A A  GEMVG  AAQSIGEPATQMTLN
Sbjct: 1045 RSRLAFRRLVTEYSMNKLAFQHVLGAIESRFAKAAASPGEMVGVLAAQSIGEPATQMTLN 1104

Query: 544  T 546
            T
Sbjct: 1105 T 1105

[246][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
            RepID=UPI000023F34A
          Length = 1758

 Score =  115 bits (289), Expect = 2e-24
 Identities = 71/182 (39%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRH-EVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVR 180
            +EW +L  DR  +R     K  E  + L +NI R+I +AKR+F+V+ NDRS+L PS ++ 
Sbjct: 945  EEWERLVHDRTRIRAINRAKGNEEMMQLPLNITRIIESAKRVFNVKANDRSNLRPSDVIP 1004

Query: 181  GVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVH 360
             V+ +L   +++   +   ++A A                           NA++LF+  
Sbjct: 1005 AVQNMLDNMKIVRGTDPISLEADA---------------------------NASILFKGL 1037

Query: 361  VRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTL 540
            +R+ LA K V+ EHRL R AF  +L E++NR+ +A    GEMVG  AAQSIGEPATQMTL
Sbjct: 1038 LRSRLAFKEVVKEHRLNRLAFDHILGELQNRWDRAFVNPGEMVGVLAAQSIGEPATQMTL 1097

Query: 541  NT 546
            NT
Sbjct: 1098 NT 1099

[247][TOP]
>UniRef100_Q2TUN5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ephedra viridis
            RepID=Q2TUN5_EPHVI
          Length = 1013

 Score =  115 bits (289), Expect = 2e-24
 Identities = 69/169 (40%), Positives = 94/169 (55%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGV 186
            E+ +L+ DR  L  E+  TGE   PL VN++RLIWNA++IF V     SD+ P +IV  +
Sbjct: 872  EYKKLQLDRRQLGMEIAPTGENSWPLPVNLKRLIWNAQKIFKVDPRKTSDMQPLEIVDTI 931

Query: 187  ELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVR 366
            + L  R +V+  D+                            LS  AQ NATL F + +R
Sbjct: 932  DKLQERLKVVPGDDP---------------------------LSFEAQKNATLFFNILLR 964

Query: 367  ASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 513
            +  ASK VL E+ LTR+AF W++ E+ENRF Q+L   GEM+G  AAQSI
Sbjct: 965  SVFASKRVLKEYHLTREAFDWVIGEVENRFLQSLVAPGEMIGCVAAQSI 1013

[248][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
            RepID=C1MI48_9CHLO
          Length = 1694

 Score =  115 bits (288), Expect = 2e-24
 Identities = 70/186 (37%), Positives = 107/186 (57%), Gaps = 6/186 (3%)
 Frame = +1

Query: 7    EWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQN------DRSDLSPS 168
            EW QLK DR  L H+V  TG+  + L VN++R++WNA++ + + ++      +R +L   
Sbjct: 930  EWEQLKLDRAEL-HKVMTTGDPSVHLPVNLKRIVWNAQKNYGLVKDTSAPGRERDELQAV 988

Query: 169  KIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLL 348
             ++  V  +L+   V+                 P G           ELS  AQ N+T+L
Sbjct: 989  NVIESVRSMLNGLTVV-----------------PGGD----------ELSLEAQRNSTIL 1021

Query: 349  FQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPAT 528
            F   VR++L++K V+ + +L+  AF W++ E+E+RF+ ALAP G+ +G  AAQSIGEPAT
Sbjct: 1022 FFALVRSTLSAKRVMKDFKLSPAAFNWVVGEVESRFKMALAPPGDGIGTVAAQSIGEPAT 1081

Query: 529  QMTLNT 546
            QMTLNT
Sbjct: 1082 QMTLNT 1087

[249][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
            RepID=Q6FQS9_CANGA
          Length = 1715

 Score =  115 bits (288), Expect = 2e-24
 Identities = 74/181 (40%), Positives = 101/181 (55%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL KDR FLR  +F  GE+  PL VNI R+I NA++ F +     SDL+  +I+  
Sbjct: 931  EEYKQLVKDRRFLR-TIFSDGESSWPLPVNIRRIIQNAQQTFRIDHTKPSDLTIPEIINS 989

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            V  L  R  VL S                             E+ + AQ +A  LF   +
Sbjct: 990  VRDLQDRLLVLRSK---------------------------SEIIKKAQDDAVTLFCCLL 1022

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLN 543
            R+ LA++ VL E+RLT++AF W+L  +E +F +++   GEMVG  AAQSIGEPATQMTLN
Sbjct: 1023 RSRLATRRVLQEYRLTKEAFEWVLNNVEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLN 1082

Query: 544  T 546
            T
Sbjct: 1083 T 1083

[250][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
            aggregatum RepID=Q2PYS6_9FUNG
          Length = 1016

 Score =  115 bits (288), Expect = 2e-24
 Identities = 71/170 (41%), Positives = 95/170 (55%)
 Frame = +1

Query: 4    KEWAQLKKDRDFLRHEVFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRG 183
            +E+ QL+KDR+ LR  +FK G +  PL VN++RLIWNA+  F+V     +DL P  I   
Sbjct: 874  QEFEQLRKDRETLRWTIFKDGSSSWPLPVNLKRLIWNAQNQFEVGPRKPTDLHPLHITES 933

Query: 184  VELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHV 363
            VE LL +  V+  ++   V+A                           Q NATLLFQ+ V
Sbjct: 934  VEQLLDKLVVVRGNDPLSVEA---------------------------QKNATLLFQILV 966

Query: 364  RASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSI 513
            R++LA++ VL E  L  K+F  L+ EIE RF QA+A  GEMVG  AAQSI
Sbjct: 967  RSTLATRRVLEEFHLNSKSFQHLIGEIEMRFNQAIAHPGEMVGTIAAQSI 1016