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[1][TOP] >UniRef100_B1XPV3 Ribonuclease II n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XPV3_SYNP2 Length = 670 Score = 110 bits (274), Expect = 7e-23 Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 3/166 (1%) Frame = +2 Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA- 205 YP FS ++ + ++ LSA P ++ G R DL HL +Y +D ST E+DD +S E Sbjct: 236 YPRKFSQKVLDVSHARLSASPGDTDEGN---RLDLTHLKTYTIDDESTSEIDDGLSIETL 292 Query: 206 --DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379 ++W+HIAD + L PG+ L EA RRS +LYLPT I+M P ELA +SL Sbjct: 293 EDGLHKVWIHIADPTRLLSPGDELDLEARRRSTSLYLPTGMISMFPEELATGPMSL---- 348 Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 + ALSFG + E+G++ D ++ PS ++ +RLTY+ Sbjct: 349 ------RQGQVCAALSFGVLLTENGAIADYEITPSWVKPTYRLTYD 388 [2][TOP] >UniRef100_B8HWY4 Exoribonuclease II n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HWY4_CYAP4 Length = 671 Score = 108 bits (269), Expect = 3e-22 Identities = 72/175 (41%), Positives = 97/175 (55%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S P F+ + EAA+ L++ P+ + +A R +L L Y +D ST E+ Sbjct: 230 NLFLRRSQI-PLQFAARVLEAAHHCLTSPPVDVD---AAHRVNLTGLKVYTIDDESTREI 285 Query: 182 DDAMSWE---ADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S E RLW+HIAD S WL PG+ L EA RRS T+YLPT I M P ELA Sbjct: 286 DDGLSLEFLPEGQQRLWIHIADPSRWLTPGDELDLEARRRSTTIYLPTGMIPMFPPELAT 345 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL + ALSFG T+ + G++ D Q+ PS I+ +RLTYE Sbjct: 346 GPMSL----------TQGQVCCALSFGITLDKTGAVVDYQLAPSQIKPTYRLTYE 390 [3][TOP] >UniRef100_B7K7A9 Exoribonuclease II n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7A9_CYAP7 Length = 676 Score = 107 bits (267), Expect = 5e-22 Identities = 72/175 (41%), Positives = 93/175 (53%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S YP FS + E A L + P P R DL HL Y +D ST E+ Sbjct: 233 NLFLRRSS-YPVQFSKRVLEVAKHCLESPP----PDPDVVRLDLTHLKIYTIDDESTKEI 287 Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S E T RLW+HIAD S + PG+ L EA +RS +LYLPT I+M P ELA Sbjct: 288 DDGLSVEQLENGTTRLWIHIADPSRLVSPGDELDLEARKRSTSLYLPTGMISMFPPELAT 347 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL + ALSFG + EDGS+ D + SL++ +RLTY+ Sbjct: 348 GPMSL----------VQGQICPALSFGVILKEDGSVEDYIIHASLVKPTYRLTYD 392 [4][TOP] >UniRef100_B4W5F1 RNB-like protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4W5F1_9CYAN Length = 671 Score = 107 bits (267), Expect = 5e-22 Identities = 74/175 (42%), Positives = 94/175 (53%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S YP F E+ + L + P P R DL HL Y VD ST E+ Sbjct: 228 NLFLRRSS-YPVHFRREVLDLVQHYLDSPP----PDPDQDRLDLTHLKVYTVDDESTSEI 282 Query: 182 DDAMSWEA-DTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S E D G RLW+HIAD + ++P + L EA RRS TLYLPT I+M P ELA Sbjct: 283 DDGLSLEQLDDGKERLWIHIADPTRLVRPDDELDREARRRSTTLYLPTGMISMFPAELAT 342 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL E LSFG + EDGS+ + ++ PSLI+ +RLTYE Sbjct: 343 GPMSL----------VEGQVCPTLSFGVILDEDGSVQEYKIHPSLIKPTYRLTYE 387 [5][TOP] >UniRef100_Q31P65 Exoribonuclease II n=2 Tax=Synechococcus elongatus RepID=Q31P65_SYNE7 Length = 670 Score = 105 bits (261), Expect = 2e-21 Identities = 69/175 (39%), Positives = 94/175 (53%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S P TF + + L A P+ + R DL HL Y +D ST E+ Sbjct: 230 NLFLRRSQV-PTTFPVAVMDVVQTCLDAPPVDRDR-----RQDLSHLKVYTIDDESTREI 283 Query: 182 DDAMSWEA-DTGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S + GRL WVH+AD + ++PG+ L EA RRS T+YLPT + M PLELA Sbjct: 284 DDGLSCQRLSDGRLQLWVHVADPTRLIEPGDALDLEARRRSTTIYLPTGMVPMFPLELAA 343 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL + A ALSFG + E G++ +++PS IR +RLTYE Sbjct: 344 GPMSL----------VQGQACCALSFGICLDEQGAIASYEIVPSQIRPTYRLTYE 388 [6][TOP] >UniRef100_Q2JIR4 Exoribonuclease, VacB/RNB family n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JIR4_SYNJB Length = 686 Score = 102 bits (255), Expect = 1e-20 Identities = 63/165 (38%), Positives = 86/165 (52%), Gaps = 3/165 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS---WE 202 P F ++ LLS P R DL HL +Y +D AST ++DDA+S W Sbjct: 256 PTQFPKAVERYTQALLSQPP---SFWDPHLRQDLTHLHTYTIDDASTRDIDDALSVEFWS 312 Query: 203 ADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 D +LW+HIAD S W++ G+PL EA +R ++YLP I M P EL+ +SL Sbjct: 313 DDAVKLWIHIADPSCWVQWGDPLDLEARKRGTSVYLPERVIPMFPPELSTGPMSL----- 367 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 V E ALSFG + DG + D ++ S I+ +RLTYE Sbjct: 368 ---VQGEVRP--ALSFGILLGSDGQIRDSEICLSQIKVTYRLTYE 407 [7][TOP] >UniRef100_B0JUR2 Ribonuclease II n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JUR2_MICAN Length = 671 Score = 102 bits (253), Expect = 2e-20 Identities = 72/175 (41%), Positives = 95/175 (54%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S YP FS ++ + A L P ++V R DL H Y +D ST E+ Sbjct: 228 NLFLRRSS-YPVQFSKKVLDVARLNLLNPPADADVNN---RLDLTHQKIYTIDDESTEEI 283 Query: 182 DDAMSWE--ADTG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S E AD G RLW+HIAD S + P + L EA RRS +LYLPT + M PLELA Sbjct: 284 DDGLSVEMLADGGHRLWIHIADPSRLVLPDDELDLEARRRSTSLYLPTGMVPMFPLELAA 343 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL + ALSFG + E G++ D ++ PS I+ +RLTYE Sbjct: 344 GPMSL----------VQGKLCPALSFGVILDETGAIADYRIHPSTIKPTYRLTYE 388 [8][TOP] >UniRef100_A8YM56 Similar to Q4BZP1_CROWT Exoribonuclease II n=1 Tax=Microcystis aeruginosa PCC 7806 RepID=A8YM56_MICAE Length = 671 Score = 102 bits (253), Expect = 2e-20 Identities = 72/175 (41%), Positives = 95/175 (54%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S YP FS ++ + A L P ++V R DL H Y +D ST E+ Sbjct: 228 NLFLRRSS-YPVQFSKKVLDVARLNLLNPPADADVNN---RLDLTHQKIYTIDDESTEEI 283 Query: 182 DDAMSWE--ADTG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S E AD G RLW+HIAD S + P + L EA RRS +LYLPT + M PLELA Sbjct: 284 DDGLSVEILADGGHRLWIHIADPSRLVLPDDELDLEARRRSTSLYLPTGMVPMFPLELAA 343 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL + ALSFG + E G++ D ++ PS I+ +RLTYE Sbjct: 344 GPMSL----------VQGKLCPALSFGVILDETGAIADYRIHPSTIKPTYRLTYE 388 [9][TOP] >UniRef100_Q2JV50 Exoribonuclease, VacB/RNB family n=1 Tax=Synechococcus sp. JA-3-3Ab RepID=Q2JV50_SYNJA Length = 683 Score = 100 bits (250), Expect = 4e-20 Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 3/165 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P F E++ A LL P ++ R DL HL +Y +D AST ++DDA+S E ++ Sbjct: 256 PTQFPKEVERYAQTLLGGPPPFLDL---PLRRDLTHLHTYTIDDASTRDIDDALSVEFES 312 Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 +LW+HIAD S W++ G+PL EA +R ++YLP I M P EL+ +SL Sbjct: 313 DDEVKLWIHIADPSCWVQWGDPLDLEARKRGTSVYLPERVIPMFPSELSTGPMSL----- 367 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 V E ALSFG + DG++ D ++ S IR +RLTY+ Sbjct: 368 ---VQGEVRP--ALSFGIRLGSDGAVRDYEICLSQIRVNYRLTYD 407 [10][TOP] >UniRef100_P73177 Uncharacterized ribonuclease sll1290 n=1 Tax=Synechocystis sp. PCC 6803 RepID=RN2H_SYNY3 Length = 666 Score = 100 bits (249), Expect = 6e-20 Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 3/166 (1%) Frame = +2 Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE-- 202 YP F ++ + A+ L+ P P R DL L +Y +D ST E+DD +S E Sbjct: 236 YPNQFPAKVSDVAHAYLTNPP----PDPDQERFDLTTLKTYTIDDESTSEIDDGLSVETL 291 Query: 203 ADTG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379 AD G RLW+H+AD + L P + L EA +RS +LYLPT I+M P ELA +SL Sbjct: 292 ADGGHRLWIHVADPTRLLSPNDELDLEARKRSTSLYLPTGMISMFPPELATGPMSL---- 347 Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 + +ALSFG T+ E G++ D + PS ++ +RLTYE Sbjct: 348 ------LQGQRCVALSFGVTLDEVGAVRDFTIAPSWVKPTYRLTYE 387 [11][TOP] >UniRef100_B4WFI8 RNB-like protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WFI8_9SYNE Length = 681 Score = 99.8 bits (247), Expect = 1e-19 Identities = 63/164 (38%), Positives = 84/164 (51%), Gaps = 3/164 (1%) Frame = +2 Query: 35 PTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA--- 205 PT PE A+ + P A E R DL HL Y +D ST E+DD +S E Sbjct: 239 PTQFPEEVSASVAQIIESPPAEE----GDRVDLTHLKVYTIDDESTQEIDDGLSCETLAD 294 Query: 206 DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 +LW+HIAD + W+ L TEA RR T+YLPT I M P ELA +SL Sbjct: 295 GRQKLWIHIADPTYWISLNGILDTEARRRCTTVYLPTGVIPMFPFELAAGPMSL------ 348 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 + ALSF +AEDGS+ + + PS+++ +RLTY+ Sbjct: 349 ----VQGQICNALSFSVLLAEDGSVAEYSIQPSVVKPTYRLTYD 388 [12][TOP] >UniRef100_Q8YNW1 Ribonuclease II n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YNW1_ANASP Length = 686 Score = 99.4 bits (246), Expect = 1e-19 Identities = 69/175 (39%), Positives = 88/175 (50%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S P F ++ E A L P + R DL HL Y VD ST E+ Sbjct: 244 NLFLRRSSI-PVQFPSKVLEVAQQRLDFPPTDLDTN----RLDLTHLKVYTVDDESTTEI 298 Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +SWE D RLWVHIAD + +L P + L EA +R T+YLPT I M P LA Sbjct: 299 DDGLSWEKLPDDRERLWVHIADPTRYLAPEDDLDLEARKRGSTVYLPTGMIPMFPEVLAT 358 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL + ALSFG + G++ D + PSLI+ +RLTYE Sbjct: 359 GPMSL----------VQGRVCCALSFGVVLDGTGAVQDFTIHPSLIKPTYRLTYE 403 [13][TOP] >UniRef100_Q3MDJ0 Ribonuclease II n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3MDJ0_ANAVT Length = 686 Score = 99.4 bits (246), Expect = 1e-19 Identities = 69/175 (39%), Positives = 88/175 (50%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S P F ++ E A L P + R DL HL Y VD ST E+ Sbjct: 244 NLFLRRSSI-PVQFPSKVLEVAQQRLDFPPTDLDTN----RLDLTHLKVYTVDDESTTEI 298 Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +SWE RLWVHIAD + +L P + L EA +R T+YLPT I M P LA Sbjct: 299 DDGLSWEKLPDSRERLWVHIADPTRYLAPEDDLDLEARKRGSTVYLPTGMIPMFPEILAT 358 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL + ALSFG + E G++ D + PSLI+ +RLTYE Sbjct: 359 GPMSL----------VQGRVCCALSFGVVLDETGAVEDFTIHPSLIKPTYRLTYE 403 [14][TOP] >UniRef100_A0ZC94 Ribonuclease II n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZC94_NODSP Length = 686 Score = 99.0 bits (245), Expect = 2e-19 Identities = 63/165 (38%), Positives = 81/165 (49%), Gaps = 3/165 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205 P F ++ E A L P + R DL HL Y +D ST E+DD +SWE Sbjct: 253 PVQFPSKVLEVAQQRLDFPPTDLDTN----RLDLSHLKVYTIDDESTTEIDDGLSWEILP 308 Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 RLWVHIAD + WL P + L EA +R T+YLPT + M P LA +SL Sbjct: 309 DGRERLWVHIADPTRWLVPEDELDLEARKRGSTVYLPTGMVPMFPELLATGPMSL----- 363 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 + ALSFG + E G + D + PS I+ +RLTYE Sbjct: 364 -----VQGRISCALSFGVVLDESGGVEDYTIHPSFIKPTYRLTYE 403 [15][TOP] >UniRef100_Q7NK64 Ribonuclease II n=1 Tax=Gloeobacter violaceus RepID=Q7NK64_GLOVI Length = 663 Score = 98.6 bits (244), Expect = 2e-19 Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 ++ LR S P F + E A LL P A R D L Y +D ST E+ Sbjct: 230 NIHLRRSGI-PVHFGTPVSEYARKLLENPP-----ADPASRRDFGRLAIYTIDDESTREI 283 Query: 182 DDAMSWEA-DTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S E + GR LW+HIAD + W++PG+PL EA RR+ ++YLPT I M P ELA Sbjct: 284 DDGLSLEMLEDGREKLWIHIADPTRWVQPGDPLEAEARRRATSVYLPTGAIPMFPPELAT 343 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL + ALSFG + DG++ + +V P+L+R + +TYE Sbjct: 344 GPMSLLPGQLNC----------ALSFGAIIGPDGAVENFEVTPALVRTVYPVTYE 388 [16][TOP] >UniRef100_Q10Y88 Exoribonuclease II n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10Y88_TRIEI Length = 674 Score = 98.6 bits (244), Expect = 2e-19 Identities = 70/175 (40%), Positives = 92/175 (52%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S P FS ++ E A L + P P R DL HL Y +D ST E+ Sbjct: 230 NLYLRRSQI-PKCFSTKVLEVAKSCLQSLP----PDPETNRLDLTHLKVYTIDDESTQEI 284 Query: 182 DDAMSWE-ADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S E + G R+WVHIAD + L PG+ L EA RR+ TLYLPT + M P ELA Sbjct: 285 DDGLSIEFLEDGQHRIWVHIADPTRLLIPGDELDLEARRRTTTLYLPTGMVPMFPPELAT 344 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL + ALSFG + E G++ D + SLI+ +RLTY+ Sbjct: 345 GPMSL----------IQGQVCRALSFGILLDESGAVIDYIIHASLIKPTYRLTYD 389 [17][TOP] >UniRef100_B1WYB0 Ribonuclease II n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WYB0_CYAA5 Length = 670 Score = 97.4 bits (241), Expect = 5e-19 Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 3/165 (1%) Frame = +2 Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA- 205 YP F ++ + A+ L P ++ + R DL HL Y +D ST E+DD +S E Sbjct: 236 YPLNFPQKVLDVASSYLQTLPPDAD----SDRLDLTHLKVYTIDDESTEEIDDGLSVEYL 291 Query: 206 --DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379 D +LW+HIAD + + PG+ L EA +RS TLYLPT I+M P+ELA +SL Sbjct: 292 DDDRVKLWIHIADPTRLVTPGDELDLEARKRSTTLYLPTGMISMFPVELATGPMSL---- 347 Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + ALSFG + G++ D + SLI+ +RLTY Sbjct: 348 ------RQGKLCAALSFGVILDSHGAILDYSIHASLIKPTYRLTY 386 [18][TOP] >UniRef100_A4S361 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S361_OSTLU Length = 645 Score = 97.4 bits (241), Expect = 5e-19 Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 4/157 (2%) Frame = +2 Query: 59 EAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA--DTG--RLWV 226 +A +LS P+ ++ +A R DL +L +YA+D A T EVDDA+S EA D G R+WV Sbjct: 216 KACAEVLSNEPVDAD---AASRVDLTYLRAYAIDDAETVEVDDAVSAEALGDDGQIRVWV 272 Query: 227 HIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEE 406 HIAD + W+ G PL A +R+ TLY PTE + M PLE+A +SL S + Sbjct: 273 HIADPTRWIPLGSPLDAIARQRATTLYYPTEIVPMFPLEIAAGPMSLG--------SRSD 324 Query: 407 NAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 A A++ + +G++ D ++MPS ++ R TY+ Sbjct: 325 VASEAMTVRADIDREGNIMDFEIMPSFVKLDRRWTYD 361 [19][TOP] >UniRef100_Q8DL46 Ribonuclease II n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DL46_THEEB Length = 674 Score = 96.7 bits (239), Expect = 8e-19 Identities = 60/161 (37%), Positives = 87/161 (54%), Gaps = 2/161 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA--DTG 214 FS ++ A+ L++ P + + R DL HL Y +D ST E+DD +S E D Sbjct: 242 FSAKVLAVAHERLTSPPTDID---APLRRDLTHLKVYTIDDESTQEIDDGLSLEVIGDRQ 298 Query: 215 RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHV 394 +LW+HIAD + W+ + L EA RR+ T+YLPT I M P ELA +SL A Sbjct: 299 KLWIHIADPTRWVMVDDLLDQEARRRATTVYLPTGMIPMFPTELATGPMSLVAG------ 352 Query: 395 SEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 ALSFG +A+ G + + ++ PS IR +RL+Y+ Sbjct: 353 ----QTCCALSFGILLADSGEVLEYEICPSWIRPTYRLSYD 389 [20][TOP] >UniRef100_B2J0D2 Ribonuclease II n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J0D2_NOSP7 Length = 686 Score = 96.7 bits (239), Expect = 8e-19 Identities = 66/175 (37%), Positives = 86/175 (49%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S P F ++ E A L P+ S+ R DL HL Y +D +T E+ Sbjct: 244 NLFLRRSSI-PIQFPNKVLEVAQQRLDFPPIDSDTN----RLDLTHLKVYTIDDETTTEI 298 Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +SWE RLWVHIAD + WL P + L EA +R T+YLPT I M P LA Sbjct: 299 DDGLSWEILPDGRERLWVHIADPTRWLVPEDELDLEARKRGSTVYLPTGMIPMFPEVLAT 358 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL + ALSFG + G + D + S I+ +RLTYE Sbjct: 359 GPMSL----------IQGRVCCALSFGIILGTTGGVEDYSIHTSSIKPTYRLTYE 403 [21][TOP] >UniRef100_B7JW30 Exoribonuclease II n=1 Tax=Cyanothece sp. PCC 8801 RepID=B7JW30_CYAP8 Length = 671 Score = 95.9 bits (237), Expect = 1e-18 Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 3/174 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S YP F ++ + A L+ P + R DL HL Y +D ST E+ Sbjct: 228 NLFLRRSS-YPMQFPKKVLDVAQSFLTLPPPDQDED----RLDLTHLKVYTIDDESTEEI 282 Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S E D +LW+HIAD + + PG+ L EA RR+ TLYLPT I+M P+ELA Sbjct: 283 DDGLSVEFLSDDQVKLWIHIADPTRLVSPGDELDLEARRRTTTLYLPTGMISMFPVELAT 342 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 +SL + +LSF T+ +G++ D + SLI+ +RLTY Sbjct: 343 GPMSL----------IQGKICPSLSFAVTLDNEGAVLDYSIHASLIKPTYRLTY 386 [22][TOP] >UniRef100_C7QT24 Exoribonuclease II n=1 Tax=Cyanothece sp. PCC 8802 RepID=C7QT24_CYAP0 Length = 671 Score = 95.9 bits (237), Expect = 1e-18 Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 3/174 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR S YP F ++ + A L+ P + R DL HL Y +D ST E+ Sbjct: 228 NLFLRRSS-YPMQFPKKVLDVAQSFLTLPPPDQDED----RLDLTHLKVYTIDDESTEEI 282 Query: 182 DDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S E D +LW+HIAD + + PG+ L EA RR+ TLYLPT I+M P+ELA Sbjct: 283 DDGLSVEFLSDDQVKLWIHIADPTRLVSPGDELDLEARRRTTTLYLPTGMISMFPVELAT 342 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 +SL + +LSF T+ + G++ D + SLI+ +RLTY Sbjct: 343 GPMSL----------IQGKICPSLSFAVTLDDQGAVLDYSIHASLIKPTYRLTY 386 [23][TOP] >UniRef100_A3IXH4 Ribonuclease II n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IXH4_9CHRO Length = 670 Score = 95.9 bits (237), Expect = 1e-18 Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%) Frame = +2 Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA- 205 YP F ++ + ++ L P ++ + R DL HL Y +D ST E+DD +S E Sbjct: 236 YPLNFPQKVLDVSSSYLQTLPPDAD----SDRLDLTHLKVYTIDDESTKEIDDGLSVEYL 291 Query: 206 --DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379 + +LW+HIAD + + PG+ L EA +RS TLYLPT I+M P+ELA +SL Sbjct: 292 DDERVKLWIHIADPTRLVTPGDELDLEARKRSTTLYLPTGMISMFPVELATGPMSL---- 347 Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + ALSFG + +G++ D + S+I+ +RLTY Sbjct: 348 ------RQGELCAALSFGVVLDSEGAVADFSIHASVIKPTYRLTY 386 [24][TOP] >UniRef100_A0YR63 Ribonuclease II n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YR63_9CYAN Length = 672 Score = 95.5 bits (236), Expect = 2e-18 Identities = 69/175 (39%), Positives = 89/175 (50%), Gaps = 3/175 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L LR + P F ++ E A LL + P P R DL L Y +D ST E+ Sbjct: 230 NLSLRRTQI-PTQFPMQVFEVAQQLLDSQP----PDPDTDRLDLTDLKVYTIDDESTREI 284 Query: 182 DDAMSWE--AD-TGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELAR 352 DD +S E AD RLW+HIAD + L PG+ L EA RR+ T+YLPT I M P ELA Sbjct: 285 DDGLSVEFMADGQQRLWIHIADPTRLLCPGDELDLEARRRTTTVYLPTGIIPMFPSELAT 344 Query: 353 DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +SL E ALSFG + E G + D + S I+ +RLTY+ Sbjct: 345 GPMSL----------VEGKLCCALSFGVILDESGQVKDYSIHASTIKPTYRLTYD 389 [25][TOP] >UniRef100_B5W9J3 Exoribonuclease II n=1 Tax=Arthrospira maxima CS-328 RepID=B5W9J3_SPIMA Length = 672 Score = 95.1 bits (235), Expect = 2e-18 Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRR 292 R DL HL Y +D ST E+DD +S E T ++W+HIAD + + PG+ L EA RR Sbjct: 266 RFDLTHLKVYTIDDESTREIDDGVSLEFLEDGTQKIWIHIADPTRLITPGDELDLEARRR 325 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 + ++YLPT I M P ELA +SL + ALSFG + EDGSL D Sbjct: 326 TTSVYLPTGMIPMFPPELATGPMSL----------VQGKICCALSFGVVLNEDGSLKDYS 375 Query: 473 VMPSLIRRPWRLTYE 517 + S+I+ +RLTY+ Sbjct: 376 IHTSIIKPTYRLTYD 390 [26][TOP] >UniRef100_Q4BZP1 Exoribonuclease II n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4BZP1_CROWT Length = 670 Score = 94.4 bits (233), Expect = 4e-18 Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 3/165 (1%) Frame = +2 Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS---W 199 YP F ++ + A+ + P ++ R DL L Y +D ST E+DD +S Sbjct: 236 YPVNFPQKVLDVASSSVQTLPPDAD----GDRLDLTRLKVYTIDDESTEEIDDGLSVEYL 291 Query: 200 EADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379 E D +LW+HIAD + + PG+ L EA +RS TLYLPT I+M PLELA +SL Sbjct: 292 ENDQVKLWIHIADPTRLVTPGDELDLEARKRSTTLYLPTGMISMFPLELAAGPMSLC--- 348 Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + ALSFG + +G++ D + SLI+ +RLTY Sbjct: 349 -------QGQLCAALSFGVILDSEGAVVDYSIHASLIKPTYRLTY 386 [27][TOP] >UniRef100_Q010V1 Ribonuclease II (ISS) n=1 Tax=Ostreococcus tauri RepID=Q010V1_OSTTA Length = 758 Score = 93.6 bits (231), Expect = 7e-18 Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 3/165 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-D 208 P F E + +L+ P ++V S+ R DL HL +YA+D A T EVDDA+S E+ D Sbjct: 322 PIDFPQEALDECASILANPP--ADVDASS-RVDLTHLSAYAIDDAGTVEVDDAVSAESLD 378 Query: 209 TGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 GR+ WVH+AD S W+ L A R+ TLY PTE + M PL+++ +SL A Sbjct: 379 EGRIRVWVHVADPSRWVTMNSTLDITARGRATTLYYPTELVPMFPLDISAGPMSLGA--- 435 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +A SE A++ V DG++ D + PSL++ R TY+ Sbjct: 436 NAEASE------AMTIRADVDADGNIEDFDITPSLVKIDRRWTYD 474 [28][TOP] >UniRef100_A9RXJ0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RXJ0_PHYPA Length = 717 Score = 90.5 bits (223), Expect = 6e-17 Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 3/165 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW-EAD 208 P FS E EAA +++ PL + + R DL HL Y +DS E+DD +S Sbjct: 288 PIEFSSECVEAAQSVMTNPPLDTNL---VNRVDLTHLKVYTIDSEDADEIDDGLSAIRLP 344 Query: 209 TGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 GR+ W+H+AD + W+ P L EA RRS ++YLPT + M P+ LA +SL G Sbjct: 345 DGRIKVWIHVADPTRWVPPMHLLDKEAKRRSTSIYLPTGAVPMFPMNLASTVMSL--RQG 402 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 H E L +S F DGS+ + +VM S I+ +RL+Y+ Sbjct: 403 H------EACALTVSIIFHC--DGSIAESEVMCSTIKPTYRLSYD 439 [29][TOP] >UniRef100_A8IJ46 3'-5' exoribonuclease II (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8IJ46_CHLRE Length = 699 Score = 90.5 bits (223), Expect = 6e-17 Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 3/164 (1%) Frame = +2 Query: 35 PTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214 P F +++ AA LL + P + G R DL HL + +D A+T EVDD +S E G Sbjct: 340 PDFPADVERAAQALLDSPPPDPDAGN---REDLTHLRCFTIDDAATTEVDDGLSLERLAG 396 Query: 215 ---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 R+W+H+AD + W+ P L +R TLYLP ++ M P LA SL A Sbjct: 397 GGTRIWIHVADPTRWISPDTQLDLAGRQRGRTLYLPWGSVPMFPRALAEGPFSLRAG--- 453 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 ALS G + DGS+ +V PS + +LTY+ Sbjct: 454 -------QVCDALSVGVELRPDGSVASARVAPSRVLVSHKLTYD 490 [30][TOP] >UniRef100_A3RLY2 Chloroplast ribonuclease n=1 Tax=Chlamydomonas reinhardtii RepID=A3RLY2_CHLRE Length = 1083 Score = 90.5 bits (223), Expect = 6e-17 Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 3/164 (1%) Frame = +2 Query: 35 PTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214 P F +++ AA LL + P + G R DL HL + +D A+T EVDD +S E G Sbjct: 577 PDFPADVERAAQALLDSPPPDPDAGN---REDLTHLRCFTIDDAATTEVDDGLSLERLAG 633 Query: 215 ---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 R+W+H+AD + W+ P L +R TLYLP ++ M P LA SL A Sbjct: 634 GGTRIWIHVADPTRWISPDTQLDLAGRQRGRTLYLPWGSVPMFPRALAEGPFSLRAG--- 690 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 ALS G + DGS+ +V PS + +LTY+ Sbjct: 691 -------QVCDALSVGVELRPDGSVASARVAPSRVLVSHKLTYD 727 [31][TOP] >UniRef100_A0LG74 Exoribonuclease II n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG74_SYNFM Length = 680 Score = 90.1 bits (222), Expect = 8e-17 Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Frame = +2 Query: 41 FSPELQEAANGLL-SAGPLAS-EVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214 F E++E +L SA P AS E P R DLRHLD VDSA T + DDA+S+ A G Sbjct: 257 FPQEVEERVEVILHSARPGASGETEPQ--RRDLRHLDCLTVDSALTRDYDDALSFRALDG 314 Query: 215 RLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 + +HIAD + ++ G+ L EA RR+ ++YLP I+MLP+ L+ D SL A Sbjct: 315 NRFEVGIHIADAAEFVLKGDVLDREAERRATSIYLPDARISMLPVPLSEDLCSLKAGEDR 374 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 ALSF F V DG++ +++ S IR +LTYE Sbjct: 375 P----------ALSFLFVVHGDGTIAGSEIVSSTIRVAEQLTYE 408 [32][TOP] >UniRef100_A5GTC0 Exoribonuclease R/ribonuclease II n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTC0_SYNR3 Length = 655 Score = 87.0 bits (214), Expect = 7e-16 Identities = 55/134 (41%), Positives = 72/134 (53%), Gaps = 2/134 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLW--VHIADVSAWLKPGEPLTTEALRRS 295 R DL HL +++DSAST EVDDA+ E G LW VHIAD WL+PG+ L EA RR Sbjct: 255 RRDLTHLSCFSIDSASTQEVDDAIGLERRDGDLWIWVHIADPHQWLEPGDRLDLEAQRRG 314 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 TLYL + M P+ +ARD +SL ALS G + DG++ + Sbjct: 315 STLYLSGGAMPMFPMAVARDCMSL----------RPMRRCGALSVGVLLDADGAITAVKP 364 Query: 476 MPSLIRRPWRLTYE 517 S ++ + LTYE Sbjct: 365 CRSWVKVSYGLTYE 378 [33][TOP] >UniRef100_D0CJ15 Exoribonuclease II n=1 Tax=Synechococcus sp. WH 8109 RepID=D0CJ15_9SYNE Length = 676 Score = 86.7 bits (213), Expect = 9e-16 Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 2/161 (1%) Frame = +2 Query: 38 TFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGR 217 +F+ +L E AN L++ E+ R DL HL +Y++D + T E+DDA+S E G Sbjct: 254 SFTSDLVEEANRLVALSN--EELPGDEQRIDLTHLATYSLDDSGTREIDDALSLERRDGV 311 Query: 218 --LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 +W+HIAD S + PL EA RR+ +LYL + MLPLELA LSL A A Sbjct: 312 DWIWIHIADPSRLIDIDSPLDHEARRRATSLYLAEGVMPMLPLELAAGPLSLRAGQRCA- 370 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ALS + +DG++ + ++ S IR + LTY Sbjct: 371 ---------ALSVAVCLDDDGAVAEQRIARSWIRPRYGLTY 402 [34][TOP] >UniRef100_Q066Y3 Exoribonuclease II n=1 Tax=Synechococcus sp. BL107 RepID=Q066Y3_9SYNE Length = 674 Score = 86.3 bits (212), Expect = 1e-15 Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 3/162 (1%) Frame = +2 Query: 38 TFSPELQEAANGLLSAGPLASEVGPSAC-RTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214 TF+ EL+ A L+S+ A++ P R DL HL +Y +D A T E+DDA+S + G Sbjct: 252 TFAMELEHEAQRLISS---AAQPHPGDDDRLDLCHLATYTLDDAGTREIDDAVSLDVQNG 308 Query: 215 R--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHA 388 +WVHIAD + + PG PL EA RR+ +LYL + MLPL LA LSL A A Sbjct: 309 EVWIWVHIADPARLISPGSPLDQEARRRATSLYLADGVLPMLPLGLAAGPLSLRAGQRTA 368 Query: 389 HVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 A+S + G++ + ++ S ++ + LTY Sbjct: 369 ----------AISVSVRLDSAGAIAERRIARSWVQPRYGLTY 400 [35][TOP] >UniRef100_Q3AJZ2 Probable ribonuclease II n=1 Tax=Synechococcus sp. CC9605 RepID=Q3AJZ2_SYNSC Length = 676 Score = 85.5 bits (210), Expect = 2e-15 Identities = 61/160 (38%), Positives = 83/160 (51%), Gaps = 2/160 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGR- 217 F +L E AN L++ E+ R DL HL +Y++D A T E+DDA+S E G Sbjct: 255 FPSDLMEEANRLVALSE--EELPADEQRIDLTHLATYSLDDAGTREIDDALSLERRDGVN 312 Query: 218 -LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHV 394 +W+HIAD S + PL EA RR+ +LYL + MLPLELA LSL A A Sbjct: 313 WIWIHIADPSRLIDIDSPLDQEARRRATSLYLAEGVMPMLPLELAAGPLSLRAGQRCA-- 370 Query: 395 SEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ALS + DG++ + ++ S IR + LTY Sbjct: 371 --------ALSAAVHLDADGAVVEQRIARSWIRPRYGLTY 402 [36][TOP] >UniRef100_B0C2J2 Exoribonuclease II n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C2J2_ACAM1 Length = 680 Score = 85.5 bits (210), Expect = 2e-15 Identities = 59/164 (35%), Positives = 80/164 (48%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205 P FS + A + LL P A R DL L Y +D ST E+DD +S E Sbjct: 246 PVQFSSSVLAAVDQLLKMPPPDLH----AERHDLTSLKVYTIDDESTSEIDDGLSLEFLP 301 Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 R+WVHIAD S W+ G+ L EA RR T+YLPT I M P EL+ +SL Sbjct: 302 DGKQRVWVHIADPSRWITLGDELDQEAQRRGTTVYLPTGMIPMFPTELSTGPMSL----- 356 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + ALSFG + +G++ ++ S ++ +RLTY Sbjct: 357 -----VQGQICCALSFGVILTAEGAIESYEIRCSQVQPTYRLTY 395 [37][TOP] >UniRef100_A3Z2B9 Probable ribonuclease II n=1 Tax=Synechococcus sp. WH 5701 RepID=A3Z2B9_9SYNE Length = 674 Score = 83.6 bits (205), Expect = 7e-15 Identities = 62/161 (38%), Positives = 78/161 (48%), Gaps = 3/161 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG-- 214 F+P L E A LL+ L E R DL L SY +D A T E+DDA++ E G Sbjct: 253 FAPALLEDAEQLLAQAEL--EQPGDGSRRDLTALRSYTLDDADTEEIDDAVALELLDGGG 310 Query: 215 -RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 RLWVHIAD + G PL EA RR +LYL + M PL LA SL Sbjct: 311 LRLWVHIADPGRLVASGSPLDLEARRRGSSLYLAAGVVPMFPLPLAVGPFSL-------- 362 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + A S +AEDGS+ +++ S I +RLTY Sbjct: 363 --RQGQRCAAWSCAVELAEDGSVARHELVRSWICPTYRLTY 401 [38][TOP] >UniRef100_Q3AVJ3 Exoribonuclease II n=1 Tax=Synechococcus sp. CC9902 RepID=Q3AVJ3_SYNS9 Length = 674 Score = 83.2 bits (204), Expect = 1e-14 Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 2/167 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 S + F+ EL++ A L+ + A R DL HL +Y +D A T E+DD +S Sbjct: 246 SSVWSKKFAIELEDEAQQLILSA--AHPQPGDDDRLDLCHLATYTLDDAGTREIDDGISL 303 Query: 200 EADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373 + G +WVHIAD + + PG PL EA RR+ +LYL + MLPL LA LSL A Sbjct: 304 DDQNGEVWIWVHIADPARLIPPGSPLDQEARRRATSLYLADGVLPMLPLSLAAGPLSLRA 363 Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 A A+S + G++ D ++ S +R + LTY Sbjct: 364 GERTA----------AVSVAVRLDSAGAIADRRIARSWVRPRYGLTY 400 [39][TOP] >UniRef100_Q6NQJ6 At5g02250 n=1 Tax=Arabidopsis thaliana RepID=Q6NQJ6_ARATH Length = 803 Score = 83.2 bits (204), Expect = 1e-14 Identities = 60/165 (36%), Positives = 86/165 (52%), Gaps = 3/165 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS-WEAD 208 P S + EAA LLS +S++ + R DL HL YA+D E+DDA+S Sbjct: 373 PTHHSEAITEAAEALLSE---SSDID-AVRRIDLTHLKVYAIDVDEADELDDALSATRLQ 428 Query: 209 TGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 GR+ W+H+AD + ++ PG + EA RR +++LPT T M P +LA +G+SL Sbjct: 429 DGRIKIWIHVADPARYVTPGSKVDREARRRGTSVFLPTATYPMFPEKLAMEGMSL----- 483 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 E NAV S + DG + + V S+IR + LTYE Sbjct: 484 --RQGENCNAV---SVSVVLRSDGCITEYSVDNSIIRPTYMLTYE 523 [40][TOP] >UniRef100_B2GAM4 Ribonuclease R n=1 Tax=Lactobacillus fermentum IFO 3956 RepID=B2GAM4_LACF3 Length = 797 Score = 80.5 bits (197), Expect = 6e-14 Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196 +H P F E+ + AN + PL + A R DL +DS + ++DDA+ + Sbjct: 223 AHDVPHEFPKEVLDQANQI----PLTVQPEEKAGRPDLTDQPLVTIDSIESKDLDDAVVA 278 Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 W+ D G L VHIADVS +++PG PL EA +R ++YL I MLP L Sbjct: 279 WKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKRGTSVYLTDRVIPMLPRRL-------- 330 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SNG ++ E LA+S + G++ ++ PS+IR R+TY+ Sbjct: 331 -SNGICSLNPGEER-LAMSCEMEIDPQGNIVSHEIFPSVIRSHARMTYK 377 [41][TOP] >UniRef100_B0TW06 Ribonuclease II family protein n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25017 RepID=B0TW06_FRAP2 Length = 624 Score = 80.5 bits (197), Expect = 6e-14 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 1/138 (0%) Frame = +2 Query: 107 GPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEAL 286 G + R DL HL +YA+D + + DDA+SW+A ++WVHIAD S+ + G+ + EA Sbjct: 233 GSDSQRVDLTHLTAYAIDDEGSNDPDDAISWDAQQNKMWVHIADPSSSISFGDEVDLEAR 292 Query: 287 RRSCTLYLPTETITMLPLELARD-GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLG 463 R LY+P ITMLP + + GL L + ALS GF + E G + Sbjct: 293 ARGSNLYVPEHIITMLPPQATQKLGLGL------------QEVSPALSVGFRLDESGDIH 340 Query: 464 DPQVMPSLIRRPWRLTYE 517 D ++ S I + R +YE Sbjct: 341 DIEICFSNI-KVTRYSYE 357 [42][TOP] >UniRef100_D0DTZ4 Ribonuclease R n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DTZ4_LACFE Length = 797 Score = 80.5 bits (197), Expect = 6e-14 Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196 +H P F E+ + AN + PL + A R DL +DS + ++DDA+ + Sbjct: 223 AHDVPHEFPKEVLDQANQI----PLTVQPEEKAGRLDLTDQPLVTIDSIESKDLDDAVVA 278 Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 W+ D G L VHIADVS +++PG PL EA +R ++YL I MLP L Sbjct: 279 WKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKRGTSVYLTDRVIPMLPRRL-------- 330 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SNG ++ E LA+S + G++ ++ PS+IR R+TY+ Sbjct: 331 -SNGICSLNPGEER-LAMSCEMEIDPQGNIVSHEIFPSVIRSHARMTYK 377 [43][TOP] >UniRef100_C6YTB9 Ribonuclease II n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25015 RepID=C6YTB9_9GAMM Length = 624 Score = 80.5 bits (197), Expect = 6e-14 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 1/138 (0%) Frame = +2 Query: 107 GPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEAL 286 G + R DL HL +YA+D + + DDA+SW+A ++WVHIAD S+ + G+ + EA Sbjct: 233 GSDSQRVDLTHLTAYAIDDEGSNDPDDAISWDAQQNKMWVHIADPSSSISFGDEVDLEAR 292 Query: 287 RRSCTLYLPTETITMLPLELARD-GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLG 463 R LY+P ITMLP + + GL L + ALS GF + E G + Sbjct: 293 ARGSNLYVPEHIITMLPPQATQKLGLGL------------QEVSPALSVGFRLDESGDIH 340 Query: 464 DPQVMPSLIRRPWRLTYE 517 D ++ S I + R +YE Sbjct: 341 DIEICFSNI-KVTRYSYE 357 [44][TOP] >UniRef100_C0WWN2 Exoribonuclease R n=1 Tax=Lactobacillus fermentum ATCC 14931 RepID=C0WWN2_LACFE Length = 797 Score = 80.5 bits (197), Expect = 6e-14 Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196 +H P F E+ + AN + PL + A R DL +DS + ++DDA+ + Sbjct: 223 AHDVPHEFPKEVLDQANQI----PLTVQPEEKAGRPDLTDQPLVTIDSIESKDLDDAVVA 278 Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 W+ D G L VHIADVS +++PG PL EA +R ++YL I MLP L Sbjct: 279 WKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKRGTSVYLTDRVIPMLPRRL-------- 330 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SNG ++ E LA+S + G++ ++ PS+IR R+TY+ Sbjct: 331 -SNGICSLNPGEER-LAMSCEMEIDPQGNIVSHEIFPSVIRSHARMTYK 377 [45][TOP] >UniRef100_Q72IG1 Putative ribonuclease n=1 Tax=Thermus thermophilus HB27 RepID=Q72IG1_THET2 Length = 599 Score = 80.1 bits (196), Expect = 8e-14 Identities = 57/137 (41%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Frame = +2 Query: 110 PSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEA 283 P R DL HL ++A+D + + DDA+ E G RL+VH+ADV+A + P PL EA Sbjct: 220 PEEDRVDLTHLPAFAIDDEGSQDPDDAVFAEKVEGGFRLFVHVADVAALVPPKSPLDEEA 279 Query: 284 LRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLG 463 LRR LYLP T+ MLP + L L G VS AL+F V+E+G L Sbjct: 280 LRRGANLYLPEGTVPMLP-PAVTEALGL----GLREVSP------ALTFELWVSEEGELL 328 Query: 464 DPQVMPSLIRRPWRLTY 514 + +V PS + R RLTY Sbjct: 329 EERVYPSWV-RVTRLTY 344 [46][TOP] >UniRef100_Q5SI46 Ribonuclease II family protein n=1 Tax=Thermus thermophilus HB8 RepID=Q5SI46_THET8 Length = 598 Score = 80.1 bits (196), Expect = 8e-14 Identities = 57/137 (41%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Frame = +2 Query: 110 PSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEA 283 P R DL HL ++A+D + + DDA+ E G RL+VH+ADV+A + P PL EA Sbjct: 219 PEEDRVDLTHLPAFAIDDEGSQDPDDAVFAEKVEGGFRLFVHVADVAALVPPKSPLDEEA 278 Query: 284 LRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLG 463 LRR LYLP T+ MLP + L L G VS AL+F V+E+G L Sbjct: 279 LRRGANLYLPEGTVPMLP-PAVTEALGL----GLREVSP------ALTFELWVSEEGELL 327 Query: 464 DPQVMPSLIRRPWRLTY 514 + +V PS + R RLTY Sbjct: 328 EERVYPSWV-RVTRLTY 343 [47][TOP] >UniRef100_C9RAV4 Ribonuclease R n=1 Tax=Ammonifex degensii KC4 RepID=C9RAV4_9THEO Length = 715 Score = 79.3 bits (194), Expect = 1e-13 Identities = 60/164 (36%), Positives = 81/164 (49%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205 P F PE++E A + PL A R DLR +D ++DDA+S E Sbjct: 218 PDGFPPEVEEEAENI----PLTIRPEELAGRRDLREWLIVTIDGEDAKDLDDAVSLELLH 273 Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 T RL VHIADVS +++ G L EA +R ++YLP I MLP L SNG Sbjct: 274 DGTYRLGVHIADVSYYVREGSALDREAFQRGTSIYLPDRVIPMLPPRL---------SNG 324 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ++ EE+ L LS V G + + ++ PS+IR RLTY Sbjct: 325 ICSLNPEEDR-LTLSVLMRVDSKGEVLEYELFPSVIRSKARLTY 367 [48][TOP] >UniRef100_A7PNN2 Chromosome chr8 scaffold_23, whole genome shotgun sequence n=2 Tax=Vitis vinifera RepID=A7PNN2_VITVI Length = 702 Score = 79.0 bits (193), Expect = 2e-13 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS-WEADTGR 217 + E+ AA LLS EV R DL HL YA+D E+DDA+S GR Sbjct: 276 YPDEVISAAENLLSEPFDPDEVD----RKDLTHLKVYAIDVDEADELDDALSATRLLDGR 331 Query: 218 L--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 + W+H+AD ++ ++PG + EA++R +++LPT T M P +LA +G+SL Sbjct: 332 IKVWIHVADPTSLIQPGSIVDREAMKRGTSIFLPTATYPMFPEKLAMEGMSL-------- 383 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 ++ A++ + DGS+ + V S+I+ + LTYE Sbjct: 384 --KQGELCNAVTVSVVLHSDGSIAECTVDNSIIKPTYMLTYE 423 [49][TOP] >UniRef100_B9HBM5 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HBM5_POPTR Length = 792 Score = 79.0 bits (193), Expect = 2e-13 Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMS-WEADTGRL--WVHIADVSAWLKPGEPLTTEALRR 292 R DL HL YA+D E+DDA+S GR+ W+H+AD + +++PG + EA+RR Sbjct: 388 RKDLTHLKVYAIDVDEADELDDALSATRLQDGRIKVWIHVADPARYVQPGSKVDREAMRR 447 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 +++LPT T M P +LA +G+SL ++ A++ + DG + + Sbjct: 448 GTSVFLPTATYPMFPEKLAMEGMSL----------KQGEVCNAVTVSVILHSDGCIAEYS 497 Query: 473 VMPSLIRRPWRLTYE 517 V S+I+ + LTYE Sbjct: 498 VDNSIIKPTYMLTYE 512 [50][TOP] >UniRef100_C1XVL5 Exoribonuclease R n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XVL5_9DEIN Length = 602 Score = 78.6 bits (192), Expect = 2e-13 Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 2/130 (1%) Frame = +2 Query: 110 PSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEA 283 P RTDL HL++YA+D + + DDA+ E G RL VH+ADV+A ++PG L EA Sbjct: 220 PEEERTDLTHLEAYAIDDEGSQDPDDAVWAERTEGGFRLLVHVADVAALVEPGSLLDQEA 279 Query: 284 LRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLG 463 + R LYLP T+ MLP A + L L G +S AL+F V+E+G L Sbjct: 280 MHRGANLYLPEGTVPMLP-PRATEVLGL----GLQEISP------ALTFALFVSEEGELL 328 Query: 464 DPQVMPSLIR 493 + ++ PS +R Sbjct: 329 EERLFPSWVR 338 [51][TOP] >UniRef100_C7JES0 Ribonuclease R n=8 Tax=Acetobacter pasteurianus RepID=C7JES0_ACEP3 Length = 676 Score = 78.2 bits (191), Expect = 3e-13 Identities = 57/166 (34%), Positives = 78/166 (46%), Gaps = 3/166 (1%) Frame = +2 Query: 29 YPPTFSPELQEAANGLLSAGPLASEVGPSAC-RTDLRHLDSYAVDSASTFEVDDAMSWE- 202 +PPT E EA ++ A + P+ RTDLRHL +D AS + DDA+ E Sbjct: 228 HPPTAFSEQAEAEARQIAQQNAALQGAPAPSGRTDLRHLPLITIDDASAHDFDDALWAEQ 287 Query: 203 -ADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379 AD L V IADV+ W+KPG L EA R ++YLP + + MLPL L+ SL Sbjct: 288 TADGFHLIVAIADVAHWVKPGSALDEEARERGNSIYLPDKVVPMLPLALSAQACSLLPGQ 347 Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 L L + G + Q+ +++ RLTYE Sbjct: 348 DR----------LCLFADMHITPQGHVVSAQINRGIMQSAARLTYE 383 [52][TOP] >UniRef100_C7XW39 Ribonuclease R n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XW39_9LACO Length = 799 Score = 77.0 bits (188), Expect = 7e-13 Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196 +H P F E E AN + PL R D+ +DS + ++DDA+ + Sbjct: 239 AHDVPHEFPKEAMEQANKI----PLKVLPEEKQGRKDITKQPLVTIDSIESKDLDDAVVA 294 Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 W+ D G L VHIADVS +++PG PL EA +R ++YL I MLP L Sbjct: 295 WKMDNGHYHLGVHIADVSHYVQPGTPLDEEAFKRGTSVYLTDRVIPMLPRRL-------- 346 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SNG ++ E LA+S + E G++ + PS+I+ R+TY+ Sbjct: 347 -SNGICSLNPNEER-LAMSCEMEIDEQGNILKHDIFPSVIKSHARMTYK 393 [53][TOP] >UniRef100_A6NVY9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVY9_9BACE Length = 710 Score = 77.0 bits (188), Expect = 7e-13 Identities = 57/164 (34%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Frame = +2 Query: 35 PTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214 P F P + +AA + P E RTDLR+ +D AS+ ++DDA+S E D Sbjct: 164 PEFPPAVLDAA----ARAPREVEKDALTGRTDLRNRIIITIDGASSKDLDDAVSLERDEQ 219 Query: 215 RLWV---HIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 WV HIADVS +++ PL EA R ++Y I MLP+EL+ SL+ Sbjct: 220 GRWVLGVHIADVSHYVQEKSPLDLEAWERGTSVYFADRVIPMLPVELSNGICSLNPGVDR 279 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 L +S T+A DG D + S+IR R+TYE Sbjct: 280 ----------LTISCFMTLAADGREEDHTICKSVIRSTERMTYE 313 [54][TOP] >UniRef100_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLT1_MOOTA Length = 770 Score = 76.3 bits (186), Expect = 1e-12 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 3/162 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA---DT 211 F PE+ A + P E G A R DLR +D A ++DDA+S E + Sbjct: 218 FPPEVIREAEEI----PRDLEPGELAKRRDLRDWRLVTIDGADARDLDDAVSLERRPDGS 273 Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 L VHIADVS +++ G PL EA R ++Y I MLP L+ D SL+A Sbjct: 274 YLLGVHIADVSFYVREGRPLDREAFNRGTSVYFVDRVIPMLPARLSNDICSLNA------ 327 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 E+ A+ AL T++ G++ D ++ PS+IR R+TY+ Sbjct: 328 -GEDRLAITAL---MTISPAGTVKDYELFPSVIRVRERMTYD 365 [55][TOP] >UniRef100_C1ZVI5 Exoribonuclease R n=1 Tax=Rhodothermus marinus DSM 4252 RepID=C1ZVI5_RHOMR Length = 659 Score = 76.3 bits (186), Expect = 1e-12 Identities = 59/164 (35%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Frame = +2 Query: 35 PTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE--AD 208 PTF E+ AA L+ P RTD HL ++ +D AST E+DDA + E A+ Sbjct: 241 PTFPSEVLAAAEALVPFEPTGD-------RTDFTHLPAFHIDDASTREIDDAFTVEPLAE 293 Query: 209 TG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 G R+ +H+ADV ++ P + L EA RR T YLPT +I MLP L+ D SL Sbjct: 294 GGWRIGIHLADVPHFVAPDDVLDREARRRGLTRYLPTGSIPMLPERLSHDLASL------ 347 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 + LS TV + D Q++ IR TYE Sbjct: 348 ----RPDAIRPTLSVVVTVDASEQIRDVQLVRGQIRVAHGFTYE 387 [56][TOP] >UniRef100_Q1J2E9 Ribonuclease II, VacB-like protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J2E9_DEIGD Length = 469 Score = 75.9 bits (185), Expect = 2e-12 Identities = 63/180 (35%), Positives = 82/180 (45%), Gaps = 24/180 (13%) Frame = +2 Query: 47 PELQEAANGLL--------SAGPLASEVG-------------PSACRTDLRHLDSYAVDS 163 PE EAA+ LL + P A +G P R DL L +YA+D Sbjct: 39 PETPEAAHALLLRLGLWDEARTPYAERLGAALTPVTLAVPDFPEEARLDLTQLPAYAIDD 98 Query: 164 ASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITML 334 + DDA+ E G RLWVH+ADV+A + G PL EA R TLYLP TI ML Sbjct: 99 EGNRDPDDAVGIEVLGGGLTRLWVHVADVAALVPAGSPLDEEARARGATLYLPDRTIGML 158 Query: 335 PLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 P D L A G + ++ ALS + E+G+ +V + + R RLTY Sbjct: 159 P-----DALVERAGLGLSEITP------ALSIALDLDEEGNADAVEVQLTRV-RVQRLTY 206 [57][TOP] >UniRef100_A0Q479 Ribonuclease II family protein n=2 Tax=Francisella novicida RepID=A0Q479_FRATN Length = 618 Score = 75.9 bits (185), Expect = 2e-12 Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHIADPSSSISFGDEIDLQARARGSN 291 Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478 LY+P + + MLP + A+ GL L + A+S GF + E G + D ++ Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339 Query: 479 PSLIRRPWRLTYE 517 S I + R +YE Sbjct: 340 FSNI-KVTRYSYE 351 [58][TOP] >UniRef100_B2SE32 Ribonuclease II family protein n=1 Tax=Francisella tularensis subsp. mediasiatica FSC147 RepID=B2SE32_FRATM Length = 618 Score = 75.5 bits (184), Expect = 2e-12 Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHIADPSSSISFGDEVDLQARARGSN 291 Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478 LY+P + + MLP + A+ GL L + A+S GF + E G + D ++ Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339 Query: 479 PSLIRRPWRLTYE 517 S I + R +YE Sbjct: 340 FSNI-KVTRYSYE 351 [59][TOP] >UniRef100_A4IZY2 Ribonuclease II family protein n=1 Tax=Francisella tularensis subsp. tularensis WY96-3418 RepID=A4IZY2_FRATW Length = 618 Score = 75.5 bits (184), Expect = 2e-12 Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHIADPSSSISFGDEVDLQARARGSN 291 Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478 LY+P + + MLP + A+ GL L + A+S GF + E G + D ++ Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339 Query: 479 PSLIRRPWRLTYE 517 S I + R +YE Sbjct: 340 FSNI-KVTRYSYE 351 [60][TOP] >UniRef100_C5S9Y8 Ribonuclease II n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9Y8_CHRVI Length = 608 Score = 75.5 bits (184), Expect = 2e-12 Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 1/133 (0%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 R DL HL +YA+D + DDA+S + D RLWVH+ADV A ++P L EA R Sbjct: 232 RLDLTHLPAYAIDDEGNQDPDDALSLDGD--RLWVHVADVGALVRPDSELEREARARGSN 289 Query: 302 LYLPTETITMLPLELARD-GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478 LYLP + MLP + GL L + ALSF DG L D +V Sbjct: 290 LYLPEGVVNMLPWRVTEHLGLGL------------QEVSPALSFALRCDADGELRDIEVH 337 Query: 479 PSLIRRPWRLTYE 517 + + R RL+YE Sbjct: 338 RTWV-RVTRLSYE 349 [61][TOP] >UniRef100_A4BLZ8 Ribonuclease R n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLZ8_9GAMM Length = 773 Score = 75.5 bits (184), Expect = 2e-12 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 2/169 (1%) Frame = +2 Query: 17 ASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS 196 ++H P + E++ A G P +++ G R DLRHL +D AS + DDA+ Sbjct: 237 SAHGIPVDWPAEVEAALAGYTDRVPESAKQG----RVDLRHLPLVTIDGASARDFDDAVY 292 Query: 197 WEADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E T RL+V IADVS +++PG PL EA++R ++Y P + MLP L Sbjct: 293 AEPMTNGWRLYVAIADVSHYVRPGTPLEREAVKRGNSVYFPRSVVPMLPAIL-------- 344 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SNG ++ + L + ++++G+L + +++R RLTYE Sbjct: 345 -SNGLCSLNPRVDR-LCVVCEMQISQEGALRRSRFYEAVMRSRARLTYE 391 [62][TOP] >UniRef100_Q14JI5 Ribonuclease II family protein n=3 Tax=Francisella tularensis subsp. tularensis RepID=Q14JI5_FRAT1 Length = 618 Score = 75.1 bits (183), Expect = 3e-12 Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSKKNKMWVHIADPSSSISFGDEVDLQARARGSN 291 Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478 LY+P + + MLP + A+ GL L + A+S GF + E G + D ++ Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339 Query: 479 PSLIRRPWRLTYE 517 S I + R +YE Sbjct: 340 FSNI-KVTRYSYE 351 [63][TOP] >UniRef100_Q9RYD0 Ribonuclease II family protein n=1 Tax=Deinococcus radiodurans RepID=Q9RYD0_DEIRA Length = 461 Score = 74.7 bits (182), Expect = 3e-12 Identities = 48/113 (42%), Positives = 63/113 (55%), Gaps = 4/113 (3%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG-- 214 ++ L+ A N + P + P+ R DL HL ++A+D + DDA+ E G Sbjct: 57 YADRLRAALNAVELPVP---DFDPAEERLDLTHLPTFAIDDEGNQDPDDAVGVEDLGGGL 113 Query: 215 -RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLEL-ARDGLSL 367 RLWVH+ADV+A + P PL EA R TLYLP TI MLP EL A+ GL L Sbjct: 114 TRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDELVAKAGLGL 166 [64][TOP] >UniRef100_UPI000185547B ribonuclease II family protein n=1 Tax=Francisella novicida FTG RepID=UPI000185547B Length = 618 Score = 74.3 bits (181), Expect = 4e-12 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHIADPSSSISFGDEIDLQARARGSN 291 Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478 LY+P + + MLP + A+ GL L + A+S GF + + G + D ++ Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDKQGDIHDIEIC 339 Query: 479 PSLIRRPWRLTYE 517 S I + R +YE Sbjct: 340 FSNI-KVTRYSYE 351 [65][TOP] >UniRef100_Q7U6W2 Probable ribonuclease II n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U6W2_SYNPX Length = 682 Score = 74.3 bits (181), Expect = 4e-12 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR--LWVHIADVSAWLKPGEPLTTEALRRS 295 R DL Y +D +ST E+DD ++ E G +W+HIAD + ++P PL EA RR+ Sbjct: 286 RVDLTAQRVYTLDDSSTKEIDDGLALEPGDGGPWIWIHIADPARLIEPDSPLDREARRRA 345 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 +LYL + MLPL+LA + SL A ALS G + ++G++ Sbjct: 346 TSLYLANGVLPMLPLKLATEIFSLRAG----------QRCPALSVGVLLDDEGAVVASSC 395 Query: 476 MPSLIRRPWRLTYE 517 S ++ +RLTYE Sbjct: 396 QRSWVQPRYRLTYE 409 [66][TOP] >UniRef100_Q1WSY6 Ribonuclease R 1 n=1 Tax=Lactobacillus salivarius UCC118 RepID=Q1WSY6_LACS1 Length = 799 Score = 74.3 bits (181), Expect = 4e-12 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 3/174 (1%) Frame = +2 Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184 LE+ H P F E+ E + + +VG R DL D +DS + ++D Sbjct: 227 LEIVYQHNIPTEFPEEVLEQISKIPDYVTEEEKVG----RVDLTDQDLVTIDSIESKDLD 282 Query: 185 DAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355 DA++ W+ G L VHIADVS ++KP PL EA R ++YL I MLP +L+ Sbjct: 283 DAVNVWKLPNGNYHLGVHIADVSHYVKPKTPLDKEAFERGTSVYLTDRVIPMLPPKLSNG 342 Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SL + HV LA++ + DG + + ++ PS+I+ R+TY+ Sbjct: 343 ICSL-----NPHVER-----LAMTCEMEINADGEVVNHKIFPSVIKSTERMTYK 386 [67][TOP] >UniRef100_C1D045 Putative ribonuclease n=1 Tax=Deinococcus deserti VCD115 RepID=C1D045_DEIDV Length = 462 Score = 74.3 bits (181), Expect = 4e-12 Identities = 53/135 (39%), Positives = 68/135 (50%), Gaps = 4/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRR 292 R DL HL++YA+D + DDA+ E G RLWVH+ADV+A + P L EA R Sbjct: 82 RLDLTHLEAYAIDDEGNRDPDDAVGIEMLDGGLTRLWVHVADVAALVPPDSALDLEARSR 141 Query: 293 SCTLYLPTETITMLPLELA-RDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDP 469 TLYLP +TI MLP EL + GL L + ALS + DG+ Sbjct: 142 GATLYLPDQTIGMLPDELVEKTGLGLHPTTP------------ALSIALDLDHDGNADAV 189 Query: 470 QVMPSLIRRPWRLTY 514 V + +R RLTY Sbjct: 190 DVHLTTVRVE-RLTY 203 [68][TOP] >UniRef100_C2EG81 Ribonuclease R1 n=1 Tax=Lactobacillus salivarius ATCC 11741 RepID=C2EG81_9LACO Length = 799 Score = 74.3 bits (181), Expect = 4e-12 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 3/174 (1%) Frame = +2 Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184 LE+ H P F E+ E + + +VG R DL D +DS + ++D Sbjct: 227 LEIVYQHNIPTEFPEEVLEQISKIPDYVTEEEKVG----RVDLTDQDLVTIDSIESKDLD 282 Query: 185 DAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355 DA++ W+ G L VHIADVS ++KP PL EA R ++YL I MLP +L+ Sbjct: 283 DAVNVWKLPNGNYHLGVHIADVSHYVKPKTPLDKEAFERGTSVYLTDRVIPMLPPKLSNG 342 Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SL + HV LA++ + DG + + ++ PS+I+ R+TY+ Sbjct: 343 ICSL-----NPHVER-----LAMTCEMEINADGEVVNHKIFPSVIKSTERMTYK 386 [69][TOP] >UniRef100_A7YRE1 Putative uncharacterized protein n=1 Tax=Francisella tularensis subsp. holarctica FSC022 RepID=A7YRE1_FRATU Length = 618 Score = 74.3 bits (181), Expect = 4e-12 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 R DL HL +YA+D + + DDA+SW++ ++WVHI+D S+ + G+ + +A R Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHISDPSSSISFGDEVDLQARARGSN 291 Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478 LY+P + + MLP + A+ GL L + A+S GF + E G + D ++ Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339 Query: 479 PSLIRRPWRLTYE 517 S I + R +YE Sbjct: 340 FSNI-KVTRYSYE 351 [70][TOP] >UniRef100_A7JFK7 Ribonuclease II family protein n=1 Tax=Francisella novicida GA99-3549 RepID=A7JFK7_FRANO Length = 618 Score = 74.3 bits (181), Expect = 4e-12 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 R DL HL +YA+D + + DDA+SW++ ++WVHIAD S+ + G+ + +A R Sbjct: 232 RVDLTHLKAYAIDDEGSKDPDDAISWDSQKNKMWVHIADPSSSISFGDEIDLQARARGSN 291 Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478 LY+P + + MLP + A+ GL L + A+S GF + + G + D ++ Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDKQGDIHDIEIC 339 Query: 479 PSLIRRPWRLTYE 517 S I + R +YE Sbjct: 340 FSNI-KVTRYSYE 351 [71][TOP] >UniRef100_A7N9H4 Ribonuclease II (RNB-like) family protein n=4 Tax=Francisella tularensis subsp. holarctica RepID=A7N9H4_FRATF Length = 616 Score = 74.3 bits (181), Expect = 4e-12 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 R DL HL +YA+D + + DDA+SW++ ++WVHI+D S+ + G+ + +A R Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAISWDSQKNKMWVHISDPSSSISFGDEVDLQARARGSN 291 Query: 302 LYLPTETITMLPLE-LARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVM 478 LY+P + + MLP + A+ GL L + A+S GF + E G + D ++ Sbjct: 292 LYVPEQIVMMLPPQATAKLGLGL------------QEVSPAVSVGFRIDEQGDIHDIEIC 339 Query: 479 PSLIRRPWRLTYE 517 S I + R +YE Sbjct: 340 FSNI-KVTRYSYE 351 [72][TOP] >UniRef100_B9T6X7 Ribonuclease II, putative n=1 Tax=Ricinus communis RepID=B9T6X7_RICCO Length = 731 Score = 74.3 bits (181), Expect = 4e-12 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 3/124 (2%) Frame = +2 Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184 L +R H S E+ AA LL L S R DL HL YA+D E+D Sbjct: 359 LNIRTDH------SDEILSAAENLL----LESVDPDKIHRKDLTHLKVYAIDVDEADELD 408 Query: 185 DAMS-WEADTGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355 DA+S + GR+ W+H+AD +++PG + EA++R +++LPT T M P +LA D Sbjct: 409 DALSATKLQDGRIKIWIHVADPGRYVQPGSKIDREAMKRGTSVFLPTATYPMFPEKLAMD 468 Query: 356 GLSL 367 G+SL Sbjct: 469 GMSL 472 [73][TOP] >UniRef100_A5CVS5 Ribonuclease II family protein n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=A5CVS5_VESOH Length = 601 Score = 73.9 bits (180), Expect = 6e-12 Identities = 50/157 (31%), Positives = 81/157 (51%) Frame = +2 Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202 +++ P F+P N +L + + + R DL HL SYA+D+ + + DDA+S + Sbjct: 190 NYFKPGFNP--YPTRNNILKDDQIDASI-VKVDRVDLTHLSSYAIDNFDSNDADDAISVD 246 Query: 203 ADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 D ++W+HIADVS G L + A +R+ LYLP + I MLP+ + + Sbjct: 247 GD--KIWIHIADVSLIATAGSELDSYAQKRASNLYLPEQIIHMLPISVTKMCALGLTETS 304 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIR 493 H ALS GFT+ E G + + +V+ S+I+ Sbjct: 305 H-----------ALSIGFTL-ELGEINNVEVVRSIIK 329 [74][TOP] >UniRef100_C8R2V9 Exoribonuclease II n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2V9_9DELT Length = 682 Score = 73.6 bits (179), Expect = 8e-12 Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWE--ADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295 R DLRHL +D ST ++DDA+ E + + +HIADV+ ++KPG L A+ R Sbjct: 293 RVDLRHLPVLTIDGKSTRDLDDALHLERQGENFVVGIHIADVAHYVKPGSLLFKTAVERV 352 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 +LY P + MLP L+ D SL A A+SF T+ DG + ++ Sbjct: 353 TSLYFPEGQVPMLPPRLSEDLCSLVAGRDRP----------AMSFLVTLTPDGDIVSSRI 402 Query: 476 MPSLIRRPWRLTYE 517 + S+IR RL YE Sbjct: 403 VASVIRVARRLDYE 416 [75][TOP] >UniRef100_C2F2N3 Exoribonuclease R n=2 Tax=Lactobacillus reuteri RepID=C2F2N3_LACRE Length = 801 Score = 73.6 bits (179), Expect = 8e-12 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196 +H P F E+ E AN + PL R D+ +D+ + ++DDA+ + Sbjct: 226 AHDVPHEFPKEVMEQANKI----PLHVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVA 281 Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 W+ D G L VHIADV+ ++KPG PL EA +R ++YL + MLP L Sbjct: 282 WKMDNGHYHLGVHIADVTHYVKPGTPLDQEAFKRGTSVYLTDRVVPMLPKRL-------- 333 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SNG ++ E LA+S + E G + + ++ S+++ R+TY+ Sbjct: 334 -SNGICSLNPNEER-LAMSCEMEIDEQGKIVNHRIFQSVMKSHARMTYK 380 [76][TOP] >UniRef100_A5VII9 Ribonuclease R n=4 Tax=Lactobacillus reuteri RepID=A5VII9_LACRD Length = 801 Score = 73.6 bits (179), Expect = 8e-12 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196 +H P F E+ E AN + PL R D+ +D+ + ++DDA+ + Sbjct: 226 AHDVPHEFPKEVMEQANKI----PLHVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVA 281 Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 W+ D G L VHIADV+ ++KPG PL EA +R ++YL + MLP L Sbjct: 282 WKMDNGHYHLGVHIADVTHYVKPGTPLDQEAFKRGTSVYLTDRVVPMLPKRL-------- 333 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SNG ++ E LA+S + E G + + ++ S+++ R+TY+ Sbjct: 334 -SNGICSLNPNEER-LAMSCEMEIDEQGKIVNHRIFQSVMKSHARMTYK 380 [77][TOP] >UniRef100_B3XQY8 Ribonuclease R n=1 Tax=Lactobacillus reuteri 100-23 RepID=B3XQY8_LACRE Length = 801 Score = 73.6 bits (179), Expect = 8e-12 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196 +H P F E+ E AN + PL R D+ +D+ + ++DDA+ + Sbjct: 226 AHDVPHEFPKEVMEQANKI----PLHVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVA 281 Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 W+ D G L VHIADV+ ++KPG PL EA +R ++YL + MLP L Sbjct: 282 WKMDNGHYHLGVHIADVTHYVKPGTPLDQEAFKRGTSVYLTDRVVPMLPKRL-------- 333 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SNG ++ E LA+S + E G + + ++ S+++ R+TY+ Sbjct: 334 -SNGICSLNPNEER-LAMSCEMEIDEQGKIVNHRIFQSVMKSHARMTYK 380 [78][TOP] >UniRef100_C6DE25 Ribonuclease R n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DE25_PECCP Length = 818 Score = 73.2 bits (178), Expect = 1e-11 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P+++E L P A++ G R DLR L +D + DDA+ Sbjct: 230 THDIPHTWPPKVEEQVKDLAEEVPEAAKKG----RVDLRKLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSAQGKLSSYKFYEAVMSSHARLTY 383 [79][TOP] >UniRef100_A5IXZ7 Ribonuclease R (VacB-like (Shigella flexneri)ribonuclease II) n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXZ7_MYCAP Length = 729 Score = 73.2 bits (178), Expect = 1e-11 Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSW---EADTGRLWVHIADVSAWLKPGEPLTTEALRR 292 RTDLR+ +D +ST + DDA+S + +T L VHIADV+ ++K PL EAL+R Sbjct: 249 RTDLRNDLVVTIDGSSTKDFDDAISVVKIDENTYELGVHIADVAYYVKENTPLDDEALKR 308 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++YL E + MLP +L SNG ++ E L +S + + G + + Sbjct: 309 GTSIYLLNEVVPMLPFKL---------SNGICSLNPNEER-LTISCITKINKLGQSIETK 358 Query: 473 VMPSLIRRPWRLTYE 517 ++PS+I+ +RLTYE Sbjct: 359 IVPSVIKSKYRLTYE 373 [80][TOP] >UniRef100_Q9LZA0 Ribonuclease II-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LZA0_ARATH Length = 782 Score = 73.2 bits (178), Expect = 1e-11 Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 3/115 (2%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS-WEAD 208 P S + EAA LLS +S++ + R DL HL YA+D E+DDA+S Sbjct: 373 PTHHSEAITEAAEALLSE---SSDID-AVRRIDLTHLKVYAIDVDEADELDDALSATRLQ 428 Query: 209 TGRL--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367 GR+ W+H+AD + ++ PG + EA RR +++LPT T M P +LA +G+SL Sbjct: 429 DGRIKIWIHVADPARYVTPGSKVDREARRRGTSVFLPTATYPMFPEKLAMEGMSL 483 [81][TOP] >UniRef100_C1EB65 Ribonuclease n=1 Tax=Micromonas sp. RCC299 RepID=C1EB65_9CHLO Length = 851 Score = 73.2 bits (178), Expect = 1e-11 Identities = 51/133 (38%), Positives = 64/133 (48%), Gaps = 6/133 (4%) Frame = +2 Query: 17 ASHFYPPTFSPELQEAANGLLSAGPLASEVGPSA---CRTDLRHLDSYAVDSASTFEVDD 187 A H P F ++ L A LA+E P A R DL L YA+D T EVDD Sbjct: 382 ARHDVPTAF------LSDALEHAARLAAEAPPDADGEIRKDLTRLRCYAIDGEGTVEVDD 435 Query: 188 AMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDG 358 A+S EA G R+WVH+AD + W+ G PL EA R + Y P + M PL +A Sbjct: 436 AVSAEALPGGKIRVWVHVADATRWVGLGTPLEAEAESRGASGYHPRGVLPMFPLPVAAGL 495 Query: 359 LSLDASNGHAHVS 397 +SL VS Sbjct: 496 MSLTPGEPKCAVS 508 [82][TOP] >UniRef100_Q74D34 Ribonuclease R, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74D34_GEOSL Length = 763 Score = 72.8 bits (177), Expect = 1e-11 Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Frame = +2 Query: 107 GPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTT 277 G A R DLR + +D + + DDA+S + + G RLWV IADVS ++KPG L Sbjct: 238 GDVAKRVDLRERLTVTIDGETARDFDDAVSVQREKGGDIRLWVSIADVSHYVKPGSALDR 297 Query: 278 EALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGS 457 EA R ++Y P I MLP EL+ SL+ + E L FT G+ Sbjct: 298 EAYLRGTSVYFPDRCIPMLPEELSNGICSLN--------PQVERLTLTAEMLFT--RSGA 347 Query: 458 LGDPQVMPSLIRRPWRLTY 514 + PS+IR RLTY Sbjct: 348 IKSSSFYPSVIRSAARLTY 366 [83][TOP] >UniRef100_A6TH95 RNase R n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TH95_KLEP7 Length = 810 Score = 72.8 bits (177), Expect = 1e-11 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + P +++ +GL P ++VG R DLR L +D + DDA+ Sbjct: 230 THEIPYVWPPAVEKQVSGLKEQVPEEAKVG----RVDLRSLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++PG PL EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTPLDAEARSRGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSKGRLTGYKFYEAVMSSHARLTY 383 [84][TOP] >UniRef100_A2C9R3 Probable ribonuclease II n=1 Tax=Prochlorococcus marinus str. MIT 9303 RepID=A2C9R3_PROM3 Length = 683 Score = 72.4 bits (176), Expect = 2e-11 Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 2/162 (1%) Frame = +2 Query: 38 TFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA--DT 211 +F +Q A+ LL+ S + R DL L +Y +D T E+DDA+S ++ Sbjct: 259 SFEGSVQAQADQLLNKFEQLSFASDDS-RLDLSDLRTYTLDDHQTQEIDDAISLQSVDQD 317 Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 +W+HIAD + + PL EA R+ +LYL MLPL +A + LSL A A Sbjct: 318 SWVWIHIADPARLIPVDSPLDLEARARATSLYLADGLRPMLPLSVAAEVLSLRAGRRCA- 376 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 ALS + E G + D +V + IR +RLTYE Sbjct: 377 ---------ALSVAVVLDESGCIADTRVCRTWIRPCYRLTYE 409 [85][TOP] >UniRef100_C8P6W3 Ribonuclease R n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P6W3_9LACO Length = 786 Score = 72.4 bits (176), Expect = 2e-11 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196 +H P F E + AN + PL R D+ + +D+ + ++DDA+ + Sbjct: 227 AHDVPHEFPKEAMDQANQI----PLHVLPEEKKGRKDITNQPLVTIDAIESKDLDDAVVA 282 Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 W+ D G L VHIADVS +++PG PL EA +R ++YL + MLP L Sbjct: 283 WKMDNGHYHLGVHIADVSHYVQPGTPLDKEAFKRGTSVYLTDRVVPMLPKRL-------- 334 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SNG ++ E LA+S + E G + ++ PS+++ R+TY+ Sbjct: 335 -SNGICSLNPGEER-LAMSCEMEIDEQGRVVKHRIFPSVMKSHARMTYK 381 [86][TOP] >UniRef100_C6PDU8 Ribonuclease R n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDU8_CLOTS Length = 719 Score = 72.4 bits (176), Expect = 2e-11 Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA-DTGR--LWVHIADVSAWLKPGEPLTTEALRR 292 RTDLRHL+ +D ++DDA++ E D+G L+V IADVS ++K G L EAL R Sbjct: 244 RTDLRHLNIVTIDGEDAKDLDDAVAVEKLDSGDYILYVSIADVSHYVKEGSELDKEALNR 303 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 C++Y I MLP L SNG ++ E+ L L+ + ++G++ D Sbjct: 304 GCSVYFIDRVIPMLPHRL---------SNGICSLNPSEDR-LTLTVKMKIDKNGNVVDHD 353 Query: 473 VMPSLIRRPWRLTY 514 + S+IR R+TY Sbjct: 354 IFESVIRSKERMTY 367 [87][TOP] >UniRef100_Q9PK00 Ribonuclease R n=1 Tax=Chlamydia muridarum RepID=RNR_CHLMU Length = 692 Score = 72.4 bits (176), Expect = 2e-11 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DSAS + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 204 RKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDQEAAKR 263 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T +++G L D + Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313 Query: 473 VMPSLIRRPWRLTYE 517 ++ S+IR +R+TY+ Sbjct: 314 ILRSVIRSKYRMTYD 328 [88][TOP] >UniRef100_Q39VV4 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39VV4_GEOMG Length = 759 Score = 72.0 bits (175), Expect = 2e-11 Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 3/169 (1%) Frame = +2 Query: 17 ASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS 196 A H P F E+ + A + P A RTDLR + + +D + + DDA++ Sbjct: 212 AKHGLPFEFPAEVLDEARAV----PQAIGEKDLQGRTDLREIVTVTIDGETARDFDDAVA 267 Query: 197 WEADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367 + G RLWV IADVS ++KP PL EA R ++Y P I MLP EL+ SL Sbjct: 268 VRKERGGNIRLWVSIADVSHYVKPDAPLDREAYLRGTSVYFPDRCIPMLPEELSNGICSL 327 Query: 368 DASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + E + FT G++ + PS+I+ RLTY Sbjct: 328 N--------PRVERLTMTAEMLFT--RSGTMKEATFYPSVIKSDARLTY 366 [89][TOP] >UniRef100_B9M5H5 Ribonuclease R n=1 Tax=Geobacter sp. FRC-32 RepID=B9M5H5_GEOSF Length = 758 Score = 72.0 bits (175), Expect = 2e-11 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 3/167 (1%) Frame = +2 Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202 H P F P + +AA + P + RTDLR + +D + + DDA+S + Sbjct: 214 HELPDVFPPSVLKAARAV----PETIQDSELEGRTDLRGQLTVTIDGETAKDFDDAVSVK 269 Query: 203 ADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373 + RLWV IADVS ++KPG PL EA R ++Y P I MLP EL Sbjct: 270 KEGKGAIRLWVSIADVSHYVKPGSPLDKEAYLRGTSVYFPDRCIPMLPEEL--------- 320 Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L ++ G++ + PS+IR RLTY Sbjct: 321 SNGICSLNPQVDR-LTMTAEMLFDGSGTILEAAFYPSVIRSVARLTY 366 [90][TOP] >UniRef100_C2ETG9 Exoribonuclease R n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2ETG9_9LACO Length = 801 Score = 72.0 bits (175), Expect = 2e-11 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-S 196 +H P F E+ + AN + PL R D+ +D+ + ++DDA+ + Sbjct: 226 AHDVPHEFPQEVMDEANKI----PLKVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVA 281 Query: 197 WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 W+ D G L VHIADVS ++KPG L EA +R ++YL + MLP L Sbjct: 282 WKMDNGHYHLGVHIADVSHYVKPGSALDKEAFKRGTSVYLTDRVVPMLPKRL-------- 333 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SNG ++ E L++S + E G + ++ PS++R R+TY+ Sbjct: 334 -SNGICSLNPGEER-LSMSCEMEIDEQGRIIKHRIFPSVMRSHARMTYK 380 [91][TOP] >UniRef100_Q7V7K3 Probable ribonuclease II n=1 Tax=Prochlorococcus marinus str. MIT 9313 RepID=Q7V7K3_PROMM Length = 688 Score = 71.6 bits (174), Expect = 3e-11 Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 2/162 (1%) Frame = +2 Query: 38 TFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA--DT 211 +F +Q A+ LL+ S G R DL L +Y +D T E+DDA+S + Sbjct: 264 SFEGSVQAQADQLLNKFEQLS-FGGDDNRLDLSDLRTYTLDDHQTQEIDDAISLQCVDQD 322 Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 +W+HIAD + + PL EA R+ +LYL TMLPL +A + LSL A A Sbjct: 323 NWIWIHIADPARLIPVDSPLDLEARARATSLYLADGLRTMLPLSVAVEVLSLRAGRRCA- 381 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 ALS + E G + +V + IR +RLTYE Sbjct: 382 ---------ALSVAVVLDESGCIAGTRVCRTWIRPCYRLTYE 414 [92][TOP] >UniRef100_Q6D126 Ribonuclease R n=1 Tax=Pectobacterium atrosepticum RepID=Q6D126_ERWCT Length = 818 Score = 71.6 bits (174), Expect = 3e-11 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P++++ L P A++ G R DLR L +D + DDA+ Sbjct: 230 THDIPHTWPPKVEDQVKDLSEEVPEAAKKG----RVDLRKLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ + MLP L Sbjct: 286 EPKRGGGWRLWVAIADVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSTQGKLSSYKFYEAVMSSHARLTY 383 [93][TOP] >UniRef100_B8CYF3 Ribonuclease R n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYF3_HALOH Length = 706 Score = 71.6 bits (174), Expect = 3e-11 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 3/165 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205 P F E+ E A + PL G R DLR + +D A ++DDA+S E Sbjct: 218 PQEFDYEVLEEAKSI----PLEISKGDLKGRRDLRAMPMVTIDGADAKDLDDAVSIEEVD 273 Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 + RL VHIADVS ++K L EAL+R ++YL I MLP L SNG Sbjct: 274 DNQVRLGVHIADVSHYVKEDSALDREALKRGTSIYLVDRVIPMLPERL---------SNG 324 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 ++ ++ + F E L + +++PS+I+ +RLTY+ Sbjct: 325 ICSLNPNQDRLTMSVFITYQLEPFKLMEYEIVPSVIKTNYRLTYD 369 [94][TOP] >UniRef100_A2C262 Probable ribonuclease II n=1 Tax=Prochlorococcus marinus str. NATL1A RepID=A2C262_PROM1 Length = 424 Score = 71.6 bits (174), Expect = 3e-11 Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 2/131 (1%) Frame = +2 Query: 128 DLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCT 301 DL HL +Y +D + T E+DDA+S E +G +LW+HIA +++++ + +A + T Sbjct: 29 DLSHLKTYTIDDSKTVEIDDAISLEQVSGQNKLWIHIASPASYIEYQSGIDEKARKLVST 88 Query: 302 LYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMP 481 +YL T T MLP L + SL S++E +LS G + +DG++ +++ Sbjct: 89 VYLSTNTYYMLPEALINNVFSL---------SDKEKRE-SLSLGVILNDDGTISSTEIVQ 138 Query: 482 SLIRRPWRLTY 514 SLI+ +RL + Sbjct: 139 SLIQVDYRLDF 149 [95][TOP] >UniRef100_B7A7Y9 Ribonuclease II n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7Y9_THEAQ Length = 598 Score = 71.6 bits (174), Expect = 3e-11 Identities = 58/160 (36%), Positives = 77/160 (48%), Gaps = 22/160 (13%) Frame = +2 Query: 47 PELQEAANGLL-------SAGPLASEVG-------------PSACRTDLRHLDSYAVDSA 166 PE EAA+GLL P +G P R DL HL ++A+D Sbjct: 178 PETPEAAHGLLLRLGLWRRENPHPRRLGLPLAPPDLPVPPLPEEERVDLTHLPAFAIDDE 237 Query: 167 STFEVDDAMSWEA--DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPL 340 + + DDA+ E + RL+VH+ADV+A + PG PL EALRR LYLP + MLPL Sbjct: 238 GSQDPDDALYAERVEEGFRLFVHVADVAALVGPGSPLDGEALRRGANLYLPEGAVPMLPL 297 Query: 341 ELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSL 460 + + L L G VS AL+F V+ +G L Sbjct: 298 AVT-EALGL----GLKEVSP------ALTFELLVSPEGEL 326 [96][TOP] >UniRef100_B1X3I1 Probable ribonuclease II n=1 Tax=Paulinella chromatophora RepID=B1X3I1_PAUCH Length = 476 Score = 71.6 bits (174), Expect = 3e-11 Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 9/168 (5%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPS-ACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGR 217 F+ + AN L + LA+E PS R DL L + +D T E+DDA+S+E D Sbjct: 51 FNQKQMAEANRLCA---LANEAQPSDEQRLDLTGLRCFTIDDPGTQELDDALSYEQDQDG 107 Query: 218 ---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHA 388 +W+HIAD + PG L EA +R+ +LYL + + M P+ELA LSL A Sbjct: 108 NEWIWIHIADPDRLVFPGSDLDLEAKQRATSLYLASGGLPMFPMELAAGSLSLKQGQRCA 167 Query: 389 HVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPW-----RLTYE 517 VS A+L + G +V+ +++R W RLTYE Sbjct: 168 AVS---TAILLDNCG------------EVVKIILQRSWIYPTYRLTYE 200 [97][TOP] >UniRef100_Q18FH8 Ribonuclease R homolog n=2 Tax=Halobacteriaceae RepID=Q18FH8_HALWD Length = 442 Score = 71.6 bits (174), Expect = 3e-11 Identities = 52/134 (38%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA--DTGRLWVHIADVSAWLKPGEPLTTEALRRS 295 RTDLR L ++ D + DDA+S +T LWVHIADVS ++ P + TEA+ R Sbjct: 74 RTDLRELTTWTTDPVDAQDFDDALSIRENDETYTLWVHIADVSHYVHPDSEMWTEAVERG 133 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGH-AHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 T+YLP TI MLP LA SL AH E E + LSF + Sbjct: 134 NTVYLPAYTIHMLPPVLAETVCSLVPEKDRLAHTVEMEISKETLSF----------EELD 183 Query: 473 VMPSLIRRPWRLTY 514 + S+I RLTY Sbjct: 184 IYKSVIHSDARLTY 197 [98][TOP] >UniRef100_Q1MTN7 Exoribonuclease II, mitochondrial n=1 Tax=Schizosaccharomyces pombe RepID=RPM1_SCHPO Length = 957 Score = 71.6 bits (174), Expect = 3e-11 Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 3/126 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWE---ADTGRLWVHIADVSAWLKPGEPLTTEALRR 292 R DLRHL ++A DS+ST E+DDA+S E L +H+A+ ++ + PL T A R Sbjct: 503 RVDLRHLKAFAFDSSSTKEIDDAISVEELGMSNSWLHIHVANPTSTVDIRSPLGTFAERN 562 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 T+Y P + + MLPL + + SLD+S+ A AL+F ++++G + D + Sbjct: 563 FQTIYHPNKIVYMLPLNITQKYWSLDSSS---------TAQRALTFSAKISKNGDILDYK 613 Query: 473 VMPSLI 490 V PS I Sbjct: 614 VRPSFI 619 [99][TOP] >UniRef100_UPI0001B59A2B exoribonuclease II n=1 Tax=Chlamydia trachomatis D(s)2923 RepID=UPI0001B59A2B Length = 694 Score = 71.2 bits (173), Expect = 4e-11 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T +++G L D + Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313 Query: 473 VMPSLIRRPWRLTYE 517 ++ S+IR +R+TY+ Sbjct: 314 ILRSVIRSKYRMTYD 328 [100][TOP] >UniRef100_UPI0001B46FF8 exoribonuclease II n=1 Tax=Chlamydia trachomatis 70s RepID=UPI0001B46FF8 Length = 694 Score = 71.2 bits (173), Expect = 4e-11 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T +++G L D + Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313 Query: 473 VMPSLIRRPWRLTYE 517 ++ S+IR +R+TY+ Sbjct: 314 ILRSVIRSKYRMTYD 328 [101][TOP] >UniRef100_UPI0001B46DE0 exoribonuclease II n=1 Tax=Chlamydia trachomatis 6276 RepID=UPI0001B46DE0 Length = 694 Score = 71.2 bits (173), Expect = 4e-11 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T +++G L D + Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313 Query: 473 VMPSLIRRPWRLTYE 517 ++ S+IR +R+TY+ Sbjct: 314 ILRSVIRSKYRMTYD 328 [102][TOP] >UniRef100_Q6AMK8 Related to ribonuclease R n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK8_DESPS Length = 590 Score = 71.2 bits (173), Expect = 4e-11 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 2/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P FS ++ A +L ++ R D HL +D +T + DDA++ E D Sbjct: 175 PVAFSLAARQQAEQILQTD--MDKLFDDPARIDYTHLKPITIDGPTTQDFDDALTIEKDG 232 Query: 212 GR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 + VHI+DV+ +++PG+PL EA++R ++Y P I MLP L++ SL Sbjct: 233 ENYLVGVHISDVAHYVRPGDPLFQEAMQRGTSIYFPEGQIPMLPRHLSQGICSLIQGEIR 292 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 A ALSF ++ + + ++ PS+I+ RLTYE Sbjct: 293 A----------ALSFMILLSPEAEVLRVRIRPSIIKVARRLTYE 326 [103][TOP] >UniRef100_Q46KZ5 Exoribonuclease R/ribonuclease II n=1 Tax=Prochlorococcus marinus str. NATL2A RepID=Q46KZ5_PROMT Length = 424 Score = 71.2 bits (173), Expect = 4e-11 Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 2/131 (1%) Frame = +2 Query: 128 DLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCT 301 DL HL +Y +D + T E+DDA+S E +G +LW+HIA +++++ + +A + T Sbjct: 29 DLTHLKTYTIDDSKTVEIDDAISLEQVSGQNKLWIHIASPASYIEYQSGIDEKARKLVST 88 Query: 302 LYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMP 481 +YL T MLP L + SL S++E +LS G + +DGS+ +++ Sbjct: 89 VYLSNNTYYMLPKALINNVFSL---------SDKEKRE-SLSLGVILNDDGSISSTEIVQ 138 Query: 482 SLIRRPWRLTY 514 SLI+ +RL + Sbjct: 139 SLIQVDYRLDF 149 [104][TOP] >UniRef100_Q3KLV6 Exoribonuclease II n=1 Tax=Chlamydia trachomatis A/HAR-13 RepID=Q3KLV6_CHLTA Length = 694 Score = 71.2 bits (173), Expect = 4e-11 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T +++G L D + Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313 Query: 473 VMPSLIRRPWRLTYE 517 ++ S+IR +R+TY+ Sbjct: 314 ILRSVIRSKYRMTYD 328 [105][TOP] >UniRef100_Q1AVL2 RNAse R n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVL2_RUBXD Length = 535 Score = 71.2 bits (173), Expect = 4e-11 Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRS 295 R DLR L + +D + DDA+S + G RLWVHIADV+ ++ PG L +AL R Sbjct: 102 RRDLRRLPTVTIDGEDAKDFDDAISILREDGGYRLWVHIADVTHYVDPGGALDRQALYRG 161 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 ++YLP MLP L+ D SL A V+ E +V+ +G + +V Sbjct: 162 NSVYLPGTVAPMLPARLSADVCSLRPHADRAAVTVE----------ISVSGEGEVRGWKV 211 Query: 476 MPSLIRRPWRLTYE 517 SLI RLTYE Sbjct: 212 YRSLICSDARLTYE 225 [106][TOP] >UniRef100_B0B7W7 Exoribonuclease II n=2 Tax=Chlamydia trachomatis RepID=B0B7W7_CHLT2 Length = 694 Score = 71.2 bits (173), Expect = 4e-11 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T +++G L D + Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313 Query: 473 VMPSLIRRPWRLTYE 517 ++ S+IR +R+TY+ Sbjct: 314 ILRSVIRSKYRMTYD 328 [107][TOP] >UniRef100_C4X1B1 Ribonuclease R n=2 Tax=Klebsiella pneumoniae RepID=C4X1B1_KLEPN Length = 810 Score = 71.2 bits (173), Expect = 4e-11 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + P +++ +GL P ++ G R DLR L +D + DDA+ Sbjct: 230 THEIPYVWPPAVEKQVSGLKEQVPEEAKAG----RVDLRSLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++PG PL EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTPLDAEARSRGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSKGRLTGYKFYEAVMSSHARLTY 383 [108][TOP] >UniRef100_C4PMQ4 Exoribonuclease II n=2 Tax=Chlamydia trachomatis RepID=C4PMQ4_CHLTZ Length = 694 Score = 71.2 bits (173), Expect = 4e-11 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T +++G L D + Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313 Query: 473 VMPSLIRRPWRLTYE 517 ++ S+IR +R+TY+ Sbjct: 314 ILRSVIRSKYRMTYD 328 [109][TOP] >UniRef100_A8SB02 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SB02_9FIRM Length = 707 Score = 71.2 bits (173), Expect = 4e-11 Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 7/139 (5%) Frame = +2 Query: 98 SEVGPSAC--RTDLRHLDSYAVDSASTFEVDDAMSWEA--DTG-RLWVHIADVSAWLKPG 262 +EV + C R DLR L + +DSA T ++DDA+S D G L VHIADVS ++KPG Sbjct: 232 AEVSAADCEGRMDLRALPIFTIDSAETKDIDDAISLTKTPDGGFELGVHIADVSNYVKPG 291 Query: 263 EPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFG--F 436 L EA R+ ++Y + + MLP +L SNG ++E VL L+F Sbjct: 292 SELDNEAFNRATSVYYADQVVPMLPKQL---------SNGICSLNE---GVLRLAFSCLM 339 Query: 437 TVAEDGSLGDPQVMPSLIR 493 + +DG+L D + + S+IR Sbjct: 340 RLDKDGNLTDYRFVKSVIR 358 [110][TOP] >UniRef100_B9LSB8 Ribonuclease II n=1 Tax=Halorubrum lacusprofundi ATCC 49239 RepID=B9LSB8_HALLT Length = 433 Score = 71.2 bits (173), Expect = 4e-11 Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRS 295 R DLR L ++ D + DDA+S E + G RLWVHIADV+ ++ P + EA++R+ Sbjct: 70 RKDLRDLTTWTTDPIDAQDFDDAISIEREEGAYRLWVHIADVTHYVTPDTAMWEEAVKRA 129 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGH-AHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 T+YLP TI MLP LA SL + AH E E LSF D Sbjct: 130 NTVYLPDYTIHMLPPVLAETVCSLVPNEDRLAHTVEMEIDDETLSF----------EDID 179 Query: 473 VMPSLIRRPWRLTYE 517 + S+I RLTY+ Sbjct: 180 IYKSVINSDERLTYK 194 [111][TOP] >UniRef100_O84402 Ribonuclease R n=1 Tax=Chlamydia trachomatis RepID=RNR_CHLTR Length = 694 Score = 71.2 bits (173), Expect = 4e-11 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DS+S + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T +++G L D + Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFSKEGFLSDYR 313 Query: 473 VMPSLIRRPWRLTYE 517 ++ S+IR +R+TY+ Sbjct: 314 ILRSVIRSKYRMTYD 328 [112][TOP] >UniRef100_B2A6Y6 Ribonuclease R n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6Y6_NATTJ Length = 709 Score = 70.5 bits (171), Expect = 6e-11 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 5/171 (2%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSAC--RTDLRHLDSYAVDSASTFEVDDAM 193 S YPP +L+E N E+ P R ++ L + +D + ++DDA+ Sbjct: 221 SEDYPPKVKEQLEEVPN----------EISPKDYEGRELIQGLPTVTIDGSDAKDLDDAV 270 Query: 194 SWEA-DTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLS 364 S E D G L VHIADVS +++ G PL EA +R ++YL + MLP +L+ + S Sbjct: 271 SLEKLDNGNMELGVHIADVSYYVREGTPLDKEARQRGTSVYLVDRVLPMLPPKLSNNICS 330 Query: 365 LDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 L+ L +S + E+G + + ++ PS+I+ +RLTYE Sbjct: 331 LNPGVER----------LTMSAFVELTEEGDIANYRLTPSVIKSNYRLTYE 371 [113][TOP] >UniRef100_A1AN74 Ribonuclease R n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AN74_PELPD Length = 777 Score = 70.5 bits (171), Expect = 6e-11 Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 2/163 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW--EA 205 P F+P+ A + P G R DLR L + +D + + DDA+S E Sbjct: 217 PHVFAPDTLAEAEAIPETVPAQELAG----RVDLRPLATVTIDGETARDFDDAVSLRREG 272 Query: 206 DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 D RLWV IADVS +++P PL +A R ++Y P I MLP L+ SL+ Sbjct: 273 DNFRLWVSIADVSHYVRPDSPLDRDAYLRGTSVYFPDRCIPMLPERLSNGICSLNPGVER 332 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 L ++ DGS+ + P +I RLTY Sbjct: 333 ----------LTMTAEMLFDRDGSMLESSFYPGIIASAARLTY 365 [114][TOP] >UniRef100_C7H5E0 Ribonuclease R n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H5E0_9FIRM Length = 705 Score = 70.5 bits (171), Expect = 6e-11 Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 3/126 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DSA T ++DDA+S G L VHIADVS ++KPG L EA R Sbjct: 242 RMDLRALPIFTIDSAETKDIDDAVSLTRLPGGGYELGVHIADVSHYVKPGSELNEEAFNR 301 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 + ++Y + + MLP L SNG ++E+E LA S + +DG+L D + Sbjct: 302 ATSVYYADQVVPMLPKSL---------SNGICSLNEKE-LRLAFSCLMRLDQDGNLTDYK 351 Query: 473 VMPSLI 490 + S+I Sbjct: 352 FVKSII 357 [115][TOP] >UniRef100_B7RW80 Ribonuclease R n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RW80_9GAMM Length = 819 Score = 70.5 bits (171), Expect = 6e-11 Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 5/152 (3%) Frame = +2 Query: 74 LLSAGPLASEVGPS--ACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIAD 238 L AG LA E R DLRHL +D + DDA+ E +G RLWV IAD Sbjct: 274 LAEAGALAEEPAEQDKLNRMDLRHLAFVTIDGEDARDFDDAVYCETASGGGWRLWVAIAD 333 Query: 239 VSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVL 418 V +++PG L EA +R+ ++Y P + MLP L+ SL + L Sbjct: 334 VCHYVRPGSALDEEASKRATSVYFPERVVPMLPEALSNGLCSLKPAVDR----------L 383 Query: 419 ALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 A+ +++ G+LG Q S+I RLTY Sbjct: 384 AMVCEMEISKAGALGKYQFYESVIHSHARLTY 415 [116][TOP] >UniRef100_C5XPP8 Putative uncharacterized protein Sb03g039500 n=1 Tax=Sorghum bicolor RepID=C5XPP8_SORBI Length = 782 Score = 70.5 bits (171), Expect = 6e-11 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS-WEADTGR 217 ++ E+ AA LL P A R DL L YA+D E+DDA+S GR Sbjct: 350 YTDEVLSAAEELLVDSPDAD----MHIRKDLSTLKVYAIDVDEADELDDALSATRLPDGR 405 Query: 218 L--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 + W+H+AD + +KP + EA+ R +++LPT TI M P LA + +SL Sbjct: 406 IKVWIHVADPTCLVKPRSIIDREAMHRGTSIFLPTATIPMFPERLAMNAMSL-------- 457 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 ++ +++ + DGS+ + + S+I+ + LTYE Sbjct: 458 --QQGKECKSVTVSVILNSDGSIAEYTLENSVIKPTYMLTYE 497 [117][TOP] >UniRef100_UPI0001A42FBC exoribonuclease R n=1 Tax=Pectobacterium carotovorum subsp. brasiliensis PBR1692 RepID=UPI0001A42FBC Length = 818 Score = 70.1 bits (170), Expect = 8e-11 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ +++E L P A++ G R DLR L +D + DDA+ Sbjct: 230 THDIPHTWPEKVEEQVKDLSEEVPEAAKKG----RVDLRKLPLVTIDGEDARDFDDAVHC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ + MLP L Sbjct: 286 EPKRGGGWRLWVAIADVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSAQGKLSSYKFYEAVMSSHARLTY 383 [118][TOP] >UniRef100_B5Y323 Ribonuclease R n=1 Tax=Klebsiella pneumoniae 342 RepID=B5Y323_KLEP3 Length = 812 Score = 70.1 bits (170), Expect = 8e-11 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + P +++ +GL P ++ G R DLR L +D + DDA+ Sbjct: 230 THEIPYVWPPAVEKQVSGLKEQVPEEAKAG----RVDLRSLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++PG PL EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSKGRLTGFKFYEAVMSSHARLTY 383 [119][TOP] >UniRef100_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NL99_9DELT Length = 782 Score = 70.1 bits (170), Expect = 8e-11 Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 SH P F+P L L + ++ P A R DLR + +DS S + DDA++ Sbjct: 287 SHQLPHRFAPAL------LAEVEAYSDKIEPQASRLDLREIPHVTIDSESARDYDDAVAV 340 Query: 200 E--ADTG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E A G RL+V IADVS +++PG L EA R ++Y P + MLP L+ D SL Sbjct: 341 EPLAKGGLRLYVSIADVSHYVQPGSALDDEAYARGTSVYFPGRVVPMLPERLSNDLCSL- 399 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 V +++ ++ F G + SLIR RLTY Sbjct: 400 -------VPDQDRYTMSAIIDFD--GKGQRKSARFGKSLIRSRHRLTY 438 [120][TOP] >UniRef100_C2D5G8 Exoribonuclease R n=1 Tax=Lactobacillus brevis subsp. gravesensis ATCC 27305 RepID=C2D5G8_LACBR Length = 780 Score = 70.1 bits (170), Expect = 8e-11 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 3/173 (1%) Frame = +2 Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184 L++ SH P F ++ +AA+ + + G R D+ D +D S+ ++D Sbjct: 220 LQIVYSHDIPAEFPEDVLQAADAIPDHVTEEEKAG----REDITDQDLVTIDGESSKDLD 275 Query: 185 DAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355 DA++ W+ G L VHIADVS ++K G + EA RR ++YL I MLP L Sbjct: 276 DAVTAWKLPNGNYHLGVHIADVSHYVKAGGLIDKEAYRRGTSVYLTDRVIPMLPRRL--- 332 Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++E E L +S + + G++ ++ PSL+R R+TY Sbjct: 333 ------SNGICSLNEGE-LRLCMSCEMEIDQSGNVVKHRIHPSLMRSKARMTY 378 [121][TOP] >UniRef100_C0XMN5 Exoribonuclease R n=1 Tax=Lactobacillus hilgardii ATCC 8290 RepID=C0XMN5_LACHI Length = 780 Score = 70.1 bits (170), Expect = 8e-11 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 3/173 (1%) Frame = +2 Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184 L++ SH P F ++ +AA+ + P A R D+ D +D S+ ++D Sbjct: 220 LQIVYSHDIPAEFPEDVLQAADAI----PDHITEEEKAGREDITDQDLVTIDGESSKDLD 275 Query: 185 DAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355 DA++ W+ G L VHIADVS ++K G + EA RR ++YL I MLP L Sbjct: 276 DAVTAWKLPNGNYHLGVHIADVSHYVKAGGLIDKEAYRRGTSVYLTDRVIPMLPRRL--- 332 Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++E E L +S + + G++ ++ PSL+R R+TY Sbjct: 333 ------SNGICSLNEGE-LRLCMSCEMEIDQSGNVVKHRIHPSLMRSKARMTY 378 [122][TOP] >UniRef100_C0WUC0 Exoribonuclease R n=1 Tax=Lactobacillus buchneri ATCC 11577 RepID=C0WUC0_LACBU Length = 780 Score = 70.1 bits (170), Expect = 8e-11 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 3/173 (1%) Frame = +2 Query: 5 LELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVD 184 L++ SH P F ++ +AA+ + + G R D+ D +D S+ ++D Sbjct: 220 LQIVYSHDIPAEFPEDVLQAADAIPDHVTEEEKAG----REDITDQDLVTIDGESSKDLD 275 Query: 185 DAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355 DA++ W+ G L VHIADVS ++K G + EA RR ++YL I MLP L Sbjct: 276 DAVTAWKLPNGNYHLGVHIADVSHYVKAGGLIDKEAYRRGTSVYLTDRVIPMLPRRL--- 332 Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++E E L +S + + G++ ++ PSL+R R+TY Sbjct: 333 ------SNGICSLNEGE-LRLCMSCEMEIDQSGNVVKHRIHPSLMRSKARMTY 378 [123][TOP] >UniRef100_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WY09_9DELT Length = 803 Score = 70.1 bits (170), Expect = 8e-11 Identities = 61/173 (35%), Positives = 81/173 (46%), Gaps = 4/173 (2%) Frame = +2 Query: 11 LRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDA 190 ++ +H P F P +Q A+ L SA A G R D+R L +D A + DDA Sbjct: 230 VKLNHEVPREFPPRVQAEADALPSAPRHADMAG----REDVRALPLVTIDGADARDFDDA 285 Query: 191 MSWEADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361 + EA G W V IADVS +++P L TEAL R + Y PT MLP L DGL Sbjct: 286 VQVEARPGGGWLLRVAIADVSHYVRPRSALDTEALARGNSWYFPTSVEPMLPPALC-DGL 344 Query: 362 SLDASNGHAHVSEEENAVLA-LSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 E+ A+LA + F T G G P+ ++R RLTY+ Sbjct: 345 C------SLRPDEDRLAMLAEIPFSAT----GQPGKPRFAAVVMRSAARLTYD 387 [124][TOP] >UniRef100_B5IJX0 Exoribonuclease, VacB/RNB family protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IJX0_9CHRO Length = 654 Score = 70.1 bits (170), Expect = 8e-11 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 5/163 (3%) Frame = +2 Query: 41 FSPELQEAANGLLSA--GPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTG 214 FS +L+ A L+ GP A + R DL L +D A T ++DDA+ E Sbjct: 232 FSADLEAEARRLIDRADGPCAGD----GDRLDLTALHCVTIDDADTRDIDDAIGLERCAD 287 Query: 215 ---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 RLW+HIAD + PL EA RR +LYL + T+ M P LA LSL A + Sbjct: 288 GLLRLWIHIADPGRLVALDSPLDVEARRRGSSLYLASGTLPMFPEALATGPLSLVAGRRN 347 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 A A S G + +G++ ++ S +R +RL+Y Sbjct: 348 A----------AWSLGLELDGEGAITATRLARSWVRPTYRLSY 380 [125][TOP] >UniRef100_Q824B3 Exoribonuclease, VacB/Rnb family n=1 Tax=Chlamydophila caviae RepID=Q824B3_CHLCV Length = 678 Score = 69.7 bits (169), Expect = 1e-10 Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DS + + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 207 RKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYILGVHIADVSHYVTPHSALDQEASKR 266 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T ++G L D + Sbjct: 267 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDR----------LAVSVFMTFTKEGHLSDYE 316 Query: 473 VMPSLIRRPWRLTYE 517 V S+IR +R+TY+ Sbjct: 317 VFRSVIRSKYRMTYD 331 [126][TOP] >UniRef100_B0S925 Exoribonuclease R n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S925_LEPBA Length = 730 Score = 69.7 bits (169), Expect = 1e-10 Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSW--EADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295 RTDLR L + +D + + DDA+S+ E + R+W+HIADVS +++ G L EA R+ Sbjct: 274 RTDLRDLYAVTIDGITAKDFDDAISFVDEGNRLRIWIHIADVSYYVEKGSALDKEAYERA 333 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 ++YL + MLP L+ D SL A+ LA + ++ G + + + Sbjct: 334 TSVYLANRVVPMLPPILSEDLCSLVANTNR----------LAFTVEMEASKSGEIYNAKF 383 Query: 476 MPSLIRRPWRLTYE 517 S+I+ R TYE Sbjct: 384 YKSIIKVKKRYTYE 397 [127][TOP] >UniRef100_A8ZTJ4 Exoribonuclease II n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTJ4_DESOH Length = 666 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 3/167 (1%) Frame = +2 Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202 H P ++ ++ +A+ L++ + S GP R DL L + +D + T + DDA+S E Sbjct: 244 HRVPVSWPDDVTKASEKLVATAGIPS-AGPD--RVDLTGLSLFTIDGSQTLDFDDALSLE 300 Query: 203 A-DTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373 + G RL +HI+DV ++K +PL EAL+R ++Y + I MLP E++ SL A Sbjct: 301 PMENGACRLGIHISDVGHYIKKEDPLDAEALKRGSSIYTADKKIPMLPAEISEGLCSLVA 360 Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 A+S T++ + + +V+ S+IR LTY Sbjct: 361 GKPRP----------AISMLITLSSSAEVMECRVVASVIRVENHLTY 397 [128][TOP] >UniRef100_A5G505 Ribonuclease R n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G505_GEOUR Length = 763 Score = 69.7 bits (169), Expect = 1e-10 Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRR 292 RTDLR + +D + + DDA+S + + RLWV IADVS ++KPG P+ EA R Sbjct: 244 RTDLRGRPTVTIDGETARDFDDAVSVKREGKGNIRLWVSIADVSHYVKPGSPIDREAYLR 303 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P I MLP EL+ SL+ + V+ E + FG G + Sbjct: 304 GTSVYFPDRCIPMLPEELSNGICSLNPTVDRLTVTAE------MLFG----PSGEMLQAS 353 Query: 473 VMPSLIRRPWRLTY 514 PS+I+ RLTY Sbjct: 354 FYPSVIKSAARLTY 367 [129][TOP] >UniRef100_C8QL69 Ribonuclease R n=1 Tax=Dickeya dadantii Ech586 RepID=C8QL69_DICDA Length = 824 Score = 69.7 bits (169), Expect = 1e-10 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P ++ P+++E + L P +++ G R DLR L +D + DDA+ Sbjct: 230 THEIPHSWPPKVEEQVSDLAEEVPESAKKG----RVDLRSLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++PG L EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSTQGKLSGYKFYEAVMSSHARLTY 383 [130][TOP] >UniRef100_C6NKN4 Ribonuclease R n=1 Tax=Pectobacterium wasabiae WPP163 RepID=C6NKN4_9ENTR Length = 818 Score = 69.7 bits (169), Expect = 1e-10 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P+++E L P A++ G R DLR L +D + DDA+ Sbjct: 230 THDIPHTWPPKVEEQVKDLSEEVPEAAKKG----RVDLRKLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P L EA R ++Y P++ + MLP L Sbjct: 286 EQKRGGGWRLWVAIADVSYYVRPNTALDHEARARGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSAQGKLSSYKFYEAVMSSHARLTY 383 [131][TOP] >UniRef100_C1MV31 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MV31_9CHLO Length = 636 Score = 69.7 bits (169), Expect = 1e-10 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 12/137 (8%) Frame = +2 Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVG-----PSACRTDLR-HLDSYAVDSASTFEVD 184 H P F + + A+ + +A A++ +A R DLR D YA+D TFEVD Sbjct: 91 HGIPTAFPARVLDEADAVEAAAIAAADGDVDDDVDAATRKDLRGRFDVYAIDGDDTFEVD 150 Query: 185 DAMSWEA------DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLEL 346 D +S EA D R+W+H+ADV+ ++ G L EA R + Y P ++M P L Sbjct: 151 DGVSAEAMGPGSGDAIRVWIHVADVARHVRLGGALEAEARERGASGYAPDRVVSMFPPRL 210 Query: 347 ARDGLSLDASNGHAHVS 397 A + LSL + VS Sbjct: 211 AAETLSLRLNEPRCAVS 227 [132][TOP] >UniRef100_Q9Z848 Ribonuclease R n=1 Tax=Chlamydophila pneumoniae RepID=RNR_CHLPN Length = 676 Score = 69.7 bits (169), Expect = 1e-10 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 3/172 (1%) Frame = +2 Query: 11 LRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDA 190 ++A + F PE+ E A+ L + ++V S R DLR L + +DS++ + DDA Sbjct: 174 IQAEYNLAEEFPPEVIEEAS--LFSQKHITQVLHS--RKDLRDLLCFTIDSSTARDFDDA 229 Query: 191 MSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361 +S D L VHIADVS ++ P L EA +R + Y P + I MLP L+ + Sbjct: 230 ISLTYDHNNNYILGVHIADVSHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLC 289 Query: 362 SLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 SL + LA+S T + G L D Q+ S+IR +R+TY+ Sbjct: 290 SLKPNVDR----------LAVSVFMTFTKSGHLSDYQIFRSVIRSKYRMTYD 331 [133][TOP] >UniRef100_B8FGU6 Exoribonuclease II n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGU6_DESAA Length = 669 Score = 69.3 bits (168), Expect = 1e-10 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 2/163 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P F E+ + AN L + ++ R D L +D +T + DDA+S E D Sbjct: 253 PIDFPREISQEANALANGSGFRTDTSQ---RRDFTGLPVLTIDGQATLDYDDALSLEMDG 309 Query: 212 G--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 R+ +HI+DVS +++ G L EA RS ++Y+P + I M P LA LSL A Sbjct: 310 DYFRVGIHISDVSHYVERGSLLDQEAFARSSSIYMPDDKIPMFPPLLAEGLLSLKA---- 365 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + A+S + D + D ++ PSL+R +LTY Sbjct: 366 ------DQVRPAISVMVRLDRDAVVLDYEICPSLVRVRRQLTY 402 [134][TOP] >UniRef100_A1VBI0 Ribonuclease R n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1VBI0_DESVV Length = 886 Score = 69.3 bits (168), Expect = 1e-10 Identities = 58/171 (33%), Positives = 79/171 (46%), Gaps = 3/171 (1%) Frame = +2 Query: 11 LRASHFYPPTFS-PELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDD 187 ++ +H P F P L+EAA P A G A R DLRH++ +D A + DD Sbjct: 224 VKINHGVPTEFPVPVLEEAATL-----PPAPGGGDFADRIDLRHMEFVTIDGARARDFDD 278 Query: 188 AMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361 A+ E RLWV IADVS +++PG + EAL RS + Y P MLP L+ Sbjct: 279 AICVEEQGKGWRLWVAIADVSHYVRPGSAMDREALERSNSYYFPQSVEPMLPEALSNGLC 338 Query: 362 SLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SL+ LA+ +GS G + P++I RLTY Sbjct: 339 SLNPRVPR----------LAMVAEIYFFGEGSPGKCKFYPAVIESKARLTY 379 [135][TOP] >UniRef100_Q2BIF4 Ribonuclease R n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIF4_9GAMM Length = 881 Score = 69.3 bits (168), Expect = 1e-10 Identities = 54/148 (36%), Positives = 76/148 (51%), Gaps = 5/148 (3%) Frame = +2 Query: 86 GPLASEVGPSAC--RTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAW 250 G LA+EV +A R DLR L +D + DDA+ E RLWV IADVS + Sbjct: 253 GELAAEVEENAKQNRVDLRDLPLVTIDGEDAKDFDDAVYAERKKSGGWRLWVAIADVSWY 312 Query: 251 LKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSF 430 ++PG L EA +RS + Y P + MLP EL +GL + + HV LA+ Sbjct: 313 VRPGSELDNEAFKRSNSTYFPEFVVPMLP-ELLSNGL----CSLNPHVDR-----LAMVC 362 Query: 431 GFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 T++E G+L + ++I+ RLTY Sbjct: 363 EMTISESGNLSGYKFYEAVIQSHARLTY 390 [136][TOP] >UniRef100_Q1NRA8 Exoribonuclease II n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRA8_9DELT Length = 663 Score = 69.3 bits (168), Expect = 1e-10 Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 2/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P F+PE AA + P A+E+ R DLR L +D AST ++DDA+ + Sbjct: 246 PVEFAPEELAAAEAM--GEPEAAELLAEG-RRDLRQLPVMTIDGASTRDLDDALHIQRQG 302 Query: 212 G--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 ++ +HIADV+ ++KPG L A+RR +LY P + MLP L+ + SL A Sbjct: 303 ANFQVGIHIADVAHFVKPGSILFNAAVRRVTSLYFPEGQVPMLPPRLSENLCSLLAGRPR 362 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 A+SF T+ G + D + +++ RL Y+ Sbjct: 363 P----------AMSFLLTITPQGEIVDSSIEATVVEVKKRLDYD 396 [137][TOP] >UniRef100_Q728Y5 Ribonuclease R n=2 Tax=Desulfovibrio vulgaris RepID=Q728Y5_DESVH Length = 886 Score = 69.3 bits (168), Expect = 1e-10 Identities = 58/171 (33%), Positives = 79/171 (46%), Gaps = 3/171 (1%) Frame = +2 Query: 11 LRASHFYPPTFS-PELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDD 187 ++ +H P F P L+EAA P A G A R DLRH++ +D A + DD Sbjct: 224 VKINHGVPTEFPVPVLEEAATL-----PPAPGGGDFADRIDLRHMEFVTIDGARARDFDD 278 Query: 188 AMSWEADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361 A+ E RLWV IADVS +++PG + EAL RS + Y P MLP L+ Sbjct: 279 AICVEEQGKGWRLWVAIADVSHYVRPGSAMDREALERSNSYYFPQSVEPMLPEALSNGLC 338 Query: 362 SLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SL+ LA+ +GS G + P++I RLTY Sbjct: 339 SLNPRVPR----------LAMVAEIYFFGEGSPGKCKFYPAVIESKARLTY 379 [138][TOP] >UniRef100_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC4_9BACT Length = 682 Score = 69.3 bits (168), Expect = 1e-10 Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR--LWVHIADVSAWLKPGEPLTTEALRRS 295 RTDLR L + +D + + DDA+S E L+VHIADV +++PG P+ EA RR Sbjct: 232 RTDLRSLPTVTIDGETAKDFDDAISIEKTENEFILYVHIADVCHFVQPGTPVDNEAYRRG 291 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 + Y P + MLP L SNG + E+ LAL+ T +DG Sbjct: 292 TSFYFPEFAVPMLPESL---------SNGLCSLRPNEDR-LALTAKITYTKDGQRKKAYF 341 Query: 476 MPSLIRRPWRLTY 514 S+I RLTY Sbjct: 342 YRSIINSDRRLTY 354 [139][TOP] >UniRef100_UPI0001698860 ribonuclease II family protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698860 Length = 228 Score = 68.9 bits (167), Expect = 2e-10 Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 1/137 (0%) Frame = +2 Query: 110 PSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALR 289 P R DL HL +YA+D A + DDA+S D R+WVH+AD +A + P + EA Sbjct: 15 PEDQRLDLTHLTAYAIDDAGNQDPDDAVS--LDDERIWVHVADAAALVTPESEIDIEARS 72 Query: 290 RSCTLYLPTETITMLPLELAR-DGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGD 466 R LY P + + MLP + GL L + ALS GF ++E G + D Sbjct: 73 RGSNLYSPEQIVPMLPPGITHLLGLGLQQESP------------ALSIGFLLSEAGEVMD 120 Query: 467 PQVMPSLIRRPWRLTYE 517 Q+ + ++ RL+Y+ Sbjct: 121 VQMQLTRLKVE-RLSYD 136 [140][TOP] >UniRef100_Q0JHU4 Os01g0841800 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q0JHU4_ORYSJ Length = 548 Score = 68.9 bits (167), Expect = 2e-10 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW-EADTGR 217 ++ E+ AA LL P + + R DL L YA+D E+DDA+S GR Sbjct: 352 YTEEVLSAAEELLVDCPDSDK----DIRKDLSTLKVYAIDVDEADELDDALSAARLPDGR 407 Query: 218 L--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 + W+H+AD ++ ++P + EA+ R +++LPT T M P LA + +SL G Sbjct: 408 IKVWIHVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRG--- 464 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +++ + DGS+ + + S+I+ + LTYE Sbjct: 465 -------CKSVTVSVILQPDGSIAEYSIENSIIKPTYMLTYE 499 [141][TOP] >UniRef100_A1AXH8 Ribonuclease II n=1 Tax=Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) RepID=A1AXH8_RUTMC Length = 601 Score = 68.9 bits (167), Expect = 2e-10 Identities = 48/124 (38%), Positives = 68/124 (54%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 R DL +L SYA+D+A + + DDA+S + D +++VHIADVS G L A R+ Sbjct: 220 RVDLTYLSSYAIDNADSNDADDAISIDGD--KIFVHIADVSLIATVGSELDAYAQERASN 277 Query: 302 LYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMP 481 LYLP + I MLP+ + + G A S ALS GFT+ E G + +V+ Sbjct: 278 LYLPEQIIHMLPISATK-----MCALGLAETSN------ALSIGFTL-ESGEIDHIEVVH 325 Query: 482 SLIR 493 SLI+ Sbjct: 326 SLIK 329 [142][TOP] >UniRef100_A0KG59 Ribonuclease R n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KG59_AERHH Length = 799 Score = 68.9 bits (167), Expect = 2e-10 Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ E+ + GL P ++ G R DLR L +D + DDA+ Sbjct: 231 THGIPHTWPEEVTKEVAGLGEQVPEKAKEG----RIDLRALPLVTIDGEDARDFDDAVFC 286 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361 EA G RLWV IADVSA++KPG L TEA +R ++Y P + MLP E+ +GL Sbjct: 287 EAKRGGGWRLWVAIADVSAYVKPGTALDTEAYQRGNSVYFPEFVVPMLP-EVLSNGL 342 [143][TOP] >UniRef100_C6YKQ8 Ribonuclease R n=1 Tax=Vibrio cholerae MO10 RepID=C6YKQ8_VIBCH Length = 821 Score = 68.9 bits (167), Expect = 2e-10 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + E+++ GL P ++ G R DLR L +D + DDA+ Sbjct: 237 THQIPHEWPAEVEQQVAGLTEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 292 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L Sbjct: 293 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+E G L + +++ RLTY Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 390 [144][TOP] >UniRef100_C4UM56 Ribonuclease R n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UM56_YERRU Length = 837 Score = 68.9 bits (167), Expect = 2e-10 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P++++ L P ++ G R DLR L +D + DDA+ Sbjct: 230 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRELPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++PG L EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTALDAEARARGNSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSQGKLSSYKFYEAVMSSHARLTY 383 [145][TOP] >UniRef100_B2L1Z1 Exoribonuclease R n=1 Tax=Aeromonas hydrophila RepID=B2L1Z1_AERHY Length = 797 Score = 68.9 bits (167), Expect = 2e-10 Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ E+ + GL P ++ G R DLR L +D + DDA+ Sbjct: 231 THGIPHTWPEEVTKEVAGLGEQVPEKAKEG----RIDLRALPLVTIDGEDARDFDDAVFC 286 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361 EA G RLWV IADVSA++KPG L TEA +R ++Y P + MLP E+ +GL Sbjct: 287 EAKRGGGWRLWVAIADVSAYVKPGTALDTEAYQRGNSVYFPEFVVPMLP-EVLSNGL 342 [146][TOP] >UniRef100_A3GU97 Ribonuclease R (Fragment) n=1 Tax=Vibrio cholerae NCTC 8457 RepID=A3GU97_VIBCH Length = 531 Score = 68.9 bits (167), Expect = 2e-10 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + E+++ GL P ++ G R DLR L +D + DDA+ Sbjct: 92 THQIPHEWPAEVEQQVAGLTEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 147 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L Sbjct: 148 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 199 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+E G L + +++ RLTY Sbjct: 200 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 245 [147][TOP] >UniRef100_A1FAX0 Ribonuclease R (Fragment) n=1 Tax=Vibrio cholerae 2740-80 RepID=A1FAX0_VIBCH Length = 415 Score = 68.9 bits (167), Expect = 2e-10 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + E+++ GL P ++ G R DLR L +D + DDA+ Sbjct: 199 THQIPHEWPAEVEQQVAGLTEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 254 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L Sbjct: 255 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 306 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+E G L + +++ RLTY Sbjct: 307 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 352 [148][TOP] >UniRef100_A5F552 Ribonuclease R n=9 Tax=Vibrio cholerae RepID=A5F552_VIBC3 Length = 821 Score = 68.9 bits (167), Expect = 2e-10 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + E+++ GL P ++ G R DLR L +D + DDA+ Sbjct: 237 THQIPHEWPAEVEQQVAGLTEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 292 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L Sbjct: 293 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+E G L + +++ RLTY Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 390 [149][TOP] >UniRef100_B9EUD2 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=B9EUD2_ORYSJ Length = 774 Score = 68.9 bits (167), Expect = 2e-10 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW-EADTGR 217 ++ E+ AA LL P + + R DL L YA+D E+DDA+S GR Sbjct: 347 YTEEVLSAAEELLVDCPDSDK----DIRKDLSTLKVYAIDVDEADELDDALSAARLPDGR 402 Query: 218 L--WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 + W+H+AD ++ ++P + EA+ R +++LPT T M P LA + +SL G Sbjct: 403 IKVWIHVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRG--- 459 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +++ + DGS+ + + S+I+ + LTYE Sbjct: 460 -------CKSVTVSVILQPDGSIAEYSIENSIIKPTYMLTYE 494 [150][TOP] >UniRef100_Q9KNY1 Ribonuclease R n=8 Tax=Vibrio cholerae RepID=RNR_VIBCH Length = 821 Score = 68.9 bits (167), Expect = 2e-10 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + E+++ GL P ++ G R DLR L +D + DDA+ Sbjct: 237 THQIPHEWPAEVEQQVAGLTEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 292 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L Sbjct: 293 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+E G L + +++ RLTY Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 390 [151][TOP] >UniRef100_B8DP48 Ribonuclease R n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DP48_DESVM Length = 1037 Score = 68.6 bits (166), Expect = 2e-10 Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 2/170 (1%) Frame = +2 Query: 11 LRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDA 190 ++ +H P F PE+ E A L P R DLRHL+ +D A + DDA Sbjct: 223 VKINHDVPGDFPPEVLEEARDL----PAVPGRDDMEGRIDLRHLEFVTIDGAKARDFDDA 278 Query: 191 MSWEAD-TG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLS 364 + E TG RLWV IADV+ +++PG + EA RS + Y P MLP L Sbjct: 279 VYVEEQGTGYRLWVAIADVAHYVRPGSAMDREAQARSNSYYFPQSVEPMLPEAL------ 332 Query: 365 LDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + ++ F A DG+ G + ++I RLTY Sbjct: 333 ---SNGLCSLNPRVPRLAMVAETFFYA-DGTPGRSKFYAAIIESKARLTY 378 [152][TOP] >UniRef100_A1RNJ3 RNAse R n=2 Tax=Shewanella RepID=A1RNJ3_SHESW Length = 807 Score = 68.6 bits (166), Expect = 2e-10 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P T+SP +++ + A +VG R DLRHL +D + DDA+ E Sbjct: 234 PHTWSPVIEKKLRRIPDEVTEADKVG----RVDLRHLPLVTIDGEDARDFDDAVYAEKKA 289 Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 G RLWV IADVS +++ L TEA R ++Y P++ I MLP +++ SL Sbjct: 290 GGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSL----- 344 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + HV L + TV+ G L + P+++ R TY Sbjct: 345 NPHVDR-----LCMVAEMTVSAKGKLSGYKFYPAVMYSHARFTY 383 [153][TOP] >UniRef100_B6AMJ8 Exoribonuclease II n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AMJ8_9BACT Length = 744 Score = 68.6 bits (166), Expect = 2e-10 Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Frame = +2 Query: 101 EVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEAD---TGRLWVHIADVSAWLKPGEPL 271 EV PS R DLRHL+ +D + DDA+S T ++ +HIADV+A++ PG L Sbjct: 246 EVEPSENRVDLRHLEIMTIDGDRARDFDDALSVVESPDGTFQIGIHIADVAAYVLPGSEL 305 Query: 272 TTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAED 451 EA RR ++Y P + M P L+ LSL+ LA + ++ Sbjct: 306 DKEAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDR----------LARTVMVRMSPA 355 Query: 452 GSLGDPQVMPSLIRRPWRLTY 514 G + + + S+IR R TY Sbjct: 356 GQVLESSIFRSVIRSRLRATY 376 [154][TOP] >UniRef100_B5JY34 Ribonuclease R n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JY34_9GAMM Length = 762 Score = 68.6 bits (166), Expect = 2e-10 Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 SH P F E+ E +N L A + G RTD RHL +D + DDA+ Sbjct: 256 SHNLPNEFPEEVLEESNALGDVVDEADKQG----RTDYRHLPLITIDGEDAKDFDDAVYA 311 Query: 200 EADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 EA+ RL+V IADVS ++KP PL EA +R+ ++Y P I MLP L+ SL+ Sbjct: 312 EANEQGWRLYVAIADVSHYVKPQSPLDQEAAKRATSVYFPGRVIPMLPESLSNGLCSLN 370 [155][TOP] >UniRef100_A2V290 Ribonuclease R n=1 Tax=Shewanella putrefaciens 200 RepID=A2V290_SHEPU Length = 807 Score = 68.6 bits (166), Expect = 2e-10 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P T+SP +++ + A +VG R DLRHL +D + DDA+ E Sbjct: 234 PHTWSPVIEKKLRRIPDEVTEADKVG----RVDLRHLPLVTIDGEDARDFDDAVYAEKKA 289 Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 G RLWV IADVS +++ L TEA R ++Y P++ I MLP +++ SL Sbjct: 290 GGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSL----- 344 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + HV L + TV+ G L + P+++ R TY Sbjct: 345 NPHVDR-----LCMVAEMTVSAKGKLSGYKFYPAVMYSHARFTY 383 [156][TOP] >UniRef100_Q5L6M9 Putative ribonuclease n=1 Tax=Chlamydophila abortus RepID=Q5L6M9_CHLAB Length = 682 Score = 68.2 bits (165), Expect = 3e-10 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DS + + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 207 RKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYILGVHIADVSHYVTPHSALDQEASKR 266 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T + G L D + Sbjct: 267 CNSIYFPGKVIPMLPPALSDNLCSLKPNVDR----------LAVSVFMTFTKSGHLSDYE 316 Query: 473 VMPSLIRRPWRLTYE 517 + S+IR +R+TY+ Sbjct: 317 IFRSVIRSKYRMTYD 331 [157][TOP] >UniRef100_B3E785 Ribonuclease R n=1 Tax=Geobacter lovleyi SZ RepID=B3E785_GEOLS Length = 752 Score = 68.2 bits (165), Expect = 3e-10 Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 4/165 (2%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSAC--RTDLRHLDSYAVDSASTFEVDDAMS--W 199 P TF PE L A + S+VG + R DLR L + +D + + DDA+S Sbjct: 219 PHTFEPET------LAEAQAIPSQVGKNDLKDRVDLRKLPTVTIDGETAKDFDDAVSIRQ 272 Query: 200 EADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASN 379 E RLWV IADVS +++PG L EA R ++Y P I MLP L+ SL Sbjct: 273 EGHNFRLWVSIADVSHYIEPGSMLDREAYLRGTSVYFPDRCIPMLPERLSNGICSL---- 328 Query: 380 GHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + H+ L ++ + G + + S+I+ RLTY Sbjct: 329 -NPHLDR-----LTMTAEMLFDQQGRMLESSFYSSVIKSDARLTY 367 [158][TOP] >UniRef100_B1IDC1 Ribonuclease R n=1 Tax=Clostridium botulinum B1 str. Okra RepID=B1IDC1_CLOBK Length = 725 Score = 68.2 bits (165), Expect = 3e-10 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P F P++Q A+ + A P R DLR L +D ++DDA+S E + Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLS 273 Query: 212 GR---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ++ + + L LS + ++G + D +V+ S+I+ R+TY Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKNGKVVDHRVVESIIKSTERMTY 367 [159][TOP] >UniRef100_A9L116 Ribonuclease R n=1 Tax=Shewanella baltica OS195 RepID=A9L116_SHEB9 Length = 807 Score = 68.2 bits (165), Expect = 3e-10 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P T+SP +++ + A +VG R DLRHL +D + DDA+ E Sbjct: 234 PHTWSPVIEKKLRRIPDEVTDADKVG----RVDLRHLPLVTIDGEDARDFDDAVYAEKKA 289 Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 G RLWV IADVS +++ L TEA R ++Y P++ I MLP +++ SL Sbjct: 290 GGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSL----- 344 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + HV L + TV+ G L + P+++ R TY Sbjct: 345 NPHVDR-----LCMVAEMTVSAKGKLSGYKFYPAVMYSHARFTY 383 [160][TOP] >UniRef100_A7G9Y5 Ribonuclease R n=1 Tax=Clostridium botulinum F str. Langeland RepID=A7G9Y5_CLOBL Length = 725 Score = 68.2 bits (165), Expect = 3e-10 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P F P++Q A+ + A P R DLR L +D ++DDA+S E + Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLS 273 Query: 212 GR---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ++ + + L LS + ++G + D +V+ S+I+ R+TY Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKNGKVVDHRVVESIIKSTERMTY 367 [161][TOP] >UniRef100_A6WJ75 Ribonuclease R n=2 Tax=Shewanella baltica RepID=A6WJ75_SHEB8 Length = 807 Score = 68.2 bits (165), Expect = 3e-10 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P T+SP +++ + A +VG R DLRHL +D + DDA+ E Sbjct: 234 PHTWSPVIEKKLRRIPDEVTDADKVG----RVDLRHLPLVTIDGEDARDFDDAVYAEKKA 289 Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 G RLWV IADVS +++ L TEA R ++Y P++ I MLP +++ SL Sbjct: 290 GGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSL----- 344 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + HV L + TV+ G L + P+++ R TY Sbjct: 345 NPHVDR-----LCMVAEMTVSAKGKLSGYKFYPAVMYSHARFTY 383 [162][TOP] >UniRef100_A5GLA4 Exoribonuclease R/ribonuclease II n=1 Tax=Synechococcus sp. WH 7803 RepID=A5GLA4_SYNPW Length = 649 Score = 68.2 bits (165), Expect = 3e-10 Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA---DT 211 FS EL A L+ + ++ G S R DL HL +D A T ++DDA+ E D Sbjct: 220 FSAELTAEAERLMRCS-MQAQPGDSE-RRDLTHLACVTIDDAETKDIDDALGLERLANDH 277 Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373 R+W+HIAD S + G PL EA RR +LYL + M P +L+ + SL A Sbjct: 278 LRIWIHIADPSRLITAGSPLDLEARRRGSSLYLSRGLLPMFPSKLSSEVFSLKA 331 [163][TOP] >UniRef100_C2ECN9 Ribonuclease R 1 n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ECN9_9LACO Length = 793 Score = 68.2 bits (165), Expect = 3e-10 Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 3/134 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRR 292 R D+R +D+ + ++DDA++ W+ G L VHIADVS ++ PG PL EA R Sbjct: 261 RRDIRDQQLVTIDAIESKDLDDAVTAWKLPNGNYHLGVHIADVSHYVTPGTPLDDEAFSR 320 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++YL I MLP +L SNG ++ + + LALS + +G + + Sbjct: 321 GTSVYLTDRVIPMLPAKL---------SNGICSLNPKVDR-LALSCDMEITPEGEIIAHE 370 Query: 473 VMPSLIRRPWRLTY 514 + PS+I+ R+TY Sbjct: 371 IYPSVIKTTERMTY 384 [164][TOP] >UniRef100_C1FQW8 Ribonuclease R n=2 Tax=Clostridium botulinum RepID=C1FQW8_CLOBJ Length = 725 Score = 68.2 bits (165), Expect = 3e-10 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P F P++Q A+ + A P R DLR L +D ++DDA+S E + Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLS 273 Query: 212 GR---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ++ + + L LS + ++G + D +V+ S+I+ R+TY Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKNGKVVDHRVVESIIKSTERMTY 367 [165][TOP] >UniRef100_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis MED297 RepID=A4BI97_9GAMM Length = 647 Score = 68.2 bits (165), Expect = 3e-10 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 2/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-SWEAD 208 P FS + A L AGP E PS R DL L +D+AST ++DDA+ + + Sbjct: 182 PEAFSDAELKQAKALAEAGP---ETDPS--RQDLTDLPFVTIDAASTKDMDDALFARPTE 236 Query: 209 TG-RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 G +L V IAD SA++ L A +R T YLP T+ MLP LA +SL Sbjct: 237 NGWQLSVAIADASAYIPLDSELDKAAQKRLTTTYLPGLTLPMLPEILADSAMSL------ 290 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 V +E A+ F + DG++ D ++ P+ +R +L Y+ Sbjct: 291 --VPDETRP--AMIFQMQIDRDGNVSDFEIFPATVRSQAKLAYD 330 [166][TOP] >UniRef100_UPI000179487B hypothetical protein CLOSPO_00726 n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=UPI000179487B Length = 725 Score = 67.8 bits (164), Expect = 4e-10 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205 P F P++Q A+ + A P R DLR L +D ++DDA+S E Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----RKDLRDLTIVTIDGEDAKDLDDAISLERLP 273 Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ++ + + L LS + ++G + D +V+ S+I+ R+TY Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKNGKVVDHKVVESIIKSTERMTY 367 [167][TOP] >UniRef100_Q3B5H6 3'-5' exoribonuclease, VacB and RNase II n=1 Tax=Chlorobium luteolum DSM 273 RepID=Q3B5H6_PELLD Length = 762 Score = 67.8 bits (164), Expect = 4e-10 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 3/163 (1%) Frame = +2 Query: 38 TFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGR 217 TF E+ +AA+ + G ++ R D+R + +D + DDA+S E Sbjct: 269 TFDKEIVKAASAM-KMGVTDKDLQE---RLDVRDKVLFTIDPVDAKDFDDALSVEPLENG 324 Query: 218 LW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHA 388 LW VHIADVS ++ PL EAL+R+ ++YL I MLP L+ D SL+ Sbjct: 325 LWKIGVHIADVSHYVTEDSPLDKEALKRATSVYLVDRVIPMLPSRLSEDICSLNPGVDR- 383 Query: 389 HVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +A S FT+ EDG + + ++I R TYE Sbjct: 384 ---------MAFSVFFTMTEDGKVQKHEFHKTVIHSKRRFTYE 417 [168][TOP] >UniRef100_Q2NW57 Ribonuclease R (RNase R) n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NW57_SODGM Length = 764 Score = 67.8 bits (164), Expect = 4e-10 Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 4/169 (2%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + PE+++ L P A++ G R DLR L +D + DDA+ Sbjct: 230 THDIPYVWPPEVEQQLADLQEDVPEAAKRG----RIDLRALPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG----RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367 E RLWV IADVS +++P PL EA RR+ ++Y P++ I MLP L Sbjct: 286 EKKRSGGGWRLWVAIADVSYYVRPHTPLDQEASRRATSVYFPSQVIPMLPEVL------- 338 Query: 368 DASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 339 --SNGLCSLNPQVDR-LCMVCEMTISAQGRLSSYKFYEAVMNSHARLTY 384 [169][TOP] >UniRef100_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VX0_SOLUE Length = 762 Score = 67.8 bits (164), Expect = 4e-10 Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 4/168 (2%) Frame = +2 Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW- 199 H P F PE+ E A + P A G R D R +D +D + + DDA+ W Sbjct: 238 HHLPHQFPPEVIEQAQAIPGVIPPAEFEG----RRDFRGMDIVTIDGETARDFDDAV-WV 292 Query: 200 -EADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 + +G L VHIADVS +++PG P+ EAL R ++Y P + MLP EL+ + SL Sbjct: 293 DKLPSGNYVLHVHIADVSHYVRPGTPIDREALLRGTSVYFPDRAVPMLPFELSTNLCSL- 351 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 V E+ L LS + G + + +IR R+TY Sbjct: 352 -------VPLEDR--LVLSALMEIDHRGEVVRQEFTEGVIRSVARMTY 390 [170][TOP] >UniRef100_C6CKZ7 Ribonuclease R n=1 Tax=Dickeya zeae Ech1591 RepID=C6CKZ7_DICZE Length = 822 Score = 67.8 bits (164), Expect = 4e-10 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P ++ P+++E + L P ++ G R DLR L +D + DDA+ Sbjct: 230 THEIPHSWPPKVEEQVSDLTDEVPENAKKG----RVDLRALPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++PG L EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSQGKLSGYTFYEAVMSSHARLTY 383 [171][TOP] >UniRef100_C6CAC4 Ribonuclease R n=1 Tax=Dickeya dadantii Ech703 RepID=C6CAC4_DICDC Length = 819 Score = 67.8 bits (164), Expect = 4e-10 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+S ++Q L P +++ G R DLR L +D + DDA+ Sbjct: 230 THEIPHTWSQQVQNQVADLTEEVPESAKKG----RVDLRTLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++PG L EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSTQGKLSGFKFYEAVMSSHARLTY 383 [172][TOP] >UniRef100_B1KTK0 Ribonuclease R n=1 Tax=Clostridium botulinum A3 str. Loch Maree RepID=B1KTK0_CLOBM Length = 725 Score = 67.8 bits (164), Expect = 4e-10 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P F P++Q A+ + A P R DLR L +D ++DDA+S E + Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLS 273 Query: 212 GR---LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ++ + + L LS + + G + D +V+ S+I+ R+TY Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKSGKVVDHRVVESIIKSTERMTY 367 [173][TOP] >UniRef100_A8G8V6 Ribonuclease R n=1 Tax=Serratia proteamaculans 568 RepID=A8G8V6_SERP5 Length = 828 Score = 67.8 bits (164), Expect = 4e-10 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + P++++ L P A++ G R DLR L +D + DDA+ Sbjct: 230 THEIPHVWPPQVEKQVADLSEQVPEAAKKG----RVDLRQLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P L EA R+ ++Y P+E I MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARNRATSVYFPSEVIPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISAQGRLSTAKFYEAVMSSHARLTY 383 [174][TOP] >UniRef100_A5HYC5 Ribonuclease R n=2 Tax=Clostridium botulinum A RepID=A5HYC5_CLOBH Length = 725 Score = 67.8 bits (164), Expect = 4e-10 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205 P F P++Q A+ + A P R DLR L +D ++DDA+S E Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLP 273 Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ++ + + L LS + ++G + D +V+ S+I+ R+TY Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKNGKVVDHRVVESIIKSTERMTY 367 [175][TOP] >UniRef100_C9PK35 Ribonuclease R n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PK35_VIBFU Length = 816 Score = 67.8 bits (164), Expect = 4e-10 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + E+++ GL P ++ G R DLR L +D + DDA+ Sbjct: 237 THQIPHVWPQEVEQQITGLGEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVFC 292 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L Sbjct: 293 EAKKGGGWRLWVAIADVSYYVRPNSALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T+++ G L + +++ RLTY Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTISDKGKLSGYKHYEAVMNSHARLTY 390 [176][TOP] >UniRef100_C9P233 Ribonuclease R n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P233_VIBME Length = 815 Score = 67.8 bits (164), Expect = 4e-10 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + E+ + +GL P ++ G R DLR L +D + DDA+ Sbjct: 237 THQIPHEWPDEVLKQVSGLKEEVPEEAKQG----RVDLRQLPLVTIDGEDARDFDDAVYC 292 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 EA RLWV IADVS +++PG L EA R ++Y P++ + MLP L Sbjct: 293 EARKEGGWRLWVAIADVSYYVRPGSALDKEATNRGNSVYFPSQVVPMLPEVL-------- 344 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T+++ G L D Q +++ RLTY Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTISDGGKLIDYQHYEAVMSSHARLTY 390 [177][TOP] >UniRef100_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9X2_9GAMM Length = 831 Score = 67.8 bits (164), Expect = 4e-10 Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWE--ADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295 R DLRHL +D S + DDA+ E + RL+V IADV+ +++P PL EA R Sbjct: 272 RLDLRHLPFVTIDGISARDFDDAVYAEKRGENYRLYVAIADVAHYVRPDSPLDIEAYNRG 331 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 ++Y P I MLP +L+ SL+ + LA+ T+A DGS+ Sbjct: 332 TSVYFPDRVIPMLPEKLSNGLCSLNPNVDR----------LAMVCEITLAPDGSIKRSAF 381 Query: 476 MPSLIRRPWRLTYE 517 ++I RLTYE Sbjct: 382 HDAVIHSHARLTYE 395 [178][TOP] >UniRef100_C7HG56 Ribonuclease R n=1 Tax=Clostridium thermocellum DSM 2360 RepID=C7HG56_CLOTM Length = 757 Score = 67.8 bits (164), Expect = 4e-10 Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L +D ++DDA+S E RL VHIADVS ++K G PL EAL+R Sbjct: 246 RRDLRDLTMVTIDGEDAKDLDDAVSIERLPNGNYRLGVHIADVSYYVKEGSPLDKEALKR 305 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++YL I MLP EL SNG ++ + + LA + + + G + D + Sbjct: 306 GTSVYLVDRVIPMLPKEL---------SNGICSLNPKVDR-LAFTVMMEIDKSGRVVDHE 355 Query: 473 VMPSLIRRPWRLTY 514 + S+I R+TY Sbjct: 356 IFESVINVNERMTY 369 [179][TOP] >UniRef100_A4CUF3 Exoribonuclease II n=1 Tax=Synechococcus sp. WH 7805 RepID=A4CUF3_SYNPV Length = 651 Score = 67.8 bits (164), Expect = 4e-10 Identities = 51/159 (32%), Positives = 69/159 (43%), Gaps = 3/159 (1%) Frame = +2 Query: 50 ELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA---DTGRL 220 E + NG L P SE R DL H +D A T ++DDA+ E D R+ Sbjct: 229 EAERVLNGCLDDHPGDSE------RIDLTHQTCVTIDDAETRDIDDALGLERLADDQLRI 282 Query: 221 WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSE 400 W+HIAD + G PL EA RR +LYL + M P L+ + SL A +A Sbjct: 283 WIHIADPGRLITTGSPLDLEARRRGSSLYLARGILPMFPSNLSTEVFSLKAGQRNA---- 338 Query: 401 EENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 A S + G + + S + +RLTYE Sbjct: 339 ------AWSTWVDLDHTGDVKTSGMCRSWVTPRYRLTYE 371 [180][TOP] >UniRef100_UPI00005CDADA VacB protein n=1 Tax=Xylella fastidiosa 9a5c RepID=UPI00005CDADA Length = 805 Score = 67.4 bits (163), Expect = 5e-10 Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Frame = +2 Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202 H P FS E+ +AA +A PL E G R DLR L +D + DDA+ E Sbjct: 318 HQLPHVFSQEVLDAA----AAVPLTVESGMVGGRVDLRALPLVTIDGEDAKDFDDAVYCE 373 Query: 203 ADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDAS 376 ++ RL V IADVS +++PG PL EAL R+ ++Y P + MLP L+ SL S Sbjct: 374 SNRWGFRLVVAIADVSHYVRPGTPLDEEALTRATSVYFPGFVVPMLPETLSNGICSLKPS 433 [181][TOP] >UniRef100_Q9PBZ8 VacB protein n=1 Tax=Xylella fastidiosa RepID=Q9PBZ8_XYLFA Length = 717 Score = 67.4 bits (163), Expect = 5e-10 Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Frame = +2 Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202 H P FS E+ +AA +A PL E G R DLR L +D + DDA+ E Sbjct: 230 HQLPHVFSQEVLDAA----AAVPLTVESGMVGGRVDLRALPLVTIDGEDAKDFDDAVYCE 285 Query: 203 ADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDAS 376 ++ RL V IADVS +++PG PL EAL R+ ++Y P + MLP L+ SL S Sbjct: 286 SNRWGFRLVVAIADVSHYVRPGTPLDEEALTRATSVYFPGFVVPMLPETLSNGICSLKPS 345 [182][TOP] >UniRef100_B4U994 Ribonuclease R n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U994_HYDS0 Length = 694 Score = 67.4 bits (163), Expect = 5e-10 Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDA--MSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295 R DLR + +D + DDA + E D RL+VHIADVS ++K G L EA R Sbjct: 240 RKDLRDQPCFTIDPIRAKDFDDAVYLEKEGDDYRLFVHIADVSLFVKFGSALDKEAYERG 299 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 T+YLP E I MLP EL+ + SL V E+ L++ F + L ++ Sbjct: 300 TTIYLPGEAIHMLPEELSSNLCSL--------VPNEDRFCLSVEMVFD--KSAKLKHYEI 349 Query: 476 MPSLIRRPWRLTYE 517 S+I RLTY+ Sbjct: 350 YESVINSKARLTYD 363 [183][TOP] >UniRef100_Q9RED8 VacB protein n=1 Tax=Burkholderia sp. RepID=Q9RED8_BURSP Length = 822 Score = 67.4 bits (163), Expect = 5e-10 Identities = 59/167 (35%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P FS E + A L A A G R DLRHL +D + DDA+ EA Sbjct: 319 PHQFSEEARAQAAQLPDAPAEADCRG----RVDLRHLPWLTIDGEDARDFDDAVYGEAVK 374 Query: 212 ------GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373 RL V IADVS ++KPG+ L T AL RS ++Y P I MLP EL Sbjct: 375 LGRKRGFRLRVAIADVSYYVKPGDALDTAALERSTSVYFPRRVIPMLPPEL--------- 425 Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ E + AL + G++ Q P++I RL+Y Sbjct: 426 SNGLCSLNPEVDR-CALVCDLVIDAQGAVHTCQCYPAMIHSVARLSY 471 [184][TOP] >UniRef100_C9Q5P1 Ribonuclease R n=1 Tax=Vibrio sp. RC341 RepID=C9Q5P1_9VIBR Length = 821 Score = 67.4 bits (163), Expect = 5e-10 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + E+++ GL P ++ G R DLR L +D + DDA+ Sbjct: 237 THQIPHEWPAEVEQQVAGLGEEVPEEAKQG----RVDLRALPLVTIDGEDARDFDDAVYC 292 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 EA G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L Sbjct: 293 EAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++E G L + +++ RLTY Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTISETGKLSGYKHYEAVMNSHARLTY 390 [185][TOP] >UniRef100_C3KZ51 Ribonuclease R n=2 Tax=Clostridium botulinum RepID=C3KZ51_CLOB6 Length = 725 Score = 67.4 bits (163), Expect = 5e-10 Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA-- 205 P F P++Q A+ + A P R DLR L +D ++DDA+S E Sbjct: 218 PEEFPPKVQSYADNISEAIPEEEYKR----REDLRDLTIVTIDGEDAKDLDDAISLEKLP 273 Query: 206 -DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 L VHIADVS ++K PL EAL+R+ ++YL I MLP +L SNG Sbjct: 274 NGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKL---------SNG 324 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ++ + + L LS + + G + D +V+ S+I+ R+TY Sbjct: 325 ICSLNPKIDR-LTLSCFMEIDKSGKVVDHRVVESIIKSTERMTY 367 [186][TOP] >UniRef100_A8SP48 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SP48_9FIRM Length = 727 Score = 67.4 bits (163), Expect = 5e-10 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 2/163 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P F E+ ++ L+ P + A RTDLRHL + +D ++DDA++ Sbjct: 225 PVDFPDEVMDS----LAQIPDSVSTSEMAGRTDLRHLQTVTIDGEDAKDLDDAITLYEKD 280 Query: 212 G--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGH 385 G +L VHIADV+ ++K PL EAL R + YL I MLP +L SNG Sbjct: 281 GMYKLGVHIADVTHYVKENSPLDKEALNRGTSCYLVDRVIPMLPHKL---------SNGI 331 Query: 386 AHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 ++E ++ LALS + ++G + ++ ++I R++Y Sbjct: 332 CSLNEGQDR-LALSCLMDIDKNGHIVGHKICETVINVDRRMSY 373 [187][TOP] >UniRef100_C3QS19 Ribonuclease R n=2 Tax=Bacteroides RepID=C3QS19_9BACE Length = 718 Score = 67.4 bits (163), Expect = 5e-10 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 + F P P+ E A + A A E+ A R D R + ++ +D + DDA+S Sbjct: 231 AEFGLPYVYPKAVETAADKIPAEISAEEI---AKREDFRKVTTFTIDPKDAKDFDDALSI 287 Query: 200 EADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 LW VHIADV+ ++K G + EA +R+ ++YL TI MLP L SL Sbjct: 288 RKLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL- 346 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +EE+ LA S F + E G + D +++ ++I R TYE Sbjct: 347 ------RPNEEK---LAFSVIFDITEKGEVRDSRIVHTVINSDRRFTYE 386 [188][TOP] >UniRef100_A6DIQ3 Exoribonuclease, VacB/RNB family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIQ3_9BACT Length = 668 Score = 67.4 bits (163), Expect = 5e-10 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Frame = +2 Query: 149 YAVDSASTFEVDDAMS---WEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTE 319 +++D ST +VDD +S E D ++ +HIADVSA++ L EA R+ ++YLPT Sbjct: 275 FSIDDESTSDVDDVLSVEYLENDLFKIGIHIADVSAYIAKASTLDLEAEHRATSIYLPTG 334 Query: 320 TITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRP 499 T+ M P ELA SL + ALS+ T+ DG L + SLI+ Sbjct: 335 TVNMFPAELATHKASLLPGSPKP----------ALSYYATLTSDGELRSTHIERSLIQVS 384 Query: 500 WRLTY 514 +L+Y Sbjct: 385 EKLSY 389 [189][TOP] >UniRef100_B7FT32 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FT32_PHATR Length = 813 Score = 67.4 bits (163), Expect = 5e-10 Identities = 48/140 (34%), Positives = 64/140 (45%), Gaps = 9/140 (6%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWE-------ADTGRLWVHIADVSAWLKPGEPLTTE 280 R DLR L Y +D ST E+DD +S E + +W+HIAD W L Sbjct: 305 RRDLRDLKVYTIDGESTTEIDDGLSIEIIRQPDGTERQAIWIHIADADRWAPRNSTLFHA 364 Query: 281 ALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSL 460 A R +LYLP + M P +++ + +SL A ALS + EDGS+ Sbjct: 365 ARTRYTSLYLPRGSCPMFPPQVSDNVMSLIAGQD----------ACALSLRVMLNEDGSI 414 Query: 461 GDPQ--VMPSLIRRPWRLTY 514 V PSLI +RLTY Sbjct: 415 DASTLIVTPSLIHVDYRLTY 434 [190][TOP] >UniRef100_UPI0001B4AF33 putative exoribonuclease n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AF33 Length = 714 Score = 67.0 bits (162), Expect = 7e-10 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 + F P P+ E A + A A E+ A R D R + ++ +D + DDA+S Sbjct: 228 AEFGLPYVYPQSVEKAADKIPAEISAEEI---ARREDFRKVTTFTIDPKDAKDFDDALSI 284 Query: 200 EADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 LW VHIADV+ ++K G + EA +R+ ++YL TI MLP L SL Sbjct: 285 RPLKNGLWEVGVHIADVTHYVKEGSIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL- 343 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +EE+ LA S F + E G + D +++ ++I R TYE Sbjct: 344 ------RPNEEK---LAFSAIFDITEKGEVRDSRIVHTVIESDRRFTYE 383 [191][TOP] >UniRef100_Q1J171 Ribonuclease R n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J171_DEIGD Length = 1182 Score = 67.0 bits (162), Expect = 7e-10 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEAD---T 211 F ++ E AN + + P S VG R DLR + + VD + DDA+ + T Sbjct: 487 FPADVLEEANAIPTRIPPESLVG----RLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGT 542 Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 + VHIADVS +++ G PL EA R+ ++YLP + MLP L+ SL Sbjct: 543 FVVGVHIADVSHYVREGTPLDQEAYARATSVYLPGRVLPMLPEHLSNGVCSLVP------ 596 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 E+ V AL ++ +G + D ++ PS+I RLTY+ Sbjct: 597 -FEDRLTVTAL---IELSAEGDILDVKLAPSVINSKARLTYD 634 [192][TOP] >UniRef100_Q0IAH9 Exoribonuclease, VacB/RNB family protein n=1 Tax=Synechococcus sp. CC9311 RepID=Q0IAH9_SYNS3 Length = 645 Score = 67.0 bits (162), Expect = 7e-10 Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 3/162 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEA---DT 211 FSP L E A L+ ASE + R DL H +D T ++DD ++ E + Sbjct: 222 FSPALLEEAERLVELN--ASECPGDSERIDLCHQRCVTIDDEDTRDIDDGIALERREDGS 279 Query: 212 GRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAH 391 RLW+HIAD ++ L EA RR +LYL + M P L+ SL A A Sbjct: 280 QRLWIHIADPGRLIESDSALDLEARRRGSSLYLAKGNLPMFPESLSTGPFSLRARTRTA- 338 Query: 392 VSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 A S + +G LGD + S ++ +RL+Y+ Sbjct: 339 ---------AWSIWAELTSEGELGDHGIHRSWVQPTYRLSYD 371 [193][TOP] >UniRef100_Q04E22 Exoribonuclease R n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04E22_OENOB Length = 726 Score = 67.0 bits (162), Expect = 7e-10 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRR 292 R D R +D A T ++DDA+ W+ G L VHIADVS ++ L EA +R Sbjct: 207 RPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGVHIADVSNYVPLKTSLDAEAYKR 266 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++YL I MLP E+ SNG A ++ E+ LA+S + ++G + + Sbjct: 267 GTSVYLTDRVIPMLPTEI---------SNGIASLNPNEDR-LAMSCEMEINQEGQVVKHK 316 Query: 473 VMPSLIRRPWRLTYE 517 + PS+IR R+TY+ Sbjct: 317 IQPSIIRSHARMTYD 331 [194][TOP] >UniRef100_A4SIZ0 Ribonuclease R n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SIZ0_AERS4 Length = 797 Score = 67.0 bits (162), Expect = 7e-10 Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ E+ + GL P ++ G R DLR L +D + DDA+ Sbjct: 231 THGIPHTWPEEVTKEVAGLGEQVPEKAKEG----RIDLRALPLVTIDGEDARDFDDAVFC 286 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGL 361 EA G RLWV IADVSA++KPG L EA +R ++Y P + MLP E+ +GL Sbjct: 287 EAKRGGGWRLWVAIADVSAYVKPGTALDAEAYQRGNSVYFPEFVVPMLP-EVLSNGL 342 [195][TOP] >UniRef100_C3QA61 Ribonuclease R n=1 Tax=Bacteroides sp. D1 RepID=C3QA61_9BACE Length = 718 Score = 67.0 bits (162), Expect = 7e-10 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 + F P P+ E A + A A E+ A R D R + ++ +D + DDA+S Sbjct: 231 AEFGLPYVYPKAVETAADKIPAEISAEEI---AKREDFRKVTTFTIDPKDAKDFDDALSI 287 Query: 200 EADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 LW VHIADV+ ++K G + EA +R+ ++YL TI MLP L SL Sbjct: 288 RKLKDGLWEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL- 346 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +EE+ LA S F + E G + D +++ ++I R TYE Sbjct: 347 ------RPNEEK---LAFSVIFDITEKGEIKDSRIVHTVINSDRRFTYE 386 [196][TOP] >UniRef100_B9CW31 Ribonuclease R n=1 Tax=Actinobacillus minor 202 RepID=B9CW31_9PAST Length = 779 Score = 67.0 bits (162), Expect = 7e-10 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 2/167 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-- 193 +H P T+S +++ L P ++ G R DLR L +D S + DDA+ Sbjct: 229 NHDIPHTWSEGVEKQIRQLSEEVPEEAKQG----RVDLRDLPLVTIDGESARDFDDAVFA 284 Query: 194 SWEADTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373 E D RLWV IADVS +++P L EA R ++Y PT I MLP L Sbjct: 285 QKEGDGWRLWVAIADVSYYVRPKTALDLEAANRGNSVYFPTRVIPMLPEIL--------- 335 Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L L TV+ G L Q +++ RLTY Sbjct: 336 SNGLCSLNPQVDR-LCLVAEMTVSAQGELTGYQFYEAVMNSHARLTY 381 [197][TOP] >UniRef100_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMH0_9FIRM Length = 713 Score = 67.0 bits (162), Expect = 7e-10 Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P FS E A ++A + +A R DLR L + +D A T ++DDA+S E Sbjct: 215 PVDFSEEALNQAKQYVNA---VIDEKQTAKRLDLRDLPIFTIDGADTKDIDDAISIERTE 271 Query: 212 G--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 G +L VHIADVS ++ G PL +A R ++Y+ + I MLP EL+ SL+ Sbjct: 272 GGYKLGVHIADVSHYVTEGSPLDNDAFERGTSVYIADKVIPMLPKELSNGICSLN 326 [198][TOP] >UniRef100_A0NJR2 Ribonuclease R n=1 Tax=Oenococcus oeni ATCC BAA-1163 RepID=A0NJR2_OENOE Length = 726 Score = 67.0 bits (162), Expect = 7e-10 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMS-WEADTGR--LWVHIADVSAWLKPGEPLTTEALRR 292 R D R +D A T ++DDA+ W+ G L VHIADVS ++ L EA +R Sbjct: 207 RPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGVHIADVSNYVPLKTSLDAEAYKR 266 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++YL I MLP E+ SNG A ++ E+ LA+S + ++G + + Sbjct: 267 GTSVYLTDRVIPMLPTEI---------SNGIASLNPNEDR-LAMSCEMEINQEGQVVKHK 316 Query: 473 VMPSLIRRPWRLTYE 517 + PS+IR R+TY+ Sbjct: 317 IQPSIIRSHARMTYD 331 [199][TOP] >UniRef100_C1V752 Exoribonuclease R n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1V752_9EURY Length = 440 Score = 67.0 bits (162), Expect = 7e-10 Identities = 50/134 (37%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSW--EADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295 R DLR L ++ D + DDA+S +T LWVHIADV+ ++ PG + EA++R Sbjct: 71 RQDLRDLTTWTTDPIDAQDFDDAISIAENEETYTLWVHIADVTHYVHPGSEMWEEAVKRG 130 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGH-AHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 T+YLP TI MLP LA SL + AH E E LSF + Sbjct: 131 NTVYLPAYTIHMLPPILAETVCSLVPNEDRLAHTVEMEIDKETLSF----------EEID 180 Query: 473 VMPSLIRRPWRLTY 514 + S+I RLTY Sbjct: 181 IYKSVIESDERLTY 194 [200][TOP] >UniRef100_B4F273 Ribonuclease R n=1 Tax=Proteus mirabilis HI4320 RepID=B4F273_PROMH Length = 829 Score = 66.6 bits (161), Expect = 9e-10 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P++++ L P +++ G R DLR L +D + DDA+ Sbjct: 230 THEIPHTWPPKVEKEIADLKEDVPESAKQG----RVDLRDLPLITIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 + G RLWV IADVS +++P L TEA R ++Y P++ + MLP L Sbjct: 286 QRKKGGGWRLWVAIADVSYYVRPQTALDTEARSRGNSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+E G L + +++ R+TY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSEQGRLSSYKFYEAVMSSHARMTY 383 [201][TOP] >UniRef100_C9L2E1 Ribonuclease R n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9L2E1_9BACE Length = 718 Score = 66.6 bits (161), Expect = 9e-10 Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Frame = +2 Query: 80 SAGPLASEVGPS--ACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLW---VHIADVS 244 +A + +E+ P A R D R + ++ +D + DDA+S + LW VHIADV+ Sbjct: 246 AADKIPAEITPEEIAKREDFRKVTTFTIDPKDAKDFDDALSIRSIKNGLWEVGVHIADVT 305 Query: 245 AWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLAL 424 ++K G + EA +R+ ++YL TI MLP L SL +EE+ LA Sbjct: 306 HYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL-------RPNEEK---LAF 355 Query: 425 SFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 S F + E G + D ++ ++I R TYE Sbjct: 356 SVIFDITEKGEIKDSRIAHTVINSDRRFTYE 386 [202][TOP] >UniRef100_C6I389 Ribonuclease R n=3 Tax=Bacteroides RepID=C6I389_9BACE Length = 714 Score = 66.6 bits (161), Expect = 9e-10 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 + F P P+ E A + A A E+ A R D R + ++ +D + DDA+S Sbjct: 228 AEFGLPYVYPQSVEKAADKIPAEISAEEI---ARREDFRKVTTFTIDPKDAKDFDDALSI 284 Query: 200 EADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 LW VHIADV+ ++K G + EA +R+ ++YL TI MLP L SL Sbjct: 285 RPLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL- 343 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +EE+ LA S F + E G + D +++ ++I R TYE Sbjct: 344 ------RPNEEK---LAFSAIFDITEKGEVRDSRIVHTVIESDRRFTYE 383 [203][TOP] >UniRef100_C4V602 Ribonuclease R n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V602_9FIRM Length = 898 Score = 66.6 bits (161), Expect = 9e-10 Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 2/160 (1%) Frame = +2 Query: 41 FSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAM-SWEAD-TG 214 F P++ EAA PL E A R D R +D T ++DD + ++E D Sbjct: 231 FPPDVAEAA-ARCPKDPLPEEY---AGRRDRRDFPIVTIDGEDTKDIDDGVYAYEKDGVF 286 Query: 215 RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHV 394 L V+IADVS +++ GEPL EA RR ++YL I MLP EL SNG + Sbjct: 287 FLGVYIADVSHYVRAGEPLDREAARRGTSVYLVDRVIPMLPKEL---------SNGICSL 337 Query: 395 SEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 +E + L+++ + DG + + +++P +I RLTY Sbjct: 338 NEGVDR-LSMACEMEIGMDGEVRNYEIVPCVIHVARRLTY 376 [204][TOP] >UniRef100_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP Length = 736 Score = 66.6 bits (161), Expect = 9e-10 Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 3/170 (1%) Frame = +2 Query: 17 ASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMS 196 A + P ++ E +EAA + S P A R D R + + +D A + DDA+S Sbjct: 248 AEYDLPYSYPEEAEEAARQIPSEIPSEE----MAKREDFREVFTLTIDPADAKDFDDALS 303 Query: 197 WEADTGRL---WVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367 W G L VHIADVS ++ PG + EA R+ ++YL TI MLP L D SL Sbjct: 304 WRKLEGGLVEVGVHIADVSYYVTPGSVIDKEAYDRATSIYLVDRTIPMLPERLCNDLCSL 363 Query: 368 DASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 A LA S F + E + ++ ++I R YE Sbjct: 364 ----------RPNEARLAFSCVFVLNEAAEVQSYRIGRTIIESNRRYAYE 403 [205][TOP] >UniRef100_C2LKJ2 Exoribonuclease R n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LKJ2_PROMI Length = 829 Score = 66.6 bits (161), Expect = 9e-10 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P++++ L P +++ G R DLR L +D + DDA+ Sbjct: 230 THEIPHTWPPKVEKEIADLKEDVPESAKQG----RVDLRDLPLITIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 + G RLWV IADVS +++P L TEA R ++Y P++ + MLP L Sbjct: 286 QRKKGGGWRLWVAIADVSYYVRPQTALDTEARSRGNSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+E G L + +++ R+TY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSEQGRLSSYKFYEAVMSSHARMTY 383 [206][TOP] >UniRef100_C1I4F4 Ribonuclease R n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I4F4_9CLOT Length = 745 Score = 66.6 bits (161), Expect = 9e-10 Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 3/136 (2%) Frame = +2 Query: 116 ACRTDLRHLDSYAVDSASTFEVDDAMSWEA-DTG--RLWVHIADVSAWLKPGEPLTTEAL 286 A R DLR+L +D ++DDA+S E D G RL VHIADVS +++ PL EAL Sbjct: 243 ARRKDLRNLRMVTIDGEDAKDLDDAVSIERLDNGKFRLGVHIADVSHYVREKNPLDKEAL 302 Query: 287 RRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGD 466 +R+ ++YL I MLP +L SNG ++ + + LALS + ++G + Sbjct: 303 KRATSVYLIDRVIPMLPKKL---------SNGICSLNPKVDR-LALSCFMVIDKNGKVIQ 352 Query: 467 PQVMPSLIRRPWRLTY 514 ++ S+I+ R+TY Sbjct: 353 HEIEESVIKTSERMTY 368 [207][TOP] >UniRef100_A3EPY9 Ribonuclease R n=1 Tax=Leptospirillum rubarum RepID=A3EPY9_9BACT Length = 744 Score = 66.6 bits (161), Expect = 9e-10 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Frame = +2 Query: 104 VGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEAD---TGRLWVHIADVSAWLKPGEPLT 274 V PS R DLRHL+ +D + DDA+S + T ++ +HIADV A++ PG L Sbjct: 247 VEPSENRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVLPGSELD 306 Query: 275 TEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDG 454 EA RR ++Y P + M P L+ LSL+ LA + ++ G Sbjct: 307 KEAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDR----------LARTVMVRMSPAG 356 Query: 455 SLGDPQVMPSLIRRPWRLTY 514 + + + S+IR R TY Sbjct: 357 QVLESSIFRSVIRSRLRATY 376 [208][TOP] >UniRef100_UPI0001826C89 hypothetical protein ENTCAN_00853 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826C89 Length = 827 Score = 66.2 bits (160), Expect = 1e-09 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + ++E L P S+VG R DLR L +D + DDA+ Sbjct: 244 THEIPYVWPKAVEEQIENLREEVPEESKVG----RVDLRALPLVTIDGEDARDFDDAVYC 299 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ + MLP L Sbjct: 300 EKKRGGGWRLWVAIADVSYYVRPNTPLDNEARSRGTSVYFPSQVVPMLPEVL-------- 351 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 352 -SNGLCSLNPQVDR-LCMVCEMTISTKGRLTGYKFYEAVMSSHARLTY 397 [209][TOP] >UniRef100_Q7VN79 Ribonuclease r, virulence associated protein VacB-like protein n=1 Tax=Haemophilus ducreyi RepID=Q7VN79_HAEDU Length = 785 Score = 66.2 bits (160), Expect = 1e-09 Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAM--SWEADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295 R DLRHL +D S + DDA+ E D RLWV IADVS +++P L EA +R Sbjct: 260 RIDLRHLPLVTIDGESACDFDDAVFARKEGDQWRLWVAIADVSYYVRPKTALDLEAAKRG 319 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 ++Y P I MLP L SNG ++ + + L L TV + G L Q Sbjct: 320 NSVYFPKRVIPMLPEVL---------SNGLCSLNPQVDR-LCLVAEMTVCQSGELTRYQF 369 Query: 476 MPSLIRRPWRLTY 514 +++ RLTY Sbjct: 370 YEAVMNSHARLTY 382 [210][TOP] >UniRef100_Q7VBX3 Exoribonuclease R/ribonuclease II n=1 Tax=Prochlorococcus marinus RepID=Q7VBX3_PROMA Length = 432 Score = 66.2 bits (160), Expect = 1e-09 Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Frame = +2 Query: 128 DLRHLDSYAVDSASTFEVDDAMSWE--ADTGRLWVHIADVSAWLKPGEPLTTEALRRSCT 301 D+ +L +Y +D +T E+DDA+S E D LW+HIA+ + + L EA+ RS T Sbjct: 34 DITNLKTYTIDDPNTIEIDDAISLEKRGDKCFLWIHIANPAETISLNSALAQEAMIRSST 93 Query: 302 LYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMP 481 +YL M P EL R+ +SL V +E+ LA+S +++ G + + Sbjct: 94 IYLAESISYMFPKELIREKISL--------VQGKES--LAISLKLELSDKGDINSFSIER 143 Query: 482 SLIRRPWRLTYE 517 + I+ ++L+YE Sbjct: 144 TKIKPDYKLSYE 155 [211][TOP] >UniRef100_Q30Y52 Ribonuclease R n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30Y52_DESDG Length = 869 Score = 66.2 bits (160), Expect = 1e-09 Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 2/170 (1%) Frame = +2 Query: 11 LRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDA 190 ++ +H P F E+ + A L P A R DLRH+D +D A + DDA Sbjct: 224 VKLNHNVPTEFPQEVLDQAAAL----PDQPSEDDFAGRVDLRHVDFVTIDGAKARDFDDA 279 Query: 191 MSWEA--DTGRLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLS 364 + E D RLWV IADVS +++P L EAL R+ + Y P M P L Sbjct: 280 VYVEEQHDGWRLWVAIADVSHYVQPRTALDEEALTRANSYYFPQSVEPMFPEAL------ 333 Query: 365 LDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + ++ + A DG+ G + P++I RLTY Sbjct: 334 ---SNGLCSLNPRVPRLAMVAEVYFYA-DGTPGKSRFYPAVIESKARLTY 379 [212][TOP] >UniRef100_B7UQI8 Exoribonuclease R, RNase R n=1 Tax=Escherichia coli O127:H6 str. E2348/69 RepID=B7UQI8_ECO27 Length = 813 Score = 66.2 bits (160), Expect = 1e-09 Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + +++ GL P ++VG R DLR L +D + DDA+ Sbjct: 230 THEIPYIWPQAVEQQVAGLKEEVPEEAKVG----RVDLRDLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 [213][TOP] >UniRef100_A9KPF2 Ribonuclease R n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KPF2_CLOPH Length = 716 Score = 66.2 bits (160), Expect = 1e-09 Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDA--MSWEADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295 R DLR+L + +D ++DDA +S + D +L VHIADVS ++ PL EAL+R Sbjct: 250 RVDLRNLQTVTIDGEDAKDLDDAITLSKKGDIYQLGVHIADVSNYVTEDSPLDKEALKRG 309 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 ++YL I MLP +L+ SL+A + LALS + E G++ ++ Sbjct: 310 TSVYLVDRVIPMLPHKLSNGICSLNAGSDR----------LALSCMMEIDEKGNVVGHRI 359 Query: 476 MPSLIRRPWRLTY 514 ++I R+TY Sbjct: 360 AETVINVDRRMTY 372 [214][TOP] >UniRef100_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVE2_DICNV Length = 752 Score = 66.2 bits (160), Expect = 1e-09 Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 2/155 (1%) Frame = +2 Query: 59 EAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE--ADTGRLWVHI 232 +A + P A + R DLR+L +D S + DDA+ E + RL+V I Sbjct: 248 DAVRAQIEKMPDALQEADYVDRLDLRYLPMVTIDGISARDFDDALYAEKRGENYRLFVAI 307 Query: 233 ADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENA 412 ADVS ++KP PL EA R ++Y P + MLP +L+ SL + HV Sbjct: 308 ADVSYYVKPDSPLDEEAYARGTSVYFPDRVVPMLPEKLSNGLCSL-----NPHVDR---- 358 Query: 413 VLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 L L T+ G + + + ++I+ RLTYE Sbjct: 359 -LCLVCELTITPSGQIKNSKFHQAVIQSHARLTYE 392 [215][TOP] >UniRef100_C4URL8 Ribonuclease R n=1 Tax=Yersinia rohdei ATCC 43380 RepID=C4URL8_YERRO Length = 848 Score = 66.2 bits (160), Expect = 1e-09 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P++++ L P ++ G R DLR+L +D + DDA+ Sbjct: 230 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P L EA R ++Y P++ I MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARSRGTSVYFPSQVIPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISAQGKLSSYKFYEAVMSSHARLTY 383 [216][TOP] >UniRef100_C4SDK2 Ribonuclease R n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SDK2_YERMO Length = 878 Score = 66.2 bits (160), Expect = 1e-09 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P++++ L P ++ G R DLR+L +D + DDA+ Sbjct: 253 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVYC 308 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P L EA R ++Y P++ I MLP L Sbjct: 309 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARSRGNSVYFPSQVIPMLPEVL-------- 360 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 361 -SNGLCSLNPQVDR-LCMVCEMTISAQGKLSSSKFYEAVMSSHARLTY 406 [217][TOP] >UniRef100_B7MSJ7 Exoribonuclease R, RNase R n=3 Tax=Escherichia coli RepID=B7MSJ7_ECO81 Length = 813 Score = 66.2 bits (160), Expect = 1e-09 Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + +++ GL P ++VG R DLR L +D + DDA+ Sbjct: 230 THEIPYIWPQAVEQQVAGLKEEVPEEAKVG----RVDLRDLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 [218][TOP] >UniRef100_A1AJ84 Exoribonuclease R, RNase R n=6 Tax=Escherichia RepID=A1AJ84_ECOK1 Length = 827 Score = 66.2 bits (160), Expect = 1e-09 Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + +++ GL P ++VG R DLR L +D + DDA+ Sbjct: 244 THEIPYIWPQAVEQQVAGLKEEVPEEAKVG----RVDLRDLPLVTIDGEDARDFDDAVYC 299 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L Sbjct: 300 EKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 351 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 352 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 397 [219][TOP] >UniRef100_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W7V2_9FIRM Length = 700 Score = 66.2 bits (160), Expect = 1e-09 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR--LWVHIADVSAWLKPGEPLTTEALRRS 295 R DLR L + +D + + DDA+S E D L+VHIADVS ++K + EA +R Sbjct: 245 REDLRDLFTVTIDGRDSKDFDDAISIEKDNEDYILYVHIADVSHYVKEKSEIDKEAYQRG 304 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 + YL + MLP EL SNG ++ EN L+LS + + G + D ++ Sbjct: 305 NSTYLYNLVLPMLPEEL---------SNGICSLNPNENR-LSLSLKMKINDKGKVIDYKI 354 Query: 476 MPSLIRRPWRLTYE 517 +LIR +RL Y+ Sbjct: 355 YKALIRSNYRLVYD 368 [220][TOP] >UniRef100_A3DBQ8 Ribonuclease R n=2 Tax=Clostridium thermocellum RepID=A3DBQ8_CLOTH Length = 757 Score = 66.2 bits (160), Expect = 1e-09 Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA---DTGRLWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L +D ++DDA+S E RL VHIADVS ++K G PL EAL+R Sbjct: 246 RRDLRDLTMVTIDGEDAKDLDDAVSIERLPNGNYRLGVHIADVSYYVKEGSPLDKEALKR 305 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++YL I M P EL SNG ++ + + LA + + + G + D + Sbjct: 306 GTSVYLVDRVIPMFPKEL---------SNGICSLNPKVDR-LAFTVMMEIDKSGRVVDHE 355 Query: 473 VMPSLIRRPWRLTY 514 + S+I R+TY Sbjct: 356 IFESVINVNERMTY 369 [221][TOP] >UniRef100_A5ZEJ5 Putative uncharacterized protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZEJ5_9BACE Length = 718 Score = 66.2 bits (160), Expect = 1e-09 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 + F P P+ E A + A A E+ A R D R + ++ +D + DDA+S Sbjct: 231 AEFGLPYVYPKSVETAADKIPAEISAEEI---AKREDFRKVTTFTIDPKDAKDFDDALSI 287 Query: 200 EADTGRLW---VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 LW VHIADV+ ++K G + EA +R+ ++YL TI MLP L SL Sbjct: 288 RKLKEGLWEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL- 346 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 +EE+ LA S F + E G + D +++ ++I R TYE Sbjct: 347 ------RPNEEK---LAFSVIFNITEKGEVKDSRIVHTVINSDRRFTYE 386 [222][TOP] >UniRef100_Q4P7A2 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P7A2_USTMA Length = 1921 Score = 66.2 bits (160), Expect = 1e-09 Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 9/132 (6%) Frame = +2 Query: 149 YAVDSASTFEVDDAMSWEADTG--RLWVH--IADVSAWLKPGEPLTTEALRRSCTLYLPT 316 Y +D FE+DD +S E +G + WVH IAD +AW+KP + L A RR TLY P Sbjct: 1425 YVIDDQDAFELDDGISIETVSGTDQAWVHVHIADPTAWIKPDDELGQRAERRFQTLYFPE 1484 Query: 317 ETITMLPLELARDGLSLDASNGH----AHVSEEENAVLALSFGFTV-AEDGSLGDPQVMP 481 MLP E R G+ L A++ + +A ++F V G + D +V P Sbjct: 1485 ARWAMLPDEFVRSGIGLRAASSSGGTGTGTGADVDAQRVMTFSALVDLPSGLVQDTKVRP 1544 Query: 482 SLIRRPWRLTYE 517 +LI +Y+ Sbjct: 1545 ALIHNVETTSYD 1556 [223][TOP] >UniRef100_Q8A378 Ribonuclease R n=1 Tax=Bacteroides thetaiotaomicron RepID=Q8A378_BACTN Length = 718 Score = 65.9 bits (159), Expect = 2e-09 Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Frame = +2 Query: 80 SAGPLASEVGPS--ACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLW---VHIADVS 244 +A + +E+ P A R D R + ++ +D + DDA+S LW VHIADV+ Sbjct: 246 AADKIPAEITPEEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWEVGVHIADVT 305 Query: 245 AWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLAL 424 ++K G + EA +R+ ++YL TI MLP L SL +EE+ LA Sbjct: 306 HYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL-------RPNEEK---LAF 355 Query: 425 SFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 S F + E G + D +++ ++I R TYE Sbjct: 356 SVIFDITEKGEVRDSRIVHTVINSDRRFTYE 386 [224][TOP] >UniRef100_Q1LSR0 Ribonuclease R n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LSR0_BAUCH Length = 749 Score = 65.9 bits (159), Expect = 2e-09 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 2/167 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 S+ P + PE++E A P + R DLR L +D + DDA+ Sbjct: 232 SYALPYIWPPEVEEQAATFTKEVPEVVK----RSRVDLRMLPLVTIDGEEARDFDDAVYC 287 Query: 200 EADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDA 373 E + RLWV IADVS +++P PL EA R+ ++Y P++ I MLP L+ SL+ Sbjct: 288 EKKSSGWRLWVAIADVSYYVRPHTPLDNEARNRATSIYFPSQVIPMLPEILSHSLCSLNP 347 Query: 374 SNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 L + T++ G L + ++I RLTY Sbjct: 348 QVDR----------LCMVCEMTISAQGKLSSYKFYEAIINSKARLTY 384 [225][TOP] >UniRef100_B5FRN5 Ribonuclease R n=1 Tax=Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RepID=B5FRN5_SALDC Length = 812 Score = 65.9 bits (159), Expect = 2e-09 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + +++ GL P ++VG R DLR L +D + DDA+ Sbjct: 230 THEIPYIWPQAVEQQVTGLKEEVPEEAKVG----RVDLRDLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISAKGRLTGYKFYEAVMSSHARLTY 383 [226][TOP] >UniRef100_B2VCW6 Ribonuclease R n=1 Tax=Erwinia tasmaniensis RepID=B2VCW6_ERWT9 Length = 827 Score = 65.9 bits (159), Expect = 2e-09 Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 5/146 (3%) Frame = +2 Query: 92 LASEVGPSACR--TDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLK 256 L+ EV A R DLR L +D + DDA+ E G RLWV IADVS +++ Sbjct: 262 LSEEVPEEATRGRVDLRDLPLVTIDGEDARDFDDAVFCERKRGGGWRLWVAIADVSYYVR 321 Query: 257 PGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGF 436 PG PL EA+ R ++Y P++ + MLP L SNG ++ E + L + Sbjct: 322 PGTPLDDEAINRGTSVYFPSQVVPMLPEVL---------SNGLCSLNPEVDR-LCMVCEM 371 Query: 437 TVAEDGSLGDPQVMPSLIRRPWRLTY 514 T++ G L + +++ RLTY Sbjct: 372 TISATGKLTGYKHYEAVMNSFARLTY 397 [227][TOP] >UniRef100_B2UY13 Ribonuclease R n=1 Tax=Clostridium botulinum E3 str. Alaska E43 RepID=B2UY13_CLOBA Length = 746 Score = 65.9 bits (159), Expect = 2e-09 Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA-DTG--RLWVHIADVSAWLKPGEPLTTEALRR 292 R DLR+L +D ++DDA+S E D G +L VHIADV+ +++ L EAL+R Sbjct: 252 RVDLRNLRMVTIDGEDAKDLDDAVSIEKLDDGNFKLGVHIADVTHYVRENNILDKEALKR 311 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 + ++YL I MLP +L SNG ++ + + LALS + G++ D + Sbjct: 312 ATSVYLIDRVIPMLPKQL---------SNGICSLNPKVDR-LALSCFMVINNKGTVVDHE 361 Query: 473 VMPSLIRRPWRLTY 514 +M S+I+ R+TY Sbjct: 362 IMESVIKTSERMTY 375 [228][TOP] >UniRef100_B1XXK0 Ribonuclease R n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XXK0_LEPCP Length = 733 Score = 65.9 bits (159), Expect = 2e-09 Identities = 57/169 (33%), Positives = 77/169 (45%), Gaps = 8/169 (4%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSAC--RTDLRHLDSYAVDSASTFEVDDAMSWE- 202 P FSPE L G L V + C R DLR + +D + DDA+ E Sbjct: 153 PHRFSPET------LAQTGKLPDRVRAADCKGRIDLRDVPLVTIDGEDARDFDDAVYCEP 206 Query: 203 ADTGR-----LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367 A GR L V IADVS ++KPGEPL +A R+ ++Y P I MLP +L Sbjct: 207 AKVGRTKGWRLLVAIADVSHYVKPGEPLDDDAYERATSVYFPRRVIPMLPEKL------- 259 Query: 368 DASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ +E L++ V G + Q P++I R TY Sbjct: 260 --SNGLCSLNPDEER-LSMVCDMLVNASGEVHAYQFYPAVILSHARFTY 305 [229][TOP] >UniRef100_A3D8Q9 RNAse R n=1 Tax=Shewanella baltica OS155 RepID=A3D8Q9_SHEB5 Length = 807 Score = 65.9 bits (159), Expect = 2e-09 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 3/164 (1%) Frame = +2 Query: 32 PPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADT 211 P T+SP +++ + A +VG R DLRHL +D + DDA+ E Sbjct: 234 PHTWSPVIEKKLRRIPDEVTDADKVG----RVDLRHLPLVTIDGEDARDFDDAVYAEKKA 289 Query: 212 G---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNG 382 G RLWV IADVS +++ L EA R ++Y P++ I MLP +++ SL Sbjct: 290 GGGWRLWVAIADVSYYVRTDSALDIEARARGNSVYFPSQVIPMLPEKISNGLCSL----- 344 Query: 383 HAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 + HV L + TV+ G L + P+++ R TY Sbjct: 345 NPHVDR-----LCMVAEMTVSAKGKLSGYKFYPAVMYSHARFTY 383 [230][TOP] >UniRef100_C9QCX5 Ribonuclease R n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QCX5_VIBOR Length = 819 Score = 65.9 bits (159), Expect = 2e-09 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + + + GL P ++VG R DLR L +D + DDA+ Sbjct: 237 THQIPHEWPEAVDKQIEGLGEEVPEEAKVG----RVDLRDLPLVTIDGEDARDFDDAVYC 292 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P L EA+ R ++Y P++ + MLP L Sbjct: 293 EKKKGGGWRLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+E G L + +++ RLTY Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTVSETGKLSGYKHYEAVMNSHARLTY 390 [231][TOP] >UniRef100_C9P040 Ribonuclease R n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P040_9VIBR Length = 821 Score = 65.9 bits (159), Expect = 2e-09 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + E+ + GL P ++ G R DLR L +D + DDA+ Sbjct: 237 THQIPHEWPEEVDKQIEGLGEEVPEEAKQG----RVDLRELPLVTIDGEDARDFDDAVYC 292 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 EA RLWV IADVS +++P L EA+ R ++Y P++ + MLP L Sbjct: 293 EAKKSGGWRLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVL-------- 344 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++E G L + +++ RLTY Sbjct: 345 -SNGLCSLNPQVDR-LCMVCEMTISESGKLSGYKHYEAVMNSHARLTY 390 [232][TOP] >UniRef100_C7HU91 Ribonuclease R n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HU91_9FIRM Length = 706 Score = 65.9 bits (159), Expect = 2e-09 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 2/134 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR--LWVHIADVSAWLKPGEPLTTEALRRS 295 R DLR L + +D + + DDA+S E D L+VHIADVS ++K + EA +R Sbjct: 245 RKDLRDLFTVTIDGRDSKDFDDAISIEKDEEDFILYVHIADVSHYVKENSEIDKEAYQRG 304 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 + YL + MLP EL SNG ++ EN LALS + + G + D ++ Sbjct: 305 NSTYLYNIVLPMLPEEL---------SNGICSLNPNENR-LALSLKMRINKLGKVVDYKI 354 Query: 476 MPSLIRRPWRLTYE 517 S+I+ +RL Y+ Sbjct: 355 YKSIIKSNYRLVYD 368 [233][TOP] >UniRef100_C6IHK3 Ribonuclease R n=1 Tax=Bacteroides sp. 1_1_6 RepID=C6IHK3_9BACE Length = 718 Score = 65.9 bits (159), Expect = 2e-09 Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Frame = +2 Query: 80 SAGPLASEVGPS--ACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLW---VHIADVS 244 +A + +E+ P A R D R + ++ +D + DDA+S LW VHIADV+ Sbjct: 246 AADKIPAEITPEEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWEVGVHIADVT 305 Query: 245 AWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLAL 424 ++K G + EA +R+ ++YL TI MLP L SL +EE+ LA Sbjct: 306 HYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL-------RPNEEK---LAF 355 Query: 425 SFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 S F + E G + D +++ ++I R TYE Sbjct: 356 SVIFDITEKGEVKDSRIVHTVINSDRRFTYE 386 [234][TOP] >UniRef100_C5UY77 Ribonuclease R n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UY77_CLOBO Length = 746 Score = 65.9 bits (159), Expect = 2e-09 Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEA-DTG--RLWVHIADVSAWLKPGEPLTTEALRR 292 R DLR+L +D ++DDA+S E D G +L VHIADV+ +++ L EAL+R Sbjct: 252 RVDLRNLRMVTIDGEDAKDLDDAVSIEKLDDGSFKLGVHIADVTHYVRENNILDKEALKR 311 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 + ++YL I MLP +L SNG ++ + + LALS + G++ D + Sbjct: 312 ATSVYLIDRVIPMLPKQL---------SNGICSLNPKVDR-LALSCFMVINNKGTVVDHE 361 Query: 473 VMPSLIRRPWRLTY 514 +M S+I+ R+TY Sbjct: 362 IMESVIKTSERMTY 375 [235][TOP] >UniRef100_C4U5E8 Ribonuclease R n=1 Tax=Yersinia aldovae ATCC 35236 RepID=C4U5E8_YERAL Length = 850 Score = 65.9 bits (159), Expect = 2e-09 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P++++ L P ++ G R DLR+L +D + DDA+ Sbjct: 230 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVHC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P L EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARSRGNSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSQGKLSSYKFYEAVMSSHARLTY 383 [236][TOP] >UniRef100_C4T7W1 Ribonuclease R n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T7W1_YERIN Length = 824 Score = 65.9 bits (159), Expect = 2e-09 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P++++ L P ++ G R DLR+L +D + DDA+ Sbjct: 206 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVYC 261 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P L EA R ++Y P++ + MLP L Sbjct: 262 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARNRGNSVYFPSQVVPMLPEVL-------- 313 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 314 -SNGLCSLNPQVDR-LCMVCEMTISSQGKLSSYKFYEAVMSSHARLTY 359 [237][TOP] >UniRef100_C0GFC0 Ribonuclease R n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFC0_9FIRM Length = 709 Score = 65.9 bits (159), Expect = 2e-09 Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSW-EADTGR--LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L +D A ++DDA+S + D G L VHIADV ++K G L EA R Sbjct: 245 RMDLRDLPMVTIDGADAKDLDDAVSLHQKDNGNWELGVHIADVGHYVKEGTALDKEAFHR 304 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++YL I MLP EL+ D SL+ LA+S + G + Sbjct: 305 GTSIYLVDRVIPMLPPELSNDLCSLNPQVDR----------LAMSVFMELNHQGKVVSHD 354 Query: 473 VMPSLIRRPWRLTYE 517 PS+IR R+TY+ Sbjct: 355 FGPSVIRTQERMTYD 369 [238][TOP] >UniRef100_C0FBQ4 Putative uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=C0FBQ4_9CLOT Length = 757 Score = 65.9 bits (159), Expect = 2e-09 Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWE--ADTGRLWVHIADVSAWLKPGEPLTTEALRRS 295 R DLR L + +D ++DDA+S E D RL VHIADVS +++ L EALRRS Sbjct: 296 RKDLRGLLTVTIDGEEAKDLDDAISIERAGDGYRLGVHIADVSHYVREYTALDAEALRRS 355 Query: 296 CTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQV 475 ++YL I MLP L SNG ++E E+ L LS + G++ ++ Sbjct: 356 TSVYLVDRVIPMLPHRL---------SNGICSLNEGEDR-LTLSCLMDIDSQGNVVGHEI 405 Query: 476 MPSLIRRPWRLTY 514 ++IR R+TY Sbjct: 406 AETVIRSDRRMTY 418 [239][TOP] >UniRef100_B1EH98 Ribonuclease R n=1 Tax=Escherichia albertii TW07627 RepID=B1EH98_9ESCH Length = 813 Score = 65.9 bits (159), Expect = 2e-09 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + +++ GL P ++ G R DLR L +D + DDA+ Sbjct: 230 THEIPHIWPQAVEQQVTGLKEEVPEEAKAG----RVDLRDLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 [240][TOP] >UniRef100_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RRW9_9CLOT Length = 748 Score = 65.9 bits (159), Expect = 2e-09 Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 7/160 (4%) Frame = +2 Query: 56 QEAANGLLSAGPLASEV---GPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGR--- 217 +E +G G L S G A R DLR L + +D ++DDA++ G+ Sbjct: 251 EETWDGPYGIGDLTSPADWTGDLAGRLDLRGLRTVTIDGEDAKDLDDAVTL-CRNGQGGY 309 Query: 218 -LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHV 394 L VHIADVS ++K G PL EAL+R ++YL I MLP +L+ SL+A Sbjct: 310 ILGVHIADVSHYVKEGRPLDKEALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGTDR--- 366 Query: 395 SEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 LALS + + G++ D ++ ++I R+TY Sbjct: 367 -------LALSCIMELDDQGNVLDHKIAETVIHVDRRMTY 399 [241][TOP] >UniRef100_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica RepID=Q7UFR0_RHOBA Length = 764 Score = 65.5 bits (158), Expect = 2e-09 Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 2/174 (1%) Frame = +2 Query: 2 SLELRASHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEV 181 +L + + P FS ++ + A A +V P+ R DL + + +D + Sbjct: 234 TLTIMRQYALPDEFSEDVLDEARE--QADAFDDDVVPTD-RKDLTDMLTITIDPFDARDF 290 Query: 182 DDAMSWEADTGR--LWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARD 355 DDA+S + + GR LWVHIADVS ++ PG L EA RR ++YLP I M+P Sbjct: 291 DDAISLQREDGRWRLWVHIADVSHFVPPGGKLDVEARRRGTSVYLPDRVIPMIP------ 344 Query: 356 GLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 + + H + E L + + +D ++ +V + IR R YE Sbjct: 345 ----EIISNHLASLQPERMRLVKTVEIEMLDDLTITHSEVHNAAIRSDKRFNYE 394 [242][TOP] >UniRef100_Q253K0 Ribonuclease R n=1 Tax=Chlamydophila felis Fe/C-56 RepID=Q253K0_CHLFF Length = 676 Score = 65.5 bits (158), Expect = 2e-09 Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 3/135 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTGR---LWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L + +DS + + DDA+S D L VHIADVS ++ P L EA +R Sbjct: 206 RKDLRDLLCFTIDSITAKDFDDAVSLTYDHNDNYILGVHIADVSHYVTPHSALDQEASKR 265 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P + I MLP L+ + SL + LA+S T + G L + + Sbjct: 266 CNSIYFPGKVIPMLPPALSDNLCSLKPNVDR----------LAVSVFMTFTKSGHLSNYE 315 Query: 473 VMPSLIRRPWRLTYE 517 + S+IR +R+TY+ Sbjct: 316 IFRSVIRSKYRMTYD 330 [243][TOP] >UniRef100_C4K3C1 RNase R, 3'-5' exoribonuclease n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3C1_HAMD5 Length = 782 Score = 65.5 bits (158), Expect = 2e-09 Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P +S E+++ L P ++ G R DLR L +D + DDA+ Sbjct: 230 THEIPYLWSDEIKKEIGQLKEEVPEEAKQG----RVDLRALPLMTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P L EA RS ++Y P++ I MLP L+ SL+ Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPNTALDDEAKNRSNSVYFPSQVIPMLPEILSNGLCSLN 345 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 S L++ T++ G L + + I+ RLTY Sbjct: 346 PSVDR----------LSMVCEMTLSAQGKLSSYRFYEATIKSHARLTY 383 [244][TOP] >UniRef100_Q3RAQ3 3'-5' exoribonuclease, VacB and RNase II n=1 Tax=Xylella fastidiosa subsp. sandyi Ann-1 RepID=Q3RAQ3_XYLFA Length = 836 Score = 65.5 bits (158), Expect = 2e-09 Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Frame = +2 Query: 23 HFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWE 202 H P F E+ +AA +A PL G R DLR L +D + DDA+ E Sbjct: 318 HQLPHVFPQEVLDAA----AAVPLTVTPGMLGGRVDLRALPLVTIDGEDAKDFDDAVYCE 373 Query: 203 ADTG--RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSL 367 ++ G RL V IADVS +++PG PL EAL R+ ++Y P + MLP L+ SL Sbjct: 374 SNRGGVRLVVAIADVSHYVRPGTPLDEEALTRATSVYFPGFVVPMLPETLSNGICSL 430 [245][TOP] >UniRef100_D0FNU4 Ribonuclease R n=1 Tax=Erwinia pyrifoliae RepID=D0FNU4_ERWPY Length = 813 Score = 65.5 bits (158), Expect = 2e-09 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 3/134 (2%) Frame = +2 Query: 122 RTDLRHLDSYAVDSASTFEVDDAMSWEADTG---RLWVHIADVSAWLKPGEPLTTEALRR 292 R DLR L +D + DDA+ E G RLWV IADVS +++PG PL EA+ R Sbjct: 260 RVDLRDLPLVTIDGEDARDFDDAVFCERKRGGGWRLWVAIADVSYYVRPGTPLDDEAVNR 319 Query: 293 SCTLYLPTETITMLPLELARDGLSLDASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQ 472 ++Y P++ + MLP L SNG ++ E + L + T++ G L + Sbjct: 320 GTSVYFPSQVVPMLPEVL---------SNGLCSLNPEVDR-LCMVCEMTISSTGKLTGYK 369 Query: 473 VMPSLIRRPWRLTY 514 +++ RLTY Sbjct: 370 HYEAVMNSFARLTY 383 [246][TOP] >UniRef100_C9QTP6 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Escherichia coli DH1 RepID=C9QTP6_ECOLX Length = 813 Score = 65.5 bits (158), Expect = 2e-09 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + +++ GL P ++ G R DLR L +D + DDA+ Sbjct: 230 THEIPYIWPQAVEQQVAGLKEEVPEEAKAG----RVDLRDLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 [247][TOP] >UniRef100_C7RM85 Ribonuclease R n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RM85_9PROT Length = 723 Score = 65.5 bits (158), Expect = 2e-09 Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 3/159 (1%) Frame = +2 Query: 50 ELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSWEADTGRLW-- 223 E AA +A P S RTDLR L +D + + DDA+ E TGR W Sbjct: 244 EFSSAALAEAAALPDGLTSSESEGRTDLRALPLVTIDGETARDFDDAVFAEK-TGRGWRL 302 Query: 224 -VHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLDASNGHAHVSE 400 V IADVS +++PG L E L+R ++Y P I MLP +L SNG ++ Sbjct: 303 VVAIADVSHYVRPGMALDREGLQRGNSVYFPRRVIPMLPEKL---------SNGLCSLNP 353 Query: 401 EENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTYE 517 + + LA+ + G + D + P++ R RLTY+ Sbjct: 354 DVDR-LAMVCDMNIDAGGEIVDYRFYPAVFRSQARLTYD 391 [248][TOP] >UniRef100_C4SLD1 Ribonuclease R n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SLD1_YERFR Length = 505 Score = 65.5 bits (158), Expect = 2e-09 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P++++ L P ++ G R DLR+L +D + DDA+ Sbjct: 230 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P L EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARSRGNSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSQGKLSSYKFYEAVMSSHARLTY 383 [249][TOP] >UniRef100_C4S6W6 Ribonuclease R n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4S6W6_YERBE Length = 854 Score = 65.5 bits (158), Expect = 2e-09 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P T+ P++++ L P ++ G R DLR+L +D + DDA+ Sbjct: 230 THEIPHTWPPQVEKQVADLKEQVPEEAKKG----RVDLRNLPLVTIDGEDARDFDDAVYC 285 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P L EA R ++Y P++ + MLP L Sbjct: 286 EKKRGGGWRLWVAIADVSYYVRPRTALDDEARSRGNSVYFPSQVVPMLPEVL-------- 337 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + T++ G L + +++ RLTY Sbjct: 338 -SNGLCSLNPQVDR-LCMVCEMTISSQGKLSSYKFYEAVMSSHARLTY 383 [250][TOP] >UniRef100_C1NB72 VacB n=1 Tax=Escherichia sp. 1_1_43 RepID=C1NB72_9ESCH Length = 800 Score = 65.5 bits (158), Expect = 2e-09 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 3/168 (1%) Frame = +2 Query: 20 SHFYPPTFSPELQEAANGLLSAGPLASEVGPSACRTDLRHLDSYAVDSASTFEVDDAMSW 199 +H P + +++ GL P ++ G R DLR L +D + DDA+ Sbjct: 244 THEIPYIWPQAVEQQVAGLKEEVPEEAKAG----RVDLRDLPLVTIDGEDARDFDDAVYC 299 Query: 200 EADTG---RLWVHIADVSAWLKPGEPLTTEALRRSCTLYLPTETITMLPLELARDGLSLD 370 E G RLWV IADVS +++P PL EA R ++Y P++ I MLP L Sbjct: 300 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL-------- 351 Query: 371 ASNGHAHVSEEENAVLALSFGFTVAEDGSLGDPQVMPSLIRRPWRLTY 514 SNG ++ + + L + TV+ G L + +++ RLTY Sbjct: 352 -SNGLCSLNPQVDR-LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 397