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[1][TOP] >UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis RepID=O04142_PORYE Length = 1685 Score = 183 bits (464), Expect = 6e-45 Identities = 95/95 (100%), Positives = 95/95 (100%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ Sbjct: 914 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 973 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL Sbjct: 974 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 1008 [2][TOP] >UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera RepID=O09451_9FLOR Length = 1732 Score = 79.0 bits (193), Expect = 2e-13 Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 3/98 (3%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA---LKELSE 173 SDL P ++++GV +LL RTRVL ++A ++ A E + P DE + L + Sbjct: 897 SDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPGMEEDDEGNPIDEKPTMVDPLMK 956 Query: 174 TAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 AQ NATLLFQ+H+R+ LA K ++ HRLT KAF WLL Sbjct: 957 EAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLWLL 994 [3][TOP] >UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia uvarioides RepID=Q9AXN1_9FLOR Length = 1712 Score = 63.9 bits (154), Expect = 5e-09 Identities = 36/95 (37%), Positives = 57/95 (60%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SDL+P ++ +G+++LL RTRV+ +D + + + + +G + A ET Q Sbjct: 898 SDLTPVQVWKGIKMLLKRTRVVEIGDDQDDEDVDDGVTDENGEMIDRKPVADPLTLET-Q 956 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NAT++FQ+HVR+ LA K V+ HRL AF W+L Sbjct: 957 ENATMIFQIHVRSMLACKQVMVRHRLDINAFLWIL 991 [4][TOP] >UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata RepID=Q9AXN0_9RHOD Length = 1746 Score = 62.8 bits (151), Expect = 1e-08 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 13/108 (12%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLT-------------SDEDAEVDAIAREMLPPDGSASGP 143 SDL+P I++GV++LL R V+ D+ AEVD Sbjct: 973 SDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGDQVAEVDT--------------- 1017 Query: 144 QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 + ++L+ AQ NATLL+ +H+RA LASKV+L E+RL +KAF LL Sbjct: 1018 -NSVSRQLAVEAQENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLL 1064 [5][TOP] >UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae RepID=Q84KP6_CYAME Length = 1819 Score = 62.8 bits (151), Expect = 1e-08 Identities = 40/95 (42%), Positives = 47/95 (49%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SDL P +I++GV +LL R V+ D+ ELS AQ Sbjct: 993 SDLHPRQIIQGVRVLLQRCVVVPGDD---------------------------ELSREAQ 1025 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NA LLF HVRA LA+K VL HRL KAF WLL Sbjct: 1026 RNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLL 1060 [6][TOP] >UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019270E9 Length = 2014 Score = 58.2 bits (139), Expect = 3e-07 Identities = 34/95 (35%), Positives = 51/95 (53%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 +DLSP K++ ++ L R V+ ++ +LS+ AQ Sbjct: 1002 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1034 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL Sbjct: 1035 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLL 1069 [7][TOP] >UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 isoform 1 n=1 Tax=Hydra magnipapillata RepID=UPI00019270BB Length = 2041 Score = 58.2 bits (139), Expect = 3e-07 Identities = 34/95 (35%), Positives = 51/95 (53%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 +DLSP K++ ++ L R V+ ++ +LS+ AQ Sbjct: 1003 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1035 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL Sbjct: 1036 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLL 1070 [8][TOP] >UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5Y387_SORBI Length = 1874 Score = 57.0 bits (136), Expect = 6e-07 Identities = 36/95 (37%), Positives = 50/95 (52%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SD+ P +IV ++ L R +V+ D DAI+ E AQ Sbjct: 998 SDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE----------------------AQ 1030 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NATL F +H+RA+ ASK VL E+RLTR+AF W++ Sbjct: 1031 KNATLFFNIHLRATFASKRVLREYRLTREAFEWII 1065 [9][TOP] >UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium replicatum RepID=Q2PYS3_9FUNG Length = 981 Score = 56.6 bits (135), Expect = 8e-07 Identities = 36/95 (37%), Positives = 49/95 (51%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SDL P I++ V+ LL RT V+ + ELS AQ Sbjct: 888 SDLHPRHIIKSVQELLERTVVIRGKD---------------------------ELSVEAQ 920 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NATLLFQ+ VR++LA++ VL E RL R+AF W++ Sbjct: 921 ANATLLFQILVRSTLATRRVLEEFRLDRRAFDWII 955 [10][TOP] >UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa RepID=Q2PYR6_9FUNG Length = 1013 Score = 56.6 bits (135), Expect = 8e-07 Identities = 27/42 (64%), Positives = 34/42 (80%) Frame = +3 Query: 162 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 +LS AQ NATLLFQ+H+RASLA+K V+ E LT++AF WLL Sbjct: 946 QLSVEAQTNATLLFQIHLRASLATKRVIEEFHLTKEAFDWLL 987 [11][TOP] >UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum RepID=Q30BD9_9EUKA Length = 1852 Score = 56.2 bits (134), Expect = 1e-06 Identities = 36/95 (37%), Positives = 48/95 (50%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SDL P I++GV LL + V+ ++ V+A Q Sbjct: 989 SDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEA---------------------------Q 1021 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NAT+LFQ+ VR+ LASK VL+E+RLT AF WLL Sbjct: 1022 ANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLL 1056 [12][TOP] >UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum RepID=Q1ACV3_ACEPM Length = 240 Score = 55.1 bits (131), Expect = 2e-06 Identities = 33/95 (34%), Positives = 47/95 (49%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SD+ P ++V ++ L R +V+ D+ LS AQ Sbjct: 150 SDMHPMEVVEAIDKLQERLKVVPGDD---------------------------ALSVEAQ 182 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NATL F + +R++ ASK VL EHRLTR+AF WL+ Sbjct: 183 KNATLFFNILLRSTFASKRVLQEHRLTREAFEWLI 217 [13][TOP] >UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1 Tax=Aphrocallistes vastus RepID=Q2N108_9METZ Length = 254 Score = 55.1 bits (131), Expect = 2e-06 Identities = 34/95 (35%), Positives = 49/95 (51%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SDL+P K++ GVE L + V+ ED+ +S+ AQ Sbjct: 159 SDLNPLKVIEGVEELCKKL-VIVDGEDS--------------------------ISKEAQ 191 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NATLL +H+R++LA K V+ EH L+ +AF WLL Sbjct: 192 YNATLLINIHLRSTLACKRVMEEHHLSSQAFDWLL 226 [14][TOP] >UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis RepID=Q4P7Q0_USTMA Length = 1774 Score = 55.1 bits (131), Expect = 2e-06 Identities = 31/95 (32%), Positives = 53/95 (55%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 +DLSP++++ G+ +L R V+ D D I+RE AQ Sbjct: 991 TDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE----------------------AQ 1023 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 +NATLLF++H+R+ L SK+V+ +H + ++A+ W+L Sbjct: 1024 MNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWIL 1058 [15][TOP] >UniRef100_Q1ACU5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dionaea muscipula RepID=Q1ACU5_DIOMU Length = 240 Score = 54.3 bits (129), Expect = 4e-06 Identities = 34/95 (35%), Positives = 48/95 (50%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SDL P +IV V+ L R RV+ D+ LS+ AQ Sbjct: 150 SDLMPMEIVEAVDKLQERLRVVPGDD---------------------------HLSDEAQ 182 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NATL F + +R++LA K VL E+RL+R+AF W++ Sbjct: 183 RNATLFFNILLRSTLACKRVLQEYRLSREAFEWVI 217 [16][TOP] >UniRef100_Q71ET3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Psilotum nudum RepID=Q71ET3_PSINU Length = 1013 Score = 53.9 bits (128), Expect = 5e-06 Identities = 32/95 (33%), Positives = 50/95 (52%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SD+ P +IV V+ L R +V+ ++ E+S+ AQ Sbjct: 920 SDMHPMEIVEAVDKLQERLKVVPGED---------------------------EISKEAQ 952 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NATL F + +R++LASK VL E+RLT++AF W++ Sbjct: 953 KNATLFFNILLRSTLASKRVLKEYRLTKEAFEWVI 987 [17][TOP] >UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa RepID=Q30BD8_CYAPA Length = 1000 Score = 53.9 bits (128), Expect = 5e-06 Identities = 36/95 (37%), Positives = 48/95 (50%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SDL P I++GVELL + V+ ++ LS AQ Sbjct: 900 SDLRPDIILQGVELLSTQLVVIAGEDT---------------------------LSREAQ 932 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NAT LF +H+RA+LA+K VLSE+RL+ A WLL Sbjct: 933 ENATRLFNIHLRATLATKRVLSEYRLSAAALEWLL 967 [18][TOP] >UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe tomentosa RepID=Q1ACT8_9MAGN Length = 240 Score = 53.1 bits (126), Expect = 9e-06 Identities = 31/95 (32%), Positives = 49/95 (51%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 SD+ P +IV ++ L R +V+ ++ ++A Q Sbjct: 150 SDMHPMEIVEAIDKLQERLKVVPGEDSLSIEA---------------------------Q 182 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NATLLF + +R++ ASK VLSE+RLTR+AF W++ Sbjct: 183 KNATLLFNILLRSTFASKRVLSEYRLTREAFEWVV 217 [19][TOP] >UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri RepID=Q9U5F6_EPTBU Length = 595 Score = 53.1 bits (126), Expect = 9e-06 Identities = 31/95 (32%), Positives = 47/95 (49%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 +DL+P ++V GV L + +++ D+ +S AQ Sbjct: 501 TDLNPLRVVEGVNDLTQKLQIVKGDDP---------------------------ISRQAQ 533 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NATLLF HVRA+L ++ + EHRL+ +AF WLL Sbjct: 534 QNATLLFNCHVRATLCTRRLAEEHRLSSEAFEWLL 568 [20][TOP] >UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis macrandra RepID=Q9C428_9FUNG Length = 1603 Score = 53.1 bits (126), Expect = 9e-06 Identities = 37/95 (38%), Positives = 46/95 (48%) Frame = +3 Query: 3 SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182 S+L P +IVR V LL R V+T ++ LS AQ Sbjct: 925 SNLRPEEIVRDVNDLLSRCIVITGEDG---------------------------LSTMAQ 957 Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287 NATLLF + VR LA+K V +EHRL R AF WL+ Sbjct: 958 HNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLI 992