AU192040 ( PFL024h08_r )

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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
            RepID=O04142_PORYE
          Length = 1685

 Score =  183 bits (464), Expect = 6e-45
 Identities = 95/95 (100%), Positives = 95/95 (100%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ
Sbjct: 914  SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 973

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
            LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL
Sbjct: 974  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 1008

[2][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
            RepID=O09451_9FLOR
          Length = 1732

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEA---LKELSE 173
            SDL P ++++GV +LL RTRVL   ++A ++  A E    +     P DE    +  L +
Sbjct: 897  SDLKPDQVLKGVSMLLKRTRVLVLGDEAALENAALEPGMEEDDEGNPIDEKPTMVDPLMK 956

Query: 174  TAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
             AQ NATLLFQ+H+R+ LA K ++  HRLT KAF WLL
Sbjct: 957  EAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLWLL 994

[3][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
            uvarioides RepID=Q9AXN1_9FLOR
          Length = 1712

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 36/95 (37%), Positives = 57/95 (60%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            SDL+P ++ +G+++LL RTRV+   +D + + +   +   +G     +  A     ET Q
Sbjct: 898  SDLTPVQVWKGIKMLLKRTRVVEIGDDQDDEDVDDGVTDENGEMIDRKPVADPLTLET-Q 956

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
             NAT++FQ+HVR+ LA K V+  HRL   AF W+L
Sbjct: 957  ENATMIFQIHVRSMLACKQVMVRHRLDINAFLWIL 991

[4][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLT-------------SDEDAEVDAIAREMLPPDGSASGP 143
            SDL+P  I++GV++LL R  V+               D+ AEVD                
Sbjct: 973  SDLNPRDILKGVQILLSRCNVVALPPKSIKLLDEGDGDQVAEVDT--------------- 1017

Query: 144  QDEALKELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
             +   ++L+  AQ NATLL+ +H+RA LASKV+L E+RL +KAF  LL
Sbjct: 1018 -NSVSRQLAVEAQENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLL 1064

[5][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
            RepID=Q84KP6_CYAME
          Length = 1819

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 40/95 (42%), Positives = 47/95 (49%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            SDL P +I++GV +LL R  V+  D+                           ELS  AQ
Sbjct: 993  SDLHPRQIIQGVRVLLQRCVVVPGDD---------------------------ELSREAQ 1025

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
             NA LLF  HVRA LA+K VL  HRL  KAF WLL
Sbjct: 1026 RNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLL 1060

[6][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 34/95 (35%), Positives = 51/95 (53%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            +DLSP K++  ++ L  R  V+  ++                           +LS+ AQ
Sbjct: 1002 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1034

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
            LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL
Sbjct: 1035 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLL 1069

[7][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 34/95 (35%), Positives = 51/95 (53%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            +DLSP K++  ++ L  R  V+  ++                           +LS+ AQ
Sbjct: 1003 TDLSPLKVINDIKDLTKRLLVVKGED---------------------------KLSKEAQ 1035

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
            LNAT+LFQ+H+R++L SK V+ E RLT +AF WLL
Sbjct: 1036 LNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLL 1070

[8][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5Y387_SORBI
          Length = 1874

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 36/95 (37%), Positives = 50/95 (52%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            SD+ P +IV  ++ L  R +V+  D     DAI+ E                      AQ
Sbjct: 998  SDMHPIEIVEAIDKLQERLKVVPGD-----DAISIE----------------------AQ 1030

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
             NATL F +H+RA+ ASK VL E+RLTR+AF W++
Sbjct: 1031 KNATLFFNIHLRATFASKRVLREYRLTREAFEWII 1065

[9][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
            replicatum RepID=Q2PYS3_9FUNG
          Length = 981

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 36/95 (37%), Positives = 49/95 (51%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            SDL P  I++ V+ LL RT V+   +                           ELS  AQ
Sbjct: 888  SDLHPRHIIKSVQELLERTVVIRGKD---------------------------ELSVEAQ 920

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
             NATLLFQ+ VR++LA++ VL E RL R+AF W++
Sbjct: 921  ANATLLFQILVRSTLATRRVLEEFRLDRRAFDWII 955

[10][TOP]
>UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa
            RepID=Q2PYR6_9FUNG
          Length = 1013

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +3

Query: 162  ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
            +LS  AQ NATLLFQ+H+RASLA+K V+ E  LT++AF WLL
Sbjct: 946  QLSVEAQTNATLLFQIHLRASLATKRVIEEFHLTKEAFDWLL 987

[11][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 36/95 (37%), Positives = 48/95 (50%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            SDL P  I++GV LL  +  V+  ++   V+A                           Q
Sbjct: 989  SDLDPVDIIKGVNLLTKQLVVIPGEDPLSVEA---------------------------Q 1021

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
             NAT+LFQ+ VR+ LASK VL+E+RLT  AF WLL
Sbjct: 1022 ANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLL 1056

[12][TOP]
>UniRef100_Q1ACV3 RNA polymerase II largest subunit (Fragment) n=1 Tax=Acer palmatum
           RepID=Q1ACV3_ACEPM
          Length = 240

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 33/95 (34%), Positives = 47/95 (49%)
 Frame = +3

Query: 3   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
           SD+ P ++V  ++ L  R +V+  D+                            LS  AQ
Sbjct: 150 SDMHPMEVVEAIDKLQERLKVVPGDD---------------------------ALSVEAQ 182

Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
            NATL F + +R++ ASK VL EHRLTR+AF WL+
Sbjct: 183 KNATLFFNILLRSTFASKRVLQEHRLTREAFEWLI 217

[13][TOP]
>UniRef100_Q2N108 DNA-directed RNA polymerase II largest subunit (Fragment) n=1
           Tax=Aphrocallistes vastus RepID=Q2N108_9METZ
          Length = 254

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 34/95 (35%), Positives = 49/95 (51%)
 Frame = +3

Query: 3   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
           SDL+P K++ GVE L  +  V+   ED+                          +S+ AQ
Sbjct: 159 SDLNPLKVIEGVEELCKKL-VIVDGEDS--------------------------ISKEAQ 191

Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
            NATLL  +H+R++LA K V+ EH L+ +AF WLL
Sbjct: 192 YNATLLINIHLRSTLACKRVMEEHHLSSQAFDWLL 226

[14][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 31/95 (32%), Positives = 53/95 (55%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            +DLSP++++ G+  +L R  V+  D     D I+RE                      AQ
Sbjct: 991  TDLSPAEVIIGLRNVLDRLIVIRGD-----DPISRE----------------------AQ 1023

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
            +NATLLF++H+R+ L SK+V+ +H + ++A+ W+L
Sbjct: 1024 MNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWIL 1058

[15][TOP]
>UniRef100_Q1ACU5 RNA polymerase II largest subunit (Fragment) n=1 Tax=Dionaea
           muscipula RepID=Q1ACU5_DIOMU
          Length = 240

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 34/95 (35%), Positives = 48/95 (50%)
 Frame = +3

Query: 3   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
           SDL P +IV  V+ L  R RV+  D+                            LS+ AQ
Sbjct: 150 SDLMPMEIVEAVDKLQERLRVVPGDD---------------------------HLSDEAQ 182

Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
            NATL F + +R++LA K VL E+RL+R+AF W++
Sbjct: 183 RNATLFFNILLRSTLACKRVLQEYRLSREAFEWVI 217

[16][TOP]
>UniRef100_Q71ET3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Psilotum nudum
            RepID=Q71ET3_PSINU
          Length = 1013

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 32/95 (33%), Positives = 50/95 (52%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            SD+ P +IV  V+ L  R +V+  ++                           E+S+ AQ
Sbjct: 920  SDMHPMEIVEAVDKLQERLKVVPGED---------------------------EISKEAQ 952

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
             NATL F + +R++LASK VL E+RLT++AF W++
Sbjct: 953  KNATLFFNILLRSTLASKRVLKEYRLTKEAFEWVI 987

[17][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
            RepID=Q30BD8_CYAPA
          Length = 1000

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 36/95 (37%), Positives = 48/95 (50%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            SDL P  I++GVELL  +  V+  ++                            LS  AQ
Sbjct: 900  SDLRPDIILQGVELLSTQLVVIAGEDT---------------------------LSREAQ 932

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
             NAT LF +H+RA+LA+K VLSE+RL+  A  WLL
Sbjct: 933  ENATRLFNIHLRATLATKRVLSEYRLSAAALEWLL 967

[18][TOP]
>UniRef100_Q1ACT8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kalanchoe
           tomentosa RepID=Q1ACT8_9MAGN
          Length = 240

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 31/95 (32%), Positives = 49/95 (51%)
 Frame = +3

Query: 3   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
           SD+ P +IV  ++ L  R +V+  ++   ++A                           Q
Sbjct: 150 SDMHPMEIVEAIDKLQERLKVVPGEDSLSIEA---------------------------Q 182

Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
            NATLLF + +R++ ASK VLSE+RLTR+AF W++
Sbjct: 183 KNATLLFNILLRSTFASKRVLSEYRLTREAFEWVV 217

[19][TOP]
>UniRef100_Q9U5F6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Eptatretus burgeri
           RepID=Q9U5F6_EPTBU
          Length = 595

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 31/95 (32%), Positives = 47/95 (49%)
 Frame = +3

Query: 3   SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
           +DL+P ++V GV  L  + +++  D+                            +S  AQ
Sbjct: 501 TDLNPLRVVEGVNDLTQKLQIVKGDDP---------------------------ISRQAQ 533

Query: 183 LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
            NATLLF  HVRA+L ++ +  EHRL+ +AF WLL
Sbjct: 534 QNATLLFNCHVRATLCTRRLAEEHRLSSEAFEWLL 568

[20][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 37/95 (38%), Positives = 46/95 (48%)
 Frame = +3

Query: 3    SDLSPSKIVRGVELLLHRTRVLTSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQ 182
            S+L P +IVR V  LL R  V+T ++                            LS  AQ
Sbjct: 925  SNLRPEEIVRDVNDLLSRCIVITGEDG---------------------------LSTMAQ 957

Query: 183  LNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLL 287
             NATLLF + VR  LA+K V +EHRL R AF WL+
Sbjct: 958  HNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLI 992