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[1][TOP] >UniRef100_Q86AQ5 DNA-directed RNA polymerase III subunit rpc1 n=1 Tax=Dictyostelium discoideum RepID=RPC1_DICDI Length = 1450 Score = 127 bits (320), Expect = 4e-28 Identities = 64/149 (42%), Positives = 99/149 (66%) Frame = +1 Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLP 285 Y DA + N +++ H+ + DDLNPL L LF+ ++ +D+ +++M V GRPERLIL Y+ Sbjct: 191 YDDAIKYNPEMKSHIKKAQDDLNPLVALNLFKKISYQDIEIMNMDPVIGRPERLILTYML 250 Query: 286 VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVE 465 VPP+ IRP+V D +G+ EDDLTMKL+EI+H+NE + +++ + +M+ ++LQ Sbjct: 251 VPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNVDRAEMSA-IMEDWDYLQAS 309 Query: 466 AARFMNSDATNLPPLASTAKPLRGISQRL 552 A ++NSD LP K +RG+SQRL Sbjct: 310 CAIYINSDVPGLPLQMKPTKAVRGLSQRL 338 [2][TOP] >UniRef100_C9SQ00 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SQ00_9PEZI Length = 1456 Score = 124 bits (310), Expect = 6e-27 Identities = 65/170 (38%), Positives = 100/170 (58%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 Y K T + ++++ +AK+ N DL++HL + +DLNPLR L LF+ ++ D Sbjct: 188 YNKSTSMKKVPPESKIVFDASFDEAKKQNPDLDKHLRKAMEDLNPLRVLNLFKTISPTDC 247 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 L+ + V GRPE I ++LP PP+CIRP+V D + STEDDLT KL +IV ++ + Sbjct: 248 ELLGLDPVEGRPEMFIWQFLPAPPVCIRPSVAQDNA--STEDDLTTKLADIVWISGMIRL 305 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 ++ G P +M+ E+LQ++ A ++NSD L K +RG QRL Sbjct: 306 ALQKGSPVQTIMEQWEYLQLQIAMYVNSDVPGLQQ-PGFGKTVRGFCQRL 354 [3][TOP] >UniRef100_A7EYX3 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EYX3_SCLS1 Length = 1459 Score = 124 bits (310), Expect = 6e-27 Identities = 64/170 (37%), Positives = 100/170 (58%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 Y K T + A + ++ +AK+NN +LE+H+ +V +DL+PLR L LF+ +T D Sbjct: 189 YNKSTAAKKVAPPGMAEYQKSFEEAKKNNTELEKHVKKVYEDLHPLRVLNLFKLITPSDC 248 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 L+ + GRPE + +++P PP+CIRP+V D GS EDDLT KL EIV+M+ + Sbjct: 249 ELLGINPAEGRPEMFLWQFVPAPPICIRPSVAQD--GGSNEDDLTAKLAEIVNMSSLIRA 306 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 ++ G +M+ ++LQ++ A ++NSD L K +RG QRL Sbjct: 307 ALQKGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQ-PGFGKAIRGFCQRL 355 [4][TOP] >UniRef100_Q1DVM7 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis RepID=Q1DVM7_COCIM Length = 1430 Score = 122 bits (306), Expect = 2e-26 Identities = 64/152 (42%), Positives = 95/152 (62%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +AKR+N D+E+H +V DDLNPLR L LF ++ ED L+ + RPE + + Sbjct: 211 DRSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISDEDCELLGLNPEEVRPEMFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+ IRP+V + STEDDLT KL +IV N L +IN G P +++ +++ Sbjct: 271 YIPAPPVSIRPSVGQE--GASTEDDLTAKLGDIVQSNINLKNAINKGAPVQTIIECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RGI QRL Sbjct: 329 QLQIAVYINSDVPGLQK-ADFGKPIRGICQRL 359 [5][TOP] >UniRef100_C5PCH6 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta SOWgp RepID=C5PCH6_COCP7 Length = 1444 Score = 122 bits (306), Expect = 2e-26 Identities = 64/152 (42%), Positives = 95/152 (62%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +AKR+N D+E+H +V DDLNPLR L LF ++ ED L+ + RPE + + Sbjct: 211 DRSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISDEDCELLGLNPEEVRPEMFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+ IRP+V + STEDDLT KL +IV N L +IN G P +++ +++ Sbjct: 271 YIPAPPVSIRPSVGQE--GASTEDDLTAKLGDIVQSNINLKNAINKGAPVQTIIECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RGI QRL Sbjct: 329 QLQIAVYINSDVPGLQK-ADFGKPIRGICQRL 359 [6][TOP] >UniRef100_C4JWU1 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JWU1_UNCRE Length = 1435 Score = 122 bits (306), Expect = 2e-26 Identities = 64/158 (40%), Positives = 96/158 (60%) Frame = +1 Query: 79 AKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRP 258 A + ++ +AKR+N D+E+H +V DDLNPLR L LF ++ ED L+ + RP Sbjct: 205 ASKLVFDQSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISNEDCELLGLNPKEVRP 264 Query: 259 ERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLM 438 E + +++P PP+ IRP+V + STEDDLT KL +IV N L +IN G P ++ Sbjct: 265 EMFLWQFIPAPPVSIRPSVGQE--GASTEDDLTAKLGDIVQSNINLKNAINKGAPVQTII 322 Query: 439 DGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + +++Q++ A ++NSD L A KP+RGI QRL Sbjct: 323 ECWDYMQLQIAVYINSDVPGLQK-ADFGKPIRGICQRL 359 [7][TOP] >UniRef100_O94666 DNA-directed RNA polymerase III subunit rpc1 n=1 Tax=Schizosaccharomyces pombe RepID=RPC1_SCHPO Length = 1405 Score = 122 bits (306), Expect = 2e-26 Identities = 61/150 (40%), Positives = 95/150 (63%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ +A + +L+ HLS+ DDLNPL+ L LF+ +T D L+ M GRPE L+ RY+ Sbjct: 192 SFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDCELLGMDPEHGRPENLLWRYV 251 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 P PP+CIRP+V + +TEDDLT+K+TEI+ + + +++ G P LM+ E++Q+ Sbjct: 252 PAPPVCIRPSVAQE--GATTEDDLTVKITEIIWTSSLIRAALSKGTPISNLMEQWEFMQL 309 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 A ++NS+ L P +KP+RG QRL Sbjct: 310 SIAMYINSEMPGLRPSDMPSKPIRGFCQRL 339 [8][TOP] >UniRef100_C1MN08 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MN08_9CHLO Length = 1591 Score = 121 bits (303), Expect = 4e-26 Identities = 65/150 (43%), Positives = 94/150 (62%), Gaps = 1/150 (0%) Frame = +1 Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLP 285 + +A + N L+++LSRV DDLNP+R +++F ++ D L+D + RPE LIL +LP Sbjct: 215 FEEAVKFNDQLKQNLSRVQDDLNPIRVISIFRRISPMDCELLD---IADRPEHLILTHLP 271 Query: 286 VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVE 465 VPP+CIRP+V D AGS EDD+TMKL +I+ +N L + + G LM+ ++LQV+ Sbjct: 272 VPPVCIRPSVEMDGVAGSNEDDITMKLIQIIEVNNVLRQGLEKGLAIANLMENWDFLQVQ 331 Query: 466 AARFMNSDATNLP-PLASTAKPLRGISQRL 552 A + NS+ L KPLRG QRL Sbjct: 332 IAMYFNSELPGLSLQYQGPGKPLRGFVQRL 361 [9][TOP] >UniRef100_B6K857 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K857_SCHJY Length = 1406 Score = 120 bits (302), Expect = 5e-26 Identities = 65/159 (40%), Positives = 92/159 (57%) Frame = +1 Query: 76 QAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGR 255 Q + ++ A + DL HL + DDLNPLR L LF+ +T D L+ M GR Sbjct: 183 QEEGGEFRQSFDQALKAMPDLRPHLHKAHDDLNPLRVLNLFKQITPMDCELLGMDPEKGR 242 Query: 256 PERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLL 435 PE L+ +Y+P PP+ IRPTV + +TEDD+T+KLTEIV + + ++N G P L Sbjct: 243 PENLLWQYMPAPPVTIRPTVAQE--GATTEDDITIKLTEIVWTSSLIRAALNKGTPINSL 300 Query: 436 MDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 M+ E+LQ+ A ++NS+ L P +KP RG QRL Sbjct: 301 MEQWEFLQLSVALYINSELPGLRPPDMPSKPTRGFCQRL 339 [10][TOP] >UniRef100_B7PVV6 DNA-directed RNA polymerase n=1 Tax=Ixodes scapularis RepID=B7PVV6_IXOSC Length = 1394 Score = 119 bits (299), Expect = 1e-25 Identities = 66/174 (37%), Positives = 101/174 (58%), Gaps = 1/174 (0%) Frame = +1 Query: 34 INLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD-LNPLRTLALFEAMT 210 + L + K + A A + +A+ N +L+ + +V D LNPL L LF + Sbjct: 172 LKLVHERFKATKKNDAMLAEFLEDFDEARGYNPELDSVMGKVTSDILNPLVVLHLFRRIL 231 Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390 EDV L+ M GRPE LIL +PVPPLCIRP+V S+ AG+ EDD+T+KLTEI+ +N+ Sbjct: 232 DEDVPLLVMNPKCGRPEDLILTRIPVPPLCIRPSVVSELKAGTNEDDVTVKLTEIIFLND 291 Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + + G ++M+ ++LQ++ A ++NS+ + +P KP RG QRL Sbjct: 292 VIQRHRASGAKMQMIMEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRL 345 [11][TOP] >UniRef100_A5DM42 DNA-directed RNA polymerase n=1 Tax=Pichia guilliermondii RepID=A5DM42_PICGU Length = 1379 Score = 119 bits (299), Expect = 1e-25 Identities = 71/161 (44%), Positives = 97/161 (60%), Gaps = 7/161 (4%) Frame = +1 Query: 91 AMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERL 267 A + + + N ++E+ RV DDLNPL+ L LF+ +T +D L + A GGRPE Sbjct: 126 AWDQEFDEVFARNPEVEKFAKRVHDDLNPLKVLNLFKQITPQDCELFGIDASRGGRPEMY 185 Query: 268 ILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGX 447 I RYLP PP+CIRP+V D A S EDD+T+KLTEIV + + I G LM+ Sbjct: 186 IWRYLPAPPVCIRPSVMMD--AQSNEDDITVKLTEIVWTSSLIKAGIEKGISINNLMEQW 243 Query: 448 EWLQVEAARFMNSDATN---LPPL---ASTAKPLRGISQRL 552 ++LQ+ A ++NSDA N LP + A +AKP+RG QRL Sbjct: 244 DYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRL 284 [12][TOP] >UniRef100_UPI000023CDC4 hypothetical protein FG09860.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023CDC4 Length = 2443 Score = 119 bits (298), Expect = 2e-25 Identities = 62/170 (36%), Positives = 96/170 (56%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 Y K T + ++++ +AKR N +L++HL + +DLNPLR L LF+ ++ D Sbjct: 1183 YNKSTSIKKTPPESKIKFDNSFNEAKRENPELDKHLRKAMEDLNPLRVLNLFKMISPTDC 1242 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 L+ + GRPE I ++LP PP+CIRP+V D + S EDD+T KL +IV ++ + Sbjct: 1243 ELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA--SNEDDITTKLADIVWVSGMIRS 1300 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 ++ G P +M+ E+LQ + A ++NSD L K RG QRL Sbjct: 1301 ALQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQ-PGFGKTTRGFCQRL 1349 [13][TOP] >UniRef100_A8IFE0 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8IFE0_CHLRE Length = 1167 Score = 119 bits (298), Expect = 2e-25 Identities = 67/148 (45%), Positives = 94/148 (63%), Gaps = 1/148 (0%) Frame = +1 Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291 DA + N L+ HL R+ DDL+PLR ALFEA+ ED+ L+D++ GRPE L++ ++ VP Sbjct: 461 DAMKYNDQLKGHLHRLADDLHPLRVRALFEAIPDEDLDLLDIQ---GRPEDLVVTHVAVP 517 Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471 P+ IRP+V D S EDD+TMKL +I+ +N L + + G P LM+ ++LQV+AA Sbjct: 518 PVAIRPSVEMD--GASNEDDITMKLMQIIEVNNVLRQGLEKGLPISNLMENWDFLQVQAA 575 Query: 472 RFMNSDATNLP-PLASTAKPLRGISQRL 552 +NSD LP +PLRG QRL Sbjct: 576 MLINSDLPGLPAQFQMPGRPLRGFVQRL 603 [14][TOP] >UniRef100_A7TNS6 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TNS6_VANPO Length = 1460 Score = 119 bits (298), Expect = 2e-25 Identities = 70/151 (46%), Positives = 91/151 (60%), Gaps = 8/151 (5%) Frame = +1 Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297 NN +LER R DDLNPL+TL LF+ + ED L ID GRPE I RYLP PP+ Sbjct: 207 NNPELERFAKRSMDDLNPLKTLNLFKQIRPEDCELLGIDSTVKAGRPETYIWRYLPAPPV 266 Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477 CIRP+V S S EDDLT+KLTEIV + + + G +M+ ++LQ+ A + Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEHWDYLQLSVAMY 326 Query: 478 MNSDATN--LPPLAST----AKPLRGISQRL 552 +NSD+ N + P AS+ AKP+RG QRL Sbjct: 327 INSDSVNPSMMPGASSGGAKAKPIRGFCQRL 357 [15][TOP] >UniRef100_B3RW43 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3RW43_TRIAD Length = 941 Score = 119 bits (297), Expect = 2e-25 Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 1/148 (0%) Frame = +1 Query: 112 DAKRNNADLERHL-SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPV 288 DA +N DLE + S+ + LNPL L LF M+ ED L+ M+ GRPE LI+ L V Sbjct: 199 DAVESNKDLENFVASKSQEILNPLLVLKLFSGMSDEDCLLVGMKPNNGRPEDLIIERLLV 258 Query: 289 PPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEA 468 PPLCIRP+V +D GS EDDLTMKLTEI+ +++ + +S G +LM+ + LQ+ Sbjct: 259 PPLCIRPSVMTDSQMGSNEDDLTMKLTEIILISDYINRSRQNGAKIQILMELWDNLQIHV 318 Query: 469 ARFMNSDATNLPPLASTAKPLRGISQRL 552 + ++NS+ + LP + +P+RG QRL Sbjct: 319 SLYINSETSGLPYGSQPNRPIRGFCQRL 346 [16][TOP] >UniRef100_A6SCV1 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6SCV1_BOTFB Length = 1468 Score = 119 bits (297), Expect = 2e-25 Identities = 63/170 (37%), Positives = 99/170 (58%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 Y K T + A + ++ +AK++N +LE+H+ +V +DL+PLR L LF+ +T D Sbjct: 186 YNKSTAAKKVVPPGMAEYQKSFEEAKKHNTELEKHVKKVYEDLHPLRVLNLFKLITPSDC 245 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 L+ + GRPE + +++P PP+CIRP+V D GS EDD+T KL EIV M L Sbjct: 246 ELLGINPAEGRPEMFLWQFVPAPPICIRPSVQQD--GGSNEDDITTKLAEIVSMASLLRA 303 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 +++ G +M+ ++LQ++ A ++NSD L K +RG QRL Sbjct: 304 ALHKGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQ-PGFGKAIRGFCQRL 352 [17][TOP] >UniRef100_Q6FKG9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata RepID=Q6FKG9_CANGA Length = 1459 Score = 118 bits (296), Expect = 3e-25 Identities = 67/151 (44%), Positives = 94/151 (62%), Gaps = 8/151 (5%) Frame = +1 Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVG--GRPERLILRYLPVPPL 297 +N +LER++ R DDLNPL+TL LF+ + +ED L+ + A GRPE I RY+P PP+ Sbjct: 207 HNPELERYVKRATDDLNPLKTLNLFKQIASEDCELLGIDATNKAGRPETYIWRYIPAPPV 266 Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477 CIRP+V S S EDDLT+KLTEIV + + I G +M+ ++LQ+ A + Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGIEKGISINNMMEHWDYLQMTVAMY 326 Query: 478 MNSDATN--LPPLAST----AKPLRGISQRL 552 +NSD+ N + P +ST KP+RG QRL Sbjct: 327 INSDSINPAMLPGSSTGGGKVKPIRGFCQRL 357 [18][TOP] >UniRef100_Q6CMC7 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis RepID=Q6CMC7_KLULA Length = 1457 Score = 118 bits (296), Expect = 3e-25 Identities = 71/161 (44%), Positives = 96/161 (59%), Gaps = 9/161 (5%) Frame = +1 Query: 97 ESAYGDAKR---NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPE 261 E GD K+ NN +LER++ R DDLNPL+ L LF+ + D L ID + GRPE Sbjct: 195 EQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDSTSKSGRPE 254 Query: 262 RLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMD 441 I RYLP PP+CIRP+V S S EDDLT+KLTEIV + + + G +M+ Sbjct: 255 TYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMME 314 Query: 442 GXEWLQVEAARFMNSDATN---LPPLAST-AKPLRGISQRL 552 ++LQ+ A ++NSD+ N LP + T +KP+RG QRL Sbjct: 315 QWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRL 355 [19][TOP] >UniRef100_C7YT68 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YT68_NECH7 Length = 1449 Score = 118 bits (296), Expect = 3e-25 Identities = 62/172 (36%), Positives = 97/172 (56%) Frame = +1 Query: 37 NLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAE 216 + Y K T + ++++ +AKR N +L++HL + +DLNPLR L LF+ ++ Sbjct: 188 SFYNKSTSVKKVPPESKIKFDNSFTEAKRENPELDKHLRKAMEDLNPLRVLNLFKMISPT 247 Query: 217 DVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEAL 396 D L+ + GRPE I ++LP PP+CIRP+V D + S EDD+T KL +IV ++ + Sbjct: 248 DCELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA--SNEDDITTKLADIVWVSGMI 305 Query: 397 AKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 ++ G P +M+ E+LQ + A ++NSD L K RG QRL Sbjct: 306 RSALQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQ-PGFGKATRGFCQRL 356 [20][TOP] >UniRef100_C1GGI7 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1GGI7_PARBD Length = 1458 Score = 118 bits (296), Expect = 3e-25 Identities = 59/152 (38%), Positives = 94/152 (61%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +AK++N ++E+H + DDL+PLR L LF ++ ED L+ + RPE + + Sbjct: 211 DRSFEEAKKSNPEIEKHFKKAHDDLHPLRVLKLFRRISNEDCELLGLNPAEARPEVFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++N G P +++ + + Sbjct: 271 YIPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNMNLKNALNKGAPVQTIIECWDHM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359 [21][TOP] >UniRef100_C4R7G6 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115 RepID=C4R7G6_PICPG Length = 1460 Score = 118 bits (295), Expect = 3e-25 Identities = 67/152 (44%), Positives = 90/152 (59%), Gaps = 9/152 (5%) Frame = +1 Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERLILRYLPVPPLC 300 NN DLE+ L R DDLNPL+ L LF+ + D L+ + GGRPE + RY+P PP+C Sbjct: 207 NNPDLEKFLKRAYDDLNPLKVLNLFKQVDPSDCELLGIDTTRGGRPEMYLWRYVPAPPVC 266 Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480 IRP+V S S EDDLT+KLTEIV ++ + I G L++ ++LQ+ A ++ Sbjct: 267 IRPSVLMSDSNTSNEDDLTVKLTEIVWISSLIRAGIEKGISINNLIEQWDYLQLSVAMYI 326 Query: 481 NSDATNLPPLASTA--------KPLRGISQRL 552 NSDA N+ L S A KP+RG QRL Sbjct: 327 NSDAGNMSMLPSAAGSAGSKSSKPIRGFCQRL 358 [22][TOP] >UniRef100_UPI000155D900 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1 Tax=Equus caballus RepID=UPI000155D900 Length = 1390 Score = 117 bits (294), Expect = 4e-25 Identities = 63/150 (42%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [23][TOP] >UniRef100_UPI0000DA3EBF PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1 Tax=Rattus norvegicus RepID=UPI0000DA3EBF Length = 1390 Score = 117 bits (294), Expect = 4e-25 Identities = 63/150 (42%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [24][TOP] >UniRef100_UPI0000DA3DE9 PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=2 Tax=Rattus norvegicus RepID=UPI0000DA3DE9 Length = 1362 Score = 117 bits (294), Expect = 4e-25 Identities = 63/150 (42%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [25][TOP] >UniRef100_UPI00004BFD05 PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1 Tax=Canis lupus familiaris RepID=UPI00004BFD05 Length = 1390 Score = 117 bits (294), Expect = 4e-25 Identities = 63/150 (42%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [26][TOP] >UniRef100_UPI0000EB3E23 DNA-directed RNA polymerase III subunit RPC1 (EC 2.7.7.6) (RNA polymerase III subunit C1) (DNA-directed RNA polymerase III subunit A) (DNA-directed RNA polymerase III largest subunit) (RPC155) (C160). n=1 Tax=Canis lupus familiaris RepID=UPI0000EB3E23 Length = 1393 Score = 117 bits (294), Expect = 4e-25 Identities = 63/150 (42%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [27][TOP] >UniRef100_Q7TSI4 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=Q7TSI4_MOUSE Length = 649 Score = 117 bits (294), Expect = 4e-25 Identities = 63/150 (42%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [28][TOP] >UniRef100_B2RXC6 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=B2RXC6_MOUSE Length = 1390 Score = 117 bits (294), Expect = 4e-25 Identities = 63/150 (42%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [29][TOP] >UniRef100_B7Z6H4 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B7Z6H4_HUMAN Length = 1369 Score = 117 bits (294), Expect = 4e-25 Identities = 63/150 (42%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [30][TOP] >UniRef100_O14802 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Homo sapiens RepID=RPC1_HUMAN Length = 1390 Score = 117 bits (294), Expect = 4e-25 Identities = 63/150 (42%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AEDV L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [31][TOP] >UniRef100_UPI00019259E0 PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI00019259E0 Length = 534 Score = 117 bits (293), Expect = 6e-25 Identities = 61/171 (35%), Positives = 100/171 (58%) Frame = +1 Query: 40 LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAED 219 L++K T + ++++ +A N +L+ S++ LNPL+ +F+ +T ED Sbjct: 175 LHEKYKTTRKVDDGIITDFKNSFNEAIVYNKELDGITSKMNLVLNPLKVFHIFQNITEED 234 Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399 L+ M GRPE LI+ +PVPP CIRP+V S+ AGS EDDLTMKLTE++ +N+ + Sbjct: 235 CYLLGMVPASGRPEDLIITRVPVPPACIRPSVISELQAGSNEDDLTMKLTEMIFLNDVIR 294 Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 K + G ++M+ ++LQ++ A ++N + + +P K RG QRL Sbjct: 295 KHRSTGAKVQIIMEDWDFLQLQCALYINGEMSGIPMNMQPKKATRGFVQRL 345 [32][TOP] >UniRef100_UPI00017EFF90 PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1 Tax=Sus scrofa RepID=UPI00017EFF90 Length = 1390 Score = 117 bits (293), Expect = 6e-25 Identities = 62/150 (41%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AED+ L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [33][TOP] >UniRef100_UPI000151B46E DNA-directed RNA polymerase III largest subunit n=1 Tax=Pichia guilliermondii ATCC 6260 RepID=UPI000151B46E Length = 1379 Score = 117 bits (293), Expect = 6e-25 Identities = 70/161 (43%), Positives = 96/161 (59%), Gaps = 7/161 (4%) Frame = +1 Query: 91 AMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERL 267 A + + + N ++E+ RV DDLNPL+ L LF+ +T +D L + A GGRPE Sbjct: 126 AWDQEFDEVFARNPEVEKFAKRVHDDLNPLKVLNLFKQITPQDCELFGIDASRGGRPEMY 185 Query: 268 ILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGX 447 I RYLP PP+CIRP+V D A EDD+T+KLTEIV + + I G LM+ Sbjct: 186 IWRYLPAPPVCIRPSVMMD--AQLNEDDITVKLTEIVWTSSLIKAGIEKGISINNLMEQW 243 Query: 448 EWLQVEAARFMNSDATN---LPPL---ASTAKPLRGISQRL 552 ++LQ+ A ++NSDA N LP + A +AKP+RG QRL Sbjct: 244 DYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRL 284 [34][TOP] >UniRef100_UPI00003AE23E polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1 Tax=Gallus gallus RepID=UPI00003AE23E Length = 1390 Score = 117 bits (293), Expect = 6e-25 Identities = 62/150 (41%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AED+ L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [35][TOP] >UniRef100_C5DJG5 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DJG5_LACTC Length = 1460 Score = 117 bits (293), Expect = 6e-25 Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 7/150 (4%) Frame = +1 Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297 +N +LER++ + DDLNPL+TL LF+ + ED L ID GRPE I RYLP PP+ Sbjct: 207 HNPELERYVKKCMDDLNPLKTLNLFKQVAPEDCELLGIDSTVKSGRPETYIWRYLPAPPV 266 Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477 CIRP+V S S EDDLT+KLTEIV + + + G +M+ ++LQ+ A + Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQLAVAMY 326 Query: 478 MNSDATN--LPPLAST---AKPLRGISQRL 552 +NSD+ N + P ST KP+RG QRL Sbjct: 327 INSDSVNPAMMPGGSTGGKTKPIRGFCQRL 356 [36][TOP] >UniRef100_Q5ZL98 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Gallus gallus RepID=RPC1_CHICK Length = 1390 Score = 117 bits (293), Expect = 6e-25 Identities = 62/150 (41%), Positives = 94/150 (62%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L LF+ + AED+ L+ M G+P LIL L Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRL 255 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [37][TOP] >UniRef100_UPI0001923A0F PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001923A0F Length = 391 Score = 117 bits (292), Expect = 7e-25 Identities = 61/171 (35%), Positives = 100/171 (58%) Frame = +1 Query: 40 LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAED 219 L++K T + ++++ +A N +L+ S++ LNPL+ +F+ +T ED Sbjct: 121 LHEKYKTTRKVDDGIITDFKNSFNEAIVYNKELDGITSKMNLVLNPLKVFHIFQNITDED 180 Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399 L+ M GRPE LI+ +PVPP CIRP+V S+ AGS EDDLTMKLTE++ +N+ + Sbjct: 181 CYLLGMVPASGRPEDLIITRVPVPPACIRPSVISELQAGSNEDDLTMKLTEMIFLNDVIR 240 Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 K + G ++M+ ++LQ++ A ++N + + +P K RG QRL Sbjct: 241 KHRSTGAKVQIIMEDWDFLQLQCALYINGEMSGIPMNMQPKKATRGFVQRL 291 [38][TOP] >UniRef100_C1E5P6 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299 RepID=C1E5P6_9CHLO Length = 1479 Score = 117 bits (292), Expect = 7e-25 Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 1/185 (0%) Frame = +1 Query: 1 GAGGGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPL 180 GA GA+ I K EL E A + +A ++N L+ +L+RV DDLNP+ Sbjct: 185 GAVKRTGASLKIVHEKYSKNPELME-----AYVKEFEEAVKHNDQLKANLARVQDDLNPI 239 Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360 R ++ ++ D L+D V RPE LIL +LPVPP+CIRP+V + AGS EDD+TM Sbjct: 240 RVESILSKISPMDCELLD---VADRPEHLILTHLPVPPVCIRPSVEMEGQAGSNEDDITM 296 Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNL-PPLASTAKPLRG 537 KL +I+ +N L + + G LM+ ++LQ++ A ++NS+ L KPLRG Sbjct: 297 KLIQIIEVNNVLRQGLEKGLAINNLMENWDFLQIQCAMYINSELPGLSAQYQGPGKPLRG 356 Query: 538 ISQRL 552 QRL Sbjct: 357 FVQRL 361 [39][TOP] >UniRef100_C6HPI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus H143 RepID=C6HPI8_AJECH Length = 1333 Score = 117 bits (292), Expect = 7e-25 Identities = 58/152 (38%), Positives = 95/152 (62%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +AK++N D+++H + DDL+PLR L LF +++ ED L+ + RPE + + Sbjct: 178 DKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLNPEEARPEVFLWQ 237 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++ G P +++ +++ Sbjct: 238 YVPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTIIECWDYM 295 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 296 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 326 [40][TOP] >UniRef100_C5JRK1 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis SLH14081 RepID=C5JRK1_AJEDS Length = 1456 Score = 117 bits (292), Expect = 7e-25 Identities = 58/152 (38%), Positives = 95/152 (62%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +AK++N D+E+H + DDL+PLR L LF +++ +D L+ + RPE + + Sbjct: 211 DQSFEEAKKSNPDIEKHFKKAHDDLHPLRVLKLFRSVSDKDCELLGLNPEEARPEVFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++ G P +++ +++ Sbjct: 271 YIPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALYKGAPVQTIIECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359 [41][TOP] >UniRef100_C5GRI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3 RepID=C5GRI8_AJEDR Length = 1456 Score = 117 bits (292), Expect = 7e-25 Identities = 58/152 (38%), Positives = 95/152 (62%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +AK++N D+E+H + DDL+PLR L LF +++ +D L+ + RPE + + Sbjct: 211 DQSFEEAKKSNPDIEKHFKKAHDDLHPLRVLKLFRSVSDKDCELLGLNPEEARPEVFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++ G P +++ +++ Sbjct: 271 YIPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALYKGAPVQTIIECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359 [42][TOP] >UniRef100_C0NZL8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR RepID=C0NZL8_AJECG Length = 1456 Score = 117 bits (292), Expect = 7e-25 Identities = 58/152 (38%), Positives = 95/152 (62%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +AK++N D+++H + DDL+PLR L LF +++ ED L+ + RPE + + Sbjct: 211 DKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLNPEEARPEVFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++ G P +++ +++ Sbjct: 271 YVPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTIIECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359 [43][TOP] >UniRef100_A6RGX8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6RGX8_AJECN Length = 1439 Score = 117 bits (292), Expect = 7e-25 Identities = 58/152 (38%), Positives = 95/152 (62%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +AK++N D+++H + DDL+PLR L LF +++ ED L+ + RPE + + Sbjct: 211 DKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLNPEEARPEVFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+CIRP+V + A STEDDLT KL +I+ N L ++ G P +++ +++ Sbjct: 271 YVPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTIIECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359 [44][TOP] >UniRef100_UPI0000612BF9 UPI0000612BF9 related cluster n=1 Tax=Bos taurus RepID=UPI0000612BF9 Length = 1392 Score = 116 bits (291), Expect = 1e-24 Identities = 65/169 (38%), Positives = 103/169 (60%) Frame = +1 Query: 46 KKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225 K T ++ + S+ ++S + A +N ++E L + ++LNPL L LF+ + AED+ Sbjct: 178 KYKTNKKVVDPIVSSFLQS-FETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIP 236 Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405 L+ M G+P LIL L VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K Sbjct: 237 LLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKH 296 Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 G ++M+ ++LQ++ A ++NS+ + +P + K RG QRL Sbjct: 297 RISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [45][TOP] >UniRef100_A4IF62 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Bos taurus RepID=RPC1_BOVIN Length = 1390 Score = 116 bits (291), Expect = 1e-24 Identities = 65/169 (38%), Positives = 103/169 (60%) Frame = +1 Query: 46 KKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225 K T ++ + S+ ++S + A +N ++E L + ++LNPL L LF+ + AED+ Sbjct: 178 KYKTNKKVVDPIVSSFLQS-FETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIP 236 Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405 L+ M G+P LIL L VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K Sbjct: 237 LLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKH 296 Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 G ++M+ ++LQ++ A ++NS+ + +P + K RG QRL Sbjct: 297 RISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [46][TOP] >UniRef100_UPI0001554E8D PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001554E8D Length = 1382 Score = 116 bits (290), Expect = 1e-24 Identities = 61/142 (42%), Positives = 90/142 (63%) Frame = +1 Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306 N ++E L R ++LNPL L LF+ + AED+ L+ M G+P LIL L VPPLCIR Sbjct: 196 NKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIR 255 Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNS 486 P+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A ++NS Sbjct: 256 PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINS 315 Query: 487 DATNLPPLASTAKPLRGISQRL 552 + + +P + K RG QRL Sbjct: 316 ELSGIPLNMAPKKWTRGFVQRL 337 [47][TOP] >UniRef100_UPI0000F2AF25 PREDICTED: similar to Proteasome (prosome, macropain) subunit, alpha type, 2 n=1 Tax=Monodelphis domestica RepID=UPI0000F2AF25 Length = 1390 Score = 116 bits (290), Expect = 1e-24 Identities = 61/142 (42%), Positives = 90/142 (63%) Frame = +1 Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306 N ++E L R ++LNPL L LF+ + AED+ L+ M G+P LIL L VPPLCIR Sbjct: 204 NKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIR 263 Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNS 486 P+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A ++NS Sbjct: 264 PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINS 323 Query: 487 DATNLPPLASTAKPLRGISQRL 552 + + +P + K RG QRL Sbjct: 324 ELSGIPLNMAPKKWTRGFVQRL 345 [48][TOP] >UniRef100_UPI000069FEE9 DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6) (RPC155) (RPC1). n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI000069FEE9 Length = 477 Score = 116 bits (290), Expect = 1e-24 Identities = 61/150 (40%), Positives = 92/150 (61%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L L + AED+ L+ M G+P LIL L Sbjct: 195 SFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRL 254 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 255 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQL 314 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 315 QCALYINSELSGIPMNMAPKKWTRGFVQRL 344 [49][TOP] >UniRef100_Q7ZXW5 DNA-directed RNA polymerase n=1 Tax=Xenopus laevis RepID=Q7ZXW5_XENLA Length = 489 Score = 116 bits (290), Expect = 1e-24 Identities = 61/150 (40%), Positives = 92/150 (61%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L L + AED+ L+ M G+P LIL L Sbjct: 195 SFDTAIEHNKEVESLLGRAQENLNPLVVLNLLRRIPAEDIPLLLMNPEAGKPSDLILTRL 254 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 255 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQL 314 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 315 QCALYINSELSGIPMNMAPKKWTRGFVQRL 344 [50][TOP] >UniRef100_A4IHM8 DNA-directed RNA polymerase n=1 Tax=Xenopus (Silurana) tropicalis RepID=A4IHM8_XENTR Length = 1390 Score = 116 bits (290), Expect = 1e-24 Identities = 61/150 (40%), Positives = 92/150 (61%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R ++LNPL L L + AED+ L+ M G+P LIL L Sbjct: 195 SFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRL 254 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 255 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQL 314 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 315 QCALYINSELSGIPMNMAPKKWTRGFVQRL 344 [51][TOP] >UniRef100_Q5KFV9 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans RepID=Q5KFV9_CRYNE Length = 1466 Score = 115 bits (289), Expect = 2e-24 Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Frame = +1 Query: 79 AKSAAME----SAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV 246 AK A+M+ + + +A N + HL++ DDLNPL+ L LFE +TAED L+ + Sbjct: 192 AKMASMKDEWMATFKNAVAENQAVATHLAKAVDDLNPLKVLNLFERITAEDCELLSLHPE 251 Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426 GRPE I +Y+ VPP CIRP+V S+ AG+ EDDLT KL EIV+ N LA ++LG Sbjct: 252 VGRPEDYIWQYISVPPPCIRPSVASE--AGNNEDDLTAKLAEIVNYNNTLALMMDLGRGI 309 Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 ++ E L A ++NS A + + S KP+RG QRL Sbjct: 310 EMISSNWEVLGQAVALYINSQAPGMQTIGS--KPIRGFVQRL 349 [52][TOP] >UniRef100_Q55QA7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans RepID=Q55QA7_CRYNE Length = 1466 Score = 115 bits (289), Expect = 2e-24 Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 4/162 (2%) Frame = +1 Query: 79 AKSAAME----SAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV 246 AK A+M+ + + +A N + HL++ DDLNPL+ L LFE +TAED L+ + Sbjct: 192 AKMASMKDEWMATFKNAVAENQAVATHLAKAVDDLNPLKVLNLFERITAEDCELLSLHPE 251 Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426 GRPE I +Y+ VPP CIRP+V S+ AG+ EDDLT KL EIV+ N LA ++LG Sbjct: 252 VGRPEDYIWQYISVPPPCIRPSVASE--AGNNEDDLTAKLAEIVNYNNTLALMMDLGRGI 309 Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 ++ E L A ++NS A + + S KP+RG QRL Sbjct: 310 EMISSNWEVLGQAVALYINSQAPGMQTIGS--KPIRGFVQRL 349 [53][TOP] >UniRef100_C7GMM0 Rpo31p n=1 Tax=Saccharomyces cerevisiae JAY291 RepID=C7GMM0_YEAS2 Length = 1460 Score = 115 bits (289), Expect = 2e-24 Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 8/151 (5%) Frame = +1 Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297 +N +LER++ R DDLNPL+TL LF+ + + D L ID GRPE I RYLP PP+ Sbjct: 207 HNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPV 266 Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477 CIRP+V S S EDDLT+KLTEIV + + ++ G +M+ ++LQ+ A + Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMY 326 Query: 478 MNSDATNLPPLASTA------KPLRGISQRL 552 +NSD+ N L ++ KP+RG QRL Sbjct: 327 INSDSVNPAMLPGSSNGGGKVKPIRGFCQRL 357 [54][TOP] >UniRef100_B3LJF9 DNA-directed RNA polymerase n=3 Tax=Saccharomyces cerevisiae RepID=B3LJF9_YEAS1 Length = 1460 Score = 115 bits (289), Expect = 2e-24 Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 8/151 (5%) Frame = +1 Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297 +N +LER++ R DDLNPL+TL LF+ + + D L ID GRPE I RYLP PP+ Sbjct: 207 HNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPV 266 Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477 CIRP+V S S EDDLT+KLTEIV + + ++ G +M+ ++LQ+ A + Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMY 326 Query: 478 MNSDATNLPPLASTA------KPLRGISQRL 552 +NSD+ N L ++ KP+RG QRL Sbjct: 327 INSDSVNPAMLPGSSNGGGKVKPIRGFCQRL 357 [55][TOP] >UniRef100_P04051 DNA-directed RNA polymerase III subunit RPC1 n=2 Tax=Saccharomyces cerevisiae RepID=RPC1_YEAST Length = 1460 Score = 115 bits (289), Expect = 2e-24 Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 8/151 (5%) Frame = +1 Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297 +N +LER++ R DDLNPL+TL LF+ + + D L ID GRPE I RYLP PP+ Sbjct: 207 HNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPV 266 Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477 CIRP+V S S EDDLT+KLTEIV + + ++ G +M+ ++LQ+ A + Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMY 326 Query: 478 MNSDATNLPPLASTA------KPLRGISQRL 552 +NSD+ N L ++ KP+RG QRL Sbjct: 327 INSDSVNPAMLPGSSNGGGKVKPIRGFCQRL 357 [56][TOP] >UniRef100_UPI00018665E5 hypothetical protein BRAFLDRAFT_127993 n=1 Tax=Branchiostoma floridae RepID=UPI00018665E5 Length = 1391 Score = 115 bits (288), Expect = 2e-24 Identities = 58/152 (38%), Positives = 95/152 (62%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +S++ A +N ++E + R ++LNP+ L +F + +D+ + M A GRP+ +IL Sbjct: 194 QSSFQSAVEHNKEIEGLIPRAQENLNPMVALHMFSRIPHQDLPFLIMDAEHGRPQDMILT 253 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 L VPPLCIRP+V ++ AG+ EDD+TMKLTEI+ +N+ + K G A ++M+ ++L Sbjct: 254 RLLVPPLCIRPSVSTELKAGTNEDDVTMKLTEILFLNDVIQKHRATGARAQMIMEDWDFL 313 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NS+ +P KP RG QRL Sbjct: 314 QLQCALYINSEQGGIPLNMQPKKPTRGFCQRL 345 [57][TOP] >UniRef100_Q0V3B7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q0V3B7_PHANO Length = 1473 Score = 115 bits (288), Expect = 2e-24 Identities = 62/170 (36%), Positives = 99/170 (58%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 + + T + A + ++ AK N DL++HL + DD++PLRTL LF+ ++ ED Sbjct: 193 FNRSTAKTKKPPAGKIEFDQSFETAKAANPDLDKHLKKAVDDMHPLRTLNLFKKISPEDC 252 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 L+ M RPE LI Y+PVPP+ +RP+V + G+TEDD+T K+ +I ++ + Sbjct: 253 ELLAMIPEDARPEMLIWEYMPVPPVALRPSVMQE--GGATEDDVTNKIGDICQISSIIRA 310 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + G P +LM+ ++LQ++ A ++NSDA L K +RG SQRL Sbjct: 311 GLARGFPLQILMEQWDFLQLQIAMYINSDAPGLKQ-QGLQKTMRGFSQRL 359 [58][TOP] >UniRef100_C5DY31 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732 RepID=C5DY31_ZYGRC Length = 1458 Score = 115 bits (288), Expect = 2e-24 Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 7/190 (3%) Frame = +1 Query: 4 AGGGRGAARSIN-LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPL 180 AGGG + + I+ ++ K + E+ K + ++ +LER++ R DDLNPL Sbjct: 169 AGGGSASLKIIHDTFRWAGKKSVPEKEKWIG---DWDSVLAHSPELERYVKRCMDDLNPL 225 Query: 181 RTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDL 354 +TL LF+ + ED L ID GRPE I RYLP PP+CIRP+V S S EDDL Sbjct: 226 KTLNLFKQVKPEDCELLGIDSTIKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDL 285 Query: 355 TMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA----STA 522 T+KLTE+V + + + G +M+ ++LQ+ A ++NSD+ N L+ Sbjct: 286 TVKLTEVVWTSSLIKAGLEKGISINNMMEHWDYLQLAVAMYINSDSVNPAILSGGTGGKV 345 Query: 523 KPLRGISQRL 552 KP+RG QRL Sbjct: 346 KPIRGFCQRL 355 [59][TOP] >UniRef100_A3GEY3 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis RepID=A3GEY3_PICST Length = 1448 Score = 115 bits (288), Expect = 2e-24 Identities = 76/196 (38%), Positives = 105/196 (53%), Gaps = 13/196 (6%) Frame = +1 Query: 4 AGGGRGAARSIN-----LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD 168 +G G A + ++ + KKPT + + + N +LE+ RV DD Sbjct: 169 SGAGPAALKIVHDTFRWIGKKPTP-------EKEYWDKEFDQVLSRNPELEKFAKRVYDD 221 Query: 169 LNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345 LNPL+TL LF+ +T D L + A GGRPE I RYLP PP+CIRP+V D S E Sbjct: 222 LNPLKTLNLFKQITPSDCELFGLDPARGGRPEMYIWRYLPAPPVCIRPSVMMDSQ--SNE 279 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS--- 516 DDLT+KLTEIV + + I G LM+ ++LQ+ A ++NSD+ N L S Sbjct: 280 DDLTVKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYINSDSANPALLPSSGG 339 Query: 517 ----TAKPLRGISQRL 552 ++KP+RG QRL Sbjct: 340 GGSKSSKPIRGFCQRL 355 [60][TOP] >UniRef100_UPI00017B08B5 UPI00017B08B5 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B08B5 Length = 1391 Score = 115 bits (287), Expect = 3e-24 Identities = 63/146 (43%), Positives = 91/146 (62%) Frame = +1 Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294 A +N LE LSR ++LNPL L LF+ ++ ED+ L+ M G P LIL L VPP Sbjct: 202 AIEHNKVLEPLLSRAQENLNPLVVLNLFKRISREDIPLLLMNPEAGIPADLILTRLLVPP 261 Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474 LCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A Sbjct: 262 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 321 Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552 ++NS+ + +P + K RG QRL Sbjct: 322 YINSELSGIPLNMAPKKWTRGFVQRL 347 [61][TOP] >UniRef100_Q4S3H6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4S3H6_TETNG Length = 1319 Score = 115 bits (287), Expect = 3e-24 Identities = 63/146 (43%), Positives = 91/146 (62%) Frame = +1 Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294 A +N LE LSR ++LNPL L LF+ ++ ED+ L+ M G P LIL L VPP Sbjct: 144 AIEHNKVLEPLLSRAQENLNPLVVLNLFKRISREDIPLLLMNPEAGIPADLILTRLLVPP 203 Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474 LCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A Sbjct: 204 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 263 Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552 ++NS+ + +P + K RG QRL Sbjct: 264 YINSELSGIPLNMAPKKWTRGFVQRL 289 [62][TOP] >UniRef100_C4YGE6 DNA-directed RNA polymerase n=1 Tax=Candida albicans RepID=C4YGE6_CANAL Length = 1448 Score = 115 bits (287), Expect = 3e-24 Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%) Frame = +1 Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303 N +LE+ R+ DDLNPL+TL LF+ +T +D L + A GGRPE I RYLP PP+CI Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267 Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483 RP+V D A S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N Sbjct: 268 RPSVMMD--AQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325 Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552 SD+ N P L A ++KP+R QRL Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353 [63][TOP] >UniRef100_B9WF61 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36 RepID=B9WF61_CANDC Length = 1448 Score = 115 bits (287), Expect = 3e-24 Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%) Frame = +1 Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303 N +LE+ R+ DDLNPL+TL LF+ +T +D L + A GGRPE I RYLP PP+CI Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267 Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483 RP+V D A S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N Sbjct: 268 RPSVMMD--AQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325 Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552 SD+ N P L A ++KP+R QRL Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353 [64][TOP] >UniRef100_B6H2R1 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H2R1_PENCW Length = 1448 Score = 115 bits (287), Expect = 3e-24 Identities = 60/152 (39%), Positives = 92/152 (60%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 ++++ +A+ N ++E+H + DD+NPLR L LF+ M+ D LI M RPE + + Sbjct: 211 DNSFLEARGANPEVEKHFKKAQDDMNPLRVLKLFKKMSDSDCELIGMNPKEARPEMFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 ++P PP+CIRP+V D STEDDLT KL +IV N L ++ G P +M+ +++ Sbjct: 271 FIPAPPVCIRPSVGQD--GASTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359 [65][TOP] >UniRef100_Q6BI69 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Debaryomyces hansenii RepID=RPC1_DEBHA Length = 1457 Score = 115 bits (287), Expect = 3e-24 Identities = 67/159 (42%), Positives = 95/159 (59%), Gaps = 7/159 (4%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDM-RAVGGRPERLIL 273 + + + N +LE+ + R+ DDLNPL+ L LF+ ++ D L+ + A GGRPE I Sbjct: 198 DKEFDEVFSRNPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELLGIDSARGGRPEMYIW 257 Query: 274 RYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEW 453 RYLP PP+CIRP+V D A S EDDLT+KLTEIV + + I G LM+ ++ Sbjct: 258 RYLPAPPVCIRPSVMMD--AQSNEDDLTIKLTEIVWTSSLIKAGIEKGISINNLMEQWDY 315 Query: 454 LQVEAARFMNSDATNLPPLAS------TAKPLRGISQRL 552 LQ+ A ++NSD+ N L S ++KP+RG QRL Sbjct: 316 LQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRL 354 [66][TOP] >UniRef100_UPI000194C79C PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1 Tax=Taeniopygia guttata RepID=UPI000194C79C Length = 1390 Score = 114 bits (286), Expect = 4e-24 Identities = 60/142 (42%), Positives = 89/142 (62%) Frame = +1 Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306 N ++E L R ++LNPL L LF+ + ED+ L+ M G+P LIL L VPPLCIR Sbjct: 204 NKEVEPLLGRAQENLNPLVVLNLFKRIPVEDIPLLLMNPQAGKPSDLILTRLLVPPLCIR 263 Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNS 486 P+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A ++NS Sbjct: 264 PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINS 323 Query: 487 DATNLPPLASTAKPLRGISQRL 552 + + +P + K RG QRL Sbjct: 324 ELSGIPLNMAPKKWTRGFVQRL 345 [67][TOP] >UniRef100_UPI00015A5DDB PREDICTED: im:7139382 n=1 Tax=Danio rerio RepID=UPI00015A5DDB Length = 1390 Score = 114 bits (286), Expect = 4e-24 Identities = 69/178 (38%), Positives = 107/178 (60%) Frame = +1 Query: 19 GAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALF 198 G + I+ K TK ++ + A S ++S + A +N ++E L+R ++LNPL L LF Sbjct: 170 GLLKIIHEKYKSTK-KVVDPAVSDFLQS-FDVAIEHNKEVESLLTRAQENLNPLVVLNLF 227 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 + +DV L+ M G+P LIL L VPPLCIRP+V SD +G+ EDDLTMKLTEI+ Sbjct: 228 RRIPDKDVPLLLMNPESGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEII 287 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 +N+ + K G ++M+ ++LQ++ A ++NS+ + +P + K RG QRL Sbjct: 288 FLNDVIKKHRMTGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRL 345 [68][TOP] >UniRef100_UPI00003BE6A5 hypothetical protein DEHA0G13849g n=1 Tax=Debaryomyces hansenii CBS767 RepID=UPI00003BE6A5 Length = 1457 Score = 114 bits (286), Expect = 4e-24 Identities = 67/149 (44%), Positives = 92/149 (61%), Gaps = 7/149 (4%) Frame = +1 Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDM-RAVGGRPERLILRYLPVPPLCI 303 N +LE+ + R+ DDLNPL+ L LF+ ++ D L+ + A GGRPE I RYLP PP+CI Sbjct: 208 NPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELLGIDSARGGRPEMYIWRYLPAPPVCI 267 Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483 RP+V D A S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N Sbjct: 268 RPSVMMD--AQSNEDDLTIKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYIN 325 Query: 484 SDATNLPPLAS------TAKPLRGISQRL 552 SD+ N L S ++KP+RG QRL Sbjct: 326 SDSANPALLPSSGGGSKSSKPIRGFCQRL 354 [69][TOP] >UniRef100_Q01DV6 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri RepID=Q01DV6_OSTTA Length = 1406 Score = 114 bits (285), Expect = 5e-24 Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 1/147 (0%) Frame = +1 Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294 A + N L L +V DDLNP+R L++ + +T +D L+D + RPE L+L +LPVPP Sbjct: 217 ALKYNEQLRASLPKVQDDLNPIRVLSILQRITDQDCELLD---IADRPEHLLLTHLPVPP 273 Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474 CIRP+V D +GS EDD+TMKL +I+ +N L + + G LM+ ++LQ++ A Sbjct: 274 CCIRPSVEMDGVSGSNEDDITMKLIQIIEVNNVLRQGLEKGLTINNLMENWDFLQIQCAM 333 Query: 475 FMNSDATNLP-PLASTAKPLRGISQRL 552 ++NS+ L KPLRG QRL Sbjct: 334 YINSELPGLSLQYQGPGKPLRGFVQRL 360 [70][TOP] >UniRef100_A1CLD8 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus RepID=A1CLD8_ASPCL Length = 1449 Score = 114 bits (285), Expect = 5e-24 Identities = 59/152 (38%), Positives = 93/152 (61%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +A+ +NA++E+H + DD+N LR L LF+ ++ D L+ + RPE + + Sbjct: 211 DRSFDEARNSNAEVEKHYKKAQDDMNALRVLNLFKKISDTDCELLGLNPKEARPEMFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 ++P PP+CIRP+V D A STEDDLT KL +IV N L S+ G P +M+ +++ Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNSLLKGAPVQTIMECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359 [71][TOP] >UniRef100_Q5A164 DNA-directed RNA polymerase n=1 Tax=Candida albicans RepID=Q5A164_CANAL Length = 1448 Score = 114 bits (284), Expect = 6e-24 Identities = 68/149 (45%), Positives = 92/149 (61%), Gaps = 7/149 (4%) Frame = +1 Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303 N +LE+ R+ DDLNPL+TL LF+ +T +D L + A GGRPE I RYLP PP+CI Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267 Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483 RP+V D + S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N Sbjct: 268 RPSVMMD--SQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325 Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552 SD+ N P L A ++KP+R QRL Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353 [72][TOP] >UniRef100_Q5A0Z3 DNA-directed RNA polymerase n=1 Tax=Candida albicans RepID=Q5A0Z3_CANAL Length = 1448 Score = 114 bits (284), Expect = 6e-24 Identities = 68/149 (45%), Positives = 92/149 (61%), Gaps = 7/149 (4%) Frame = +1 Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303 N +LE+ R+ DDLNPL+TL LF+ +T +D L + A GGRPE I RYLP PP+CI Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267 Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483 RP+V D + S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N Sbjct: 268 RPSVMMD--SQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325 Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552 SD+ N P L A ++KP+R QRL Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353 [73][TOP] >UniRef100_Q0CS43 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624 RepID=Q0CS43_ASPTN Length = 1450 Score = 114 bits (284), Expect = 6e-24 Identities = 64/170 (37%), Positives = 97/170 (57%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 Y T T+ A + + +A+R+N ++E+H + DDLN LR L LF+ ++ D Sbjct: 193 YNISTSTKKVLPPGKGAFDDSLMEARRHNPEVEKHHKKAQDDLNALRVLNLFKRISDTDC 252 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 L+ + RPE + +++P PP+CIRP+V D A STEDDLT KL +IV N L Sbjct: 253 ELLGLNPREARPEMFLWQFIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKN 310 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 S+ G P +M+ +++Q++ A ++NSD L A KP+RG QRL Sbjct: 311 SLLKGAPVHTIMECWDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359 [74][TOP] >UniRef100_B2VYJ3 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2VYJ3_PYRTR Length = 1471 Score = 114 bits (284), Expect = 6e-24 Identities = 64/175 (36%), Positives = 101/175 (57%) Frame = +1 Query: 28 RSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAM 207 RS KKP +L + ++ AK N D+++H+ + DD++PLR L LF+ + Sbjct: 195 RSTAKTKKPPPGKLE-------FDQSFDTAKSANPDVDKHVKKAVDDMHPLRALNLFKKI 247 Query: 208 TAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMN 387 + ED L+ M RPE LI Y+PVPP+ +RP+V + G+TEDD+T K+ +I H++ Sbjct: 248 SPEDCELLAMVPEDARPEMLIWEYMPVPPVALRPSVMQE--GGATEDDVTNKIGDICHIS 305 Query: 388 EALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + + G P +LM+ ++LQ++ A ++NSDA L K +RG SQRL Sbjct: 306 SIIRAGLARGFPLQILMEQWDFLQLQIAMYINSDAPGLKQ-QGLQKTMRGFSQRL 359 [75][TOP] >UniRef100_UPI00016E6B7B UPI00016E6B7B related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E6B7B Length = 649 Score = 113 bits (283), Expect = 8e-24 Identities = 62/146 (42%), Positives = 90/146 (61%) Frame = +1 Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294 A +N LE LSR ++LNPL LF+ ++ ED+ L+ M G P LIL L VPP Sbjct: 200 AIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPEAGTPADLILTRLLVPP 259 Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474 LCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A Sbjct: 260 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 319 Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552 ++NS+ + +P + K RG QRL Sbjct: 320 YINSELSGIPLNMAPKKWTRGFVQRL 345 [76][TOP] >UniRef100_UPI00016E6B7A UPI00016E6B7A related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E6B7A Length = 1320 Score = 113 bits (283), Expect = 8e-24 Identities = 62/146 (42%), Positives = 90/146 (61%) Frame = +1 Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294 A +N LE LSR ++LNPL LF+ ++ ED+ L+ M G P LIL L VPP Sbjct: 144 AIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPEAGTPADLILTRLLVPP 203 Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474 LCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A Sbjct: 204 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 263 Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552 ++NS+ + +P + K RG QRL Sbjct: 264 YINSELSGIPLNMAPKKWTRGFVQRL 289 [77][TOP] >UniRef100_UPI00016E6B79 UPI00016E6B79 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E6B79 Length = 1390 Score = 113 bits (283), Expect = 8e-24 Identities = 62/146 (42%), Positives = 90/146 (61%) Frame = +1 Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294 A +N LE LSR ++LNPL LF+ ++ ED+ L+ M G P LIL L VPP Sbjct: 200 AIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPEAGTPADLILTRLLVPP 259 Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474 LCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ++ A Sbjct: 260 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 319 Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552 ++NS+ + +P + K RG QRL Sbjct: 320 YINSELSGIPLNMAPKKWTRGFVQRL 345 [78][TOP] >UniRef100_A4RTE2 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RTE2_OSTLU Length = 1395 Score = 113 bits (283), Expect = 8e-24 Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 1/147 (0%) Frame = +1 Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294 A + N L L +V DDLNP+R L + + +T+ D L+D + RPE L+L +LPVPP Sbjct: 216 ALKYNEQLRASLPKVQDDLNPIRVLGILQRVTSADCELLD---IADRPEHLLLTHLPVPP 272 Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474 CIRP+V D +GS EDD+TMKL +I+ +N L + + G +M+ ++LQ++ A Sbjct: 273 CCIRPSVEMDGVSGSNEDDITMKLIQIIEVNNVLRQGLEKGLAVNNMMENWDFLQIQCAM 332 Query: 475 FMNSDATNLP-PLASTAKPLRGISQRL 552 ++NS+ L KPLRG QRL Sbjct: 333 YINSELPGLSLQYQGPGKPLRGFVQRL 359 [79][TOP] >UniRef100_C5FEK3 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480 RepID=C5FEK3_NANOT Length = 1443 Score = 113 bits (282), Expect = 1e-23 Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 2/156 (1%) Frame = +1 Query: 91 AMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLI 270 A + ++ +AK++N D+E+H RV DDLNPLR L LF ++ ED L+ + RPE + Sbjct: 208 AFDRSFEEAKKSNPDIEKHYRRVFDDLNPLRVLKLFRRISDEDCELLSLNVDEARPEYFL 267 Query: 271 LRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXE 450 +++P PP+ IRP+V + STEDDLT KL +IV N L +++ G P +++ + Sbjct: 268 WQFIPAPPVPIRPSVGQE--GASTEDDLTAKLGDIVQSNLNLKMALDKGAPVQTIIECWD 325 Query: 451 WLQVEAARFMNSDATNLPPLAST--AKPLRGISQRL 552 ++Q++ A ++NSD +P L +T K +RG+ QRL Sbjct: 326 YMQLQIAVYINSD---IPGLQNTDSKKSIRGLCQRL 358 [80][TOP] >UniRef100_A5E7R0 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus RepID=A5E7R0_LODEL Length = 1450 Score = 112 bits (281), Expect = 1e-23 Identities = 66/153 (43%), Positives = 93/153 (60%), Gaps = 11/153 (7%) Frame = +1 Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERLILRYLPVPPLCI 303 N +LE++ R+ +D NPL+TL LF+ +T D L M + GGRPE I RYLP PP+CI Sbjct: 209 NPELEKYAKRITEDFNPLKTLNLFKQITPSDCELFGMDPLRGGRPEMYIWRYLPAPPVCI 268 Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483 RP+V D A S EDDLT+KLTEIV + + I G LM+ ++LQ+ A ++N Sbjct: 269 RPSVMMD--AQSNEDDLTVKLTEIVWTSSMIKAGIAKGISMNNLMEQWDYLQLSVAMYIN 326 Query: 484 SDATN---LPPL-------ASTAKPLRGISQRL 552 SD+ N +P + + ++KP+RG QRL Sbjct: 327 SDSANPALIPSVGGGGGGGSKSSKPIRGFCQRL 359 [81][TOP] >UniRef100_A2QU24 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QU24_ASPNC Length = 1450 Score = 112 bits (281), Expect = 1e-23 Identities = 58/152 (38%), Positives = 93/152 (61%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +A+ +NA++E+H + DD+N LR L LF+ ++ D L+ + RPE + + Sbjct: 211 DRSFDEARTSNAEVEKHYKKAQDDMNALRVLNLFKKISDTDCELLGLNPKEARPEMFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 ++P PP+CIRP+V D A STEDDLT KL +IV N L ++ G P +M+ +++ Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359 [82][TOP] >UniRef100_C5MI79 DNA-directed RNA polymerase (Fragment) n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MI79_CANTT Length = 1159 Score = 112 bits (280), Expect = 2e-23 Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 7/151 (4%) Frame = +1 Query: 121 RNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPL 297 + N +L + + R+ DDLNPL+TL LF+ +T D L + A GGRPE I RYLP PP+ Sbjct: 206 QRNPELSKFVKRIHDDLNPLKTLNLFKQITPSDCELFGLDPAKGGRPEMYIWRYLPAPPV 265 Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477 CIRP+V D A S EDDLT+KLTEIV + + I G LM+ +++Q+ A + Sbjct: 266 CIRPSVMMD--AQSNEDDLTVKLTEIVWTSSMIKAGILKGISINNLMEQWDYMQLSVAMY 323 Query: 478 MNSDATNLPPL------ASTAKPLRGISQRL 552 +NSD+ N P L A +KP+R QRL Sbjct: 324 INSDSAN-PALSAGGGGAKASKPIRAFCQRL 353 [83][TOP] >UniRef100_A8Q6K6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q6K6_MALGO Length = 1376 Score = 112 bits (279), Expect = 2e-23 Identities = 66/172 (38%), Positives = 99/172 (57%), Gaps = 3/172 (1%) Frame = +1 Query: 46 KKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225 +K T+ E E K+ + + G N +L HL++ +DLNPLR L LF ++ ED Sbjct: 158 QKKTEEEQLEFRKTFSTAVSMG-----NGELAPHLNKAQEDLNPLRVLDLFRRISDEDCE 212 Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405 L+ ++ GRPE I +Y+ VPP+CIRP+V D + EDDLT+KLTEIV N + Sbjct: 213 LLALKPQFGRPEEYIWQYICVPPVCIRPSVAQD--GATNEDDLTVKLTEIVFTNNIIKSG 270 Query: 406 INLGGPAVL---LMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + G L++ ++LQ+ A ++NS+ +PP+ S KP+RG QRL Sbjct: 271 LTKGSKGTTTAQLVEQWDFLQLSVALYINSEMPGVPPM-SGHKPIRGFCQRL 321 [84][TOP] >UniRef100_Q756K2 DNA-directed RNA polymerase n=1 Tax=Eremothecium gossypii RepID=Q756K2_ASHGO Length = 1459 Score = 111 bits (278), Expect = 3e-23 Identities = 63/152 (41%), Positives = 91/152 (59%), Gaps = 8/152 (5%) Frame = +1 Query: 121 RNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPP 294 +++ +LER++ R ++LNPL+TL LF+ ++ +D L ID GRPE I RYLP PP Sbjct: 206 QHSPELERYMKRTMENLNPLKTLNLFKQISPQDCELLGIDSTVKAGRPETYIWRYLPAPP 265 Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474 +CIRP+V S S EDDLT+KLTEIV + + + G +M+ ++LQ+ A Sbjct: 266 VCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQMAVAM 325 Query: 475 FMNSDATNLPPL------ASTAKPLRGISQRL 552 ++NSD+ N P L KP+RG QRL Sbjct: 326 YINSDSVN-PALMPGGNGGGKTKPIRGFCQRL 356 [85][TOP] >UniRef100_A1D5Y9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D5Y9_NEOFI Length = 1453 Score = 111 bits (278), Expect = 3e-23 Identities = 57/152 (37%), Positives = 93/152 (61%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +A+ +NA++E+H + DD+N LR L LF+ ++ D L+ + RPE + + Sbjct: 211 DRSFDEARTSNAEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPKEARPEMFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 ++P PP+CIRP+V D A STEDDLT KL +IV N L ++ G P +++ +++ Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNALMKGAPVQTIVECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359 [86][TOP] >UniRef100_C4Y380 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y380_CLAL4 Length = 1491 Score = 111 bits (277), Expect = 4e-23 Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 10/159 (6%) Frame = +1 Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERLILRYL 282 + + N +LE+ RV +DLNPL+ L LF +T +D L + A GGRPE I RYL Sbjct: 234 FDEVFHRNPELEKFAKRVHEDLNPLKVLNLFRQITPQDCELFGIDAARGGRPEMYIWRYL 293 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 P PP+CIRP+V D S EDDLT+KLTEIV + + I G +M+ ++LQ+ Sbjct: 294 PAPPVCIRPSVMMDNQ--SNEDDLTVKLTEIVWTSSLIKAGIEKGISINNMMEQWDYLQL 351 Query: 463 EAARFMNSDATNLPPL---------ASTAKPLRGISQRL 552 A ++NSD+ N P L + ++KP+RG QRL Sbjct: 352 SVAMYINSDSAN-PALLPGGMGGSGSKSSKPIRGFCQRL 389 [87][TOP] >UniRef100_Q6CB20 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CB20_YARLI Length = 1483 Score = 110 bits (275), Expect = 7e-23 Identities = 63/152 (41%), Positives = 89/152 (58%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 ++++ AK + D+ER + DDLNPL+ LF + D L+ M GRPE I R Sbjct: 200 DNSFNTAKESIPDVERLQKKAMDDLNPLKVFNLFREILPMDCELLGMDPGKGRPETYIWR 259 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+CIRP+V D + S EDDLT+KLTEIV + + + G LM+ E L Sbjct: 260 YMPAPPVCIRPSVMQD--SASNEDDLTVKLTEIVWTSAIIEAGLKQGMAVASLMEQWELL 317 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q+ A ++NSD T P S +KP+R ++QRL Sbjct: 318 QLAVAVYINSD-TPQGPGQSASKPIRALTQRL 348 [88][TOP] >UniRef100_Q2U3T5 DNA-directed RNA polymerase n=1 Tax=Aspergillus oryzae RepID=Q2U3T5_ASPOR Length = 1447 Score = 110 bits (275), Expect = 7e-23 Identities = 58/152 (38%), Positives = 92/152 (60%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +A+ +N ++E+H + DD+N LR L LF+ ++ D L+ + RPE + + Sbjct: 211 DRSFEEARSHNPEVEKHHKKAQDDMNALRVLNLFKRISDTDCELLGLDPKEARPEMFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+CIRP+V D A STEDDLT KL +IV N L ++ G P +M+ +++ Sbjct: 271 YIPAPPVCIRPSVGQD--ASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359 [89][TOP] >UniRef100_B8NTG3 DNA-directed RNA polymerase n=1 Tax=Aspergillus flavus NRRL3357 RepID=B8NTG3_ASPFN Length = 1436 Score = 110 bits (275), Expect = 7e-23 Identities = 58/152 (38%), Positives = 92/152 (60%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +A+ +N ++E+H + DD+N LR L LF+ ++ D L+ + RPE + + Sbjct: 211 DRSFEEARSHNPEVEKHHKKAQDDMNALRVLNLFKRISDTDCELLGLDPKEARPEMFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP+CIRP+V D A STEDDLT KL +IV N L ++ G P +M+ +++ Sbjct: 271 YIPAPPVCIRPSVGQD--ASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359 [90][TOP] >UniRef100_A8PGH2 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8PGH2_COPC7 Length = 1403 Score = 110 bits (275), Expect = 7e-23 Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 3/171 (1%) Frame = +1 Query: 49 KPTKTELREQAKS--AAMESAYGDAKRNNADLERHLSR-VGDDLNPLRTLALFEAMTAED 219 K T EL + K+ AA+E+ +L +L++ V +DLNPL+ L LF ++ ED Sbjct: 179 KKTADELEKWKKTFVAAVEA--------QKELGMYLNKAVVEDLNPLKVLDLFRRISDED 230 Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399 L+ +R GRPE+ I +YL VPP+CIRP+V D S EDD+T+KLTEIV N + Sbjct: 231 CELLGLRPEWGRPEQFIWQYLSVPPVCIRPSVAQD--GASNEDDITVKLTEIVFTNALIK 288 Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + ++ G P M+ E+LQ+ A ++NS+ +P KP+RG QRL Sbjct: 289 QGLSKGAPTPQFMEQWEFLQLSVAMYINSELPGVPSQMG-QKPIRGFVQRL 338 [91][TOP] >UniRef100_A7SJ34 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis RepID=A7SJ34_NEMVE Length = 1398 Score = 109 bits (273), Expect = 1e-22 Identities = 56/152 (36%), Positives = 92/152 (60%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +S++ A NN +L L + + LNPLR L +F+ + +D L+ P LI+R Sbjct: 194 QSSFDVALENNKELSPLLPKAQEVLNPLRVLDIFQQIPEQDYPLLMFSPGMSHPHDLIMR 253 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 + PP+CIRP+V S+ ++GS EDD+TMKLTEIV +N+ + K ++G ++M+ ++L Sbjct: 254 RILAPPVCIRPSVISELASGSNEDDVTMKLTEIVFLNDVIRKHRSVGAKVQMIMEDWDFL 313 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NS+ + +P K RG QRL Sbjct: 314 QLQCALYINSEMSGIPLNMQPKKGTRGFVQRL 345 [92][TOP] >UniRef100_B0XZZ0 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus RepID=B0XZZ0_ASPFC Length = 1453 Score = 109 bits (273), Expect = 1e-22 Identities = 56/152 (36%), Positives = 92/152 (60%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +A+ +N ++E+H + DD+N LR L LF+ ++ D L+ + RPE + + Sbjct: 211 DRSFDEARTSNPEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPKEARPEMFLWQ 270 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 ++P PP+CIRP+V D A STEDDLT KL +IV N L ++ G P +++ +++ Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNALMKGAPVQTIVECWDYM 328 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 Q++ A ++NSD L A KP+RG QRL Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359 [93][TOP] >UniRef100_UPI0000E22532 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1 Tax=Pan troglodytes RepID=UPI0000E22532 Length = 1349 Score = 109 bits (272), Expect = 2e-22 Identities = 61/150 (40%), Positives = 89/150 (59%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 ++ A +N ++E L R NPL L L + AEDV L+ M G+P LIL L Sbjct: 155 SFETAIEHNKEVEPLLGRAQVYWNPLVVLNLLNEIPAEDVPLLLMNPEAGKPSDLILTRL 214 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 VPPLCIRP+V SD +G+ EDDLTMKLTEI+ +N+ + K G ++M+ ++LQ+ Sbjct: 215 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 274 Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ + +P + K RG QRL Sbjct: 275 QCALYINSELSGIPLNMAPKKWTRGFVQRL 304 [94][TOP] >UniRef100_C1GX38 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1GX38_PARBA Length = 1425 Score = 109 bits (272), Expect = 2e-22 Identities = 56/139 (40%), Positives = 84/139 (60%) Frame = +1 Query: 136 LERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTV 315 +E+H + DDL+PLR L LF ++ ED L+ + RPE + +Y+P PP+CIRP+V Sbjct: 192 IEKHFKKAHDDLHPLRVLKLFRRISNEDCELLGLNPAEARPEVFLWQYIPAPPVCIRPSV 251 Query: 316 CSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDAT 495 + A STEDDLT KL +I+ N L ++N G P +++ + +Q++ A ++NSD Sbjct: 252 GQE--AASTEDDLTAKLGDIIQSNMNLKNALNKGAPVQTIIECWDHMQLQLAVYINSDVP 309 Query: 496 NLPPLASTAKPLRGISQRL 552 L A KP+RG QRL Sbjct: 310 GLQK-ADFGKPIRGFCQRL 327 [95][TOP] >UniRef100_C8VPJ2 Putative uncharacterized protein n=2 Tax=Emericella nidulans RepID=C8VPJ2_EMENI Length = 1445 Score = 108 bits (271), Expect = 2e-22 Identities = 58/147 (39%), Positives = 89/147 (60%) Frame = +1 Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291 +A+ +N ++E+H + DDLN LR L LF+ ++ D L+ + RPE + +++P P Sbjct: 216 EARSSNPEVEKHHKKAQDDLNALRVLNLFKRISDSDCELLGLDPKEARPEMFLWQFIPAP 275 Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471 P+CIRP+V D A STEDDLT KL +IV N L ++ G P +M+ +++Q++ A Sbjct: 276 PVCIRPSVGQD--ASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYMQLQIA 333 Query: 472 RFMNSDATNLPPLASTAKPLRGISQRL 552 ++NSD L A KP+RG QRL Sbjct: 334 VYINSDVPGLNK-ADLGKPIRGFVQRL 359 [96][TOP] >UniRef100_B2ADZ3 DNA-directed RNA polymerase n=1 Tax=Podospora anserina RepID=B2ADZ3_PODAN Length = 1521 Score = 108 bits (271), Expect = 2e-22 Identities = 62/170 (36%), Positives = 93/170 (54%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 Y K T + ++++ AK + A+L +H R DD++PL+ L LF+ + + D Sbjct: 195 YNKSTAQKKVAPESKIEFDASFESAKAHFAELGKHTRRAMDDMHPLKVLNLFKEINSVDC 254 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 L+ + GRPE + RYLP PPLCIRP+V + + S EDD+T KL EIV + L + Sbjct: 255 ELLGLDPAEGRPEMFLWRYLPAPPLCIRPSVAQE--SASNEDDITTKLAEIVIYSAHLRE 312 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 ++ G P LM+ E+LQ++ ++NSD L K RG QRL Sbjct: 313 AMLKGAPLPSLMEQWEFLQLQVGMYVNSDVPGLVQ-QGFGKVTRGFCQRL 361 [97][TOP] >UniRef100_Q2GTS6 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum RepID=Q2GTS6_CHAGB Length = 1290 Score = 108 bits (270), Expect = 3e-22 Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 2/169 (1%) Frame = +1 Query: 52 PTKTELREQAKSAAME--SAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225 P L++ A + +E +++ AK+ +LE+H + +DLNPL+ L LF A++ D Sbjct: 62 PLDPRLKKIAPESKVEFDASFNQAKKYTPELEKHTRKAMEDLNPLKVLNLFRAISQTDCE 121 Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405 L+ + GRP+ + +YLP PP+CIRP+V + + S EDD+T KL+EI+ L +S Sbjct: 122 LLGLDPSEGRPDMFLWQYLPAPPICIRPSVAQENA--SNEDDITSKLSEIILYAGHLRES 179 Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + G ++M+ E+LQ++ ++NSD L KP+RG QRL Sbjct: 180 LKKGVALPVIMEQWEFLQLQVGMYVNSDVPGLYQ-PGFGKPIRGFCQRL 227 [98][TOP] >UniRef100_Q4P157 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis RepID=Q4P157_USTMA Length = 1400 Score = 107 bits (266), Expect = 8e-22 Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 3/148 (2%) Frame = +1 Query: 118 KRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPL 297 K N D+ HL++ +DLNPL+ L LF+ ++ ED L+ +R GRPE I +Y+ VPP+ Sbjct: 199 KMGNGDISPHLNKAQEDLNPLKALDLFKRISDEDCELLGLRPEFGRPEEYIWQYICVPPV 258 Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVL---LMDGXEWLQVEA 468 CIRP+V D + EDD+T+KLTEI+ N L + GG L+ E+LQ+ Sbjct: 259 CIRPSVAQD--GATNEDDVTIKLTEIIFTNSLLKLGLVKGGKGTTTSQLVQQWEFLQLTV 316 Query: 469 ARFMNSDATNLPPLASTAKPLRGISQRL 552 A ++NS+ +P KP RG QRL Sbjct: 317 ALYINSELPGVPTQPG-QKPSRGFCQRL 343 [99][TOP] >UniRef100_B4L5G1 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis RepID=B4L5G1_DROMO Length = 1382 Score = 106 bits (264), Expect = 1e-21 Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 2/184 (1%) Frame = +1 Query: 7 GGGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSR--VGDDLNPL 180 GG + + + P K ++ ++ ME + N DL LS ++L PL Sbjct: 162 GGVKKGPGLLKILHDPYKGRKKDATFTSHMEEMLRSTELNR-DLNLTLSNYSAAEELTPL 220 Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360 L LFE + D+AL+ M + G P+ LI+ + VPP CIRP+V S+ AG+TEDDLTM Sbjct: 221 MVLDLFEQIPQSDIALLGMCSRGAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTM 280 Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGI 540 K +EI+ +N+ + + + GG L+ + ++LQ+ A + +S+ + +P + K RGI Sbjct: 281 KQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGI 340 Query: 541 SQRL 552 QRL Sbjct: 341 VQRL 344 [100][TOP] >UniRef100_B4MT76 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni RepID=B4MT76_DROWI Length = 1381 Score = 105 bits (263), Expect = 2e-21 Identities = 58/144 (40%), Positives = 88/144 (61%), Gaps = 2/144 (1%) Frame = +1 Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300 N DL LS ++L PL L LFE + +DV L+ M + G P+ LI+ + VPP C Sbjct: 201 NRDLNLTLSNYSTAEELTPLMVLDLFEQIPQKDVPLLGMCSRGAHPKHLIVTRVFVPPAC 260 Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480 IRP+V SD AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A + Sbjct: 261 IRPSVLSDVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320 Query: 481 NSDATNLPPLASTAKPLRGISQRL 552 +S+ + +P + K +RGI QRL Sbjct: 321 HSEISGIPLNMAPKKTMRGIVQRL 344 [101][TOP] >UniRef100_B4JN80 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi RepID=B4JN80_DROGR Length = 1303 Score = 105 bits (263), Expect = 2e-21 Identities = 58/144 (40%), Positives = 88/144 (61%), Gaps = 2/144 (1%) Frame = +1 Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300 N DL + LS ++L PL L LFE + DVAL+ M + G P+ LI+ + VPP C Sbjct: 201 NRDLNQTLSNYSAAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPAC 260 Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480 IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A + Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320 Query: 481 NSDATNLPPLASTAKPLRGISQRL 552 +S+ + +P + K RGI QRL Sbjct: 321 HSEISGIPLNMAPKKTTRGIVQRL 344 [102][TOP] >UniRef100_C5KZ53 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KZ53_9ALVE Length = 1719 Score = 105 bits (262), Expect = 2e-21 Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 1/162 (0%) Frame = +1 Query: 70 REQAKSAAMESAYGDAKRNNADLERHLSRVG-DDLNPLRTLALFEAMTAEDVALIDMRAV 246 ++QAK + Y DA NN ++ HLS+V +DL PL L L M D ++ + Sbjct: 159 KDQAK-VEYQQQYSDAVNNNPEIGNHLSKVAYEDLTPLHLLPLLAKMPPSDQEMLKLPP- 216 Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426 +PERL++ ++PV P+CIRP+V AG+ EDDL+++ ++IV N + +++ GG Sbjct: 217 --QPERLVVTHVPVSPVCIRPSV-QIGDAGTQEDDLSVQTSDIVATNNNIKATLSRGGTL 273 Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + + +WL + A MNS+AT L A T KP+R I RL Sbjct: 274 KQVAEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRL 315 [103][TOP] >UniRef100_B4MAW8 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis RepID=B4MAW8_DROVI Length = 1044 Score = 105 bits (262), Expect = 2e-21 Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 2/184 (1%) Frame = +1 Query: 7 GGGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSR--VGDDLNPL 180 GG + + + P K ++ ++ M+ + N DL LS ++L PL Sbjct: 162 GGVKKGPGLLKILHDPYKGRKKDAVFTSHMDQMLRSTELNR-DLNLTLSNYSAAEELTPL 220 Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360 L LFE + DVAL+ M + G P+ LI+ + VPP CIRP+V S+ AG+TEDDLTM Sbjct: 221 MVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTM 280 Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGI 540 K +EI+ +N+ + + + GG L+ + ++LQ+ A + +S+ + +P + K RGI Sbjct: 281 KQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGI 340 Query: 541 SQRL 552 QRL Sbjct: 341 VQRL 344 [104][TOP] >UniRef100_Q29CI9 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q29CI9_DROPS Length = 644 Score = 105 bits (261), Expect = 3e-21 Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%) Frame = +1 Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300 N DL LS ++L PL L LFE + DVAL+ M + G P+ LI+ + VPP C Sbjct: 201 NRDLNLTLSNYSTAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPAC 260 Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480 IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A + Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIYEDWDFLQLHVALYF 320 Query: 481 NSDATNLPPLASTAKPLRGISQRL 552 +S+ + +P + K RGI QRL Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344 [105][TOP] >UniRef100_C5KF34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KF34_9ALVE Length = 465 Score = 105 bits (261), Expect = 3e-21 Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 1/162 (0%) Frame = +1 Query: 70 REQAKSAAMESAYGDAKRNNADLERHLSRVG-DDLNPLRTLALFEAMTAEDVALIDMRAV 246 ++QAK + Y DA NN ++ HLS+V +DL PL L L M D ++ + Sbjct: 68 KDQAK-VEYQQQYSDAVSNNPEIGNHLSKVAYEDLTPLHLLPLLAKMPPSDQEMLKLPP- 125 Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426 +PERL++ ++PV P+CIRP+V AG+ EDDL+++ ++IV N + +++ GG Sbjct: 126 --QPERLVVTHVPVSPVCIRPSV-QIGDAGTQEDDLSVQTSDIVATNNNIKATLSRGGTL 182 Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + + +WL + A MNS+AT L A T KP+R I RL Sbjct: 183 KQVAEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRL 224 [106][TOP] >UniRef100_B4HCC5 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis RepID=B4HCC5_DROPE Length = 968 Score = 105 bits (261), Expect = 3e-21 Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%) Frame = +1 Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300 N DL LS ++L PL L LFE + DVAL+ M + G P+ LI+ + VPP C Sbjct: 201 NRDLNLTLSNYSTAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPAC 260 Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480 IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A + Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIYEDWDFLQLHVALYF 320 Query: 481 NSDATNLPPLASTAKPLRGISQRL 552 +S+ + +P + K RGI QRL Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344 [107][TOP] >UniRef100_B0DK21 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0DK21_LACBS Length = 1397 Score = 105 bits (261), Expect = 3e-21 Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 1/169 (0%) Frame = +1 Query: 49 KPTKTELREQAKSAAMESAYGDAKRNNADLERHLSR-VGDDLNPLRTLALFEAMTAEDVA 225 K T EL K+ + A +L ++++ V +DLN L+ L LF ++ ED Sbjct: 179 KKTADELERWKKT------FAPALEAQKELAMYINKAVHEDLNALKVLDLFRRISDEDCE 232 Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405 L+ + GRPE+ I +YL VPP+CIRP+V D S EDDLT+KLTEIV N + + Sbjct: 233 LLGLHPDWGRPEQFIWQYLSVPPVCIRPSVAQD--GASNEDDLTVKLTEIVFTNALIRQG 290 Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + G P M+ E+LQ+ A ++NS+ +P KP+RG QRL Sbjct: 291 LAKGSPTPQFMEQWEFLQLSVAMYINSELPGVPSQPG-QKPIRGFVQRL 338 [108][TOP] >UniRef100_B3MLS5 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae RepID=B3MLS5_DROAN Length = 1301 Score = 104 bits (260), Expect = 4e-21 Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%) Frame = +1 Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300 N DL LS ++L PL L LFE + DVAL+ M + G P+ LI+ + VPP C Sbjct: 201 NRDLNATLSSYSTAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKNLIVTRVFVPPAC 260 Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480 IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A + Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320 Query: 481 NSDATNLPPLASTAKPLRGISQRL 552 +S+ + +P + K RGI QRL Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344 [109][TOP] >UniRef100_Q16SE0 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti RepID=Q16SE0_AEDAE Length = 1298 Score = 102 bits (255), Expect = 1e-20 Identities = 52/129 (40%), Positives = 81/129 (62%) Frame = +1 Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345 +LNP+ L LF+ + D+ L+ M + P LI+ + VPP+CIRP+V S+ AG+TE Sbjct: 219 ELNPVEVLDLFKNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTE 278 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525 DDLTMK +EI+ +++ +AK + GG L+ + ++LQ+ A + NS+ + +P K Sbjct: 279 DDLTMKQSEILLISDVIAKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKK 338 Query: 526 PLRGISQRL 552 P RGI QRL Sbjct: 339 PTRGIVQRL 347 [110][TOP] >UniRef100_Q16PD2 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti RepID=Q16PD2_AEDAE Length = 1298 Score = 102 bits (255), Expect = 1e-20 Identities = 52/129 (40%), Positives = 81/129 (62%) Frame = +1 Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345 +LNP+ L LF+ + D+ L+ M + P LI+ + VPP+CIRP+V S+ AG+TE Sbjct: 219 ELNPVEVLDLFKNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTE 278 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525 DDLTMK +EI+ +++ +AK + GG L+ + ++LQ+ A + NS+ + +P K Sbjct: 279 DDLTMKQSEILLISDVIAKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKK 338 Query: 526 PLRGISQRL 552 P RGI QRL Sbjct: 339 PTRGIVQRL 347 [111][TOP] >UniRef100_B0WFY1 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus RepID=B0WFY1_CULQU Length = 1303 Score = 102 bits (254), Expect = 2e-20 Identities = 52/129 (40%), Positives = 80/129 (62%) Frame = +1 Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345 +LNPL L LF+ + D+ L+ M + P LI+ + VPP+CIRP+V S+ AG+TE Sbjct: 219 ELNPLEVLDLFKNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTE 278 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525 DDLTMK +EI+ +++ + K + GG L+ + ++LQ+ A + NS+ + +P K Sbjct: 279 DDLTMKQSEILLISDVITKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKK 338 Query: 526 PLRGISQRL 552 P RGI QRL Sbjct: 339 PTRGIVQRL 347 [112][TOP] >UniRef100_UPI000186E437 DNA-directed RNA polymerase III largest subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E437 Length = 1364 Score = 102 bits (253), Expect = 2e-20 Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Frame = +1 Query: 103 AYGDAKRNNADLERHL-SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRY 279 AY + + +LE + S V L PL L L E + +DV L+ M P L+L Sbjct: 196 AYNNVLEYDRELESVIASGVAFILTPLDVLNLLERIPEDDVCLLCMNPAMVHPRDLMLTR 255 Query: 280 LPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQ 459 LPVPPLC+RP+V S+ +G+ EDDLTMKL+EI+ +N+ + K G ++ + ++LQ Sbjct: 256 LPVPPLCVRPSVISELKSGTNEDDLTMKLSEIIFINDVIQKHRQSGAKVHMINEDWDFLQ 315 Query: 460 VEAARFMNSDATNLPPLASTAKPLRGISQRL 552 + A ++NS+ T +P K RG+ QRL Sbjct: 316 LHCALYINSETTGIPLSMQPKKATRGLVQRL 346 [113][TOP] >UniRef100_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C4M1_THAPS Length = 1422 Score = 102 bits (253), Expect = 2e-20 Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 7/174 (4%) Frame = +1 Query: 52 PTKTELREQAKSAAMESAYGD-------AKRNNADLERHLSRVGDDLNPLRTLALFEAMT 210 PT + E+ K ME D A N ++ L +DL P R L LF+ MT Sbjct: 195 PTLKIIHERYKGRHMEDEVEDLLQSLQGAMITNLEINHALRVAVEDLLPTRVLELFKGMT 254 Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390 +D ++ + GRPE LIL ++ VPP+ IRP+V D GS EDDLT+KL E++++N Sbjct: 255 DDDCEVLWVAPWIGRPENLILEHILVPPVPIRPSVAMDVGGGSNEDDLTVKLLEVINVNV 314 Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 AL ++ +M+G + LQ + A+++N D L KP+RG+ QRL Sbjct: 315 ALELNMTRNPQTKTIMEGWDVLQSQVAQYINGDMPGLKK-EMGHKPIRGLCQRL 367 [114][TOP] >UniRef100_A9UN86 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila melanogaster RepID=A9UN86_DROME Length = 1410 Score = 101 bits (251), Expect = 4e-20 Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%) Frame = +1 Query: 121 RNNADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294 + N DL L ++L PL L LFE + DVAL+ M + P+ LI+ + VPP Sbjct: 226 QTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPP 285 Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474 CIRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A Sbjct: 286 ACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVAL 345 Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552 + +S+ + +P + K RGI QRL Sbjct: 346 YFHSEISGIPINMAPKKTTRGIVQRL 371 [115][TOP] >UniRef100_A8PJK8 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PJK8_BRUMA Length = 1404 Score = 101 bits (251), Expect = 4e-20 Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 3/154 (1%) Frame = +1 Query: 100 SAYGDAKRNNADLERHLSRVGDDL-NPLRTLALFEAMTAEDVALIDMRAVGG--RPERLI 270 S Y A + N +L+ L + L +PL+ LF + ED+ L+ +R+ P +I Sbjct: 189 SEYVYAAQENKELQNLLPKTKFTLLDPLQVQILFNKIEKEDIPLLMVRSADTPKHPSDVI 248 Query: 271 LRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXE 450 L +PVPP CIRP+V S+ +G+TEDD+TMKL+EI+ +N+ + K G P + + + Sbjct: 249 LTRIPVPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLINDVIEKHKKEGSPTKTISETWD 308 Query: 451 WLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 LQV+ A ++NS+ + LPP + RG +QRL Sbjct: 309 HLQVQCALYINSELSGLPPDMQPKRTTRGFTQRL 342 [116][TOP] >UniRef100_A8JUY3 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster RepID=A8JUY3_DROME Length = 1376 Score = 101 bits (251), Expect = 4e-20 Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%) Frame = +1 Query: 121 RNNADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294 + N DL L ++L PL L LFE + DVAL+ M + P+ LI+ + VPP Sbjct: 199 QTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPP 258 Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474 CIRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A Sbjct: 259 ACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVAL 318 Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552 + +S+ + +P + K RGI QRL Sbjct: 319 YFHSEISGIPINMAPKKTTRGIVQRL 344 [117][TOP] >UniRef100_B4PX62 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba RepID=B4PX62_DROYA Length = 1383 Score = 100 bits (250), Expect = 6e-20 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 2/144 (1%) Frame = +1 Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300 N DL L ++L PL L LFE + DVAL+ M + P+ LI+ + VPP C Sbjct: 201 NRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPAC 260 Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480 IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A + Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320 Query: 481 NSDATNLPPLASTAKPLRGISQRL 552 +S+ + +P + K RGI QRL Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344 [118][TOP] >UniRef100_B3NXK5 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta RepID=B3NXK5_DROER Length = 1383 Score = 100 bits (250), Expect = 6e-20 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 2/144 (1%) Frame = +1 Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300 N DL L ++L PL L LFE + DVAL+ M + P+ LI+ + VPP C Sbjct: 201 NRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPAC 260 Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480 IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A + Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320 Query: 481 NSDATNLPPLASTAKPLRGISQRL 552 +S+ + +P + K RGI QRL Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344 [119][TOP] >UniRef100_Q7RXJ6 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa RepID=Q7RXJ6_NEUCR Length = 1474 Score = 100 bits (248), Expect = 9e-20 Identities = 53/141 (37%), Positives = 82/141 (58%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 + K T + AA +S++ AK DLE+H + DD++PL+ L LF+ +TAED Sbjct: 188 FNKSTAQKKVPPVAKAAFDSSFIQAKTFTPDLEKHSKKAMDDMDPLKVLKLFKKITAEDC 247 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 L+ + GRPE + +YLP PP+CIRP+V A S EDD+T KL+EI+ L + Sbjct: 248 ELLGLNPSEGRPEMFLWQYLPAPPICIRPSV--QQEAASNEDDITSKLSEIILYAGHLRE 305 Query: 403 SINLGGPAVLLMDGXEWLQVE 465 S+ G +M+ E++Q++ Sbjct: 306 SLLKGAALNTIMEQWEFIQLQ 326 [120][TOP] >UniRef100_Q7PMU6 DNA-directed RNA polymerase n=1 Tax=Anopheles gambiae RepID=Q7PMU6_ANOGA Length = 1379 Score = 97.8 bits (242), Expect = 5e-19 Identities = 51/134 (38%), Positives = 79/134 (58%) Frame = +1 Query: 151 SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPS 330 S + +LN + L LF + DV L+ M + P LI+ + VPP+CIRP+V S+ Sbjct: 215 SSLSKELNAVEVLDLFRNIPKSDVPLLGMTSTYSNPADLIVTRVFVPPVCIRPSVVSEVK 274 Query: 331 AGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL 510 AG+TEDDLTMK +EI+ +++ + K + G L+ + ++LQ+ A + NS+ + +P Sbjct: 275 AGTTEDDLTMKQSEILLISDVITKHMMTNGKIELIQEDWDYLQLHCALYFNSELSGIPLS 334 Query: 511 ASTAKPLRGISQRL 552 KP RGI QRL Sbjct: 335 LMPKKPTRGIVQRL 348 [121][TOP] >UniRef100_B8MLB5 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MLB5_TALSN Length = 1441 Score = 97.8 bits (242), Expect = 5e-19 Identities = 54/170 (31%), Positives = 87/170 (51%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 Y + T + +++ +A+ +N D++R + DDL+ LR + LF+ +T D Sbjct: 192 YNQSTAMKKVAPISKIVFDNSLTEARASNPDVDRFYKKAQDDLHALRVMNLFKKITNADC 251 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 L+ + RPE + +Y+P PP CIRP+V D S EDDLT KL +IV N L Sbjct: 252 ELLGLDPTEVRPETFLWQYIPAPPNCIRPSVSQD--GASNEDDLTAKLGDIVQSNITLRN 309 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 ++ G P LM+ +++ ++ A ++N D L KP R + RL Sbjct: 310 NLRKGAPVPTLMECWDYMTLQIAIYINGDVPGLK--GEAGKPTRSLVSRL 357 [122][TOP] >UniRef100_B6QI35 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QI35_PENMQ Length = 1439 Score = 97.8 bits (242), Expect = 5e-19 Identities = 52/152 (34%), Positives = 83/152 (54%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +++ +A+ +N D++R + DDL+ LR + LF+ +T D L+ + RPE + + Sbjct: 209 DNSLAEARASNPDVDRFYKKAQDDLHALRVMNLFKKITNADCELLGLDPTEVRPETFLWQ 268 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 Y+P PP CIRP+V D S EDDLT KL +IV N L ++ G P LM+ +++ Sbjct: 269 YIPAPPNCIRPSVSQD--GASNEDDLTAKLGDIVQSNITLRNNLRKGAPVPTLMECWDYM 326 Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 ++ A ++N D L KP R + RL Sbjct: 327 TLQIAIYINGDVPGLK--GEAGKPTRSLVSRL 356 [123][TOP] >UniRef100_C4M626 DNA-directed RNA polymerase n=1 Tax=Entamoeba histolytica HM-1:IMSS RepID=C4M626_ENTHI Length = 1379 Score = 97.4 bits (241), Expect = 6e-19 Identities = 55/170 (32%), Positives = 88/170 (51%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 ++ PT TE+ E + ++ + + D+ ++ +DL+P + L++F ++ ED+ Sbjct: 199 HRDPTITEMNE------FYDGFEESIKLDKDINAFINNAQEDLDPRKVLSIFRSLIREDI 252 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 +D PE +IL +PVPP+ IRP+V D S EDDLT +L EI+ N+ + + Sbjct: 253 ETMDFDPDNAPPENMILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKE 312 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 I G D + L V + F+NS+ LP KPLR I QRL Sbjct: 313 MIKRGASPYQYYDSWDQLTVAVSMFINSE---LPGCDDKGKPLRAICQRL 359 [124][TOP] >UniRef100_UPI000022105F Hypothetical protein CBG05787 n=1 Tax=Caenorhabditis briggsae AF16 RepID=UPI000022105F Length = 1402 Score = 97.1 bits (240), Expect = 8e-19 Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGR-PERLILRYLPVPPLCIRPTVCSDPSAGSTE 345 LNPL LF + D+ ++ +R+ + P L+L +PVPP+CIRP+V S+ +G+TE Sbjct: 213 LNPLFVQKLFANIKEADIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKSGTTE 272 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525 DD+TMKL EI+ N+ L K G PA L + E LQ++ A ++NS+ + LPP + Sbjct: 273 DDVTMKLMEIMLTNDVLKKHKRDGAPAKTLFETWEHLQIQCALYINSEMSGLPPDMQPKR 332 Query: 526 PLRGISQRL 552 +R +QRL Sbjct: 333 AMRAFTQRL 341 [125][TOP] >UniRef100_Q18566 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis elegans RepID=Q18566_CAEEL Length = 1400 Score = 97.1 bits (240), Expect = 8e-19 Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGR-PERLILRYLPVPPLCIRPTVCSDPSAGSTE 345 LNPL LF + D+ ++ +R+ + P L+L +PVPP+CIRP+V S+ AG+TE Sbjct: 213 LNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTE 272 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525 DD+TMKL EI+ N+ L K G P+ L + E LQ++ A ++NS+ + LPP + Sbjct: 273 DDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKR 332 Query: 526 PLRGISQRL 552 +R +QRL Sbjct: 333 AMRAFTQRL 341 [126][TOP] >UniRef100_UPI00015B5AFA PREDICTED: hypothetical protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B5AFA Length = 1372 Score = 95.9 bits (237), Expect = 2e-18 Identities = 60/170 (35%), Positives = 88/170 (51%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 YK ++ Q K A D K + L+ L + LNPL + L E + D+ Sbjct: 168 YKNKKPSDPIVQTKLAEYHKVVEDNKELESILQSGLISI---LNPLEVIGLLERIPERDI 224 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 L+ M P LIL +PVPP+ IRP++ SD AG+ ED+LTMKL+EI+ +NEA+ Sbjct: 225 PLLLMNPQCSVPRDLILTRIPVPPISIRPSIVSDLKAGTNEDNLTMKLSEILLINEAIQI 284 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 G + E+LQ+ A ++NS+ + +PP K RG+ QRL Sbjct: 285 HRQRGLKIQNYTEDWEFLQLHVALYINSEMSGIPPSMQPQKAGRGLVQRL 334 [127][TOP] >UniRef100_B4H9Z6 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis RepID=B4H9Z6_DROPE Length = 424 Score = 95.9 bits (237), Expect = 2e-18 Identities = 50/122 (40%), Positives = 77/122 (63%) Frame = +1 Query: 187 LALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKL 366 L LFE + DVAL+ M + G P+ LI+ + VPP CIRP+V S+ AG+TEDDLTMK Sbjct: 3 LDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQ 62 Query: 367 TEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQ 546 +EI+ +N+ + + + GG L+ + ++LQ+ A + +S+ + +P + K RGI Q Sbjct: 63 SEILLINDVIQRHMATGGKIELIYEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQ 122 Query: 547 RL 552 RL Sbjct: 123 RL 124 [128][TOP] >UniRef100_UPI0000D57400 PREDICTED: similar to AGAP004703-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D57400 Length = 1390 Score = 95.1 bits (235), Expect = 3e-18 Identities = 50/134 (37%), Positives = 79/134 (58%) Frame = +1 Query: 151 SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPS 330 S V L P+ L LFE + D+ L+ M + +P+ LI + VPP+ IRP+V SD Sbjct: 222 SAVSQILTPIDVLKLFERIPQSDIPLLAMDSRRSQPKDLIFTRMLVPPVSIRPSVVSDLK 281 Query: 331 AGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL 510 AG+ EDDLTM+ +EI+ +N+ + K G + +G ++LQ++ A ++NS+ + +P Sbjct: 282 AGTNEDDLTMRQSEIIFINDVIKKHKLSGASVNMYQEGWDFLQLQTALYINSELSGIPLA 341 Query: 511 ASTAKPLRGISQRL 552 KP RG+ QRL Sbjct: 342 MMPKKPGRGLVQRL 355 [129][TOP] >UniRef100_B7G2E6 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2E6_PHATR Length = 1281 Score = 94.7 bits (234), Expect = 4e-18 Identities = 53/131 (40%), Positives = 83/131 (63%), Gaps = 1/131 (0%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 +DL P R L +F ++ +D ++ + + GRPE LIL+ + VPP+ IRP+V D GS Sbjct: 176 EDLLPTRALEIFTHISDDDCEVLWIDPLIGRPETLILQSILVPPVPIRPSVAMDVGGGSN 235 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLAST 519 EDDLT+KL EI+ +N AL ++ G +M+ ++LQV+ A+++N + L P+ S Sbjct: 236 EDDLTVKLQEIIDVNVALELALMKGPQTRTIMEEWDFLQVQVAQYINGEMPGLQRPIGS- 294 Query: 520 AKPLRGISQRL 552 KP+RG+ QRL Sbjct: 295 -KPMRGLCQRL 304 [130][TOP] >UniRef100_B0EG66 DNA-directed RNA polymerase n=1 Tax=Entamoeba dispar SAW760 RepID=B0EG66_ENTDI Length = 1379 Score = 94.7 bits (234), Expect = 4e-18 Identities = 54/170 (31%), Positives = 86/170 (50%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222 ++ T TE+ E + ++ + + D+ + +DL+P + L++F ++ ED+ Sbjct: 199 HRDATITEMNE------FYDGFEESIKLDKDINAFVDNAQEDLDPRKVLSIFRSLIREDI 252 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 +D PE +IL +PVPP+ IRP+V D S EDDLT +L EI+ N+ + + Sbjct: 253 ETMDFDPDNAPPENMILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKE 312 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 I G D + L + + F+NSD LP KPLR I QRL Sbjct: 313 MIKRGASPYQYYDSWDQLTIAVSMFINSD---LPGCDDKGKPLRSICQRL 359 [131][TOP] >UniRef100_UPI00019836CE PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI00019836CE Length = 1383 Score = 94.0 bits (232), Expect = 7e-18 Identities = 50/132 (37%), Positives = 78/132 (59%) Frame = +1 Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336 V D LNP++ L+LF+ M ED L+++ RPE+L+L + VPP+ IRP+V D Sbjct: 216 VVDILNPVKVLSLFKRMMDEDCDLLNLAE---RPEKLVLTNIGVPPIAIRPSVFMDGGTQ 272 Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516 S E+D+T +L I+ N +L + + G + G ++LQ+E A+++NSD +P Sbjct: 273 SNENDVTERLKRIIQANASLHQELQDTGSTSKCLAGWDYLQIEVAQYINSDVRGVPLAMQ 332 Query: 517 TAKPLRGISQRL 552 A+PL G QRL Sbjct: 333 AARPLSGFVQRL 344 [132][TOP] >UniRef100_A7NZA4 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NZA4_VITVI Length = 1370 Score = 94.0 bits (232), Expect = 7e-18 Identities = 50/132 (37%), Positives = 78/132 (59%) Frame = +1 Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336 V D LNP++ L+LF+ M ED L+++ RPE+L+L + VPP+ IRP+V D Sbjct: 216 VVDILNPVKVLSLFKRMMDEDCDLLNLAE---RPEKLVLTNIGVPPIAIRPSVFMDGGTQ 272 Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516 S E+D+T +L I+ N +L + + G + G ++LQ+E A+++NSD +P Sbjct: 273 SNENDVTERLKRIIQANASLHQELQDTGSTSKCLAGWDYLQIEVAQYINSDVRGVPLAMQ 332 Query: 517 TAKPLRGISQRL 552 A+PL G QRL Sbjct: 333 AARPLSGFVQRL 344 [133][TOP] >UniRef100_A9RSV5 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA Length = 1397 Score = 93.6 bits (231), Expect = 9e-18 Identities = 56/149 (37%), Positives = 92/149 (61%), Gaps = 2/149 (1%) Frame = +1 Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291 DA + +L+ ++RV D+L+P+R L LFE+M +D ++D+ RPE+LI+ +L VP Sbjct: 209 DAMKCKPELKNCINRVYDNLDPMRVLQLFESMIEQDCEVLDLAE---RPEKLIVTHLIVP 265 Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471 P+ IRP+V + +AGS EDD+T++L I++ N +L + G A M+ E LQ + + Sbjct: 266 PVAIRPSVEMESAAGSNEDDITVRLLGILNCNNSLRTCVEQGLAAEKTMETWELLQSQVS 325 Query: 472 RFMNSDATNLP--PLASTAKPLRGISQRL 552 + +NS+ T +P ++ K RG QRL Sbjct: 326 QLINSE-TPVPRSEQPTSGKQPRGFVQRL 353 [134][TOP] >UniRef100_UPI00017927B1 PREDICTED: similar to AGAP004703-PA n=1 Tax=Acyrthosiphon pisum RepID=UPI00017927B1 Length = 1355 Score = 93.2 bits (230), Expect = 1e-17 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 1/171 (0%) Frame = +1 Query: 43 YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRV-GDDLNPLRTLALFEAMTAED 219 YKKP ESA D + N ++E + + ++LNP L L ++ ED Sbjct: 186 YKKP----------GTEAESALNDVVKYNKEVESMRNYLFNENLNPQEVLRLLLSIPYED 235 Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399 + L+ M P L++ + VPP CIRP+ SD +G+ EDDLT+KL+E++ +N+ + Sbjct: 236 IILLGMNPEVSNPGWLLMTRMLVPPNCIRPSAVSDIRSGTNEDDLTLKLSEVLFINDVIV 295 Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 K G LL + E+LQ+ A ++NSD + + K RG QRL Sbjct: 296 KHKQSGAKPQLLHEDWEYLQLHCALYINSDLSGVSRTMMPKKIARGCVQRL 346 [135][TOP] >UniRef100_Q8SRM3 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRM3_ENCCU Length = 1349 Score = 90.9 bits (224), Expect = 6e-17 Identities = 51/130 (39%), Positives = 78/130 (60%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 +++NPL L +F M +D L+ P RLI++ + VPP CIRP+V D G+ Sbjct: 232 EEINPLVALNVFNMMKEDDYELLGFLE---SPSRLIIQNVIVPPSCIRPSVSMDDE-GTN 287 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTA 522 EDD+T+K++EIVH N+ L + I G P L+ + + LQ++ A +NS+ LP + Sbjct: 288 EDDITIKISEIVHTNKVLREGIEKGNPLNLINEDWDHLQLQCALLINSE---LPQIGIPG 344 Query: 523 KPLRGISQRL 552 +P+RGI QRL Sbjct: 345 QPVRGIVQRL 354 [136][TOP] >UniRef100_C4V991 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01 RepID=C4V991_NOSCE Length = 1335 Score = 88.6 bits (218), Expect = 3e-16 Identities = 48/129 (37%), Positives = 76/129 (58%) Frame = +1 Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345 D+NP L +F + +ED + + P + I++ + VPP CIRP+V + E Sbjct: 223 DINPQMALNIFSLIKSEDYEFLGLE---DSPVKFIIQNIIVPPACIRPSVGMAEKDSTNE 279 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525 DDLT+K++EI+H NE L +SI+ G ++ D E LQ++ A +NSD LP + ++ Sbjct: 280 DDLTIKISEIIHTNEVLKESIDRGNSINIINDDWESLQLQCALMVNSD---LPQINVQSQ 336 Query: 526 PLRGISQRL 552 P++GI QRL Sbjct: 337 PIKGIVQRL 345 [137][TOP] >UniRef100_B4IKC6 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia RepID=B4IKC6_DROSE Length = 1369 Score = 86.7 bits (213), Expect = 1e-15 Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 2/144 (1%) Frame = +1 Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300 N DL L ++L PL L LFE + DVAL+ M + P+ LI+ + VPP C Sbjct: 201 NRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPAC 260 Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480 IRP+V S+ AG+TEDDLTMK +EI+ +N+ + + + GG L+ + ++LQ+ A + Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYS 320 Query: 481 NSDATNLPPLASTAKPLRGISQRL 552 + RGI QRL Sbjct: 321 TT--------------TRGIVQRL 330 [138][TOP] >UniRef100_A9BK83 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK83_9CRYP Length = 1323 Score = 85.9 bits (211), Expect = 2e-15 Identities = 47/111 (42%), Positives = 67/111 (60%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L+PL +F+ ++ ED L+D ++ P LIL YLPVPPL +RPTV + + ED Sbjct: 200 LDPLGIFKIFQKISREDWELLDFDSIETHPTHLILYYLPVPPLGVRPTVFISETM-TNED 258 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNL 501 DLTMKLTEI +N L + G P + + D LQ+E +++NS+A NL Sbjct: 259 DLTMKLTEIQFLNIQLKINFQTGIPFLAIKDTWSILQIECGKYLNSEAFNL 309 [139][TOP] >UniRef100_UPI0001869927 hypothetical protein BRAFLDRAFT_246077 n=1 Tax=Branchiostoma floridae RepID=UPI0001869927 Length = 313 Score = 85.5 bits (210), Expect = 2e-15 Identities = 42/96 (43%), Positives = 63/96 (65%) Frame = +1 Query: 265 LILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDG 444 +IL L VPPLCIRP+V ++ AG+ EDD+TMKLTEI+ +N+ + K G A ++M+ Sbjct: 2 MILTRLLVPPLCIRPSVSTELKAGTNEDDVTMKLTEILFLNDVIQKHRATGARAQMIMED 61 Query: 445 XEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 ++LQ++ A ++NS+ +P KP RG QRL Sbjct: 62 WDFLQLQCALYINSEQGGIPLNMQPKKPTRGFCQRL 97 [140][TOP] >UniRef100_C5YBD9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor RepID=C5YBD9_SORBI Length = 1391 Score = 85.5 bits (210), Expect = 2e-15 Identities = 50/128 (39%), Positives = 74/128 (57%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L+P L+LF MT ED L+++ G RPE+LI+ + VPP+ IRP+V S S ED Sbjct: 215 LDPATVLSLFRRMTDEDCELLNL---GDRPEKLIVSEIAVPPVPIRPSVVVGSSRTSNED 271 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKP 528 +T+ L IV+ N L ++++ GGP D ++LQ++ ++NSDA LP Sbjct: 272 SITVILKSIVNTNSILKETLHTGGPFTKCFDCWQYLQLQVVEYVNSDAPCLPD-----SQ 326 Query: 529 LRGISQRL 552 RG+ QRL Sbjct: 327 HRGLVQRL 334 [141][TOP] >UniRef100_Q2PYS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Batrachochytrium dendrobatidis RepID=Q2PYS7_BATDE Length = 985 Score = 85.5 bits (210), Expect = 2e-15 Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 1/130 (0%) Frame = +1 Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345 ++ P +TL L +++ +D + + A RPE +I+ LPVPP+ +RP++ D AG E Sbjct: 115 EMTPEKTLTLLRSISDQDATDMGLSADWARPEWMIITTLPVPPMPVRPSISMD-GAGRGE 173 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522 DDLT KL +I+ N +L + G PA ++ + LQ A +MN+D NLP + + Sbjct: 174 DDLTHKLMDIIKANISLKRHETEGAPAHIVNEFENLLQFHVATYMNNDIANLPQAMQKSG 233 Query: 523 KPLRGISQRL 552 +PL+ I+ RL Sbjct: 234 RPLKSIAARL 243 [142][TOP] >UniRef100_Q8TRB7 DNA-directed RNA polymerase n=1 Tax=Methanosarcina acetivorans RepID=Q8TRB7_METAC Length = 880 Score = 85.5 bits (210), Expect = 2e-15 Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%) Frame = +1 Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339 G+ L P FE + ED+ +I M RPE +IL LPVPP+ +RP++ + S Sbjct: 172 GEKLTPTEIRDRFENVPDEDIRVIGMDPKNARPEWMILTVLPVPPVTVRPSITLE-SGQR 230 Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516 +EDDLT KL +I+ +N+ ++ G P +++ D E LQ F ++ + +PP Sbjct: 231 SEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHR 290 Query: 517 TAKPLRGISQRL 552 + +PL+ +SQRL Sbjct: 291 SGRPLKTLSQRL 302 [143][TOP] >UniRef100_Q8PUR1 DNA-directed RNA polymerase n=1 Tax=Methanosarcina mazei RepID=Q8PUR1_METMA Length = 880 Score = 85.1 bits (209), Expect = 3e-15 Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%) Frame = +1 Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339 G+ L P FE + ED+ ++ M RPE +IL LPVPP+ +RP++ + S Sbjct: 172 GEKLTPTEIRDRFENIPDEDIRVVGMDPKNARPEWMILTVLPVPPVTVRPSITLE-SGQR 230 Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516 +EDDLT KL +I+ +N+ ++ G P +++ D E LQ F ++ + +PP Sbjct: 231 SEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHR 290 Query: 517 TAKPLRGISQRL 552 + +PL+ +SQRL Sbjct: 291 SGRPLKTLSQRL 302 [144][TOP] >UniRef100_Q3IUN2 DNA-directed RNA polymerase n=1 Tax=Natronomonas pharaonis DSM 2160 RepID=Q3IUN2_NATPD Length = 1059 Score = 84.7 bits (208), Expect = 4e-15 Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 1/151 (0%) Frame = +1 Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282 A+G N + LS GD L P FE + ED+ + + RPE +IL L Sbjct: 307 AFGGRFENAPAPDFLLSYSGDKLMPSNVRDRFENIPDEDIETLGIDPERSRPEWMILTVL 366 Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462 PVPP+ RP++ D + +EDDLT KL +I+ +N+ ++ G P +++ D E LQ Sbjct: 367 PVPPVTARPSITLD-NGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQY 425 Query: 463 EAARFMNSDATNLPPLA-STAKPLRGISQRL 552 FM+++ + PP + +PL+ +SQRL Sbjct: 426 HVTTFMDNEISGTPPARHRSGRPLKTLSQRL 456 [145][TOP] >UniRef100_A0B558 DNA-directed RNA polymerase n=1 Tax=Methanosaeta thermophila PT RepID=A0B558_METTP Length = 876 Score = 84.7 bits (208), Expect = 4e-15 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 3/152 (1%) Frame = +1 Query: 106 YGDAKRNNADLERHLSRV--GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRY 279 Y A + ER LS + G L P FE ++ ED+ ++ M RPE IL Sbjct: 148 YCGAPQREIKFERPLSYIEDGHKLTPSDIRDRFERISDEDIMVMGMNPETARPEWTILTV 207 Query: 280 LPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQ 459 LPVPP+ +RP++ + S +EDDLT KL +I+ +N+ ++ G P +++ D E LQ Sbjct: 208 LPVPPVTMRPSITLE-SGQRSEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQ 266 Query: 460 VEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 F+++ + +PP + +PL+ +SQRL Sbjct: 267 YHVTTFLDNTVSGVPPARHRSGRPLKTLSQRL 298 [146][TOP] >UniRef100_Q6LXI8 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis RepID=Q6LXI8_METMP Length = 889 Score = 84.3 bits (207), Expect = 5e-15 Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 1/121 (0%) Frame = +1 Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372 + E + AED L+ + A RPE ++L LPVPP+ +RP++ + S +EDDLT KL + Sbjct: 186 ILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244 Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549 I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304 Query: 550 L 552 L Sbjct: 305 L 305 [147][TOP] >UniRef100_Q464Y7 DNA-directed RNA polymerase n=1 Tax=Methanosarcina barkeri str. Fusaro RepID=Q464Y7_METBF Length = 880 Score = 84.3 bits (207), Expect = 5e-15 Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%) Frame = +1 Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339 G+ L P FE + +D+ +I M RPE +IL LPVPP+ +RP++ + S Sbjct: 172 GEKLTPTEIRDRFENIPDDDIRVIGMDPKNARPEWMILTVLPVPPVTVRPSITLE-SGQR 230 Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516 +EDDLT KL +I+ +N+ ++ G P +++ D E LQ F ++ + +PP Sbjct: 231 SEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHR 290 Query: 517 TAKPLRGISQRL 552 + +PL+ +SQRL Sbjct: 291 SGRPLKTLSQRL 302 [148][TOP] >UniRef100_A4FWF6 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C5 RepID=A4FWF6_METM5 Length = 889 Score = 84.3 bits (207), Expect = 5e-15 Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 1/121 (0%) Frame = +1 Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372 + E + AED L+ + A RPE ++L LPVPP+ +RP++ + S +EDDLT KL + Sbjct: 186 ILEKIPAEDCRLLGINAKVARPEFMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244 Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549 I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304 Query: 550 L 552 L Sbjct: 305 L 305 [149][TOP] >UniRef100_P11512 DNA-directed RNA polymerase subunit A' n=1 Tax=Sulfolobus acidocaldarius RepID=RPOA1_SULAC Length = 880 Score = 84.0 bits (206), Expect = 7e-15 Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 1/146 (0%) Frame = +1 Query: 118 KRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPL 297 K N + ER+ S V L+P E + DV L+ RPE +IL LPVPP+ Sbjct: 160 KPYNFNEERNGSIV--KLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPI 217 Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477 IRP++ + S EDDLT KL +I+ +NE L +SI G P +++ D + LQ A + Sbjct: 218 TIRPSITIE-SGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATY 276 Query: 478 MNSDATNLPPLA-STAKPLRGISQRL 552 +++ LPP + +PLR ++QRL Sbjct: 277 FDNEIPGLPPAKHRSGRPLRTLAQRL 302 [150][TOP] >UniRef100_Q980R2 DNA-directed RNA polymerase subunit A' n=2 Tax=Sulfolobus solfataricus RepID=RPOA1_SULSO Length = 880 Score = 83.6 bits (205), Expect = 9e-15 Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 1/178 (0%) Frame = +1 Query: 22 AARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFE 201 AAR + Y K KT ++ Q E Y + L P E Sbjct: 128 AARRLTEYVK--KTAMKAQVCPHCNEKQYKIKLEKPYNFYEERKEGVAKLTPSDIRERLE 185 Query: 202 AMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVH 381 + DV ++ RPE +IL LPVPP+ IRP++ + S EDDLT KL +IV Sbjct: 186 KIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAEDDLTHKLVDIVR 244 Query: 382 MNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +NE L +SI+ G P +++ D + LQ A + +++ LPP + +PLR ++QRL Sbjct: 245 INERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRL 302 [151][TOP] >UniRef100_C0SHD3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SHD3_PARBP Length = 1449 Score = 83.2 bits (204), Expect = 1e-14 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Frame = +1 Query: 97 ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 + ++ +AK++N ++E+H + DDL+PLR L LF ++ ED L+ + LR Sbjct: 211 DRSFEEAKKSNPEIEKHFKKAHDDLHPLRVLKLFRRISNEDCELLGLN----------LR 260 Query: 277 YLP--VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXE 450 L V + C A STEDDLT KL +I+ N L ++N G P +++ + Sbjct: 261 KLDRGVSVAVYSRSACE---AASTEDDLTAKLGDIIQSNMNLKNALNKGAPVQTIIECWD 317 Query: 451 WLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552 +Q++ A ++NSD L A KP+RG QRL Sbjct: 318 HMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 350 [152][TOP] >UniRef100_Q5UZR4 DNA-directed RNA polymerase n=1 Tax=Haloarcula marismortui RepID=Q5UZR4_HALMA Length = 969 Score = 83.2 bits (204), Expect = 1e-14 Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 12/175 (6%) Frame = +1 Query: 64 ELREQA---KSAAMESAYGDAKRNNAD---LERHLS--RVGDDLNPLRTLAL---FEAMT 210 EL E+ S E G+ + D LE+ LS +D+N L + FE + Sbjct: 197 ELSEETGIDSSRVQEILSGEFRPRQEDRKALEKALSVDLTEEDMNKLMPSDIRDWFEDIP 256 Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390 ED+ ++ M+ RPE +IL LPVPP+ RP++ D S EDDLT KL +I+ +N+ Sbjct: 257 DEDIEVLGMKPARSRPEWMILTVLPVPPVTARPSITLDNGQRS-EDDLTHKLVDIIRINQ 315 Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 ++ G P +++ D E LQ FM+++ + PP + +PL+ +SQRL Sbjct: 316 RFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 370 [153][TOP] >UniRef100_A6VGU9 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C7 RepID=A6VGU9_METM7 Length = 889 Score = 83.2 bits (204), Expect = 1e-14 Identities = 43/121 (35%), Positives = 74/121 (61%), Gaps = 1/121 (0%) Frame = +1 Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372 + E + ED L+ + A RPE ++L LPVPP+ +RP++ + S +EDDLT KL + Sbjct: 186 ILEKIPGEDCKLLGINAKVARPEYMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244 Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549 I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304 Query: 550 L 552 L Sbjct: 305 L 305 [154][TOP] >UniRef100_P09846 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanothermobacter thermautotrophicus str. Winter RepID=RPOA1_METTW Length = 865 Score = 83.2 bits (204), Expect = 1e-14 Identities = 51/174 (29%), Positives = 93/174 (53%), Gaps = 13/174 (7%) Frame = +1 Query: 70 REQAKSAAMESAYGDAKRNNAD----------LERHLSRVGDD--LNPLRTLALFEAMTA 213 RE++ + ++ Y +A+R+ L++ +S V D L P E +T Sbjct: 126 REESLTPIIKEIYAEARRDRCPHCEEEQEEIKLDKPVSIVEGDYKLTPSEVRERLERITD 185 Query: 214 EDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEA 393 D L+ + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+ +N+ Sbjct: 186 NDSLLLGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-EDDLTHKLVDILRINQR 244 Query: 394 LAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 L +++ G P +++ D E LQ + +++A+ +PP + +PL+ ++QRL Sbjct: 245 LKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 298 [155][TOP] >UniRef100_B6AIF4 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIF4_9CRYT Length = 1803 Score = 82.8 bits (203), Expect = 2e-14 Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 3/133 (2%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 +DL PL L + + ED+ +++M +P+RL+L LPVPP CIRP+V AGS Sbjct: 215 EDLTPLFVQTLLQKVPYEDLDILEMF----KPDRLLLSRLPVPPNCIRPSVTMG-EAGSN 269 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519 EDDLT+ L+EI +N + + G + L+ E+LQ++ R +N++A + L ++ Sbjct: 270 EDDLTVILSEITDLNNMIKSQMKSGFQTLQLLGNWEFLQLQCTRLINAEAPGVNQLLASK 329 Query: 520 --AKPLRGISQRL 552 K RGI QRL Sbjct: 330 NIPKAGRGICQRL 342 [156][TOP] >UniRef100_A3DMP4 DNA-directed RNA polymerase n=1 Tax=Staphylothermus marinus F1 RepID=A3DMP4_STAMF Length = 886 Score = 82.8 bits (203), Expect = 2e-14 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 LNP+ A E + EDV L+ + RPE ++L LPVPP +RP++ + S ED Sbjct: 180 LNPIEVRARLEKILDEDVRLLGGDPIDARPEWMVLTVLPVPPRSVRPSILLETGIRS-ED 238 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +I+ +N L + I G P ++ D E LQ + +++A +P + K Sbjct: 239 DLTHKLVDIIRINNRLREHIESGAPNAIIEDEWELLQYHVTTYFDNEAPGIPVARHRSGK 298 Query: 526 PLRGISQRL 552 L+G++QRL Sbjct: 299 VLKGLAQRL 307 [157][TOP] >UniRef100_C7NYI6 DNA-directed RNA polymerase subunit A' n=1 Tax=Halomicrobium mukohataei DSM 12286 RepID=C7NYI6_HALMD Length = 972 Score = 82.8 bits (203), Expect = 2e-14 Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 1/120 (0%) Frame = +1 Query: 196 FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEI 375 FE + EDV ++ M+ RPE +IL LPVPP+ RP++ D + +EDDLT KL +I Sbjct: 256 FEDIPDEDVEVLGMKPARSRPEWMILTVLPVPPVTARPSITLD-NGQRSEDDLTHKLVDI 314 Query: 376 VHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 + +N+ ++ G P +++ D E LQ FM+++ + PP + +PL+ +SQRL Sbjct: 315 IRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 374 [158][TOP] >UniRef100_A8TEB8 DNA-directed RNA polymerase n=1 Tax=Methanococcus voltae A3 RepID=A8TEB8_METVO Length = 888 Score = 82.8 bits (203), Expect = 2e-14 Identities = 43/121 (35%), Positives = 74/121 (61%), Gaps = 1/121 (0%) Frame = +1 Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372 + E + A D L+ + + RPE +IL LPVPP+ +RP++ + S +EDDLT KL + Sbjct: 186 ILEKIPANDCKLLGINHIVARPEYMILTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244 Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549 I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304 Query: 550 L 552 L Sbjct: 305 L 305 [159][TOP] >UniRef100_C4KIV8 DNA-directed RNA polymerase n=1 Tax=Sulfolobus islandicus M.16.4 RepID=C4KIV8_SULIK Length = 880 Score = 82.4 bits (202), Expect = 2e-14 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P E + DV ++ RPE +IL LPVPP+ IRP++ + S ED Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +IV +NE L +SI+ G P +++ D + LQ A + +++ LPP + + Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293 Query: 526 PLRGISQRL 552 PLR ++QRL Sbjct: 294 PLRTLAQRL 302 [160][TOP] >UniRef100_C3MY99 DNA-directed RNA polymerase n=2 Tax=Sulfolobus islandicus RepID=C3MY99_SULIM Length = 880 Score = 82.4 bits (202), Expect = 2e-14 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P E + DV ++ RPE +IL LPVPP+ IRP++ + S ED Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +IV +NE L +SI+ G P +++ D + LQ A + +++ LPP + + Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293 Query: 526 PLRGISQRL 552 PLR ++QRL Sbjct: 294 PLRTLAQRL 302 [161][TOP] >UniRef100_C3MRK3 DNA-directed RNA polymerase n=3 Tax=Sulfolobus islandicus RepID=C3MRK3_SULIL Length = 880 Score = 82.4 bits (202), Expect = 2e-14 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P E + DV ++ RPE +IL LPVPP+ IRP++ + S ED Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +IV +NE L +SI+ G P +++ D + LQ A + +++ LPP + + Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293 Query: 526 PLRGISQRL 552 PLR ++QRL Sbjct: 294 PLRTLAQRL 302 [162][TOP] >UniRef100_B8YB53 DNA-directed RNA polymerase n=1 Tax=Sulfolobus shibatae B12 RepID=B8YB53_SULSH Length = 880 Score = 82.4 bits (202), Expect = 2e-14 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P E + DV ++ RPE +IL LPVPP+ IRP++ + S ED Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +IV +NE L +SI+ G P +++ D + LQ A + +++ LPP + + Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293 Query: 526 PLRGISQRL 552 PLR ++QRL Sbjct: 294 PLRTLAQRL 302 [163][TOP] >UniRef100_A9A9V0 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C6 RepID=A9A9V0_METM6 Length = 889 Score = 82.0 bits (201), Expect = 3e-14 Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 1/121 (0%) Frame = +1 Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372 + E + ED L+ + + RPE ++L LPVPP+ +RP++ + S +EDDLT KL + Sbjct: 186 ILEKIPGEDCKLLGINSKVARPEYMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244 Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549 I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304 Query: 550 L 552 L Sbjct: 305 L 305 [164][TOP] >UniRef100_B3A009 DNA-directed RNA polymerase n=1 Tax=Haloarcula japonica RepID=B3A009_HALJP Length = 969 Score = 81.6 bits (200), Expect = 3e-14 Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 4/134 (2%) Frame = +1 Query: 163 DDLNPLRTLAL---FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSA 333 +D+N L + FE + +D+ ++ M+ RPE +IL LPVPP+ RP++ D Sbjct: 238 EDMNKLMPSDIRDWFEDIPDQDIEVLGMKPARSRPEWMILTVLPVPPVTARPSITLDNGQ 297 Query: 334 GSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA 513 S EDDLT KL +I+ +N+ ++ G P +++ D E LQ FM+++ + PP Sbjct: 298 RS-EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPAR 356 Query: 514 -STAKPLRGISQRL 552 + +PL+ +SQRL Sbjct: 357 HRSGRPLKTLSQRL 370 [165][TOP] >UniRef100_O27125 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=RPOA1_METTH Length = 870 Score = 81.3 bits (199), Expect = 5e-14 Identities = 48/174 (27%), Positives = 94/174 (54%), Gaps = 13/174 (7%) Frame = +1 Query: 70 REQAKSAAMESAYGDAKRNNAD----------LERHLSRVGDD--LNPLRTLALFEAMTA 213 +E++ + ++ Y +A+R+ L++ +S V D L P E ++ Sbjct: 126 KEESLTPIIKEIYAEARRDKCPHCEEEQEEIKLDKPVSIVEGDYKLTPSEVRERLERISD 185 Query: 214 EDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEA 393 +D ++ + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+ +N+ Sbjct: 186 DDALILGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-EDDLTHKLVDILRINQR 244 Query: 394 LAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 L +++ G P +++ D E LQ + +++A+ +PP + +PL+ ++QRL Sbjct: 245 LKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 298 [166][TOP] >UniRef100_Q27900 DNA-directed RNA polymerase (Fragment) n=1 Tax=Euplotes octocarinatus RepID=Q27900_EUPOC Length = 511 Score = 80.9 bits (198), Expect = 6e-14 Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 1/143 (0%) Frame = +1 Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306 N D+E L+++ D+NPL L + + +D+ L DM P +I+ Y+ VPP+C+R Sbjct: 214 NKDVEWGLNKMQQDINPLIAYNLLKNIRKDDIPLFDMNGKNINPCDMIVYYIIVPPVCLR 273 Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAV-LLMDGXEWLQVEAARFMN 483 P+V + EDDLT+KL+EI+ +N + KS +GGP L LQ A+++N Sbjct: 274 PSVAVTETK-RNEDDLTVKLSEILQLN-MIIKSFIVGGPNYSKLATTWNQLQYTLAQYIN 331 Query: 484 SDATNLPPLASTAKPLRGISQRL 552 +D LP K +R QRL Sbjct: 332 ADTPGLPLNMVGNKAIRAFCQRL 354 [167][TOP] >UniRef100_P41556 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanococcus vannielii SB RepID=RPOA1_METVS Length = 889 Score = 80.9 bits (198), Expect = 6e-14 Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 1/121 (0%) Frame = +1 Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372 + E + ED L+ + + RPE ++L LPVPP+ +RP++ + S +EDDLT KL + Sbjct: 186 ILEKIPNEDCKLLGINSRVARPEYMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244 Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549 I+ +N+ L ++IN G P +++ D + LQ + +++A +PP + +PLR ++QR Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304 Query: 550 L 552 L Sbjct: 305 L 305 [168][TOP] >UniRef100_A2DEX5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis G3 RepID=A2DEX5_TRIVA Length = 1657 Score = 80.5 bits (197), Expect = 8e-14 Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 1/141 (0%) Frame = +1 Query: 133 DLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPT 312 D +++L + DD+ PLR L LF+A+ + L+ P +I+ + +PP CIRP Sbjct: 181 DYKKYLDNICDDITPLRALQLFKAIPTRQIPLLLSGFSVSSPADMIITSIVIPPNCIRPA 240 Query: 313 VCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDA 492 V + G+ +DDLT++L + VH N+ + KSI +G A M+ LQ +NS+A Sbjct: 241 VIA-AGEGTNQDDLTVRLVDSVHFNDEIRKSIEVGRQASSTMELWSSLQQNVNSSINSEA 299 Query: 493 TNLPPLASTA-KPLRGISQRL 552 + KP+ G+ QRL Sbjct: 300 ADTAAKTKKKNKPVIGVIQRL 320 [169][TOP] >UniRef100_Q12WS6 DNA-directed RNA polymerase n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12WS6_METBU Length = 883 Score = 80.5 bits (197), Expect = 8e-14 Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 1/132 (0%) Frame = +1 Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339 G L P FE ++ +D+ ++ M RPE +IL LPVPP+ +RP++ + S Sbjct: 175 GHKLTPTEIRDRFENISDDDIRVMGMNPDTARPEWMILTVLPVPPVTVRPSITLE-SGQR 233 Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516 +EDDLT KL +I+ +N+ ++ + G P +++ D E LQ + +++ + +PP Sbjct: 234 SEDDLTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHLTTYFDNEVSGVPPARHR 293 Query: 517 TAKPLRGISQRL 552 + +PL+ ++QRL Sbjct: 294 SGRPLKTLTQRL 305 [170][TOP] >UniRef100_Q9HM79 DNA-directed RNA polymerase subunit A' n=2 Tax=Halobacterium salinarum RepID=RPOA1_HALSA Length = 971 Score = 80.5 bits (197), Expect = 8e-14 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 12/175 (6%) Frame = +1 Query: 64 ELREQAK---SAAMESAYGDAKRNNADLERHLSRVGDDLN--------PLRTLALFEAMT 210 EL EQ S E G+ + D E + +G DL P FE + Sbjct: 201 ELAEQTDIDISRINEILSGEFRPRREDREAIETAIGADLTTEDMNKLMPSDIRDWFEDIP 260 Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390 ED+ + + + RPE +IL LPVPP+ RP++ D S EDDLT KL +I+ +N+ Sbjct: 261 GEDLEALGVNSDRSRPEWMILTVLPVPPVTARPSITLDNGQRS-EDDLTHKLVDIIRINQ 319 Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 ++ G P +++ D E LQ FM+++ + PP + +PL+ +SQRL Sbjct: 320 RFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 374 [171][TOP] >UniRef100_B9Z9B0 DNA-directed RNA polymerase n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9Z9B0_NATMA Length = 976 Score = 80.1 bits (196), Expect = 1e-13 Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 1/120 (0%) Frame = +1 Query: 196 FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEI 375 FE + ED+ ++ + A RPE +IL LPVPP+ RP++ D S EDDLT KL +I Sbjct: 255 FENIPDEDIEVLGIDADRSRPEWMILTVLPVPPVTARPSITLDNGQRS-EDDLTHKLVDI 313 Query: 376 VHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 + +N+ ++ G P +++ D E LQ FM+++ + PP + +PL+ +SQRL Sbjct: 314 IRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 373 [172][TOP] >UniRef100_P31813 DNA-directed RNA polymerase subunit A' n=1 Tax=Thermococcus celer RepID=RPOA1_THECE Length = 905 Score = 80.1 bits (196), Expect = 1e-13 Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E + D+ LI + A RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+ Sbjct: 191 EKIPDRDLPLIGLDAEKARPEWMVLTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N L +I G P +++ D + LQ ++N++ + +PP + +PL+ +SQRL Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLSQRL 308 [173][TOP] >UniRef100_A5K7T9 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax RepID=A5K7T9_PLAVI Length = 1946 Score = 79.7 bits (195), Expect = 1e-13 Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 3/133 (2%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 DDLN L L LF+ M V L+++ + PE+L++ L VPP IRP+V D G+ Sbjct: 238 DDLNSLYVLNLFKNMNPYHVKLLNVES----PEKLLITALLVPPNTIRPSVVIDEH-GTA 292 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519 EDDLT L+EI +N + + G + E+LQ++ RF+NSD+ + L +T Sbjct: 293 EDDLTCILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 352 Query: 520 --AKPLRGISQRL 552 +KP RGI QRL Sbjct: 353 NISKPGRGICQRL 365 [174][TOP] >UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium aggregatum RepID=Q2PYS6_9FUNG Length = 1016 Score = 79.7 bits (195), Expect = 1e-13 Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 1/158 (0%) Frame = +1 Query: 82 KSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPE 261 + A++ +Y R++ D + +V DL + +++F++++ ED+ + + RPE Sbjct: 111 RKLALDLSYTVVLRDDNDQTKETKKV--DLTAEKVVSIFKSISEEDINNMGLSQDWARPE 168 Query: 262 RLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMD 441 + + L VPP+ +RP V + G ++DDLT K+ +IV N L K G PA ++ + Sbjct: 169 WMCITVLAVPPMPVRPAVNMNNGGGVSQDDLTYKIADIVKTNNLLRKHEAEGSPAHVINE 228 Query: 442 GXEWLQVEAARFMNSDATNLPPL-ASTAKPLRGISQRL 552 + LQ A +MN+D + +P + +PL+ I RL Sbjct: 229 FEKLLQYHVATYMNNDISGIPKAQQKSGRPLKSIRARL 266 [175][TOP] >UniRef100_B5IH61 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IH61_9EURY Length = 661 Score = 79.7 bits (195), Expect = 1e-13 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 1/148 (0%) Frame = +1 Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291 + K+ D G L P E + ED+ L+ M RPE ++L LPVP Sbjct: 103 EQKKITLDKPTTFREEGRKLTPKEIRERLERIPDEDLPLLGMNPETARPEWMVLTVLPVP 162 Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471 P+ +RPT+ + S EDDLT KL +I+ +N+ L ++ + G P +++ D E LQ Sbjct: 163 PVNVRPTITLETGERS-EDDLTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVT 221 Query: 472 RFMNSDATNLPPLA-STAKPLRGISQRL 552 + ++ + +PP + +PL+ + QRL Sbjct: 222 TYFDNQTSGIPPARHRSGRPLKTLVQRL 249 [176][TOP] >UniRef100_B5IGJ6 DNA-directed RNA polymerase n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IGJ6_9EURY Length = 895 Score = 79.7 bits (195), Expect = 1e-13 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 1/148 (0%) Frame = +1 Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291 + K+ D G L P E + ED+ L+ M RPE ++L LPVP Sbjct: 160 EQKKITLDKPTTFREEGRKLTPKEIRERLERIPDEDLPLLGMNPETARPEWMVLTVLPVP 219 Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471 P+ +RPT+ + S EDDLT KL +I+ +N+ L ++ + G P +++ D E LQ Sbjct: 220 PVNVRPTITLETGERS-EDDLTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVT 278 Query: 472 RFMNSDATNLPPLA-STAKPLRGISQRL 552 + ++ + +PP + +PL+ + QRL Sbjct: 279 TYFDNQTSGIPPARHRSGRPLKTLVQRL 306 [177][TOP] >UniRef100_B3L8U1 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H RepID=B3L8U1_PLAKH Length = 1970 Score = 79.3 bits (194), Expect = 2e-13 Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 3/133 (2%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 DDLN L L LF+ M V L+++ PE+L++ L VPP IRP+V D G+ Sbjct: 218 DDLNSLYVLNLFKNMNPYHVKLLNVE----NPEKLLITALLVPPNTIRPSVIIDEH-GTA 272 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519 EDDLT L+EI +N + + G + E+LQ++ RF+NSD+ + L +T Sbjct: 273 EDDLTCILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 332 Query: 520 --AKPLRGISQRL 552 +KP RGI QRL Sbjct: 333 NISKPGRGICQRL 345 [178][TOP] >UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa RepID=Q2PYR6_9FUNG Length = 1013 Score = 79.3 bits (194), Expect = 2e-13 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 1/131 (0%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 D+++ R L +T D + + RPE ++L +PVPP+ +RP++ D S Sbjct: 132 DEVSVERVLQTLRKITDRDAETLGIDPYFARPEWMVLHVMPVPPMTVRPSIQMDAMRPS- 190 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLAST 519 EDDLT KL++I+ NE L + I G PA ++ + LQ A FMN++A+ +P L + Sbjct: 191 EDDLTYKLSDILKANERLQRCIVEGAPAHVINEFVTLLQFHTAAFMNNEASGMPQALQKS 250 Query: 520 AKPLRGISQRL 552 +P++ I RL Sbjct: 251 GRPIKSIRARL 261 [179][TOP] >UniRef100_B9LQV9 DNA-directed RNA polymerase n=1 Tax=Halorubrum lacusprofundi ATCC 49239 RepID=B9LQV9_HALLT Length = 975 Score = 79.3 bits (194), Expect = 2e-13 Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 6/171 (3%) Frame = +1 Query: 58 KTELREQAKSAAMESAYGDAKRNNADLERHLS--RVGDDLNPLRTLAL---FEAMTAEDV 222 KT++ + + M + K + +E+ L +D+N L + FE + ED+ Sbjct: 204 KTDIDLERINEIMAGEFRPRKEDRRAIEKALDIDLTEEDMNKLMPSDIRDWFEDIPDEDL 263 Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402 ++ + + RPE +IL LPVPP+ RP++ D S EDDLT KL +I+ +N+ + Sbjct: 264 EVLGIDSEHSRPEWMILTVLPVPPVTTRPSITLDNGQRS-EDDLTHKLVDIIRINQRFME 322 Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 + G P +++ D E LQ F++++ + PP + +PL+ +SQRL Sbjct: 323 NREAGAPQLIIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRL 373 [180][TOP] >UniRef100_A4YCQ9 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YCQ9_METS5 Length = 886 Score = 79.3 bits (194), Expect = 2e-13 Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P E + DV L+ RPE +IL LPVPP+ IRP++ + S ED Sbjct: 181 LTPSDIRERLERIPDSDVELLGYDPTTSRPEWIILTVLPVPPITIRPSIMIE-SGIRAED 239 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +IV +NE L +SI+ G P +++ D + LQ A + +++ LP + + Sbjct: 240 DLTHKLVDIVRINERLKESIDAGAPQLIVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGR 299 Query: 526 PLRGISQRL 552 PLR ++QRL Sbjct: 300 PLRTLAQRL 308 [181][TOP] >UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi RepID=Q8MX30_NAEGR Length = 1590 Score = 79.0 bits (193), Expect = 2e-13 Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%) Frame = +1 Query: 118 KRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPL 297 K +A+ ++ L++ +L R L +F+ + AED+ L+ RPE +IL LP+PP Sbjct: 118 KDTSAEAKQELTK--QELTAERALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPPP 175 Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477 +RP+V SA +EDDLT KL +I+ N A+ K+ G P + + LQ A + Sbjct: 176 QVRPSV-HHGSADRSEDDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCATY 234 Query: 478 MNSDATNLPPLAS-TAKPLRGISQRL 552 +N++ +P + + +PL+ I QRL Sbjct: 235 VNNEYPGVPTATTKSGRPLKSIRQRL 260 [182][TOP] >UniRef100_Q0W8G9 DNA-directed RNA polymerase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8G9_UNCMA Length = 877 Score = 79.0 bits (193), Expect = 2e-13 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Frame = +1 Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339 G L P E + ED+ + M RPE ++L LPVPP+ +RP++ + S Sbjct: 167 GHKLMPTDVRDRLEMIPDEDIEVFGMDPRNARPEWMVLTVLPVPPVTVRPSITLE-SGQR 225 Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516 +EDDLT KL +I+ +N+ ++ + G P +++ D E LQ +M++ + +PP Sbjct: 226 SEDDLTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHVTTYMDNAVSGVPPARHR 285 Query: 517 TAKPLRGISQRL 552 + +PL+ +SQRL Sbjct: 286 SGRPLKTLSQRL 297 [183][TOP] >UniRef100_A5ULN6 DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter smithii ATCC 35061 RepID=A5ULN6_METS3 Length = 894 Score = 79.0 bits (193), Expect = 2e-13 Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E ++ ED ++ + RPE L+L LPVPP+ +RP++ D S EDDLT KL +I+ Sbjct: 185 ERISDEDAFVLGVNPEVARPEWLVLTVLPVPPVTVRPSITLDTGERS-EDDLTHKLVDIL 243 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N+ L +++ G P +++ D E LQ + +++A+ +PP + +PL+ ++QRL Sbjct: 244 RINQRLIENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 302 [184][TOP] >UniRef100_C7NTX8 DNA-directed RNA polymerase subunit A' n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NTX8_HALUD Length = 1013 Score = 79.0 bits (193), Expect = 2e-13 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 D L P FE + +D+ I + RPE +IL LPVPP+ RP++ D S Sbjct: 287 DKLMPSDIRDWFEEIPDDDLEAIGVNPETSRPEWMILTVLPVPPVTARPSITLDNGQRS- 345 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-ST 519 EDDLT KL +I+ +N+ ++ G P +++ D E LQ FM+++ + PP + Sbjct: 346 EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRS 405 Query: 520 AKPLRGISQRL 552 +PL+ +SQRL Sbjct: 406 GRPLKTLSQRL 416 [185][TOP] >UniRef100_B9AEP6 DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter smithii DSM 2375 RepID=B9AEP6_METSM Length = 894 Score = 79.0 bits (193), Expect = 2e-13 Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E ++ ED ++ + RPE L+L LPVPP+ +RP++ D S EDDLT KL +I+ Sbjct: 185 ERISDEDAFVLGVNPEVARPEWLVLTVLPVPPVTVRPSITLDTGERS-EDDLTHKLVDIL 243 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N+ L +++ G P +++ D E LQ + +++A+ +PP + +PL+ ++QRL Sbjct: 244 RINQRLIENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 302 [186][TOP] >UniRef100_B9PZ91 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii GT1 RepID=B9PZ91_TOXGO Length = 1747 Score = 78.2 bits (191), Expect = 4e-13 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%) Frame = +1 Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336 V DDL+PL L E + + ++D+ + PE+L+L L VPP CIRP+V G Sbjct: 291 VEDDLDPLYVKNLLERIRPSECEILDIVS----PEKLLLSRLLVPPSCIRPSVTIGEQ-G 345 Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516 +TEDDLT L++I +N L + G + E+LQ++ R +N+DA + L + Sbjct: 346 TTEDDLTCVLSDIAELNNVLQSHVQAGFHTNQFLGIWEFLQLQCTRLINADAPAVSQLLA 405 Query: 517 T---AKPLRGISQRL 552 + +KP RGI QRL Sbjct: 406 SKNISKPGRGICQRL 420 [187][TOP] >UniRef100_B6KRB8 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii RepID=B6KRB8_TOXGO Length = 1746 Score = 78.2 bits (191), Expect = 4e-13 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%) Frame = +1 Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336 V DDL+PL L E + + ++D+ + PE+L+L L VPP CIRP+V G Sbjct: 290 VEDDLDPLYVKNLLERIRPSECEILDIVS----PEKLLLSRLLVPPSCIRPSVTIGEQ-G 344 Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516 +TEDDLT L++I +N L + G + E+LQ++ R +N+DA + L + Sbjct: 345 TTEDDLTCVLSDIAELNNVLQSHVKAGFHTNQFLGIWEFLQLQCTRLINADAPAVSQLLA 404 Query: 517 T---AKPLRGISQRL 552 + +KP RGI QRL Sbjct: 405 SKNISKPGRGICQRL 419 [188][TOP] >UniRef100_A2BN34 DNA-directed RNA polymerase n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BN34_HYPBU Length = 881 Score = 78.2 bits (191), Expect = 4e-13 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 LNPL + E + +D L+ RPE ++L LPVPP+ +RP++ + ED Sbjct: 177 LNPLEIRSRLERVPNDDARLLGFDPESARPEWMVLTVLPVPPIHVRPSIVLETGI-RAED 235 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST-AK 525 DLT KL +IV NE L + I+ G P L+ + LQ A + +++ +P + Sbjct: 236 DLTHKLADIVRTNERLRELIDSGAPQTLIDEHWTLLQYHVATYFDNELPRIPVARHRGGR 295 Query: 526 PLRGISQRL 552 PL+G++QRL Sbjct: 296 PLKGLAQRL 304 [189][TOP] >UniRef100_C7DHC4 DNA-directed RNA polymerase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC4_9EURY Length = 844 Score = 78.2 bits (191), Expect = 4e-13 Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 1/132 (0%) Frame = +1 Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339 G+ + P +T ED+ + +M A RPE +L L VPP+ +RP++ + S Sbjct: 174 GNKMKPDEIRDWLSGITDEDLKMFNMDAKAARPEWFVLTALLVPPVNVRPSITLE-SGER 232 Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516 +EDDLT KL EI+ +N+ L + I+ G P +++ D E LQ + N++ +P Sbjct: 233 SEDDLTHKLVEIMRINQRLEQDIDAGAPQIIIDDLWELLQYHVTTYFNNETPGVPVARHR 292 Query: 517 TAKPLRGISQRL 552 + +PL+ I+QRL Sbjct: 293 STRPLKTIAQRL 304 [190][TOP] >UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E658E Length = 1628 Score = 77.8 bits (190), Expect = 5e-13 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 8/189 (4%) Frame = +1 Query: 10 GGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD------- 168 GG + ++ T+ ++ ++ +R+ +L V +D Sbjct: 154 GGEEMDNKFGMEQQETEEDITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKIL 213 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L+P R +F+ ++ E+ ++ M + RPE +I+ LPVPPL +RP V SA +D Sbjct: 214 LSPERVHEIFKRISDEEDIILGMDSKFARPEWMIVTVLPVPPLAVRPAVVMQGSA-RNQD 272 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525 DLT KL +IV +N L ++ G A ++ + + LQ A ++++ LP + + + Sbjct: 273 DLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 332 Query: 526 PLRGISQRL 552 PL+ I QRL Sbjct: 333 PLKSIKQRL 341 [191][TOP] >UniRef100_Q976A5 DNA-directed RNA polymerase n=1 Tax=Sulfolobus tokodaii RepID=Q976A5_SULTO Length = 884 Score = 77.8 bits (190), Expect = 5e-13 Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P E + D L+ RPE +IL LPVPP+ IRP++ + S ED Sbjct: 179 LTPSDIRERLERIPDSDYELLGYDPKYSRPEWMILTVLPVPPITIRPSITIE-SGIRAED 237 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +I+ +NE L +SI+ G P +++ D + LQ + + +++ +PP + + Sbjct: 238 DLTHKLVDIIRINERLKESIDAGAPQLIIEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGR 297 Query: 526 PLRGISQRL 552 PLR ++QRL Sbjct: 298 PLRTLAQRL 306 [192][TOP] >UniRef100_C5A208 DNA-directed RNA polymerase n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A208_THEGJ Length = 905 Score = 77.8 bits (190), Expect = 5e-13 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E + +D+ L+ + RPE +IL LPVPP+ +RP++ + S EDDLT KL +I+ Sbjct: 191 ERIPDKDLPLLGLHPEKSRPEWMILTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N L +I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRL 308 [193][TOP] >UniRef100_A6UV50 DNA-directed RNA polymerase n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UV50_META3 Length = 888 Score = 77.8 bits (190), Expect = 5e-13 Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Frame = +1 Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372 + E + ED LI + RPE +IL LPVPP+ +RP++ + S +EDDLT KL + Sbjct: 186 ILEKIPDEDCMLIGVNPEVARPEWMILTSLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244 Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549 I+ +N+ L ++I G P +++ D + LQ + +++A PP + +PLR I+QR Sbjct: 245 IIRINQRLDENIEGGAPNLIIEDLWDLLQYHINTYFDNEAPGTPPARHRSGRPLRTIAQR 304 Query: 550 L 552 L Sbjct: 305 L 305 [194][TOP] >UniRef100_UPI0001B119CD RNA polymerase alpha subunit n=1 Tax=Methanocaldococcus vulcanius M7 RepID=UPI0001B119CD Length = 1234 Score = 77.4 bits (189), Expect = 7e-13 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P + E + ED L+ + RPE ++L LPVPP+ +RP++ D S ED Sbjct: 71 LTPSDVREILEKIPDEDCILLGINPEVARPEWMVLTVLPVPPVTVRPSITLDTGERS-ED 129 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +I+ +N L ++I G P +++ D LQ + +++A +PP + + Sbjct: 130 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHINTYFDNEAPGIPPAKHRSGR 189 Query: 526 PLRGISQRL 552 PL+ ++QRL Sbjct: 190 PLKTLAQRL 198 [195][TOP] >UniRef100_B9FFW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=B9FFW1_ORYSJ Length = 1321 Score = 77.4 bits (189), Expect = 7e-13 Identities = 47/128 (36%), Positives = 72/128 (56%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L+P L+LF+ MT ED L+++ G RPE+LI+ + VPP+ IRP+V S ED Sbjct: 216 LDPAIVLSLFKRMTDEDCELLNL---GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNED 272 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKP 528 +T+ L I + N L +++ GG + D + LQ++ ++NSDA +LP Sbjct: 273 SITVILKSIANTNSILKENLQTGGQFMKCFDCWQHLQLQVVEYINSDAPSLP-----ESQ 327 Query: 529 LRGISQRL 552 RG+ QRL Sbjct: 328 HRGLVQRL 335 [196][TOP] >UniRef100_Q7X881 DNA-directed RNA polymerase n=3 Tax=Oryza sativa RepID=Q7X881_ORYSJ Length = 1383 Score = 77.4 bits (189), Expect = 7e-13 Identities = 47/128 (36%), Positives = 72/128 (56%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L+P L+LF+ MT ED L+++ G RPE+LI+ + VPP+ IRP+V S ED Sbjct: 215 LDPAIVLSLFKRMTDEDCELLNL---GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNED 271 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKP 528 +T+ L I + N L +++ GG + D + LQ++ ++NSDA +LP Sbjct: 272 SITVILKSIANTNSILKENLQTGGQFMKCFDCWQHLQLQVVEYINSDAPSLP-----ESQ 326 Query: 529 LRGISQRL 552 RG+ QRL Sbjct: 327 HRGLVQRL 334 [197][TOP] >UniRef100_A8X1M6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae RepID=A8X1M6_CAEBR Length = 1435 Score = 77.4 bits (189), Expect = 7e-13 Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 1/104 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGR-PERLILRYLPVPPLCIRPTVCSDPSAGSTE 345 LNPL LF + D+ ++ +R+ + P L+L +PVPP+CIRP+V S+ +G+TE Sbjct: 225 LNPLFVQKLFANIKEADIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKSGTTE 284 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477 DD+TMKL EI+ N+ L K G PA L + E LQV + F Sbjct: 285 DDVTMKLMEIMLTNDVLKKHKRDGAPAKTLFETWEHLQVWSLSF 328 [198][TOP] >UniRef100_Q2PYS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spizellomyces punctatus RepID=Q2PYS4_SPIPN Length = 792 Score = 77.4 bits (189), Expect = 7e-13 Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 1/121 (0%) Frame = +1 Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372 LF+ ++ +D + + RPE +I+ LPVPP+ +RP V D A + +DDLT KL + Sbjct: 139 LFQKISEDDCMSLGLNPDWARPEWMIITVLPVPPMAVRPAVSMDGVA-TNQDDLTHKLRD 197 Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPP-LASTAKPLRGISQR 549 IV N L K G PA ++ + + LQ A +M++D LPP L + +PL+ I R Sbjct: 198 IVLANSFLRKHETEGSPAHVINEFEKLLQYHIATYMDNDIAGLPPSLQKSGRPLKSIRAR 257 Query: 550 L 552 L Sbjct: 258 L 258 [199][TOP] >UniRef100_O59227 DNA-directed RNA polymerase n=1 Tax=Pyrococcus horikoshii RepID=O59227_PYRHO Length = 907 Score = 77.4 bits (189), Expect = 7e-13 Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E + +D+ L+ + RPE ++L LPVPP+ +RP++ + + EDDLT KL +I+ Sbjct: 191 EKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTVRPSITLETGIRA-EDDLTHKLVDII 249 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N L ++I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL Sbjct: 250 RINNRLRQNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308 [200][TOP] >UniRef100_B6YT16 DNA-directed RNA polymerase n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YT16_THEON Length = 905 Score = 77.4 bits (189), Expect = 7e-13 Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E + +D+ L+ + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+ Sbjct: 191 EKIPDKDLPLLGLHPEKARPEWMVLTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N L +I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRL 308 [201][TOP] >UniRef100_C9RDK8 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanocaldococcus vulcanius M7 RepID=C9RDK8_9EURY Length = 1343 Score = 77.4 bits (189), Expect = 7e-13 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P + E + ED L+ + RPE ++L LPVPP+ +RP++ D S ED Sbjct: 180 LTPSDVREILEKIPDEDCILLGINPEVARPEWMVLTVLPVPPVTVRPSITLDTGERS-ED 238 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +I+ +N L ++I G P +++ D LQ + +++A +PP + + Sbjct: 239 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHINTYFDNEAPGIPPAKHRSGR 298 Query: 526 PLRGISQRL 552 PL+ ++QRL Sbjct: 299 PLKTLAQRL 307 [202][TOP] >UniRef100_B7R289 DNA-directed RNA polymerase n=1 Tax=Thermococcus sp. AM4 RepID=B7R289_9EURY Length = 905 Score = 77.4 bits (189), Expect = 7e-13 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E + +D+ L+ + RPE +IL LPVPP+ +RP++ + S EDDLT KL +I+ Sbjct: 191 ERIPDKDLPLLGLHPEKSRPEWMILTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N L +I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308 [203][TOP] >UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A92 Length = 1714 Score = 77.0 bits (188), Expect = 9e-13 Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 8/189 (4%) Frame = +1 Query: 10 GGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD------- 168 GG + ++ T+ ++ ++ +R+ +L V +D Sbjct: 134 GGEEMDNKFGMEQQETEEDITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKIL 193 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L+P R +F+ ++ E+ ++ M RPE +I+ LPVPPL +RP V SA +D Sbjct: 194 LSPERVHEIFKRISDEEDMILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSA-RNQD 252 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525 DLT KL +IV +N L ++ G A ++ + + LQ A ++++ LP + + + Sbjct: 253 DLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 312 Query: 526 PLRGISQRL 552 PL+ I QRL Sbjct: 313 PLKSIKQRL 321 [204][TOP] >UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BQ02_THAPS Length = 1627 Score = 77.0 bits (188), Expect = 9e-13 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 4/144 (2%) Frame = +1 Query: 133 DLERHLSRVGDD---LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCI 303 ++ER GD ++ + + +F+ M ++V + + RPE + + +PVPPL + Sbjct: 191 EMERVPGSSGDKKQFMSAQKAVDIFKKMRDDEVKALGLDVTWARPEWMCVSVMPVPPLHV 250 Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483 RP+V A S+EDDLT +L IV N AL +I G P +++ + LQ A F+N Sbjct: 251 RPSVVMGGGAQSSEDDLTHQLVNIVKSNIALKTAIQNGEPNIIVEQFEQALQHNVAAFVN 310 Query: 484 SDATNLPPLAS-TAKPLRGISQRL 552 ++ +P + + +PL+ ++QRL Sbjct: 311 NEMRGMPQITQRSGRPLKTLAQRL 334 [205][TOP] >UniRef100_Q8IE49 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8IE49_PLAF7 Length = 2356 Score = 77.0 bits (188), Expect = 9e-13 Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 3/133 (2%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 +DLN L L LF+ + V L+++ PE+LI+ L VPP IRP+V D G+ Sbjct: 216 EDLNSLYVLKLFKNINPYHVKLLNIE----NPEKLIITALLVPPNTIRPSVIIDEH-GTA 270 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519 EDDLT L+EI +N + G + E+LQ++ RF+NSD+ + L +T Sbjct: 271 EDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 330 Query: 520 --AKPLRGISQRL 552 +KP RGI QRL Sbjct: 331 NISKPGRGICQRL 343 [206][TOP] >UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis RepID=Q25151_9ANNE Length = 1337 Score = 77.0 bits (188), Expect = 9e-13 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 8/153 (5%) Frame = +1 Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +RN +L ++ DD L R L +F+A+T E ++ M RP+ LI Sbjct: 99 RRNLLELTAEWKQINDDNQEKKMILTAERVLEIFKAITDETCTILGMDPKYARPDWLIAT 158 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 LPVPPL +RP V SA +DDLT KL +I+ +N L ++ G A +L + + L Sbjct: 159 MLPVPPLPVRPAVVMFGSA-KNQDDLTHKLADIIKINNQLKRNEMNGAAAHILAEDTKML 217 Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 Q A ++++ LP + +PL+ I QRL Sbjct: 218 QFHVATMIDNEMPGLPRATQKSGRPLKSIKQRL 250 [207][TOP] >UniRef100_Q0U9K8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q0U9K8_PHANO Length = 1720 Score = 77.0 bits (188), Expect = 9e-13 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 3/184 (1%) Frame = +1 Query: 10 GGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTL 189 GG G + K+ K + K GD K + L P L Sbjct: 175 GGCGNTNPDTIRKEGVKLTATYKPKKGEDSDGQGDRK--------------EVLTPQHAL 220 Query: 190 ALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST--EDDLTMK 363 +F+ ++ +AL+ + A RPE +I+ LPVPP +RP++ D + EDDLT K Sbjct: 221 NVFKLLSDNTLALLGLNADYARPEWMIMTVLPVPPPPVRPSISVDGTGQGMRGEDDLTYK 280 Query: 364 LTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL-ASTAKPLRGI 540 L +I+ N+ + + I+ G P +L + +Q A +M++DA +PP + +PL+ I Sbjct: 281 LGDIIRANQRVQECISEGAPQHILNEFEALVQYHVATYMDNDANGIPPSNQKSGRPLKTI 340 Query: 541 SQRL 552 RL Sbjct: 341 RGRL 344 [208][TOP] >UniRef100_Q5JE33 DNA-directed RNA polymerase n=1 Tax=Thermococcus kodakarensis RepID=Q5JE33_PYRKO Length = 906 Score = 77.0 bits (188), Expect = 9e-13 Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E + +D+ L+ + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+ Sbjct: 191 EKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N L +I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308 [209][TOP] >UniRef100_Q18EX6 DNA-directed RNA polymerase n=1 Tax=Haloquadratum walsbyi DSM 16790 RepID=Q18EX6_HALWD Length = 978 Score = 77.0 bits (188), Expect = 9e-13 Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 4/134 (2%) Frame = +1 Query: 163 DDLNPLRTLAL---FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSA 333 +D+N L + FE++ ED+ + + RPE +++ LPVPP+ RP++ D Sbjct: 242 EDMNKLMASDIRDWFESIPDEDIRTLGIDPSRARPEWMVMTVLPVPPVTARPSITLDNGQ 301 Query: 334 GSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA 513 S EDDLT KL +I+ +N+ ++ G P +++ D E LQ F++++ + PP Sbjct: 302 RS-EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPAR 360 Query: 514 -STAKPLRGISQRL 552 + +PL+ +SQRL Sbjct: 361 HRSGRPLKTLSQRL 374 [210][TOP] >UniRef100_A0RXW9 DNA-directed RNA polymerase n=1 Tax=Cenarchaeum symbiosum RepID=A0RXW9_CENSY Length = 1260 Score = 77.0 bits (188), Expect = 9e-13 Identities = 43/136 (31%), Positives = 78/136 (57%), Gaps = 2/136 (1%) Frame = +1 Query: 151 SRVGDD-LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDP 327 + +G++ L P+ F +T ED+ L+ RPE IL+ LPVPP+ +RP++ + Sbjct: 171 TEIGENRLLPITIREKFSQITNEDLVLLGYDPATARPEWFILQALPVPPVTVRPSIILET 230 Query: 328 SAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPP 507 S EDDLT K+ +I+ +N+ L +S G P +++ D + LQ A + +++ + +P Sbjct: 231 GIRS-EDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHATTYFDNEISGIPQ 289 Query: 508 L-ASTAKPLRGISQRL 552 + +PL+ ++QRL Sbjct: 290 AHHRSGRPLKTLTQRL 305 [211][TOP] >UniRef100_C1V769 DNA-directed RNA polymerase n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1V769_9EURY Length = 978 Score = 77.0 bits (188), Expect = 9e-13 Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 4/134 (2%) Frame = +1 Query: 163 DDLNPLRTLAL---FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSA 333 +D+N L + FE + ED+ + + RPE +IL LPVPP+ RP++ D Sbjct: 242 EDMNKLMPSDIRDWFEDIPDEDIVTLGIDPSRARPEWMILTVLPVPPVTARPSITLDNGQ 301 Query: 334 GSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA 513 S EDDLT KL +I+ +N+ ++ G P +++ D E LQ F++++ + PP Sbjct: 302 RS-EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPAR 360 Query: 514 -STAKPLRGISQRL 552 + +PL+ +SQRL Sbjct: 361 HRSGRPLKTLSQRL 374 [212][TOP] >UniRef100_P27625 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Plasmodium falciparum RepID=RPC1_PLAFA Length = 2339 Score = 77.0 bits (188), Expect = 9e-13 Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 3/133 (2%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 +DLN L L LF+ + V L+++ PE+LI+ L VPP IRP+V D G+ Sbjct: 216 EDLNSLYVLKLFKNINPYHVKLLNIE----NPEKLIITALLVPPNTIRPSVIIDEH-GTA 270 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519 EDDLT L+EI +N + G + E+LQ++ RF+NSD+ + L +T Sbjct: 271 EDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 330 Query: 520 --AKPLRGISQRL 552 +KP RGI QRL Sbjct: 331 NISKPGRGICQRL 343 [213][TOP] >UniRef100_Q8U0M4 DNA-directed RNA polymerase n=1 Tax=Pyrococcus furiosus RepID=Q8U0M4_PYRFU Length = 907 Score = 76.6 bits (187), Expect = 1e-12 Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P E + +D+ L+ + RPE ++L LPVPP+ RP++ + + ED Sbjct: 178 LMPTEVRDWLEKIPDKDLPLLGLDPEKSRPEWMVLTVLPVPPVTARPSITLETGIRA-ED 236 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +I+ +N L ++I G P +++ D + LQ ++N++A +PP + + Sbjct: 237 DLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNEAPGVPPAKHKSGR 296 Query: 526 PLRGISQRL 552 PL+ ++QRL Sbjct: 297 PLKTLAQRL 305 [214][TOP] >UniRef100_Q2NEK4 DNA-directed RNA polymerase n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEK4_METST Length = 873 Score = 76.6 bits (187), Expect = 1e-12 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E + ED I + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+ Sbjct: 181 EMIPEEDYIFIGINPKVARPEWMVLTVLPVPPVTVRPSITLETGERS-EDDLTHKLVDIL 239 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N+ L +++ G P +++ D E LQ + +++A+ +PP + +PL+ ++QRL Sbjct: 240 RINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 298 [215][TOP] >UniRef100_C6A1G0 DNA-directed RNA polymerase n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A1G0_THESM Length = 905 Score = 76.6 bits (187), Expect = 1e-12 Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E + +D+ L+ + RPE ++L LPVPP+ +RP++ + S EDDLT KL +I+ Sbjct: 191 EKIPDKDLPLLGLNPENSRPEWMVLTVLPVPPVSVRPSITLE-SGIRAEDDLTHKLVDII 249 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N L ++I G P +++ D + LQ + +++ + +PP + +PL+ ++QRL Sbjct: 250 RINARLKQNIEAGAPQLIIEDLWDLLQYHVTTYFDNETSGIPPAKHKSGRPLKTLAQRL 308 [216][TOP] >UniRef100_C7P941 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P941_METFA Length = 891 Score = 76.6 bits (187), Expect = 1e-12 Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P + E + ED L+ + RPE ++L LPVPP+ +RP++ + S ED Sbjct: 180 LTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-ED 238 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +I+ +N L ++I G P +++ D LQ + +++A +PP + + Sbjct: 239 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGR 298 Query: 526 PLRGISQRL 552 PL+ ++QRL Sbjct: 299 PLKTLAQRL 307 [217][TOP] >UniRef100_Q58445 Mja rpoA1 intein n=1 Tax=Methanocaldococcus jannaschii RepID=RPOA1_METJA Length = 1341 Score = 76.6 bits (187), Expect = 1e-12 Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P + E + ED L+ + RPE ++L LPVPP+ +RP++ + S ED Sbjct: 178 LTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-ED 236 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +I+ +N L ++I G P +++ D LQ + +++A +PP + + Sbjct: 237 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGR 296 Query: 526 PLRGISQRL 552 PL+ ++QRL Sbjct: 297 PLKTLAQRL 305 [218][TOP] >UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis elegans RepID=RPB1_CAEEL Length = 1852 Score = 76.6 bits (187), Expect = 1e-12 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Frame = +1 Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360 R L +F+ +T ED+ +I M RPE +I LPVPPL +RP V + SA +DDLT Sbjct: 214 RVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSA-KNQDDLTH 272 Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST-AKPLRG 537 KL++I+ N+ L ++ G A +L D LQ A +++ LP +PL+ Sbjct: 273 KLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKS 332 Query: 538 ISQRL 552 I QRL Sbjct: 333 IKQRL 337 [219][TOP] >UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae RepID=Q84KP6_CYAME Length = 1819 Score = 76.3 bits (186), Expect = 1e-12 Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 1/141 (0%) Frame = +1 Query: 133 DLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPT 312 D E + +L R +F + ED+ L+ RPE ++L LPVPP +RP+ Sbjct: 199 DAEAFAAERKQELAAERVQQIFRHIRDEDLELLGFHPRFSRPEWMVLSVLPVPPPHVRPS 258 Query: 313 VCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDA 492 + D + EDDLT KL +I+ N AL + G PA ++ + LQ A FMN+D Sbjct: 259 IQMD-AVSRGEDDLTFKLGDIIKANNALQRLEAEGAPAHVIREQYVLLQFHVATFMNNDL 317 Query: 493 TNLP-PLASTAKPLRGISQRL 552 +P + +PL+ I+QRL Sbjct: 318 PGMPRATLRSGRPLKSIAQRL 338 [220][TOP] >UniRef100_Q70GL5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cercomonas sp. ATCC 50318 RepID=Q70GL5_9EUKA Length = 417 Score = 76.3 bits (186), Expect = 1e-12 Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L+P + +F ++ ED + + V RP+ +L LPVPP +RP+V D SA D Sbjct: 132 LSPSKIYDIFRNISDEDCRALGLDPVNARPDWFLLTVLPVPPPPVRPSVMFD-SATRASD 190 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525 DLT KL++IV +NE L K G +L D + LQ A +++ + LP + K Sbjct: 191 DLTYKLSDIVKVNEQLKKQEAQGAAEHILQDSADVLQFHVATLFDNEISGLPRSTQRSGK 250 Query: 526 PLRGISQRL 552 P++ I QRL Sbjct: 251 PIKSIRQRL 259 [221][TOP] >UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JYP8_SCHJY Length = 1748 Score = 76.3 bits (186), Expect = 1e-12 Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 1/150 (0%) Frame = +1 Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLP 285 +G K+ D + R+ LNPL +F+ +++ED+ + + RP+ +I+ LP Sbjct: 190 WGSWKKGKDDSDLPEKRL---LNPLEVHTIFKHISSEDLVYMGLNEQYARPDWMIITVLP 246 Query: 286 VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVE 465 VPP +RP++ D S+ EDDLT KL++I+ N + + G PA ++ + + LQ Sbjct: 247 VPPPSVRPSISVDGSSRG-EDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFH 305 Query: 466 AARFMNSDATNLP-PLASTAKPLRGISQRL 552 A +M+++ P L + +PL+ I RL Sbjct: 306 VATYMDNEIAGQPQALQKSGRPLKSIRARL 335 [222][TOP] >UniRef100_A5H290 DNA-directed RNA polymerase (Fragment) n=1 Tax=Physconia muscigena RepID=A5H290_9LECA Length = 391 Score = 76.3 bits (186), Expect = 1e-12 Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 2/130 (1%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST-E 345 + P LA+F M+ ED+ ++ M RPE +I+ LPVPP +RP++ D G T E Sbjct: 141 ITPAMALAIFLQMSPEDIKIMGMSNDYARPEWMIITVLPVPPPPVRPSIKVDSGDGPTGE 200 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522 DDLT KL +I+ N + + G PA ++ + LQ A +M++D P L + Sbjct: 201 DDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSG 260 Query: 523 KPLRGISQRL 552 +P++ I RL Sbjct: 261 RPVKAIRARL 270 [223][TOP] >UniRef100_A2SSM4 DNA-directed RNA polymerase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SSM4_METLZ Length = 889 Score = 76.3 bits (186), Expect = 1e-12 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 6/176 (3%) Frame = +1 Query: 43 YKKPTK-----TELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAM 207 ++KPT TE+ E K E K +AD+ L ++ DD Sbjct: 151 FEKPTSFVEIVTEMGEDGKVHKSER-----KLTSADIRERLEKIPDD------------- 192 Query: 208 TAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMN 387 D+ L+ + RPE +L LPVPP+ +RP++ + S EDDLT KL +I+ +N Sbjct: 193 ---DLRLLGIDPEVARPEWTVLTVLPVPPVTVRPSIILENGQRS-EDDLTHKLVDIIRIN 248 Query: 388 EALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 + ++ + G P +++ D E LQ +++++ PP + +PL+ +SQRL Sbjct: 249 QRFKENQDAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRPLKTLSQRL 304 [224][TOP] >UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis briggsae RepID=RPB1_CAEBR Length = 1853 Score = 76.3 bits (186), Expect = 1e-12 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Frame = +1 Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360 R L +F+ +T ED+ +I M RPE +I LPVPPL +RP V + SA +DDLT Sbjct: 214 RVLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSA-KNQDDLTH 272 Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST-AKPLRG 537 KL++I+ N+ L ++ G A +L D LQ A +++ LP +PL+ Sbjct: 273 KLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKS 332 Query: 538 ISQRL 552 I QRL Sbjct: 333 IKQRL 337 [225][TOP] >UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SF83_TETNG Length = 1745 Score = 75.9 bits (185), Expect = 2e-12 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Frame = +1 Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+ Sbjct: 13 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKFARPEWMIVT 72 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L Sbjct: 73 VLPVPPLAVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLL 131 Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 Q A ++++ LP + + +PL+ I QRL Sbjct: 132 QFHVATMVDNELPGLPRAMQKSGRPLKSIKQRL 164 [226][TOP] >UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR Length = 1706 Score = 75.9 bits (185), Expect = 2e-12 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Frame = +1 Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372 +F+ + ED+ L+ + RP+ L+++ LPVPPL +RP+V S+EDDLT +L Sbjct: 145 IFKQIREEDIVLLGLDVQHARPDWLLVQVLPVPPLHVRPSVTVGGGTQSSEDDLTHQLVN 204 Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQR 549 ++ N +L ++++ G P +++ LQ A FM+++ +P + + +PL+ I+QR Sbjct: 205 VIKSNLSLQQAVSNGEPQIVVEQFELALQHNVAAFMDNELRGMPQVTQRSGRPLKTITQR 264 Query: 550 L 552 L Sbjct: 265 L 265 [227][TOP] >UniRef100_Q7RQQ6 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii RepID=Q7RQQ6_PLAYO Length = 2020 Score = 75.9 bits (185), Expect = 2e-12 Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 3/133 (2%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 +DLN L L LF+ + + L+++ PE+LI+ L VPP IRP+V D G+ Sbjct: 216 EDLNSLYVLKLFKNINPFYIKLLNIE----NPEKLIITTLIVPPNTIRPSVIIDEH-GTA 270 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519 EDDLT L+EI +N + + G + E+LQ++ RF+NSD+ + L +T Sbjct: 271 EDDLTCILSEIAQLNNTINSQSSNGYQTNQFLGNIEFLQLQVTRFINSDSPAVSQLLATQ 330 Query: 520 --AKPLRGISQRL 552 +KP RGI QRL Sbjct: 331 NISKPGRGICQRL 343 [228][TOP] >UniRef100_A5H2F1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tornabea scutellifera RepID=A5H2F1_9LECA Length = 993 Score = 75.9 bits (185), Expect = 2e-12 Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 2/130 (1%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST-E 345 + P LA+F+AM+ +D+ + + RPE +I+ LPVPP +RP++ D G T E Sbjct: 115 ITPKMALAVFQAMSTDDIKKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVDGGDGPTGE 174 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522 DDLT KL +I+ N + + G PA ++ + LQ A +M++D P L + Sbjct: 175 DDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSG 234 Query: 523 KPLRGISQRL 552 +P++ I RL Sbjct: 235 RPVKAIRARL 244 [229][TOP] >UniRef100_Q9V114 DNA-directed RNA polymerase n=1 Tax=Pyrococcus abyssi RepID=Q9V114_PYRAB Length = 907 Score = 75.9 bits (185), Expect = 2e-12 Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = +1 Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378 E + +D+ L+ + RPE ++L LPVPP+ RP++ + + EDDLT KL +I+ Sbjct: 191 EKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTARPSITLETGIRA-EDDLTHKLVDII 249 Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552 +N L ++I G P +++ D + LQ ++N++ + +PP + +PL+ ++QRL Sbjct: 250 RINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308 [230][TOP] >UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio RepID=UPI0000546D90 Length = 1972 Score = 75.5 bits (184), Expect = 2e-12 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 8/153 (5%) Frame = +1 Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +R+ +L V +D L+P R +F+ + E+ ++ M RPE +I+ Sbjct: 189 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVT 248 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L Sbjct: 249 VLPVPPLAVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLL 307 Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 Q A ++++ LP + + +PL+ I QRL Sbjct: 308 QFHVATMVDNELPGLPRAMQKSGRPLKSIKQRL 340 [231][TOP] >UniRef100_UPI0001A2D831 POLR2A protein n=1 Tax=Danio rerio RepID=UPI0001A2D831 Length = 563 Score = 75.5 bits (184), Expect = 2e-12 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 8/153 (5%) Frame = +1 Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +R+ +L V +D L+P R +F+ + E+ ++ M RPE +I+ Sbjct: 189 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVT 248 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L Sbjct: 249 VLPVPPLAVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLL 307 Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 Q A ++++ LP + + +PL+ I QRL Sbjct: 308 QFHVATMVDNELPGLPRAMQKSGRPLKSIKQRL 340 [232][TOP] >UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata RepID=Q9AXN0_9RHOD Length = 1746 Score = 75.5 bits (184), Expect = 2e-12 Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 1/125 (0%) Frame = +1 Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360 + L++F+ ++ +D+ ++ + RPE IL PVPP IRP+V D S EDDLT Sbjct: 192 KVLSIFKHISDDDIEIMGLSPQHSRPEWFILTLFPVPPPHIRPSVMMDASMRG-EDDLTY 250 Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL-ASTAKPLRG 537 KL +IV N AL + G PA L + LQ MN+D +P + +P++ Sbjct: 251 KLGDIVRNNNALREMERTGAPAHRLNEQIHVLQAHIITIMNNDLPGMPRAHQKSGRPIKS 310 Query: 538 ISQRL 552 ISQRL Sbjct: 311 ISQRL 315 [233][TOP] >UniRef100_Q5CWY0 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium parvum RepID=Q5CWY0_CRYPV Length = 1871 Score = 75.5 bits (184), Expect = 2e-12 Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 3/133 (2%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 +DL P+ L E + +D+ +++ +P L++ LPVPP CIRP+V S GS Sbjct: 214 EDLTPIFVQTLLERVPYQDLDILETF----KPGNLLISRLPVPPNCIRPSVTMGES-GSN 268 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519 EDDLT+ L+EI +N + + G L+ E+LQ++ R +N+DA + L ++ Sbjct: 269 EDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGVNQLLASK 328 Query: 520 --AKPLRGISQRL 552 K RG+ QRL Sbjct: 329 NIPKAGRGVCQRL 341 [234][TOP] >UniRef100_Q5CK97 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis RepID=Q5CK97_CRYHO Length = 1869 Score = 75.5 bits (184), Expect = 2e-12 Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 3/133 (2%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 +DL P+ L E + +D+ +++ +P L++ LPVPP CIRP+V S GS Sbjct: 214 EDLTPIFVQTLLERVPYQDLDILETF----KPGNLLISRLPVPPNCIRPSVTMGES-GSN 268 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519 EDDLT+ L+EI +N + + G L+ E+LQ++ R +N+DA + L ++ Sbjct: 269 EDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGVNQLLASK 328 Query: 520 --AKPLRGISQRL 552 K RG+ QRL Sbjct: 329 NIPKAGRGVCQRL 341 [235][TOP] >UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3RM26_TRIAD Length = 1784 Score = 75.5 bits (184), Expect = 2e-12 Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 8/153 (5%) Frame = +1 Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +RN +L ++ +D L R +F+ ++ ED ++ M RP+ +I+ Sbjct: 180 RRNGLELTAEWKKINEDSQERKINLTAERVYEIFKRISDEDSEVLGMDPRFARPDWMIIT 239 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 LPVPPL +RP+V SA S +DDLT KL +I+ N L ++ + G PA ++ + L Sbjct: 240 CLPVPPLHVRPSVVMHGSARS-QDDLTHKLADIIKANNNLQRNESCGAPAHVITEDTRML 298 Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 Q +++ +P + + +PL+ I QRL Sbjct: 299 QFHVTTLTDNEVPGMPKAMQKSGRPLKSIKQRL 331 [236][TOP] >UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium replicatum RepID=Q2PYS3_9FUNG Length = 981 Score = 75.5 bits (184), Expect = 2e-12 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%) Frame = +1 Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360 + LALFE+++ D + + RPE +I++ L VPPL +RP+V D G +EDDLT Sbjct: 112 KVLALFESISESDQEAMGLSPEWARPEWMIIQVLLVPPLSVRPSVHMD-GMGRSEDDLTH 170 Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRG 537 KL +I+ N L K G P L+ D LQ A +MN++ + +P + +P++ Sbjct: 171 KLMDIIKANNNLRKHEADGSPPHLVTDLESILQYHVATYMNNELSGVPTATQKSGRPIKS 230 Query: 538 ISQRL 552 I RL Sbjct: 231 IRDRL 235 [237][TOP] >UniRef100_Q1W1U5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Fistulina antarctica RepID=Q1W1U5_9APHY Length = 411 Score = 75.5 bits (184), Expect = 2e-12 Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L+P A+F+ ++ +D++++ + RPE +IL LPVPP +RP++ D +ED Sbjct: 129 LSPSEVYAIFKKISDDDLSMLGLSEEYARPEWMILTVLPVPPPPVRPSIAVDGGVMRSED 188 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525 DLT KL +I+ + + + G P ++ + + LQ A +M++D +P L + + Sbjct: 189 DLTYKLGDIIKASANVRRCEQEGAPGHIITEFEQLLQFHVATYMDNDIAGIPQALQKSGR 248 Query: 526 PLRGISQRL 552 P++ I RL Sbjct: 249 PVKAIRARL 257 [238][TOP] >UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB RepID=A1YIB1_9BASI Length = 1013 Score = 75.5 bits (184), Expect = 2e-12 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Frame = +1 Query: 214 EDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEA 393 ED+ ++ + RPE ++L LP+PP +RP++ D A EDDLT KL E++ N+A Sbjct: 153 EDLRIMGLHTEEARPEWMVLTALPIPPPPVRPSIAMDGGATRGEDDLTYKLAEVIKTNKA 212 Query: 394 LAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 L + I G PA ++ + LQ A +M++D P + + +P++ I RL Sbjct: 213 LGEHILAGSPAHIITEFETLLQWHIATYMDNDLPGQPQAMQKSGRPIKSIRARL 266 [239][TOP] >UniRef100_Q1W1V4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Clavulinopsis laeticolor RepID=Q1W1V4_CLALA Length = 413 Score = 75.1 bits (183), Expect = 3e-12 Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Frame = +1 Query: 106 YGDAKRNNADLERHLSRVGDD--LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRY 279 Y KR D E S + D P LF+ +T D+ L+ + RPE IL Sbjct: 110 YVQYKRPKDDDEEVKSALADKRLFTPADIYVLFKKITDTDLDLLGLSGEYARPEWXILTI 169 Query: 280 LPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQ 459 LPVPP +RP++ D +EDDLT KL +I+ + + + G PA ++M+ + LQ Sbjct: 170 LPVPPPPVRPSIAVDGGVMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVIMEFEQLLQ 229 Query: 460 VEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 A +M+++ +P L + +P++ I RL Sbjct: 230 FHVATYMDNNIAGIPQALQKSGRPVKAIRARL 261 [240][TOP] >UniRef100_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTM9_ENTBH Length = 1174 Score = 75.1 bits (183), Expect = 3e-12 Identities = 40/113 (35%), Positives = 67/113 (59%) Frame = +1 Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342 D+LNPL LF+ + D+ + + P L+++ L VPP CIRP+V D G Sbjct: 170 DELNPLTVYNLFKNIKETDLLFLSCK----NPCNLLIKTLLVPPCCIRPSVDMDQD-GFN 224 Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNL 501 EDDLT+KL+EI++ N + ++I G + L + ++LQ++ A ++NSD ++ Sbjct: 225 EDDLTVKLSEIINCNNLIEENIKKGASLITLNEDWDYLQLQIALYINSDLPSI 277 [241][TOP] >UniRef100_A7J591 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anaptychia palmatula RepID=A7J591_9LECA Length = 1020 Score = 75.1 bits (183), Expect = 3e-12 Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST-E 345 + P LA+F M+ ED+ + M RPE +I+ LPVPP +RP++ D G T E Sbjct: 140 ITPAMALAIFLQMSPEDIKTMGMSNDYARPEWMIITVLPVPPPPVRPSIKVDSGDGPTGE 199 Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522 DDLT KL +I+ N + + G PA ++ + LQ A +M++D P L + Sbjct: 200 DDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSG 259 Query: 523 KPLRGISQRL 552 +P++ I RL Sbjct: 260 RPVKAIRARL 269 [242][TOP] >UniRef100_A1YIB2 DNA-directed RNA polymerase (Fragment) n=2 Tax=Smittium culisetae RepID=A1YIB2_SMICU Length = 1025 Score = 75.1 bits (183), Expect = 3e-12 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L L+ L + + ++ DV I M RPE LI+ +PVPP+C+RP++ D + S ED Sbjct: 142 LTVLQVLQVLKKISDTDVRAIGMNPEYARPEWLIISVMPVPPMCVRPSIQMDATRHS-ED 200 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525 DLT KL +I+ N + G P ++ + LQ A F+N+D + +P L + + Sbjct: 201 DLTYKLNDILKANARVRSCEVEGAPQHIIDEFETLLQFHVATFINNDISGIPQALQKSGR 260 Query: 526 PLRGISQRL 552 P++ I RL Sbjct: 261 PIKSIRARL 269 [243][TOP] >UniRef100_A1RWW5 DNA-directed RNA polymerase n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RWW5_THEPD Length = 888 Score = 75.1 bits (183), Expect = 3e-12 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L PL + D+ ++ + RPE ++LR +PV P +RP++ + S +ED Sbjct: 179 LTPLEIWERLSRIPEGDLRVVGIDPKEARPEWMVLRVIPVVPPSVRPSITLE-SGDRSED 237 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525 DLT KL +I+ +N+ L ++I+ G P++++ D LQ A + +++ +PP + + Sbjct: 238 DLTHKLVDIIRVNQRLKENIDAGSPSLVIEDLWNLLQFHVATYFDNELPGIPPARHRSGR 297 Query: 526 PLRGISQRL 552 PLR ++QRL Sbjct: 298 PLRTLAQRL 306 [244][TOP] >UniRef100_B3T7L4 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote HF4000_APKG3E18 RepID=B3T7L4_9ARCH Length = 1273 Score = 75.1 bits (183), Expect = 3e-12 Identities = 41/136 (30%), Positives = 80/136 (58%), Gaps = 2/136 (1%) Frame = +1 Query: 151 SRVGDD-LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDP 327 +++G++ L P+ F +T +D+ L++ RPE IL+ LPVPP+ +RP++ + Sbjct: 176 TKLGENRLLPITIRERFSQITDDDLRLLNYNVDTARPEWFILQALPVPPVTVRPSIILE- 234 Query: 328 SAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPP 507 S +EDDLT K+ +I+ +N+ L +S G P +++ D + LQ + +++ + +P Sbjct: 235 SGIRSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHCTTYFDNEVSGIPQ 294 Query: 508 L-ASTAKPLRGISQRL 552 + +PL+ ++QRL Sbjct: 295 AHHRSGRPLKTLTQRL 310 [245][TOP] >UniRef100_B3T303 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote HF4000_ANIW93I24 RepID=B3T303_9ARCH Length = 1264 Score = 75.1 bits (183), Expect = 3e-12 Identities = 40/129 (31%), Positives = 74/129 (57%), Gaps = 1/129 (0%) Frame = +1 Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348 L P+ F +T +D+ L++ RPE IL+ LPVPP+ +RP++ + S +ED Sbjct: 178 LLPITIRERFLQITDDDLELVNYNTATARPEWFILQALPVPPVTVRPSIILE-SGIRSED 236 Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL-ASTAK 525 DLT K+ +I+ +N+ L +S G P +++ D + LQ + +++ + +P + + Sbjct: 237 DLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHCTTYFDNEVSGIPQAHHRSGR 296 Query: 526 PLRGISQRL 552 PL+ ++QRL Sbjct: 297 PLKTLTQRL 305 [246][TOP] >UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1 (RNA polymerase II subunit B1) (DNA-directed RNA polymerase II subunit A) (DNA-directed RNA polymerase III largest subunit) n=1 Tax=Equus caballus RepID=UPI0001796DD3 Length = 1834 Score = 74.7 bits (182), Expect = 4e-12 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Frame = +1 Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+ Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310 Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 Q A ++++ LP + + +PL+ + QRL Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343 [247][TOP] >UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2 Length = 1970 Score = 74.7 bits (182), Expect = 4e-12 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Frame = +1 Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+ Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310 Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 Q A ++++ LP + + +PL+ + QRL Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343 [248][TOP] >UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648 Length = 1913 Score = 74.7 bits (182), Expect = 4e-12 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Frame = +1 Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+ Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310 Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 Q A ++++ LP + + +PL+ + QRL Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343 [249][TOP] >UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) n=1 Tax=Macaca mulatta RepID=UPI0000D9E16B Length = 1193 Score = 74.7 bits (182), Expect = 4e-12 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Frame = +1 Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+ Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310 Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 Q A ++++ LP + + +PL+ + QRL Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343 [250][TOP] >UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0B2C Length = 1888 Score = 74.7 bits (182), Expect = 4e-12 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Frame = +1 Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276 +R+ +L V +D L+P R +F+ ++ E+ ++ M RPE +I+ Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251 Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456 LPVPPL +RP V SA +DDLT KL +IV +N L ++ G A ++ + + L Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310 Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552 Q A ++++ LP + + +PL+ + QRL Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343