AU191719 ( PFL020e09_r )

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[1][TOP]
>UniRef100_Q86AQ5 DNA-directed RNA polymerase III subunit rpc1 n=1 Tax=Dictyostelium
           discoideum RepID=RPC1_DICDI
          Length = 1450

 Score =  127 bits (320), Expect = 4e-28
 Identities = 64/149 (42%), Positives = 99/149 (66%)
 Frame = +1

Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLP 285
           Y DA + N +++ H+ +  DDLNPL  L LF+ ++ +D+ +++M  V GRPERLIL Y+ 
Sbjct: 191 YDDAIKYNPEMKSHIKKAQDDLNPLVALNLFKKISYQDIEIMNMDPVIGRPERLILTYML 250

Query: 286 VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVE 465
           VPP+ IRP+V  D  +G+ EDDLTMKL+EI+H+NE +  +++    +  +M+  ++LQ  
Sbjct: 251 VPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNVDRAEMSA-IMEDWDYLQAS 309

Query: 466 AARFMNSDATNLPPLASTAKPLRGISQRL 552
            A ++NSD   LP      K +RG+SQRL
Sbjct: 310 CAIYINSDVPGLPLQMKPTKAVRGLSQRL 338

[2][TOP]
>UniRef100_C9SQ00 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Verticillium
           albo-atrum VaMs.102 RepID=C9SQ00_9PEZI
          Length = 1456

 Score =  124 bits (310), Expect = 6e-27
 Identities = 65/170 (38%), Positives = 100/170 (58%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           Y K T  +          ++++ +AK+ N DL++HL +  +DLNPLR L LF+ ++  D 
Sbjct: 188 YNKSTSMKKVPPESKIVFDASFDEAKKQNPDLDKHLRKAMEDLNPLRVLNLFKTISPTDC 247

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
            L+ +  V GRPE  I ++LP PP+CIRP+V  D +  STEDDLT KL +IV ++  +  
Sbjct: 248 ELLGLDPVEGRPEMFIWQFLPAPPVCIRPSVAQDNA--STEDDLTTKLADIVWISGMIRL 305

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           ++  G P   +M+  E+LQ++ A ++NSD   L       K +RG  QRL
Sbjct: 306 ALQKGSPVQTIMEQWEYLQLQIAMYVNSDVPGLQQ-PGFGKTVRGFCQRL 354

[3][TOP]
>UniRef100_A7EYX3 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980
           UF-70 RepID=A7EYX3_SCLS1
          Length = 1459

 Score =  124 bits (310), Expect = 6e-27
 Identities = 64/170 (37%), Positives = 100/170 (58%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           Y K T  +       A  + ++ +AK+NN +LE+H+ +V +DL+PLR L LF+ +T  D 
Sbjct: 189 YNKSTAAKKVAPPGMAEYQKSFEEAKKNNTELEKHVKKVYEDLHPLRVLNLFKLITPSDC 248

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
            L+ +    GRPE  + +++P PP+CIRP+V  D   GS EDDLT KL EIV+M+  +  
Sbjct: 249 ELLGINPAEGRPEMFLWQFVPAPPICIRPSVAQD--GGSNEDDLTAKLAEIVNMSSLIRA 306

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           ++  G     +M+  ++LQ++ A ++NSD   L       K +RG  QRL
Sbjct: 307 ALQKGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQ-PGFGKAIRGFCQRL 355

[4][TOP]
>UniRef100_Q1DVM7 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
           RepID=Q1DVM7_COCIM
          Length = 1430

 Score =  122 bits (306), Expect = 2e-26
 Identities = 64/152 (42%), Positives = 95/152 (62%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +AKR+N D+E+H  +V DDLNPLR L LF  ++ ED  L+ +     RPE  + +
Sbjct: 211 DRSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISDEDCELLGLNPEEVRPEMFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+ IRP+V  +    STEDDLT KL +IV  N  L  +IN G P   +++  +++
Sbjct: 271 YIPAPPVSIRPSVGQE--GASTEDDLTAKLGDIVQSNINLKNAINKGAPVQTIIECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RGI QRL
Sbjct: 329 QLQIAVYINSDVPGLQK-ADFGKPIRGICQRL 359

[5][TOP]
>UniRef100_C5PCH6 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735
           delta SOWgp RepID=C5PCH6_COCP7
          Length = 1444

 Score =  122 bits (306), Expect = 2e-26
 Identities = 64/152 (42%), Positives = 95/152 (62%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +AKR+N D+E+H  +V DDLNPLR L LF  ++ ED  L+ +     RPE  + +
Sbjct: 211 DRSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISDEDCELLGLNPEEVRPEMFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+ IRP+V  +    STEDDLT KL +IV  N  L  +IN G P   +++  +++
Sbjct: 271 YIPAPPVSIRPSVGQE--GASTEDDLTAKLGDIVQSNINLKNAINKGAPVQTIIECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RGI QRL
Sbjct: 329 QLQIAVYINSDVPGLQK-ADFGKPIRGICQRL 359

[6][TOP]
>UniRef100_C4JWU1 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
           RepID=C4JWU1_UNCRE
          Length = 1435

 Score =  122 bits (306), Expect = 2e-26
 Identities = 64/158 (40%), Positives = 96/158 (60%)
 Frame = +1

Query: 79  AKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRP 258
           A     + ++ +AKR+N D+E+H  +V DDLNPLR L LF  ++ ED  L+ +     RP
Sbjct: 205 ASKLVFDQSFEEAKRSNTDIEKHFKKVQDDLNPLRVLKLFRRISNEDCELLGLNPKEVRP 264

Query: 259 ERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLM 438
           E  + +++P PP+ IRP+V  +    STEDDLT KL +IV  N  L  +IN G P   ++
Sbjct: 265 EMFLWQFIPAPPVSIRPSVGQE--GASTEDDLTAKLGDIVQSNINLKNAINKGAPVQTII 322

Query: 439 DGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           +  +++Q++ A ++NSD   L   A   KP+RGI QRL
Sbjct: 323 ECWDYMQLQIAVYINSDVPGLQK-ADFGKPIRGICQRL 359

[7][TOP]
>UniRef100_O94666 DNA-directed RNA polymerase III subunit rpc1 n=1
           Tax=Schizosaccharomyces pombe RepID=RPC1_SCHPO
          Length = 1405

 Score =  122 bits (306), Expect = 2e-26
 Identities = 61/150 (40%), Positives = 95/150 (63%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++ +A +   +L+ HLS+  DDLNPL+ L LF+ +T  D  L+ M    GRPE L+ RY+
Sbjct: 192 SFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDCELLGMDPEHGRPENLLWRYV 251

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
           P PP+CIRP+V  +    +TEDDLT+K+TEI+  +  +  +++ G P   LM+  E++Q+
Sbjct: 252 PAPPVCIRPSVAQE--GATTEDDLTVKITEIIWTSSLIRAALSKGTPISNLMEQWEFMQL 309

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
             A ++NS+   L P    +KP+RG  QRL
Sbjct: 310 SIAMYINSEMPGLRPSDMPSKPIRGFCQRL 339

[8][TOP]
>UniRef100_C1MN08 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MN08_9CHLO
          Length = 1591

 Score =  121 bits (303), Expect = 4e-26
 Identities = 65/150 (43%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
 Frame = +1

Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLP 285
           + +A + N  L+++LSRV DDLNP+R +++F  ++  D  L+D   +  RPE LIL +LP
Sbjct: 215 FEEAVKFNDQLKQNLSRVQDDLNPIRVISIFRRISPMDCELLD---IADRPEHLILTHLP 271

Query: 286 VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVE 465
           VPP+CIRP+V  D  AGS EDD+TMKL +I+ +N  L + +  G     LM+  ++LQV+
Sbjct: 272 VPPVCIRPSVEMDGVAGSNEDDITMKLIQIIEVNNVLRQGLEKGLAIANLMENWDFLQVQ 331

Query: 466 AARFMNSDATNLP-PLASTAKPLRGISQRL 552
            A + NS+   L        KPLRG  QRL
Sbjct: 332 IAMYFNSELPGLSLQYQGPGKPLRGFVQRL 361

[9][TOP]
>UniRef100_B6K857 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
           yFS275 RepID=B6K857_SCHJY
          Length = 1406

 Score =  120 bits (302), Expect = 5e-26
 Identities = 65/159 (40%), Positives = 92/159 (57%)
 Frame = +1

Query: 76  QAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGR 255
           Q +      ++  A +   DL  HL +  DDLNPLR L LF+ +T  D  L+ M    GR
Sbjct: 183 QEEGGEFRQSFDQALKAMPDLRPHLHKAHDDLNPLRVLNLFKQITPMDCELLGMDPEKGR 242

Query: 256 PERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLL 435
           PE L+ +Y+P PP+ IRPTV  +    +TEDD+T+KLTEIV  +  +  ++N G P   L
Sbjct: 243 PENLLWQYMPAPPVTIRPTVAQE--GATTEDDITIKLTEIVWTSSLIRAALNKGTPINSL 300

Query: 436 MDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           M+  E+LQ+  A ++NS+   L P    +KP RG  QRL
Sbjct: 301 MEQWEFLQLSVALYINSELPGLRPPDMPSKPTRGFCQRL 339

[10][TOP]
>UniRef100_B7PVV6 DNA-directed RNA polymerase n=1 Tax=Ixodes scapularis
           RepID=B7PVV6_IXOSC
          Length = 1394

 Score =  119 bits (299), Expect = 1e-25
 Identities = 66/174 (37%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
 Frame = +1

Query: 34  INLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD-LNPLRTLALFEAMT 210
           + L  +  K   +  A  A     + +A+  N +L+  + +V  D LNPL  L LF  + 
Sbjct: 172 LKLVHERFKATKKNDAMLAEFLEDFDEARGYNPELDSVMGKVTSDILNPLVVLHLFRRIL 231

Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390
            EDV L+ M    GRPE LIL  +PVPPLCIRP+V S+  AG+ EDD+T+KLTEI+ +N+
Sbjct: 232 DEDVPLLVMNPKCGRPEDLILTRIPVPPLCIRPSVVSELKAGTNEDDVTVKLTEIIFLND 291

Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            + +    G    ++M+  ++LQ++ A ++NS+ + +P      KP RG  QRL
Sbjct: 292 VIQRHRASGAKMQMIMEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRL 345

[11][TOP]
>UniRef100_A5DM42 DNA-directed RNA polymerase n=1 Tax=Pichia guilliermondii
           RepID=A5DM42_PICGU
          Length = 1379

 Score =  119 bits (299), Expect = 1e-25
 Identities = 71/161 (44%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
 Frame = +1

Query: 91  AMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERL 267
           A +  + +    N ++E+   RV DDLNPL+ L LF+ +T +D  L  + A  GGRPE  
Sbjct: 126 AWDQEFDEVFARNPEVEKFAKRVHDDLNPLKVLNLFKQITPQDCELFGIDASRGGRPEMY 185

Query: 268 ILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGX 447
           I RYLP PP+CIRP+V  D  A S EDD+T+KLTEIV  +  +   I  G     LM+  
Sbjct: 186 IWRYLPAPPVCIRPSVMMD--AQSNEDDITVKLTEIVWTSSLIKAGIEKGISINNLMEQW 243

Query: 448 EWLQVEAARFMNSDATN---LPPL---ASTAKPLRGISQRL 552
           ++LQ+  A ++NSDA N   LP +   A +AKP+RG  QRL
Sbjct: 244 DYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRL 284

[12][TOP]
>UniRef100_UPI000023CDC4 hypothetical protein FG09860.1 n=1 Tax=Gibberella zeae PH-1
            RepID=UPI000023CDC4
          Length = 2443

 Score =  119 bits (298), Expect = 2e-25
 Identities = 62/170 (36%), Positives = 96/170 (56%)
 Frame = +1

Query: 43   YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
            Y K T  +          ++++ +AKR N +L++HL +  +DLNPLR L LF+ ++  D 
Sbjct: 1183 YNKSTSIKKTPPESKIKFDNSFNEAKRENPELDKHLRKAMEDLNPLRVLNLFKMISPTDC 1242

Query: 223  ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
             L+ +    GRPE  I ++LP PP+CIRP+V  D +  S EDD+T KL +IV ++  +  
Sbjct: 1243 ELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA--SNEDDITTKLADIVWVSGMIRS 1300

Query: 403  SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            ++  G P   +M+  E+LQ + A ++NSD   L       K  RG  QRL
Sbjct: 1301 ALQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQ-PGFGKTTRGFCQRL 1349

[13][TOP]
>UniRef100_A8IFE0 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
           RepID=A8IFE0_CHLRE
          Length = 1167

 Score =  119 bits (298), Expect = 2e-25
 Identities = 67/148 (45%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
 Frame = +1

Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291
           DA + N  L+ HL R+ DDL+PLR  ALFEA+  ED+ L+D++   GRPE L++ ++ VP
Sbjct: 461 DAMKYNDQLKGHLHRLADDLHPLRVRALFEAIPDEDLDLLDIQ---GRPEDLVVTHVAVP 517

Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471
           P+ IRP+V  D    S EDD+TMKL +I+ +N  L + +  G P   LM+  ++LQV+AA
Sbjct: 518 PVAIRPSVEMD--GASNEDDITMKLMQIIEVNNVLRQGLEKGLPISNLMENWDFLQVQAA 575

Query: 472 RFMNSDATNLP-PLASTAKPLRGISQRL 552
             +NSD   LP       +PLRG  QRL
Sbjct: 576 MLINSDLPGLPAQFQMPGRPLRGFVQRL 603

[14][TOP]
>UniRef100_A7TNS6 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM
           70294 RepID=A7TNS6_VANPO
          Length = 1460

 Score =  119 bits (298), Expect = 2e-25
 Identities = 70/151 (46%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
 Frame = +1

Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297
           NN +LER   R  DDLNPL+TL LF+ +  ED  L  ID     GRPE  I RYLP PP+
Sbjct: 207 NNPELERFAKRSMDDLNPLKTLNLFKQIRPEDCELLGIDSTVKAGRPETYIWRYLPAPPV 266

Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
           CIRP+V    S  S EDDLT+KLTEIV  +  +   +  G     +M+  ++LQ+  A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEHWDYLQLSVAMY 326

Query: 478 MNSDATN--LPPLAST----AKPLRGISQRL 552
           +NSD+ N  + P AS+    AKP+RG  QRL
Sbjct: 327 INSDSVNPSMMPGASSGGAKAKPIRGFCQRL 357

[15][TOP]
>UniRef100_B3RW43 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
           RepID=B3RW43_TRIAD
          Length = 941

 Score =  119 bits (297), Expect = 2e-25
 Identities = 65/148 (43%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
 Frame = +1

Query: 112 DAKRNNADLERHL-SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPV 288
           DA  +N DLE  + S+  + LNPL  L LF  M+ ED  L+ M+   GRPE LI+  L V
Sbjct: 199 DAVESNKDLENFVASKSQEILNPLLVLKLFSGMSDEDCLLVGMKPNNGRPEDLIIERLLV 258

Query: 289 PPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEA 468
           PPLCIRP+V +D   GS EDDLTMKLTEI+ +++ + +S   G    +LM+  + LQ+  
Sbjct: 259 PPLCIRPSVMTDSQMGSNEDDLTMKLTEIILISDYINRSRQNGAKIQILMELWDNLQIHV 318

Query: 469 ARFMNSDATNLPPLASTAKPLRGISQRL 552
           + ++NS+ + LP  +   +P+RG  QRL
Sbjct: 319 SLYINSETSGLPYGSQPNRPIRGFCQRL 346

[16][TOP]
>UniRef100_A6SCV1 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10
           RepID=A6SCV1_BOTFB
          Length = 1468

 Score =  119 bits (297), Expect = 2e-25
 Identities = 63/170 (37%), Positives = 99/170 (58%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           Y K T  +       A  + ++ +AK++N +LE+H+ +V +DL+PLR L LF+ +T  D 
Sbjct: 186 YNKSTAAKKVVPPGMAEYQKSFEEAKKHNTELEKHVKKVYEDLHPLRVLNLFKLITPSDC 245

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
            L+ +    GRPE  + +++P PP+CIRP+V  D   GS EDD+T KL EIV M   L  
Sbjct: 246 ELLGINPAEGRPEMFLWQFVPAPPICIRPSVQQD--GGSNEDDITTKLAEIVSMASLLRA 303

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           +++ G     +M+  ++LQ++ A ++NSD   L       K +RG  QRL
Sbjct: 304 ALHKGQAVQTIMEQWDFLQLQIAMYVNSDVPGLQQ-PGFGKAIRGFCQRL 352

[17][TOP]
>UniRef100_Q6FKG9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
           RepID=Q6FKG9_CANGA
          Length = 1459

 Score =  118 bits (296), Expect = 3e-25
 Identities = 67/151 (44%), Positives = 94/151 (62%), Gaps = 8/151 (5%)
 Frame = +1

Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVG--GRPERLILRYLPVPPL 297
           +N +LER++ R  DDLNPL+TL LF+ + +ED  L+ + A    GRPE  I RY+P PP+
Sbjct: 207 HNPELERYVKRATDDLNPLKTLNLFKQIASEDCELLGIDATNKAGRPETYIWRYIPAPPV 266

Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
           CIRP+V    S  S EDDLT+KLTEIV  +  +   I  G     +M+  ++LQ+  A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGIEKGISINNMMEHWDYLQMTVAMY 326

Query: 478 MNSDATN--LPPLAST----AKPLRGISQRL 552
           +NSD+ N  + P +ST     KP+RG  QRL
Sbjct: 327 INSDSINPAMLPGSSTGGGKVKPIRGFCQRL 357

[18][TOP]
>UniRef100_Q6CMC7 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
           RepID=Q6CMC7_KLULA
          Length = 1457

 Score =  118 bits (296), Expect = 3e-25
 Identities = 71/161 (44%), Positives = 96/161 (59%), Gaps = 9/161 (5%)
 Frame = +1

Query: 97  ESAYGDAKR---NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPE 261
           E   GD K+   NN +LER++ R  DDLNPL+ L LF+ +   D  L  ID  +  GRPE
Sbjct: 195 EQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDSTSKSGRPE 254

Query: 262 RLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMD 441
             I RYLP PP+CIRP+V    S  S EDDLT+KLTEIV  +  +   +  G     +M+
Sbjct: 255 TYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMME 314

Query: 442 GXEWLQVEAARFMNSDATN---LPPLAST-AKPLRGISQRL 552
             ++LQ+  A ++NSD+ N   LP  + T +KP+RG  QRL
Sbjct: 315 QWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRL 355

[19][TOP]
>UniRef100_C7YT68 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI
           77-13-4 RepID=C7YT68_NECH7
          Length = 1449

 Score =  118 bits (296), Expect = 3e-25
 Identities = 62/172 (36%), Positives = 97/172 (56%)
 Frame = +1

Query: 37  NLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAE 216
           + Y K T  +          ++++ +AKR N +L++HL +  +DLNPLR L LF+ ++  
Sbjct: 188 SFYNKSTSVKKVPPESKIKFDNSFTEAKRENPELDKHLRKAMEDLNPLRVLNLFKMISPT 247

Query: 217 DVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEAL 396
           D  L+ +    GRPE  I ++LP PP+CIRP+V  D +  S EDD+T KL +IV ++  +
Sbjct: 248 DCELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNA--SNEDDITTKLADIVWVSGMI 305

Query: 397 AKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
             ++  G P   +M+  E+LQ + A ++NSD   L       K  RG  QRL
Sbjct: 306 RSALQKGSPVQTIMEQWEYLQTQIAMYVNSDVPGLQQ-PGFGKATRGFCQRL 356

[20][TOP]
>UniRef100_C1GGI7 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
           Pb18 RepID=C1GGI7_PARBD
          Length = 1458

 Score =  118 bits (296), Expect = 3e-25
 Identities = 59/152 (38%), Positives = 94/152 (61%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +AK++N ++E+H  +  DDL+PLR L LF  ++ ED  L+ +     RPE  + +
Sbjct: 211 DRSFEEAKKSNPEIEKHFKKAHDDLHPLRVLKLFRRISNEDCELLGLNPAEARPEVFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+CIRP+V  +  A STEDDLT KL +I+  N  L  ++N G P   +++  + +
Sbjct: 271 YIPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNMNLKNALNKGAPVQTIIECWDHM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359

[21][TOP]
>UniRef100_C4R7G6 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
           RepID=C4R7G6_PICPG
          Length = 1460

 Score =  118 bits (295), Expect = 3e-25
 Identities = 67/152 (44%), Positives = 90/152 (59%), Gaps = 9/152 (5%)
 Frame = +1

Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERLILRYLPVPPLC 300
           NN DLE+ L R  DDLNPL+ L LF+ +   D  L+ +    GGRPE  + RY+P PP+C
Sbjct: 207 NNPDLEKFLKRAYDDLNPLKVLNLFKQVDPSDCELLGIDTTRGGRPEMYLWRYVPAPPVC 266

Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
           IRP+V    S  S EDDLT+KLTEIV ++  +   I  G     L++  ++LQ+  A ++
Sbjct: 267 IRPSVLMSDSNTSNEDDLTVKLTEIVWISSLIRAGIEKGISINNLIEQWDYLQLSVAMYI 326

Query: 481 NSDATNLPPLASTA--------KPLRGISQRL 552
           NSDA N+  L S A        KP+RG  QRL
Sbjct: 327 NSDAGNMSMLPSAAGSAGSKSSKPIRGFCQRL 358

[22][TOP]
>UniRef100_UPI000155D900 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
           155kDa n=1 Tax=Equus caballus RepID=UPI000155D900
          Length = 1390

 Score =  117 bits (294), Expect = 4e-25
 Identities = 63/150 (42%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AEDV L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[23][TOP]
>UniRef100_UPI0000DA3EBF PREDICTED: similar to polymerase (RNA) III (DNA directed)
           polypeptide A, 155kDa n=1 Tax=Rattus norvegicus
           RepID=UPI0000DA3EBF
          Length = 1390

 Score =  117 bits (294), Expect = 4e-25
 Identities = 63/150 (42%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AEDV L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[24][TOP]
>UniRef100_UPI0000DA3DE9 PREDICTED: similar to polymerase (RNA) III (DNA directed)
           polypeptide A, 155kDa n=2 Tax=Rattus norvegicus
           RepID=UPI0000DA3DE9
          Length = 1362

 Score =  117 bits (294), Expect = 4e-25
 Identities = 63/150 (42%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AEDV L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[25][TOP]
>UniRef100_UPI00004BFD05 PREDICTED: similar to polymerase (RNA) III (DNA directed)
           polypeptide A, 155kDa n=1 Tax=Canis lupus familiaris
           RepID=UPI00004BFD05
          Length = 1390

 Score =  117 bits (294), Expect = 4e-25
 Identities = 63/150 (42%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AEDV L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[26][TOP]
>UniRef100_UPI0000EB3E23 DNA-directed RNA polymerase III subunit RPC1 (EC 2.7.7.6) (RNA
           polymerase III subunit C1) (DNA-directed RNA polymerase
           III subunit A) (DNA-directed RNA polymerase III largest
           subunit) (RPC155) (C160). n=1 Tax=Canis lupus familiaris
           RepID=UPI0000EB3E23
          Length = 1393

 Score =  117 bits (294), Expect = 4e-25
 Identities = 63/150 (42%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AEDV L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[27][TOP]
>UniRef100_Q7TSI4 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=Q7TSI4_MOUSE
          Length = 649

 Score =  117 bits (294), Expect = 4e-25
 Identities = 63/150 (42%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AEDV L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[28][TOP]
>UniRef100_B2RXC6 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=B2RXC6_MOUSE
          Length = 1390

 Score =  117 bits (294), Expect = 4e-25
 Identities = 63/150 (42%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AEDV L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[29][TOP]
>UniRef100_B7Z6H4 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B7Z6H4_HUMAN
          Length = 1369

 Score =  117 bits (294), Expect = 4e-25
 Identities = 63/150 (42%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AEDV L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[30][TOP]
>UniRef100_O14802 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Homo sapiens
           RepID=RPC1_HUMAN
          Length = 1390

 Score =  117 bits (294), Expect = 4e-25
 Identities = 63/150 (42%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AEDV L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[31][TOP]
>UniRef100_UPI00019259E0 PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra
           magnipapillata RepID=UPI00019259E0
          Length = 534

 Score =  117 bits (293), Expect = 6e-25
 Identities = 61/171 (35%), Positives = 100/171 (58%)
 Frame = +1

Query: 40  LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAED 219
           L++K   T   +       ++++ +A   N +L+   S++   LNPL+   +F+ +T ED
Sbjct: 175 LHEKYKTTRKVDDGIITDFKNSFNEAIVYNKELDGITSKMNLVLNPLKVFHIFQNITEED 234

Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399
             L+ M    GRPE LI+  +PVPP CIRP+V S+  AGS EDDLTMKLTE++ +N+ + 
Sbjct: 235 CYLLGMVPASGRPEDLIITRVPVPPACIRPSVISELQAGSNEDDLTMKLTEMIFLNDVIR 294

Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           K  + G    ++M+  ++LQ++ A ++N + + +P      K  RG  QRL
Sbjct: 295 KHRSTGAKVQIIMEDWDFLQLQCALYINGEMSGIPMNMQPKKATRGFVQRL 345

[32][TOP]
>UniRef100_UPI00017EFF90 PREDICTED: similar to polymerase (RNA) III (DNA directed)
           polypeptide A, 155kDa n=1 Tax=Sus scrofa
           RepID=UPI00017EFF90
          Length = 1390

 Score =  117 bits (293), Expect = 6e-25
 Identities = 62/150 (41%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AED+ L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[33][TOP]
>UniRef100_UPI000151B46E DNA-directed RNA polymerase III largest subunit n=1 Tax=Pichia
           guilliermondii ATCC 6260 RepID=UPI000151B46E
          Length = 1379

 Score =  117 bits (293), Expect = 6e-25
 Identities = 70/161 (43%), Positives = 96/161 (59%), Gaps = 7/161 (4%)
 Frame = +1

Query: 91  AMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERL 267
           A +  + +    N ++E+   RV DDLNPL+ L LF+ +T +D  L  + A  GGRPE  
Sbjct: 126 AWDQEFDEVFARNPEVEKFAKRVHDDLNPLKVLNLFKQITPQDCELFGIDASRGGRPEMY 185

Query: 268 ILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGX 447
           I RYLP PP+CIRP+V  D  A   EDD+T+KLTEIV  +  +   I  G     LM+  
Sbjct: 186 IWRYLPAPPVCIRPSVMMD--AQLNEDDITVKLTEIVWTSSLIKAGIEKGISINNLMEQW 243

Query: 448 EWLQVEAARFMNSDATN---LPPL---ASTAKPLRGISQRL 552
           ++LQ+  A ++NSDA N   LP +   A +AKP+RG  QRL
Sbjct: 244 DYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRL 284

[34][TOP]
>UniRef100_UPI00003AE23E polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1
           Tax=Gallus gallus RepID=UPI00003AE23E
          Length = 1390

 Score =  117 bits (293), Expect = 6e-25
 Identities = 62/150 (41%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AED+ L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[35][TOP]
>UniRef100_C5DJG5 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS
           6340 RepID=C5DJG5_LACTC
          Length = 1460

 Score =  117 bits (293), Expect = 6e-25
 Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 7/150 (4%)
 Frame = +1

Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297
           +N +LER++ +  DDLNPL+TL LF+ +  ED  L  ID     GRPE  I RYLP PP+
Sbjct: 207 HNPELERYVKKCMDDLNPLKTLNLFKQVAPEDCELLGIDSTVKSGRPETYIWRYLPAPPV 266

Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
           CIRP+V    S  S EDDLT+KLTEIV  +  +   +  G     +M+  ++LQ+  A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQLAVAMY 326

Query: 478 MNSDATN--LPPLAST---AKPLRGISQRL 552
           +NSD+ N  + P  ST    KP+RG  QRL
Sbjct: 327 INSDSVNPAMMPGGSTGGKTKPIRGFCQRL 356

[36][TOP]
>UniRef100_Q5ZL98 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Gallus gallus
           RepID=RPC1_CHICK
          Length = 1390

 Score =  117 bits (293), Expect = 6e-25
 Identities = 62/150 (41%), Positives = 94/150 (62%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L LF+ + AED+ L+ M    G+P  LIL  L
Sbjct: 196 SFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRL 255

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 256 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 315

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 316 QCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[37][TOP]
>UniRef100_UPI0001923A0F PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra
           magnipapillata RepID=UPI0001923A0F
          Length = 391

 Score =  117 bits (292), Expect = 7e-25
 Identities = 61/171 (35%), Positives = 100/171 (58%)
 Frame = +1

Query: 40  LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAED 219
           L++K   T   +       ++++ +A   N +L+   S++   LNPL+   +F+ +T ED
Sbjct: 121 LHEKYKTTRKVDDGIITDFKNSFNEAIVYNKELDGITSKMNLVLNPLKVFHIFQNITDED 180

Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399
             L+ M    GRPE LI+  +PVPP CIRP+V S+  AGS EDDLTMKLTE++ +N+ + 
Sbjct: 181 CYLLGMVPASGRPEDLIITRVPVPPACIRPSVISELQAGSNEDDLTMKLTEMIFLNDVIR 240

Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           K  + G    ++M+  ++LQ++ A ++N + + +P      K  RG  QRL
Sbjct: 241 KHRSTGAKVQIIMEDWDFLQLQCALYINGEMSGIPMNMQPKKATRGFVQRL 291

[38][TOP]
>UniRef100_C1E5P6 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
           RepID=C1E5P6_9CHLO
          Length = 1479

 Score =  117 bits (292), Expect = 7e-25
 Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 1/185 (0%)
 Frame = +1

Query: 1   GAGGGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPL 180
           GA    GA+  I   K     EL E     A    + +A ++N  L+ +L+RV DDLNP+
Sbjct: 185 GAVKRTGASLKIVHEKYSKNPELME-----AYVKEFEEAVKHNDQLKANLARVQDDLNPI 239

Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
           R  ++   ++  D  L+D   V  RPE LIL +LPVPP+CIRP+V  +  AGS EDD+TM
Sbjct: 240 RVESILSKISPMDCELLD---VADRPEHLILTHLPVPPVCIRPSVEMEGQAGSNEDDITM 296

Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNL-PPLASTAKPLRG 537
           KL +I+ +N  L + +  G     LM+  ++LQ++ A ++NS+   L        KPLRG
Sbjct: 297 KLIQIIEVNNVLRQGLEKGLAINNLMENWDFLQIQCAMYINSELPGLSAQYQGPGKPLRG 356

Query: 538 ISQRL 552
             QRL
Sbjct: 357 FVQRL 361

[39][TOP]
>UniRef100_C6HPI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus H143
           RepID=C6HPI8_AJECH
          Length = 1333

 Score =  117 bits (292), Expect = 7e-25
 Identities = 58/152 (38%), Positives = 95/152 (62%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +AK++N D+++H  +  DDL+PLR L LF +++ ED  L+ +     RPE  + +
Sbjct: 178 DKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLNPEEARPEVFLWQ 237

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+CIRP+V  +  A STEDDLT KL +I+  N  L  ++  G P   +++  +++
Sbjct: 238 YVPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTIIECWDYM 295

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 296 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 326

[40][TOP]
>UniRef100_C5JRK1 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis
           SLH14081 RepID=C5JRK1_AJEDS
          Length = 1456

 Score =  117 bits (292), Expect = 7e-25
 Identities = 58/152 (38%), Positives = 95/152 (62%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +AK++N D+E+H  +  DDL+PLR L LF +++ +D  L+ +     RPE  + +
Sbjct: 211 DQSFEEAKKSNPDIEKHFKKAHDDLHPLRVLKLFRSVSDKDCELLGLNPEEARPEVFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+CIRP+V  +  A STEDDLT KL +I+  N  L  ++  G P   +++  +++
Sbjct: 271 YIPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALYKGAPVQTIIECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359

[41][TOP]
>UniRef100_C5GRI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3
           RepID=C5GRI8_AJEDR
          Length = 1456

 Score =  117 bits (292), Expect = 7e-25
 Identities = 58/152 (38%), Positives = 95/152 (62%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +AK++N D+E+H  +  DDL+PLR L LF +++ +D  L+ +     RPE  + +
Sbjct: 211 DQSFEEAKKSNPDIEKHFKKAHDDLHPLRVLKLFRSVSDKDCELLGLNPEEARPEVFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+CIRP+V  +  A STEDDLT KL +I+  N  L  ++  G P   +++  +++
Sbjct: 271 YIPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALYKGAPVQTIIECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359

[42][TOP]
>UniRef100_C0NZL8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
           RepID=C0NZL8_AJECG
          Length = 1456

 Score =  117 bits (292), Expect = 7e-25
 Identities = 58/152 (38%), Positives = 95/152 (62%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +AK++N D+++H  +  DDL+PLR L LF +++ ED  L+ +     RPE  + +
Sbjct: 211 DKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLNPEEARPEVFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+CIRP+V  +  A STEDDLT KL +I+  N  L  ++  G P   +++  +++
Sbjct: 271 YVPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTIIECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359

[43][TOP]
>UniRef100_A6RGX8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
           RepID=A6RGX8_AJECN
          Length = 1439

 Score =  117 bits (292), Expect = 7e-25
 Identities = 58/152 (38%), Positives = 95/152 (62%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +AK++N D+++H  +  DDL+PLR L LF +++ ED  L+ +     RPE  + +
Sbjct: 211 DKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLNPEEARPEVFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+CIRP+V  +  A STEDDLT KL +I+  N  L  ++  G P   +++  +++
Sbjct: 271 YVPAPPVCIRPSVGQE--AASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTIIECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 359

[44][TOP]
>UniRef100_UPI0000612BF9 UPI0000612BF9 related cluster n=1 Tax=Bos taurus
           RepID=UPI0000612BF9
          Length = 1392

 Score =  116 bits (291), Expect = 1e-24
 Identities = 65/169 (38%), Positives = 103/169 (60%)
 Frame = +1

Query: 46  KKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225
           K  T  ++ +   S+ ++S +  A  +N ++E  L +  ++LNPL  L LF+ + AED+ 
Sbjct: 178 KYKTNKKVVDPIVSSFLQS-FETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIP 236

Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405
           L+ M    G+P  LIL  L VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K 
Sbjct: 237 LLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKH 296

Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
              G    ++M+  ++LQ++ A ++NS+ + +P   +  K  RG  QRL
Sbjct: 297 RISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[45][TOP]
>UniRef100_A4IF62 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Bos taurus
           RepID=RPC1_BOVIN
          Length = 1390

 Score =  116 bits (291), Expect = 1e-24
 Identities = 65/169 (38%), Positives = 103/169 (60%)
 Frame = +1

Query: 46  KKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225
           K  T  ++ +   S+ ++S +  A  +N ++E  L +  ++LNPL  L LF+ + AED+ 
Sbjct: 178 KYKTNKKVVDPIVSSFLQS-FETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDIP 236

Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405
           L+ M    G+P  LIL  L VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K 
Sbjct: 237 LLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKH 296

Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
              G    ++M+  ++LQ++ A ++NS+ + +P   +  K  RG  QRL
Sbjct: 297 RISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[46][TOP]
>UniRef100_UPI0001554E8D PREDICTED: similar to Polymerase (RNA) III (DNA directed)
           polypeptide A, 155kDa n=1 Tax=Ornithorhynchus anatinus
           RepID=UPI0001554E8D
          Length = 1382

 Score =  116 bits (290), Expect = 1e-24
 Identities = 61/142 (42%), Positives = 90/142 (63%)
 Frame = +1

Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306
           N ++E  L R  ++LNPL  L LF+ + AED+ L+ M    G+P  LIL  L VPPLCIR
Sbjct: 196 NKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIR 255

Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNS 486
           P+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ++ A ++NS
Sbjct: 256 PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINS 315

Query: 487 DATNLPPLASTAKPLRGISQRL 552
           + + +P   +  K  RG  QRL
Sbjct: 316 ELSGIPLNMAPKKWTRGFVQRL 337

[47][TOP]
>UniRef100_UPI0000F2AF25 PREDICTED: similar to Proteasome (prosome, macropain) subunit,
           alpha type, 2 n=1 Tax=Monodelphis domestica
           RepID=UPI0000F2AF25
          Length = 1390

 Score =  116 bits (290), Expect = 1e-24
 Identities = 61/142 (42%), Positives = 90/142 (63%)
 Frame = +1

Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306
           N ++E  L R  ++LNPL  L LF+ + AED+ L+ M    G+P  LIL  L VPPLCIR
Sbjct: 204 NKEVEPLLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIR 263

Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNS 486
           P+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ++ A ++NS
Sbjct: 264 PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINS 323

Query: 487 DATNLPPLASTAKPLRGISQRL 552
           + + +P   +  K  RG  QRL
Sbjct: 324 ELSGIPLNMAPKKWTRGFVQRL 345

[48][TOP]
>UniRef100_UPI000069FEE9 DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)
           (RPC155) (RPC1). n=1 Tax=Xenopus (Silurana) tropicalis
           RepID=UPI000069FEE9
          Length = 477

 Score =  116 bits (290), Expect = 1e-24
 Identities = 61/150 (40%), Positives = 92/150 (61%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L L   + AED+ L+ M    G+P  LIL  L
Sbjct: 195 SFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRL 254

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 255 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQL 314

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 315 QCALYINSELSGIPMNMAPKKWTRGFVQRL 344

[49][TOP]
>UniRef100_Q7ZXW5 DNA-directed RNA polymerase n=1 Tax=Xenopus laevis
           RepID=Q7ZXW5_XENLA
          Length = 489

 Score =  116 bits (290), Expect = 1e-24
 Identities = 61/150 (40%), Positives = 92/150 (61%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L L   + AED+ L+ M    G+P  LIL  L
Sbjct: 195 SFDTAIEHNKEVESLLGRAQENLNPLVVLNLLRRIPAEDIPLLLMNPEAGKPSDLILTRL 254

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 255 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQL 314

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 315 QCALYINSELSGIPMNMAPKKWTRGFVQRL 344

[50][TOP]
>UniRef100_A4IHM8 DNA-directed RNA polymerase n=1 Tax=Xenopus (Silurana) tropicalis
           RepID=A4IHM8_XENTR
          Length = 1390

 Score =  116 bits (290), Expect = 1e-24
 Identities = 61/150 (40%), Positives = 92/150 (61%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R  ++LNPL  L L   + AED+ L+ M    G+P  LIL  L
Sbjct: 195 SFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRL 254

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 255 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQL 314

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 315 QCALYINSELSGIPMNMAPKKWTRGFVQRL 344

[51][TOP]
>UniRef100_Q5KFV9 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
           RepID=Q5KFV9_CRYNE
          Length = 1466

 Score =  115 bits (289), Expect = 2e-24
 Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 4/162 (2%)
 Frame = +1

Query: 79  AKSAAME----SAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV 246
           AK A+M+    + + +A   N  +  HL++  DDLNPL+ L LFE +TAED  L+ +   
Sbjct: 192 AKMASMKDEWMATFKNAVAENQAVATHLAKAVDDLNPLKVLNLFERITAEDCELLSLHPE 251

Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426
            GRPE  I +Y+ VPP CIRP+V S+  AG+ EDDLT KL EIV+ N  LA  ++LG   
Sbjct: 252 VGRPEDYIWQYISVPPPCIRPSVASE--AGNNEDDLTAKLAEIVNYNNTLALMMDLGRGI 309

Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            ++    E L    A ++NS A  +  + S  KP+RG  QRL
Sbjct: 310 EMISSNWEVLGQAVALYINSQAPGMQTIGS--KPIRGFVQRL 349

[52][TOP]
>UniRef100_Q55QA7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
           RepID=Q55QA7_CRYNE
          Length = 1466

 Score =  115 bits (289), Expect = 2e-24
 Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 4/162 (2%)
 Frame = +1

Query: 79  AKSAAME----SAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV 246
           AK A+M+    + + +A   N  +  HL++  DDLNPL+ L LFE +TAED  L+ +   
Sbjct: 192 AKMASMKDEWMATFKNAVAENQAVATHLAKAVDDLNPLKVLNLFERITAEDCELLSLHPE 251

Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426
            GRPE  I +Y+ VPP CIRP+V S+  AG+ EDDLT KL EIV+ N  LA  ++LG   
Sbjct: 252 VGRPEDYIWQYISVPPPCIRPSVASE--AGNNEDDLTAKLAEIVNYNNTLALMMDLGRGI 309

Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            ++    E L    A ++NS A  +  + S  KP+RG  QRL
Sbjct: 310 EMISSNWEVLGQAVALYINSQAPGMQTIGS--KPIRGFVQRL 349

[53][TOP]
>UniRef100_C7GMM0 Rpo31p n=1 Tax=Saccharomyces cerevisiae JAY291 RepID=C7GMM0_YEAS2
          Length = 1460

 Score =  115 bits (289), Expect = 2e-24
 Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
 Frame = +1

Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297
           +N +LER++ R  DDLNPL+TL LF+ + + D  L  ID     GRPE  I RYLP PP+
Sbjct: 207 HNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPV 266

Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
           CIRP+V    S  S EDDLT+KLTEIV  +  +   ++ G     +M+  ++LQ+  A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMY 326

Query: 478 MNSDATNLPPLASTA------KPLRGISQRL 552
           +NSD+ N   L  ++      KP+RG  QRL
Sbjct: 327 INSDSVNPAMLPGSSNGGGKVKPIRGFCQRL 357

[54][TOP]
>UniRef100_B3LJF9 DNA-directed RNA polymerase n=3 Tax=Saccharomyces cerevisiae
           RepID=B3LJF9_YEAS1
          Length = 1460

 Score =  115 bits (289), Expect = 2e-24
 Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
 Frame = +1

Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297
           +N +LER++ R  DDLNPL+TL LF+ + + D  L  ID     GRPE  I RYLP PP+
Sbjct: 207 HNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPV 266

Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
           CIRP+V    S  S EDDLT+KLTEIV  +  +   ++ G     +M+  ++LQ+  A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMY 326

Query: 478 MNSDATNLPPLASTA------KPLRGISQRL 552
           +NSD+ N   L  ++      KP+RG  QRL
Sbjct: 327 INSDSVNPAMLPGSSNGGGKVKPIRGFCQRL 357

[55][TOP]
>UniRef100_P04051 DNA-directed RNA polymerase III subunit RPC1 n=2 Tax=Saccharomyces
           cerevisiae RepID=RPC1_YEAST
          Length = 1460

 Score =  115 bits (289), Expect = 2e-24
 Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
 Frame = +1

Query: 124 NNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPL 297
           +N +LER++ R  DDLNPL+TL LF+ + + D  L  ID     GRPE  I RYLP PP+
Sbjct: 207 HNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPV 266

Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
           CIRP+V    S  S EDDLT+KLTEIV  +  +   ++ G     +M+  ++LQ+  A +
Sbjct: 267 CIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMY 326

Query: 478 MNSDATNLPPLASTA------KPLRGISQRL 552
           +NSD+ N   L  ++      KP+RG  QRL
Sbjct: 327 INSDSVNPAMLPGSSNGGGKVKPIRGFCQRL 357

[56][TOP]
>UniRef100_UPI00018665E5 hypothetical protein BRAFLDRAFT_127993 n=1 Tax=Branchiostoma
           floridae RepID=UPI00018665E5
          Length = 1391

 Score =  115 bits (288), Expect = 2e-24
 Identities = 58/152 (38%), Positives = 95/152 (62%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +S++  A  +N ++E  + R  ++LNP+  L +F  +  +D+  + M A  GRP+ +IL 
Sbjct: 194 QSSFQSAVEHNKEIEGLIPRAQENLNPMVALHMFSRIPHQDLPFLIMDAEHGRPQDMILT 253

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            L VPPLCIRP+V ++  AG+ EDD+TMKLTEI+ +N+ + K    G  A ++M+  ++L
Sbjct: 254 RLLVPPLCIRPSVSTELKAGTNEDDVTMKLTEILFLNDVIQKHRATGARAQMIMEDWDFL 313

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NS+   +P      KP RG  QRL
Sbjct: 314 QLQCALYINSEQGGIPLNMQPKKPTRGFCQRL 345

[57][TOP]
>UniRef100_Q0V3B7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0V3B7_PHANO
          Length = 1473

 Score =  115 bits (288), Expect = 2e-24
 Identities = 62/170 (36%), Positives = 99/170 (58%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           + + T    +  A     + ++  AK  N DL++HL +  DD++PLRTL LF+ ++ ED 
Sbjct: 193 FNRSTAKTKKPPAGKIEFDQSFETAKAANPDLDKHLKKAVDDMHPLRTLNLFKKISPEDC 252

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
            L+ M     RPE LI  Y+PVPP+ +RP+V  +   G+TEDD+T K+ +I  ++  +  
Sbjct: 253 ELLAMIPEDARPEMLIWEYMPVPPVALRPSVMQE--GGATEDDVTNKIGDICQISSIIRA 310

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            +  G P  +LM+  ++LQ++ A ++NSDA  L       K +RG SQRL
Sbjct: 311 GLARGFPLQILMEQWDFLQLQIAMYINSDAPGLKQ-QGLQKTMRGFSQRL 359

[58][TOP]
>UniRef100_C5DY31 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS
           732 RepID=C5DY31_ZYGRC
          Length = 1458

 Score =  115 bits (288), Expect = 2e-24
 Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
 Frame = +1

Query: 4   AGGGRGAARSIN-LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPL 180
           AGGG  + + I+  ++   K  + E+ K       +     ++ +LER++ R  DDLNPL
Sbjct: 169 AGGGSASLKIIHDTFRWAGKKSVPEKEKWIG---DWDSVLAHSPELERYVKRCMDDLNPL 225

Query: 181 RTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDL 354
           +TL LF+ +  ED  L  ID     GRPE  I RYLP PP+CIRP+V    S  S EDDL
Sbjct: 226 KTLNLFKQVKPEDCELLGIDSTIKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDL 285

Query: 355 TMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA----STA 522
           T+KLTE+V  +  +   +  G     +M+  ++LQ+  A ++NSD+ N   L+       
Sbjct: 286 TVKLTEVVWTSSLIKAGLEKGISINNMMEHWDYLQLAVAMYINSDSVNPAILSGGTGGKV 345

Query: 523 KPLRGISQRL 552
           KP+RG  QRL
Sbjct: 346 KPIRGFCQRL 355

[59][TOP]
>UniRef100_A3GEY3 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
           RepID=A3GEY3_PICST
          Length = 1448

 Score =  115 bits (288), Expect = 2e-24
 Identities = 76/196 (38%), Positives = 105/196 (53%), Gaps = 13/196 (6%)
 Frame = +1

Query: 4   AGGGRGAARSIN-----LYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD 168
           +G G  A + ++     + KKPT        +    +  +      N +LE+   RV DD
Sbjct: 169 SGAGPAALKIVHDTFRWIGKKPTP-------EKEYWDKEFDQVLSRNPELEKFAKRVYDD 221

Query: 169 LNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
           LNPL+TL LF+ +T  D  L  +  A GGRPE  I RYLP PP+CIRP+V  D    S E
Sbjct: 222 LNPLKTLNLFKQITPSDCELFGLDPARGGRPEMYIWRYLPAPPVCIRPSVMMDSQ--SNE 279

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS--- 516
           DDLT+KLTEIV  +  +   I  G     LM+  ++LQ+  A ++NSD+ N   L S   
Sbjct: 280 DDLTVKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYINSDSANPALLPSSGG 339

Query: 517 ----TAKPLRGISQRL 552
               ++KP+RG  QRL
Sbjct: 340 GGSKSSKPIRGFCQRL 355

[60][TOP]
>UniRef100_UPI00017B08B5 UPI00017B08B5 related cluster n=1 Tax=Tetraodon nigroviridis
           RepID=UPI00017B08B5
          Length = 1391

 Score =  115 bits (287), Expect = 3e-24
 Identities = 63/146 (43%), Positives = 91/146 (62%)
 Frame = +1

Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
           A  +N  LE  LSR  ++LNPL  L LF+ ++ ED+ L+ M    G P  LIL  L VPP
Sbjct: 202 AIEHNKVLEPLLSRAQENLNPLVVLNLFKRISREDIPLLLMNPEAGIPADLILTRLLVPP 261

Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
           LCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ++ A 
Sbjct: 262 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 321

Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
           ++NS+ + +P   +  K  RG  QRL
Sbjct: 322 YINSELSGIPLNMAPKKWTRGFVQRL 347

[61][TOP]
>UniRef100_Q4S3H6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon
           nigroviridis RepID=Q4S3H6_TETNG
          Length = 1319

 Score =  115 bits (287), Expect = 3e-24
 Identities = 63/146 (43%), Positives = 91/146 (62%)
 Frame = +1

Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
           A  +N  LE  LSR  ++LNPL  L LF+ ++ ED+ L+ M    G P  LIL  L VPP
Sbjct: 144 AIEHNKVLEPLLSRAQENLNPLVVLNLFKRISREDIPLLLMNPEAGIPADLILTRLLVPP 203

Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
           LCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ++ A 
Sbjct: 204 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 263

Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
           ++NS+ + +P   +  K  RG  QRL
Sbjct: 264 YINSELSGIPLNMAPKKWTRGFVQRL 289

[62][TOP]
>UniRef100_C4YGE6 DNA-directed RNA polymerase n=1 Tax=Candida albicans
           RepID=C4YGE6_CANAL
          Length = 1448

 Score =  115 bits (287), Expect = 3e-24
 Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
 Frame = +1

Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303
           N +LE+   R+ DDLNPL+TL LF+ +T +D  L  +  A GGRPE  I RYLP PP+CI
Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267

Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
           RP+V  D  A S EDDLT+KLTEIV  +  +   I  G     LM+  ++LQ+  A ++N
Sbjct: 268 RPSVMMD--AQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325

Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552
           SD+ N P L      A ++KP+R   QRL
Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353

[63][TOP]
>UniRef100_B9WF61 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
           RepID=B9WF61_CANDC
          Length = 1448

 Score =  115 bits (287), Expect = 3e-24
 Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
 Frame = +1

Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303
           N +LE+   R+ DDLNPL+TL LF+ +T +D  L  +  A GGRPE  I RYLP PP+CI
Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267

Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
           RP+V  D  A S EDDLT+KLTEIV  +  +   I  G     LM+  ++LQ+  A ++N
Sbjct: 268 RPSVMMD--AQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325

Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552
           SD+ N P L      A ++KP+R   QRL
Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353

[64][TOP]
>UniRef100_B6H2R1 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum
           Wisconsin 54-1255 RepID=B6H2R1_PENCW
          Length = 1448

 Score =  115 bits (287), Expect = 3e-24
 Identities = 60/152 (39%), Positives = 92/152 (60%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           ++++ +A+  N ++E+H  +  DD+NPLR L LF+ M+  D  LI M     RPE  + +
Sbjct: 211 DNSFLEARGANPEVEKHFKKAQDDMNPLRVLKLFKKMSDSDCELIGMNPKEARPEMFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           ++P PP+CIRP+V  D    STEDDLT KL +IV  N  L  ++  G P   +M+  +++
Sbjct: 271 FIPAPPVCIRPSVGQD--GASTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359

[65][TOP]
>UniRef100_Q6BI69 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Debaryomyces
           hansenii RepID=RPC1_DEBHA
          Length = 1457

 Score =  115 bits (287), Expect = 3e-24
 Identities = 67/159 (42%), Positives = 95/159 (59%), Gaps = 7/159 (4%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDM-RAVGGRPERLIL 273
           +  + +    N +LE+ + R+ DDLNPL+ L LF+ ++  D  L+ +  A GGRPE  I 
Sbjct: 198 DKEFDEVFSRNPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELLGIDSARGGRPEMYIW 257

Query: 274 RYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEW 453
           RYLP PP+CIRP+V  D  A S EDDLT+KLTEIV  +  +   I  G     LM+  ++
Sbjct: 258 RYLPAPPVCIRPSVMMD--AQSNEDDLTIKLTEIVWTSSLIKAGIEKGISINNLMEQWDY 315

Query: 454 LQVEAARFMNSDATNLPPLAS------TAKPLRGISQRL 552
           LQ+  A ++NSD+ N   L S      ++KP+RG  QRL
Sbjct: 316 LQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRL 354

[66][TOP]
>UniRef100_UPI000194C79C PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
           155kDa n=1 Tax=Taeniopygia guttata RepID=UPI000194C79C
          Length = 1390

 Score =  114 bits (286), Expect = 4e-24
 Identities = 60/142 (42%), Positives = 89/142 (62%)
 Frame = +1

Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306
           N ++E  L R  ++LNPL  L LF+ +  ED+ L+ M    G+P  LIL  L VPPLCIR
Sbjct: 204 NKEVEPLLGRAQENLNPLVVLNLFKRIPVEDIPLLLMNPQAGKPSDLILTRLLVPPLCIR 263

Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNS 486
           P+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ++ A ++NS
Sbjct: 264 PSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINS 323

Query: 487 DATNLPPLASTAKPLRGISQRL 552
           + + +P   +  K  RG  QRL
Sbjct: 324 ELSGIPLNMAPKKWTRGFVQRL 345

[67][TOP]
>UniRef100_UPI00015A5DDB PREDICTED: im:7139382 n=1 Tax=Danio rerio RepID=UPI00015A5DDB
          Length = 1390

 Score =  114 bits (286), Expect = 4e-24
 Identities = 69/178 (38%), Positives = 107/178 (60%)
 Frame = +1

Query: 19  GAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALF 198
           G  + I+   K TK ++ + A S  ++S +  A  +N ++E  L+R  ++LNPL  L LF
Sbjct: 170 GLLKIIHEKYKSTK-KVVDPAVSDFLQS-FDVAIEHNKEVESLLTRAQENLNPLVVLNLF 227

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
             +  +DV L+ M    G+P  LIL  L VPPLCIRP+V SD  +G+ EDDLTMKLTEI+
Sbjct: 228 RRIPDKDVPLLLMNPESGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEII 287

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            +N+ + K    G    ++M+  ++LQ++ A ++NS+ + +P   +  K  RG  QRL
Sbjct: 288 FLNDVIKKHRMTGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRL 345

[68][TOP]
>UniRef100_UPI00003BE6A5 hypothetical protein DEHA0G13849g n=1 Tax=Debaryomyces hansenii
           CBS767 RepID=UPI00003BE6A5
          Length = 1457

 Score =  114 bits (286), Expect = 4e-24
 Identities = 67/149 (44%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
 Frame = +1

Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDM-RAVGGRPERLILRYLPVPPLCI 303
           N +LE+ + R+ DDLNPL+ L LF+ ++  D  L+ +  A GGRPE  I RYLP PP+CI
Sbjct: 208 NPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELLGIDSARGGRPEMYIWRYLPAPPVCI 267

Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
           RP+V  D  A S EDDLT+KLTEIV  +  +   I  G     LM+  ++LQ+  A ++N
Sbjct: 268 RPSVMMD--AQSNEDDLTIKLTEIVWTSSLIKAGIEKGISINNLMEQWDYLQLSVAMYIN 325

Query: 484 SDATNLPPLAS------TAKPLRGISQRL 552
           SD+ N   L S      ++KP+RG  QRL
Sbjct: 326 SDSANPALLPSSGGGSKSSKPIRGFCQRL 354

[69][TOP]
>UniRef100_Q01DV6 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
           RepID=Q01DV6_OSTTA
          Length = 1406

 Score =  114 bits (285), Expect = 5e-24
 Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 1/147 (0%)
 Frame = +1

Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
           A + N  L   L +V DDLNP+R L++ + +T +D  L+D   +  RPE L+L +LPVPP
Sbjct: 217 ALKYNEQLRASLPKVQDDLNPIRVLSILQRITDQDCELLD---IADRPEHLLLTHLPVPP 273

Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
            CIRP+V  D  +GS EDD+TMKL +I+ +N  L + +  G     LM+  ++LQ++ A 
Sbjct: 274 CCIRPSVEMDGVSGSNEDDITMKLIQIIEVNNVLRQGLEKGLTINNLMENWDFLQIQCAM 333

Query: 475 FMNSDATNLP-PLASTAKPLRGISQRL 552
           ++NS+   L        KPLRG  QRL
Sbjct: 334 YINSELPGLSLQYQGPGKPLRGFVQRL 360

[70][TOP]
>UniRef100_A1CLD8 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
           RepID=A1CLD8_ASPCL
          Length = 1449

 Score =  114 bits (285), Expect = 5e-24
 Identities = 59/152 (38%), Positives = 93/152 (61%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +A+ +NA++E+H  +  DD+N LR L LF+ ++  D  L+ +     RPE  + +
Sbjct: 211 DRSFDEARNSNAEVEKHYKKAQDDMNALRVLNLFKKISDTDCELLGLNPKEARPEMFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           ++P PP+CIRP+V  D  A STEDDLT KL +IV  N  L  S+  G P   +M+  +++
Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNSLLKGAPVQTIMECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359

[71][TOP]
>UniRef100_Q5A164 DNA-directed RNA polymerase n=1 Tax=Candida albicans
           RepID=Q5A164_CANAL
          Length = 1448

 Score =  114 bits (284), Expect = 6e-24
 Identities = 68/149 (45%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
 Frame = +1

Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303
           N +LE+   R+ DDLNPL+TL LF+ +T +D  L  +  A GGRPE  I RYLP PP+CI
Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267

Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
           RP+V  D  + S EDDLT+KLTEIV  +  +   I  G     LM+  ++LQ+  A ++N
Sbjct: 268 RPSVMMD--SQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325

Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552
           SD+ N P L      A ++KP+R   QRL
Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353

[72][TOP]
>UniRef100_Q5A0Z3 DNA-directed RNA polymerase n=1 Tax=Candida albicans
           RepID=Q5A0Z3_CANAL
          Length = 1448

 Score =  114 bits (284), Expect = 6e-24
 Identities = 68/149 (45%), Positives = 92/149 (61%), Gaps = 7/149 (4%)
 Frame = +1

Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPLCI 303
           N +LE+   R+ DDLNPL+TL LF+ +T +D  L  +  A GGRPE  I RYLP PP+CI
Sbjct: 208 NPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGLDPAKGGRPEMYIWRYLPAPPVCI 267

Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
           RP+V  D  + S EDDLT+KLTEIV  +  +   I  G     LM+  ++LQ+  A ++N
Sbjct: 268 RPSVMMD--SQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYIN 325

Query: 484 SDATNLPPL------ASTAKPLRGISQRL 552
           SD+ N P L      A ++KP+R   QRL
Sbjct: 326 SDSAN-PALSTGGGGAKSSKPIRAFCQRL 353

[73][TOP]
>UniRef100_Q0CS43 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
           RepID=Q0CS43_ASPTN
          Length = 1450

 Score =  114 bits (284), Expect = 6e-24
 Identities = 64/170 (37%), Positives = 97/170 (57%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           Y   T T+        A + +  +A+R+N ++E+H  +  DDLN LR L LF+ ++  D 
Sbjct: 193 YNISTSTKKVLPPGKGAFDDSLMEARRHNPEVEKHHKKAQDDLNALRVLNLFKRISDTDC 252

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
            L+ +     RPE  + +++P PP+CIRP+V  D  A STEDDLT KL +IV  N  L  
Sbjct: 253 ELLGLNPREARPEMFLWQFIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKN 310

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           S+  G P   +M+  +++Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 311 SLLKGAPVHTIMECWDYMQLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359

[74][TOP]
>UniRef100_B2VYJ3 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
           Pt-1C-BFP RepID=B2VYJ3_PYRTR
          Length = 1471

 Score =  114 bits (284), Expect = 6e-24
 Identities = 64/175 (36%), Positives = 101/175 (57%)
 Frame = +1

Query: 28  RSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAM 207
           RS    KKP   +L         + ++  AK  N D+++H+ +  DD++PLR L LF+ +
Sbjct: 195 RSTAKTKKPPPGKLE-------FDQSFDTAKSANPDVDKHVKKAVDDMHPLRALNLFKKI 247

Query: 208 TAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMN 387
           + ED  L+ M     RPE LI  Y+PVPP+ +RP+V  +   G+TEDD+T K+ +I H++
Sbjct: 248 SPEDCELLAMVPEDARPEMLIWEYMPVPPVALRPSVMQE--GGATEDDVTNKIGDICHIS 305

Query: 388 EALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
             +   +  G P  +LM+  ++LQ++ A ++NSDA  L       K +RG SQRL
Sbjct: 306 SIIRAGLARGFPLQILMEQWDFLQLQIAMYINSDAPGLKQ-QGLQKTMRGFSQRL 359

[75][TOP]
>UniRef100_UPI00016E6B7B UPI00016E6B7B related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016E6B7B
          Length = 649

 Score =  113 bits (283), Expect = 8e-24
 Identities = 62/146 (42%), Positives = 90/146 (61%)
 Frame = +1

Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
           A  +N  LE  LSR  ++LNPL    LF+ ++ ED+ L+ M    G P  LIL  L VPP
Sbjct: 200 AIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPEAGTPADLILTRLLVPP 259

Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
           LCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ++ A 
Sbjct: 260 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 319

Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
           ++NS+ + +P   +  K  RG  QRL
Sbjct: 320 YINSELSGIPLNMAPKKWTRGFVQRL 345

[76][TOP]
>UniRef100_UPI00016E6B7A UPI00016E6B7A related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016E6B7A
          Length = 1320

 Score =  113 bits (283), Expect = 8e-24
 Identities = 62/146 (42%), Positives = 90/146 (61%)
 Frame = +1

Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
           A  +N  LE  LSR  ++LNPL    LF+ ++ ED+ L+ M    G P  LIL  L VPP
Sbjct: 144 AIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPEAGTPADLILTRLLVPP 203

Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
           LCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ++ A 
Sbjct: 204 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 263

Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
           ++NS+ + +P   +  K  RG  QRL
Sbjct: 264 YINSELSGIPLNMAPKKWTRGFVQRL 289

[77][TOP]
>UniRef100_UPI00016E6B79 UPI00016E6B79 related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016E6B79
          Length = 1390

 Score =  113 bits (283), Expect = 8e-24
 Identities = 62/146 (42%), Positives = 90/146 (61%)
 Frame = +1

Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
           A  +N  LE  LSR  ++LNPL    LF+ ++ ED+ L+ M    G P  LIL  L VPP
Sbjct: 200 AIEHNKVLEPLLSRAQENLNPLVVRNLFKRISREDIPLLLMNPEAGTPADLILTRLLVPP 259

Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
           LCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ++ A 
Sbjct: 260 LCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCAL 319

Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
           ++NS+ + +P   +  K  RG  QRL
Sbjct: 320 YINSELSGIPLNMAPKKWTRGFVQRL 345

[78][TOP]
>UniRef100_A4RTE2 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus
           CCE9901 RepID=A4RTE2_OSTLU
          Length = 1395

 Score =  113 bits (283), Expect = 8e-24
 Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
 Frame = +1

Query: 115 AKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
           A + N  L   L +V DDLNP+R L + + +T+ D  L+D   +  RPE L+L +LPVPP
Sbjct: 216 ALKYNEQLRASLPKVQDDLNPIRVLGILQRVTSADCELLD---IADRPEHLLLTHLPVPP 272

Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
            CIRP+V  D  +GS EDD+TMKL +I+ +N  L + +  G     +M+  ++LQ++ A 
Sbjct: 273 CCIRPSVEMDGVSGSNEDDITMKLIQIIEVNNVLRQGLEKGLAVNNMMENWDFLQIQCAM 332

Query: 475 FMNSDATNLP-PLASTAKPLRGISQRL 552
           ++NS+   L        KPLRG  QRL
Sbjct: 333 YINSELPGLSLQYQGPGKPLRGFVQRL 359

[79][TOP]
>UniRef100_C5FEK3 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
           RepID=C5FEK3_NANOT
          Length = 1443

 Score =  113 bits (282), Expect = 1e-23
 Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 2/156 (1%)
 Frame = +1

Query: 91  AMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLI 270
           A + ++ +AK++N D+E+H  RV DDLNPLR L LF  ++ ED  L+ +     RPE  +
Sbjct: 208 AFDRSFEEAKKSNPDIEKHYRRVFDDLNPLRVLKLFRRISDEDCELLSLNVDEARPEYFL 267

Query: 271 LRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXE 450
            +++P PP+ IRP+V  +    STEDDLT KL +IV  N  L  +++ G P   +++  +
Sbjct: 268 WQFIPAPPVPIRPSVGQE--GASTEDDLTAKLGDIVQSNLNLKMALDKGAPVQTIIECWD 325

Query: 451 WLQVEAARFMNSDATNLPPLAST--AKPLRGISQRL 552
           ++Q++ A ++NSD   +P L +T   K +RG+ QRL
Sbjct: 326 YMQLQIAVYINSD---IPGLQNTDSKKSIRGLCQRL 358

[80][TOP]
>UniRef100_A5E7R0 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
           RepID=A5E7R0_LODEL
          Length = 1450

 Score =  112 bits (281), Expect = 1e-23
 Identities = 66/153 (43%), Positives = 93/153 (60%), Gaps = 11/153 (7%)
 Frame = +1

Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERLILRYLPVPPLCI 303
           N +LE++  R+ +D NPL+TL LF+ +T  D  L  M  + GGRPE  I RYLP PP+CI
Sbjct: 209 NPELEKYAKRITEDFNPLKTLNLFKQITPSDCELFGMDPLRGGRPEMYIWRYLPAPPVCI 268

Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
           RP+V  D  A S EDDLT+KLTEIV  +  +   I  G     LM+  ++LQ+  A ++N
Sbjct: 269 RPSVMMD--AQSNEDDLTVKLTEIVWTSSMIKAGIAKGISMNNLMEQWDYLQLSVAMYIN 326

Query: 484 SDATN---LPPL-------ASTAKPLRGISQRL 552
           SD+ N   +P +       + ++KP+RG  QRL
Sbjct: 327 SDSANPALIPSVGGGGGGGSKSSKPIRGFCQRL 359

[81][TOP]
>UniRef100_A2QU24 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
           RepID=A2QU24_ASPNC
          Length = 1450

 Score =  112 bits (281), Expect = 1e-23
 Identities = 58/152 (38%), Positives = 93/152 (61%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +A+ +NA++E+H  +  DD+N LR L LF+ ++  D  L+ +     RPE  + +
Sbjct: 211 DRSFDEARTSNAEVEKHYKKAQDDMNALRVLNLFKKISDTDCELLGLNPKEARPEMFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           ++P PP+CIRP+V  D  A STEDDLT KL +IV  N  L  ++  G P   +M+  +++
Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359

[82][TOP]
>UniRef100_C5MI79 DNA-directed RNA polymerase (Fragment) n=1 Tax=Candida tropicalis
           MYA-3404 RepID=C5MI79_CANTT
          Length = 1159

 Score =  112 bits (280), Expect = 2e-23
 Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 7/151 (4%)
 Frame = +1

Query: 121 RNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMR-AVGGRPERLILRYLPVPPL 297
           + N +L + + R+ DDLNPL+TL LF+ +T  D  L  +  A GGRPE  I RYLP PP+
Sbjct: 206 QRNPELSKFVKRIHDDLNPLKTLNLFKQITPSDCELFGLDPAKGGRPEMYIWRYLPAPPV 265

Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
           CIRP+V  D  A S EDDLT+KLTEIV  +  +   I  G     LM+  +++Q+  A +
Sbjct: 266 CIRPSVMMD--AQSNEDDLTVKLTEIVWTSSMIKAGILKGISINNLMEQWDYMQLSVAMY 323

Query: 478 MNSDATNLPPL------ASTAKPLRGISQRL 552
           +NSD+ N P L      A  +KP+R   QRL
Sbjct: 324 INSDSAN-PALSAGGGGAKASKPIRAFCQRL 353

[83][TOP]
>UniRef100_A8Q6K6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
           RepID=A8Q6K6_MALGO
          Length = 1376

 Score =  112 bits (279), Expect = 2e-23
 Identities = 66/172 (38%), Positives = 99/172 (57%), Gaps = 3/172 (1%)
 Frame = +1

Query: 46  KKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225
           +K T+ E  E  K+ +   + G     N +L  HL++  +DLNPLR L LF  ++ ED  
Sbjct: 158 QKKTEEEQLEFRKTFSTAVSMG-----NGELAPHLNKAQEDLNPLRVLDLFRRISDEDCE 212

Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405
           L+ ++   GRPE  I +Y+ VPP+CIRP+V  D    + EDDLT+KLTEIV  N  +   
Sbjct: 213 LLALKPQFGRPEEYIWQYICVPPVCIRPSVAQD--GATNEDDLTVKLTEIVFTNNIIKSG 270

Query: 406 INLGGPAVL---LMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           +  G        L++  ++LQ+  A ++NS+   +PP+ S  KP+RG  QRL
Sbjct: 271 LTKGSKGTTTAQLVEQWDFLQLSVALYINSEMPGVPPM-SGHKPIRGFCQRL 321

[84][TOP]
>UniRef100_Q756K2 DNA-directed RNA polymerase n=1 Tax=Eremothecium gossypii
           RepID=Q756K2_ASHGO
          Length = 1459

 Score =  111 bits (278), Expect = 3e-23
 Identities = 63/152 (41%), Positives = 91/152 (59%), Gaps = 8/152 (5%)
 Frame = +1

Query: 121 RNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVAL--IDMRAVGGRPERLILRYLPVPP 294
           +++ +LER++ R  ++LNPL+TL LF+ ++ +D  L  ID     GRPE  I RYLP PP
Sbjct: 206 QHSPELERYMKRTMENLNPLKTLNLFKQISPQDCELLGIDSTVKAGRPETYIWRYLPAPP 265

Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
           +CIRP+V    S  S EDDLT+KLTEIV  +  +   +  G     +M+  ++LQ+  A 
Sbjct: 266 VCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQMAVAM 325

Query: 475 FMNSDATNLPPL------ASTAKPLRGISQRL 552
           ++NSD+ N P L          KP+RG  QRL
Sbjct: 326 YINSDSVN-PALMPGGNGGGKTKPIRGFCQRL 356

[85][TOP]
>UniRef100_A1D5Y9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
           RepID=A1D5Y9_NEOFI
          Length = 1453

 Score =  111 bits (278), Expect = 3e-23
 Identities = 57/152 (37%), Positives = 93/152 (61%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +A+ +NA++E+H  +  DD+N LR L LF+ ++  D  L+ +     RPE  + +
Sbjct: 211 DRSFDEARTSNAEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPKEARPEMFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           ++P PP+CIRP+V  D  A STEDDLT KL +IV  N  L  ++  G P   +++  +++
Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNALMKGAPVQTIVECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359

[86][TOP]
>UniRef100_C4Y380 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC
           42720 RepID=C4Y380_CLAL4
          Length = 1491

 Score =  111 bits (277), Expect = 4e-23
 Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 10/159 (6%)
 Frame = +1

Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAV-GGRPERLILRYL 282
           + +    N +LE+   RV +DLNPL+ L LF  +T +D  L  + A  GGRPE  I RYL
Sbjct: 234 FDEVFHRNPELEKFAKRVHEDLNPLKVLNLFRQITPQDCELFGIDAARGGRPEMYIWRYL 293

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
           P PP+CIRP+V  D    S EDDLT+KLTEIV  +  +   I  G     +M+  ++LQ+
Sbjct: 294 PAPPVCIRPSVMMDNQ--SNEDDLTVKLTEIVWTSSLIKAGIEKGISINNMMEQWDYLQL 351

Query: 463 EAARFMNSDATNLPPL---------ASTAKPLRGISQRL 552
             A ++NSD+ N P L         + ++KP+RG  QRL
Sbjct: 352 SVAMYINSDSAN-PALLPGGMGGSGSKSSKPIRGFCQRL 389

[87][TOP]
>UniRef100_Q6CB20 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
           RepID=Q6CB20_YARLI
          Length = 1483

 Score =  110 bits (275), Expect = 7e-23
 Identities = 63/152 (41%), Positives = 89/152 (58%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           ++++  AK +  D+ER   +  DDLNPL+   LF  +   D  L+ M    GRPE  I R
Sbjct: 200 DNSFNTAKESIPDVERLQKKAMDDLNPLKVFNLFREILPMDCELLGMDPGKGRPETYIWR 259

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+CIRP+V  D  + S EDDLT+KLTEIV  +  +   +  G     LM+  E L
Sbjct: 260 YMPAPPVCIRPSVMQD--SASNEDDLTVKLTEIVWTSAIIEAGLKQGMAVASLMEQWELL 317

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q+  A ++NSD T   P  S +KP+R ++QRL
Sbjct: 318 QLAVAVYINSD-TPQGPGQSASKPIRALTQRL 348

[88][TOP]
>UniRef100_Q2U3T5 DNA-directed RNA polymerase n=1 Tax=Aspergillus oryzae
           RepID=Q2U3T5_ASPOR
          Length = 1447

 Score =  110 bits (275), Expect = 7e-23
 Identities = 58/152 (38%), Positives = 92/152 (60%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +A+ +N ++E+H  +  DD+N LR L LF+ ++  D  L+ +     RPE  + +
Sbjct: 211 DRSFEEARSHNPEVEKHHKKAQDDMNALRVLNLFKRISDTDCELLGLDPKEARPEMFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+CIRP+V  D  A STEDDLT KL +IV  N  L  ++  G P   +M+  +++
Sbjct: 271 YIPAPPVCIRPSVGQD--ASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359

[89][TOP]
>UniRef100_B8NTG3 DNA-directed RNA polymerase n=1 Tax=Aspergillus flavus NRRL3357
           RepID=B8NTG3_ASPFN
          Length = 1436

 Score =  110 bits (275), Expect = 7e-23
 Identities = 58/152 (38%), Positives = 92/152 (60%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +A+ +N ++E+H  +  DD+N LR L LF+ ++  D  L+ +     RPE  + +
Sbjct: 211 DRSFEEARSHNPEVEKHHKKAQDDMNALRVLNLFKRISDTDCELLGLDPKEARPEMFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP+CIRP+V  D  A STEDDLT KL +IV  N  L  ++  G P   +M+  +++
Sbjct: 271 YIPAPPVCIRPSVGQD--ASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359

[90][TOP]
>UniRef100_A8PGH2 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8PGH2_COPC7
          Length = 1403

 Score =  110 bits (275), Expect = 7e-23
 Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
 Frame = +1

Query: 49  KPTKTELREQAKS--AAMESAYGDAKRNNADLERHLSR-VGDDLNPLRTLALFEAMTAED 219
           K T  EL +  K+  AA+E+          +L  +L++ V +DLNPL+ L LF  ++ ED
Sbjct: 179 KKTADELEKWKKTFVAAVEA--------QKELGMYLNKAVVEDLNPLKVLDLFRRISDED 230

Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399
             L+ +R   GRPE+ I +YL VPP+CIRP+V  D    S EDD+T+KLTEIV  N  + 
Sbjct: 231 CELLGLRPEWGRPEQFIWQYLSVPPVCIRPSVAQD--GASNEDDITVKLTEIVFTNALIK 288

Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + ++ G P    M+  E+LQ+  A ++NS+   +P      KP+RG  QRL
Sbjct: 289 QGLSKGAPTPQFMEQWEFLQLSVAMYINSELPGVPSQMG-QKPIRGFVQRL 338

[91][TOP]
>UniRef100_A7SJ34 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
           RepID=A7SJ34_NEMVE
          Length = 1398

 Score =  109 bits (273), Expect = 1e-22
 Identities = 56/152 (36%), Positives = 92/152 (60%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +S++  A  NN +L   L +  + LNPLR L +F+ +  +D  L+        P  LI+R
Sbjct: 194 QSSFDVALENNKELSPLLPKAQEVLNPLRVLDIFQQIPEQDYPLLMFSPGMSHPHDLIMR 253

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            +  PP+CIRP+V S+ ++GS EDD+TMKLTEIV +N+ + K  ++G    ++M+  ++L
Sbjct: 254 RILAPPVCIRPSVISELASGSNEDDVTMKLTEIVFLNDVIRKHRSVGAKVQMIMEDWDFL 313

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NS+ + +P      K  RG  QRL
Sbjct: 314 QLQCALYINSEMSGIPLNMQPKKGTRGFVQRL 345

[92][TOP]
>UniRef100_B0XZZ0 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
           RepID=B0XZZ0_ASPFC
          Length = 1453

 Score =  109 bits (273), Expect = 1e-22
 Identities = 56/152 (36%), Positives = 92/152 (60%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +A+ +N ++E+H  +  DD+N LR L LF+ ++  D  L+ +     RPE  + +
Sbjct: 211 DRSFDEARTSNPEVEKHYKKAQDDMNALRVLNLFKKVSDTDCELLGLNPKEARPEMFLWQ 270

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           ++P PP+CIRP+V  D  A STEDDLT KL +IV  N  L  ++  G P   +++  +++
Sbjct: 271 FIPAPPVCIRPSVGQD--AASTEDDLTAKLGDIVQSNINLKNALMKGAPVQTIVECWDYM 328

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 329 QLQIAVYINSDVPGLNK-ADLGKPIRGFVQRL 359

[93][TOP]
>UniRef100_UPI0000E22532 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
           155kDa n=1 Tax=Pan troglodytes RepID=UPI0000E22532
          Length = 1349

 Score =  109 bits (272), Expect = 2e-22
 Identities = 61/150 (40%), Positives = 89/150 (59%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           ++  A  +N ++E  L R     NPL  L L   + AEDV L+ M    G+P  LIL  L
Sbjct: 155 SFETAIEHNKEVEPLLGRAQVYWNPLVVLNLLNEIPAEDVPLLLMNPEAGKPSDLILTRL 214

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
            VPPLCIRP+V SD  +G+ EDDLTMKLTEI+ +N+ + K    G    ++M+  ++LQ+
Sbjct: 215 LVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQL 274

Query: 463 EAARFMNSDATNLPPLASTAKPLRGISQRL 552
           + A ++NS+ + +P   +  K  RG  QRL
Sbjct: 275 QCALYINSELSGIPLNMAPKKWTRGFVQRL 304

[94][TOP]
>UniRef100_C1GX38 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
           Pb01 RepID=C1GX38_PARBA
          Length = 1425

 Score =  109 bits (272), Expect = 2e-22
 Identities = 56/139 (40%), Positives = 84/139 (60%)
 Frame = +1

Query: 136 LERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTV 315
           +E+H  +  DDL+PLR L LF  ++ ED  L+ +     RPE  + +Y+P PP+CIRP+V
Sbjct: 192 IEKHFKKAHDDLHPLRVLKLFRRISNEDCELLGLNPAEARPEVFLWQYIPAPPVCIRPSV 251

Query: 316 CSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDAT 495
             +  A STEDDLT KL +I+  N  L  ++N G P   +++  + +Q++ A ++NSD  
Sbjct: 252 GQE--AASTEDDLTAKLGDIIQSNMNLKNALNKGAPVQTIIECWDHMQLQLAVYINSDVP 309

Query: 496 NLPPLASTAKPLRGISQRL 552
            L   A   KP+RG  QRL
Sbjct: 310 GLQK-ADFGKPIRGFCQRL 327

[95][TOP]
>UniRef100_C8VPJ2 Putative uncharacterized protein n=2 Tax=Emericella nidulans
           RepID=C8VPJ2_EMENI
          Length = 1445

 Score =  108 bits (271), Expect = 2e-22
 Identities = 58/147 (39%), Positives = 89/147 (60%)
 Frame = +1

Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291
           +A+ +N ++E+H  +  DDLN LR L LF+ ++  D  L+ +     RPE  + +++P P
Sbjct: 216 EARSSNPEVEKHHKKAQDDLNALRVLNLFKRISDSDCELLGLDPKEARPEMFLWQFIPAP 275

Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471
           P+CIRP+V  D  A STEDDLT KL +IV  N  L  ++  G P   +M+  +++Q++ A
Sbjct: 276 PVCIRPSVGQD--ASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYMQLQIA 333

Query: 472 RFMNSDATNLPPLASTAKPLRGISQRL 552
            ++NSD   L   A   KP+RG  QRL
Sbjct: 334 VYINSDVPGLNK-ADLGKPIRGFVQRL 359

[96][TOP]
>UniRef100_B2ADZ3 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
           RepID=B2ADZ3_PODAN
          Length = 1521

 Score =  108 bits (271), Expect = 2e-22
 Identities = 62/170 (36%), Positives = 93/170 (54%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           Y K T  +          ++++  AK + A+L +H  R  DD++PL+ L LF+ + + D 
Sbjct: 195 YNKSTAQKKVAPESKIEFDASFESAKAHFAELGKHTRRAMDDMHPLKVLNLFKEINSVDC 254

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
            L+ +    GRPE  + RYLP PPLCIRP+V  +  + S EDD+T KL EIV  +  L +
Sbjct: 255 ELLGLDPAEGRPEMFLWRYLPAPPLCIRPSVAQE--SASNEDDITTKLAEIVIYSAHLRE 312

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           ++  G P   LM+  E+LQ++   ++NSD   L       K  RG  QRL
Sbjct: 313 AMLKGAPLPSLMEQWEFLQLQVGMYVNSDVPGLVQ-QGFGKVTRGFCQRL 361

[97][TOP]
>UniRef100_Q2GTS6 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
           RepID=Q2GTS6_CHAGB
          Length = 1290

 Score =  108 bits (270), Expect = 3e-22
 Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
 Frame = +1

Query: 52  PTKTELREQAKSAAME--SAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVA 225
           P    L++ A  + +E  +++  AK+   +LE+H  +  +DLNPL+ L LF A++  D  
Sbjct: 62  PLDPRLKKIAPESKVEFDASFNQAKKYTPELEKHTRKAMEDLNPLKVLNLFRAISQTDCE 121

Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405
           L+ +    GRP+  + +YLP PP+CIRP+V  + +  S EDD+T KL+EI+     L +S
Sbjct: 122 LLGLDPSEGRPDMFLWQYLPAPPICIRPSVAQENA--SNEDDITSKLSEIILYAGHLRES 179

Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           +  G    ++M+  E+LQ++   ++NSD   L       KP+RG  QRL
Sbjct: 180 LKKGVALPVIMEQWEFLQLQVGMYVNSDVPGLYQ-PGFGKPIRGFCQRL 227

[98][TOP]
>UniRef100_Q4P157 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
           RepID=Q4P157_USTMA
          Length = 1400

 Score =  107 bits (266), Expect = 8e-22
 Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPL 297
           K  N D+  HL++  +DLNPL+ L LF+ ++ ED  L+ +R   GRPE  I +Y+ VPP+
Sbjct: 199 KMGNGDISPHLNKAQEDLNPLKALDLFKRISDEDCELLGLRPEFGRPEEYIWQYICVPPV 258

Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVL---LMDGXEWLQVEA 468
           CIRP+V  D    + EDD+T+KLTEI+  N  L   +  GG       L+   E+LQ+  
Sbjct: 259 CIRPSVAQD--GATNEDDVTIKLTEIIFTNSLLKLGLVKGGKGTTTSQLVQQWEFLQLTV 316

Query: 469 ARFMNSDATNLPPLASTAKPLRGISQRL 552
           A ++NS+   +P      KP RG  QRL
Sbjct: 317 ALYINSELPGVPTQPG-QKPSRGFCQRL 343

[99][TOP]
>UniRef100_B4L5G1 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
           RepID=B4L5G1_DROMO
          Length = 1382

 Score =  106 bits (264), Expect = 1e-21
 Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 2/184 (1%)
 Frame = +1

Query: 7   GGGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSR--VGDDLNPL 180
           GG +     + +   P K   ++   ++ ME      + N  DL   LS     ++L PL
Sbjct: 162 GGVKKGPGLLKILHDPYKGRKKDATFTSHMEEMLRSTELNR-DLNLTLSNYSAAEELTPL 220

Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
             L LFE +   D+AL+ M + G  P+ LI+  + VPP CIRP+V S+  AG+TEDDLTM
Sbjct: 221 MVLDLFEQIPQSDIALLGMCSRGAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTM 280

Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGI 540
           K +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + +S+ + +P   +  K  RGI
Sbjct: 281 KQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGI 340

Query: 541 SQRL 552
            QRL
Sbjct: 341 VQRL 344

[100][TOP]
>UniRef100_B4MT76 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
           RepID=B4MT76_DROWI
          Length = 1381

 Score =  105 bits (263), Expect = 2e-21
 Identities = 58/144 (40%), Positives = 88/144 (61%), Gaps = 2/144 (1%)
 Frame = +1

Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
           N DL   LS     ++L PL  L LFE +  +DV L+ M + G  P+ LI+  + VPP C
Sbjct: 201 NRDLNLTLSNYSTAEELTPLMVLDLFEQIPQKDVPLLGMCSRGAHPKHLIVTRVFVPPAC 260

Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
           IRP+V SD  AG+TEDDLTMK +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + 
Sbjct: 261 IRPSVLSDVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320

Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
           +S+ + +P   +  K +RGI QRL
Sbjct: 321 HSEISGIPLNMAPKKTMRGIVQRL 344

[101][TOP]
>UniRef100_B4JN80 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
           RepID=B4JN80_DROGR
          Length = 1303

 Score =  105 bits (263), Expect = 2e-21
 Identities = 58/144 (40%), Positives = 88/144 (61%), Gaps = 2/144 (1%)
 Frame = +1

Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
           N DL + LS     ++L PL  L LFE +   DVAL+ M + G  P+ LI+  + VPP C
Sbjct: 201 NRDLNQTLSNYSAAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPAC 260

Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
           IRP+V S+  AG+TEDDLTMK +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + 
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320

Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
           +S+ + +P   +  K  RGI QRL
Sbjct: 321 HSEISGIPLNMAPKKTTRGIVQRL 344

[102][TOP]
>UniRef100_C5KZ53 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
           RepID=C5KZ53_9ALVE
          Length = 1719

 Score =  105 bits (262), Expect = 2e-21
 Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
 Frame = +1

Query: 70  REQAKSAAMESAYGDAKRNNADLERHLSRVG-DDLNPLRTLALFEAMTAEDVALIDMRAV 246
           ++QAK    +  Y DA  NN ++  HLS+V  +DL PL  L L   M   D  ++ +   
Sbjct: 159 KDQAK-VEYQQQYSDAVNNNPEIGNHLSKVAYEDLTPLHLLPLLAKMPPSDQEMLKLPP- 216

Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426
             +PERL++ ++PV P+CIRP+V     AG+ EDDL+++ ++IV  N  +  +++ GG  
Sbjct: 217 --QPERLVVTHVPVSPVCIRPSV-QIGDAGTQEDDLSVQTSDIVATNNNIKATLSRGGTL 273

Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
             + +  +WL  + A  MNS+AT L   A T KP+R I  RL
Sbjct: 274 KQVAEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRL 315

[103][TOP]
>UniRef100_B4MAW8 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
           RepID=B4MAW8_DROVI
          Length = 1044

 Score =  105 bits (262), Expect = 2e-21
 Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 2/184 (1%)
 Frame = +1

Query: 7   GGGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSR--VGDDLNPL 180
           GG +     + +   P K   ++   ++ M+      + N  DL   LS     ++L PL
Sbjct: 162 GGVKKGPGLLKILHDPYKGRKKDAVFTSHMDQMLRSTELNR-DLNLTLSNYSAAEELTPL 220

Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
             L LFE +   DVAL+ M + G  P+ LI+  + VPP CIRP+V S+  AG+TEDDLTM
Sbjct: 221 MVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTM 280

Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGI 540
           K +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + +S+ + +P   +  K  RGI
Sbjct: 281 KQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGI 340

Query: 541 SQRL 552
            QRL
Sbjct: 341 VQRL 344

[104][TOP]
>UniRef100_Q29CI9 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
           pseudoobscura RepID=Q29CI9_DROPS
          Length = 644

 Score =  105 bits (261), Expect = 3e-21
 Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%)
 Frame = +1

Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
           N DL   LS     ++L PL  L LFE +   DVAL+ M + G  P+ LI+  + VPP C
Sbjct: 201 NRDLNLTLSNYSTAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPAC 260

Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
           IRP+V S+  AG+TEDDLTMK +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + 
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIYEDWDFLQLHVALYF 320

Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
           +S+ + +P   +  K  RGI QRL
Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344

[105][TOP]
>UniRef100_C5KF34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Perkinsus marinus
           ATCC 50983 RepID=C5KF34_9ALVE
          Length = 465

 Score =  105 bits (261), Expect = 3e-21
 Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
 Frame = +1

Query: 70  REQAKSAAMESAYGDAKRNNADLERHLSRVG-DDLNPLRTLALFEAMTAEDVALIDMRAV 246
           ++QAK    +  Y DA  NN ++  HLS+V  +DL PL  L L   M   D  ++ +   
Sbjct: 68  KDQAK-VEYQQQYSDAVSNNPEIGNHLSKVAYEDLTPLHLLPLLAKMPPSDQEMLKLPP- 125

Query: 247 GGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPA 426
             +PERL++ ++PV P+CIRP+V     AG+ EDDL+++ ++IV  N  +  +++ GG  
Sbjct: 126 --QPERLVVTHVPVSPVCIRPSV-QIGDAGTQEDDLSVQTSDIVATNNNIKATLSRGGTL 182

Query: 427 VLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
             + +  +WL  + A  MNS+AT L   A T KP+R I  RL
Sbjct: 183 KQVAEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRL 224

[106][TOP]
>UniRef100_B4HCC5 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
           RepID=B4HCC5_DROPE
          Length = 968

 Score =  105 bits (261), Expect = 3e-21
 Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%)
 Frame = +1

Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
           N DL   LS     ++L PL  L LFE +   DVAL+ M + G  P+ LI+  + VPP C
Sbjct: 201 NRDLNLTLSNYSTAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPAC 260

Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
           IRP+V S+  AG+TEDDLTMK +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + 
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIYEDWDFLQLHVALYF 320

Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
           +S+ + +P   +  K  RGI QRL
Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344

[107][TOP]
>UniRef100_B0DK21 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
           RepID=B0DK21_LACBS
          Length = 1397

 Score =  105 bits (261), Expect = 3e-21
 Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 1/169 (0%)
 Frame = +1

Query: 49  KPTKTELREQAKSAAMESAYGDAKRNNADLERHLSR-VGDDLNPLRTLALFEAMTAEDVA 225
           K T  EL    K+      +  A     +L  ++++ V +DLN L+ L LF  ++ ED  
Sbjct: 179 KKTADELERWKKT------FAPALEAQKELAMYINKAVHEDLNALKVLDLFRRISDEDCE 232

Query: 226 LIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKS 405
           L+ +    GRPE+ I +YL VPP+CIRP+V  D    S EDDLT+KLTEIV  N  + + 
Sbjct: 233 LLGLHPDWGRPEQFIWQYLSVPPVCIRPSVAQD--GASNEDDLTVKLTEIVFTNALIRQG 290

Query: 406 INLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           +  G P    M+  E+LQ+  A ++NS+   +P      KP+RG  QRL
Sbjct: 291 LAKGSPTPQFMEQWEFLQLSVAMYINSELPGVPSQPG-QKPIRGFVQRL 338

[108][TOP]
>UniRef100_B3MLS5 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
           RepID=B3MLS5_DROAN
          Length = 1301

 Score =  104 bits (260), Expect = 4e-21
 Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%)
 Frame = +1

Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
           N DL   LS     ++L PL  L LFE +   DVAL+ M + G  P+ LI+  + VPP C
Sbjct: 201 NRDLNATLSSYSTAEELTPLMVLDLFEQIPQSDVALLGMCSRGAHPKNLIVTRVFVPPAC 260

Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
           IRP+V S+  AG+TEDDLTMK +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + 
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320

Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
           +S+ + +P   +  K  RGI QRL
Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344

[109][TOP]
>UniRef100_Q16SE0 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
           RepID=Q16SE0_AEDAE
          Length = 1298

 Score =  102 bits (255), Expect = 1e-20
 Identities = 52/129 (40%), Positives = 81/129 (62%)
 Frame = +1

Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
           +LNP+  L LF+ +   D+ L+ M +    P  LI+  + VPP+CIRP+V S+  AG+TE
Sbjct: 219 ELNPVEVLDLFKNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTE 278

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
           DDLTMK +EI+ +++ +AK +  GG   L+ +  ++LQ+  A + NS+ + +P      K
Sbjct: 279 DDLTMKQSEILLISDVIAKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKK 338

Query: 526 PLRGISQRL 552
           P RGI QRL
Sbjct: 339 PTRGIVQRL 347

[110][TOP]
>UniRef100_Q16PD2 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
           RepID=Q16PD2_AEDAE
          Length = 1298

 Score =  102 bits (255), Expect = 1e-20
 Identities = 52/129 (40%), Positives = 81/129 (62%)
 Frame = +1

Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
           +LNP+  L LF+ +   D+ L+ M +    P  LI+  + VPP+CIRP+V S+  AG+TE
Sbjct: 219 ELNPVEVLDLFKNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTE 278

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
           DDLTMK +EI+ +++ +AK +  GG   L+ +  ++LQ+  A + NS+ + +P      K
Sbjct: 279 DDLTMKQSEILLISDVIAKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKK 338

Query: 526 PLRGISQRL 552
           P RGI QRL
Sbjct: 339 PTRGIVQRL 347

[111][TOP]
>UniRef100_B0WFY1 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
           RepID=B0WFY1_CULQU
          Length = 1303

 Score =  102 bits (254), Expect = 2e-20
 Identities = 52/129 (40%), Positives = 80/129 (62%)
 Frame = +1

Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
           +LNPL  L LF+ +   D+ L+ M +    P  LI+  + VPP+CIRP+V S+  AG+TE
Sbjct: 219 ELNPLEVLDLFKNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTE 278

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
           DDLTMK +EI+ +++ + K +  GG   L+ +  ++LQ+  A + NS+ + +P      K
Sbjct: 279 DDLTMKQSEILLISDVITKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKK 338

Query: 526 PLRGISQRL 552
           P RGI QRL
Sbjct: 339 PTRGIVQRL 347

[112][TOP]
>UniRef100_UPI000186E437 DNA-directed RNA polymerase III largest subunit, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186E437
          Length = 1364

 Score =  102 bits (253), Expect = 2e-20
 Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHL-SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRY 279
           AY +    + +LE  + S V   L PL  L L E +  +DV L+ M      P  L+L  
Sbjct: 196 AYNNVLEYDRELESVIASGVAFILTPLDVLNLLERIPEDDVCLLCMNPAMVHPRDLMLTR 255

Query: 280 LPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQ 459
           LPVPPLC+RP+V S+  +G+ EDDLTMKL+EI+ +N+ + K    G    ++ +  ++LQ
Sbjct: 256 LPVPPLCVRPSVISELKSGTNEDDLTMKLSEIIFINDVIQKHRQSGAKVHMINEDWDFLQ 315

Query: 460 VEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           +  A ++NS+ T +P      K  RG+ QRL
Sbjct: 316 LHCALYINSETTGIPLSMQPKKATRGLVQRL 346

[113][TOP]
>UniRef100_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
           CCMP1335 RepID=B8C4M1_THAPS
          Length = 1422

 Score =  102 bits (253), Expect = 2e-20
 Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
 Frame = +1

Query: 52  PTKTELREQAKSAAMESAYGD-------AKRNNADLERHLSRVGDDLNPLRTLALFEAMT 210
           PT   + E+ K   ME    D       A   N ++   L    +DL P R L LF+ MT
Sbjct: 195 PTLKIIHERYKGRHMEDEVEDLLQSLQGAMITNLEINHALRVAVEDLLPTRVLELFKGMT 254

Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390
            +D  ++ +    GRPE LIL ++ VPP+ IRP+V  D   GS EDDLT+KL E++++N 
Sbjct: 255 DDDCEVLWVAPWIGRPENLILEHILVPPVPIRPSVAMDVGGGSNEDDLTVKLLEVINVNV 314

Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           AL  ++        +M+G + LQ + A+++N D   L       KP+RG+ QRL
Sbjct: 315 ALELNMTRNPQTKTIMEGWDVLQSQVAQYINGDMPGLKK-EMGHKPIRGLCQRL 367

[114][TOP]
>UniRef100_A9UN86 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
           melanogaster RepID=A9UN86_DROME
          Length = 1410

 Score =  101 bits (251), Expect = 4e-20
 Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
 Frame = +1

Query: 121 RNNADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
           + N DL   L      ++L PL  L LFE +   DVAL+ M +    P+ LI+  + VPP
Sbjct: 226 QTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPP 285

Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
            CIRP+V S+  AG+TEDDLTMK +EI+ +N+ + + +  GG   L+ +  ++LQ+  A 
Sbjct: 286 ACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVAL 345

Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
           + +S+ + +P   +  K  RGI QRL
Sbjct: 346 YFHSEISGIPINMAPKKTTRGIVQRL 371

[115][TOP]
>UniRef100_A8PJK8 DNA-directed RNA polymerase n=1 Tax=Brugia malayi
           RepID=A8PJK8_BRUMA
          Length = 1404

 Score =  101 bits (251), Expect = 4e-20
 Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
 Frame = +1

Query: 100 SAYGDAKRNNADLERHLSRVGDDL-NPLRTLALFEAMTAEDVALIDMRAVGG--RPERLI 270
           S Y  A + N +L+  L +    L +PL+   LF  +  ED+ L+ +R+      P  +I
Sbjct: 189 SEYVYAAQENKELQNLLPKTKFTLLDPLQVQILFNKIEKEDIPLLMVRSADTPKHPSDVI 248

Query: 271 LRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXE 450
           L  +PVPP CIRP+V S+  +G+TEDD+TMKL+EI+ +N+ + K    G P   + +  +
Sbjct: 249 LTRIPVPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLINDVIEKHKKEGSPTKTISETWD 308

Query: 451 WLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            LQV+ A ++NS+ + LPP     +  RG +QRL
Sbjct: 309 HLQVQCALYINSELSGLPPDMQPKRTTRGFTQRL 342

[116][TOP]
>UniRef100_A8JUY3 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
           RepID=A8JUY3_DROME
          Length = 1376

 Score =  101 bits (251), Expect = 4e-20
 Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
 Frame = +1

Query: 121 RNNADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPP 294
           + N DL   L      ++L PL  L LFE +   DVAL+ M +    P+ LI+  + VPP
Sbjct: 199 QTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPP 258

Query: 295 LCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAAR 474
            CIRP+V S+  AG+TEDDLTMK +EI+ +N+ + + +  GG   L+ +  ++LQ+  A 
Sbjct: 259 ACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVAL 318

Query: 475 FMNSDATNLPPLASTAKPLRGISQRL 552
           + +S+ + +P   +  K  RGI QRL
Sbjct: 319 YFHSEISGIPINMAPKKTTRGIVQRL 344

[117][TOP]
>UniRef100_B4PX62 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
           RepID=B4PX62_DROYA
          Length = 1383

 Score =  100 bits (250), Expect = 6e-20
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 2/144 (1%)
 Frame = +1

Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
           N DL   L      ++L PL  L LFE +   DVAL+ M +    P+ LI+  + VPP C
Sbjct: 201 NRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPAC 260

Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
           IRP+V S+  AG+TEDDLTMK +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + 
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320

Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
           +S+ + +P   +  K  RGI QRL
Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344

[118][TOP]
>UniRef100_B3NXK5 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
           RepID=B3NXK5_DROER
          Length = 1383

 Score =  100 bits (250), Expect = 6e-20
 Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 2/144 (1%)
 Frame = +1

Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
           N DL   L      ++L PL  L LFE +   DVAL+ M +    P+ LI+  + VPP C
Sbjct: 201 NRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPAC 260

Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
           IRP+V S+  AG+TEDDLTMK +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + 
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYF 320

Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
           +S+ + +P   +  K  RGI QRL
Sbjct: 321 HSEISGIPINMAPKKTTRGIVQRL 344

[119][TOP]
>UniRef100_Q7RXJ6 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
           RepID=Q7RXJ6_NEUCR
          Length = 1474

 Score =  100 bits (248), Expect = 9e-20
 Identities = 53/141 (37%), Positives = 82/141 (58%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           + K T  +       AA +S++  AK    DLE+H  +  DD++PL+ L LF+ +TAED 
Sbjct: 188 FNKSTAQKKVPPVAKAAFDSSFIQAKTFTPDLEKHSKKAMDDMDPLKVLKLFKKITAEDC 247

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
            L+ +    GRPE  + +YLP PP+CIRP+V     A S EDD+T KL+EI+     L +
Sbjct: 248 ELLGLNPSEGRPEMFLWQYLPAPPICIRPSV--QQEAASNEDDITSKLSEIILYAGHLRE 305

Query: 403 SINLGGPAVLLMDGXEWLQVE 465
           S+  G     +M+  E++Q++
Sbjct: 306 SLLKGAALNTIMEQWEFIQLQ 326

[120][TOP]
>UniRef100_Q7PMU6 DNA-directed RNA polymerase n=1 Tax=Anopheles gambiae
           RepID=Q7PMU6_ANOGA
          Length = 1379

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 51/134 (38%), Positives = 79/134 (58%)
 Frame = +1

Query: 151 SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPS 330
           S +  +LN +  L LF  +   DV L+ M +    P  LI+  + VPP+CIRP+V S+  
Sbjct: 215 SSLSKELNAVEVLDLFRNIPKSDVPLLGMTSTYSNPADLIVTRVFVPPVCIRPSVVSEVK 274

Query: 331 AGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL 510
           AG+TEDDLTMK +EI+ +++ + K +   G   L+ +  ++LQ+  A + NS+ + +P  
Sbjct: 275 AGTTEDDLTMKQSEILLISDVITKHMMTNGKIELIQEDWDYLQLHCALYFNSELSGIPLS 334

Query: 511 ASTAKPLRGISQRL 552
               KP RGI QRL
Sbjct: 335 LMPKKPTRGIVQRL 348

[121][TOP]
>UniRef100_B8MLB5 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC
           10500 RepID=B8MLB5_TALSN
          Length = 1441

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 54/170 (31%), Positives = 87/170 (51%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           Y + T  +          +++  +A+ +N D++R   +  DDL+ LR + LF+ +T  D 
Sbjct: 192 YNQSTAMKKVAPISKIVFDNSLTEARASNPDVDRFYKKAQDDLHALRVMNLFKKITNADC 251

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
            L+ +     RPE  + +Y+P PP CIRP+V  D    S EDDLT KL +IV  N  L  
Sbjct: 252 ELLGLDPTEVRPETFLWQYIPAPPNCIRPSVSQD--GASNEDDLTAKLGDIVQSNITLRN 309

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           ++  G P   LM+  +++ ++ A ++N D   L       KP R +  RL
Sbjct: 310 NLRKGAPVPTLMECWDYMTLQIAIYINGDVPGLK--GEAGKPTRSLVSRL 357

[122][TOP]
>UniRef100_B6QI35 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC
           18224 RepID=B6QI35_PENMQ
          Length = 1439

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 52/152 (34%), Positives = 83/152 (54%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +++  +A+ +N D++R   +  DDL+ LR + LF+ +T  D  L+ +     RPE  + +
Sbjct: 209 DNSLAEARASNPDVDRFYKKAQDDLHALRVMNLFKKITNADCELLGLDPTEVRPETFLWQ 268

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
           Y+P PP CIRP+V  D    S EDDLT KL +IV  N  L  ++  G P   LM+  +++
Sbjct: 269 YIPAPPNCIRPSVSQD--GASNEDDLTAKLGDIVQSNITLRNNLRKGAPVPTLMECWDYM 326

Query: 457 QVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            ++ A ++N D   L       KP R +  RL
Sbjct: 327 TLQIAIYINGDVPGLK--GEAGKPTRSLVSRL 356

[123][TOP]
>UniRef100_C4M626 DNA-directed RNA polymerase n=1 Tax=Entamoeba histolytica HM-1:IMSS
           RepID=C4M626_ENTHI
          Length = 1379

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 55/170 (32%), Positives = 88/170 (51%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           ++ PT TE+ E          + ++ + + D+   ++   +DL+P + L++F ++  ED+
Sbjct: 199 HRDPTITEMNE------FYDGFEESIKLDKDINAFINNAQEDLDPRKVLSIFRSLIREDI 252

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
             +D       PE +IL  +PVPP+ IRP+V  D    S EDDLT +L EI+  N+ + +
Sbjct: 253 ETMDFDPDNAPPENMILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKE 312

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            I  G       D  + L V  + F+NS+   LP      KPLR I QRL
Sbjct: 313 MIKRGASPYQYYDSWDQLTVAVSMFINSE---LPGCDDKGKPLRAICQRL 359

[124][TOP]
>UniRef100_UPI000022105F Hypothetical protein CBG05787 n=1 Tax=Caenorhabditis briggsae AF16
           RepID=UPI000022105F
          Length = 1402

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGR-PERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
           LNPL    LF  +   D+ ++ +R+   + P  L+L  +PVPP+CIRP+V S+  +G+TE
Sbjct: 213 LNPLFVQKLFANIKEADIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKSGTTE 272

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
           DD+TMKL EI+  N+ L K    G PA  L +  E LQ++ A ++NS+ + LPP     +
Sbjct: 273 DDVTMKLMEIMLTNDVLKKHKRDGAPAKTLFETWEHLQIQCALYINSEMSGLPPDMQPKR 332

Query: 526 PLRGISQRL 552
            +R  +QRL
Sbjct: 333 AMRAFTQRL 341

[125][TOP]
>UniRef100_Q18566 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis elegans
           RepID=Q18566_CAEEL
          Length = 1400

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGR-PERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
           LNPL    LF  +   D+ ++ +R+   + P  L+L  +PVPP+CIRP+V S+  AG+TE
Sbjct: 213 LNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTE 272

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
           DD+TMKL EI+  N+ L K    G P+  L +  E LQ++ A ++NS+ + LPP     +
Sbjct: 273 DDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPKR 332

Query: 526 PLRGISQRL 552
            +R  +QRL
Sbjct: 333 AMRAFTQRL 341

[126][TOP]
>UniRef100_UPI00015B5AFA PREDICTED: hypothetical protein n=1 Tax=Nasonia vitripennis
           RepID=UPI00015B5AFA
          Length = 1372

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 60/170 (35%), Positives = 88/170 (51%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           YK    ++   Q K A       D K   + L+  L  +   LNPL  + L E +   D+
Sbjct: 168 YKNKKPSDPIVQTKLAEYHKVVEDNKELESILQSGLISI---LNPLEVIGLLERIPERDI 224

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
            L+ M      P  LIL  +PVPP+ IRP++ SD  AG+ ED+LTMKL+EI+ +NEA+  
Sbjct: 225 PLLLMNPQCSVPRDLILTRIPVPPISIRPSIVSDLKAGTNEDNLTMKLSEILLINEAIQI 284

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
               G       +  E+LQ+  A ++NS+ + +PP     K  RG+ QRL
Sbjct: 285 HRQRGLKIQNYTEDWEFLQLHVALYINSEMSGIPPSMQPQKAGRGLVQRL 334

[127][TOP]
>UniRef100_B4H9Z6 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
           RepID=B4H9Z6_DROPE
          Length = 424

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 50/122 (40%), Positives = 77/122 (63%)
 Frame = +1

Query: 187 LALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKL 366
           L LFE +   DVAL+ M + G  P+ LI+  + VPP CIRP+V S+  AG+TEDDLTMK 
Sbjct: 3   LDLFEQIPQSDVALLGMCSRGAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQ 62

Query: 367 TEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQ 546
           +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + +S+ + +P   +  K  RGI Q
Sbjct: 63  SEILLINDVIQRHMATGGKIELIYEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQ 122

Query: 547 RL 552
           RL
Sbjct: 123 RL 124

[128][TOP]
>UniRef100_UPI0000D57400 PREDICTED: similar to AGAP004703-PA n=1 Tax=Tribolium castaneum
           RepID=UPI0000D57400
          Length = 1390

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 50/134 (37%), Positives = 79/134 (58%)
 Frame = +1

Query: 151 SRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPS 330
           S V   L P+  L LFE +   D+ L+ M +   +P+ LI   + VPP+ IRP+V SD  
Sbjct: 222 SAVSQILTPIDVLKLFERIPQSDIPLLAMDSRRSQPKDLIFTRMLVPPVSIRPSVVSDLK 281

Query: 331 AGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL 510
           AG+ EDDLTM+ +EI+ +N+ + K    G    +  +G ++LQ++ A ++NS+ + +P  
Sbjct: 282 AGTNEDDLTMRQSEIIFINDVIKKHKLSGASVNMYQEGWDFLQLQTALYINSELSGIPLA 341

Query: 511 ASTAKPLRGISQRL 552
               KP RG+ QRL
Sbjct: 342 MMPKKPGRGLVQRL 355

[129][TOP]
>UniRef100_B7G2E6 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP
           1055/1 RepID=B7G2E6_PHATR
          Length = 1281

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 53/131 (40%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           +DL P R L +F  ++ +D  ++ +  + GRPE LIL+ + VPP+ IRP+V  D   GS 
Sbjct: 176 EDLLPTRALEIFTHISDDDCEVLWIDPLIGRPETLILQSILVPPVPIRPSVAMDVGGGSN 235

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLAST 519
           EDDLT+KL EI+ +N AL  ++  G     +M+  ++LQV+ A+++N +   L  P+ S 
Sbjct: 236 EDDLTVKLQEIIDVNVALELALMKGPQTRTIMEEWDFLQVQVAQYINGEMPGLQRPIGS- 294

Query: 520 AKPLRGISQRL 552
            KP+RG+ QRL
Sbjct: 295 -KPMRGLCQRL 304

[130][TOP]
>UniRef100_B0EG66 DNA-directed RNA polymerase n=1 Tax=Entamoeba dispar SAW760
           RepID=B0EG66_ENTDI
          Length = 1379

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 54/170 (31%), Positives = 86/170 (50%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDV 222
           ++  T TE+ E          + ++ + + D+   +    +DL+P + L++F ++  ED+
Sbjct: 199 HRDATITEMNE------FYDGFEESIKLDKDINAFVDNAQEDLDPRKVLSIFRSLIREDI 252

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
             +D       PE +IL  +PVPP+ IRP+V  D    S EDDLT +L EI+  N+ + +
Sbjct: 253 ETMDFDPDNAPPENMILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKE 312

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            I  G       D  + L +  + F+NSD   LP      KPLR I QRL
Sbjct: 313 MIKRGASPYQYYDSWDQLTIAVSMFINSD---LPGCDDKGKPLRSICQRL 359

[131][TOP]
>UniRef100_UPI00019836CE PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
           RepID=UPI00019836CE
          Length = 1383

 Score = 94.0 bits (232), Expect = 7e-18
 Identities = 50/132 (37%), Positives = 78/132 (59%)
 Frame = +1

Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336
           V D LNP++ L+LF+ M  ED  L+++     RPE+L+L  + VPP+ IRP+V  D    
Sbjct: 216 VVDILNPVKVLSLFKRMMDEDCDLLNLAE---RPEKLVLTNIGVPPIAIRPSVFMDGGTQ 272

Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516
           S E+D+T +L  I+  N +L + +   G     + G ++LQ+E A+++NSD   +P    
Sbjct: 273 SNENDVTERLKRIIQANASLHQELQDTGSTSKCLAGWDYLQIEVAQYINSDVRGVPLAMQ 332

Query: 517 TAKPLRGISQRL 552
            A+PL G  QRL
Sbjct: 333 AARPLSGFVQRL 344

[132][TOP]
>UniRef100_A7NZA4 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7NZA4_VITVI
          Length = 1370

 Score = 94.0 bits (232), Expect = 7e-18
 Identities = 50/132 (37%), Positives = 78/132 (59%)
 Frame = +1

Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336
           V D LNP++ L+LF+ M  ED  L+++     RPE+L+L  + VPP+ IRP+V  D    
Sbjct: 216 VVDILNPVKVLSLFKRMMDEDCDLLNLAE---RPEKLVLTNIGVPPIAIRPSVFMDGGTQ 272

Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516
           S E+D+T +L  I+  N +L + +   G     + G ++LQ+E A+++NSD   +P    
Sbjct: 273 SNENDVTERLKRIIQANASLHQELQDTGSTSKCLAGWDYLQIEVAQYINSDVRGVPLAMQ 332

Query: 517 TAKPLRGISQRL 552
            A+PL G  QRL
Sbjct: 333 AARPLSGFVQRL 344

[133][TOP]
>UniRef100_A9RSV5 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
           patens RepID=A9RSV5_PHYPA
          Length = 1397

 Score = 93.6 bits (231), Expect = 9e-18
 Identities = 56/149 (37%), Positives = 92/149 (61%), Gaps = 2/149 (1%)
 Frame = +1

Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291
           DA +   +L+  ++RV D+L+P+R L LFE+M  +D  ++D+     RPE+LI+ +L VP
Sbjct: 209 DAMKCKPELKNCINRVYDNLDPMRVLQLFESMIEQDCEVLDLAE---RPEKLIVTHLIVP 265

Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471
           P+ IRP+V  + +AGS EDD+T++L  I++ N +L   +  G  A   M+  E LQ + +
Sbjct: 266 PVAIRPSVEMESAAGSNEDDITVRLLGILNCNNSLRTCVEQGLAAEKTMETWELLQSQVS 325

Query: 472 RFMNSDATNLP--PLASTAKPLRGISQRL 552
           + +NS+ T +P     ++ K  RG  QRL
Sbjct: 326 QLINSE-TPVPRSEQPTSGKQPRGFVQRL 353

[134][TOP]
>UniRef100_UPI00017927B1 PREDICTED: similar to AGAP004703-PA n=1 Tax=Acyrthosiphon pisum
           RepID=UPI00017927B1
          Length = 1355

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 1/171 (0%)
 Frame = +1

Query: 43  YKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRV-GDDLNPLRTLALFEAMTAED 219
           YKKP              ESA  D  + N ++E   + +  ++LNP   L L  ++  ED
Sbjct: 186 YKKP----------GTEAESALNDVVKYNKEVESMRNYLFNENLNPQEVLRLLLSIPYED 235

Query: 220 VALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALA 399
           + L+ M      P  L++  + VPP CIRP+  SD  +G+ EDDLT+KL+E++ +N+ + 
Sbjct: 236 IILLGMNPEVSNPGWLLMTRMLVPPNCIRPSAVSDIRSGTNEDDLTLKLSEVLFINDVIV 295

Query: 400 KSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
           K    G    LL +  E+LQ+  A ++NSD + +       K  RG  QRL
Sbjct: 296 KHKQSGAKPQLLHEDWEYLQLHCALYINSDLSGVSRTMMPKKIARGCVQRL 346

[135][TOP]
>UniRef100_Q8SRM3 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi
           RepID=Q8SRM3_ENCCU
          Length = 1349

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 51/130 (39%), Positives = 78/130 (60%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           +++NPL  L +F  M  +D  L+        P RLI++ + VPP CIRP+V  D   G+ 
Sbjct: 232 EEINPLVALNVFNMMKEDDYELLGFLE---SPSRLIIQNVIVPPSCIRPSVSMDDE-GTN 287

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTA 522
           EDD+T+K++EIVH N+ L + I  G P  L+ +  + LQ++ A  +NS+   LP +    
Sbjct: 288 EDDITIKISEIVHTNKVLREGIEKGNPLNLINEDWDHLQLQCALLINSE---LPQIGIPG 344

Query: 523 KPLRGISQRL 552
           +P+RGI QRL
Sbjct: 345 QPVRGIVQRL 354

[136][TOP]
>UniRef100_C4V991 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
           RepID=C4V991_NOSCE
          Length = 1335

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 48/129 (37%), Positives = 76/129 (58%)
 Frame = +1

Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
           D+NP   L +F  + +ED   + +      P + I++ + VPP CIRP+V       + E
Sbjct: 223 DINPQMALNIFSLIKSEDYEFLGLE---DSPVKFIIQNIIVPPACIRPSVGMAEKDSTNE 279

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAK 525
           DDLT+K++EI+H NE L +SI+ G    ++ D  E LQ++ A  +NSD   LP +   ++
Sbjct: 280 DDLTIKISEIIHTNEVLKESIDRGNSINIINDDWESLQLQCALMVNSD---LPQINVQSQ 336

Query: 526 PLRGISQRL 552
           P++GI QRL
Sbjct: 337 PIKGIVQRL 345

[137][TOP]
>UniRef100_B4IKC6 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
           RepID=B4IKC6_DROSE
          Length = 1369

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
 Frame = +1

Query: 127 NADLERHLSR--VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLC 300
           N DL   L      ++L PL  L LFE +   DVAL+ M +    P+ LI+  + VPP C
Sbjct: 201 NRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPAC 260

Query: 301 IRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFM 480
           IRP+V S+  AG+TEDDLTMK +EI+ +N+ + + +  GG   L+ +  ++LQ+  A + 
Sbjct: 261 IRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYS 320

Query: 481 NSDATNLPPLASTAKPLRGISQRL 552
            +               RGI QRL
Sbjct: 321 TT--------------TRGIVQRL 330

[138][TOP]
>UniRef100_A9BK83 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK83_9CRYP
          Length = 1323

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 47/111 (42%), Positives = 67/111 (60%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L+PL    +F+ ++ ED  L+D  ++   P  LIL YLPVPPL +RPTV    +  + ED
Sbjct: 200 LDPLGIFKIFQKISREDWELLDFDSIETHPTHLILYYLPVPPLGVRPTVFISETM-TNED 258

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNL 501
           DLTMKLTEI  +N  L  +   G P + + D    LQ+E  +++NS+A NL
Sbjct: 259 DLTMKLTEIQFLNIQLKINFQTGIPFLAIKDTWSILQIECGKYLNSEAFNL 309

[139][TOP]
>UniRef100_UPI0001869927 hypothetical protein BRAFLDRAFT_246077 n=1 Tax=Branchiostoma
           floridae RepID=UPI0001869927
          Length = 313

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 42/96 (43%), Positives = 63/96 (65%)
 Frame = +1

Query: 265 LILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDG 444
           +IL  L VPPLCIRP+V ++  AG+ EDD+TMKLTEI+ +N+ + K    G  A ++M+ 
Sbjct: 2   MILTRLLVPPLCIRPSVSTELKAGTNEDDVTMKLTEILFLNDVIQKHRATGARAQMIMED 61

Query: 445 XEWLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            ++LQ++ A ++NS+   +P      KP RG  QRL
Sbjct: 62  WDFLQLQCALYINSEQGGIPLNMQPKKPTRGFCQRL 97

[140][TOP]
>UniRef100_C5YBD9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
           RepID=C5YBD9_SORBI
          Length = 1391

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 50/128 (39%), Positives = 74/128 (57%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L+P   L+LF  MT ED  L+++   G RPE+LI+  + VPP+ IRP+V    S  S ED
Sbjct: 215 LDPATVLSLFRRMTDEDCELLNL---GDRPEKLIVSEIAVPPVPIRPSVVVGSSRTSNED 271

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKP 528
            +T+ L  IV+ N  L ++++ GGP     D  ++LQ++   ++NSDA  LP        
Sbjct: 272 SITVILKSIVNTNSILKETLHTGGPFTKCFDCWQYLQLQVVEYVNSDAPCLPD-----SQ 326

Query: 529 LRGISQRL 552
            RG+ QRL
Sbjct: 327 HRGLVQRL 334

[141][TOP]
>UniRef100_Q2PYS7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Batrachochytrium
           dendrobatidis RepID=Q2PYS7_BATDE
          Length = 985

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
 Frame = +1

Query: 166 DLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
           ++ P +TL L  +++ +D   + + A   RPE +I+  LPVPP+ +RP++  D  AG  E
Sbjct: 115 EMTPEKTLTLLRSISDQDATDMGLSADWARPEWMIITTLPVPPMPVRPSISMD-GAGRGE 173

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522
           DDLT KL +I+  N +L +    G PA ++ +    LQ   A +MN+D  NLP  +  + 
Sbjct: 174 DDLTHKLMDIIKANISLKRHETEGAPAHIVNEFENLLQFHVATYMNNDIANLPQAMQKSG 233

Query: 523 KPLRGISQRL 552
           +PL+ I+ RL
Sbjct: 234 RPLKSIAARL 243

[142][TOP]
>UniRef100_Q8TRB7 DNA-directed RNA polymerase n=1 Tax=Methanosarcina acetivorans
           RepID=Q8TRB7_METAC
          Length = 880

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
 Frame = +1

Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
           G+ L P      FE +  ED+ +I M     RPE +IL  LPVPP+ +RP++  + S   
Sbjct: 172 GEKLTPTEIRDRFENVPDEDIRVIGMDPKNARPEWMILTVLPVPPVTVRPSITLE-SGQR 230

Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
           +EDDLT KL +I+ +N+   ++   G P +++ D  E LQ     F ++  + +PP    
Sbjct: 231 SEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHR 290

Query: 517 TAKPLRGISQRL 552
           + +PL+ +SQRL
Sbjct: 291 SGRPLKTLSQRL 302

[143][TOP]
>UniRef100_Q8PUR1 DNA-directed RNA polymerase n=1 Tax=Methanosarcina mazei
           RepID=Q8PUR1_METMA
          Length = 880

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
 Frame = +1

Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
           G+ L P      FE +  ED+ ++ M     RPE +IL  LPVPP+ +RP++  + S   
Sbjct: 172 GEKLTPTEIRDRFENIPDEDIRVVGMDPKNARPEWMILTVLPVPPVTVRPSITLE-SGQR 230

Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
           +EDDLT KL +I+ +N+   ++   G P +++ D  E LQ     F ++  + +PP    
Sbjct: 231 SEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHR 290

Query: 517 TAKPLRGISQRL 552
           + +PL+ +SQRL
Sbjct: 291 SGRPLKTLSQRL 302

[144][TOP]
>UniRef100_Q3IUN2 DNA-directed RNA polymerase n=1 Tax=Natronomonas pharaonis DSM 2160
           RepID=Q3IUN2_NATPD
          Length = 1059

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
 Frame = +1

Query: 103 AYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYL 282
           A+G    N    +  LS  GD L P      FE +  ED+  + +     RPE +IL  L
Sbjct: 307 AFGGRFENAPAPDFLLSYSGDKLMPSNVRDRFENIPDEDIETLGIDPERSRPEWMILTVL 366

Query: 283 PVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQV 462
           PVPP+  RP++  D +   +EDDLT KL +I+ +N+   ++   G P +++ D  E LQ 
Sbjct: 367 PVPPVTARPSITLD-NGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQY 425

Query: 463 EAARFMNSDATNLPPLA-STAKPLRGISQRL 552
               FM+++ +  PP    + +PL+ +SQRL
Sbjct: 426 HVTTFMDNEISGTPPARHRSGRPLKTLSQRL 456

[145][TOP]
>UniRef100_A0B558 DNA-directed RNA polymerase n=1 Tax=Methanosaeta thermophila PT
           RepID=A0B558_METTP
          Length = 876

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
 Frame = +1

Query: 106 YGDAKRNNADLERHLSRV--GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRY 279
           Y  A +     ER LS +  G  L P      FE ++ ED+ ++ M     RPE  IL  
Sbjct: 148 YCGAPQREIKFERPLSYIEDGHKLTPSDIRDRFERISDEDIMVMGMNPETARPEWTILTV 207

Query: 280 LPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQ 459
           LPVPP+ +RP++  + S   +EDDLT KL +I+ +N+   ++   G P +++ D  E LQ
Sbjct: 208 LPVPPVTMRPSITLE-SGQRSEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQ 266

Query: 460 VEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
                F+++  + +PP    + +PL+ +SQRL
Sbjct: 267 YHVTTFLDNTVSGVPPARHRSGRPLKTLSQRL 298

[146][TOP]
>UniRef100_Q6LXI8 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis
           RepID=Q6LXI8_METMP
          Length = 889

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
 Frame = +1

Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
           + E + AED  L+ + A   RPE ++L  LPVPP+ +RP++  + S   +EDDLT KL +
Sbjct: 186 ILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244

Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
           I+ +N+ L ++IN G P +++ D  + LQ     + +++A  +PP    + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304

Query: 550 L 552
           L
Sbjct: 305 L 305

[147][TOP]
>UniRef100_Q464Y7 DNA-directed RNA polymerase n=1 Tax=Methanosarcina barkeri str.
           Fusaro RepID=Q464Y7_METBF
          Length = 880

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
 Frame = +1

Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
           G+ L P      FE +  +D+ +I M     RPE +IL  LPVPP+ +RP++  + S   
Sbjct: 172 GEKLTPTEIRDRFENIPDDDIRVIGMDPKNARPEWMILTVLPVPPVTVRPSITLE-SGQR 230

Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
           +EDDLT KL +I+ +N+   ++   G P +++ D  E LQ     F ++  + +PP    
Sbjct: 231 SEDDLTHKLVDIIRINQRFQENREAGAPQLIIEDLWELLQYHVTTFFDNSVSGIPPARHR 290

Query: 517 TAKPLRGISQRL 552
           + +PL+ +SQRL
Sbjct: 291 SGRPLKTLSQRL 302

[148][TOP]
>UniRef100_A4FWF6 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C5
           RepID=A4FWF6_METM5
          Length = 889

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
 Frame = +1

Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
           + E + AED  L+ + A   RPE ++L  LPVPP+ +RP++  + S   +EDDLT KL +
Sbjct: 186 ILEKIPAEDCRLLGINAKVARPEFMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244

Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
           I+ +N+ L ++IN G P +++ D  + LQ     + +++A  +PP    + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304

Query: 550 L 552
           L
Sbjct: 305 L 305

[149][TOP]
>UniRef100_P11512 DNA-directed RNA polymerase subunit A' n=1 Tax=Sulfolobus
           acidocaldarius RepID=RPOA1_SULAC
          Length = 880

 Score = 84.0 bits (206), Expect = 7e-15
 Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPL 297
           K  N + ER+ S V   L+P       E +   DV L+       RPE +IL  LPVPP+
Sbjct: 160 KPYNFNEERNGSIV--KLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPI 217

Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
            IRP++  + S    EDDLT KL +I+ +NE L +SI  G P +++ D  + LQ   A +
Sbjct: 218 TIRPSITIE-SGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATY 276

Query: 478 MNSDATNLPPLA-STAKPLRGISQRL 552
            +++   LPP    + +PLR ++QRL
Sbjct: 277 FDNEIPGLPPAKHRSGRPLRTLAQRL 302

[150][TOP]
>UniRef100_Q980R2 DNA-directed RNA polymerase subunit A' n=2 Tax=Sulfolobus
           solfataricus RepID=RPOA1_SULSO
          Length = 880

 Score = 83.6 bits (205), Expect = 9e-15
 Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 1/178 (0%)
 Frame = +1

Query: 22  AARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFE 201
           AAR +  Y K  KT ++ Q      E  Y        +           L P       E
Sbjct: 128 AARRLTEYVK--KTAMKAQVCPHCNEKQYKIKLEKPYNFYEERKEGVAKLTPSDIRERLE 185

Query: 202 AMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVH 381
            +   DV ++       RPE +IL  LPVPP+ IRP++  + S    EDDLT KL +IV 
Sbjct: 186 KIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAEDDLTHKLVDIVR 244

Query: 382 MNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
           +NE L +SI+ G P +++ D  + LQ   A + +++   LPP    + +PLR ++QRL
Sbjct: 245 INERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRL 302

[151][TOP]
>UniRef100_C0SHD3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
           Pb03 RepID=C0SHD3_PARBP
          Length = 1449

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
 Frame = +1

Query: 97  ESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           + ++ +AK++N ++E+H  +  DDL+PLR L LF  ++ ED  L+ +           LR
Sbjct: 211 DRSFEEAKKSNPEIEKHFKKAHDDLHPLRVLKLFRRISNEDCELLGLN----------LR 260

Query: 277 YLP--VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXE 450
            L   V       + C    A STEDDLT KL +I+  N  L  ++N G P   +++  +
Sbjct: 261 KLDRGVSVAVYSRSACE---AASTEDDLTAKLGDIIQSNMNLKNALNKGAPVQTIIECWD 317

Query: 451 WLQVEAARFMNSDATNLPPLASTAKPLRGISQRL 552
            +Q++ A ++NSD   L   A   KP+RG  QRL
Sbjct: 318 HMQLQLAVYINSDVPGLQK-ADFGKPIRGFCQRL 350

[152][TOP]
>UniRef100_Q5UZR4 DNA-directed RNA polymerase n=1 Tax=Haloarcula marismortui
           RepID=Q5UZR4_HALMA
          Length = 969

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
 Frame = +1

Query: 64  ELREQA---KSAAMESAYGDAKRNNAD---LERHLS--RVGDDLNPLRTLAL---FEAMT 210
           EL E+     S   E   G+ +    D   LE+ LS     +D+N L    +   FE + 
Sbjct: 197 ELSEETGIDSSRVQEILSGEFRPRQEDRKALEKALSVDLTEEDMNKLMPSDIRDWFEDIP 256

Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390
            ED+ ++ M+    RPE +IL  LPVPP+  RP++  D    S EDDLT KL +I+ +N+
Sbjct: 257 DEDIEVLGMKPARSRPEWMILTVLPVPPVTARPSITLDNGQRS-EDDLTHKLVDIIRINQ 315

Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
              ++   G P +++ D  E LQ     FM+++ +  PP    + +PL+ +SQRL
Sbjct: 316 RFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 370

[153][TOP]
>UniRef100_A6VGU9 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C7
           RepID=A6VGU9_METM7
          Length = 889

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 43/121 (35%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
 Frame = +1

Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
           + E +  ED  L+ + A   RPE ++L  LPVPP+ +RP++  + S   +EDDLT KL +
Sbjct: 186 ILEKIPGEDCKLLGINAKVARPEYMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244

Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
           I+ +N+ L ++IN G P +++ D  + LQ     + +++A  +PP    + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304

Query: 550 L 552
           L
Sbjct: 305 L 305

[154][TOP]
>UniRef100_P09846 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanothermobacter
           thermautotrophicus str. Winter RepID=RPOA1_METTW
          Length = 865

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 51/174 (29%), Positives = 93/174 (53%), Gaps = 13/174 (7%)
 Frame = +1

Query: 70  REQAKSAAMESAYGDAKRNNAD----------LERHLSRVGDD--LNPLRTLALFEAMTA 213
           RE++ +  ++  Y +A+R+             L++ +S V  D  L P       E +T 
Sbjct: 126 REESLTPIIKEIYAEARRDRCPHCEEEQEEIKLDKPVSIVEGDYKLTPSEVRERLERITD 185

Query: 214 EDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEA 393
            D  L+ +     RPE ++L  LPVPP+ +RP++  +    S EDDLT KL +I+ +N+ 
Sbjct: 186 NDSLLLGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-EDDLTHKLVDILRINQR 244

Query: 394 LAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
           L +++  G P +++ D  E LQ     + +++A+ +PP    + +PL+ ++QRL
Sbjct: 245 LKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 298

[155][TOP]
>UniRef100_B6AIF4 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
           RepID=B6AIF4_9CRYT
          Length = 1803

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           +DL PL    L + +  ED+ +++M     +P+RL+L  LPVPP CIRP+V     AGS 
Sbjct: 215 EDLTPLFVQTLLQKVPYEDLDILEMF----KPDRLLLSRLPVPPNCIRPSVTMG-EAGSN 269

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
           EDDLT+ L+EI  +N  +   +  G   + L+   E+LQ++  R +N++A  +  L ++ 
Sbjct: 270 EDDLTVILSEITDLNNMIKSQMKSGFQTLQLLGNWEFLQLQCTRLINAEAPGVNQLLASK 329

Query: 520 --AKPLRGISQRL 552
              K  RGI QRL
Sbjct: 330 NIPKAGRGICQRL 342

[156][TOP]
>UniRef100_A3DMP4 DNA-directed RNA polymerase n=1 Tax=Staphylothermus marinus F1
           RepID=A3DMP4_STAMF
          Length = 886

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           LNP+   A  E +  EDV L+    +  RPE ++L  LPVPP  +RP++  +    S ED
Sbjct: 180 LNPIEVRARLEKILDEDVRLLGGDPIDARPEWMVLTVLPVPPRSVRPSILLETGIRS-ED 238

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +I+ +N  L + I  G P  ++ D  E LQ     + +++A  +P     + K
Sbjct: 239 DLTHKLVDIIRINNRLREHIESGAPNAIIEDEWELLQYHVTTYFDNEAPGIPVARHRSGK 298

Query: 526 PLRGISQRL 552
            L+G++QRL
Sbjct: 299 VLKGLAQRL 307

[157][TOP]
>UniRef100_C7NYI6 DNA-directed RNA polymerase subunit A' n=1 Tax=Halomicrobium
           mukohataei DSM 12286 RepID=C7NYI6_HALMD
          Length = 972

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
 Frame = +1

Query: 196 FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEI 375
           FE +  EDV ++ M+    RPE +IL  LPVPP+  RP++  D +   +EDDLT KL +I
Sbjct: 256 FEDIPDEDVEVLGMKPARSRPEWMILTVLPVPPVTARPSITLD-NGQRSEDDLTHKLVDI 314

Query: 376 VHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
           + +N+   ++   G P +++ D  E LQ     FM+++ +  PP    + +PL+ +SQRL
Sbjct: 315 IRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 374

[158][TOP]
>UniRef100_A8TEB8 DNA-directed RNA polymerase n=1 Tax=Methanococcus voltae A3
           RepID=A8TEB8_METVO
          Length = 888

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 43/121 (35%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
 Frame = +1

Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
           + E + A D  L+ +  +  RPE +IL  LPVPP+ +RP++  + S   +EDDLT KL +
Sbjct: 186 ILEKIPANDCKLLGINHIVARPEYMILTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244

Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
           I+ +N+ L ++IN G P +++ D  + LQ     + +++A  +PP    + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304

Query: 550 L 552
           L
Sbjct: 305 L 305

[159][TOP]
>UniRef100_C4KIV8 DNA-directed RNA polymerase n=1 Tax=Sulfolobus islandicus M.16.4
           RepID=C4KIV8_SULIK
          Length = 880

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P       E +   DV ++       RPE +IL  LPVPP+ IRP++  + S    ED
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +IV +NE L +SI+ G P +++ D  + LQ   A + +++   LPP    + +
Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293

Query: 526 PLRGISQRL 552
           PLR ++QRL
Sbjct: 294 PLRTLAQRL 302

[160][TOP]
>UniRef100_C3MY99 DNA-directed RNA polymerase n=2 Tax=Sulfolobus islandicus
           RepID=C3MY99_SULIM
          Length = 880

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P       E +   DV ++       RPE +IL  LPVPP+ IRP++  + S    ED
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +IV +NE L +SI+ G P +++ D  + LQ   A + +++   LPP    + +
Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293

Query: 526 PLRGISQRL 552
           PLR ++QRL
Sbjct: 294 PLRTLAQRL 302

[161][TOP]
>UniRef100_C3MRK3 DNA-directed RNA polymerase n=3 Tax=Sulfolobus islandicus
           RepID=C3MRK3_SULIL
          Length = 880

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P       E +   DV ++       RPE +IL  LPVPP+ IRP++  + S    ED
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +IV +NE L +SI+ G P +++ D  + LQ   A + +++   LPP    + +
Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293

Query: 526 PLRGISQRL 552
           PLR ++QRL
Sbjct: 294 PLRTLAQRL 302

[162][TOP]
>UniRef100_B8YB53 DNA-directed RNA polymerase n=1 Tax=Sulfolobus shibatae B12
           RepID=B8YB53_SULSH
          Length = 880

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P       E +   DV ++       RPE +IL  LPVPP+ IRP++  + S    ED
Sbjct: 175 LTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIE-SGIRAED 233

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +IV +NE L +SI+ G P +++ D  + LQ   A + +++   LPP    + +
Sbjct: 234 DLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGR 293

Query: 526 PLRGISQRL 552
           PLR ++QRL
Sbjct: 294 PLRTLAQRL 302

[163][TOP]
>UniRef100_A9A9V0 DNA-directed RNA polymerase n=1 Tax=Methanococcus maripaludis C6
           RepID=A9A9V0_METM6
          Length = 889

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
 Frame = +1

Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
           + E +  ED  L+ + +   RPE ++L  LPVPP+ +RP++  + S   +EDDLT KL +
Sbjct: 186 ILEKIPGEDCKLLGINSKVARPEYMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244

Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
           I+ +N+ L ++IN G P +++ D  + LQ     + +++A  +PP    + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304

Query: 550 L 552
           L
Sbjct: 305 L 305

[164][TOP]
>UniRef100_B3A009 DNA-directed RNA polymerase n=1 Tax=Haloarcula japonica
           RepID=B3A009_HALJP
          Length = 969

 Score = 81.6 bits (200), Expect = 3e-14
 Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
 Frame = +1

Query: 163 DDLNPLRTLAL---FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSA 333
           +D+N L    +   FE +  +D+ ++ M+    RPE +IL  LPVPP+  RP++  D   
Sbjct: 238 EDMNKLMPSDIRDWFEDIPDQDIEVLGMKPARSRPEWMILTVLPVPPVTARPSITLDNGQ 297

Query: 334 GSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA 513
            S EDDLT KL +I+ +N+   ++   G P +++ D  E LQ     FM+++ +  PP  
Sbjct: 298 RS-EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPAR 356

Query: 514 -STAKPLRGISQRL 552
             + +PL+ +SQRL
Sbjct: 357 HRSGRPLKTLSQRL 370

[165][TOP]
>UniRef100_O27125 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=RPOA1_METTH
          Length = 870

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 48/174 (27%), Positives = 94/174 (54%), Gaps = 13/174 (7%)
 Frame = +1

Query: 70  REQAKSAAMESAYGDAKRNNAD----------LERHLSRVGDD--LNPLRTLALFEAMTA 213
           +E++ +  ++  Y +A+R+             L++ +S V  D  L P       E ++ 
Sbjct: 126 KEESLTPIIKEIYAEARRDKCPHCEEEQEEIKLDKPVSIVEGDYKLTPSEVRERLERISD 185

Query: 214 EDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEA 393
           +D  ++ +     RPE ++L  LPVPP+ +RP++  +    S EDDLT KL +I+ +N+ 
Sbjct: 186 DDALILGVNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-EDDLTHKLVDILRINQR 244

Query: 394 LAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
           L +++  G P +++ D  E LQ     + +++A+ +PP    + +PL+ ++QRL
Sbjct: 245 LKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 298

[166][TOP]
>UniRef100_Q27900 DNA-directed RNA polymerase (Fragment) n=1 Tax=Euplotes
           octocarinatus RepID=Q27900_EUPOC
          Length = 511

 Score = 80.9 bits (198), Expect = 6e-14
 Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
 Frame = +1

Query: 127 NADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIR 306
           N D+E  L+++  D+NPL    L + +  +D+ L DM      P  +I+ Y+ VPP+C+R
Sbjct: 214 NKDVEWGLNKMQQDINPLIAYNLLKNIRKDDIPLFDMNGKNINPCDMIVYYIIVPPVCLR 273

Query: 307 PTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAV-LLMDGXEWLQVEAARFMN 483
           P+V    +    EDDLT+KL+EI+ +N  + KS  +GGP    L      LQ   A+++N
Sbjct: 274 PSVAVTETK-RNEDDLTVKLSEILQLN-MIIKSFIVGGPNYSKLATTWNQLQYTLAQYIN 331

Query: 484 SDATNLPPLASTAKPLRGISQRL 552
           +D   LP      K +R   QRL
Sbjct: 332 ADTPGLPLNMVGNKAIRAFCQRL 354

[167][TOP]
>UniRef100_P41556 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanococcus
           vannielii SB RepID=RPOA1_METVS
          Length = 889

 Score = 80.9 bits (198), Expect = 6e-14
 Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
 Frame = +1

Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
           + E +  ED  L+ + +   RPE ++L  LPVPP+ +RP++  + S   +EDDLT KL +
Sbjct: 186 ILEKIPNEDCKLLGINSRVARPEYMVLTVLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244

Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
           I+ +N+ L ++IN G P +++ D  + LQ     + +++A  +PP    + +PLR ++QR
Sbjct: 245 IIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQR 304

Query: 550 L 552
           L
Sbjct: 305 L 305

[168][TOP]
>UniRef100_A2DEX5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis G3
           RepID=A2DEX5_TRIVA
          Length = 1657

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
 Frame = +1

Query: 133 DLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPT 312
           D +++L  + DD+ PLR L LF+A+    + L+        P  +I+  + +PP CIRP 
Sbjct: 181 DYKKYLDNICDDITPLRALQLFKAIPTRQIPLLLSGFSVSSPADMIITSIVIPPNCIRPA 240

Query: 313 VCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDA 492
           V +    G+ +DDLT++L + VH N+ + KSI +G  A   M+    LQ      +NS+A
Sbjct: 241 VIA-AGEGTNQDDLTVRLVDSVHFNDEIRKSIEVGRQASSTMELWSSLQQNVNSSINSEA 299

Query: 493 TNLPPLASTA-KPLRGISQRL 552
            +         KP+ G+ QRL
Sbjct: 300 ADTAAKTKKKNKPVIGVIQRL 320

[169][TOP]
>UniRef100_Q12WS6 DNA-directed RNA polymerase n=1 Tax=Methanococcoides burtonii DSM
           6242 RepID=Q12WS6_METBU
          Length = 883

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
 Frame = +1

Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
           G  L P      FE ++ +D+ ++ M     RPE +IL  LPVPP+ +RP++  + S   
Sbjct: 175 GHKLTPTEIRDRFENISDDDIRVMGMNPDTARPEWMILTVLPVPPVTVRPSITLE-SGQR 233

Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
           +EDDLT KL +I+ +N+   ++ + G P +++ D  E LQ     + +++ + +PP    
Sbjct: 234 SEDDLTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHLTTYFDNEVSGVPPARHR 293

Query: 517 TAKPLRGISQRL 552
           + +PL+ ++QRL
Sbjct: 294 SGRPLKTLTQRL 305

[170][TOP]
>UniRef100_Q9HM79 DNA-directed RNA polymerase subunit A' n=2 Tax=Halobacterium
           salinarum RepID=RPOA1_HALSA
          Length = 971

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
 Frame = +1

Query: 64  ELREQAK---SAAMESAYGDAKRNNADLERHLSRVGDDLN--------PLRTLALFEAMT 210
           EL EQ     S   E   G+ +    D E   + +G DL         P      FE + 
Sbjct: 201 ELAEQTDIDISRINEILSGEFRPRREDREAIETAIGADLTTEDMNKLMPSDIRDWFEDIP 260

Query: 211 AEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNE 390
            ED+  + + +   RPE +IL  LPVPP+  RP++  D    S EDDLT KL +I+ +N+
Sbjct: 261 GEDLEALGVNSDRSRPEWMILTVLPVPPVTARPSITLDNGQRS-EDDLTHKLVDIIRINQ 319

Query: 391 ALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
              ++   G P +++ D  E LQ     FM+++ +  PP    + +PL+ +SQRL
Sbjct: 320 RFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 374

[171][TOP]
>UniRef100_B9Z9B0 DNA-directed RNA polymerase n=1 Tax=Natrialba magadii ATCC 43099
           RepID=B9Z9B0_NATMA
          Length = 976

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
 Frame = +1

Query: 196 FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEI 375
           FE +  ED+ ++ + A   RPE +IL  LPVPP+  RP++  D    S EDDLT KL +I
Sbjct: 255 FENIPDEDIEVLGIDADRSRPEWMILTVLPVPPVTARPSITLDNGQRS-EDDLTHKLVDI 313

Query: 376 VHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
           + +N+   ++   G P +++ D  E LQ     FM+++ +  PP    + +PL+ +SQRL
Sbjct: 314 IRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRL 373

[172][TOP]
>UniRef100_P31813 DNA-directed RNA polymerase subunit A' n=1 Tax=Thermococcus celer
           RepID=RPOA1_THECE
          Length = 905

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E +   D+ LI + A   RPE ++L  LPVPP+ +RP++  + S    EDDLT KL +I+
Sbjct: 191 EKIPDRDLPLIGLDAEKARPEWMVLTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N  L  +I  G P +++ D  + LQ     ++N++ + +PP    + +PL+ +SQRL
Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLSQRL 308

[173][TOP]
>UniRef100_A5K7T9 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
           RepID=A5K7T9_PLAVI
          Length = 1946

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           DDLN L  L LF+ M    V L+++ +    PE+L++  L VPP  IRP+V  D   G+ 
Sbjct: 238 DDLNSLYVLNLFKNMNPYHVKLLNVES----PEKLLITALLVPPNTIRPSVVIDEH-GTA 292

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
           EDDLT  L+EI  +N  +    + G      +   E+LQ++  RF+NSD+  +  L +T 
Sbjct: 293 EDDLTCILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 352

Query: 520 --AKPLRGISQRL 552
             +KP RGI QRL
Sbjct: 353 NISKPGRGICQRL 365

[174][TOP]
>UniRef100_Q2PYS6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polychytrium
           aggregatum RepID=Q2PYS6_9FUNG
          Length = 1016

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
 Frame = +1

Query: 82  KSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPE 261
           +  A++ +Y    R++ D  +   +V  DL   + +++F++++ ED+  + +     RPE
Sbjct: 111 RKLALDLSYTVVLRDDNDQTKETKKV--DLTAEKVVSIFKSISEEDINNMGLSQDWARPE 168

Query: 262 RLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMD 441
            + +  L VPP+ +RP V  +   G ++DDLT K+ +IV  N  L K    G PA ++ +
Sbjct: 169 WMCITVLAVPPMPVRPAVNMNNGGGVSQDDLTYKIADIVKTNNLLRKHEAEGSPAHVINE 228

Query: 442 GXEWLQVEAARFMNSDATNLPPL-ASTAKPLRGISQRL 552
             + LQ   A +MN+D + +P     + +PL+ I  RL
Sbjct: 229 FEKLLQYHVATYMNNDISGIPKAQQKSGRPLKSIRARL 266

[175][TOP]
>UniRef100_B5IH61 DNA-directed RNA polymerase (Fragment) n=1 Tax=Aciduliprofundum
           boonei T469 RepID=B5IH61_9EURY
          Length = 661

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
 Frame = +1

Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291
           + K+   D        G  L P       E +  ED+ L+ M     RPE ++L  LPVP
Sbjct: 103 EQKKITLDKPTTFREEGRKLTPKEIRERLERIPDEDLPLLGMNPETARPEWMVLTVLPVP 162

Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471
           P+ +RPT+  +    S EDDLT KL +I+ +N+ L ++ + G P +++ D  E LQ    
Sbjct: 163 PVNVRPTITLETGERS-EDDLTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVT 221

Query: 472 RFMNSDATNLPPLA-STAKPLRGISQRL 552
            + ++  + +PP    + +PL+ + QRL
Sbjct: 222 TYFDNQTSGIPPARHRSGRPLKTLVQRL 249

[176][TOP]
>UniRef100_B5IGJ6 DNA-directed RNA polymerase n=1 Tax=Aciduliprofundum boonei T469
           RepID=B5IGJ6_9EURY
          Length = 895

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
 Frame = +1

Query: 112 DAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVP 291
           + K+   D        G  L P       E +  ED+ L+ M     RPE ++L  LPVP
Sbjct: 160 EQKKITLDKPTTFREEGRKLTPKEIRERLERIPDEDLPLLGMNPETARPEWMVLTVLPVP 219

Query: 292 PLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAA 471
           P+ +RPT+  +    S EDDLT KL +I+ +N+ L ++ + G P +++ D  E LQ    
Sbjct: 220 PVNVRPTITLETGERS-EDDLTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVT 278

Query: 472 RFMNSDATNLPPLA-STAKPLRGISQRL 552
            + ++  + +PP    + +PL+ + QRL
Sbjct: 279 TYFDNQTSGIPPARHRSGRPLKTLVQRL 306

[177][TOP]
>UniRef100_B3L8U1 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
           RepID=B3L8U1_PLAKH
          Length = 1970

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           DDLN L  L LF+ M    V L+++      PE+L++  L VPP  IRP+V  D   G+ 
Sbjct: 218 DDLNSLYVLNLFKNMNPYHVKLLNVE----NPEKLLITALLVPPNTIRPSVIIDEH-GTA 272

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
           EDDLT  L+EI  +N  +    + G      +   E+LQ++  RF+NSD+  +  L +T 
Sbjct: 273 EDDLTCILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 332

Query: 520 --AKPLRGISQRL 552
             +KP RGI QRL
Sbjct: 333 NISKPGRGICQRL 345

[178][TOP]
>UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa
           RepID=Q2PYR6_9FUNG
          Length = 1013

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           D+++  R L     +T  D   + +     RPE ++L  +PVPP+ +RP++  D    S 
Sbjct: 132 DEVSVERVLQTLRKITDRDAETLGIDPYFARPEWMVLHVMPVPPMTVRPSIQMDAMRPS- 190

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLAST 519
           EDDLT KL++I+  NE L + I  G PA ++ +    LQ   A FMN++A+ +P  L  +
Sbjct: 191 EDDLTYKLSDILKANERLQRCIVEGAPAHVINEFVTLLQFHTAAFMNNEASGMPQALQKS 250

Query: 520 AKPLRGISQRL 552
            +P++ I  RL
Sbjct: 251 GRPIKSIRARL 261

[179][TOP]
>UniRef100_B9LQV9 DNA-directed RNA polymerase n=1 Tax=Halorubrum lacusprofundi ATCC
           49239 RepID=B9LQV9_HALLT
          Length = 975

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 6/171 (3%)
 Frame = +1

Query: 58  KTELREQAKSAAMESAYGDAKRNNADLERHLS--RVGDDLNPLRTLAL---FEAMTAEDV 222
           KT++  +  +  M   +   K +   +E+ L      +D+N L    +   FE +  ED+
Sbjct: 204 KTDIDLERINEIMAGEFRPRKEDRRAIEKALDIDLTEEDMNKLMPSDIRDWFEDIPDEDL 263

Query: 223 ALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAK 402
            ++ + +   RPE +IL  LPVPP+  RP++  D    S EDDLT KL +I+ +N+   +
Sbjct: 264 EVLGIDSEHSRPEWMILTVLPVPPVTTRPSITLDNGQRS-EDDLTHKLVDIIRINQRFME 322

Query: 403 SINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
           +   G P +++ D  E LQ     F++++ +  PP    + +PL+ +SQRL
Sbjct: 323 NREAGAPQLIIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRL 373

[180][TOP]
>UniRef100_A4YCQ9 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348
           RepID=A4YCQ9_METS5
          Length = 886

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P       E +   DV L+       RPE +IL  LPVPP+ IRP++  + S    ED
Sbjct: 181 LTPSDIRERLERIPDSDVELLGYDPTTSRPEWIILTVLPVPPITIRPSIMIE-SGIRAED 239

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +IV +NE L +SI+ G P +++ D  + LQ   A + +++   LP     + +
Sbjct: 240 DLTHKLVDIVRINERLKESIDAGAPQLIVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGR 299

Query: 526 PLRGISQRL 552
           PLR ++QRL
Sbjct: 300 PLRTLAQRL 308

[181][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
           RepID=Q8MX30_NAEGR
          Length = 1590

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPL 297
           K  +A+ ++ L++   +L   R L +F+ + AED+ L+       RPE +IL  LP+PP 
Sbjct: 118 KDTSAEAKQELTK--QELTAERALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPPP 175

Query: 298 CIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
            +RP+V    SA  +EDDLT KL +I+  N A+ K+   G P   + +    LQ   A +
Sbjct: 176 QVRPSV-HHGSADRSEDDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCATY 234

Query: 478 MNSDATNLPPLAS-TAKPLRGISQRL 552
           +N++   +P   + + +PL+ I QRL
Sbjct: 235 VNNEYPGVPTATTKSGRPLKSIRQRL 260

[182][TOP]
>UniRef100_Q0W8G9 DNA-directed RNA polymerase n=1 Tax=uncultured methanogenic
           archaeon RC-I RepID=Q0W8G9_UNCMA
          Length = 877

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
 Frame = +1

Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
           G  L P       E +  ED+ +  M     RPE ++L  LPVPP+ +RP++  + S   
Sbjct: 167 GHKLMPTDVRDRLEMIPDEDIEVFGMDPRNARPEWMVLTVLPVPPVTVRPSITLE-SGQR 225

Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
           +EDDLT KL +I+ +N+   ++ + G P +++ D  E LQ     +M++  + +PP    
Sbjct: 226 SEDDLTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHVTTYMDNAVSGVPPARHR 285

Query: 517 TAKPLRGISQRL 552
           + +PL+ +SQRL
Sbjct: 286 SGRPLKTLSQRL 297

[183][TOP]
>UniRef100_A5ULN6 DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter smithii ATCC
           35061 RepID=A5ULN6_METS3
          Length = 894

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E ++ ED  ++ +     RPE L+L  LPVPP+ +RP++  D    S EDDLT KL +I+
Sbjct: 185 ERISDEDAFVLGVNPEVARPEWLVLTVLPVPPVTVRPSITLDTGERS-EDDLTHKLVDIL 243

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N+ L +++  G P +++ D  E LQ     + +++A+ +PP    + +PL+ ++QRL
Sbjct: 244 RINQRLIENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 302

[184][TOP]
>UniRef100_C7NTX8 DNA-directed RNA polymerase subunit A' n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NTX8_HALUD
          Length = 1013

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           D L P      FE +  +D+  I +     RPE +IL  LPVPP+  RP++  D    S 
Sbjct: 287 DKLMPSDIRDWFEEIPDDDLEAIGVNPETSRPEWMILTVLPVPPVTARPSITLDNGQRS- 345

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-ST 519
           EDDLT KL +I+ +N+   ++   G P +++ D  E LQ     FM+++ +  PP    +
Sbjct: 346 EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARHRS 405

Query: 520 AKPLRGISQRL 552
            +PL+ +SQRL
Sbjct: 406 GRPLKTLSQRL 416

[185][TOP]
>UniRef100_B9AEP6 DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter smithii DSM
           2375 RepID=B9AEP6_METSM
          Length = 894

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E ++ ED  ++ +     RPE L+L  LPVPP+ +RP++  D    S EDDLT KL +I+
Sbjct: 185 ERISDEDAFVLGVNPEVARPEWLVLTVLPVPPVTVRPSITLDTGERS-EDDLTHKLVDIL 243

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N+ L +++  G P +++ D  E LQ     + +++A+ +PP    + +PL+ ++QRL
Sbjct: 244 RINQRLIENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 302

[186][TOP]
>UniRef100_B9PZ91 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii GT1
           RepID=B9PZ91_TOXGO
          Length = 1747

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
 Frame = +1

Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336
           V DDL+PL    L E +   +  ++D+ +    PE+L+L  L VPP CIRP+V      G
Sbjct: 291 VEDDLDPLYVKNLLERIRPSECEILDIVS----PEKLLLSRLLVPPSCIRPSVTIGEQ-G 345

Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516
           +TEDDLT  L++I  +N  L   +  G      +   E+LQ++  R +N+DA  +  L +
Sbjct: 346 TTEDDLTCVLSDIAELNNVLQSHVQAGFHTNQFLGIWEFLQLQCTRLINADAPAVSQLLA 405

Query: 517 T---AKPLRGISQRL 552
           +   +KP RGI QRL
Sbjct: 406 SKNISKPGRGICQRL 420

[187][TOP]
>UniRef100_B6KRB8 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
           RepID=B6KRB8_TOXGO
          Length = 1746

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
 Frame = +1

Query: 157 VGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAG 336
           V DDL+PL    L E +   +  ++D+ +    PE+L+L  L VPP CIRP+V      G
Sbjct: 290 VEDDLDPLYVKNLLERIRPSECEILDIVS----PEKLLLSRLLVPPSCIRPSVTIGEQ-G 344

Query: 337 STEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS 516
           +TEDDLT  L++I  +N  L   +  G      +   E+LQ++  R +N+DA  +  L +
Sbjct: 345 TTEDDLTCVLSDIAELNNVLQSHVKAGFHTNQFLGIWEFLQLQCTRLINADAPAVSQLLA 404

Query: 517 T---AKPLRGISQRL 552
           +   +KP RGI QRL
Sbjct: 405 SKNISKPGRGICQRL 419

[188][TOP]
>UniRef100_A2BN34 DNA-directed RNA polymerase n=1 Tax=Hyperthermus butylicus DSM 5456
           RepID=A2BN34_HYPBU
          Length = 881

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           LNPL   +  E +  +D  L+       RPE ++L  LPVPP+ +RP++  +      ED
Sbjct: 177 LNPLEIRSRLERVPNDDARLLGFDPESARPEWMVLTVLPVPPIHVRPSIVLETGI-RAED 235

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST-AK 525
           DLT KL +IV  NE L + I+ G P  L+ +    LQ   A + +++   +P       +
Sbjct: 236 DLTHKLADIVRTNERLRELIDSGAPQTLIDEHWTLLQYHVATYFDNELPRIPVARHRGGR 295

Query: 526 PLRGISQRL 552
           PL+G++QRL
Sbjct: 296 PLKGLAQRL 304

[189][TOP]
>UniRef100_C7DHC4 DNA-directed RNA polymerase n=1 Tax=Candidatus Micrarchaeum
           acidiphilum ARMAN-2 RepID=C7DHC4_9EURY
          Length = 844

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
 Frame = +1

Query: 160 GDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGS 339
           G+ + P         +T ED+ + +M A   RPE  +L  L VPP+ +RP++  + S   
Sbjct: 174 GNKMKPDEIRDWLSGITDEDLKMFNMDAKAARPEWFVLTALLVPPVNVRPSITLE-SGER 232

Query: 340 TEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-S 516
           +EDDLT KL EI+ +N+ L + I+ G P +++ D  E LQ     + N++   +P     
Sbjct: 233 SEDDLTHKLVEIMRINQRLEQDIDAGAPQIIIDDLWELLQYHVTTYFNNETPGVPVARHR 292

Query: 517 TAKPLRGISQRL 552
           + +PL+ I+QRL
Sbjct: 293 STRPLKTIAQRL 304

[190][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016E658E
          Length = 1628

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 8/189 (4%)
 Frame = +1

Query: 10  GGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD------- 168
           GG        + ++ T+ ++ ++             +R+  +L      V +D       
Sbjct: 154 GGEEMDNKFGMEQQETEEDITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKIL 213

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L+P R   +F+ ++ E+  ++ M +   RPE +I+  LPVPPL +RP V    SA   +D
Sbjct: 214 LSPERVHEIFKRISDEEDIILGMDSKFARPEWMIVTVLPVPPLAVRPAVVMQGSA-RNQD 272

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525
           DLT KL +IV +N  L ++   G  A ++ +  + LQ   A  ++++   LP  +  + +
Sbjct: 273 DLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 332

Query: 526 PLRGISQRL 552
           PL+ I QRL
Sbjct: 333 PLKSIKQRL 341

[191][TOP]
>UniRef100_Q976A5 DNA-directed RNA polymerase n=1 Tax=Sulfolobus tokodaii
           RepID=Q976A5_SULTO
          Length = 884

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P       E +   D  L+       RPE +IL  LPVPP+ IRP++  + S    ED
Sbjct: 179 LTPSDIRERLERIPDSDYELLGYDPKYSRPEWMILTVLPVPPITIRPSITIE-SGIRAED 237

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +I+ +NE L +SI+ G P +++ D  + LQ   + + +++   +PP    + +
Sbjct: 238 DLTHKLVDIIRINERLKESIDAGAPQLIIEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGR 297

Query: 526 PLRGISQRL 552
           PLR ++QRL
Sbjct: 298 PLRTLAQRL 306

[192][TOP]
>UniRef100_C5A208 DNA-directed RNA polymerase n=1 Tax=Thermococcus gammatolerans EJ3
           RepID=C5A208_THEGJ
          Length = 905

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E +  +D+ L+ +     RPE +IL  LPVPP+ +RP++  + S    EDDLT KL +I+
Sbjct: 191 ERIPDKDLPLLGLHPEKSRPEWMILTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N  L  +I  G P +++ D  + LQ     ++N++ + +PP    + +PL+ ++QRL
Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRL 308

[193][TOP]
>UniRef100_A6UV50 DNA-directed RNA polymerase n=1 Tax=Methanococcus aeolicus Nankai-3
           RepID=A6UV50_META3
          Length = 888

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
 Frame = +1

Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
           + E +  ED  LI +     RPE +IL  LPVPP+ +RP++  + S   +EDDLT KL +
Sbjct: 186 ILEKIPDEDCMLIGVNPEVARPEWMILTSLPVPPVTVRPSITLE-SGERSEDDLTHKLVD 244

Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQR 549
           I+ +N+ L ++I  G P +++ D  + LQ     + +++A   PP    + +PLR I+QR
Sbjct: 245 IIRINQRLDENIEGGAPNLIIEDLWDLLQYHINTYFDNEAPGTPPARHRSGRPLRTIAQR 304

Query: 550 L 552
           L
Sbjct: 305 L 305

[194][TOP]
>UniRef100_UPI0001B119CD RNA polymerase alpha subunit n=1 Tax=Methanocaldococcus vulcanius
           M7 RepID=UPI0001B119CD
          Length = 1234

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P     + E +  ED  L+ +     RPE ++L  LPVPP+ +RP++  D    S ED
Sbjct: 71  LTPSDVREILEKIPDEDCILLGINPEVARPEWMVLTVLPVPPVTVRPSITLDTGERS-ED 129

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +I+ +N  L ++I  G P +++ D    LQ     + +++A  +PP    + +
Sbjct: 130 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHINTYFDNEAPGIPPAKHRSGR 189

Query: 526 PLRGISQRL 552
           PL+ ++QRL
Sbjct: 190 PLKTLAQRL 198

[195][TOP]
>UniRef100_B9FFW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
           RepID=B9FFW1_ORYSJ
          Length = 1321

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 47/128 (36%), Positives = 72/128 (56%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L+P   L+LF+ MT ED  L+++   G RPE+LI+  + VPP+ IRP+V       S ED
Sbjct: 216 LDPAIVLSLFKRMTDEDCELLNL---GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNED 272

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKP 528
            +T+ L  I + N  L +++  GG  +   D  + LQ++   ++NSDA +LP        
Sbjct: 273 SITVILKSIANTNSILKENLQTGGQFMKCFDCWQHLQLQVVEYINSDAPSLP-----ESQ 327

Query: 529 LRGISQRL 552
            RG+ QRL
Sbjct: 328 HRGLVQRL 335

[196][TOP]
>UniRef100_Q7X881 DNA-directed RNA polymerase n=3 Tax=Oryza sativa RepID=Q7X881_ORYSJ
          Length = 1383

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 47/128 (36%), Positives = 72/128 (56%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L+P   L+LF+ MT ED  L+++   G RPE+LI+  + VPP+ IRP+V       S ED
Sbjct: 215 LDPAIVLSLFKRMTDEDCELLNL---GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNED 271

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLASTAKP 528
            +T+ L  I + N  L +++  GG  +   D  + LQ++   ++NSDA +LP        
Sbjct: 272 SITVILKSIANTNSILKENLQTGGQFMKCFDCWQHLQLQVVEYINSDAPSLP-----ESQ 326

Query: 529 LRGISQRL 552
            RG+ QRL
Sbjct: 327 HRGLVQRL 334

[197][TOP]
>UniRef100_A8X1M6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae
           RepID=A8X1M6_CAEBR
          Length = 1435

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGR-PERLILRYLPVPPLCIRPTVCSDPSAGSTE 345
           LNPL    LF  +   D+ ++ +R+   + P  L+L  +PVPP+CIRP+V S+  +G+TE
Sbjct: 225 LNPLFVQKLFANIKEADIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKSGTTE 284

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARF 477
           DD+TMKL EI+  N+ L K    G PA  L +  E LQV +  F
Sbjct: 285 DDVTMKLMEIMLTNDVLKKHKRDGAPAKTLFETWEHLQVWSLSF 328

[198][TOP]
>UniRef100_Q2PYS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spizellomyces
           punctatus RepID=Q2PYS4_SPIPN
          Length = 792

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
 Frame = +1

Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
           LF+ ++ +D   + +     RPE +I+  LPVPP+ +RP V  D  A + +DDLT KL +
Sbjct: 139 LFQKISEDDCMSLGLNPDWARPEWMIITVLPVPPMAVRPAVSMDGVA-TNQDDLTHKLRD 197

Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPP-LASTAKPLRGISQR 549
           IV  N  L K    G PA ++ +  + LQ   A +M++D   LPP L  + +PL+ I  R
Sbjct: 198 IVLANSFLRKHETEGSPAHVINEFEKLLQYHIATYMDNDIAGLPPSLQKSGRPLKSIRAR 257

Query: 550 L 552
           L
Sbjct: 258 L 258

[199][TOP]
>UniRef100_O59227 DNA-directed RNA polymerase n=1 Tax=Pyrococcus horikoshii
           RepID=O59227_PYRHO
          Length = 907

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E +  +D+ L+ +     RPE ++L  LPVPP+ +RP++  +    + EDDLT KL +I+
Sbjct: 191 EKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTVRPSITLETGIRA-EDDLTHKLVDII 249

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N  L ++I  G P +++ D  + LQ     ++N++ + +PP    + +PL+ ++QRL
Sbjct: 250 RINNRLRQNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308

[200][TOP]
>UniRef100_B6YT16 DNA-directed RNA polymerase n=1 Tax=Thermococcus onnurineus NA1
           RepID=B6YT16_THEON
          Length = 905

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E +  +D+ L+ +     RPE ++L  LPVPP+ +RP++  + S    EDDLT KL +I+
Sbjct: 191 EKIPDKDLPLLGLHPEKARPEWMVLTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N  L  +I  G P +++ D  + LQ     ++N++ + +PP    + +PL+ ++QRL
Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRL 308

[201][TOP]
>UniRef100_C9RDK8 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanocaldococcus
           vulcanius M7 RepID=C9RDK8_9EURY
          Length = 1343

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P     + E +  ED  L+ +     RPE ++L  LPVPP+ +RP++  D    S ED
Sbjct: 180 LTPSDVREILEKIPDEDCILLGINPEVARPEWMVLTVLPVPPVTVRPSITLDTGERS-ED 238

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +I+ +N  L ++I  G P +++ D    LQ     + +++A  +PP    + +
Sbjct: 239 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHINTYFDNEAPGIPPAKHRSGR 298

Query: 526 PLRGISQRL 552
           PL+ ++QRL
Sbjct: 299 PLKTLAQRL 307

[202][TOP]
>UniRef100_B7R289 DNA-directed RNA polymerase n=1 Tax=Thermococcus sp. AM4
           RepID=B7R289_9EURY
          Length = 905

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E +  +D+ L+ +     RPE +IL  LPVPP+ +RP++  + S    EDDLT KL +I+
Sbjct: 191 ERIPDKDLPLLGLHPEKSRPEWMILTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N  L  +I  G P +++ D  + LQ     ++N++ + +PP    + +PL+ ++QRL
Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308

[203][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
           RepID=UPI00017B0A92
          Length = 1714

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 8/189 (4%)
 Frame = +1

Query: 10  GGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDD------- 168
           GG        + ++ T+ ++ ++             +R+  +L      V +D       
Sbjct: 134 GGEEMDNKFGMEQQETEEDITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKIL 193

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L+P R   +F+ ++ E+  ++ M     RPE +I+  LPVPPL +RP V    SA   +D
Sbjct: 194 LSPERVHEIFKRISDEEDMILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSA-RNQD 252

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525
           DLT KL +IV +N  L ++   G  A ++ +  + LQ   A  ++++   LP  +  + +
Sbjct: 253 DLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGR 312

Query: 526 PLRGISQRL 552
           PL+ I QRL
Sbjct: 313 PLKSIKQRL 321

[204][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
           CCMP1335 RepID=B8BQ02_THAPS
          Length = 1627

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
 Frame = +1

Query: 133 DLERHLSRVGDD---LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCI 303
           ++ER     GD    ++  + + +F+ M  ++V  + +     RPE + +  +PVPPL +
Sbjct: 191 EMERVPGSSGDKKQFMSAQKAVDIFKKMRDDEVKALGLDVTWARPEWMCVSVMPVPPLHV 250

Query: 304 RPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMN 483
           RP+V     A S+EDDLT +L  IV  N AL  +I  G P +++    + LQ   A F+N
Sbjct: 251 RPSVVMGGGAQSSEDDLTHQLVNIVKSNIALKTAIQNGEPNIIVEQFEQALQHNVAAFVN 310

Query: 484 SDATNLPPLAS-TAKPLRGISQRL 552
           ++   +P +   + +PL+ ++QRL
Sbjct: 311 NEMRGMPQITQRSGRPLKTLAQRL 334

[205][TOP]
>UniRef100_Q8IE49 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
           RepID=Q8IE49_PLAF7
          Length = 2356

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           +DLN L  L LF+ +    V L+++      PE+LI+  L VPP  IRP+V  D   G+ 
Sbjct: 216 EDLNSLYVLKLFKNINPYHVKLLNIE----NPEKLIITALLVPPNTIRPSVIIDEH-GTA 270

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
           EDDLT  L+EI  +N  +      G      +   E+LQ++  RF+NSD+  +  L +T 
Sbjct: 271 EDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 330

Query: 520 --AKPLRGISQRL 552
             +KP RGI QRL
Sbjct: 331 NISKPGRGICQRL 343

[206][TOP]
>UniRef100_Q25151 DNA-directed RNA polymerase (Fragment) n=1 Tax=Helobdella stagnalis
           RepID=Q25151_9ANNE
          Length = 1337

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +RN  +L     ++ DD       L   R L +F+A+T E   ++ M     RP+ LI  
Sbjct: 99  RRNLLELTAEWKQINDDNQEKKMILTAERVLEIFKAITDETCTILGMDPKYARPDWLIAT 158

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            LPVPPL +RP V    SA   +DDLT KL +I+ +N  L ++   G  A +L +  + L
Sbjct: 159 MLPVPPLPVRPAVVMFGSA-KNQDDLTHKLADIIKINNQLKRNEMNGAAAHILAEDTKML 217

Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           Q   A  ++++   LP     + +PL+ I QRL
Sbjct: 218 QFHVATMIDNEMPGLPRATQKSGRPLKSIKQRL 250

[207][TOP]
>UniRef100_Q0U9K8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0U9K8_PHANO
          Length = 1720

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 3/184 (1%)
 Frame = +1

Query: 10  GGRGAARSINLYKKPTKTELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTL 189
           GG G      + K+  K     + K        GD K              + L P   L
Sbjct: 175 GGCGNTNPDTIRKEGVKLTATYKPKKGEDSDGQGDRK--------------EVLTPQHAL 220

Query: 190 ALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST--EDDLTMK 363
            +F+ ++   +AL+ + A   RPE +I+  LPVPP  +RP++  D +      EDDLT K
Sbjct: 221 NVFKLLSDNTLALLGLNADYARPEWMIMTVLPVPPPPVRPSISVDGTGQGMRGEDDLTYK 280

Query: 364 LTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL-ASTAKPLRGI 540
           L +I+  N+ + + I+ G P  +L +    +Q   A +M++DA  +PP    + +PL+ I
Sbjct: 281 LGDIIRANQRVQECISEGAPQHILNEFEALVQYHVATYMDNDANGIPPSNQKSGRPLKTI 340

Query: 541 SQRL 552
             RL
Sbjct: 341 RGRL 344

[208][TOP]
>UniRef100_Q5JE33 DNA-directed RNA polymerase n=1 Tax=Thermococcus kodakarensis
           RepID=Q5JE33_PYRKO
          Length = 906

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E +  +D+ L+ +     RPE ++L  LPVPP+ +RP++  + S    EDDLT KL +I+
Sbjct: 191 EKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLE-SGIRAEDDLTHKLVDII 249

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N  L  +I  G P +++ D  + LQ     ++N++ + +PP    + +PL+ ++QRL
Sbjct: 250 RINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308

[209][TOP]
>UniRef100_Q18EX6 DNA-directed RNA polymerase n=1 Tax=Haloquadratum walsbyi DSM 16790
           RepID=Q18EX6_HALWD
          Length = 978

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
 Frame = +1

Query: 163 DDLNPLRTLAL---FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSA 333
           +D+N L    +   FE++  ED+  + +     RPE +++  LPVPP+  RP++  D   
Sbjct: 242 EDMNKLMASDIRDWFESIPDEDIRTLGIDPSRARPEWMVMTVLPVPPVTARPSITLDNGQ 301

Query: 334 GSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA 513
            S EDDLT KL +I+ +N+   ++   G P +++ D  E LQ     F++++ +  PP  
Sbjct: 302 RS-EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPAR 360

Query: 514 -STAKPLRGISQRL 552
             + +PL+ +SQRL
Sbjct: 361 HRSGRPLKTLSQRL 374

[210][TOP]
>UniRef100_A0RXW9 DNA-directed RNA polymerase n=1 Tax=Cenarchaeum symbiosum
           RepID=A0RXW9_CENSY
          Length = 1260

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 43/136 (31%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
 Frame = +1

Query: 151 SRVGDD-LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDP 327
           + +G++ L P+     F  +T ED+ L+       RPE  IL+ LPVPP+ +RP++  + 
Sbjct: 171 TEIGENRLLPITIREKFSQITNEDLVLLGYDPATARPEWFILQALPVPPVTVRPSIILET 230

Query: 328 SAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPP 507
              S EDDLT K+ +I+ +N+ L +S   G P +++ D  + LQ  A  + +++ + +P 
Sbjct: 231 GIRS-EDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHATTYFDNEISGIPQ 289

Query: 508 L-ASTAKPLRGISQRL 552
               + +PL+ ++QRL
Sbjct: 290 AHHRSGRPLKTLTQRL 305

[211][TOP]
>UniRef100_C1V769 DNA-directed RNA polymerase n=1 Tax=Halogeometricum borinquense DSM
           11551 RepID=C1V769_9EURY
          Length = 978

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
 Frame = +1

Query: 163 DDLNPLRTLAL---FEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSA 333
           +D+N L    +   FE +  ED+  + +     RPE +IL  LPVPP+  RP++  D   
Sbjct: 242 EDMNKLMPSDIRDWFEDIPDEDIVTLGIDPSRARPEWMILTVLPVPPVTARPSITLDNGQ 301

Query: 334 GSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA 513
            S EDDLT KL +I+ +N+   ++   G P +++ D  E LQ     F++++ +  PP  
Sbjct: 302 RS-EDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPAR 360

Query: 514 -STAKPLRGISQRL 552
             + +PL+ +SQRL
Sbjct: 361 HRSGRPLKTLSQRL 374

[212][TOP]
>UniRef100_P27625 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Plasmodium
           falciparum RepID=RPC1_PLAFA
          Length = 2339

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           +DLN L  L LF+ +    V L+++      PE+LI+  L VPP  IRP+V  D   G+ 
Sbjct: 216 EDLNSLYVLKLFKNINPYHVKLLNIE----NPEKLIITALLVPPNTIRPSVIIDEH-GTA 270

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
           EDDLT  L+EI  +N  +      G      +   E+LQ++  RF+NSD+  +  L +T 
Sbjct: 271 EDDLTCILSEITQLNNTIYNQCTNGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQ 330

Query: 520 --AKPLRGISQRL 552
             +KP RGI QRL
Sbjct: 331 NISKPGRGICQRL 343

[213][TOP]
>UniRef100_Q8U0M4 DNA-directed RNA polymerase n=1 Tax=Pyrococcus furiosus
           RepID=Q8U0M4_PYRFU
          Length = 907

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P       E +  +D+ L+ +     RPE ++L  LPVPP+  RP++  +    + ED
Sbjct: 178 LMPTEVRDWLEKIPDKDLPLLGLDPEKSRPEWMVLTVLPVPPVTARPSITLETGIRA-ED 236

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +I+ +N  L ++I  G P +++ D  + LQ     ++N++A  +PP    + +
Sbjct: 237 DLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNEAPGVPPAKHKSGR 296

Query: 526 PLRGISQRL 552
           PL+ ++QRL
Sbjct: 297 PLKTLAQRL 305

[214][TOP]
>UniRef100_Q2NEK4 DNA-directed RNA polymerase n=1 Tax=Methanosphaera stadtmanae DSM
           3091 RepID=Q2NEK4_METST
          Length = 873

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E +  ED   I +     RPE ++L  LPVPP+ +RP++  +    S EDDLT KL +I+
Sbjct: 181 EMIPEEDYIFIGINPKVARPEWMVLTVLPVPPVTVRPSITLETGERS-EDDLTHKLVDIL 239

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N+ L +++  G P +++ D  E LQ     + +++A+ +PP    + +PL+ ++QRL
Sbjct: 240 RINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRL 298

[215][TOP]
>UniRef100_C6A1G0 DNA-directed RNA polymerase n=1 Tax=Thermococcus sibiricus MM 739
           RepID=C6A1G0_THESM
          Length = 905

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E +  +D+ L+ +     RPE ++L  LPVPP+ +RP++  + S    EDDLT KL +I+
Sbjct: 191 EKIPDKDLPLLGLNPENSRPEWMVLTVLPVPPVSVRPSITLE-SGIRAEDDLTHKLVDII 249

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N  L ++I  G P +++ D  + LQ     + +++ + +PP    + +PL+ ++QRL
Sbjct: 250 RINARLKQNIEAGAPQLIIEDLWDLLQYHVTTYFDNETSGIPPAKHKSGRPLKTLAQRL 308

[216][TOP]
>UniRef100_C7P941 DNA-directed RNA polymerase subunit A' n=1 Tax=Methanocaldococcus
           fervens AG86 RepID=C7P941_METFA
          Length = 891

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P     + E +  ED  L+ +     RPE ++L  LPVPP+ +RP++  +    S ED
Sbjct: 180 LTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-ED 238

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +I+ +N  L ++I  G P +++ D    LQ     + +++A  +PP    + +
Sbjct: 239 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGR 298

Query: 526 PLRGISQRL 552
           PL+ ++QRL
Sbjct: 299 PLKTLAQRL 307

[217][TOP]
>UniRef100_Q58445 Mja rpoA1 intein n=1 Tax=Methanocaldococcus jannaschii
           RepID=RPOA1_METJA
          Length = 1341

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P     + E +  ED  L+ +     RPE ++L  LPVPP+ +RP++  +    S ED
Sbjct: 178 LTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPVPPVTVRPSITLETGERS-ED 236

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +I+ +N  L ++I  G P +++ D    LQ     + +++A  +PP    + +
Sbjct: 237 DLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGR 296

Query: 526 PLRGISQRL 552
           PL+ ++QRL
Sbjct: 297 PLKTLAQRL 305

[218][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
           elegans RepID=RPB1_CAEEL
          Length = 1852

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
 Frame = +1

Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
           R L +F+ +T ED+ +I M     RPE +I   LPVPPL +RP V +  SA   +DDLT 
Sbjct: 214 RVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSA-KNQDDLTH 272

Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST-AKPLRG 537
           KL++I+  N+ L ++   G  A +L D    LQ   A  +++    LP       +PL+ 
Sbjct: 273 KLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKS 332

Query: 538 ISQRL 552
           I QRL
Sbjct: 333 IKQRL 337

[219][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
           RepID=Q84KP6_CYAME
          Length = 1819

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
 Frame = +1

Query: 133 DLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPT 312
           D E   +    +L   R   +F  +  ED+ L+       RPE ++L  LPVPP  +RP+
Sbjct: 199 DAEAFAAERKQELAAERVQQIFRHIRDEDLELLGFHPRFSRPEWMVLSVLPVPPPHVRPS 258

Query: 313 VCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDA 492
           +  D +    EDDLT KL +I+  N AL +    G PA ++ +    LQ   A FMN+D 
Sbjct: 259 IQMD-AVSRGEDDLTFKLGDIIKANNALQRLEAEGAPAHVIREQYVLLQFHVATFMNNDL 317

Query: 493 TNLP-PLASTAKPLRGISQRL 552
             +P     + +PL+ I+QRL
Sbjct: 318 PGMPRATLRSGRPLKSIAQRL 338

[220][TOP]
>UniRef100_Q70GL5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cercomonas sp. ATCC
           50318 RepID=Q70GL5_9EUKA
          Length = 417

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L+P +   +F  ++ ED   + +  V  RP+  +L  LPVPP  +RP+V  D SA    D
Sbjct: 132 LSPSKIYDIFRNISDEDCRALGLDPVNARPDWFLLTVLPVPPPPVRPSVMFD-SATRASD 190

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525
           DLT KL++IV +NE L K    G    +L D  + LQ   A   +++ + LP     + K
Sbjct: 191 DLTYKLSDIVKVNEQLKKQEAQGAAEHILQDSADVLQFHVATLFDNEISGLPRSTQRSGK 250

Query: 526 PLRGISQRL 552
           P++ I QRL
Sbjct: 251 PIKSIRQRL 259

[221][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
           yFS275 RepID=B6JYP8_SCHJY
          Length = 1748

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
 Frame = +1

Query: 106 YGDAKRNNADLERHLSRVGDDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLP 285
           +G  K+   D +    R+   LNPL    +F+ +++ED+  + +     RP+ +I+  LP
Sbjct: 190 WGSWKKGKDDSDLPEKRL---LNPLEVHTIFKHISSEDLVYMGLNEQYARPDWMIITVLP 246

Query: 286 VPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVE 465
           VPP  +RP++  D S+   EDDLT KL++I+  N  + +    G PA ++ +  + LQ  
Sbjct: 247 VPPPSVRPSISVDGSSRG-EDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFH 305

Query: 466 AARFMNSDATNLP-PLASTAKPLRGISQRL 552
            A +M+++    P  L  + +PL+ I  RL
Sbjct: 306 VATYMDNEIAGQPQALQKSGRPLKSIRARL 335

[222][TOP]
>UniRef100_A5H290 DNA-directed RNA polymerase (Fragment) n=1 Tax=Physconia muscigena
           RepID=A5H290_9LECA
          Length = 391

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST-E 345
           + P   LA+F  M+ ED+ ++ M     RPE +I+  LPVPP  +RP++  D   G T E
Sbjct: 141 ITPAMALAIFLQMSPEDIKIMGMSNDYARPEWMIITVLPVPPPPVRPSIKVDSGDGPTGE 200

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522
           DDLT KL +I+  N  + +    G PA ++ +    LQ   A +M++D    P  L  + 
Sbjct: 201 DDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSG 260

Query: 523 KPLRGISQRL 552
           +P++ I  RL
Sbjct: 261 RPVKAIRARL 270

[223][TOP]
>UniRef100_A2SSM4 DNA-directed RNA polymerase n=1 Tax=Methanocorpusculum labreanum Z
           RepID=A2SSM4_METLZ
          Length = 889

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 6/176 (3%)
 Frame = +1

Query: 43  YKKPTK-----TELREQAKSAAMESAYGDAKRNNADLERHLSRVGDDLNPLRTLALFEAM 207
           ++KPT      TE+ E  K    E      K  +AD+   L ++ DD             
Sbjct: 151 FEKPTSFVEIVTEMGEDGKVHKSER-----KLTSADIRERLEKIPDD------------- 192

Query: 208 TAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMN 387
              D+ L+ +     RPE  +L  LPVPP+ +RP++  +    S EDDLT KL +I+ +N
Sbjct: 193 ---DLRLLGIDPEVARPEWTVLTVLPVPPVTVRPSIILENGQRS-EDDLTHKLVDIIRIN 248

Query: 388 EALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
           +   ++ + G P +++ D  E LQ     +++++    PP    + +PL+ +SQRL
Sbjct: 249 QRFKENQDAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRPLKTLSQRL 304

[224][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
           briggsae RepID=RPB1_CAEBR
          Length = 1853

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
 Frame = +1

Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
           R L +F+ +T ED+ +I M     RPE +I   LPVPPL +RP V +  SA   +DDLT 
Sbjct: 214 RVLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSA-KNQDDLTH 272

Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST-AKPLRG 537
           KL++I+  N+ L ++   G  A +L D    LQ   A  +++    LP       +PL+ 
Sbjct: 273 KLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKS 332

Query: 538 ISQRL 552
           I QRL
Sbjct: 333 IKQRL 337

[225][TOP]
>UniRef100_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon
           nigroviridis RepID=Q4SF83_TETNG
          Length = 1745

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +R+  +L      V +D       L+P R   +F+ ++ E+  ++ M     RPE +I+ 
Sbjct: 13  RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKFARPEWMIVT 72

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            LPVPPL +RP V    SA   +DDLT KL +IV +N  L ++   G  A ++ +  + L
Sbjct: 73  VLPVPPLAVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLL 131

Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           Q   A  ++++   LP  +  + +PL+ I QRL
Sbjct: 132 QFHVATMVDNELPGLPRAMQKSGRPLKSIKQRL 164

[226][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
           tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
          Length = 1706

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
 Frame = +1

Query: 193 LFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTE 372
           +F+ +  ED+ L+ +     RP+ L+++ LPVPPL +RP+V       S+EDDLT +L  
Sbjct: 145 IFKQIREEDIVLLGLDVQHARPDWLLVQVLPVPPLHVRPSVTVGGGTQSSEDDLTHQLVN 204

Query: 373 IVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAS-TAKPLRGISQR 549
           ++  N +L ++++ G P +++      LQ   A FM+++   +P +   + +PL+ I+QR
Sbjct: 205 VIKSNLSLQQAVSNGEPQIVVEQFELALQHNVAAFMDNELRGMPQVTQRSGRPLKTITQR 264

Query: 550 L 552
           L
Sbjct: 265 L 265

[227][TOP]
>UniRef100_Q7RQQ6 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii
           RepID=Q7RQQ6_PLAYO
          Length = 2020

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           +DLN L  L LF+ +    + L+++      PE+LI+  L VPP  IRP+V  D   G+ 
Sbjct: 216 EDLNSLYVLKLFKNINPFYIKLLNIE----NPEKLIITTLIVPPNTIRPSVIIDEH-GTA 270

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
           EDDLT  L+EI  +N  +    + G      +   E+LQ++  RF+NSD+  +  L +T 
Sbjct: 271 EDDLTCILSEIAQLNNTINSQSSNGYQTNQFLGNIEFLQLQVTRFINSDSPAVSQLLATQ 330

Query: 520 --AKPLRGISQRL 552
             +KP RGI QRL
Sbjct: 331 NISKPGRGICQRL 343

[228][TOP]
>UniRef100_A5H2F1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tornabea
           scutellifera RepID=A5H2F1_9LECA
          Length = 993

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST-E 345
           + P   LA+F+AM+ +D+  + +     RPE +I+  LPVPP  +RP++  D   G T E
Sbjct: 115 ITPKMALAVFQAMSTDDIKKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVDGGDGPTGE 174

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522
           DDLT KL +I+  N  + +    G PA ++ +    LQ   A +M++D    P  L  + 
Sbjct: 175 DDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSG 234

Query: 523 KPLRGISQRL 552
           +P++ I  RL
Sbjct: 235 RPVKAIRARL 244

[229][TOP]
>UniRef100_Q9V114 DNA-directed RNA polymerase n=1 Tax=Pyrococcus abyssi
           RepID=Q9V114_PYRAB
          Length = 907

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = +1

Query: 199 EAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIV 378
           E +  +D+ L+ +     RPE ++L  LPVPP+  RP++  +    + EDDLT KL +I+
Sbjct: 191 EKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTARPSITLETGIRA-EDDLTHKLVDII 249

Query: 379 HMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRGISQRL 552
            +N  L ++I  G P +++ D  + LQ     ++N++ + +PP    + +PL+ ++QRL
Sbjct: 250 RINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRL 308

[230][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
           RepID=UPI0000546D90
          Length = 1972

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +R+  +L      V +D       L+P R   +F+ +  E+  ++ M     RPE +I+ 
Sbjct: 189 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVT 248

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            LPVPPL +RP V    SA   +DDLT KL +IV +N  L ++   G  A ++ +  + L
Sbjct: 249 VLPVPPLAVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLL 307

Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           Q   A  ++++   LP  +  + +PL+ I QRL
Sbjct: 308 QFHVATMVDNELPGLPRAMQKSGRPLKSIKQRL 340

[231][TOP]
>UniRef100_UPI0001A2D831 POLR2A protein n=1 Tax=Danio rerio RepID=UPI0001A2D831
          Length = 563

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +R+  +L      V +D       L+P R   +F+ +  E+  ++ M     RPE +I+ 
Sbjct: 189 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVT 248

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            LPVPPL +RP V    SA   +DDLT KL +IV +N  L ++   G  A ++ +  + L
Sbjct: 249 VLPVPPLAVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLL 307

Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           Q   A  ++++   LP  +  + +PL+ I QRL
Sbjct: 308 QFHVATMVDNELPGLPRAMQKSGRPLKSIKQRL 340

[232][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
           RepID=Q9AXN0_9RHOD
          Length = 1746

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
 Frame = +1

Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
           + L++F+ ++ +D+ ++ +     RPE  IL   PVPP  IRP+V  D S    EDDLT 
Sbjct: 192 KVLSIFKHISDDDIEIMGLSPQHSRPEWFILTLFPVPPPHIRPSVMMDASMRG-EDDLTY 250

Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL-ASTAKPLRG 537
           KL +IV  N AL +    G PA  L +    LQ      MN+D   +P     + +P++ 
Sbjct: 251 KLGDIVRNNNALREMERTGAPAHRLNEQIHVLQAHIITIMNNDLPGMPRAHQKSGRPIKS 310

Query: 538 ISQRL 552
           ISQRL
Sbjct: 311 ISQRL 315

[233][TOP]
>UniRef100_Q5CWY0 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium parvum
           RepID=Q5CWY0_CRYPV
          Length = 1871

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           +DL P+    L E +  +D+ +++      +P  L++  LPVPP CIRP+V    S GS 
Sbjct: 214 EDLTPIFVQTLLERVPYQDLDILETF----KPGNLLISRLPVPPNCIRPSVTMGES-GSN 268

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
           EDDLT+ L+EI  +N  +   +  G     L+   E+LQ++  R +N+DA  +  L ++ 
Sbjct: 269 EDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGVNQLLASK 328

Query: 520 --AKPLRGISQRL 552
              K  RG+ QRL
Sbjct: 329 NIPKAGRGVCQRL 341

[234][TOP]
>UniRef100_Q5CK97 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
           RepID=Q5CK97_CRYHO
          Length = 1869

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           +DL P+    L E +  +D+ +++      +P  L++  LPVPP CIRP+V    S GS 
Sbjct: 214 EDLTPIFVQTLLERVPYQDLDILETF----KPGNLLISRLPVPPNCIRPSVTMGES-GSN 268

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLAST- 519
           EDDLT+ L+EI  +N  +   +  G     L+   E+LQ++  R +N+DA  +  L ++ 
Sbjct: 269 EDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGVNQLLASK 328

Query: 520 --AKPLRGISQRL 552
              K  RG+ QRL
Sbjct: 329 NIPKAGRGVCQRL 341

[235][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
           RepID=B3RM26_TRIAD
          Length = 1784

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +RN  +L     ++ +D       L   R   +F+ ++ ED  ++ M     RP+ +I+ 
Sbjct: 180 RRNGLELTAEWKKINEDSQERKINLTAERVYEIFKRISDEDSEVLGMDPRFARPDWMIIT 239

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            LPVPPL +RP+V    SA S +DDLT KL +I+  N  L ++ + G PA ++ +    L
Sbjct: 240 CLPVPPLHVRPSVVMHGSARS-QDDLTHKLADIIKANNNLQRNESCGAPAHVITEDTRML 298

Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           Q       +++   +P  +  + +PL+ I QRL
Sbjct: 299 QFHVTTLTDNEVPGMPKAMQKSGRPLKSIKQRL 331

[236][TOP]
>UniRef100_Q2PYS3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cladochytrium
           replicatum RepID=Q2PYS3_9FUNG
          Length = 981

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
 Frame = +1

Query: 181 RTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTM 360
           + LALFE+++  D   + +     RPE +I++ L VPPL +RP+V  D   G +EDDLT 
Sbjct: 112 KVLALFESISESDQEAMGLSPEWARPEWMIIQVLLVPPLSVRPSVHMD-GMGRSEDDLTH 170

Query: 361 KLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAKPLRG 537
           KL +I+  N  L K    G P  L+ D    LQ   A +MN++ + +P     + +P++ 
Sbjct: 171 KLMDIIKANNNLRKHEADGSPPHLVTDLESILQYHVATYMNNELSGVPTATQKSGRPIKS 230

Query: 538 ISQRL 552
           I  RL
Sbjct: 231 IRDRL 235

[237][TOP]
>UniRef100_Q1W1U5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Fistulina antarctica
           RepID=Q1W1U5_9APHY
          Length = 411

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L+P    A+F+ ++ +D++++ +     RPE +IL  LPVPP  +RP++  D     +ED
Sbjct: 129 LSPSEVYAIFKKISDDDLSMLGLSEEYARPEWMILTVLPVPPPPVRPSIAVDGGVMRSED 188

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525
           DLT KL +I+  +  + +    G P  ++ +  + LQ   A +M++D   +P  L  + +
Sbjct: 189 DLTYKLGDIIKASANVRRCEQEGAPGHIITEFEQLLQFHVATYMDNDIAGIPQALQKSGR 248

Query: 526 PLRGISQRL 552
           P++ I  RL
Sbjct: 249 PVKAIRARL 257

[238][TOP]
>UniRef100_A1YIB1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phragmidium sp. MB
           RepID=A1YIB1_9BASI
          Length = 1013

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
 Frame = +1

Query: 214 EDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEA 393
           ED+ ++ +     RPE ++L  LP+PP  +RP++  D  A   EDDLT KL E++  N+A
Sbjct: 153 EDLRIMGLHTEEARPEWMVLTALPIPPPPVRPSIAMDGGATRGEDDLTYKLAEVIKTNKA 212

Query: 394 LAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           L + I  G PA ++ +    LQ   A +M++D    P  +  + +P++ I  RL
Sbjct: 213 LGEHILAGSPAHIITEFETLLQWHIATYMDNDLPGQPQAMQKSGRPIKSIRARL 266

[239][TOP]
>UniRef100_Q1W1V4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Clavulinopsis
           laeticolor RepID=Q1W1V4_CLALA
          Length = 413

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
 Frame = +1

Query: 106 YGDAKRNNADLERHLSRVGDD--LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRY 279
           Y   KR   D E   S + D     P     LF+ +T  D+ L+ +     RPE  IL  
Sbjct: 110 YVQYKRPKDDDEEVKSALADKRLFTPADIYVLFKKITDTDLDLLGLSGEYARPEWXILTI 169

Query: 280 LPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQ 459
           LPVPP  +RP++  D     +EDDLT KL +I+  +  + +    G PA ++M+  + LQ
Sbjct: 170 LPVPPPPVRPSIAVDGGVMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVIMEFEQLLQ 229

Query: 460 VEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
              A +M+++   +P  L  + +P++ I  RL
Sbjct: 230 FHVATYMDNNIAGIPQALQKSGRPVKAIRARL 261

[240][TOP]
>UniRef100_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348
           RepID=A9CTM9_ENTBH
          Length = 1174

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 40/113 (35%), Positives = 67/113 (59%)
 Frame = +1

Query: 163 DDLNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST 342
           D+LNPL    LF+ +   D+  +  +     P  L+++ L VPP CIRP+V  D   G  
Sbjct: 170 DELNPLTVYNLFKNIKETDLLFLSCK----NPCNLLIKTLLVPPCCIRPSVDMDQD-GFN 224

Query: 343 EDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNL 501
           EDDLT+KL+EI++ N  + ++I  G   + L +  ++LQ++ A ++NSD  ++
Sbjct: 225 EDDLTVKLSEIINCNNLIEENIKKGASLITLNEDWDYLQLQIALYINSDLPSI 277

[241][TOP]
>UniRef100_A7J591 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anaptychia palmatula
           RepID=A7J591_9LECA
          Length = 1020

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGST-E 345
           + P   LA+F  M+ ED+  + M     RPE +I+  LPVPP  +RP++  D   G T E
Sbjct: 140 ITPAMALAIFLQMSPEDIKTMGMSNDYARPEWMIITVLPVPPPPVRPSIKVDSGDGPTGE 199

Query: 346 DDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTA 522
           DDLT KL +I+  N  + +    G PA ++ +    LQ   A +M++D    P  L  + 
Sbjct: 200 DDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKSG 259

Query: 523 KPLRGISQRL 552
           +P++ I  RL
Sbjct: 260 RPVKAIRARL 269

[242][TOP]
>UniRef100_A1YIB2 DNA-directed RNA polymerase (Fragment) n=2 Tax=Smittium culisetae
           RepID=A1YIB2_SMICU
          Length = 1025

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L  L+ L + + ++  DV  I M     RPE LI+  +PVPP+C+RP++  D +  S ED
Sbjct: 142 LTVLQVLQVLKKISDTDVRAIGMNPEYARPEWLIISVMPVPPMCVRPSIQMDATRHS-ED 200

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLP-PLASTAK 525
           DLT KL +I+  N  +      G P  ++ +    LQ   A F+N+D + +P  L  + +
Sbjct: 201 DLTYKLNDILKANARVRSCEVEGAPQHIIDEFETLLQFHVATFINNDISGIPQALQKSGR 260

Query: 526 PLRGISQRL 552
           P++ I  RL
Sbjct: 261 PIKSIRARL 269

[243][TOP]
>UniRef100_A1RWW5 DNA-directed RNA polymerase n=1 Tax=Thermofilum pendens Hrk 5
           RepID=A1RWW5_THEPD
          Length = 888

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L PL        +   D+ ++ +     RPE ++LR +PV P  +RP++  + S   +ED
Sbjct: 179 LTPLEIWERLSRIPEGDLRVVGIDPKEARPEWMVLRVIPVVPPSVRPSITLE-SGDRSED 237

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPLA-STAK 525
           DLT KL +I+ +N+ L ++I+ G P++++ D    LQ   A + +++   +PP    + +
Sbjct: 238 DLTHKLVDIIRVNQRLKENIDAGSPSLVIEDLWNLLQFHVATYFDNELPGIPPARHRSGR 297

Query: 526 PLRGISQRL 552
           PLR ++QRL
Sbjct: 298 PLRTLAQRL 306

[244][TOP]
>UniRef100_B3T7L4 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
           HF4000_APKG3E18 RepID=B3T7L4_9ARCH
          Length = 1273

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 41/136 (30%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
 Frame = +1

Query: 151 SRVGDD-LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDP 327
           +++G++ L P+     F  +T +D+ L++      RPE  IL+ LPVPP+ +RP++  + 
Sbjct: 176 TKLGENRLLPITIRERFSQITDDDLRLLNYNVDTARPEWFILQALPVPPVTVRPSIILE- 234

Query: 328 SAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPP 507
           S   +EDDLT K+ +I+ +N+ L +S   G P +++ D  + LQ     + +++ + +P 
Sbjct: 235 SGIRSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHCTTYFDNEVSGIPQ 294

Query: 508 L-ASTAKPLRGISQRL 552
               + +PL+ ++QRL
Sbjct: 295 AHHRSGRPLKTLTQRL 310

[245][TOP]
>UniRef100_B3T303 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
           HF4000_ANIW93I24 RepID=B3T303_9ARCH
          Length = 1264

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 40/129 (31%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
 Frame = +1

Query: 169 LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILRYLPVPPLCIRPTVCSDPSAGSTED 348
           L P+     F  +T +D+ L++      RPE  IL+ LPVPP+ +RP++  + S   +ED
Sbjct: 178 LLPITIRERFLQITDDDLELVNYNTATARPEWFILQALPVPPVTVRPSIILE-SGIRSED 236

Query: 349 DLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWLQVEAARFMNSDATNLPPL-ASTAK 525
           DLT K+ +I+ +N+ L +S   G P +++ D  + LQ     + +++ + +P     + +
Sbjct: 237 DLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHCTTYFDNEVSGIPQAHHRSGR 296

Query: 526 PLRGISQRL 552
           PL+ ++QRL
Sbjct: 297 PLKTLTQRL 305

[246][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
           (RNA polymerase II subunit B1) (DNA-directed RNA
           polymerase II subunit A) (DNA-directed RNA polymerase
           III largest subunit) n=1 Tax=Equus caballus
           RepID=UPI0001796DD3
          Length = 1834

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +R+  +L      V +D       L+P R   +F+ ++ E+  ++ M     RPE +I+ 
Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            LPVPPL +RP V    SA   +DDLT KL +IV +N  L ++   G  A ++ +  + L
Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310

Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           Q   A  ++++   LP  +  + +PL+ + QRL
Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343

[247][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
           isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
          Length = 1970

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +R+  +L      V +D       L+P R   +F+ ++ E+  ++ M     RPE +I+ 
Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            LPVPPL +RP V    SA   +DDLT KL +IV +N  L ++   G  A ++ +  + L
Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310

Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           Q   A  ++++   LP  +  + +PL+ + QRL
Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343

[248][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest
           subunit (RPB1) n=1 Tax=Pan troglodytes
           RepID=UPI0000E24648
          Length = 1913

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +R+  +L      V +D       L+P R   +F+ ++ E+  ++ M     RPE +I+ 
Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            LPVPPL +RP V    SA   +DDLT KL +IV +N  L ++   G  A ++ +  + L
Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310

Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           Q   A  ++++   LP  +  + +PL+ + QRL
Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343

[249][TOP]
>UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest
           subunit (RPB1) n=1 Tax=Macaca mulatta
           RepID=UPI0000D9E16B
          Length = 1193

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +R+  +L      V +D       L+P R   +F+ ++ E+  ++ M     RPE +I+ 
Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            LPVPPL +RP V    SA   +DDLT KL +IV +N  L ++   G  A ++ +  + L
Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310

Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           Q   A  ++++   LP  +  + +PL+ + QRL
Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343

[250][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest
           subunit (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
           RepID=UPI00005A0B2C
          Length = 1888

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
 Frame = +1

Query: 118 KRNNADLERHLSRVGDD-------LNPLRTLALFEAMTAEDVALIDMRAVGGRPERLILR 276
           +R+  +L      V +D       L+P R   +F+ ++ E+  ++ M     RPE +I+ 
Sbjct: 192 RRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVT 251

Query: 277 YLPVPPLCIRPTVCSDPSAGSTEDDLTMKLTEIVHMNEALAKSINLGGPAVLLMDGXEWL 456
            LPVPPL +RP V    SA   +DDLT KL +IV +N  L ++   G  A ++ +  + L
Sbjct: 252 VLPVPPLSVRPAVVMQGSA-RNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLL 310

Query: 457 QVEAARFMNSDATNLP-PLASTAKPLRGISQRL 552
           Q   A  ++++   LP  +  + +PL+ + QRL
Sbjct: 311 QFHVATMVDNELPGLPRAMQKSGRPLKSLKQRL 343