AU191016 ( PFL010d06_r )

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[1][TOP]
>UniRef100_C8XBK0 Transcriptional regulator, Fis family n=1 Tax=Nakamurella
           multipartita DSM 44233 RepID=C8XBK0_9ACTO
          Length = 245

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 52/144 (36%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
 Frame = -3

Query: 467 PTARPAAQRGPSRHRRRPRRTRRRH-HRGAPRTAPTPCGGWGRGALGR-----TPPRSHG 306
           P+ R   + GP     RPRR  +RH  R  P TA     G    + GR     TP  S G
Sbjct: 15  PSPRSPERAGPGPRLLRPRRDPQRHPRRRRPTTAAARRSGPAAPSTGRARWLWTPTGSRG 74

Query: 305 ---------PPSRP--GSRRRSCP*-------APSPGRP----GWLPAGRRGGRCRWQWR 192
                    PPSRP  G+ RR  P        A  PG+P    G +P+  R GR R   R
Sbjct: 75  RRAAPSPCLPPSRPPRGTARRPIPSGRPIRASATGPGQPATGRGAVPSRHRPGRRRIGGR 134

Query: 191 RQPGWRQAYPPGGRHQRAGRPRAW 120
           R+PG+R  + PG R  R G  R W
Sbjct: 135 RRPGYRHPHRPGPR--RPGPHRLW 156

[2][TOP]
>UniRef100_C6NW58 Putative ATP-dependent RNA helicase n=1 Tax=Acidithiobacillus
           caldus ATCC 51756 RepID=C6NW58_9GAMM
          Length = 386

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 42/114 (36%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
 Frame = -3

Query: 485 RPCRGTPTARPAAQRGPSRHRRRPRRTRRRHHRGAPRTAPTPCGGWGRGALGRTPPRSHG 306
           RP RG     P  +   S  RR  R T RR  R   R    P GG      GR P  S G
Sbjct: 113 RPTRGRSAGSPRRRPTGSTGRRPTRPTGRRPTRPTGRRPTRPTGGRPTRPTGRRPTGSTG 172

Query: 305 P-PSRPGSRRRSCP*APSPGRPGWLPAGRRGGRCRWQWRRQ---------PGWR 174
             P+RP  RR + P    P RP  LP  R G   RW+ RR+         P WR
Sbjct: 173 RRPTRPTGRRPTRPTGRRPARPTGLPRRRWGRGTRWRRRRRCHPQRTEKGPRWR 226

[3][TOP]
>UniRef100_C4RG10 ATPase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RG10_9ACTO
          Length = 1011

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 49/115 (42%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
 Frame = -3

Query: 467 PTARPAAQRGPSRHRRRPRRTRRRHHRGAPR--TAPTPCGGWGRGALGRTPPRSHGPPSR 294
           P+AR  A+RGP R  R   R  RR   G PR   A  P G  GR A GR   R+H  P R
Sbjct: 150 PSARRDARRGP-RALRGGGRGDRRGSPGRPRPPAAAGPGGAGGRPAAGRGTRRAH--PPR 206

Query: 293 PGSRRRSCP*APSPGRPGWLPAGRRGGRCRWQWRRQPGWRQAYPPGGRHQRAGRP 129
           P   RR    A    R G  PA + G   R +  R+PG R+A   G R +RAGRP
Sbjct: 207 PAHDRRP---AGDGARRGGGPAAQAGRPAR-RGTRRPGPRRAAGRGRRGRRAGRP 257

[4][TOP]
>UniRef100_D0EL85 Truncated bell-like homeodomain protein n=1 Tax=Hordeum vulgare
           RepID=D0EL85_HORVU
          Length = 238

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 55/163 (33%), Positives = 63/163 (38%), Gaps = 14/163 (8%)
 Frame = +3

Query: 18  DLAAITPPPTRSAHDRY----------PSDAHRTPPPLEPWH-VQPRSRAP---CSLVAP 155
           D AA   PPT  A              PS   R PPP  P H   PR R     CS  +P
Sbjct: 56  DAAAEDSPPTPLARTTSTTRPGRGLPRPSTPTRPPPP--PTHRTAPRCRRASSWCSTGSP 113

Query: 156 SWRVRLPPSRLAAPLPPAATSTPPCGQPPRTSR*WCLRAAAAATARPTWWPV*PRRGATK 335
             R     SR +      + S PP   PPR  R      +  A  R    P  PR     
Sbjct: 114 PSRSPRSSSRTSPRTTSRSPSPPPRPIPPRRPRRPGSSRSREAPGRAVPSPATPR----- 168

Query: 336 CASSPPSAWRRRGAWRAAVVAAARPTRPTAVAGWTSLGCRACS 464
           C+  P S+ RRRG WR +    ARP  PTA +       RACS
Sbjct: 169 CSGDPSSSSRRRGCWRRSATWEARPRTPTAAS-----RTRACS 206

[5][TOP]
>UniRef100_UPI0000F2EC68 PREDICTED: hypothetical protein n=1 Tax=Monodelphis domestica
           RepID=UPI0000F2EC68
          Length = 287

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 51/145 (35%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
 Frame = -3

Query: 485 RPCRGTPTARPAAQ-RGPS------RHRRRPRRTRRRHHRGAPRTAPTPCGGWGRGALG- 330
           R C G  T  P  + RG +         + PRR   RH  G P  + TP  G+ RG    
Sbjct: 45  RTCSGGGTTAPGRRDRGQALRAAFLSRSKTPRRGGTRHAHGPPTASGTP-PGYRRGRAAP 103

Query: 329 ----RTPPRSHGPPSR--PGSRRRSCP*APSPGRPGWLPAGRRGGRCRWQWRRQPGWRQA 168
               RTPP    PP R  PG+  R  P AP+ GRP       R  R R   RR P    A
Sbjct: 104 EGTHRTPPGRPQPPRRLEPGTGERHRPKAPAVGRPP-PDTQPRSRRARGGHRRPPLTVGA 162

Query: 167 YPPGGRHQRAGRPRAWLHVPWFEGG 93
             P  R  R+G P  W    WF  G
Sbjct: 163 ATPPWRPSRSGDPCVWAGA-WFPSG 186

[6][TOP]
>UniRef100_UPI0000F2EBF1 PREDICTED: hypothetical protein n=1 Tax=Monodelphis domestica
           RepID=UPI0000F2EBF1
          Length = 287

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 51/145 (35%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
 Frame = -3

Query: 485 RPCRGTPTARPAAQ-RGPS------RHRRRPRRTRRRHHRGAPRTAPTPCGGWGRGALG- 330
           R C G  T  P  + RG +         + PRR   RH  G P  + TP  G+ RG    
Sbjct: 45  RTCSGGGTTAPGRRDRGQALRAAFLSRSKTPRRGGTRHAHGPPTASGTP-PGYRRGRAAP 103

Query: 329 ----RTPPRSHGPPSR--PGSRRRSCP*APSPGRPGWLPAGRRGGRCRWQWRRQPGWRQA 168
               RTPP    PP R  PG+  R  P AP+ GRP       R  R R   RR P    A
Sbjct: 104 EGTHRTPPGRPQPPRRLEPGTGERHRPKAPAVGRPP-PDTQPRSRRARGGHRRPPLTVGA 162

Query: 167 YPPGGRHQRAGRPRAWLHVPWFEGG 93
             P  R  R+G P  W    WF  G
Sbjct: 163 ATPPWRPSRSGDPCVWAGA-WFPSG 186

[7][TOP]
>UniRef100_A7HI44 LigA n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HI44_ANADF
          Length = 535

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 46/127 (36%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
 Frame = -3

Query: 461 ARPAAQRGPSRHRRRPRRTRRRHHRGAPRTAPTPCGGWGRGALGRTPPRSHGPPSRPGSR 282
           +R  A R P R RR P R R R  RGA      P G  GRGA GR   R   P  R G  
Sbjct: 3   SRAGADRHPERDRRAPGRRRHRRGRGAAPRGGGPAGPAGRGAAGRLGRRRRRPAGRGGGD 62

Query: 281 RRSCP----*APSPG-----------RPGWLPAGRRGGRCRWQWRRQPGWRQAYPPGGRH 147
           RR+ P     A + G           RP   PAG  G        R  G R+   PGG  
Sbjct: 63  RRARPPRARRAAAAGGAPRAAAADRLRPARRPAGPDGA------ARHAGARRGPRPGGGG 116

Query: 146 QRAGRPR 126
           +RA   R
Sbjct: 117 RRAAGRR 123

[8][TOP]
>UniRef100_Q1DG75 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622
           RepID=Q1DG75_MYXXD
          Length = 513

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 44/120 (36%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
 Frame = -3

Query: 476 RGTPTARPAAQRGPSRHRRRPRRTRRRHHRGAPRTAPTPCGGWGRGALGRTPPRSHGPPS 297
           RG P AR A +R P+ HRR P R  R   R AP   P P  G  +G +G  PP +  P  
Sbjct: 40  RGAP-ARHAPRRSPA-HRRTPDRGPRHARRPAPVRGPRPVAGTKQGGVGSLPPPASRPAR 97

Query: 296 RPGSRRRSCP*APSPGRPGWLPAGRRGGRCRWQWRRQPGWRQAYPPGGRH----QRAGRP 129
               RRR+ P  P P R G  P   R  R R    R+     A+    RH    +R G P
Sbjct: 98  PAAPRRRARPACP-PVRTG--PRSPRVSRSRAAGGRRASGSAAFACAPRHRACLERHGSP 154

[9][TOP]
>UniRef100_C4REF4 Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC
           39149 RepID=C4REF4_9ACTO
          Length = 341

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 49/125 (39%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
 Frame = -3

Query: 464 TARPAAQRGPSRHRRRPRRTRR------RHHRGAPRTAPTPCGGWGRGALGRTPPRSHGP 303
           TA P + R P      PR  RR         RG  RT      GW R + GR PPR    
Sbjct: 62  TAWPGSARLPPTGTTSPRPGRRWPGGPTGRRRGGARTGR----GWPRRSPGRRPPRR--- 114

Query: 302 PSRPGSRRRSCP*APSPGRPGWLPAGRRGGR--CRWQWRRQP----GWRQAYPPGGRHQR 141
           PSR GSR  S P       PGWLP   R GR   RW   R P      R+A     R QR
Sbjct: 115 PSRSGSRASSPP-------PGWLPGTTRCGRPPSRWSAPRPPYRRLVERRAQAAELREQR 167

Query: 140 AGRPR 126
           AG  R
Sbjct: 168 AGHER 172