AU188171 ( PF022d06_r )

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[1][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
            RepID=O04142_PORYE
          Length = 1685

 Score =  351 bits (901), Expect = 2e-95
 Identities = 172/175 (98%), Positives = 172/175 (98%)
 Frame = +2

Query: 2    INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL GG
Sbjct: 1511 INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLCGG 1570

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
            PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA
Sbjct: 1571 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 1630

Query: 362  SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
            SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP SPNYAAASSPAYQPP RR
Sbjct: 1631 SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPSSPNYAAASSPAYQPPPRR 1685

[2][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score =  115 bits (288), Expect = 2e-24
 Identities = 73/175 (41%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTP--GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S ++S +  A   +  + +P  G  P    +P  SP+SPGY+ +SP +     G      
Sbjct: 1510 SYLLSPSLRASPLSDAQFSPYVGNMPFSPSSPGYSPSSPGYSPLSPGYSPTSPGYSPTSP 1569

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
            G Y+P SP Y  TSPG  YSP++P+ + +SPGYSP    YSPTSPS         P +  
Sbjct: 1570 G-YSPTSPGYSPTSPG--YSPTSPSYSPTSPGYSPTSPSYSPTSPSYAPTSPSYSPTSPS 1626

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP+Y+      +  +  YSP+SPAYSP SP+Y A +SPAY P S
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY-APTSPAYSPTS 1680

 Score =  110 bits (275), Expect = 6e-23
 Identities = 71/162 (43%), Positives = 92/162 (56%), Gaps = 12/162 (7%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +PG SP    +P  SP SPGY+  SP +        +  + +YAP SP+Y  TSP   YS
Sbjct: 1582 SPGYSPT---SPSYSPTSPGYSPTSPSY--------SPTSPSYAPTSPSYSPTSPS--YS 1628

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA------- 406
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSPAY+       
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPAYSPTSPSYAPTSPAYSPTSPSYS 1684

Query: 407  --RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
               PG    + + YSPSSP+YSP SP+Y + +SPAY P S R
Sbjct: 1685 PTSPGYSPTSPS-YSPSSPSYSPTSPSY-SPTSPAYSPTSPR 1724

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 61/139 (43%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SPAY  TSP   Y+
Sbjct: 1624 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPAYSPTSPS--YA 1670

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++PA + +SP YSP   GYSPTSPS      P++   SP SP Y PTSPAY+       
Sbjct: 1671 PTSPAYSPTSPSYSPTSPGYSPTSPSYS----PSSPSYSPTSPSYSPTSPAYS------P 1720

Query: 428  AANVYSPSSPAYSPFSPNY 484
             +  YSPSSP+YSP SP+Y
Sbjct: 1721 TSPRYSPSSPSYSPTSPSY 1739

[3][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
            RepID=A7S8F9_NEMVE
          Length = 1929

 Score =  114 bits (286), Expect = 3e-24
 Identities = 75/185 (40%), Positives = 103/185 (55%), Gaps = 16/185 (8%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPG------RMTPGR----SPAGRFTPRMSPASPGYAAMSPRFG 163
            ASFSP  +S DA+G +  G        TPG      P   + P  + ASPGY+  SP F 
Sbjct: 1542 ASFSPSAAS-DASGMSPGGFSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAF- 1599

Query: 164  GGLGGGPA--GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSV 328
              +   P+    + +Y+P SP Y  +SP  GYSP++P+ + +SP Y   SP YSPTSPS 
Sbjct: 1600 --MPSSPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSY 1657

Query: 329  GARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPA 505
                 P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+
Sbjct: 1658 ----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPS 1712

Query: 506  YQPPS 520
            Y P S
Sbjct: 1713 YSPTS 1717

 Score =  108 bits (270), Expect = 2e-22
 Identities = 71/196 (36%), Positives = 98/196 (50%), Gaps = 30/196 (15%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            SP+     +    +P   +PG SP+       +P MSPASP Y+  SP      G  P+ 
Sbjct: 1571 SPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSPSMSPASPSYSPTSP------GYSPSS 1624

Query: 191  GAGAYAPASPAYMATSPGMG-------------------YSPSTPALAVSSPGYSP---G 304
             +  Y+PASP+Y  TSP                      YSP++P+ + +SP YSP    
Sbjct: 1625 PSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1684

Query: 305  YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPF 472
            YSPTSPS         P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP 
Sbjct: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1744

Query: 473  SPNYAAASSPAYQPPS 520
            SP+Y + +SP+Y P S
Sbjct: 1745 SPSY-SPTSPSYSPTS 1759

 Score =  106 bits (264), Expect = 1e-21
 Identities = 73/194 (37%), Positives = 97/194 (50%), Gaps = 28/194 (14%)
 Frame = +2

Query: 23   SPIMSSADAAGRAT-----PGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLG 175
            SP MS A  +   T     P   + G SPA       +P  SP SP Y+  SP +     
Sbjct: 1603 SPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSP-TS 1661

Query: 176  GGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVG 331
               +  + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS  
Sbjct: 1662 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1721

Query: 332  ARG----------GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSP 478
                          P +   SP SP Y PTSP+Y+      + ++  YSPSSP+YSP SP
Sbjct: 1722 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPQSP 1781

Query: 479  NYAAASSPAYQPPS 520
            +YA+ SSP Y P S
Sbjct: 1782 SYASPSSPKYSPAS 1795

 Score =  102 bits (255), Expect = 1e-20
 Identities = 68/179 (37%), Positives = 98/179 (54%), Gaps = 6/179 (3%)
 Frame = +2

Query: 2    INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASP--GYAAMSPRFGGGLG 175
            I + A+ SP  S +  A   +   M+P        +P  SP+SP  GY+  SP +     
Sbjct: 1582 IPSPAAASPGYSPSSPAFMPSSPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSY----- 1636

Query: 176  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGP 346
               +  + +Y+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P
Sbjct: 1637 ---SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SP 1687

Query: 347  AAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1688 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1745

 Score =  102 bits (253), Expect = 2e-20
 Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP+SP Y+  SP +        +  +  Y+PASP+Y  TSP   YS
Sbjct: 1752 SPSYSPT---SPSYSPSSPSYSPSSPSYSPQSPSYASPSSPKYSPASPSYSPTSP--KYS 1806

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P  + +SP YSP    YSPTSPS      PA+   SP SP Y P+SP+Y+       
Sbjct: 1807 PTSPNYSPASPSYSPSSPKYSPTSPSY----TPASPSYSPASPSYSPSSPSYSPSSPRYT 1862

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SPNY + ++P+Y P S
Sbjct: 1863 PTSPQYSPTSPKYSPASPNY-SPTTPSYTPMS 1893

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/159 (40%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1703 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1749

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSP+SPS   +   +  YASP SP Y P SP+Y+      +
Sbjct: 1750 PTSPSYSPTSPSYSPSSPSYSPSSPSYSPQ---SPSYASPSSPKYSPASPSYSPTSPKYS 1806

Query: 428  --------AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                    A+  YSPSSP YSP SP+Y  A SP+Y P S
Sbjct: 1807 PTSPNYSPASPSYSPSSPKYSPTSPSYTPA-SPSYSPAS 1844

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 72/195 (36%), Positives = 99/195 (50%), Gaps = 37/195 (18%)
 Frame = +2

Query: 47   AAGRATPGRMTPGRSPAGRFTPRMSPASPGYA-AMSPRFGGGLGGGPAGGAGAYAPA--- 214
            AAG  +P  M+P      + TP    A+P Y  A SP    G+G G   GA +++P+   
Sbjct: 1503 AAG--SPSAMSP------QMTPWNMGATPAYMEAWSP----GMGSGMTPGAASFSPSAAS 1550

Query: 215  ----------SPAYMATSPGM-------------------GYSPSTPALAVSSPGY---S 298
                      SP++M+ +PG                    GYSPS+PA   SSP     S
Sbjct: 1551 DASGMSPGGFSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSPSMSPAS 1610

Query: 299  PGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFS 475
            P YSPTSP   +   P++GY SP SP Y PTSP+Y+      +  +  YSP+SP+YSP S
Sbjct: 1611 PSYSPTSPGY-SPSSPSSGY-SPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1668

Query: 476  PNYAAASSPAYQPPS 520
            P+Y + +SP+Y P S
Sbjct: 1669 PSY-SPTSPSYSPTS 1682

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 48/130 (36%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S A  +   T  + +P        +P  SP+SP Y+  SP               +
Sbjct: 1788 SPKYSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKYSPTSP---------------S 1832

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
            Y PASP+Y   SP   YSPS+P+ + SSP Y   SP YSPTSP             SP S
Sbjct: 1833 YTPASPSYSPASP--SYSPSSPSYSPSSPRYTPTSPQYSPTSPKY-----------SPAS 1879

Query: 374  PGYVPTSPAY 403
            P Y PT+P+Y
Sbjct: 1880 PNYSPTTPSY 1889

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGR----FTPRMSPASPGYAAMSPRFGGGLG 175
            ++ S+SP   S  +         +P  SP        +P  SPASP Y+  SP++     
Sbjct: 1772 SSPSYSPQSPSYASPSSPKYSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKYSP-TS 1830

Query: 176  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------GYSPTSPS 325
                  + +Y+PASP+Y  +SP   YSPS+P    +SP YSP           YSPT+PS
Sbjct: 1831 PSYTPASPSYSPASPSYSPSSPS--YSPSSPRYTPTSPQYSPTSPKYSPASPNYSPTTPS 1888

Query: 326  VGARGG 343
                 G
Sbjct: 1889 YTPMSG 1894

[4][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 2 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270E9
          Length = 2014

 Score =  114 bits (285), Expect = 4e-24
 Identities = 76/185 (41%), Positives = 100/185 (54%), Gaps = 16/185 (8%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRF-------------TPRMSPASPGYAAMSP 154
            ASFSP   S DA+G +  G  +P  SP                 +P MSP+SPGY+  SP
Sbjct: 1541 ASFSPSAHS-DASGFSPAGGFSPAWSPQDSIPSYSPNSPAFNPQSPAMSPSSPGYSPTSP 1599

Query: 155  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPS 325
             +     G        Y+P SP+Y  TSPG  YSP++P+ + +SP YSP    YSPTSPS
Sbjct: 1600 LYSPTSPG--------YSPTSPSYSPTSPG--YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1649

Query: 326  VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                  P +   SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+
Sbjct: 1650 Y----SPTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPS 1698

Query: 506  YQPPS 520
            Y P S
Sbjct: 1699 YSPTS 1703

 Score =  104 bits (260), Expect = 3e-21
 Identities = 65/152 (42%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +P+ SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1745 SPSYSPS---SPQYSPTSPAYSPQSPSYSPS-SPSYSPTSPKYSPTSPKYSPTSPK--YS 1798

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + SSP YSP    YSPTSP+      P +   SP SP Y PTSPAY+      +
Sbjct: 1799 PTSPSYSPSSPSYSPSSPNYSPTSPTYS----PTSPTYSPTSPAYSPTSPAYSPTSPAYS 1854

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              + VYSP+SPAYSP SP Y + +SP Y P S
Sbjct: 1855 PTSPVYSPTSPAYSPTSPKY-SPTSPKYSPTS 1885

 Score =  103 bits (258), Expect = 6e-21
 Identities = 69/179 (38%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SPI S    +   T    +P        +P+ SP SP Y+  SP +        +  +  
Sbjct: 1703 SPIYSPTSPSYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPSY--------SPSSPQ 1754

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYAS 364
            Y+P SPAY   SP   YSPS+P+ + +SP Y   SP YSPTSP          P++   S
Sbjct: 1755 YSPTSPAYSPQSP--SYSPSSPSYSPTSPKYSPTSPKYSPTSPKYSPTSPSYSPSSPSYS 1812

Query: 365  PQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
            P SP Y PTSP Y+    T    +  YSP+SPAYSP SP Y+  S      SPAY P S
Sbjct: 1813 PSSPNYSPTSPTYSPTSPTYSPTSPAYSPTSPAYSPTSPAYSPTSPVYSPTSPAYSPTS 1871

 Score =  100 bits (248), Expect = 8e-20
 Identities = 63/155 (40%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1682 SPSYSPT---SPSYSPTSPSYSPTSPIYSP-TSPSYSPTSPSYSPTSPSYSPTSPK--YS 1735

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSP+   +     P++   SP SP Y PTSP Y+    
Sbjct: 1736 PTSPSYSPTSPSYSPSSPQYSPTSPAYSPQSPSYSPSSPSYSPTSPKYSPTSPKYSPTSP 1795

Query: 419  VVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  +  YSPSSP+YSP SPNY + +SP Y P S
Sbjct: 1796 KYSPTSPSYSPSSPSYSPSSPNY-SPTSPTYSPTS 1829

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 63/159 (39%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + AY+P SP Y  TSP   YS
Sbjct: 1836 SPAYSPT---SPAYSPTSPAYSPTSPVY--------SPTSPAYSPTSPKYSPTSPK--YS 1882

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P  + +SP YSP   GYSPTSP          P     SP SP Y P SP Y+ P T
Sbjct: 1883 PTSPIYSPTSPAYSPTSTGYSPTSPEYSPSSPKYSPTTPQYSPTSPKYSPASPTYS-PST 1941

Query: 419  V----VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
                 V + N YSP  P YSP +P Y+   +P Y P  R
Sbjct: 1942 PTDKSVGSIN-YSPLEPDYSPGTPTYSPDGTPTYSPDGR 1979

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 56/164 (34%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP+ S    A   T  + +P        +P+ SP SP Y+  SP +     G        
Sbjct: 1857 SPVYSPTSPAYSPTSPKYSPT-------SPKYSPTSPIYSPTSPAYSPTSTG-------- 1901

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  +SP   YSP+TP  + +SP YSP    YSP++P+  + G  +  Y SP  
Sbjct: 1902 YSPTSPEYSPSSPK--YSPTTPQYSPTSPKYSPASPTYSPSTPTDKSVG--SINY-SPLE 1956

Query: 374  PGYVPTSPAYARPGTV-----------VAAANV----YSPSSPA 460
            P Y P +P Y+  GT             AA N+    YSPSSP+
Sbjct: 1957 PDYSPGTPTYSPDGTPTYSPDGRGFSGTAAKNISPMDYSPSSPS 2000

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 29/149 (19%)
 Frame = +2

Query: 161  GGGLGGGPAGGAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR 337
            GG   G  A  + A +P  +P     +PG G   S PAL       +  +SP++ S  + 
Sbjct: 1495 GGVFFGSAASPSNAMSPQMTPWNQGHTPGYGDGWS-PALGSGMTPGAASFSPSAHSDASG 1553

Query: 338  GGPAAGYA--------------------------SPQSPGYVPTSPAYA--RPGTVVAAA 433
              PA G++                          SP SPGY PTSP Y+   PG    + 
Sbjct: 1554 FSPAGGFSPAWSPQDSIPSYSPNSPAFNPQSPAMSPSSPGYSPTSPLYSPTSPGYSPTSP 1613

Query: 434  NVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            + YSP+SP YSP SP+Y + +SP+Y P S
Sbjct: 1614 S-YSPTSPGYSPTSPSY-SPTSPSYSPTS 1640

[5][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9SXC0_RICCO
          Length = 1855

 Score =  114 bits (285), Expect = 4e-24
 Identities = 73/174 (41%), Positives = 98/174 (56%), Gaps = 5/174 (2%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A FSP +S    +   +PG    +PG SP+   +P  SP SPGY+  SP +      G +
Sbjct: 1524 AQFSPYVSGMPFSPTLSPGYSPSSPGYSPS---SPGYSPTSPGYSPTSPGYSP-TSPGYS 1579

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
              +  Y+P+SP Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +  
Sbjct: 1580 PTSPTYSPSSPGYSPTSPA--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPS 1633

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP Y+        +  YSP+SPAYSP SP+Y + +SP+Y P S
Sbjct: 1634 YSPTSPSYSPTSPVYS------PTSPAYSPTSPAYSPTSPSY-SPTSPSYSPTS 1680

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 68/167 (40%), Positives = 88/167 (52%), Gaps = 19/167 (11%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + AY+P SPAY  TSP   YS
Sbjct: 1624 SPSYSPT---SPSYSPTSPSYSPTSPVY--------SPTSPAYSPTSPAYSPTSPS--YS 1670

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVG----ARGGPAAGYA------SPQSPGYVPTSP 397
            P++P+ + +SP YSP    YSPTSPS      A    + GY+      SP SP Y PTSP
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSP 1730

Query: 398  AYARPGTVVAAANVYSPSSP------AYSPFSPNYAAASSPAYQPPS 520
            +Y       + +  YSPSSP       YSP SPNY + +SP+Y P S
Sbjct: 1731 SYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNY-SPTSPSYSPTS 1776

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 67/182 (36%), Positives = 88/182 (48%), Gaps = 16/182 (8%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP+ S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1645 SPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1696

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------------GYSPTSPSVGA 334
            Y+P SPAY  TSP  GYSP++P+ + +SP YSP                 YSP+SP    
Sbjct: 1697 YSPTSPAYSPTSP--GYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSP---- 1750

Query: 335  RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            R  P++ Y SP SP Y PTSP+Y+        +  YSPSSP YSP SP Y +   P Y P
Sbjct: 1751 RLSPSSPY-SPTSPNYSPTSPSYS------PTSPSYSPSSPTYSPSSP-YNSGVGPDYSP 1802

Query: 515  PS 520
             S
Sbjct: 1803 SS 1804

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 65/158 (41%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
 Frame = +2

Query: 74   MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA--GAYAPASPAYMATSPGM 247
            MTP RSP       ++P   G  + S      L   P   A    Y    P     SPG 
Sbjct: 1489 MTPARSPVS-----VTPYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPFSPTLSPG- 1542

Query: 248  GYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYAR 409
             YSPS+P  + SSPGY   SPGYSPTSP          P +   SP SPGY PTSPAY+ 
Sbjct: 1543 -YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1601

Query: 410  PGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                 +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1602 TSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1638

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 63/154 (40%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS----PG 244
            +P  SP    +P  SP SPGY+  SP +        +  + +Y+P SP+Y   S    P 
Sbjct: 1694 SPSYSPT---SPAYSPTSPGYSPTSPSY--------SPTSPSYSPTSPSYNPQSAKYSPS 1742

Query: 245  MGYSPSTPALAVSSP--GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
            + YSPS+P L+ SSP    SP YSPTSPS      P +   SP SP Y P+SP  +  G 
Sbjct: 1743 LAYSPSSPRLSPSSPYSPTSPNYSPTSPSYS----PTSPSYSPSSPTYSPSSPYNSGVGP 1798

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                   YSPSSP YSP S  Y + S+P Y P S
Sbjct: 1799 ------DYSPSSPQYSP-SAGY-SPSAPGYSPSS 1824

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S      A     +PG SP    +P  SP SP Y+  SP +           +
Sbjct: 1689 SYSPTSPSYSPTSPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPSYNPQ--SAKYSPS 1742

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
             AY+P+SP    +SP   YSP++P  + +SP YSP    YSP+SP+      P++ Y S 
Sbjct: 1743 LAYSPSSPRLSPSSP---YSPTSPNYSPTSPSYSPTSPSYSPSSPTY----SPSSPYNSG 1795

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
              P Y P+SP Y       + +  YSPS+P YSP S +    +S
Sbjct: 1796 VGPDYSPSSPQY-------SPSAGYSPSAPGYSPSSTSQYTQTS 1832

[6][TOP]
>UniRef100_O77165 DNA-directed RNA polymerase (Fragment) n=1 Tax=Breviata anathema
            RepID=O77165_9EUKA
          Length = 1690

 Score =  114 bits (285), Expect = 4e-24
 Identities = 77/171 (45%), Positives = 97/171 (56%), Gaps = 4/171 (2%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            + P+  S  AAG +     +P  SPA   +P  SPASP Y+  SP +       PA  + 
Sbjct: 1494 YIPVPGSPAAAGYSPA---SPAYSPA---SPAYSPASPAYSPASPAYS------PA--SP 1539

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
            AY+PASPAY   SP   YSP++PA + +SP Y   SP YSP SP+      PA+   SP 
Sbjct: 1540 AYSPASPAYSPASPA--YSPASPAYSPASPAYSPASPAYSPASPAY----SPASPAYSPA 1593

Query: 371  SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y P SPAY+      + A+  YSP+SPAYSP SP Y+ A SPAY P S
Sbjct: 1594 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPAS 1643

 Score =  113 bits (283), Expect = 7e-24
 Identities = 79/181 (43%), Positives = 98/181 (54%), Gaps = 10/181 (5%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A A +SP   +   A  A     +P  SPA   +P  SPASP Y+  SP +       PA
Sbjct: 1502 AAAGYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA 1551

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
              + AY+PASPAY   SP   YSP++PA + +SP YSP    YSP SP+      PA+  
Sbjct: 1552 --SPAYSPASPAYSPASPA--YSPASPAYSPASPAYSPASPAYSPASPAYS----PASPA 1603

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y P SPAY+      + A+  YSP+SPAYSP SP Y+ AS      SPAY P 
Sbjct: 1604 YSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYGPASPAYSPA 1663

Query: 518  S 520
            S
Sbjct: 1664 S 1664

 Score =  111 bits (277), Expect = 4e-23
 Identities = 76/173 (43%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A+ ++SP   +   A  A     +P  SPA   +P  SPASP Y+  SP +       PA
Sbjct: 1530 ASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA 1579

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
              + AY+PASPAY   SP   YSP++PA + +SP YSP    YSP SP+      PA+  
Sbjct: 1580 --SPAYSPASPAYSPASPA--YSPASPAYSPASPAYSPASPAYSPASPAYS----PASPA 1631

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
             SP SP Y P SPAY+        A+  YSP+SPAYSP SP Y+ A SPAY P
Sbjct: 1632 YSPASPAYSPASPAYSPASPAYGPASPAYSPASPAYSPASPAYSPA-SPAYDP 1683

 Score =  106 bits (264), Expect = 1e-21
 Identities = 71/171 (41%), Positives = 90/171 (52%), Gaps = 4/171 (2%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            FSP ++ + + G      M  G  P         P+SPG     P  G     G +  + 
Sbjct: 1460 FSPSVTMSPSGGFGMGMGMGMGDIPV--------PSSPGPFGYIPVPGSPAAAGYSPASP 1511

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
            AY+PASPAY   SP   YSP++PA + +SP Y   SP YSP SP+      PA+   SP 
Sbjct: 1512 AYSPASPAYSPASP--AYSPASPAYSPASPAYSPASPAYSPASPAY----SPASPAYSPA 1565

Query: 371  SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y P SPAY+      + A+  YSP+SPAYSP SP Y+ A SPAY P S
Sbjct: 1566 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA-SPAYSPAS 1615

 Score =  103 bits (257), Expect = 7e-21
 Identities = 71/166 (42%), Positives = 90/166 (54%), Gaps = 4/166 (2%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A+ ++SP   +   A  A     +P  SPA   +P  SPASP Y+  SP +       PA
Sbjct: 1537 ASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA 1586

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
              + AY+PASPAY   SP   YSP++PA + +SP YSP    YSP SP+      PA+  
Sbjct: 1587 --SPAYSPASPAYSPASPA--YSPASPAYSPASPAYSPASPAYSPASPAYS----PASPA 1638

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAA 493
             SP SP Y P SPAY       + A+  YSP+SPAYSP SP Y  A
Sbjct: 1639 YSPASPAYSPASPAYGPASPAYSPASPAYSPASPAYSPASPAYDPA 1684

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 65/160 (40%), Positives = 83/160 (51%), Gaps = 3/160 (1%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A+ ++SP   +   A  A     +P  SPA   +P  SPASP Y+  SP +       PA
Sbjct: 1558 ASPAYSPASPAYSPASPAY-SPASPAYSPA---SPAYSPASPAYSPASPAYS------PA 1607

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
              + AY+PASPAY   SP   YSP++PA + +SP Y   SP YSP SP+ G         
Sbjct: 1608 --SPAYSPASPAYSPASPA--YSPASPAYSPASPAYSPASPAYSPASPAYG--------- 1654

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
              P SP Y P SPAY+       A+  YSP+SPAY P  P
Sbjct: 1655 --PASPAYSPASPAYS------PASPAYSPASPAYDPAEP 1686

[7][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
            RepID=B0XAQ9_CULQU
          Length = 1874

 Score =  114 bits (285), Expect = 4e-24
 Identities = 74/171 (43%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP+  S  + G +    M+P    +   +P  SP+SP YAA SP   GG   G +  +
Sbjct: 1531 SWSPMPGSPSSPGPS----MSPYFPSSPSASPSYSPSSPNYAAASP---GGASPGYSPTS 1583

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
             +Y+P SP Y  TSP   YSP++P  + +SP Y   SP YSPTSP       P A YA P
Sbjct: 1584 PSYSPTSPNYSPTSP--RYSPTSPNYSPTSPNYSPTSPSYSPTSPLY----SPTATYA-P 1636

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP Y PTSP+Y+        +  YSP+SPAYSP SP+Y + SSP+Y P S
Sbjct: 1637 SSPAYSPTSPSYSPTSPYSPTSPSYSPTSPAYSPTSPSY-SPSSPSYSPTS 1686

 Score =  107 bits (266), Expect = 7e-22
 Identities = 73/179 (40%), Positives = 94/179 (52%), Gaps = 11/179 (6%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SFSP   S DA+G +      PG           SP+SPG  +MSP F       P+   
Sbjct: 1516 SFSPSAQS-DASGMSPSWSPMPG-----------SPSSPG-PSMSPYFPSSPSASPS--- 1559

Query: 197  GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
              Y+P+SP Y A SPG    GYSP++P+ + +SP YSP    YSPTSP+           
Sbjct: 1560 --YSPSSPNYAAASPGGASPGYSPTSPSYSPTSPNYSPTSPRYSPTSPNY---------- 1607

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS-----SPAYQPPS 520
             SP SP Y PTSP+Y+    + +    Y+PSSPAYSP SP+Y+  S     SP+Y P S
Sbjct: 1608 -SPTSPNYSPTSPSYSPTSPLYSPTATYAPSSPAYSPTSPSYSPTSPYSPTSPSYSPTS 1665

 Score =  106 bits (264), Expect = 1e-21
 Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM---SPASPGYAAMSPRFGGGLGGGPAG 190
            +SP  + A ++   +P   +P  SP   ++P     SP SP Y+  SP +        + 
Sbjct: 1628 YSPTATYAPSSPAYSP--TSPSYSPTSPYSPTSPSYSPTSPAYSPTSPSYSPS-SPSYSP 1684

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYA 361
             + +Y+P SP+Y  TSP   Y+P+TP+ + +SP YSP    YSPTSPS      P++   
Sbjct: 1685 TSPSYSPTSPSYSPTSPN--YTPATPSYSPTSPNYSPSSPHYSPTSPSYS----PSSPKY 1738

Query: 362  SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP SP Y PTSP+Y        A+  YSP+SP YSP SP+Y + SSP + P S
Sbjct: 1739 SPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYSPTSPSY-SPSSPQHSPGS 1790

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 70/182 (38%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
 Frame = +2

Query: 8    ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            AT S+SP   + + ++   +P   +P  SP+   +P+ SP SP Y+  SP +GG      
Sbjct: 1706 ATPSYSPTSPNYSPSSPHYSP--TSPSYSPS---SPKYSPTSPSYSPTSPSYGG------ 1754

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYS--------PTSPSVGARG 340
               +  Y PASP Y  TSP   YSP++P+ + SSP +SPG S        PT     AR 
Sbjct: 1755 ---SPQYTPASPQYSPTSPK--YSPTSPSYSPSSPQHSPGSSGSNFMVNSPTYSPTTARY 1809

Query: 341  GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS--SPAYQP 514
             P     SP S  Y PTSP Y         +  YSPSSPAYSP    Y+ +S  SP Y P
Sbjct: 1810 SPNMSSYSPGSQKYSPTSPVYT------PTSPHYSPSSPAYSPTGQGYSPSSPASPTYSP 1863

Query: 515  PS 520
             S
Sbjct: 1864 TS 1865

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 72/200 (36%), Positives = 93/200 (46%), Gaps = 36/200 (18%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +       PA    +
Sbjct: 1658 SPSYSPTSPAYSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPNYT------PA--TPS 1709

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGA--RGGPAAGYASP 367
            Y+P SP Y  +SP   YSP++P+ + SSP YSP    YSPTSPS G   +  PA+   SP
Sbjct: 1710 YSPTSPNYSPSSPH--YSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSP 1767

Query: 368  QSPGYVPTSPAYA----------------------RPGTVVAAANV---------YSPSS 454
             SP Y PTSP+Y+                       P T   + N+         YSP+S
Sbjct: 1768 TSPKYSPTSPSYSPSSPQHSPGSSGSNFMVNSPTYSPTTARYSPNMSSYSPGSQKYSPTS 1827

Query: 455  PAYSPFSPNYAAASSPAYQP 514
            P Y+P SP+Y + SSPAY P
Sbjct: 1828 PVYTPTSPHY-SPSSPAYSP 1846

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 55/144 (38%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
 Frame = +2

Query: 107  TPRMSPA-SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS 283
            TP MSPA +P   + +P            G G ++P+ P    T  G  +SPS  +    
Sbjct: 1480 TPSMSPAMTPWQQSQTP------------GYGEWSPSGPPSGMTPGGPSFSPSAQS---D 1524

Query: 284  SPGYSPGYSPTSPSVGARGGPAAGY--ASPQ-SPGYVPTSPAY--ARPGTVVAAANVYSP 448
            + G SP +SP   S  + G   + Y  +SP  SP Y P+SP Y  A PG    A+  YSP
Sbjct: 1525 ASGMSPSWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPG---GASPGYSP 1581

Query: 449  SSPAYSPFSPNYAAASSPAYQPPS 520
            +SP+YSP SPNY + +SP Y P S
Sbjct: 1582 TSPSYSPTSPNY-SPTSPRYSPTS 1604

[8][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1A
          Length = 1767

 Score =  113 bits (283), Expect = 7e-24
 Identities = 69/172 (40%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            ++SP   S  + G ++P   +PG    G  +P  SP SP Y   SP       GG    +
Sbjct: 1538 AWSPTPGSPGSPGPSSPYIPSPGELSCGAMSPSYSPTSPAYEPRSP-------GGYTPQS 1590

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
             +Y+P SP+Y  TSP   YSP++P  + +SP Y   SP YSPTSPS      P +   SP
Sbjct: 1591 PSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP 1644

Query: 368  QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1645 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695

 Score =  101 bits (251), Expect = 4e-20
 Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1632 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1678

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+  RP   
Sbjct: 1679 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1734

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              + + YSP+SP+YSP SPNY    SP Y P S
Sbjct: 1735 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1765

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 74/190 (38%), Positives = 93/190 (48%), Gaps = 38/190 (20%)
 Frame = +2

Query: 65   PGRMTPGRSPAGRFTPRMSP----ASPGYAAMSPRFG---GGLGGGP--AGGAGAYAPA- 214
            PG    GR P G  +P M+P    A+P Y A SPR G   G  G  P  A  A  ++P  
Sbjct: 1476 PGLGAAGRDPMGGISPAMTPWNQGATPAYGAWSPRSGMTPGAAGFSPSAASDASGFSPGY 1535

Query: 215  SPAYMAT--SPGM---------------------GYSPSTPALAVSSPG----YSPGYSP 313
            SPA+  T  SPG                       YSP++PA    SPG     SP YSP
Sbjct: 1536 SPAWSPTPGSPGSPGPSSPYIPSPGELSCGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSP 1595

Query: 314  TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAA 490
            TSPS      P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y +
Sbjct: 1596 TSPSYS----PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1650

Query: 491  ASSPAYQPPS 520
             +SP+Y P S
Sbjct: 1651 PTSPSYSPTS 1660

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1646 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1692

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP  P Y PTSP+Y+   P   
Sbjct: 1693 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1748

Query: 422  VAAANVYSPSSPAYSPFSPN 481
              + N Y+P SP YSP SPN
Sbjct: 1749 PTSPN-YTPMSPNYSPTSPN 1767

[9][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
            thaliana RepID=RPB1_ARATH
          Length = 1840

 Score =  113 bits (283), Expect = 7e-24
 Identities = 76/180 (42%), Positives = 101/180 (56%), Gaps = 12/180 (6%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            +FSP  SS+     ++PG    +PG SP    +P  SP SPGY+  SP +      G + 
Sbjct: 1536 AFSP--SSSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGYSP 1589

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYA 361
             + AY+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   
Sbjct: 1590 TSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPAY 1643

Query: 362  SPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
            SP SP Y PTSPAY+      +  +  YSP+SP+YSP SP+Y+  S      SPAY P S
Sbjct: 1644 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1703

 Score =  113 bits (282), Expect = 9e-24
 Identities = 73/175 (41%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A FSP +     +  ++PG    +PG SP    +P  SP SPGY+  SP +         
Sbjct: 1526 AQFSPYVGGMAFSPSSSPGYSPSSPGYSPT---SPGYSPTSPGYSPTSPGYSPTSPTYSP 1582

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
               G Y+P SPAY  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +  
Sbjct: 1583 SSPG-YSPTSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPS 1635

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSPAY+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1636 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1689

 Score =  102 bits (254), Expect = 2e-20
 Identities = 72/173 (41%), Positives = 92/173 (53%), Gaps = 24/173 (13%)
 Frame = +2

Query: 74   MTPGRSPA-------GRFTP--------RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
            MTP RSP        G  +P        R+SP S   A  SP + GG+   P+   G Y+
Sbjct: 1491 MTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSD--AQFSP-YVGGMAFSPSSSPG-YS 1546

Query: 209  PASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPG 379
            P+SP Y  TSPG  YSP++P  + +SPGYSP    YSP+SP       P +   SP SP 
Sbjct: 1547 PSSPGYSPTSPG--YSPTSPGYSPTSPGYSPTSPTYSPSSPGYS----PTSPAYSPTSPS 1600

Query: 380  YVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
            Y PTSP+Y+        +  YSP+SP+YSP SP+Y+  S      SPAY P S
Sbjct: 1601 YSPTSPSYS------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1647

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 68/174 (39%), Positives = 91/174 (52%), Gaps = 26/174 (14%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + AY+P SPAY  TSP   YS
Sbjct: 1619 SPSYSPT---SPSYSPTSPSYSPTSPAY--------SPTSPAYSPTSPAYSPTSPS--YS 1665

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVG----ARGGPAAGYA------SPQSPGYVPTSP 397
            P++P+ + +SP YSP    YSPTSPS      A    + GY+      SP SP Y PTSP
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSP 1725

Query: 398  -------------AYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                         AY+     ++ A+ YSP+SP YSP SP+Y + +SP+Y P S
Sbjct: 1726 SYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSY-SPTSPSYSPSS 1778

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 70/206 (33%), Positives = 94/206 (45%), Gaps = 40/206 (19%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S      A     +P  SP    +P  SP SP Y+  SP +        +  +
Sbjct: 1628 SYSPTSPSYSPTSPAY-SPTSPAYSPT---SPAYSPTSPSYSPTSPSY--------SPTS 1675

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG------------ 331
             +Y+P SP+Y  TSP   YSP++PA + +SPGYSP    YSPTSPS G            
Sbjct: 1676 PSYSPTSPSYSPTSPS--YSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAK 1733

Query: 332  -----------ARGGPAAGYA-------------SPQSPGYVPTSPAYARPGTVVAAANV 439
                       AR  PA+ Y+             SP SP Y P+SP Y+      + A+ 
Sbjct: 1734 YSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASP 1793

Query: 440  -YSPSSPAYSPFSPNYAAASSPAYQP 514
             YSPS+  YSP  P Y+ +S+  Y P
Sbjct: 1794 DYSPSA-GYSPTLPGYSPSSTGQYTP 1818

[10][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48673
          Length = 1880

 Score =  113 bits (282), Expect = 9e-24
 Identities = 71/182 (39%), Positives = 99/182 (54%), Gaps = 12/182 (6%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            +  FSP  S A +    +PG  +PG SP    +P  SP SPGY+  SP +        + 
Sbjct: 1545 STGFSPAYSPAWSPQPQSPGSPSPGYSPT---SPSYSPTSPGYSPASPSYSP-TSPSYSP 1600

Query: 191  GAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARG-- 340
             + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS       
Sbjct: 1601 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1660

Query: 341  -GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1661 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1719

Query: 515  PS 520
             S
Sbjct: 1720 SS 1721

 Score =  105 bits (261), Expect = 3e-21
 Identities = 70/173 (40%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            AS+SP+M S       TPG   PG SPA   +   SPA     +  P+  G    G +  
Sbjct: 1521 ASWSPMMGSG-----MTPGG--PGFSPANSESTGFSPAYSPAWSPQPQSPGSPSPGYSPT 1573

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P SP Y   SP   YSP++P+ + +SP Y   SP YSPTSPS      P +   S
Sbjct: 1574 SPSYSPTSPGYSPASP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYS 1627

Query: 365  PQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1679

 Score =  102 bits (253), Expect = 2e-20
 Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1658 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1704

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SPQSP Y P SP+Y+      +
Sbjct: 1705 PTSPSYSPTSPSYSPSSPKYSPTSPSY----SPTSPSYSPQSPSYSPGSPSYSPSSPKYS 1760

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SPN+ + SSP Y P S
Sbjct: 1761 PTSPSYSPTSPSYSPTSPNF-SPSSPTYSPAS 1791

 Score =  100 bits (249), Expect = 6e-20
 Identities = 65/156 (41%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1665 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1711

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
            P++P+ + SSP YSP    YSPTSPS   +     P +   SP SP Y PTSP+Y+   P
Sbjct: 1712 PTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSP 1771

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                 + N +SPSSP YSP SP+Y + +SP Y P S
Sbjct: 1772 SYSPTSPN-FSPSSPTYSPASPSY-SPTSPKYSPSS 1805

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/154 (40%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP++        +  + +Y+P SP+Y   SP   YS
Sbjct: 1700 SPSYSPT---SPSYSPTSPSYSPSSPKY--------SPTSPSYSPTSPSYSPQSP--SYS 1746

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P +P+ + SSP Y   SP YSPTSPS         P++   SP SP Y PTSP Y+    
Sbjct: 1747 PGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYS---- 1802

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               ++  YSP+SP YSP SP Y+ A SP Y P S
Sbjct: 1803 --PSSPKYSPTSPTYSPTSPKYSPA-SPTYSPTS 1833

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG--- 193
            SP  S    +   T    +P        +P  SP SP Y+  SP +  G           
Sbjct: 1700 SPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKY 1759

Query: 194  ---AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPG---YSPTSPS---VG 331
               + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSP+     
Sbjct: 1760 SPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTS 1819

Query: 332  ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
             +  PA+   SP SP Y P+SP Y+         + YSP+SP+YSP SP+Y+  S
Sbjct: 1820 PKYSPASPTYSPTSPKYSPSSPTYSPTSP---KGSTYSPTSPSYSPTSPSYSPTS 1871

 Score = 81.6 bits (200), Expect = 3e-14
 Identities = 55/144 (38%), Positives = 74/144 (51%)
 Frame = +2

Query: 89   SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 268
            SP+   +P+M+P + G   M      G    P  G+G           T  G G+SP+  
Sbjct: 1499 SPSQSMSPQMTPWNQGATPMH-----GASWSPMMGSGM----------TPGGPGFSPANS 1543

Query: 269  ALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSP 448
                 SP YSP +SP   S G+   P+ GY SP SP Y PTSP Y+       A+  YSP
Sbjct: 1544 ESTGFSPAYSPAWSPQPQSPGS---PSPGY-SPTSPSYSPTSPGYS------PASPSYSP 1593

Query: 449  SSPAYSPFSPNYAAASSPAYQPPS 520
            +SP+YSP SP+Y + +SP+Y P S
Sbjct: 1594 TSPSYSPTSPSY-SPTSPSYSPTS 1616

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +P  SPASP Y+  SP++        +  +  Y+P SP Y  TSP   YS
Sbjct: 1777 SPNFSPS---SPTYSPASPSYSPTSPKY--------SPSSPKYSPTSPTYSPTSPK--YS 1823

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
            P++P  + +SP YSP    YSPTSP  G+   P +   SP SP Y PTSP
Sbjct: 1824 PASPTYSPTSPKYSPSSPTYSPTSPK-GSTYSPTSPSYSPTSPSYSPTSP 1872

 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S A  +   T  + +P        +P  SP SP Y+  SP +        +  +  
Sbjct: 1784 SPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY--------SPTSPK 1835

Query: 203  YAPASPAYMATSP-GMGYSPSTPALAVSSPGYSPGYSPTSPSVG 331
            Y+P+SP Y  TSP G  YSP++P+ + +SP YSP    TSP +G
Sbjct: 1836 YSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSYSP----TSPGMG 1875

[11][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NVN7_VITVI
          Length = 1010

 Score =  112 bits (281), Expect = 1e-23
 Identities = 74/184 (40%), Positives = 100/184 (54%), Gaps = 15/184 (8%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-GP 184
            A FSP +     +  ++PG    +PG SP+   +P  SP SPGY+  SP +     G  P
Sbjct: 761  AQFSPYVGGMAFSPTSSPGYSPSSPGYSPS---SPGYSPTSPGYSPTSPGYSPTSPGYSP 817

Query: 185  AG-----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG 340
                    +  Y+P SPAY  TSP   YSP++P+ + +SP YSP    YSPTSPS     
Sbjct: 818  TSPTYSPSSPGYSPTSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 875

Query: 341  ---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAY 508
                P +   SP SP Y PTSPAY+      +  +  YSP+SP+YSP SP+Y + +SP+Y
Sbjct: 876  PSYSPTSPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 934

Query: 509  QPPS 520
             P S
Sbjct: 935  SPTS 938

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 67/161 (41%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
 Frame = +2

Query: 74   MTPGRSPAGRFTPRMSPASPGYAA-----MSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
            MTP RSP           SP Y       +SP         P  G  A++P S      S
Sbjct: 726  MTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFS--PYVGGMAFSPTS------S 777

Query: 239  PGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPA 400
            PG  YSPS+P  + SSPGY   SPGYSPTSP          P +   SP SPGY PTSPA
Sbjct: 778  PG--YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 835

Query: 401  YARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 836  YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 875

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 59/145 (40%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 889  SPSYSPT---SPAYSPTSPAYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 935

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP   GYSPTSPS            SP SP Y PTSP+Y       +
Sbjct: 936  PTSPSYSPTSPAYSPTSPGYSPTSPSY-----------SPTSPSYSPTSPSYNPSSAKYS 984

Query: 428  AANVYSPSSP------AYSPFSPNY 484
             +  YSPSSP       YSP SPNY
Sbjct: 985  PSLAYSPSSPRLSPSSPYSPTSPNY 1009

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 62/156 (39%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + AY+P SPAY  TSP   YS
Sbjct: 868  SPSYSPT---SPSYSPTSPVYSPTSPSY--------SPTSPAYSPTSPAYSPTSPS--YS 914

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+      
Sbjct: 915  PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPS------ 968

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
                   YSP+SP+Y+P S  Y  + S AY P S R
Sbjct: 969  -------YSPTSPSYNPSSAKY--SPSLAYSPSSPR 995

[12][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase n=1 Tax=Vitis
            vinifera RepID=UPI0001985649
          Length = 1848

 Score =  112 bits (280), Expect = 2e-23
 Identities = 74/173 (42%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            A FSP +      G A     +PG SP+   +P  SP+SPGY+  SP             
Sbjct: 1524 AQFSPYVG-----GMAFSPTSSPGYSPS---SPGYSPSSPGYSPTSP------------- 1562

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
               Y+P SP Y  TSPG  YSP++P  + SSPGYSP    YSPTSPS      P +   S
Sbjct: 1563 --GYSPTSPGYSPTSPG--YSPTSPTYSPSSPGYSPTSPAYSPTSPSYS----PTSPSYS 1614

Query: 365  PQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSP+Y+      +  +  YSP+SP YSP SP+Y + +SPAY P S
Sbjct: 1615 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPSY-SPTSPAYSPTS 1666

 Score =  111 bits (277), Expect = 4e-23
 Identities = 76/188 (40%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
 Frame = +2

Query: 17   SFSPIMS-----SADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 175
            +FSP  S     S+     ++PG    +PG SP    +P  SP SPGY+  SP +     
Sbjct: 1534 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-S 1589

Query: 176  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG-- 340
             G +  + AY+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS       
Sbjct: 1590 PGYSPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPV 1647

Query: 341  -GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAAS------ 496
              P +   SP SP Y PTSPAY+      +  +  YSP+SP+YSP SP+Y+  S      
Sbjct: 1648 YSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1707

Query: 497  SPAYQPPS 520
            SPAY P S
Sbjct: 1708 SPAYSPTS 1715

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 64/157 (40%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1652 SPSYSPT---SPAYSPTSPAYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1698

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP   GYSPTSPS            SP SP Y PTSP+Y       +
Sbjct: 1699 PTSPSYSPTSPAYSPTSPGYSPTSPSY-----------SPTSPSYSPTSPSYNPSSAKYS 1747

Query: 428  AANVYSPSSP------AYSPFSPNYAAASSPAYQPPS 520
             +  YSPSSP       YSP SPNY + +SP+Y P S
Sbjct: 1748 PSLAYSPSSPRLSPSSPYSPTSPNY-SPTSPSYSPTS 1783

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 66/184 (35%), Positives = 89/184 (48%), Gaps = 18/184 (9%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP+ S    +   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1645 SPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1696

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG---ARGGPAAGYA- 361
            Y+P SP+Y  TSP   YSP++P  + +SP YSP    YSPTSPS     A+  P+  Y+ 
Sbjct: 1697 YSPTSPSYSPTSPA--YSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSSAKYSPSLAYSP 1754

Query: 362  -----------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAY 508
                       SP SP Y PTSP+Y+        +  YSP+SP YSP SP Y +  SP Y
Sbjct: 1755 SSPRLSPSSPYSPTSPNYSPTSPSYS------PTSPSYSPASPTYSPTSP-YNSGVSPDY 1807

Query: 509  QPPS 520
             P S
Sbjct: 1808 SPSS 1811

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 67/161 (41%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
 Frame = +2

Query: 74   MTPGRSPAGRFTPRMSPASPGYAA-----MSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
            MTP RSP           SP Y       +SP         P  G  A++P S      S
Sbjct: 1489 MTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFS--PYVGGMAFSPTS------S 1540

Query: 239  PGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPA 400
            PG  YSPS+P  + SSPGY   SPGYSPTSP          P +   SP SPGY PTSPA
Sbjct: 1541 PG--YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598

Query: 401  YARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1599 YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1638

 Score = 86.7 bits (213), Expect = 9e-16
 Identities = 60/153 (39%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS----PG 244
            +P  SP    +P  SP SPGY+  SP +        +  + +Y+P SP+Y  +S    P 
Sbjct: 1701 SPSYSPT---SPAYSPTSPGYSPTSPSY--------SPTSPSYSPTSPSYNPSSAKYSPS 1749

Query: 245  MGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV 424
            + YSPS+P L+ SSP     YSPTSP+      P +   SP SP Y P SP Y+      
Sbjct: 1750 LAYSPSSPRLSPSSP-----YSPTSPNY----SPTSPSYSPTSPSYSPASPTYSPTSPYN 1800

Query: 425  AAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +  +  YSPSSP YSP S  Y + S+P Y P S
Sbjct: 1801 SGVSPDYSPSSPQYSP-SAGY-SPSAPGYSPSS 1831

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 57/156 (36%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S      A     +PG SP    +P  SP SP Y+  SP +           +
Sbjct: 1696 SYSPTSPSYSPTSPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPSYNPS--SAKYSPS 1749

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
             AY+P+SP    +SP   YSP++P  + +SP YSP    YSP SP+      P + Y S 
Sbjct: 1750 LAYSPSSPRLSPSSP---YSPTSPNYSPTSPSYSPTSPSYSPASPTY----SPTSPYNSG 1802

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
             SP Y P+SP Y       + +  YSPS+P YSP S
Sbjct: 1803 VSPDYSPSSPQY-------SPSAGYSPSAPGYSPSS 1831

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 52/146 (35%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            S+SP   ++ A    +PG    +P  SP    +P  SP SP Y   S ++   L   P+ 
Sbjct: 1703 SYSP---TSPAYSPTSPGYSPTSPSYSPT---SPSYSPTSPSYNPSSAKYSPSLAYSPSS 1756

Query: 191  G----AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSP---GYSPGYSPTSPSVGA 334
                 +  Y+P SP Y  TSP        YSP++P  + +SP   G SP YSP+SP    
Sbjct: 1757 PRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPTSPYNSGVSPDYSPSSPQYS- 1815

Query: 335  RGGPAAGYASPQSPGYVPTSPAYARP 412
               P+AGY SP +PGY P+S +   P
Sbjct: 1816 ---PSAGY-SPSAPGYSPSSTSQYTP 1837

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            ++A +SP ++ + ++ R +P       SP    +P  SP SP Y+  SP           
Sbjct: 1742 SSAKYSPSLAYSPSSPRLSPS------SPYSPTSPNYSPTSPSYSPTSP----------- 1784

Query: 188  GGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGYSP---GYSPTSPS 325
                +Y+PASP Y  TSP        YSPS+P  + S+ GYSP   GYSP+S S
Sbjct: 1785 ----SYSPASPTYSPTSPYNSGVSPDYSPSSPQYSPSA-GYSPSAPGYSPSSTS 1833

[13][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48671
          Length = 1921

 Score =  112 bits (280), Expect = 2e-23
 Identities = 78/184 (42%), Positives = 103/184 (55%), Gaps = 15/184 (8%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA------SPGYAAMSPRFGGGLG 175
            AS+SP+M S    G   PG  +P  S +  F+P  SPA      SPG  A SP       
Sbjct: 1529 ASWSPMMGSGMTPGG--PG-FSPANSESTGFSPAYSPAWSPQPQSPGSPANSPYIPS--- 1582

Query: 176  GGPAGGAG-AYAPASPAYMATSPGM----GYSPSTPALAVSSPGYSPG---YSPTSPSVG 331
              PAG    +Y+PASP+Y+  SP      GYSP++P+ + +SPGYSP    YSPTSPS  
Sbjct: 1583 --PAGPMSPSYSPASPSYLPASPATPQSPGYSPTSPSYSPTSPGYSPASPSYSPTSPSY- 1639

Query: 332  ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAY 508
                P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y
Sbjct: 1640 ---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 1695

Query: 509  QPPS 520
             P S
Sbjct: 1696 SPTS 1699

 Score =  111 bits (278), Expect = 3e-23
 Identities = 73/177 (41%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            +  FSP  S A +    +PG         SPAG  +P  SPASP Y   SP      G  
Sbjct: 1553 STGFSPAYSPAWSPQPQSPGSPANSPYIPSPAGPMSPSYSPASPSYLPASPATPQSPG-- 1610

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
                   Y+P SP+Y  TSPG  YSP++P+ + +SP YSP    YSPTSPS      P +
Sbjct: 1611 -------YSPTSPSYSPTSPG--YSPASPSYSPTSPSYSPTSPSYSPTSPSYS----PTS 1657

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1658 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1713

 Score =  111 bits (278), Expect = 3e-23
 Identities = 72/175 (41%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S   A  ATP   +PG SP    +P  SP SPGY+  SP +        +  +
Sbjct: 1590 SYSPASPSYLPASPATP--QSPGYSPT---SPSYSPTSPGYSPASPSYSP-TSPSYSPTS 1643

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1644 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1701

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1702 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1755

 Score =  102 bits (253), Expect = 2e-20
 Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1699 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1745

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SPQSP Y P SP+Y+      +
Sbjct: 1746 PTSPSYSPTSPSYSPSSPKYSPTSPSY----SPTSPSYSPQSPSYSPGSPSYSPSSPKYS 1801

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SPN+ + SSP Y P S
Sbjct: 1802 PTSPSYSPTSPSYSPTSPNF-SPSSPTYSPAS 1832

 Score =  100 bits (249), Expect = 6e-20
 Identities = 65/156 (41%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1706 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1752

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
            P++P+ + SSP YSP    YSPTSPS   +     P +   SP SP Y PTSP+Y+   P
Sbjct: 1753 PTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSP 1812

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                 + N +SPSSP YSP SP+Y + +SP Y P S
Sbjct: 1813 SYSPTSPN-FSPSSPTYSPASPSY-SPTSPKYSPSS 1846

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/154 (40%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP++        +  + +Y+P SP+Y   SP   YS
Sbjct: 1741 SPSYSPT---SPSYSPTSPSYSPSSPKY--------SPTSPSYSPTSPSYSPQSP--SYS 1787

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P +P+ + SSP Y   SP YSPTSPS         P++   SP SP Y PTSP Y+    
Sbjct: 1788 PGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYS---- 1843

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               ++  YSP+SP YSP SP Y+ A SP Y P S
Sbjct: 1844 --PSSPKYSPTSPTYSPTSPKYSPA-SPTYSPTS 1874

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG--- 193
            SP  S    +   T    +P        +P  SP SP Y+  SP +  G           
Sbjct: 1741 SPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKY 1800

Query: 194  ---AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPG---YSPTSPS---VG 331
               + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSP+     
Sbjct: 1801 SPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTS 1860

Query: 332  ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
             +  PA+   SP SP Y P+SP Y+         + YSP+SP+YSP SP+Y+  S
Sbjct: 1861 PKYSPASPTYSPTSPKYSPSSPTYSPTSP---KGSTYSPTSPSYSPTSPSYSPTS 1912

 Score = 81.3 bits (199), Expect = 4e-14
 Identities = 57/156 (36%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
 Frame = +2

Query: 89   SPAGRFTPRMSPASPGYAAM-----SPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 253
            SP+   +P+M+P + G   M     SP  G G+  G  G + A + ++    A SP    
Sbjct: 1507 SPSQSMSPQMTPWNQGATPMHGASWSPMMGSGMTPGGPGFSPANSESTGFSPAYSPAWSP 1566

Query: 254  SPSTPALAVSSP-------GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
             P +P    +SP         SP YSP SPS        A  A+PQSPGY PTSP+Y   
Sbjct: 1567 QPQSPGSPANSPYIPSPAGPMSPSYSPASPSY-----LPASPATPQSPGYSPTSPSY--- 1618

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                      SP+SP YSP SP+Y + +SP+Y P S
Sbjct: 1619 ----------SPTSPGYSPASPSY-SPTSPSYSPTS 1643

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +P  SPASP Y+  SP++        +  +  Y+P SP Y  TSP   YS
Sbjct: 1818 SPNFSPS---SPTYSPASPSYSPTSPKY--------SPSSPKYSPTSPTYSPTSPK--YS 1864

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
            P++P  + +SP YSP    YSPTSP  G+   P +   SP SP Y PTSP
Sbjct: 1865 PASPTYSPTSPKYSPSSPTYSPTSPK-GSTYSPTSPSYSPTSPSYSPTSP 1913

 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S A  +   T  + +P        +P  SP SP Y+  SP +        +  +  
Sbjct: 1825 SPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY--------SPTSPK 1876

Query: 203  YAPASPAYMATSP-GMGYSPSTPALAVSSPGYSPGYSPTSPSVG 331
            Y+P+SP Y  TSP G  YSP++P+ + +SP YSP    TSP +G
Sbjct: 1877 YSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSYSP----TSPGMG 1916

[14][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2A
          Length = 1896

 Score =  112 bits (280), Expect = 2e-23
 Identities = 76/180 (42%), Positives = 98/180 (54%), Gaps = 11/180 (6%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRM-----TPGR--SPAGRFTPRMSPASPGYAAMSPRFGGGL 172
            A FSP  S+A  A   +PG       TPG   SP G  +P  SP SP Y   SP      
Sbjct: 1543 AGFSP--SAASDASGFSPGYSPAWSPTPGSPGSPGGAMSPSYSPTSPAYEPRSP------ 1594

Query: 173  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGG 343
             GG    + +Y+P SP+Y  TSP   YSP++P  + +SP Y   SP YSPTSPS      
Sbjct: 1595 -GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYSPTSPSYSPTSPSYSPTSPSY----S 1647

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1648 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1706

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1581 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1636

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1637 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1694

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+ +      +SP+Y P 
Sbjct: 1695 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1754

Query: 518  S 520
            S
Sbjct: 1755 S 1755

 Score =  103 bits (256), Expect = 1e-20
 Identities = 77/205 (37%), Positives = 100/205 (48%), Gaps = 41/205 (20%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFG---GGLG-- 175
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SPR G   G  G  
Sbjct: 1487 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPRSGMTPGAAGFS 1546

Query: 176  ----------------------GGPAGGAGA----YAPASPAYMATSPGMGYSPSTPALA 277
                                  G P    GA    Y+P SPAY   SPG GY+P +P+ +
Sbjct: 1547 PSAASDASGFSPGYSPAWSPTPGSPGSPGGAMSPSYSPTSPAYEPRSPG-GYTPQSPSYS 1605

Query: 278  VSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYS 445
             +SP Y   SP YSPTSP+      P +   SP SP Y PTSP+Y+      +  +  YS
Sbjct: 1606 PTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1661

Query: 446  PSSPAYSPFSPNYAAASSPAYQPPS 520
            P+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1662 PTSPSYSPTSPSY-SPTSPSYSPTS 1685

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 64/159 (40%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1636 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1682

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+   P   
Sbjct: 1683 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPNYS 1738

Query: 422  VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
             +  N Y+P+SP+YSP SP+Y+  S      SP+Y P S
Sbjct: 1739 PSRPN-YTPTSPSYSPTSPSYSPTSPKYTPTSPSYSPSS 1776

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP++           + +
Sbjct: 1720 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPKY--------TPTSPS 1771

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
            Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   SP S
Sbjct: 1772 YSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTS 1825

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
            P Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P S
Sbjct: 1826 PVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 1877

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1748 SPSYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1792

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1793 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1846

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1847 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1889

[15][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BD271
          Length = 1749

 Score =  112 bits (280), Expect = 2e-23
 Identities = 75/176 (42%), Positives = 99/176 (56%), Gaps = 7/176 (3%)
 Frame = +2

Query: 14   ASFSPIMSS--ADAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGP 184
            A FSPI ++  +D +G  T        S  G  +P  SP SP  Y A SP FGG    G 
Sbjct: 1502 AGFSPIHTAPVSDGSGALT--------SYGGATSP--SPTSPFSYGATSPSFGGVTSPGY 1551

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAG 355
             G +  Y+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P + 
Sbjct: 1552 GGTSPTYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSP 1605

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1606 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1660

 Score =  100 bits (249), Expect = 6e-20
 Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1583 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1629

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1630 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPQYS 1685

Query: 428  AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SP+Y + +SP Y P S
Sbjct: 1686 PTSPQYSPTSPSYSPTSPSY-SPTSPQYSPTS 1716

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 62/151 (41%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1604 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1650

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 1651 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPQYSPTSPQYSPTSPSYS------P 1700

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1701 TSPSYSPTSPQYSPTSPQY-SPTSPQYSPGS 1730

 Score = 74.3 bits (181), Expect = 5e-12
 Identities = 52/136 (38%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1639 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPQ--YS 1685

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P  + +SP YSP    YSPTSP             SP SP Y PTSP          
Sbjct: 1686 PTSPQYSPTSPSYSPTSPSYSPTSPQY-----------SPTSPQYSPTSPQ--------- 1725

Query: 428  AANVYSPSSPAYSPFS 475
                YSP SP YSP S
Sbjct: 1726 ----YSPGSPLYSPES 1737

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 45/116 (38%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1632 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1678

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA 406
            P++P  + +SP YSP    YSPTSPS         P +   SP SP Y P SP Y+
Sbjct: 1679 PTSPQYSPTSPQYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPGSPLYS 1734

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP++        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1667 SPSYSPT---SPSYSPTSPQYSPTSPQY--------SPTSPSYSPTSPSYSPTSPQ--YS 1713

Query: 257  PSTPALAVSSPGYSPG---YSPTSPS 325
            P++P  + +SP YSPG   YSP S S
Sbjct: 1714 PTSPQYSPTSPQYSPGSPLYSPESES 1739

[16][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
            tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
          Length = 1706

 Score =  112 bits (280), Expect = 2e-23
 Identities = 79/178 (44%), Positives = 96/178 (53%), Gaps = 9/178 (5%)
 Frame = +2

Query: 14   ASFSPIMS--SADAAGRATPGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGP 184
            ASFSP  S  S         G    G SPA   T P+ SP SP Y+  SP +       P
Sbjct: 1487 ASFSPAYSPDSGSYGSGFASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAYSPT---SP 1543

Query: 185  AGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPA 349
            A    + AY+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP+      P 
Sbjct: 1544 AYSPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PT 1597

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +   SP SP Y PTSPAY+      +  +  YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 1598 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 1654

 Score =  109 bits (273), Expect = 1e-22
 Identities = 76/189 (40%), Positives = 95/189 (50%), Gaps = 26/189 (13%)
 Frame = +2

Query: 32   MSSADAAGRATPGRMTP-----------GRSP----AGRFTPRMSPAS--PGYAAMSPRF 160
            M+     G ATP   TP             SP       F+P +  AS  P Y+  S  +
Sbjct: 1441 MAGVGGVGGATPYATTPFAASPMVGDGAAASPFVDGGAAFSPAVGAASFSPAYSPDSGSY 1500

Query: 161  GGGLGGGP--AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPS 325
            G G   G   AG + AY+P SP Y  TSP   YSP++PA + +SP YSP    YSPTSP+
Sbjct: 1501 GSGFASGSYGAGDSPAYSPTSPQYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPA 1558

Query: 326  VGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAA 493
                     P +   SP SP Y PTSPAY+      +  +  YSP+SPAYSP SP Y + 
Sbjct: 1559 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SP 1617

Query: 494  SSPAYQPPS 520
            +SPAY P S
Sbjct: 1618 TSPAYSPTS 1626

 Score =  108 bits (271), Expect = 2e-22
 Identities = 70/170 (41%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1528 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1579

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP+      P +   SP S
Sbjct: 1580 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTS 1633

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSPAY+      +  +  YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 1634 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 1682

 Score =  107 bits (268), Expect = 4e-22
 Identities = 69/168 (41%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1542 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1593

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP+      P +   SP S
Sbjct: 1594 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTS 1647

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSPAY+      +  +  YSP+SPAYSP SP Y + +SPAY P
Sbjct: 1648 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSP 1694

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 53/134 (39%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1577 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1628

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP+      P +   SP S
Sbjct: 1629 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTS 1682

Query: 374  PGYVPTSPAYARPG 415
            P Y PTSPAY+  G
Sbjct: 1683 PAYSPTSPAYSPSG 1696

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 56/133 (42%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
 Frame = +2

Query: 170  LGGGPAGGAGAYAPASPAYMATSP----GMGYSPSTPALAVSSP-----GYSPGYSPTSP 322
            LG    GG G   P +    A SP    G   SP     A  SP      +SP YSP S 
Sbjct: 1439 LGMAGVGGVGGATPYATTPFAASPMVGDGAAASPFVDGGAAFSPAVGAASFSPAYSPDSG 1498

Query: 323  SVG---ARGGPAAGYA---SPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPN 481
            S G   A G   AG +   SP SP Y PTSPAY+      +  +  YSP+SPAYSP SP 
Sbjct: 1499 SYGSGFASGSYGAGDSPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1558

Query: 482  YAAASSPAYQPPS 520
            Y + +SPAY P S
Sbjct: 1559 Y-SPTSPAYSPTS 1570

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 39/107 (36%), Positives = 51/107 (47%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1605 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1656

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGG 343
            Y+P SPAY  TSP   YSP++PA + +    SP YSPTSP+    GG
Sbjct: 1657 YSPTSPAYSPTSPA--YSPTSPAYSPT----SPAYSPTSPAYSPSGG 1697

[17][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
          Length = 1943

 Score =  112 bits (280), Expect = 2e-23
 Identities = 78/176 (44%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
 Frame = +2

Query: 59   ATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA----- 214
            AT   MTPG    SP+G      SP   G +      GG LGG    GAGAY+PA     
Sbjct: 1597 ATGSGMTPGGAGFSPSGHSEGGFSPYGGGGSWSPGSPGGSLGGMSPSGAGAYSPAASDYG 1656

Query: 215  -------SPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
                   SP Y  TSP   Y  S+PA  V SP Y   SP YSPTSPS      P +   S
Sbjct: 1657 SGLEGLSSPGYSPTSPASPYGASSPAYGVMSPRYSPTSPSYSPTSPSY----SPTSPSYS 1712

Query: 365  PQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
            P SP Y PTSP+Y+   PG    + + YSP+SP+YSP SP+Y+ A SP Y P S R
Sbjct: 1713 PTSPSYSPTSPSYSPTSPGYSPTSPS-YSPTSPSYSPTSPSYSPA-SPGYSPSSPR 1766

 Score =  111 bits (278), Expect = 3e-23
 Identities = 74/188 (39%), Positives = 98/188 (52%), Gaps = 14/188 (7%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            +   ++SP   +A   G    G  +PG SP    +P    +SP Y  MSPR+        
Sbjct: 1643 SGAGAYSP---AASDYGSGLEGLSSPGYSPTSPASP-YGASSPAYGVMSPRY-------- 1690

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG----- 340
            +  + +Y+P SP+Y  TSP   YSP++P+ + +SP YSP   GYSPTSPS          
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSP 1748

Query: 341  -----GPAAGYASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSP 502
                  PA+   SP SP Y PTSPAY+    T    +  YSP+SP YSP SP+Y+ A SP
Sbjct: 1749 TSPSYSPASPGYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPA-SP 1807

Query: 503  AYQPPSRR 526
             Y P S R
Sbjct: 1808 GYSPSSPR 1815

 Score =  110 bits (274), Expect = 8e-23
 Identities = 69/156 (44%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG--AGAYAPASPAYMATSPGMG 250
            +P  SP    +P  SPASPGY+  SPR+       PA    +  Y+P SPAY  TSP   
Sbjct: 1743 SPSYSPT---SPSYSPASPGYSPSSPRYSPT---SPAYSPTSPTYSPTSPAYSPTSPT-- 1794

Query: 251  YSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARP 412
            YSP++P+ + +SPGYSP    YSPTSP+         P++   SP SP Y P+SP Y   
Sbjct: 1795 YSPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPAYSPSSPQYSPSSPQYSPSSPQYTPS 1854

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                 A+  YSP+SP YSP SP Y + SSP Y P S
Sbjct: 1855 SPAGDASPAYSPTSPQYSPSSPRY-SPSSPQYSPTS 1889

 Score =  103 bits (258), Expect = 6e-21
 Identities = 71/175 (40%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S        T    +P        +P  SPASPGY+  SPR+        +  +  
Sbjct: 1771 SPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRY--------SPTSPT 1822

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---------SPGYSPTSPSVGARGGPAAG 355
            Y+P SPAY  +SP   YSPS+P  + SSP Y         SP YSPTSP       P++ 
Sbjct: 1823 YSPTSPAYSPSSP--QYSPSSPQYSPSSPQYTPSSPAGDASPAYSPTSPQY----SPSSP 1876

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP SP Y PTSP Y+ P +   A   YS SSP YSP SP Y + SSP Y P S
Sbjct: 1877 RYSPSSPQYSPTSPQYS-PSSPGGAGTSYSRSSPQYSPSSPQY-SPSSPQYSPSS 1929

 Score = 87.4 bits (215), Expect = 5e-16
 Identities = 65/149 (43%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +P+ SP+SP Y+  SP++       P+  AG    ASPAY  TSP   YS
Sbjct: 1827 SPAYSPS---SPQYSPSSPQYSPSSPQYT------PSSPAG---DASPAYSPTSPQ--YS 1872

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P  + SSP Y   SP YSP+SP     GG    Y S  SP Y P+SP          
Sbjct: 1873 PSSPRYSPSSPQYSPTSPQYSPSSP-----GGAGTSY-SRSSPQYSPSSPQ--------- 1917

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQP 514
                YSPSSP YSP SP Y + SSP Y P
Sbjct: 1918 ----YSPSSPQYSPSSPQY-SPSSPQYSP 1941

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 53/139 (38%), Positives = 66/139 (47%), Gaps = 8/139 (5%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +      +  + TP  SPAG  +P  SP SP Y+  SPR               
Sbjct: 1834 SPQYSPSSPQYSPSSPQYTPS-SPAGDASPAYSPTSPQYSPSSPR--------------- 1877

Query: 203  YAPASPAYMATSPGMGYSPSTP-----ALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
            Y+P+SP Y  TSP   YSPS+P     + + SSP YSP    YSP+SP            
Sbjct: 1878 YSPSSPQYSPTSPQ--YSPSSPGGAGTSYSRSSPQYSPSSPQYSPSSPQY---------- 1925

Query: 359  ASPQSPGYVPTSPAYARPG 415
             SP SP Y P+SP Y+ PG
Sbjct: 1926 -SPSSPQYSPSSPQYS-PG 1942

[18][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
            RepID=B5RSM9_DEBHA
          Length = 1749

 Score =  112 bits (280), Expect = 2e-23
 Identities = 75/176 (42%), Positives = 99/176 (56%), Gaps = 7/176 (3%)
 Frame = +2

Query: 14   ASFSPIMSS--ADAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGP 184
            A FSPI ++  +D +G  T        S  G  +P  SP SP  Y A SP FGG    G 
Sbjct: 1502 AGFSPIHTAPVSDGSGALT--------SYGGATSP--SPTSPFSYGATSPSFGGVTSPGY 1551

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAG 355
             G +  Y+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P + 
Sbjct: 1552 GGTSPTYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSP 1605

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1606 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1660

 Score =  100 bits (249), Expect = 6e-20
 Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1583 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1629

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1630 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPQYS 1685

Query: 428  AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SP+Y + +SP Y P S
Sbjct: 1686 PTSPQYSPTSPSYSPTSPSY-SPTSPQYSPTS 1716

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 63/157 (40%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1604 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1650

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 1651 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPQYSPTSPQYSPTSPSYS------P 1700

Query: 428  AANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
             +  YSP+SP YSP SP Y+  S      SP+Y P S
Sbjct: 1701 TSPSYSPTSPQYSPTSPQYSPTSPQYSPGSPSYSPES 1737

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP++        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1667 SPSYSPT---SPSYSPTSPQYSPTSPQY--------SPTSPSYSPTSPSYSPTSP--QYS 1713

Query: 257  PSTPALAVSSPGYSPG---YSPTSPS 325
            P++P  + +SP YSPG   YSP S S
Sbjct: 1714 PTSPQYSPTSPQYSPGSPSYSPESES 1739

[19][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YN85_CANAL
          Length = 1742

 Score =  112 bits (279), Expect = 2e-23
 Identities = 75/174 (43%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            AT+ FS   +S  + G  +PG    G SP    +P  SP SP YA  SP +        A
Sbjct: 1520 ATSPFSYGYNSITSPGYTSPGY---GYSPT---SPSYSPTSPSYAPTSPAYSP-TSPSYA 1572

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
              + AY+P SP+Y  TSP   YSP++P+ A +SP YSP    YSPTSPS      P +  
Sbjct: 1573 PTSPAYSPTSPSYAPTSPA--YSPTSPSYAPTSPAYSPTSPAYSPTSPSYS----PTSPQ 1626

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP+Y+        +  YSP+SPAYSP SP+Y + +SP+Y P S
Sbjct: 1627 YSPTSPSYSPTSPSYS------PTSPSYSPTSPAYSPTSPSY-SPTSPSYSPTS 1673

 Score =  102 bits (254), Expect = 2e-20
 Identities = 68/173 (39%), Positives = 86/173 (49%), Gaps = 7/173 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P        +P  SP SP YA  SP +        A  + A
Sbjct: 1547 SPSYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSP-TSPSYAPTSPA 1605

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYAS 364
            Y+P SPAY  TSP   YSP++P  + +SP YSP    YSPTSPS         P +   S
Sbjct: 1606 YSPTSPAYSPTSPS--YSPTSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYS 1663

Query: 365  PQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSP Y+      +  +  YSP+SP+YSP SP Y + +SP Y P S
Sbjct: 1664 PTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQY-SPTSPQYSPTS 1715

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 61/150 (40%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP++        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1603 SPAYSPT---SPAYSPTSPSYSPTSPQY--------SPTSPSYSPTSPSYSPTSPS--YS 1649

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++PA + +SP YSP    YSPTSP       P +   SP SP Y PTSP+Y+      +
Sbjct: 1650 PTSPAYSPTSPSYSPTSPSYSPTSPQYS----PTSPSYSPTSPQYSPTSPSYSPTSPQYS 1705

Query: 428  AANV-YSPSSPAYSPFSPNYAAASSPAYQP 514
              +  YSP+SP YSP SP Y +  SP Y+P
Sbjct: 1706 PTSPQYSPTSPQYSPTSPQY-SPGSPGYEP 1734

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 71/181 (39%), Positives = 90/181 (49%), Gaps = 8/181 (4%)
 Frame = +2

Query: 2    INATASFSPI----MSSADAAGRATPGRMTPGRSPAGRFTPRM-SPASPGYAAMSPRFGG 166
            I+A A FSPI    M+  +  G  + G      +    F+    S  SPGY   SP +G 
Sbjct: 1486 IDAGAGFSPIHIAQMNEGNIGGLTSYGGQPTSPAATSPFSYGYNSITSPGYT--SPGYG- 1542

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
                        Y+P SP+Y  TSP   Y+P++PA + +SP Y   SP YSPTSPS    
Sbjct: 1543 ------------YSPTSPSYSPTSPS--YAPTSPAYSPTSPSYAPTSPAYSPTSPSYA-- 1586

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
              P +   SP SP Y PTSPAY             SP+SPAYSP SP+Y + +SP Y P 
Sbjct: 1587 --PTSPAYSPTSPSYAPTSPAY-------------SPTSPAYSPTSPSY-SPTSPQYSPT 1630

Query: 518  S 520
            S
Sbjct: 1631 S 1631

 Score = 86.7 bits (213), Expect = 9e-16
 Identities = 59/158 (37%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            A  SP  S    A   T    +P        +P  SP SP Y+  SP +        +  
Sbjct: 1600 APTSPAYSPTSPAYSPTSPSYSPTSPQYSPTSPSYSPTSPSYSPTSPSY--------SPT 1651

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
            + AY+P SP+Y  TSP   YSP++P  + +SP YSP    YSPTSPS      P +   S
Sbjct: 1652 SPAYSPTSPSYSPTSPS--YSPTSPQYSPTSPSYSPTSPQYSPTSPSYS----PTSPQYS 1705

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
            P SP Y PTSP Y+        +  YSP SP Y P  P
Sbjct: 1706 PTSPQYSPTSPQYS------PTSPQYSPGSPGYEPEPP 1737

[20][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
            RepID=UPI0000E48672
          Length = 1913

 Score =  111 bits (278), Expect = 3e-23
 Identities = 73/177 (41%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            +  FSP  S A +    +PG         SPAG  +P  SPASP Y   SP      G  
Sbjct: 1545 STGFSPAYSPAWSPQPQSPGSPANSPYIPSPAGPMSPSYSPASPSYLPASPATPQSPG-- 1602

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
                   Y+P SP+Y  TSPG  YSP++P+ + +SP YSP    YSPTSPS      P +
Sbjct: 1603 -------YSPTSPSYSPTSPG--YSPASPSYSPTSPSYSPTSPSYSPTSPSYS----PTS 1649

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1650 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1705

 Score =  111 bits (278), Expect = 3e-23
 Identities = 72/175 (41%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S   A  ATP   +PG SP    +P  SP SPGY+  SP +        +  +
Sbjct: 1582 SYSPASPSYLPASPATP--QSPGYSPT---SPSYSPTSPGYSPASPSYSP-TSPSYSPTS 1635

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1636 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1693

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1694 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1747

 Score =  107 bits (266), Expect = 7e-22
 Identities = 75/172 (43%), Positives = 96/172 (55%), Gaps = 19/172 (11%)
 Frame = +2

Query: 62   TPGRMTPGRSPAGR----FTPRMSPA------SPGYAAMSPRFGGGLGGGPAGGAG-AYA 208
            TPG   PG SPA      F+P  SPA      SPG  A SP         PAG    +Y+
Sbjct: 1532 TPGG--PGFSPANSESTGFSPAYSPAWSPQPQSPGSPANSPYIPS-----PAGPMSPSYS 1584

Query: 209  PASPAYMATSPGM----GYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASP 367
            PASP+Y+  SP      GYSP++P+ + +SPGYSP    YSPTSPS      P +   SP
Sbjct: 1585 PASPSYLPASPATPQSPGYSPTSPSYSPTSPGYSPASPSYSPTSPSY----SPTSPSYSP 1640

Query: 368  QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1641 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1691

 Score =  102 bits (253), Expect = 2e-20
 Identities = 63/152 (41%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1691 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1737

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SPQSP Y P SP+Y+      +
Sbjct: 1738 PTSPSYSPTSPSYSPSSPKYSPTSPSY----SPTSPSYSPQSPSYSPGSPSYSPSSPKYS 1793

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SPN+ + SSP Y P S
Sbjct: 1794 PTSPSYSPTSPSYSPTSPNF-SPSSPTYSPAS 1824

 Score =  100 bits (249), Expect = 6e-20
 Identities = 65/156 (41%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1698 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1744

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
            P++P+ + SSP YSP    YSPTSPS   +     P +   SP SP Y PTSP+Y+   P
Sbjct: 1745 PTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSP 1804

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                 + N +SPSSP YSP SP+Y + +SP Y P S
Sbjct: 1805 SYSPTSPN-FSPSSPTYSPASPSY-SPTSPKYSPSS 1838

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/154 (40%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP++        +  + +Y+P SP+Y   SP   YS
Sbjct: 1733 SPSYSPT---SPSYSPTSPSYSPSSPKY--------SPTSPSYSPTSPSYSPQSP--SYS 1779

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P +P+ + SSP Y   SP YSPTSPS         P++   SP SP Y PTSP Y+    
Sbjct: 1780 PGSPSYSPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYS---- 1835

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               ++  YSP+SP YSP SP Y+ A SP Y P S
Sbjct: 1836 --PSSPKYSPTSPTYSPTSPKYSPA-SPTYSPTS 1866

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG--- 193
            SP  S    +   T    +P        +P  SP SP Y+  SP +  G           
Sbjct: 1733 SPSYSPTSPSYSPTSPSYSPSSPKYSPTSPSYSPTSPSYSPQSPSYSPGSPSYSPSSPKY 1792

Query: 194  ---AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPG---YSPTSPS---VG 331
               + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSP+     
Sbjct: 1793 SPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTS 1852

Query: 332  ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
             +  PA+   SP SP Y P+SP Y+         + YSP+SP+YSP SP+Y+  S
Sbjct: 1853 PKYSPASPTYSPTSPKYSPSSPTYSPTSP---KGSTYSPTSPSYSPTSPSYSPTS 1904

 Score = 86.7 bits (213), Expect = 9e-16
 Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 9/153 (5%)
 Frame = +2

Query: 89   SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 268
            SP+   +P+M+P + G    +P  G G+  G  G + A + ++    A SP     P +P
Sbjct: 1507 SPSQSMSPQMTPWNQG---ATPMHGSGMTPGGPGFSPANSESTGFSPAYSPAWSPQPQSP 1563

Query: 269  ALAVSSP-------GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
                +SP         SP YSP SPS        A  A+PQSPGY PTSP+Y+   PG  
Sbjct: 1564 GSPANSPYIPSPAGPMSPSYSPASPSY-----LPASPATPQSPGYSPTSPSYSPTSPGYS 1618

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             A+ + YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1619 PASPS-YSPTSPSYSPTSPSY-SPTSPSYSPTS 1649

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +P  SPASP Y+  SP++        +  +  Y+P SP Y  TSP   YS
Sbjct: 1810 SPNFSPS---SPTYSPASPSYSPTSPKY--------SPSSPKYSPTSPTYSPTSPK--YS 1856

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
            P++P  + +SP YSP    YSPTSP  G+   P +   SP SP Y PTSP
Sbjct: 1857 PASPTYSPTSPKYSPSSPTYSPTSPK-GSTYSPTSPSYSPTSPSYSPTSP 1905

 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S A  +   T  + +P        +P  SP SP Y+  SP +        +  +  
Sbjct: 1817 SPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTY--------SPTSPK 1868

Query: 203  YAPASPAYMATSP-GMGYSPSTPALAVSSPGYSPGYSPTSPSVG 331
            Y+P+SP Y  TSP G  YSP++P+ + +SP YSP    TSP +G
Sbjct: 1869 YSPSSPTYSPTSPKGSTYSPTSPSYSPTSPSYSP----TSPGMG 1908

[21][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
            RepID=Q9BMP3_MONBE
          Length = 1743

 Score =  111 bits (278), Expect = 3e-23
 Identities = 75/183 (40%), Positives = 101/183 (55%), Gaps = 11/183 (6%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRM--TPGRSPAGR--FTP---RMSPASPGYAAMSPRFG 163
            ++ A +SP   S       +PG    +PG SPA    FTP     SP SP Y+  SP  G
Sbjct: 1507 SSPAGYSPTSPSYSPT---SPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVG 1563

Query: 164  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY----SPGYSPTSPSVG 331
            G      +  + +Y+P+SPAY A SP   YSP++P+ + +SP      SPGYSPTSP   
Sbjct: 1564 GAQSPSYSPTSPSYSPSSPAYNAQSPA--YSPTSPSYSPTSPNVKSPTSPGYSPTSPGYS 1621

Query: 332  ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQ 511
                P++   SP SP Y PTSP+Y+        +  YSP+SP+YSP SPNY + +SP+Y 
Sbjct: 1622 ----PSSPSYSPTSPNYSPTSPSYS------PTSPNYSPTSPSYSPTSPNY-SPTSPSYS 1670

Query: 512  PPS 520
            P S
Sbjct: 1671 PTS 1673

 Score =  111 bits (277), Expect = 4e-23
 Identities = 80/210 (38%), Positives = 105/210 (50%), Gaps = 43/210 (20%)
 Frame = +2

Query: 20   FSPIMSSADAAG---------RATPGRMTPG----------------RSPAGRF--TPRM 118
            FSP+++ A + G         ++  G M+PG                 SPAG    +P  
Sbjct: 1460 FSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSPTSPSY 1519

Query: 119  SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-------------YSP 259
            SP SPG +  SP F      G    +  Y+P SP+Y  TSP +G             YSP
Sbjct: 1520 SPTSPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSP 1579

Query: 260  STPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
            S+PA    SP YSP    YSPTSP+V +   P  GY SP SPGY P+SP+Y+        
Sbjct: 1580 SSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSP--GY-SPTSPGYSPSSPSYS------PT 1630

Query: 431  ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +  YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1631 SPNYSPTSPSYSPTSPNY-SPTSPSYSPTS 1659

 Score =  107 bits (267), Expect = 5e-22
 Identities = 69/173 (39%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            +SP   S         G  +P  SP    +P  SP+SP Y A SP +             
Sbjct: 1548 YSPTSPSYSPTSPNVGGAQSPSYSPT---SPSYSPSSPAYNAQSPAYSPTSPSYSPTSPN 1604

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYA 361
              +P SP Y  TSPG  YSPS+P+ + +SP YSP    YSPTSP+         P +   
Sbjct: 1605 VKSPTSPGYSPTSPG--YSPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNY 1662

Query: 362  SPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            SP SP Y PTSP Y+   P     + N YSP+SP+YSP SPNY + +SP+Y P
Sbjct: 1663 SPTSPSYSPTSPNYSPTSPSYSPTSPN-YSPTSPSYSPTSPNY-SPTSPSYSP 1713

 Score =  101 bits (252), Expect = 3e-20
 Identities = 65/180 (36%), Positives = 91/180 (50%), Gaps = 12/180 (6%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGP 184
            S+SP   +   A   +    +P  SP+       +P  SP SP Y+  SP        G 
Sbjct: 1554 SYSPTSPNVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSPGY 1613

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GP 346
            +  +  Y+P+SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSP+         P
Sbjct: 1614 SPTSPGYSPSSPSYSPTSPN--YSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSP 1671

Query: 347  AAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +   SP SP Y PTSP Y+   P     + N YSP+SP+YSP +   +  +SP Y P S
Sbjct: 1672 TSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPN-YSPTSPSYSPTANGTSGPTSPGYSPTS 1730

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 65/171 (38%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            ++SP   S            +PG SP    +P  SP+SP Y+  SP +        +  +
Sbjct: 1590 AYSPTSPSYSPTSPNVKSPTSPGYSPT---SPGYSPSSPSYSPTSPNY--------SPTS 1638

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
             +Y+P SP Y  TSP   YSP++P  + +SP YSP    YSPTSPS      P +   SP
Sbjct: 1639 PSYSPTSPNYSPTSPS--YSPTSPNYSPTSPSYSPTSPNYSPTSPSYS----PTSPNYSP 1692

Query: 368  QSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
             SP Y PTSP Y+   P     A     P+SP YSP SP Y + +SP Y P
Sbjct: 1693 TSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGY-SPTSPGYSP 1742

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 76/179 (42%), Positives = 95/179 (53%), Gaps = 23/179 (12%)
 Frame = +2

Query: 53   GRATP---GRMTP----------GRSPAGRFTPRMSPA-------SPGYAAMSPRFGGGL 172
            G ATP   G MTP          G++P G F+P ++ A       SPG  A SP  GG +
Sbjct: 1430 GNATPFGMGGMTPQNASSPYFGAGQTPIGGFSPVVAGAFSPGGMLSPGGIAQSP--GGAM 1487

Query: 173  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGG 343
              G A   G  + ASP Y  +SP  GYSP++P+ + +SPG SP   G+SP SP   A   
Sbjct: 1488 SPGGAMSPGVVS-ASPFYDPSSPA-GYSPTSPSYSPTSPGMSPTSPGFSPASP---AGFT 1542

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P + + SP SP Y PTSP         A +  YSP+SP+YSP SP Y  A SPAY P S
Sbjct: 1543 PTSPHYSPTSPSYSPTSPNVGG-----AQSPSYSPTSPSYSPSSPAY-NAQSPAYSPTS 1595

[22][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
            RepID=A9V5W6_MONBE
          Length = 1307

 Score =  111 bits (278), Expect = 3e-23
 Identities = 75/183 (40%), Positives = 101/183 (55%), Gaps = 11/183 (6%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRM--TPGRSPAGR--FTP---RMSPASPGYAAMSPRFG 163
            ++ A +SP   S       +PG    +PG SPA    FTP     SP SP Y+  SP  G
Sbjct: 1071 SSPAGYSPTSPSYSPT---SPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVG 1127

Query: 164  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY----SPGYSPTSPSVG 331
            G      +  + +Y+P+SPAY A SP   YSP++P+ + +SP      SPGYSPTSP   
Sbjct: 1128 GAQSPSYSPTSPSYSPSSPAYNAQSPA--YSPTSPSYSPTSPNVKSPTSPGYSPTSPGYS 1185

Query: 332  ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQ 511
                P++   SP SP Y PTSP+Y+        +  YSP+SP+YSP SPNY + +SP+Y 
Sbjct: 1186 ----PSSPSYSPTSPNYSPTSPSYS------PTSPNYSPTSPSYSPTSPNY-SPTSPSYS 1234

Query: 512  PPS 520
            P S
Sbjct: 1235 PTS 1237

 Score =  111 bits (277), Expect = 4e-23
 Identities = 80/210 (38%), Positives = 105/210 (50%), Gaps = 43/210 (20%)
 Frame = +2

Query: 20   FSPIMSSADAAG---------RATPGRMTPG----------------RSPAGRF--TPRM 118
            FSP+++ A + G         ++  G M+PG                 SPAG    +P  
Sbjct: 1024 FSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSPTSPSY 1083

Query: 119  SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-------------YSP 259
            SP SPG +  SP F      G    +  Y+P SP+Y  TSP +G             YSP
Sbjct: 1084 SPTSPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSP 1143

Query: 260  STPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
            S+PA    SP YSP    YSPTSP+V +   P  GY SP SPGY P+SP+Y+        
Sbjct: 1144 SSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSP--GY-SPTSPGYSPSSPSYS------PT 1194

Query: 431  ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +  YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1195 SPNYSPTSPSYSPTSPNY-SPTSPSYSPTS 1223

 Score =  107 bits (267), Expect = 5e-22
 Identities = 69/173 (39%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            +SP   S         G  +P  SP    +P  SP+SP Y A SP +             
Sbjct: 1112 YSPTSPSYSPTSPNVGGAQSPSYSPT---SPSYSPSSPAYNAQSPAYSPTSPSYSPTSPN 1168

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYA 361
              +P SP Y  TSPG  YSPS+P+ + +SP YSP    YSPTSP+         P +   
Sbjct: 1169 VKSPTSPGYSPTSPG--YSPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNY 1226

Query: 362  SPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            SP SP Y PTSP Y+   P     + N YSP+SP+YSP SPNY + +SP+Y P
Sbjct: 1227 SPTSPSYSPTSPNYSPTSPSYSPTSPN-YSPTSPSYSPTSPNY-SPTSPSYSP 1277

 Score =  101 bits (252), Expect = 3e-20
 Identities = 65/180 (36%), Positives = 91/180 (50%), Gaps = 12/180 (6%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGP 184
            S+SP   +   A   +    +P  SP+       +P  SP SP Y+  SP        G 
Sbjct: 1118 SYSPTSPNVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSPGY 1177

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GP 346
            +  +  Y+P+SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSP+         P
Sbjct: 1178 SPTSPGYSPSSPSYSPTSPN--YSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSP 1235

Query: 347  AAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +   SP SP Y PTSP Y+   P     + N YSP+SP+YSP +   +  +SP Y P S
Sbjct: 1236 TSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPN-YSPTSPSYSPTANGTSGPTSPGYSPTS 1294

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 65/171 (38%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            ++SP   S            +PG SP    +P  SP+SP Y+  SP +        +  +
Sbjct: 1154 AYSPTSPSYSPTSPNVKSPTSPGYSPT---SPGYSPSSPSYSPTSPNY--------SPTS 1202

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
             +Y+P SP Y  TSP   YSP++P  + +SP YSP    YSPTSPS      P +   SP
Sbjct: 1203 PSYSPTSPNYSPTSPS--YSPTSPNYSPTSPSYSPTSPNYSPTSPSYS----PTSPNYSP 1256

Query: 368  QSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
             SP Y PTSP Y+   P     A     P+SP YSP SP Y + +SP Y P
Sbjct: 1257 TSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGY-SPTSPGYSP 1306

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 76/179 (42%), Positives = 95/179 (53%), Gaps = 23/179 (12%)
 Frame = +2

Query: 53   GRATP---GRMTP----------GRSPAGRFTPRMSPA-------SPGYAAMSPRFGGGL 172
            G ATP   G MTP          G++P G F+P ++ A       SPG  A SP  GG +
Sbjct: 994  GNATPFGMGGMTPQNASSPYLGAGQTPIGGFSPVVAGAFSPGGMLSPGGIAQSP--GGAM 1051

Query: 173  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGG 343
              G A   G  + ASP Y  +SP  GYSP++P+ + +SPG SP   G+SP SP   A   
Sbjct: 1052 SPGGAMSPGVVS-ASPFYDPSSPA-GYSPTSPSYSPTSPGMSPTSPGFSPASP---AGFT 1106

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P + + SP SP Y PTSP         A +  YSP+SP+YSP SP Y  A SPAY P S
Sbjct: 1107 PTSPHYSPTSPSYSPTSPNVGG-----AQSPSYSPTSPSYSPSSPAY-NAQSPAYSPTS 1159

[23][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
            RepID=UPI000186501C
          Length = 1956

 Score =  111 bits (277), Expect = 4e-23
 Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 15/183 (8%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATP------GRMTPGRSPAG-RFTPR----MSPASPGYAAMSPRFG 163
            ++SP   S  + G A+P      G M+P  SPA   + PR    M+P SPGY+  SP + 
Sbjct: 1564 AWSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPRSPGGMTPQSPGYSPTSPSY- 1622

Query: 164  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGA 334
                   +  + +Y+PASP Y  TSP   YSP++P+ + +SP YSP    YSPTSPS   
Sbjct: 1623 -------SPTSPSYSPASPNYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-- 1671

Query: 335  RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQ 511
               P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y 
Sbjct: 1672 --SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYS 1728

Query: 512  PPS 520
            P S
Sbjct: 1729 PTS 1731

 Score =  102 bits (255), Expect = 1e-20
 Identities = 64/154 (41%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1668 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1714

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGG---PAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y+    
Sbjct: 1715 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPKYSPTSPSYSPTSPSYS---- 1770

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               A+  YSP+SP+YSP SPNY +  SP+Y P S
Sbjct: 1771 --PASPSYSPTSPSYSPSSPNY-SPQSPSYSPSS 1801

 Score =  101 bits (252), Expect = 3e-20
 Identities = 63/151 (41%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1710 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPNYTPTSPK--YS 1756

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P++   SPQSP Y P+SP+Y+ P +   
Sbjct: 1757 PTSPSYSPTSPSYSPASPSYSPTSPSY----SPSSPNYSPQSPSYSPSSPSYS-PSSPNP 1811

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            ++  Y+P+SP YSP SP Y + SSP Y P S
Sbjct: 1812 SSPKYTPTSPKYSPSSPKY-SPSSPKYSPTS 1841

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 63/160 (39%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y   SP++        +  + +Y+PASP+Y  TSP   YS
Sbjct: 1731 SPSYSPT---SPSYSPTSPNYTPTSPKY-SPTSPSYSPTSPSYSPASPSYSPTSP--SYS 1784

Query: 257  PSTPALAVSSPGY---SPGYSPTSPS--------VGARGGPAAGYASPQSPGYVPTSPAY 403
            PS+P  +  SP Y   SP YSP+SP+           +  P++   SP SP Y PTSP Y
Sbjct: 1785 PSSPNYSPQSPSYSPSSPSYSPSSPNPSSPKYTPTSPKYSPSSPKYSPSSPKYSPTSPTY 1844

Query: 404  ARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +      + A+  YSPS+P Y+P SP Y+ A SP Y P S
Sbjct: 1845 SPSSAKYSPASPSYSPSTPKYTPTSPKYSPA-SPTYTPTS 1883

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 61/158 (38%), Positives = 88/158 (55%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +P  SPA   +P  SP SP Y+  SP +        +  + +Y+P+SP+Y  +SP     
Sbjct: 1766 SPSYSPA---SPSYSPTSPSYSPSSPNY--------SPQSPSYSPSSPSYSPSSPNPSSP 1814

Query: 251  -YSPSTPALAVSSPGYSPG---YSPTSPSVG---ARGGPAAGYASPQSPGYVPTSPAYAR 409
             Y+P++P  + SSP YSP    YSPTSP+     A+  PA+   SP +P Y PTSP Y+ 
Sbjct: 1815 KYTPTSPKYSPSSPKYSPSSPKYSPTSPTYSPSSAKYSPASPSYSPSTPKYTPTSPKYSP 1874

Query: 410  PG-TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               T    +  YSP+SP+Y+P +P Y + +SP Y P S
Sbjct: 1875 ASPTYTPTSPKYSPTSPSYTPDTPKY-SPTSPKYSPTS 1911

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 77/171 (45%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTP-GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            A FSP  +S DA+G      M+P G SPA   TP  SP SPG A  SP       GGP  
Sbjct: 1543 AGFSPSAAS-DASG------MSPAGYSPAWSPTPG-SPGSPGPA--SPYIPSP--GGPM- 1589

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
             + +Y+PASPAYM  SPG G +P            SPGYSPTSPS      P +   SP 
Sbjct: 1590 -SPSYSPASPAYMPRSPG-GMTPQ-----------SPGYSPTSPSYS----PTSPSYSPA 1632

Query: 371  SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1682

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 67/184 (36%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S   A  +     +P  SP+   +P  SP SP Y+  SP +       P   +
Sbjct: 1761 SYSPTSPSYSPASPSY-SPTSPSYSPS---SPNYSPQSPSYSPSSPSYSPS---SPNPSS 1813

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGA---RGGPAAGY 358
              Y P SP Y  +SP   YSPS+P  + +SP YSP    YSP SPS      +  P +  
Sbjct: 1814 PKYTPTSPKYSPSSPK--YSPSSPKYSPTSPTYSPSSAKYSPASPSYSPSTPKYTPTSPK 1871

Query: 359  ASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAY 508
             SP SP Y PTSP Y+    +       YSP+SP YSP SP Y+  S         +P Y
Sbjct: 1872 YSPASPTYTPTSPKYSPTSPSYTPDTPKYSPTSPKYSPTSPTYSPTSPKGSTYSPTTPGY 1931

Query: 509  QPPS 520
             P S
Sbjct: 1932 SPAS 1935

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 67/164 (40%), Positives = 88/164 (53%), Gaps = 22/164 (13%)
 Frame = +2

Query: 95   AGRFTPRMSP-ASPGYAAMSPRFGG----GLGGGPAGGAGAYAPA-------------SP 220
            AG  T  MSP  +P     +P +GG    GLG G   GA  ++P+             SP
Sbjct: 1504 AGSPTASMSPQMTPWQQVGTPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSP 1563

Query: 221  AYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
            A+  T PG   SP   +  + SPG   SP YSP SP+   R   + G  +PQSPGY PTS
Sbjct: 1564 AWSPT-PGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPR---SPGGMTPQSPGYSPTS 1619

Query: 395  PAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P+Y+   P    A+ N YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1620 PSYSPTSPSYSPASPN-YSPTSPSYSPTSPSY-SPTSPSYSPTS 1661

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S+ +   ++P   +P  +P    +P+ SP+SP Y+  SP++        +  +
Sbjct: 1796 SYSP---SSPSYSPSSPNPSSPKYTPT---SPKYSPSSPKYSPSSPKYSP-TSPTYSPSS 1848

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
              Y+PASP+Y  ++P   Y+P++P  + +SP Y   SP YSPTSPS      P     SP
Sbjct: 1849 AKYSPASPSYSPSTPK--YTPTSPKYSPASPTYTPTSPKYSPTSPSYT----PDTPKYSP 1902

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
             SP Y PTSP Y+         + YSP++P YSP SP Y+  S
Sbjct: 1903 TSPKYSPTSPTYSPTSP---KGSTYSPTTPGYSPASPTYSPES 1942

[24][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2C
          Length = 1888

 Score =  111 bits (277), Expect = 4e-23
 Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP       GG
Sbjct: 1554 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-------GG 1606

Query: 182  PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
                + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS    
Sbjct: 1607 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1663

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1664 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1721

Query: 515  PS 520
             S
Sbjct: 1722 TS 1723

 Score =  107 bits (268), Expect = 4e-22
 Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
            A FSP  +S DA+G       +PG SPA   TP  SP SPG +         AMSP +  
Sbjct: 1543 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1594

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
                      G Y P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS    
Sbjct: 1595 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1649

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1650 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1707

Query: 515  PS 520
             S
Sbjct: 1708 TS 1709

 Score = 97.4 bits (241), Expect = 5e-19
 Identities = 62/151 (41%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1653 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1699

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+ P +  +
Sbjct: 1700 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPNYS-PSSPTS 1754

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                Y+P+SP+YSP SP Y   +SP Y P S
Sbjct: 1755 PK--YTPTSPSYSPSSPEY-TPTSPKYSPTS 1782

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 59/149 (39%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +P+ +P SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1744 SPNYSPSSPTSPKYTPTSPSYSPSSPEYTP-TSPKYSPTSPKYSPTSPKYSPTSPT--YS 1800

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P+TP  + +SP YSP    Y+PTSP    +  P +   SP SP Y PTSP Y+       
Sbjct: 1801 PTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTSPKYSPTSPTYS---PTSP 1853

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1854 KGSTYSPTSPGYSPTSPTY-SLTSPAISP 1881

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
            I ++    G A P  M  G   SP G  +P M+P                          
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1545

Query: 125  ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
                       SPGY+ A SP  G     GP+       GGA   +Y+P SPAY   SPG
Sbjct: 1546 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1605

Query: 245  MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
             GY+P +P+ + +SP Y   SP YSPTSP+      P +   SP SP Y PTSP+Y+   
Sbjct: 1606 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1660

Query: 416  TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1661 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 59/156 (37%), Positives = 81/156 (51%), Gaps = 8/156 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-Y 253
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP     
Sbjct: 1702 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPNYSPS 1750

Query: 254  SPSTPALAVSSPGYSPG---YSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPG 415
            SP++P    +SP YSP    Y+PTSP       +  P +   SP SP Y PT+P Y+   
Sbjct: 1751 SPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTS 1810

Query: 416  -TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             T    + VY+P+SP YSP SP Y + +SP Y P S
Sbjct: 1811 PTYSPTSPVYTPTSPKYSPTSPTY-SPTSPKYSPTS 1845

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 52/152 (34%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +      T  + +P        +P+ SP SP Y+  +P+               
Sbjct: 1761 SPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK--------------- 1805

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   Y+P++P  + +SP Y   SP YSPTSP+        + Y SP S
Sbjct: 1806 YSPTSPTYSPTSP--VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTY-SPTS 1862

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
            PGY PTSP              YS +SPA SP
Sbjct: 1863 PGYSPTSP-------------TYSLTSPAISP 1881

[25][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 8 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1C
          Length = 1719

 Score =  111 bits (277), Expect = 4e-23
 Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP       GG
Sbjct: 1485 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-------GG 1537

Query: 182  PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
                + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS    
Sbjct: 1538 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1594

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1595 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1652

Query: 515  PS 520
             S
Sbjct: 1653 TS 1654

 Score =  101 bits (251), Expect = 4e-20
 Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1584 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1630

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+  RP   
Sbjct: 1631 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1686

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              + + YSP+SP+YSP SPNY    SP Y P S
Sbjct: 1687 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1717

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1598 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1644

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP  P Y PTSP+Y+   P   
Sbjct: 1645 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1700

Query: 422  VAAANVYSPSSPAYSPFSPN 481
              + N Y+P SP YSP SPN
Sbjct: 1701 PTSPN-YTPMSPNYSPTSPN 1719

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
 Frame = +2

Query: 251  YSPSTPALAVSSPGYSPGYSPT-SPSVGARG--GPAAGY----ASPQSPGYVPTSPAY-- 403
            Y    P     + G+SPGYSP  SP+ G+ G  GP++ Y        SP Y PTSPAY  
Sbjct: 1473 YGMEIPTNIPDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEP 1532

Query: 404  ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              PG     +  YSP+SP+YSP SP+Y+  S      SP+Y P S
Sbjct: 1533 RSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1577

[26][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 7 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1B
          Length = 1858

 Score =  111 bits (277), Expect = 4e-23
 Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP       GG
Sbjct: 1485 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-------GG 1537

Query: 182  PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
                + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS    
Sbjct: 1538 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1594

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1595 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1652

Query: 515  PS 520
             S
Sbjct: 1653 TS 1654

 Score =  102 bits (253), Expect = 2e-20
 Identities = 66/159 (41%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1584 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1630

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+  RP   
Sbjct: 1631 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1686

Query: 422  VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              + + YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1687 PTSPS-YSPTSPSYSPTSPNYTPMSPNYSPTSPSYSPTS 1724

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 65/170 (38%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP +   +    +  + +
Sbjct: 1661 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY-TPMSPNYSPTSPS 1719

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSPS+P    +SP Y   SP YSPTSP    +  P +   SP +
Sbjct: 1720 YSPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1773

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+    V    +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1774 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1822

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 61/153 (39%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1633 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPN--YS 1679

Query: 257  PSTPALAVSSPGYSP---GYSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPG- 415
            PS P    +SP YSP    YSPTSP+   +     P +   SP SP Y PTSP+Y+    
Sbjct: 1680 PSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTSPSYSPTSPKYTPTSPSYSPSSP 1739

Query: 416  TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
                 +  YSP+SP YSP SP Y + +SP Y P
Sbjct: 1740 EYTPTSPKYSPTSPKYSPTSPKY-SPTSPTYSP 1771

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1710 SPNYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1754

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1755 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1808

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1809 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1851

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
 Frame = +2

Query: 251  YSPSTPALAVSSPGYSPGYSPT-SPSVGARG--GPAAGY----ASPQSPGYVPTSPAY-- 403
            Y    P     + G+SPGYSP  SP+ G+ G  GP++ Y        SP Y PTSPAY  
Sbjct: 1473 YGMEIPTNIPDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEP 1532

Query: 404  ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              PG     +  YSP+SP+YSP SP+Y+  S      SP+Y P S
Sbjct: 1533 RSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1577

[27][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B17
          Length = 1788

 Score =  111 bits (277), Expect = 4e-23
 Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP       GG
Sbjct: 1554 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-------GG 1606

Query: 182  PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
                + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS    
Sbjct: 1607 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1663

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1664 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1721

Query: 515  PS 520
             S
Sbjct: 1722 TS 1723

 Score =  107 bits (268), Expect = 4e-22
 Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
            A FSP  +S DA+G       +PG SPA   TP  SP SPG +         AMSP +  
Sbjct: 1543 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1594

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
                      G Y P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS    
Sbjct: 1595 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1649

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1650 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1707

Query: 515  PS 520
             S
Sbjct: 1708 TS 1709

 Score =  101 bits (251), Expect = 4e-20
 Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1653 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1699

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+  RP   
Sbjct: 1700 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1755

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              + + YSP+SP+YSP SPNY    SP Y P S
Sbjct: 1756 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1786

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
            I ++    G A P  M  G   SP G  +P M+P                          
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1545

Query: 125  ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
                       SPGY+ A SP  G     GP+       GGA   +Y+P SPAY   SPG
Sbjct: 1546 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1605

Query: 245  MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
             GY+P +P+ + +SP Y   SP YSPTSP+      P +   SP SP Y PTSP+Y+   
Sbjct: 1606 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1660

Query: 416  TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1661 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1667 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1713

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP  P Y PTSP+Y+   P   
Sbjct: 1714 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1769

Query: 422  VAAANVYSPSSPAYSPFSPN 481
              + N Y+P SP YSP SPN
Sbjct: 1770 PTSPN-YTPMSPNYSPTSPN 1788

[28][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
          Length = 1935

 Score =  111 bits (277), Expect = 4e-23
 Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP       GG
Sbjct: 1520 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-------GG 1572

Query: 182  PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
                + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS    
Sbjct: 1573 YTPQSPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-- 1630

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1631 --PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1687

Query: 515  PS 520
             S
Sbjct: 1688 TS 1689

 Score =  104 bits (259), Expect = 4e-21
 Identities = 75/180 (41%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
            A FSP  +S DA+G       +PG SPA   TP  SP SPG ++   P  GG +      
Sbjct: 1509 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM------ 1554

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------GYSPTSPSVGARG 340
             + +Y+P SPAY   SPG GY+P +P+ + +SP YSP           YSPTSPS     
Sbjct: 1555 -SPSYSPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYS--- 1609

Query: 341  GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             P +   SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1610 -PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1661

 Score =  103 bits (257), Expect = 7e-21
 Identities = 67/175 (38%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P  S     +P  SP SP Y+  SP +        +  + +
Sbjct: 1577 SPSYSPTSPSYSPTSPSYSPTSSNYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1628

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1629 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1682

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
            P Y PTSP+Y+        +  YSP+SP+YSP SPNY+  S      SP+Y P S
Sbjct: 1683 PSYSPTSPSYS------PTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTS 1731

 Score =  100 bits (248), Expect = 8e-20
 Identities = 74/182 (40%), Positives = 98/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1451 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1510

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1511 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1568

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     ++N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1569 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSSN-YSPTSPSYSPTSPSY-SPTSPSYSP 1624

Query: 515  PS 520
             S
Sbjct: 1625 TS 1626

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 63/152 (41%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1682 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1728

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1729 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1784

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP Y P S
Sbjct: 1785 PSSPSYSPSSPSYSPTSPKY-TPTSPPYSPSS 1815

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 62/154 (40%), Positives = 78/154 (50%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1766 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--PYS 1812

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            PS+P    +SP +   SP YSPTSP     G    P     SP SP Y PTSP Y     
Sbjct: 1813 PSSPEYTPTSPKFSPTSPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSPVY----- 1867

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1868 -TPTSPKYSPTSPTYSPTSPQY-SPTSPTYSPTS 1899

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 61/167 (36%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP   P    +P  +P SP ++  SP+               
Sbjct: 1787 SPSYSPSSPSYSPTSPKYTPTSPPYSPSSPEYTPTSPKFSPTSPK--------------- 1831

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  T P   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1832 YSPTSPKYSPTGPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1885

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1886 PQYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1928

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 66/181 (36%), Positives = 93/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1761 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1807

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---PGYSPTSPSVGARGGPAAGYAS 364
            +  Y+P+SP Y  TSP   +SP++P  + +SP YS   P YSPT+P    +  P +   S
Sbjct: 1808 SPPYSPSSPEYTPTSP--KFSPTSPKYSPTSPKYSPTGPTYSPTTP----KYSPTSPTYS 1861

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1862 PTSPVYTPTSPKYS------PTSPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1915

Query: 518  S 520
            S
Sbjct: 1916 S 1916

[29][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5YGY9_SORBI
          Length = 1857

 Score =  110 bits (275), Expect = 6e-23
 Identities = 76/195 (38%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
 Frame = +2

Query: 2    INATASFSPIMSSADAAGRATPGRMTP---GRSPAGR----------FTPRMSPASPGYA 142
            IN  ASFSP +     +   +PG  +P   G SP+             +P  SPASP Y+
Sbjct: 1520 INTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFTPEKGYSPLSPSYSPASPSYS 1579

Query: 143  AMSPRFGGGLGGGPAGGAGA--YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GY 307
              SP +     G P     +  Y+P SP Y  TSP   YSP++P+ + +SP YSP    Y
Sbjct: 1580 PTSPSY---TPGSPTYSPTSPNYSPTSPTYSPTSPS--YSPTSPSYSPTSPSYSPTSPSY 1634

Query: 308  SPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFS 475
            SPTSPS         P +   SP SP Y PTSPAY+      +  +  YSP+SP+YSP S
Sbjct: 1635 SPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1694

Query: 476  PNYAAASSPAYQPPS 520
            P+Y + +SP+Y P S
Sbjct: 1695 PSY-SPTSPSYSPTS 1708

 Score =  105 bits (263), Expect = 1e-21
 Identities = 67/173 (38%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S A  +   T    TPG       +P  SP SP Y+  SP +        +  + +
Sbjct: 1568 SPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSY--------SPTSPS 1619

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSP+         P +   S
Sbjct: 1620 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYS 1677

Query: 365  PQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SPAY P S
Sbjct: 1678 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTS 1729

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 68/179 (37%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP+ S    A   T    +P  SP    +P  SP SP Y+  SP +        +  + +
Sbjct: 1652 SPVYSPTSPAYSPT----SPAYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPS 1696

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP   GYSPTSPS            SP S
Sbjct: 1697 YSPTSPSYSPTSPS--YSPTSPSYSPTSPAYSPTSPGYSPTSPSY-----------SPTS 1743

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPS----------SPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y       + ++ YSPS          SP+YSP SP Y + +SP+Y  PS
Sbjct: 1744 PSYSPTSPSYNPSSAKYSPSHAYSPSSPRMTPYSQTSPSYSPTSPTY-SPTSPSYSQPS 1801

 Score = 86.7 bits (213), Expect = 9e-16
 Identities = 62/168 (36%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
 Frame = +2

Query: 74   MTPGRSPAGRFTPRMSPASPGY--------------AAMSPRFGGGLGGGPAGGAGAYAP 211
            MTP RSP           SP Y              A+ SP + G +   P    G Y+P
Sbjct: 1488 MTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSP-YVGHMAFSPFPSPGGYSP 1546

Query: 212  ASPAYMATSPGM----GYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPG 379
            +S  Y  +SP      GYSP +P+ + +SP YS    PTSPS      P +   SP SP 
Sbjct: 1547 SSGGYSPSSPVFTPEKGYSPLSPSYSPASPSYS----PTSPSY----TPGSPTYSPTSPN 1598

Query: 380  YVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            Y PTSP Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1599 YSPTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1645

 Score = 80.9 bits (198), Expect = 5e-14
 Identities = 61/159 (38%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S      A     +PG SP    +P  SP SP Y+  SP +           +
Sbjct: 1710 SYSPTSPSYSPTSPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPSYNPS--SAKYSPS 1763

Query: 197  GAYAPASPA---YMATSPGMGYSPSTPALAVSSPGYS---PGYSPTSPSVGARGGPAAGY 358
             AY+P+SP    Y  TSP   YSP++P  + +SP YS   P YSPTSP     GGP    
Sbjct: 1764 HAYSPSSPRMTPYSQTSPS--YSPTSPTYSPTSPSYSQPSPSYSPTSP-FNTSGGP---- 1816

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
                SP Y PTSP Y+  G+       YSP++P YSP S
Sbjct: 1817 ----SPDYSPTSPNYSPSGS-------YSPTAPGYSPSS 1844

[30][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
            RepID=A4S3M0_OSTLU
          Length = 1646

 Score =  110 bits (275), Expect = 6e-23
 Identities = 79/183 (43%), Positives = 95/183 (51%), Gaps = 27/183 (14%)
 Frame = +2

Query: 53   GRATPGR---MTPGR---------------SPAGRFTP-----RMSPASPGYAAMSPRFG 163
            G  TPG    MTPGR               SP G  +P       SP S G A  SP   
Sbjct: 1458 GSRTPGHGGMMTPGRDGTPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMA-FSPGMS 1516

Query: 164  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGA 334
             G  GG +  + AY+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP+   
Sbjct: 1517 PGGFGGYSPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAY-- 1572

Query: 335  RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQ 511
               P +   SP SP Y PTSPAY+      +  +  YSP+SPAYSP SP Y + +SPAY 
Sbjct: 1573 --SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYS 1629

Query: 512  PPS 520
            P S
Sbjct: 1630 PTS 1632

 Score =  101 bits (251), Expect = 4e-20
 Identities = 63/145 (43%), Positives = 80/145 (55%), Gaps = 8/145 (5%)
 Frame = +2

Query: 77   TPGRSPAG-----RFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP 241
            +PG SP G       +P  SP SP Y+  SP +        +  + AY+P SPAY  TSP
Sbjct: 1512 SPGMSPGGFGGYSPTSPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSP 1563

Query: 242  GMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
               YSP++PA + +SP YSP    YSPTSP+      P +   SP SP Y PTSPAY+  
Sbjct: 1564 A--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTSPAYSPTSPAYS-- 1615

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYA 487
                  +  YSP+SPAYSP SP Y+
Sbjct: 1616 ----PTSPAYSPTSPAYSPTSPAYS 1636

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1548 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1599

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSP 313
            Y+P SPAY  TSP   YSP++PA + +SP Y   SP YSP
Sbjct: 1600 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSP 1637

[31][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5ACI7_CANAL
          Length = 1728

 Score =  110 bits (275), Expect = 6e-23
 Identities = 75/174 (43%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            AT+ FS   +S  + G  +PG    G SP    +P  SP SP YA  SP +        A
Sbjct: 1520 ATSPFSYGYNSITSPGYTSPGY---GYSPT---SPSYSPTSPSYAPTSPAYSP-TSPSYA 1572

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
              + AY+P SP+Y  TSP   YSP++PA + +SP YSP    YSPTSPS      P +  
Sbjct: 1573 PTSPAYSPTSPSYAPTSPA--YSPTSPAYSPTSPSYSPTSPQYSPTSPSYS----PTSPS 1626

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSPAY+        +  YSP+SP+YSP SP Y + +SP+Y P S
Sbjct: 1627 YSPTSPSYSPTSPAYS------PTSPSYSPTSPSYSPTSPQY-SPTSPSYSPTS 1673

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 61/150 (40%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP++        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1589 SPAYSPT---SPAYSPTSPSYSPTSPQY--------SPTSPSYSPTSPSYSPTSPS--YS 1635

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++PA + +SP YSP    YSPTSP       P +   SP SP Y PTSP+Y+      +
Sbjct: 1636 PTSPAYSPTSPSYSPTSPSYSPTSPQYS----PTSPSYSPTSPQYSPTSPSYSPTSPQYS 1691

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              +  YSP+SP YSP SP Y +  SP Y+P
Sbjct: 1692 PTSPQYSPTSPQYSPTSPQY-SPGSPGYEP 1720

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 70/180 (38%), Positives = 87/180 (48%), Gaps = 7/180 (3%)
 Frame = +2

Query: 2    INATASFSPI----MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 169
            I+A A FSPI    M+  +  G  + G      SPA       SP S GY +++      
Sbjct: 1486 IDAGAGFSPIHIAQMNEGNIGGLTSYGGQPT--SPAAT-----SPFSYGYNSIT------ 1532

Query: 170  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG 340
                           SP Y  TSPG GYSP++P+ + +SP Y   SP YSPTSPS     
Sbjct: 1533 ---------------SPGY--TSPGYGYSPTSPSYSPTSPSYAPTSPAYSPTSPSYA--- 1572

Query: 341  GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             P +   SP SP Y PTSPAY             SP+SPAYSP SP+Y + +SP Y P S
Sbjct: 1573 -PTSPAYSPTSPSYAPTSPAY-------------SPTSPAYSPTSPSY-SPTSPQYSPTS 1617

 Score = 86.7 bits (213), Expect = 9e-16
 Identities = 59/158 (37%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            A  SP  S    A   T    +P        +P  SP SP Y+  SP +        +  
Sbjct: 1586 APTSPAYSPTSPAYSPTSPSYSPTSPQYSPTSPSYSPTSPSYSPTSPSY--------SPT 1637

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
            + AY+P SP+Y  TSP   YSP++P  + +SP YSP    YSPTSPS      P +   S
Sbjct: 1638 SPAYSPTSPSYSPTSPS--YSPTSPQYSPTSPSYSPTSPQYSPTSPSYS----PTSPQYS 1691

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
            P SP Y PTSP Y+        +  YSP SP Y P  P
Sbjct: 1692 PTSPQYSPTSPQYS------PTSPQYSPGSPGYEPEPP 1723

[32][TOP]
>UniRef100_Q4QZ03 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum tuberosum
           RepID=Q4QZ03_SOLTU
          Length = 361

 Score =  110 bits (274), Expect = 8e-23
 Identities = 73/170 (42%), Positives = 91/170 (53%), Gaps = 3/170 (1%)
 Frame = +2

Query: 14  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
           A FSP +      G A     +PG SP+   +P  SP+SPGY+  SP             
Sbjct: 104 AQFSPYVG-----GMAFSPTSSPGYSPS---SPGYSPSSPGYSPTSP------------- 142

Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
              Y+P SP Y  TSPG  YSP++P  + SSPGYSP    YSPTSPS      P +   S
Sbjct: 143 --GYSPTSPGYSPTSPG--YSPTSPTYSPSSPGYSPTSPAYSPTSPSY----SPTSPSYS 194

Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           P S  Y PTSP+Y+        + +YSP+SPAYSP SP Y + +SPAY P
Sbjct: 195 PTSSSYSPTSPSYS------PTSPIYSPTSPAYSPTSPAY-SPTSPAYSP 237

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 68/179 (37%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S    +   T    +P  S     +P  SP SP Y+  SP +        +  + A
Sbjct: 176 SPAYSPTSPSYSPTSPSYSPTSSSYSPTSPSYSPTSPIYSPTSPAY--------SPTSPA 227

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG----ARGGPAAGYA 361
           Y+P SPAY  T P   YSP+ P+ + +SP YSP    YSPTSPS      A    + GY+
Sbjct: 228 YSPTSPAYSPTLPS--YSPTLPSYSPTSPSYSPTSPSYSPTSPSYSPTFPAYSPTSPGYS 285

Query: 362 ------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                 SP SP Y PTSP+Y  P    + +  YSP+SP  SP SP   + SSP+Y P S
Sbjct: 286 PTSPSYSPTSPSYSPTSPSY-NPSARYSPSLAYSPTSPKLSPSSP--YSPSSPSYSPTS 341

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 70/168 (41%), Positives = 83/168 (49%), Gaps = 19/168 (11%)
 Frame = +2

Query: 74  MTPGRSPAGRFTPRMSPASPGYAA-----MSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
           MTPGRSP           SP Y       MSP         P  G  A++P S      S
Sbjct: 69  MTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFS--PYVGGMAFSPTS------S 120

Query: 239 PGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPA 400
           PG  YSPS+P  + SSPGY   SPGYSPTSP          P +   SP SPGY PTSPA
Sbjct: 121 PG--YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 178

Query: 401 YARPG--------TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           Y+           +    ++ YSP+SP+YSP SP Y + +SPAY P S
Sbjct: 179 YSPTSPSYSPTSPSYSPTSSSYSPTSPSYSPTSPIY-SPTSPAYSPTS 225

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 65/176 (36%), Positives = 88/176 (50%), Gaps = 12/176 (6%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------GP 184
           SP  S   ++   T    +P        +P  SP SP Y+  SP +   L          
Sbjct: 190 SPSYSPTSSSYSPTSPSYSPTSPIYSPTSPAYSPTSPAYSPTSPAYSPTLPSYSPTLPSY 249

Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GP 346
           +  + +Y+P SP+Y  TSP   YSP+ PA + +SPGYSP    YSPTSPS         P
Sbjct: 250 SPTSPSYSPTSPSYSPTSPS--YSPTFPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNP 307

Query: 347 AAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           +A Y+   S  Y PTSP  +       ++  YSP+SP+YSP SP+Y + SSP Y P
Sbjct: 308 SARYSP--SLAYSPTSPKLSPSSPYSPSSPSYSPTSPSYSPTSPSY-SPSSPTYSP 360

[33][TOP]
>UniRef100_A6SI63 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10
            RepID=A6SI63_BOTFB
          Length = 1742

 Score =  110 bits (274), Expect = 8e-23
 Identities = 81/207 (39%), Positives = 110/207 (53%), Gaps = 38/207 (18%)
 Frame = +2

Query: 14   ASFSPIMSSAD--AAGRATP----GRMTP----GRSPAGRFTP-----------RMSPAS 130
            A FSPI S+     +G AT     G M+P     RSP G ++P             SP+S
Sbjct: 1521 AQFSPIQSAGSDTPSGFATEYSGLGGMSPYAAGSRSPGGGYSPTSPFNASPSSPNFSPSS 1580

Query: 131  PGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA-LAVSSPGYSP-- 301
            PGY+  SP  GGG   G A     ++P SPA+  TSP   YSP++P+ ++ +SP YSP  
Sbjct: 1581 PGYSPTSPMMGGGASPGYAVSP-RFSPVSPAFTPTSPA--YSPTSPSFVSPTSPSYSPTS 1637

Query: 302  -GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-----------RPGTVVAAAN-VY 442
              YSPTSP++   G P +   SP SP Y PTSP Y+            PG+ ++  + VY
Sbjct: 1638 PNYSPTSPNI--HGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGSGLSPTSPVY 1695

Query: 443  SPSSPAYSPFSPNYAA-ASSPAYQPPS 520
            SP+SP +SP SP +   ++SP Y P S
Sbjct: 1696 SPTSPNWSPSSPQHQGNSTSPKYSPTS 1722

 Score =  102 bits (253), Expect = 2e-20
 Identities = 67/172 (38%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            NA+ S SP  S +      T   M  G SP    +PR SP SP +   SP +        
Sbjct: 1568 NASPS-SPNFSPSSPGYSPTSPMMGGGASPGYAVSPRFSPVSPAFTPTSPAYSPTSPSFV 1626

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS-VGARGGPAA 352
            +  + +Y+P SP Y  TSP +  SP++P+ + +SP Y   SP YSPTSP+  G +  P +
Sbjct: 1627 SPTSPSYSPTSPNYSPTSPNIHGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGS 1686

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAAN----VYSPSSPAYSPFSPNYAAAS 496
            G  SP SP Y PTSP ++ P +     N     YSP+SP+YSP SPN++  S
Sbjct: 1687 G-LSPTSPVYSPTSPNWS-PSSPQHQGNSTSPKYSPTSPSYSPTSPNFSPTS 1736

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGL---GGGP 184
            S+SP   +         G  T P  SP    +P  SP SP Y+  SP + G     G G 
Sbjct: 1632 SYSPTSPNYSPTSPNIHGSPTSPSYSPT---SPSYSPTSPNYSPTSPNYAGNKVSPGSGL 1688

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG 331
            +  +  Y+P SP +  +SP    + ++P  + +SP YSP    +SPTSP  G
Sbjct: 1689 SPTSPVYSPTSPNWSPSSPQHQGNSTSPKYSPTSPSYSPTSPNFSPTSPRGG 1740

[34][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
            RepID=Q99368_SOYBN
          Length = 977

 Score =  109 bits (273), Expect = 1e-22
 Identities = 76/209 (36%), Positives = 103/209 (49%), Gaps = 37/209 (17%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRM--TPGRSPAGR----FTPRMSPASPGYAAMSPRFGG 166
            ++ A FSP +     +  ++PG    +PG SP+       +P  SP SPGY+  SP +  
Sbjct: 709  SSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSP 768

Query: 167  GLGG----GPAGG---------AGAYAPASPAYMATSPGMG------------YSPSTPA 271
               G     PA           + AY+P SPAY +TSP               YSP++P+
Sbjct: 769  SSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPTSPS 828

Query: 272  LAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAA 433
             +++SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y       + +
Sbjct: 829  YSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPS 888

Query: 434  NVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              YSPSSP  SP SPNY + +SP+Y P S
Sbjct: 889  LAYSPSSPRLSPTSPNY-SPTSPSYSPTS 916

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 62/175 (35%), Positives = 81/175 (46%), Gaps = 19/175 (10%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A +S SP  S    +   T    +P        +P  SP SP Y+  SP +       PA
Sbjct: 800  AYSSTSPAYSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSPSYSPT---SPA 856

Query: 188  GG--AGAYAPASPAYMAT-----------SPGMGYSPSTPALAVSSPGY---SPGYSPTS 319
                + +Y+P SP+Y  T           SP + YSPS+P L+ +SP Y   SP YSPTS
Sbjct: 857  YSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTS 916

Query: 320  PSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
            PS         P++ Y S  SP Y PTSP +       + +  YSPS P YSP S
Sbjct: 917  PSYSPSSPTYSPSSPYNSGVSPDYSPTSPQF-------SPSAGYSPSQPGYSPSS 964

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 55/142 (38%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG- 193
            S+SP   S      A     +P  SP    +P  SP SP Y   S ++   L   P+   
Sbjct: 842  SYSPTSPSYSPTSPAY-SPTSPSYSPT---SPSYSPTSPSYNPQSAKYSPSLAYSPSSPR 897

Query: 194  ----AGAYAPASPAYMATSPGMGYSPSTPALAVSSP---GYSPGYSPTSPSVGARGGPAA 352
                +  Y+P SP+Y  TSP   YSPS+P  + SSP   G SP YSPTSP       P+A
Sbjct: 898  LSPTSPNYSPTSPSYSPTSPS--YSPSSPTYSPSSPYNSGVSPDYSPTSPQFS----PSA 951

Query: 353  GYASPQSPGYVPTSPAYARPGT 418
            GY SP  PGY P+S +   P T
Sbjct: 952  GY-SPSQPGYSPSSTSQDTPQT 972

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 47/128 (36%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
 Frame = +2

Query: 152 PRFGGGLGGGPAGGAGAYAPA---SPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSP 322
           P +  GL  G   GA  Y      SP+Y+  SP +  SPS+ A               SP
Sbjct: 671 PSYTDGLDFGIMSGATPYHEGTMMSPSYLL-SPNLRLSPSSDA-------------QFSP 716

Query: 323 SVGARGGPAAGYASPQSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
            VG        ++   SPGY P+SP Y  + PG    +   YSP+SP YSP SP Y + S
Sbjct: 717 YVGGMA-----FSPSSSPGYSPSSPGYSPSSPGYSPTSPG-YSPTSPGYSPTSPTY-SPS 769

Query: 497 SPAYQPPS 520
           SP Y P S
Sbjct: 770 SPGYSPTS 777

[35][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9WN64_CANDC
          Length = 1735

 Score =  109 bits (273), Expect = 1e-22
 Identities = 72/174 (41%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            AT+ FS   ++A + G A+PG    G SP    +P  SP SP Y+  SP +        +
Sbjct: 1520 ATSPFSFGYNTATSPGYASPGY---GYSPT---SPSYSPTSPSYSPTSPSY--------S 1565

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
              + +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +  
Sbjct: 1566 PTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPS 1619

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SPGY PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP Y P S
Sbjct: 1620 YSPTSPGYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPQYSPTS 1666

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 13/161 (8%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSPG  YS
Sbjct: 1582 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPG--YS 1628

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y+    
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSP 1688

Query: 419  VVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  +  YSP+SP YSP SP Y+  S      SP Y+P S
Sbjct: 1689 QYSPTSPSYSPTSPQYSPTSPQYSPTSPRYSPGSPGYEPKS 1729

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 71/177 (40%), Positives = 90/177 (50%), Gaps = 4/177 (2%)
 Frame = +2

Query: 2    INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY-AAMSPRFGGGLGG 178
            I+A A FSPI ++    G    G  + G  P        SP S GY  A SP        
Sbjct: 1486 IDAGAGFSPIHTAQVNEG-IVGGLTSYGGQPTS--PAATSPFSFGYNTATSP-------- 1534

Query: 179  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPA 349
            G A     Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS        
Sbjct: 1535 GYASPGYGYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY------- 1585

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP Y P S
Sbjct: 1586 ----SPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPGYSPTS 1631

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 56/138 (40%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SPGY+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1610 SPSYSPT---SPSYSPTSPGYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1656

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P  + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+      +
Sbjct: 1657 PTSPQYSPTSPSYSPTSPQYSPTSPSYS----PTSPQYSPTSPSYSPTSPQYSPTSPQYS 1712

Query: 428  AANV-YSPSSPAYSPFSP 478
              +  YSP SP Y P SP
Sbjct: 1713 PTSPRYSPGSPGYEPKSP 1730

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T  + +P        +P+ SP SP Y+  SP+               
Sbjct: 1645 SPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQ--------------- 1689

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSP 322
            Y+P SP+Y  TSP   YSP++P  + +SP Y   SPGY P SP
Sbjct: 1690 YSPTSPSYSPTSP--QYSPTSPQYSPTSPRYSPGSPGYEPKSP 1730

[36][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
            RepID=UPI0000F24379
          Length = 1739

 Score =  109 bits (272), Expect = 1e-22
 Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
 Frame = +2

Query: 14   ASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A FSPI ++   D +G  T        S  G+ T   + +   Y + SP FGG +  G  
Sbjct: 1493 AGFSPIHTAQVQDVSGGLT--------SYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYG 1544

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
            G + +Y+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P +  
Sbjct: 1545 GTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAYSPTSPSYSPTSPSY----SPTSPS 1598

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1599 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1652

 Score =  108 bits (270), Expect = 2e-22
 Identities = 71/177 (40%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 178
            +AT+ FS   +S    G  +PG    +P  SP    +P  SP SP Y+  SP +      
Sbjct: 1521 SATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPT---SPSYSPTSPSYSPTSPSY------ 1571

Query: 179  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPA 349
              +  + AY+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P 
Sbjct: 1572 --SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PT 1623

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +   SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1624 SPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1673

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 65/170 (38%), Positives = 86/170 (50%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1568 SPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1626

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1627 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1680

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+      +  + +YSP+SP YSP SP Y +  SP Y P S
Sbjct: 1681 PSYSPTSPQYSPTSPQYSPTSPLYSPTSPQYSPTSPQY-SPGSPEYSPNS 1729

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 56/138 (40%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1610 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1656

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+      +
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPQYSPTSPQYSPTSPLYSPTSPQYS 1712

Query: 428  AANV-YSPSSPAYSPFSP 478
              +  YSP SP YSP SP
Sbjct: 1713 PTSPQYSPGSPEYSPNSP 1730

[37][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
            familiaris RepID=UPI0001951285
          Length = 1969

 Score =  109 bits (272), Expect = 1e-22
 Identities = 73/187 (39%), Positives = 98/187 (52%), Gaps = 18/187 (9%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP  GG     
Sbjct: 1555 SGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP--GGYTPQS 1612

Query: 182  PAGG--AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVG 331
            P+    + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS  
Sbjct: 1613 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1672

Query: 332  ARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASS 499
                   P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +S
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTS 1731

Query: 500  PAYQPPS 520
            P+Y P S
Sbjct: 1732 PSYSPTS 1738

 Score =  106 bits (264), Expect = 1e-21
 Identities = 74/174 (42%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
            A FSP  +S DA+G       +PG SPA   TP  SP SPG ++   P  GG +      
Sbjct: 1544 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM------ 1589

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYA 361
             + +Y+P SPAY   SPG GY+P +P+ + +SP YSP    YSPTSP+      P +   
Sbjct: 1590 -SPSYSPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS----PTSPSY 1643

Query: 362  SPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1644 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1696

 Score =  105 bits (263), Expect = 1e-21
 Identities = 67/172 (38%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTS 1640

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP
Sbjct: 1641 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP 1694

Query: 368  QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1695 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1745

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 61/154 (39%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1675 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1721

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGG---PAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSP+         P +   SP SP Y PTSP Y     
Sbjct: 1722 PTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSP 1781

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  +  SP+SP+YSP SP+Y + SSP Y P S
Sbjct: 1782 NYSPTSPNSPTSPSYSPTSPSY-SPSSPRYTPQS 1814

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 64/161 (39%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1703 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPN--YS 1749

Query: 257  PSTPALAVSSPGYSP---GYSPTSP---------SVGARGGPAAGYASPQSPGYVPTSPA 400
            PS P    +SP YSP    YSPTSP         S  +   P +   SP SP Y P+SP 
Sbjct: 1750 PSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTSPNSPTSPSYSPTSPSYSPSSPR 1809

Query: 401  YA-RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            Y  +  T   ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1810 YTPQSPTYTPSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1849

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1689 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1735

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    Y+PTSPS         P +   +P SP Y PTSP      +
Sbjct: 1736 PTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTSPNSPTSPS 1795

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                +  YSPSSP Y+P SP Y   SSP+Y P S
Sbjct: 1796 YSPTSPSYSPSSPRYTPQSPTY-TPSSPSYSPSS 1828

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 64/177 (36%), Positives = 85/177 (48%), Gaps = 11/177 (6%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA-------AMSPRFGGGLGGG 181
            SP  S    +   T    +P R      +P  SP SP Y+        MSP +       
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTSPNS 1790

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAA 352
            P   + +Y+P SP+Y  +SP   Y+P +P    SSP Y   SP YSPTSP    +  P +
Sbjct: 1791 PT--SPSYSPTSPSYSPSSP--RYTPQSPTYTPSSPSYSPSSPSYSPTSP----KYTPTS 1842

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP SP Y PTSP Y+      +  +  YSP+SP YSP +P Y + +SP Y P S
Sbjct: 1843 PSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY-SPTSPTYSPTS 1898

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1795 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1841

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1842 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1895

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1896 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1949

Query: 518  S 520
            S
Sbjct: 1950 S 1950

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1821 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1865

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1866 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1919

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1920 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1962

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 60/159 (37%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM--- 247
            +P  SP    +P  SP SP Y+  SP +             +Y+P SP+Y  TSP     
Sbjct: 1724 SPSYSPT---SPSYSPTSPSYSPTSPNYSPSRPNYTPTSP-SYSPTSPSYSPTSPNYTPM 1779

Query: 248  --GYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAY 403
               YSP++P  + +SP YSP    YSP+SP    +     P++   SP SP Y PTSP Y
Sbjct: 1780 SPNYSPTSPN-SPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1838

Query: 404  ARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                     +  YSPSSP Y+P SP Y + +SP Y P S
Sbjct: 1839 ------TPTSPSYSPSSPEYTPTSPKY-SPTSPKYSPTS 1870

[38][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
            RepID=C1EA31_9CHLO
          Length = 1720

 Score =  109 bits (272), Expect = 1e-22
 Identities = 76/193 (39%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
 Frame = +2

Query: 2    INATASFSPIMSSADAAGRATP------GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 163
            ++ TA  SP   S   + + T       G  +PG SP    +P  SP SP Y+  SP + 
Sbjct: 1493 LSPTAHMSPFDDSMRFSPQGTDYGSHAGGGQSPGYSPT---SPAYSPTSPAYSPTSPAYS 1549

Query: 164  GGLGGGPAGG--AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSP 313
                  PA    + AY+P SPAY  TSP        YSP++PA + +SP YSP    YSP
Sbjct: 1550 PT---SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1606

Query: 314  TSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPN 481
            TSP+         P +   SP SP Y PTSPAY+      +  +  YSP+SPAYSP SP 
Sbjct: 1607 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQ 1666

Query: 482  YAAASSPAYQPPS 520
            Y + +SP Y P S
Sbjct: 1667 Y-SPTSPQYSPTS 1678

 Score =  105 bits (261), Expect = 3e-21
 Identities = 68/170 (40%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1538 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1589

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP+      P +   SP S
Sbjct: 1590 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTS 1643

Query: 374  PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSPAY+      +  +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1644 PAYSPTSPAYSPTSPAYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1692

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 64/170 (37%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1552 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1603

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP+      P +   SP S
Sbjct: 1604 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTS 1657

Query: 374  PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+      +  +  YSP+SP YSP S   + A +P   P S
Sbjct: 1658 PAYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSLGLSDADAPTRSPTS 1707

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 69/161 (42%), Positives = 86/161 (53%), Gaps = 8/161 (4%)
 Frame = +2

Query: 62   TPGR-MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG---GAGAYAPASPAYM 229
            TPGR +TPGR  A   +  +SP     A MSP F   +   P G   G+ A    SP   
Sbjct: 1474 TPGRGITPGREGAMSPSFLLSPT----AHMSP-FDDSMRFSPQGTDYGSHAGGGQSP--- 1525

Query: 230  ATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
                  GYSP++PA + +SP Y   SP YSPTSP+      P +   SP SP Y PTSPA
Sbjct: 1526 ------GYSPTSPAYSPTSPAYSPTSPAYSPTSPAY----SPTSPAYSPTSPAYSPTSPA 1575

Query: 401  YARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            Y+      +  +  YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 1576 YSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 1615

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 61/154 (39%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1573 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1624

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP       P +   SP S
Sbjct: 1625 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPQYS----PTSPQYSPTS 1678

Query: 374  PGYVPTSPAYARP--GTVVAAANVYSPSSPAYSP 469
            P Y PTSP Y+    G   A A   SP+SP YSP
Sbjct: 1679 PQYSPTSPQYSPTSLGLSDADAPTRSPTSPQYSP 1712

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 49/134 (36%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1594 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1645

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSP-----SVGARGGPAAGY 358
            Y+P SPAY  TSP   YSP++P  + +SP YSP    YSPTSP     S+G     A   
Sbjct: 1646 YSPTSPAYSPTSPA--YSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSLGLSDADAPT- 1702

Query: 359  ASPQSPGYVPTSPA 400
             SP SP Y P++ A
Sbjct: 1703 RSPTSPQYSPSTEA 1716

[39][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3GID7_PICST
          Length = 1739

 Score =  109 bits (272), Expect = 1e-22
 Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
 Frame = +2

Query: 14   ASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A FSPI ++   D +G  T        S  G+ T   + +   Y + SP FGG +  G  
Sbjct: 1493 AGFSPIHTAQVQDVSGGLT--------SYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYG 1544

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
            G + +Y+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P +  
Sbjct: 1545 GTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAYSPTSPSYSPTSPSY----SPTSPS 1598

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1599 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1652

 Score =  108 bits (270), Expect = 2e-22
 Identities = 71/177 (40%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 178
            +AT+ FS   +S    G  +PG    +P  SP    +P  SP SP Y+  SP +      
Sbjct: 1521 SATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPT---SPSYSPTSPSYSPTSPSY------ 1571

Query: 179  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPA 349
              +  + AY+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P 
Sbjct: 1572 --SPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PT 1623

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +   SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1624 SPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1673

 Score =  100 bits (250), Expect = 5e-20
 Identities = 65/170 (38%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1568 SPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1619

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1620 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1673

Query: 374  PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y+      +  +  YSP+SP+YSP SP Y + +SP Y P S
Sbjct: 1674 PSYSPTSPSYSPTSPQYSPTSPQYSPTSPSYSPTSPQY-SPTSPQYSPGS 1722

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 58/143 (40%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1610 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1656

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPQYSPTSPQYSPTSPSYS------P 1706

Query: 428  AANVYSPSSPAYSPFSPNYAAAS 496
             +  YSP+SP YSP SP Y+  S
Sbjct: 1707 TSPQYSPTSPQYSPGSPEYSPNS 1729

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1631 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1677

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSP 397
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y P SP
Sbjct: 1678 PTSPSYSPTSPQYSPTSPQYSPTSPSYSPTSPQYSPTSPQYSPGSPEYSPNSP 1730

[40][TOP]
>UniRef100_UPI000051AA8E PREDICTED: similar to DNA-directed RNA polymerase II largest
           subunit (RPB1) n=1 Tax=Apis mellifera
           RepID=UPI000051AA8E
          Length = 452

 Score =  108 bits (271), Expect = 2e-22
 Identities = 81/201 (40%), Positives = 104/201 (51%), Gaps = 30/201 (14%)
 Frame = +2

Query: 8   ATASFSPIMS---------SADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMS 151
           AT S SP M+          A +   A    MTPG    SP+G      S  SP Y+A S
Sbjct: 47  ATPSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSG--ASDASGLSPAYSAYS 104

Query: 152 PRFGGGLGGGP---------AGGAG-AYAPASPAYMATSPGM-----GYSPSTPALAVSS 286
           P+ G     GP         AGGA  +Y+P SPAY+ TSP +      YSP++P  + +S
Sbjct: 105 PQPGSPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTS 164

Query: 287 PGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
           P YSP    YSPTSPS      P +   SP SP Y PTSP+Y+        +  YSP+SP
Sbjct: 165 PNYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSP 214

Query: 458 AYSPFSPNYAAASSPAYQPPS 520
           +YSP SP+Y + +SP+Y P S
Sbjct: 215 SYSPTSPSY-SPTSPSYSPTS 234

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/175 (38%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S    A   T   +TP        +P  SP SP Y+  SP +        +  + +
Sbjct: 129 SPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYSPTSPSYSP-TSPSYSPTSPS 187

Query: 203 YAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
           Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS      P +  
Sbjct: 188 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPS 243

Query: 359 ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY  A SP+Y P S
Sbjct: 244 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPA-SPSYSPTS 297

 Score =  100 bits (248), Expect = 8e-20
 Identities = 64/169 (37%), Positives = 85/169 (50%), Gaps = 21/169 (12%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 227 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 273

Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
           P++P+ + SSP Y   SP YSPTSPS         PA+   SP SP Y PTSP+Y+    
Sbjct: 274 PTSPSYSPSSPNYTPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSP 333

Query: 419 VVAAAN---------------VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             A  +                YSP+SP+YSP SP + A+ S  Y P S
Sbjct: 334 SFAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSS 382

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 70/183 (38%), Positives = 96/183 (52%), Gaps = 15/183 (8%)
 Frame = +2

Query: 8   ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
           A+ S+SP   S + ++ + +P   +P  SP+   +P+ SP SP Y+  SP F        
Sbjct: 289 ASPSYSPTSPSYSPSSPQYSPA--SPSYSPS---SPKYSPTSPSYSPTSPSF-------- 335

Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY-----------SPGYSPTSPSVG 331
           AG +  Y PASP Y  TSP   YSP++P+ + SSP +           SP YSPTSP+  
Sbjct: 336 AGTSPQYTPASPTYSPTSPT--YSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYS 393

Query: 332 ARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
                  P++   SP SP Y PTSP+Y+        +  YSP  P YSP SP Y+ A SP
Sbjct: 394 PTSPQYSPSSTKYSPTSPTYTPTSPSYS------PTSPTYSPPVPGYSPTSPTYSPA-SP 446

Query: 503 AYQ 511
           AY+
Sbjct: 447 AYE 449

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP+   +P+ SPASP Y+  SP++        +  + +Y+P SP++  TSP   Y+
Sbjct: 297 SPSYSPS---SPQYSPASPSYSPSSPKY--------SPTSPSYSPTSPSFAGTSPQ--YT 343

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGG----PAAGYASPQSPGYVPTSPAYARPG 415
           P++P  + +SP YSP    YSP+SP   A G     P++   SP SP Y PTSP Y+   
Sbjct: 344 PASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSS 403

Query: 416 TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
           T       YSP+SP Y+P SP+Y + +SP Y PP
Sbjct: 404 T------KYSPTSPTYTPTSPSY-SPTSPTYSPP 430

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 66/162 (40%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  +  Y PASP+Y  TSP   YS
Sbjct: 255 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPSSPNYTPASPSYSPTSPS--YS 301

Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYA---SPQSPGYVPTSPAYARPGT 418
           PS+P  + +SP YSP    YSPTSPS        AG +   +P SP Y PTSP Y+    
Sbjct: 302 PSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPTYSPTSPTYS---- 357

Query: 419 VVAAANVYSPSSP--------AYSPFSPNYAAASSPAYQPPS 520
               +  YSPSSP         YSP SPNY + +SP Y P S
Sbjct: 358 --PTSPSYSPSSPQHTASGSTRYSPSSPNY-SPTSPTYSPTS 396

[41][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=B9FZ51_ORYSJ
          Length = 1526

 Score =  108 bits (271), Expect = 2e-22
 Identities = 72/182 (39%), Positives = 98/182 (53%), Gaps = 14/182 (7%)
 Frame = +2

Query: 17   SFSPIMS---SADAAGRATPGRMT----PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG 175
            +FSP+ S   +  + G  +P        PG SP    +P  SPASP Y+  SP +     
Sbjct: 1205 AFSPVPSPGYTPSSGGGYSPSSPVYSPGPGYSPT---SPSYSPASPSYSPTSPSY----- 1256

Query: 176  GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG-- 340
                 G+  Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS       
Sbjct: 1257 ---TPGSPTYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1311

Query: 341  -GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSPAY+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1312 YSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1370

Query: 515  PS 520
             S
Sbjct: 1371 TS 1372

 Score =  104 bits (259), Expect = 4e-21
 Identities = 67/173 (38%), Positives = 89/173 (51%), Gaps = 7/173 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S A  +   T    TPG       +P  SP SP Y+  SP               +
Sbjct: 1239 SPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSP---------------S 1283

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSP+         P +   S
Sbjct: 1284 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYS 1341

Query: 365  PQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SPAY P S
Sbjct: 1342 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTS 1393

 Score =  102 bits (253), Expect = 2e-20
 Identities = 68/172 (39%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP+ S    A   T    +P  SP    +P  SP SP Y+  SP +        +  + +
Sbjct: 1316 SPVYSPTSPAYSPT----SPAYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPS 1360

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP   GYSPTSPS            SP S
Sbjct: 1361 YSPTSPSYSPTSPS--YSPTSPSYSPTSPAYSPTSPGYSPTSPSY-----------SPTS 1407

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPF---SPNYAAASSPAYQPPS 520
            P Y PTSP+Y       + ++ YSPSSP  SP+   SPNY + +SP Y P S
Sbjct: 1408 PNYSPTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNY-SPTSPTYSPTS 1458

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/170 (39%), Positives = 86/170 (50%), Gaps = 21/170 (12%)
 Frame = +2

Query: 74   MTPGRSPAGRFTPRMSPASPGY-------------AAMSPRFGG-------GLGGGPAGG 193
            MTP RSP           SP Y             A  SP  GG         G  P+ G
Sbjct: 1160 MTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAFSPVPSPGYTPSSG 1219

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQS 373
             G Y+P+SP Y   SPG GYSP++P+ + +SP YS    PTSPS      P +   SP S
Sbjct: 1220 GG-YSPSSPVY---SPGPGYSPTSPSYSPASPSYS----PTSPSY----TPGSPTYSPTS 1267

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1268 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1316

 Score = 80.5 bits (197), Expect = 7e-14
 Identities = 61/159 (38%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S      A     +PG SP    +P  SP SP Y+  SP +           +
Sbjct: 1374 SYSPTSPSYSPTSPAY-SPTSPGYSPT---SPSYSPTSPNYSPTSPSYNPS--SAKYSPS 1427

Query: 197  GAYAPASPA---YMATSPGMGYSPSTPALAVSSPGYS---PGYSPTSPSVGARGGPAAGY 358
             AY+P+SP    Y  TSP   YSP++P  + +SP YS   P YSPTSP   + GGP    
Sbjct: 1428 HAYSPSSPRLSPYSQTSPN--YSPTSPTYSPTSPSYSQPSPSYSPTSPYTTS-GGP---- 1480

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
                SP Y PTSP Y+  G+       YSP++P YSP S
Sbjct: 1481 ----SPDYSPTSPNYSPSGS-------YSPTAPGYSPSS 1508

[42][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
            castellanii RepID=O00820_ACACA
          Length = 1569

 Score =  108 bits (271), Expect = 2e-22
 Identities = 70/165 (42%), Positives = 90/165 (54%), Gaps = 17/165 (10%)
 Frame = +2

Query: 71   RMTPGRSPAGRFTPRM--------------SPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
            RM+PG +PA  ++P +              SP+SP Y+  SP      G  PAG    Y+
Sbjct: 1432 RMSPGATPAASYSPYVDFGEFSPGRGSFSPSPSSPSYSPASP------GYSPAGAG--YS 1483

Query: 209  PASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPG 379
            P+SP Y  +SPG  YSPS+P  + +SPGYSP    YSPTSP             SP SP 
Sbjct: 1484 PSSPGYSPSSPG--YSPSSPGYSPASPGYSPSSPAYSPTSPKY-----------SPASPS 1530

Query: 380  YVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            Y PTSPAY+        +  YSPSSP+YSP SP+Y + +SP+Y P
Sbjct: 1531 YSPTSPAYS------PTSPSYSPSSPSYSPTSPSY-SPTSPSYSP 1568

 Score =  108 bits (270), Expect = 2e-22
 Identities = 75/174 (43%), Positives = 92/174 (52%), Gaps = 18/174 (10%)
 Frame = +2

Query: 53   GRATPGRMTPGRSPAGRFTP---------RMSPASPGYAAMSP-----RFGGGLGG-GPA 187
            G  +PG  TP      R+ P         RMSP +   A+ SP      F  G G   P+
Sbjct: 1403 GATSPGSATPYMGSDERYLPNFFHTTPMYRMSPGATPAASYSPYVDFGEFSPGRGSFSPS 1462

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
              + +Y+PASP Y  +  G GYSPS+P  + SSPGYSP   GYSP SP          GY
Sbjct: 1463 PSSPSYSPASPGY--SPAGAGYSPSSPGYSPSSPGYSPSSPGYSPASP----------GY 1510

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP Y+       A+  YSP+SPAYSP SP+Y + SSP+Y P S
Sbjct: 1511 -SPSSPAYSPTSPKYS------PASPSYSPTSPAYSPTSPSY-SPSSPSYSPTS 1556

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 52/139 (37%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGR----ATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 169
            ++ S+SP       AG     ++PG    +PG SP+   +P  SPASPGY+  SP     
Sbjct: 1464 SSPSYSPASPGYSPAGAGYSPSSPGYSPSSPGYSPS---SPGYSPASPGYSPSSP----- 1515

Query: 170  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPA 349
                      AY+P SP Y   SP   YSP++PA + +    SP YSP+SPS        
Sbjct: 1516 ----------AYSPTSPKYSPASP--SYSPTSPAYSPT----SPSYSPSSPSY------- 1552

Query: 350  AGYASPQSPGYVPTSPAYA 406
                SP SP Y PTSP+Y+
Sbjct: 1553 ----SPTSPSYSPTSPSYS 1567

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            A A +SP   S+     ++PG    +PG SPA   +P  SP+SP Y+  SP++       
Sbjct: 1478 AGAGYSP---SSPGYSPSSPGYSPSSPGYSPA---SPGYSPSSPAYSPTSPKYS------ 1525

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPS 325
            PA  + +Y+P SPAY  TSP   YSPS+P+ + +SP YSP     SPS
Sbjct: 1526 PA--SPSYSPTSPAYSPTSPS--YSPSSPSYSPTSPSYSPTSPSYSPS 1569

[43][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            elegans RepID=RPB1_CAEEL
          Length = 1852

 Score =  108 bits (271), Expect = 2e-22
 Identities = 70/172 (40%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   +P  ++P  SP    +P  SP SP Y+  SP +        +  + +
Sbjct: 1593 SPSYSPTSPAAGQSP--VSPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPS 1639

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
            Y+P SP+Y  TSP   YSPS+P+ + SSP YSP    YSPTSP+         P +   S
Sbjct: 1640 YSPTSPSYSPTSPS--YSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYS 1697

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSP+Y   G    ++  YSPSSP YSP SP+Y + +SP Y P S
Sbjct: 1698 PTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSY-SPTSPQYSPTS 1748

 Score =  105 bits (261), Expect = 3e-21
 Identities = 77/185 (41%), Positives = 95/185 (51%), Gaps = 25/185 (13%)
 Frame = +2

Query: 41   ADAAGRATPGRMTPGR--SPAGRFTPRMSP--------ASPG--YAAMSPRFG--GGLGG 178
            A AA   T G M+PG   SPAG      SP        ASPG    A+SPR    GG+  
Sbjct: 1513 AGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSP 1572

Query: 179  GPAGGAGA--------YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
            G    +          Y+P SP+Y  TSP  G SP +P+ + +SP Y   SP YSPTSPS
Sbjct: 1573 GVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPS 1632

Query: 326  VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                  P +   SP SP Y PTSP+Y+       ++  YSPSSP+YSP SP Y + +SP 
Sbjct: 1633 Y----SPTSPSYSPTSPSYSPTSPSYS------PSSPSYSPSSPSYSPSSPRY-SPTSPT 1681

Query: 506  YQPPS 520
            Y P S
Sbjct: 1682 YSPTS 1686

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 73/196 (37%), Positives = 92/196 (46%), Gaps = 30/196 (15%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +      T    +P        +P  SP SP Y+  SP +  G  GG +  +  
Sbjct: 1665 SPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESG--GGYSPSSPK 1722

Query: 203  YAPASPAYMATSPGMG-----YSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
            Y+P+SP Y  TSP        YSP++P  + SSP Y   SP Y+PTSP    RG  +  Y
Sbjct: 1723 YSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP----RGFSSPQY 1778

Query: 359  ASPQSPGYVPTSPAYA-------------------RPGTVV---AAANVYSPSSPAYSPF 472
             SP SP Y PTSP+Y                    +PGT       +  YSPSSP YSP 
Sbjct: 1779 -SPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPA 1837

Query: 473  SPNYAAASSPAYQPPS 520
            SP+Y + SSP Y P S
Sbjct: 1838 SPSY-SPSSPTYDPNS 1852

[44][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 18 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B27
          Length = 1831

 Score =  108 bits (270), Expect = 2e-22
 Identities = 70/162 (43%), Positives = 92/162 (56%), Gaps = 4/162 (2%)
 Frame = +2

Query: 47   AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
            AAGR+    MTPG +  G  +P  SP SP Y   SP       GG    + +Y+P SP+Y
Sbjct: 1492 AAGRSG---MTPGAA-GGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSY 1540

Query: 227  MATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
              TSP   YSP++P  + +SP Y   SP YSPTSPS      P +   SP SP Y PTSP
Sbjct: 1541 SPTSP--SYSPTSPNYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSP 1594

Query: 398  AYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1595 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1635

 Score =  105 bits (263), Expect = 1e-21
 Identities = 67/172 (38%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1510 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTS 1558

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP
Sbjct: 1559 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP 1612

Query: 368  QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1613 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1663

 Score = 97.4 bits (241), Expect = 5e-19
 Identities = 61/154 (39%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1593 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1639

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGG---PAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSP+         P +   SP SP Y PTSP Y     
Sbjct: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSP 1699

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +    YSPSSP Y+P SP Y + +SP Y P S
Sbjct: 1700 NYSPTPSYSPSSPEYTPTSPKY-SPTSPKYSPTS 1732

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 68/170 (40%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S +  +   TP  M+P  SP    TP  SP+SP Y   SP++        +  
Sbjct: 1679 SYSPTSPSYSPTSPNYTP--MSPNYSP----TPSYSPSSPEYTPTSPKY--------SPT 1724

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
            +  Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   S
Sbjct: 1725 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1778

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P SP Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1779 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1824

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 64/170 (37%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP                
Sbjct: 1649 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPN--------------- 1693

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
            Y P SP Y   SP   YSPS+P    +SP Y   SP YSPTSP    +  P +   SP +
Sbjct: 1694 YTPMSPNY---SPTPSYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1746

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+    V    +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1747 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1795

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
 Frame = +2

Query: 311  PTS-PSVGARG--GPAAGYAS-PQSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPF 472
            PT+ P +GA G  G   G A    SP Y PTSPAY    PG     +  YSP+SP+YSP 
Sbjct: 1484 PTNIPGLGAAGRSGMTPGAAGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPT 1543

Query: 473  SPNYAAAS------SPAYQPPS 520
            SP+Y+  S      SP+Y P S
Sbjct: 1544 SPSYSPTSPNYSPTSPSYSPTS 1565

[45][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 5 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B19
          Length = 1693

 Score =  108 bits (270), Expect = 2e-22
 Identities = 70/162 (43%), Positives = 92/162 (56%), Gaps = 4/162 (2%)
 Frame = +2

Query: 47   AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
            AAGR+    MTPG +  G  +P  SP SP Y   SP       GG    + +Y+P SP+Y
Sbjct: 1478 AAGRSG---MTPGAA-GGAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSY 1526

Query: 227  MATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
              TSP   YSP++P  + +SP Y   SP YSPTSPS      P +   SP SP Y PTSP
Sbjct: 1527 SPTSP--SYSPTSPNYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSP 1580

Query: 398  AYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1621

 Score =  101 bits (251), Expect = 4e-20
 Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1558 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1604

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+  RP   
Sbjct: 1605 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1660

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              + + YSP+SP+YSP SPNY    SP Y P S
Sbjct: 1661 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1691

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1572 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1618

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP  P Y PTSP+Y+   P   
Sbjct: 1619 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1674

Query: 422  VAAANVYSPSSPAYSPFSPN 481
              + N Y+P SP YSP SPN
Sbjct: 1675 PTSPN-YTPMSPNYSPTSPN 1693

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
 Frame = +2

Query: 311  PTS-PSVGARG--GPAAGYAS-PQSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPF 472
            PT+ P +GA G  G   G A    SP Y PTSPAY    PG     +  YSP+SP+YSP 
Sbjct: 1470 PTNIPGLGAAGRSGMTPGAAGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPT 1529

Query: 473  SPNYAAAS------SPAYQPPS 520
            SP+Y+  S      SP+Y P S
Sbjct: 1530 SPSYSPTSPNYSPTSPSYSPTS 1551

[46][TOP]
>UniRef100_C4Y5N3 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
           42720 RepID=C4Y5N3_CLAL4
          Length = 281

 Score =  108 bits (270), Expect = 2e-22
 Identities = 63/139 (45%), Positives = 82/139 (58%), Gaps = 5/139 (3%)
 Frame = +2

Query: 119 SPASP-GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 295
           SP SP  Y   SP FGG    G  G +  Y+P SP+Y  TSP   YSP++P+ + +SP Y
Sbjct: 54  SPTSPFSYGGASPAFGGATSPGYGGTSPTYSPTSPSYSPTSP--SYSPTSPSYSPTSPSY 111

Query: 296 ---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAY 463
              SP YSPTSPS      P +   SP SP Y PTSP+Y+      +  +  YSP+SP+Y
Sbjct: 112 SPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 167

Query: 464 SPFSPNYAAASSPAYQPPS 520
           SP SP+Y + +SP+Y P S
Sbjct: 168 SPTSPSY-SPTSPSYSPTS 185

 Score =  103 bits (257), Expect = 7e-21
 Identities = 69/176 (39%), Positives = 97/176 (55%), Gaps = 6/176 (3%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
           T+ FS   +S    G  +PG    +P  SP    +P  SP SP Y+  SP +        
Sbjct: 56  TSPFSYGGASPAFGGATSPGYGGTSPTYSPT---SPSYSPTSPSYSPTSPSY-------- 104

Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAG 355
           +  + +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P + 
Sbjct: 105 SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSP 158

Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 159 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 213

 Score =  101 bits (252), Expect = 3e-20
 Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S    +   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 80  SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 131

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
           Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 132 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 185

Query: 374 PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
           P Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 186 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 234

 Score =  101 bits (251), Expect = 4e-20
 Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 115 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 161

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
           P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 162 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 217

Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 218 PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 248

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 62/152 (40%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 129 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 175

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
           P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 176 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 231

Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP+YSP SP Y + +SP Y P S
Sbjct: 232 PTSPSYSPTSPSYSPTSPQY-SPTSPQYSPGS 262

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 4/148 (2%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 143 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 189

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
           P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 190 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 245

Query: 428 AANV-YSPSSPAYSPFSPNYAAASSPAY 508
             +  YSP+SP YSP SP+Y +  SP+Y
Sbjct: 246 PTSPQYSPTSPQYSPGSPSY-SPRSPSY 272

 Score = 74.3 bits (181), Expect = 5e-12
 Identities = 55/141 (39%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
 Frame = +2

Query: 104 FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM-ATSPGMGYSPSTPALAV 280
           FT  +S AS    +    +GG           +Y  ASPA+  ATSPG G          
Sbjct: 32  FTANVSDASGSLTS----YGGQPSMTSPTSPFSYGGASPAFGGATSPGYG---------- 77

Query: 281 SSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSP 457
              G SP YSPTSPS      P +   SP SP Y PTSP+Y+      +  +  YSP+SP
Sbjct: 78  ---GTSPTYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 130

Query: 458 AYSPFSPNYAAASSPAYQPPS 520
           +YSP SP+Y + +SP+Y P S
Sbjct: 131 SYSPTSPSY-SPTSPSYSPTS 150

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 199 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 245

Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVG 331
           P++P  + +SP YSPG   YSP SPS G
Sbjct: 246 PTSPQYSPTSPQYSPGSPSYSPRSPSYG 273

[47][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb01 RepID=C1H3Q4_PARBA
          Length = 1748

 Score =  108 bits (270), Expect = 2e-22
 Identities = 78/203 (38%), Positives = 98/203 (48%), Gaps = 34/203 (16%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMT----PG----------RSPAGRFTPRM----------- 118
            ++FSPI      AG  TP   T    PG          RSP G ++P             
Sbjct: 1530 SAFSPIRQ----AGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRY 1585

Query: 119  ------SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 280
                  SP SPG +  SPRF    G  PA  +  +AP SPAY  TSPG   SP++P+ + 
Sbjct: 1586 SPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSP 1643

Query: 281  SSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS 451
            +SPG+   SP YSPTSPS      PA+   SP SP Y PTSPA    G+     +  SP+
Sbjct: 1644 TSPGFSPTSPNYSPTSPSF----SPASPAFSPTSPSYSPTSPALG--GSTGRHLSPTSPT 1697

Query: 452  SPAYSPFSPNYAAASSPAYQPPS 520
            SP Y+P SP ++  S   Y P S
Sbjct: 1698 SPKYTPTSPGWSPTSPETYSPTS 1720

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
 Frame = +2

Query: 23   SPIMSSADAAGRAT-PGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SP+ +    A   T PG      SP+   T P  SP SP Y+  SP F       PA  +
Sbjct: 1615 SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPNYSPTSPSFS------PA--S 1666

Query: 197  GAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSPG----YSPTSPSVGAR 337
             A++P SP+Y  TSP +G          SP++P    +SPG+SP     YSPTSP+    
Sbjct: 1667 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS-- 1724

Query: 338  GGPAAGYASPQSPGYVPTSPAYA 406
             G       P SPGY PTSP ++
Sbjct: 1725 -GSPTSPGGPTSPGYSPTSPTFS 1746

[48][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb18 RepID=C1GHL1_PARBD
          Length = 1746

 Score =  108 bits (270), Expect = 2e-22
 Identities = 78/203 (38%), Positives = 98/203 (48%), Gaps = 34/203 (16%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMT----PG----------RSPAGRFTPRM----------- 118
            ++FSPI      AG  TP   T    PG          RSP G ++P             
Sbjct: 1525 SAFSPIRQ----AGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRY 1580

Query: 119  ------SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 280
                  SP SPG +  SPRF    G  PA  +  +AP SPAY  TSPG   SP++P+ + 
Sbjct: 1581 SPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSP 1638

Query: 281  SSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS 451
            +SPG+   SP YSPTSPS      PA+   SP SP Y PTSPA    G+     +  SP+
Sbjct: 1639 TSPGFSPTSPSYSPTSPSF----SPASPAFSPTSPSYSPTSPALG--GSTGRHLSPTSPT 1692

Query: 452  SPAYSPFSPNYAAASSPAYQPPS 520
            SP Y+P SP ++  S   Y P S
Sbjct: 1693 SPKYTPTSPGWSPTSPETYSPTS 1715

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
 Frame = +2

Query: 23   SPIMSSADAAGRAT-PGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SP+ +    A   T PG      SP+   T P  SP SP Y+  SP F       PA  +
Sbjct: 1610 SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFS------PA--S 1661

Query: 197  GAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSPG----YSPTSPSVGAR 337
             A++P SP+Y  TSP +G          SP++P    +SPG+SP     YSPTSP+    
Sbjct: 1662 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS-- 1719

Query: 338  GGPAAGYASPQSPGYVPTSPAYA 406
             G       P SPGY PTSP ++
Sbjct: 1720 -GSPTSPGGPTSPGYSPTSPTFS 1741

[49][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb03 RepID=C0SE75_PARBP
          Length = 2106

 Score =  108 bits (270), Expect = 2e-22
 Identities = 78/203 (38%), Positives = 98/203 (48%), Gaps = 34/203 (16%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMT----PG----------RSPAGRFTPRM----------- 118
            ++FSPI      AG  TP   T    PG          RSP G ++P             
Sbjct: 1525 SAFSPIRQ----AGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRY 1580

Query: 119  ------SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAV 280
                  SP SPG +  SPRF    G  PA  +  +AP SPAY  TSPG   SP++P+ + 
Sbjct: 1581 SPSSGYSPTSPGMSITSPRFMSSPGFSPA--SPVFAPTSPAYSPTSPGYQQSPTSPSYSP 1638

Query: 281  SSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS 451
            +SPG+   SP YSPTSPS      PA+   SP SP Y PTSPA    G+     +  SP+
Sbjct: 1639 TSPGFSPTSPSYSPTSPSF----SPASPAFSPTSPSYSPTSPALG--GSTGRHLSPTSPT 1692

Query: 452  SPAYSPFSPNYAAASSPAYQPPS 520
            SP Y+P SP ++  S   Y P S
Sbjct: 1693 SPKYTPTSPGWSPTSPETYSPTS 1715

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
 Frame = +2

Query: 23   SPIMSSADAAGRAT-PGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SP+ +    A   T PG      SP+   T P  SP SP Y+  SP F       PA  +
Sbjct: 1610 SPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFS------PA--S 1661

Query: 197  GAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSPG----YSPTSPSVGAR 337
             A++P SP+Y  TSP +G          SP++P    +SPG+SP     YSPTSP+    
Sbjct: 1662 PAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS-- 1719

Query: 338  GGPAAGYASPQSPGYVPTSPAYA 406
             G       P SPGY PTSP ++
Sbjct: 1720 -GSPTSPGGPTSPGYSPTSPTFS 1741

[50][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6JYP8_SCHJY
          Length = 1748

 Score =  108 bits (270), Expect = 2e-22
 Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 6/172 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SP  + A + G  +P  G  +PG SP+   +P  SP+SP Y+  SP +        +  +
Sbjct: 1525 SPYGADARSPGYMSPFSGASSPGFSPS---SPSYSPSSPAYSPTSPSY--------SPTS 1573

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP
Sbjct: 1574 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP 1627

Query: 368  QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1628 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1678

 Score =  108 bits (269), Expect = 3e-22
 Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 4/168 (2%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
            +M+S   A   +PG M+P    +G  +P  SP+SP Y+  SP +        +  + +Y+
Sbjct: 1522 MMASPYGADARSPGYMSPF---SGASSPGFSPSSPSYSPSSPAY--------SPTSPSYS 1570

Query: 209  PASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPG 379
            P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP SP 
Sbjct: 1571 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPS 1624

Query: 380  YVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1625 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1671

 Score =  103 bits (258), Expect = 6e-21
 Identities = 71/173 (41%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            A+FSP++ ++        G M    SP G         SPGY  MSP F G    G +  
Sbjct: 1503 AAFSPLIQTSQDTHDDDYGMMA---SPYGA-----DARSPGY--MSP-FSGASSPGFSPS 1551

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SPAY  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   S
Sbjct: 1552 SPSYSPSSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYS 1605

Query: 365  PQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1606 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1657

 Score =  102 bits (254), Expect = 2e-20
 Identities = 63/153 (41%), Positives = 85/153 (55%), Gaps = 3/153 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1608 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1654

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+   +   
Sbjct: 1655 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPGHSAQN 1710

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
            A    SP SP YSP SP+Y + +SP+Y P S R
Sbjct: 1711 AQGRMSPRSPVYSPTSPSY-SPTSPSYSPTSPR 1742

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1629 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1675

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSV--GARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
            P++P+ + +SP YSP    YSPTSPS   G     A G  SP+SP Y PTSP+Y      
Sbjct: 1676 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPGHSAQNAQGRMSPRSPVYSPTSPSY------ 1729

Query: 422  VAAANVYSPSSPAYSPFSPNYA 487
                   SP+SP+YSP SP Y+
Sbjct: 1730 -------SPTSPSYSPTSPRYS 1744

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 73/189 (38%), Positives = 96/189 (50%), Gaps = 25/189 (13%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGRS--PAGRFTP-RMSP-------ASPGYAAMSPRFGG---- 166
            ++S   +AG  T      G++  P G  TP   SP        SP  AA SP        
Sbjct: 1456 LLSEVPSAGMPTLVGTGMGKAILPEGSATPYERSPLADSGYMGSPDDAAFSPLIQTSQDT 1515

Query: 167  -----GLGGGPAGGAGAYAPA--SPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPT 316
                 G+   P G A A +P   SP   A+SPG  +SPS+P+ + SSP Y   SP YSPT
Sbjct: 1516 HDDDYGMMASPYG-ADARSPGYMSPFSGASSPG--FSPSSPSYSPSSPAYSPTSPSYSPT 1572

Query: 317  SPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAA 493
            SPS      P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + 
Sbjct: 1573 SPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SP 1627

Query: 494  SSPAYQPPS 520
            +SP+Y P S
Sbjct: 1628 TSPSYSPTS 1636

[51][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            isoform 1 n=1 Tax=Hydra magnipapillata
            RepID=UPI00019270BB
          Length = 2041

 Score =  108 bits (269), Expect = 3e-22
 Identities = 74/185 (40%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFT------------PRMSPASPGYAAMSPR 157
            ASFSP   S DA+G +  G  +P  SP    +            P  +  SP Y+  SP 
Sbjct: 1548 ASFSPSAHS-DASGFSPAGGFSPAWSPQDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPA 1606

Query: 158  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSV 328
            F            G Y+P SP Y  TSPG  YSP++P+ + +SPGY   SP YSPTSPS 
Sbjct: 1607 FNPQSPAMSPSSPG-YSPTSPLYSPTSPG--YSPTSPSYSPTSPGYSPTSPSYSPTSPSY 1663

Query: 329  GARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPA 505
                 P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+
Sbjct: 1664 ----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPS 1718

Query: 506  YQPPS 520
            Y P S
Sbjct: 1719 YSPTS 1723

 Score =  107 bits (267), Expect = 5e-22
 Identities = 72/185 (38%), Positives = 97/185 (52%), Gaps = 18/185 (9%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGR-----------MTPGRSPAGRF----TPRMSPASPGYAAMSP 154
            FSP  S  D+    +P             M+P  SP        +P MSP+SPGY+  SP
Sbjct: 1567 FSPAWSPQDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQSPAMSPSSPGYSPTSP 1626

Query: 155  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPS 325
             +      G +  + +Y+P SP Y  TSP   YSP++P+ + +SP YSP    YSPTSPS
Sbjct: 1627 LYSP-TSPGYSPTSPSYSPTSPGYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1683

Query: 326  VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                  P +   SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP 
Sbjct: 1684 Y----SPTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPI 1732

Query: 506  YQPPS 520
            Y P S
Sbjct: 1733 YSPTS 1737

 Score =  104 bits (260), Expect = 3e-21
 Identities = 65/152 (42%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +P+ SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1772 SPSYSPS---SPQYSPTSPAYSPQSPSYSPS-SPSYSPTSPKYSPTSPKYSPTSPK--YS 1825

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + SSP YSP    YSPTSP+      P +   SP SP Y PTSPAY+      +
Sbjct: 1826 PTSPSYSPSSPSYSPSSPNYSPTSPTYS----PTSPTYSPTSPAYSPTSPAYSPTSPAYS 1881

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              + VYSP+SPAYSP SP Y + +SP Y P S
Sbjct: 1882 PTSPVYSPTSPAYSPTSPKY-SPTSPKYSPTS 1912

 Score =  103 bits (258), Expect = 6e-21
 Identities = 69/179 (38%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SPI S    +   T    +P        +P+ SP SP Y+  SP +        +  +  
Sbjct: 1730 SPIYSPTSPSYSPTSPSYSPTSPSYSPTSPKYSPTSPSYSPTSPSY--------SPSSPQ 1781

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYAS 364
            Y+P SPAY   SP   YSPS+P+ + +SP Y   SP YSPTSP          P++   S
Sbjct: 1782 YSPTSPAYSPQSP--SYSPSSPSYSPTSPKYSPTSPKYSPTSPKYSPTSPSYSPSSPSYS 1839

Query: 365  PQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
            P SP Y PTSP Y+    T    +  YSP+SPAYSP SP Y+  S      SPAY P S
Sbjct: 1840 PSSPNYSPTSPTYSPTSPTYSPTSPAYSPTSPAYSPTSPAYSPTSPVYSPTSPAYSPTS 1898

 Score =  100 bits (248), Expect = 8e-20
 Identities = 63/155 (40%), Positives = 87/155 (56%), Gaps = 7/155 (4%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1709 SPSYSPT---SPSYSPTSPSYSPTSPIYSP-TSPSYSPTSPSYSPTSPSYSPTSPK--YS 1762

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSP+   +     P++   SP SP Y PTSP Y+    
Sbjct: 1763 PTSPSYSPTSPSYSPSSPQYSPTSPAYSPQSPSYSPSSPSYSPTSPKYSPTSPKYSPTSP 1822

Query: 419  VVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  +  YSPSSP+YSP SPNY + +SP Y P S
Sbjct: 1823 KYSPTSPSYSPSSPSYSPSSPNY-SPTSPTYSPTS 1856

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 63/159 (39%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + AY+P SP Y  TSP   YS
Sbjct: 1863 SPAYSPT---SPAYSPTSPAYSPTSPVY--------SPTSPAYSPTSPKYSPTSPK--YS 1909

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P  + +SP YSP   GYSPTSP          P     SP SP Y P SP Y+ P T
Sbjct: 1910 PTSPIYSPTSPAYSPTSTGYSPTSPEYSPSSPKYSPTTPQYSPTSPKYSPASPTYS-PST 1968

Query: 419  V----VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
                 V + N YSP  P YSP +P Y+   +P Y P  R
Sbjct: 1969 PTDKSVGSIN-YSPLEPDYSPGTPTYSPDGTPTYSPDGR 2006

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 56/164 (34%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP+ S    A   T  + +P        +P+ SP SP Y+  SP +     G        
Sbjct: 1884 SPVYSPTSPAYSPTSPKYSPT-------SPKYSPTSPIYSPTSPAYSPTSTG-------- 1928

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  +SP   YSP+TP  + +SP YSP    YSP++P+  + G  +  Y SP  
Sbjct: 1929 YSPTSPEYSPSSPK--YSPTTPQYSPTSPKYSPASPTYSPSTPTDKSVG--SINY-SPLE 1983

Query: 374  PGYVPTSPAYARPGTV-----------VAAANV----YSPSSPA 460
            P Y P +P Y+  GT             AA N+    YSPSSP+
Sbjct: 1984 PDYSPGTPTYSPDGTPTYSPDGRGFSGTAAKNISPMDYSPSSPS 2027

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 36/156 (23%)
 Frame = +2

Query: 161  GGGLGGGPAGGAGAYAPASPAYMATSPGM-----GYSPS-----TPALAVSSPGYSPGYS 310
            G G G  P GG    + ASP+  A SP M     G++P      +PAL       +  +S
Sbjct: 1493 GEGHGMMPGGGVFFGSAASPSN-AMSPQMTPWNQGHTPGYGDGWSPALGSGMTPGAASFS 1551

Query: 311  PTSPSVGARGGPAAGYA---SPQ----------------------SPGYVPTSPAYARPG 415
            P++ S  +   PA G++   SPQ                      SP Y P SPA+    
Sbjct: 1552 PSAHSDASGFSPAGGFSPAWSPQDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQS 1611

Query: 416  TVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              ++ ++  YSP+SP YSP SP Y + +SP+Y P S
Sbjct: 1612 PAMSPSSPGYSPTSPLYSPTSPGY-SPTSPSYSPTS 1646

[52][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
            RepID=C1MI48_9CHLO
          Length = 1694

 Score =  108 bits (269), Expect = 3e-22
 Identities = 81/177 (45%), Positives = 98/177 (55%), Gaps = 16/177 (9%)
 Frame = +2

Query: 38   SADAAGRAT-PGR-MTPG----RSPAGRFTPRMSPASPGYAAM--SPRFGGGLGGGPAGG 193
            SADA G  T P R  TPG     SP+   +P+ + ASP    M  SP   GG GGG   G
Sbjct: 1467 SADALGAGTTPARGTTPGGVGSASPSFLLSPQ-AHASPFDDTMRFSPYTEGGGGGGGGDG 1525

Query: 194  AG------AYAPASPAYMATSPGMGYSPSTPALAVSSPG-YSPGYSPTSPSVGARGGPAA 352
             G       Y+P SPAY  TSP   YSP++PA + +SP   SP YSPTSP+      P +
Sbjct: 1526 MGFSPTSPGYSPTSPAYSPTSPA--YSPTSPAYSPTSPAPTSPAYSPTSPAY----SPTS 1579

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP SP Y PTSPAY+      +  +  YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 1580 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 1635

 Score =  107 bits (267), Expect = 5e-22
 Identities = 70/168 (41%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATP---GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            T  FSP        G          +PG SP    +P  SP SP Y+  SP +       
Sbjct: 1507 TMRFSPYTEGGGGGGGGDGMGFSPTSPGYSPT---SPAYSPTSPAYSPTSPAYSPT---S 1560

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
            PA  + AY+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP+      P +
Sbjct: 1561 PAPTSPAYSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTS 1614

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
               SP SP Y PTSPAY+        +  YSP+SPAYSP SP Y+  S
Sbjct: 1615 PAYSPTSPAYSPTSPAYS------PTSPAYSPTSPAYSPTSPQYSPTS 1656

 Score = 73.9 bits (180), Expect = 6e-12
 Identities = 57/144 (39%), Positives = 69/144 (47%), Gaps = 16/144 (11%)
 Frame = +2

Query: 23   SPIMSSADAAGRAT-PGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG-- 193
            SP  S    A   T P   +P  SP    +P  SP SP Y+  SP +       PA    
Sbjct: 1546 SPAYSPTSPAYSPTSPAPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPT---SPAYSPT 1599

Query: 194  AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSP-----SVGA 334
            + AY+P SPAY  TSP        YSP++PA + +SP YSP    YSPTSP     SVG 
Sbjct: 1600 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTSVGL 1659

Query: 335  RGGPAAGYASPQSPGYVPTSPAYA 406
                 A   SP SP Y PT  A++
Sbjct: 1660 SDVENAPTRSPTSPQYSPTEGAFS 1683

[53][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
            RepID=B7PJA3_IXOSC
          Length = 1937

 Score =  108 bits (269), Expect = 3e-22
 Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  A   +   MTP        +P  SP SP Y+  SP +        +  + +
Sbjct: 1590 SPNYSPSSPAYAPSSPSMTPASPTYSPTSPSYSPTSPSYSPTSPNY--------SPTSPS 1641

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1642 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1695

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y+        +  YSP+SP+YSP SPNY  A SP+Y P S
Sbjct: 1696 PSYSPTSPSYS------PTSPSYSPTSPSYSPSSPNYTPA-SPSYSPTS 1737

 Score =  103 bits (256), Expect = 1e-20
 Identities = 67/183 (36%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A A  SP M+ A      T    +P        +P  SP SP Y+  SP +        +
Sbjct: 1599 AYAPSSPSMTPASPTYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSP-TSPSYS 1657

Query: 188  GGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARG- 340
              + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS      
Sbjct: 1658 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1717

Query: 341  --GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQ 511
               P++   +P SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY +  SP+Y 
Sbjct: 1718 SYSPSSPNYTPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNY-SPQSPSYS 1776

Query: 512  PPS 520
            P S
Sbjct: 1777 PGS 1779

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 64/153 (41%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +P  +PASP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1716 SPSYSPS---SPNYTPASPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1762

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGT--V 421
            PS+P  +  SP YSPG   YSP+SP             SP SP Y PTSP+Y+ PG+   
Sbjct: 1763 PSSPNYSPQSPSYSPGSPSYSPSSPKY-----------SPTSPSYSPTSPSYS-PGSPQY 1810

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              ++  YSP+SP YSP SP+Y + SSP Y P S
Sbjct: 1811 TPSSPKYSPTSPTYSPTSPSY-SPSSPKYSPTS 1842

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 62/152 (40%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P+SP Y   SP   YS
Sbjct: 1688 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPSSPNYTPASPS--YS 1734

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P++   SPQSP Y P SP+Y+      +
Sbjct: 1735 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPSSPNYSPQSPSYSPGSPSYSPSSPKYS 1790

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SP Y   SSP Y P S
Sbjct: 1791 PTSPSYSPTSPSYSPGSPQY-TPSSPKYSPTS 1821

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 65/178 (36%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG------GGLGGGP 184
            SP  S    +   T    +P        +P  SP SP Y+  SP++              
Sbjct: 1744 SPSYSPTSPSYSPTSPSYSPSSPNYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSPSY 1803

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSV---GARGGP 346
            + G+  Y P+SP Y  TSP   YSP++P+ + SSP Y   SP YSPTSP+      +  P
Sbjct: 1804 SPGSPQYTPSSPKYSPTSP--TYSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSP 1861

Query: 347  AAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +   SP SP Y PTSP Y+        +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1862 TSPQYSPTSPQYSPTSPKYS------PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1912

 Score = 90.9 bits (224), Expect = 5e-17
 Identities = 60/164 (36%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +PG       +P+ SP SP Y+  SP +        +  +  
Sbjct: 1786 SPKYSPTSPSYSPTSPSYSPGSPQYTPSSPKYSPTSPTYSPTSPSY--------SPSSPK 1837

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPS---VGARGGPAAGYAS 364
            Y+P SP Y  TSP   Y+PS+P  + +SP YSP    YSPTSP       +  P +   S
Sbjct: 1838 YSPTSPKYSPTSPT--YTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYS 1895

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
            P SP Y PTSP Y+         + YSP+SP YSP SP Y+  S
Sbjct: 1896 PTSPKYSPTSPTYSPTSP---KGSSYSPTSPGYSPSSPTYSPTS 1936

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 27/179 (15%)
 Frame = +2

Query: 65   PGRMTP---------GRSPAGRFTPRMSPASPGYAAMSPRFGGG----LGGGPAGGAGAY 205
            PG M P           +P    +P+M+P   G    +P +G G    LG G   GA  +
Sbjct: 1491 PGMMGPLGPGVFFGSAATPLAGMSPQMTPWGQG---ATPSYGSGWSPGLGSGMTPGAAGF 1547

Query: 206  APA--------SPAYMATSPGMGYSPSTPALAVSSP----GYSPGYSPTSPSVGARGGPA 349
            +P+        SPA    SPG    P +PA + +SP      SP YSP+SP+      P+
Sbjct: 1548 SPSAASDASGYSPASAGLSPGWSPQPGSPASSPASPYIPSPVSPNYSPSSPAYA----PS 1603

Query: 350  AGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +   +P SP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1604 SPSMTPASPTYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSPTS 1660

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 47/128 (36%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S        T    +P        +P+ SP SP Y   SP++        +  +  
Sbjct: 1814 SPKYSPTSPTYSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSP-TSPQYSPTSPQ 1872

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP++P  + +SP YSP    YSPTSP   +    + GY SP S
Sbjct: 1873 YSPTSPKYSPTSPK--YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSSYSPTSPGY-SPSS 1929

Query: 374  PGYVPTSP 397
            P Y PTSP
Sbjct: 1930 PTYSPTSP 1937

[54][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B29
          Length = 1891

 Score =  107 bits (268), Expect = 4e-22
 Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
            A FSP  +S DA+G       +PG SPA   TP  SP SPG +         AMSP +  
Sbjct: 1512 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1563

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
                      G Y P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS    
Sbjct: 1564 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1618

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1619 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1676

Query: 515  PS 520
             S
Sbjct: 1677 TS 1678

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1560 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1615

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1616 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1673

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+ +      +SP+Y P 
Sbjct: 1674 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1733

Query: 518  S 520
            S
Sbjct: 1734 S 1734

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP +       P     +
Sbjct: 1699 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1752

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
              P SP Y  TSP   YSPS+P    +SP Y   SP YSPTSP    +  P +   SP +
Sbjct: 1753 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1806

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+    V    +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1807 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1855

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
            I ++    G A P  M  G   SP G  +P M+P                          
Sbjct: 1455 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1514

Query: 125  ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
                       SPGY+ A SP  G     GP+       GGA   +Y+P SPAY   SPG
Sbjct: 1515 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1574

Query: 245  MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
             GY+P +P+ + +SP Y   SP YSPTSP+      P +   SP SP Y PTSP+Y+   
Sbjct: 1575 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1629

Query: 416  TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1630 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1664

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S +  +   TP  M+P  SP    +P+ +P SP Y+  SP +        +  
Sbjct: 1729 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1784

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
            +  Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   S
Sbjct: 1785 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1838

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P SP Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1839 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1884

[55][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B28
          Length = 1908

 Score =  107 bits (268), Expect = 4e-22
 Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
            A FSP  +S DA+G       +PG SPA   TP  SP SPG +         AMSP +  
Sbjct: 1529 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1580

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
                      G Y P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS    
Sbjct: 1581 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1635

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1636 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1693

Query: 515  PS 520
             S
Sbjct: 1694 TS 1695

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1577 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1632

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1633 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1690

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+ +      +SP+Y P 
Sbjct: 1691 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1750

Query: 518  S 520
            S
Sbjct: 1751 S 1751

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP +       P     +
Sbjct: 1716 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1769

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
              P SP Y  TSP   YSPS+P    +SP Y   SP YSPTSP    +  P +   SP +
Sbjct: 1770 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1823

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+    V    +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1824 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1872

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
            I ++    G A P  M  G   SP G  +P M+P                          
Sbjct: 1472 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1531

Query: 125  ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
                       SPGY+ A SP  G     GP+       GGA   +Y+P SPAY   SPG
Sbjct: 1532 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1591

Query: 245  MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
             GY+P +P+ + +SP Y   SP YSPTSP+      P +   SP SP Y PTSP+Y+   
Sbjct: 1592 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1646

Query: 416  TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1647 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1681

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S +  +   TP  M+P  SP    +P+ +P SP Y+  SP +        +  
Sbjct: 1746 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1801

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
            +  Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   S
Sbjct: 1802 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1855

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P SP Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1856 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1901

[56][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B24
          Length = 1924

 Score =  107 bits (268), Expect = 4e-22
 Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
            A FSP  +S DA+G       +PG SPA   TP  SP SPG +         AMSP +  
Sbjct: 1545 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1596

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
                      G Y P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS    
Sbjct: 1597 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1651

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1652 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1709

Query: 515  PS 520
             S
Sbjct: 1710 TS 1711

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1593 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1648

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1649 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1706

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+ +      +SP+Y P 
Sbjct: 1707 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1766

Query: 518  S 520
            S
Sbjct: 1767 S 1767

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP +       P     +
Sbjct: 1732 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1785

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
              P SP Y  TSP   YSPS+P    +SP Y   SP YSPTSP    +  P +   SP +
Sbjct: 1786 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1839

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+    V    +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1840 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1888

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
            I ++    G A P  M  G   SP G  +P M+P                          
Sbjct: 1488 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1547

Query: 125  ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
                       SPGY+ A SP  G     GP+       GGA   +Y+P SPAY   SPG
Sbjct: 1548 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1607

Query: 245  MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
             GY+P +P+ + +SP Y   SP YSPTSP+      P +   SP SP Y PTSP+Y+   
Sbjct: 1608 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1662

Query: 416  TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1663 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1697

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S +  +   TP  M+P  SP    +P+ +P SP Y+  SP +        +  
Sbjct: 1762 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1817

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
            +  Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   S
Sbjct: 1818 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1871

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P SP Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1872 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1917

[57][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B21
          Length = 1922

 Score =  107 bits (268), Expect = 4e-22
 Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
            A FSP  +S DA+G       +PG SPA   TP  SP SPG +         AMSP +  
Sbjct: 1543 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1594

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
                      G Y P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS    
Sbjct: 1595 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1649

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1650 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1707

Query: 515  PS 520
             S
Sbjct: 1708 TS 1709

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1591 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1646

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1647 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1704

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+ +      +SP+Y P 
Sbjct: 1705 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1764

Query: 518  S 520
            S
Sbjct: 1765 S 1765

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP +       P     +
Sbjct: 1730 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1783

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
              P SP Y  TSP   YSPS+P    +SP Y   SP YSPTSP    +  P +   SP +
Sbjct: 1784 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1837

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+    V    +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1838 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1886

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
            I ++    G A P  M  G   SP G  +P M+P                          
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1545

Query: 125  ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
                       SPGY+ A SP  G     GP+       GGA   +Y+P SPAY   SPG
Sbjct: 1546 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1605

Query: 245  MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
             GY+P +P+ + +SP Y   SP YSPTSP+      P +   SP SP Y PTSP+Y+   
Sbjct: 1606 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1660

Query: 416  TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1661 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S +  +   TP  M+P  SP    +P+ +P SP Y+  SP +        +  
Sbjct: 1760 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1815

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
            +  Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   S
Sbjct: 1816 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1869

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P SP Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1870 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1915

[58][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B20
          Length = 1923

 Score =  107 bits (268), Expect = 4e-22
 Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
            A FSP  +S DA+G       +PG SPA   TP  SP SPG +         AMSP +  
Sbjct: 1544 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1595

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
                      G Y P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS    
Sbjct: 1596 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1650

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1651 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1708

Query: 515  PS 520
             S
Sbjct: 1709 TS 1710

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+ +      +SP+Y P 
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1765

Query: 518  S 520
            S
Sbjct: 1766 S 1766

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP +       P     +
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1784

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
              P SP Y  TSP   YSPS+P    +SP Y   SP YSPTSP    +  P +   SP +
Sbjct: 1785 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1838

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+    V    +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1839 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1887

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
            I ++    G A P  M  G   SP G  +P M+P                          
Sbjct: 1487 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1546

Query: 125  ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
                       SPGY+ A SP  G     GP+       GGA   +Y+P SPAY   SPG
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1606

Query: 245  MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
             GY+P +P+ + +SP Y   SP YSPTSP+      P +   SP SP Y PTSP+Y+   
Sbjct: 1607 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1661

Query: 416  TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1662 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1696

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S +  +   TP  M+P  SP    +P+ +P SP Y+  SP +        +  
Sbjct: 1761 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1816

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
            +  Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   S
Sbjct: 1817 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1870

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P SP Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1871 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1916

[59][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B16
          Length = 1922

 Score =  107 bits (268), Expect = 4e-22
 Identities = 76/182 (41%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA---------AMSPRFGG 166
            A FSP  +S DA+G       +PG SPA   TP  SP SPG +         AMSP +  
Sbjct: 1543 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAMSPSYSP 1594

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
                      G Y P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS    
Sbjct: 1595 TSPAYEPRSPGGYTPQSPSYSPTSP--SYSPTSPSYSPTSPNYSPTSPSYSPTSPSY--- 1649

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
              P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1650 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1707

Query: 515  PS 520
             S
Sbjct: 1708 TS 1709

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1591 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1646

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1647 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1704

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+ +      +SP+Y P 
Sbjct: 1705 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1764

Query: 518  S 520
            S
Sbjct: 1765 S 1765

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP +       P     +
Sbjct: 1730 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNY------TPMSPNYS 1783

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
              P SP Y  TSP   YSPS+P    +SP Y   SP YSPTSP    +  P +   SP +
Sbjct: 1784 PTPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1837

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+    V    +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1838 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1886

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 52/216 (24%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP-------------------------- 124
            I ++    G A P  M  G   SP G  +P M+P                          
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYDPDPGAGSGMTPGAAGF 1545

Query: 125  ----------ASPGYA-AMSPRFGGGLGGGPA-------GGA--GAYAPASPAYMATSPG 244
                       SPGY+ A SP  G     GP+       GGA   +Y+P SPAY   SPG
Sbjct: 1546 SPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPG 1605

Query: 245  MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
             GY+P +P+ + +SP Y   SP YSPTSP+      P +   SP SP Y PTSP+Y+   
Sbjct: 1606 -GYTPQSPSYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYSPTSPSYSPTSPSYSPTS 1660

Query: 416  TVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1661 PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 66/170 (38%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S +  +   TP  M+P  SP    +P+ +P SP Y+  SP +        +  
Sbjct: 1760 SYSPTSPSYSPTSPNYTP--MSPNYSPTPT-SPKYTPTSPSYSPSSPEYTP-TSPKYSPT 1815

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
            +  Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   S
Sbjct: 1816 SPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYS 1869

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P SP Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1870 PTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1915

[60][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
            RepID=Q30BD9_9EUKA
          Length = 1852

 Score =  107 bits (268), Expect = 4e-22
 Identities = 73/175 (41%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAG-RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            A+ S+SP   S  AA  R +P   +PG S +   +P  SP SP Y+  SP +        
Sbjct: 1556 ASPSYSPASPSYSAASPRYSP--TSPGYSAS---SPSYSPTSPSYSPTSPSYSP-TSPSY 1609

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAG 355
            +  + AY+P SP+Y  TSPG  YSP++P+ + +SP Y   SP YSPTSPS      P + 
Sbjct: 1610 SPTSPAYSPTSPSYSPTSPG--YSPTSPSYSPTSPRYSPTSPSYSPTSPSY----SPTSP 1663

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1664 GYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1711

 Score =  105 bits (261), Expect = 3e-21
 Identities = 72/189 (38%), Positives = 96/189 (50%), Gaps = 21/189 (11%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S      A     +P  SP    +P  SP SP Y+  SPR+        +  +
Sbjct: 1601 SYSPTSPSYSPTSPAY-SPTSPSYSPT---SPGYSPTSPSYSPTSPRY--------SPTS 1648

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG--------- 340
             +Y+P SP+Y  TSPG  YSP++P+ + +SP YSP    YSPTSPS              
Sbjct: 1649 PSYSPTSPSYSPTSPG--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1706

Query: 341  -GPAAGYASPQSPGYVPTSPAYARPG--------TVVAAANVYSPSSPAYSPFSPNYAAA 493
              P +   SP SP Y PTSP+Y+           +   A+  YSPSSP+YSP SP+Y + 
Sbjct: 1707 YSPTSPSCSPTSPSYSPTSPSYSPTSPSYSPSSPSCSPASPTYSPSSPSYSPSSPSY-SP 1765

Query: 494  SSPAYQPPS 520
            SSP+Y P S
Sbjct: 1766 SSPSYSPSS 1774

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 61/169 (36%), Positives = 86/169 (50%), Gaps = 19/169 (11%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1683 SPSYSPT---SPSYSPTSPSYSPTSPSYSP-TSPSCSPTSPSYSPTSPSYSPTSPS--YS 1736

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            PS+P+ + +SP YSP    YSP+SPS         P++   SP SP Y P S  Y+ P  
Sbjct: 1737 PSSPSCSPASPTYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPQYTPASANYSPPSP 1796

Query: 419  VVAA-----ANVYSPSSPAYSPFSPNY--------AAASSPAYQPPSRR 526
            + ++      + YSP+SPAY   SP Y        A+  SPA  P S++
Sbjct: 1797 LHSSPAYSPTSQYSPTSPAYGASSPAYTPQSNLSPASLPSPALSPVSQK 1845

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 64/187 (34%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            +FS  ++ +       P  +  G    G  +P+M+P       M+P      GG P    
Sbjct: 1462 AFSTPLNRSTGGVDGQPNLVGEGSPTIG--SPQMTPYD---THMTPALQQSPGGTPFLDG 1516

Query: 197  GAYAPASPAYMAT---SPGMGYSPSTPALAVSSPGY----SPGYSPTSPSVGA---RGGP 346
              ++P + +       SP  GYSPS+P  +  SPG+    SP YSP SPS  A   R  P
Sbjct: 1517 ATFSPYAESPFVDGSFSPHRGYSPSSPPYSPRSPGFDYAASPSYSPASPSYSAASPRYSP 1576

Query: 347  AAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAAS------SPA 505
             +   S  SP Y PTSP+Y+      +  +  YSP+SPAYSP SP+Y+  S      SP+
Sbjct: 1577 TSPGYSASSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPGYSPTSPS 1636

Query: 506  YQPPSRR 526
            Y P S R
Sbjct: 1637 YSPTSPR 1643

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/169 (36%), Positives = 79/169 (46%), Gaps = 3/169 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1690 SPSYSPTSPSYSPTSPSYSPTSPSCSPTSPSYSPTSPSYSPTSPSY--------SPSSPS 1741

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
             +PASP Y  +SP   YSPS+P+ + SSP Y   SP YSP+SP             +P S
Sbjct: 1742 CSPASPTYSPSSPS--YSPSSPSYSPSSPSYSPSSPSYSPSSPQY-----------TPAS 1788

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              Y P SP ++ P         YSP+S  YSP SP Y  ASSPAY P S
Sbjct: 1789 ANYSPPSPLHSSP--------AYSPTS-QYSPTSPAY-GASSPAYTPQS 1827

[61][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
            RepID=C3ZES3_BRAFL
          Length = 1934

 Score =  107 bits (268), Expect = 4e-22
 Identities = 76/197 (38%), Positives = 102/197 (51%), Gaps = 29/197 (14%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATP------GRMTPGRSPAG-RFTPR----MSPASPGYAAMSPRFG 163
            ++SP   S  + G A+P      G M+P  SPA   + PR    M+P SPGY+  SP + 
Sbjct: 1564 AWSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPRSPGGMTPQSPGYSPTSPSYS 1623

Query: 164  GGLGG-GPAGG-----AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP--- 301
                   PA       + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP   
Sbjct: 1624 PTSPSYSPASPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683

Query: 302  GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSP 469
             YSPTSPS         P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP
Sbjct: 1684 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1743

Query: 470  FSPNYAAASSPAYQPPS 520
             SPNY   +SP Y P S
Sbjct: 1744 TSPNY-TPTSPKYSPTS 1759

 Score =  102 bits (253), Expect = 2e-20
 Identities = 75/191 (39%), Positives = 98/191 (51%), Gaps = 27/191 (14%)
 Frame = +2

Query: 23   SPIMSSADAAGRA-TPGRMTP---GRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGG 178
            SP  S A  A    +PG MTP   G SP        +P  SPASP Y+  SP +      
Sbjct: 1590 SPSYSPASPAYMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNYSPTSPSYSP-TSP 1648

Query: 179  GPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGA 334
              +  + +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS   
Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1708

Query: 335  RG---GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANV------YSPSSPAYSPFSPN 481
                  P +   SP SP Y PTSP+Y+   P     + N       YSP+SP+YSP SP+
Sbjct: 1709 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPKYSPTSPSYSPTSPS 1768

Query: 482  YAAASSPAYQP 514
            Y+ A SP+Y P
Sbjct: 1769 YSPA-SPSYSP 1778

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 77/171 (45%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTP-GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            A FSP  +S DA+G      M+P G SPA   TP  SP SPG A  SP       GGP  
Sbjct: 1543 AGFSPSAAS-DASG------MSPAGYSPAWSPTPG-SPGSPGPA--SPYIPSP--GGPM- 1589

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
             + +Y+PASPAYM  SPG G +P            SPGYSPTSPS      P +   SP 
Sbjct: 1590 -SPSYSPASPAYMPRSPG-GMTPQ-----------SPGYSPTSPSYS----PTSPSYSPA 1632

Query: 371  SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1682

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 67/164 (40%), Positives = 88/164 (53%), Gaps = 22/164 (13%)
 Frame = +2

Query: 95   AGRFTPRMSP-ASPGYAAMSPRFGG----GLGGGPAGGAGAYAPA-------------SP 220
            AG  T  MSP  +P     +P +GG    GLG G   GA  ++P+             SP
Sbjct: 1504 AGSPTASMSPQMTPWQQVGTPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSP 1563

Query: 221  AYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
            A+  T PG   SP   +  + SPG   SP YSP SP+   R   + G  +PQSPGY PTS
Sbjct: 1564 AWSPT-PGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPR---SPGGMTPQSPGYSPTS 1619

Query: 395  PAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P+Y+   P    A+ N YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1620 PSYSPTSPSYSPASPN-YSPTSPSYSPTSPSY-SPTSPSYSPTS 1661

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   S      +   ++ P  +P      + SP+SP Y+  SP++        +  +
Sbjct: 1768 SYSPASPSYSPTILSNLTQLQPHLTPVHSHVTQYSPSSPKYSPSSPKYSP-TSPTYSPSS 1826

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
              Y+PASP+Y  ++P   Y+P++P  + +SP Y   SP YSPTSPS      P     SP
Sbjct: 1827 AKYSPASPSYSPSTPK--YTPTSPKYSPASPTYTPTSPKYSPTSPSYT----PDTPKYSP 1880

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
             SP Y PTSP Y+         + YSP++P YSP SP Y+  S
Sbjct: 1881 TSPKYSPTSPTYSPTSP---KGSTYSPTTPGYSPASPTYSPES 1920

 Score = 87.4 bits (215), Expect = 5e-16
 Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT------- 235
            +P  SP    +P  SP SP Y   SP++        +  + +Y+PASP+Y  T       
Sbjct: 1731 SPSYSPT---SPSYSPTSPNYTPTSPKYSP-TSPSYSPTSPSYSPASPSYSPTILSNLTQ 1786

Query: 236  ---------SPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVP 388
                     S    YSPS+P  + SSP YSP  SPT     A+  PA+   SP +P Y P
Sbjct: 1787 LQPHLTPVHSHVTQYSPSSPKYSPSSPKYSPT-SPTYSPSSAKYSPASPSYSPSTPKYTP 1845

Query: 389  TSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            TSP Y+    T    +  YSP+SP+Y+P +P Y + +SP Y P S
Sbjct: 1846 TSPKYSPASPTYTPTSPKYSPTSPSYTPDTPKY-SPTSPKYSPTS 1889

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 65/195 (33%), Positives = 84/195 (43%), Gaps = 29/195 (14%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP------ 184
            SP  S    +   T    TP        +P  SP SP Y+  SP +   +          
Sbjct: 1731 SPSYSPTSPSYSPTSPNYTPTSPKYSPTSPSYSPTSPSYSPASPSYSPTILSNLTQLQPH 1790

Query: 185  -----------AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSP 322
                       +  +  Y+P+SP Y  TSP   YSPS+   + +SP YSP    Y+PTSP
Sbjct: 1791 LTPVHSHVTQYSPSSPKYSPSSPKYSPTSPT--YSPSSAKYSPASPSYSPSTPKYTPTSP 1848

Query: 323  SVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS-- 496
                   PA+   +P SP Y PTSP+Y  P T       YSP+SP YSP SP Y+  S  
Sbjct: 1849 KYS----PASPTYTPTSPKYSPTSPSYT-PDTPK-----YSPTSPKYSPTSPTYSPTSPK 1898

Query: 497  -------SPAYQPPS 520
                   +P Y P S
Sbjct: 1899 GSTYSPTTPGYSPAS 1913

[62][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1D
          Length = 1764

 Score =  107 bits (267), Expect = 5e-22
 Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 15/159 (9%)
 Frame = +2

Query: 89   SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            SP G  +P M+P    A+P Y A SP  GG +       + +Y+P SPAY   SPG GY+
Sbjct: 1533 SPMGGISPAMTPWNQGATPAYGAWSPSVGGAM-------SPSYSPTSPAYEPRSPG-GYT 1584

Query: 257  PSTPALAVSSPGYSP----------GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
            P +P+ + +SP YSP           YSPTSPS      P +   SP SP Y PTSP+Y+
Sbjct: 1585 PQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYS 1640

Query: 407  RPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                  +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1641 PTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1678

 Score =  103 bits (258), Expect = 6e-21
 Identities = 69/177 (38%), Positives = 94/177 (53%), Gaps = 11/177 (6%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG--A 196
            SP M+  +       G  +P  S  G  +P  SP SP Y   SP  GG     P+    +
Sbjct: 1539 SPAMTPWNQGATPAYGAWSP--SVGGAMSPSYSPTSPAYEPRSP--GGYTPQSPSYSPTS 1594

Query: 197  GAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
             +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS      P +
Sbjct: 1595 PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTS 1650

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1651 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1706

 Score =  101 bits (251), Expect = 4e-20
 Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1629 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1675

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+  RP   
Sbjct: 1676 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1731

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              + + YSP+SP+YSP SPNY    SP Y P S
Sbjct: 1732 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1762

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1643 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1689

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP  P Y PTSP+Y+   P   
Sbjct: 1690 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1745

Query: 422  VAAANVYSPSSPAYSPFSPN 481
              + N Y+P SP YSP SPN
Sbjct: 1746 PTSPN-YTPMSPNYSPTSPN 1764

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 41/104 (39%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
 Frame = +2

Query: 230  ATSPGMGYSPS-----TPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
            AT    G +PS     +PA+   + G +P Y   SPSVG             SP Y PTS
Sbjct: 1523 ATGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGGA----------MSPSYSPTS 1572

Query: 395  PAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            PAY    PG        Y+P SP+YSP SP+Y + +SP+Y P S
Sbjct: 1573 PAYEPRSPGG-------YTPQSPSYSPTSPSY-SPTSPSYSPTS 1608

[63][TOP]
>UniRef100_A7EKT1 DNA-directed RNA polymerase n=2 Tax=Sclerotinia sclerotiorum
            RepID=A7EKT1_SCLS1
          Length = 1746

 Score =  107 bits (267), Expect = 5e-22
 Identities = 81/211 (38%), Positives = 111/211 (52%), Gaps = 42/211 (19%)
 Frame = +2

Query: 14   ASFSPIMS--SADAAGRATP--------GRMTP----GRSPAGRFTP-----------RM 118
            A+FSPI S  S   +G AT         G M+P     RSP G ++P           + 
Sbjct: 1521 AAFSPIQSAGSETPSGFATEYGGSLGFGGGMSPYGAGSRSPGGGYSPTSPFNASPTSPQF 1580

Query: 119  SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA-LAVSSPGY 295
            SP+SPGY+  SP  GGG   G +     ++P SPA+  TSP   YSP++P+ ++ +SP Y
Sbjct: 1581 SPSSPGYSPTSPMMGGGASPGYSVSP-RFSPVSPAFTPTSPA--YSPTSPSFVSPTSPSY 1637

Query: 296  SP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-----------RPGTVVAAA 433
            SP    YSPTSP++   G P +   SP SP Y PTSP Y+            PG+ ++  
Sbjct: 1638 SPTSPNYSPTSPNI--HGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGSGLSPT 1695

Query: 434  N-VYSPSSPAYSPFSPNYAA-ASSPAYQPPS 520
            + VYSP+SP +SP SP +    +SP Y P S
Sbjct: 1696 SPVYSPTSPNWSPSSPQHQGNNTSPKYSPTS 1726

 Score =  102 bits (253), Expect = 2e-20
 Identities = 63/165 (38%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +      T   M  G SP    +PR SP SP +   SP +        +  + +
Sbjct: 1577 SPQFSPSSPGYSPTSPMMGGGASPGYSVSPRFSPVSPAFTPTSPAYSPTSPSFVSPTSPS 1636

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS-VGARGGPAAGYASPQ 370
            Y+P SP Y  TSP +  SP++P+ + +SP Y   SP YSPTSP+  G +  P +G  SP 
Sbjct: 1637 YSPTSPNYSPTSPNIHGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGSG-LSPT 1695

Query: 371  SPGYVPTSPAYARPGTVVAAANV---YSPSSPAYSPFSPNYAAAS 496
            SP Y PTSP ++         N    YSP+SP+YSP SPN++  S
Sbjct: 1696 SPVYSPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTSPNFSPTS 1740

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
 Frame = +2

Query: 176  GGPAGGAGAYAPASP----AYMATSP-GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARG 340
            GG  G A  Y   SP     Y+ T   G  +SP   A + +  G++  Y     S+G  G
Sbjct: 1493 GGEGGAATPYDGQSPLNEGGYLGTPDYGAAFSPIQSAGSETPSGFATEYGG---SLGFGG 1549

Query: 341  GPAAGYASPQSPG--YVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            G +   A  +SPG  Y PTSP  A P      +  +SPSSP YSP SP     +SP Y  
Sbjct: 1550 GMSPYGAGSRSPGGGYSPTSPFNASP-----TSPQFSPSSPGYSPTSPMMGGGASPGYSV 1604

Query: 515  PSR 523
              R
Sbjct: 1605 SPR 1607

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGL---GGGP 184
            S+SP   +         G  T P  SP    +P  SP SP Y+  SP + G     G G 
Sbjct: 1636 SYSPTSPNYSPTSPNIHGSPTSPSYSPT---SPSYSPTSPNYSPTSPNYAGNKVSPGSGL 1692

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG 331
            +  +  Y+P SP +  +SP    + ++P  + +SP YSP    +SPTSP  G
Sbjct: 1693 SPTSPVYSPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTSPNFSPTSPRGG 1744

[64][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9TK89_PHYPA
          Length = 1646

 Score =  107 bits (266), Expect = 7e-22
 Identities = 68/168 (40%), Positives = 94/168 (55%), Gaps = 5/168 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTP--GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S ++S +  A   +  + +P  G  P    +P  SP+SPGY+ +SP +     G      
Sbjct: 1495 SYLLSPSLRASPLSEAQFSPYVGSMPFSPSSPGYSPSSPGYSPLSPGYSPTSPG------ 1548

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
              Y+P SP Y  TSPG  YSP++P+ + +SPGYSP   GYSPTSPS            SP
Sbjct: 1549 --YSPTSPGYSPTSPG--YSPTSPSYSPTSPGYSPTSPGYSPTSPSY-----------SP 1593

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQ 511
             SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SPAY+
Sbjct: 1594 TSPSYAPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPAYK 1634

 Score =  103 bits (258), Expect = 6e-21
 Identities = 68/163 (41%), Positives = 91/163 (55%), Gaps = 14/163 (8%)
 Frame = +2

Query: 74   MTPGRSPA-------GRFTPR--MSPASPGYAAMSPRFGGGLGGGP-AGGAGAYAPASPA 223
            MTP RSP        G  +P   +SP+         +F   +G  P +  +  Y+P+SP 
Sbjct: 1475 MTPSRSPMIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSSPGYSPSSPG 1534

Query: 224  YMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
            Y   SPG  YSP++P  + +SPGY   SPGYSPTSPS      P +   SP SPGY PTS
Sbjct: 1535 YSPLSPG--YSPTSPGYSPTSPGYSPTSPGYSPTSPSY----SPTSPGYSPTSPGYSPTS 1588

Query: 395  PAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P+Y+      A  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1589 PSYSPTSPSYAPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1630

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 59/140 (42%), Positives = 77/140 (55%), Gaps = 5/140 (3%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A FSP + S   +  ++PG    +PG SP    +P  SP SPGY+  SP +      G +
Sbjct: 1510 AQFSPYVGSMPFSP-SSPGYSPSSPGYSP---LSPGYSPTSPGYSPTSPGYSP-TSPGYS 1564

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
              + +Y+P SP Y  TSPG  YSP++P+ + +SP Y   SP YSPTSPS      P +  
Sbjct: 1565 PTSPSYSPTSPGYSPTSPG--YSPTSPSYSPTSPSYAPTSPSYSPTSPSYS----PTSPS 1618

Query: 359  ASPQSPGYVPTSPAYARPGT 418
             SP SP Y PTSPAY    T
Sbjct: 1619 YSPTSPSYSPTSPAYKHKPT 1638

[65][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
            RepID=C5GKA7_AJEDR
          Length = 1746

 Score =  107 bits (266), Expect = 7e-22
 Identities = 74/185 (40%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSP 154
            A F+    S  + G +  G  +PG   SP   F     +PR SP+S      PG +  SP
Sbjct: 1538 AGFTEYQPSGFSGGFSPHGARSPGGGYSPTSPFNTSPTSPRYSPSSGYSPTSPGMSITSP 1597

Query: 155  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
            RF    G  PA  + A+AP SPAY  TSPG   SP++P+ + +SPG+   SP YSPTSPS
Sbjct: 1598 RFMSSPGFSPA--SPAFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPS 1655

Query: 326  VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                  PA+   SP SP Y PTSPA     +     +  SP+SP Y+P SP ++  S   
Sbjct: 1656 F----SPASPAFSPTSPSYSPTSPALGI--STGRHLSPTSPTSPKYTPTSPGWSPTSPET 1709

Query: 506  YQPPS 520
            Y P S
Sbjct: 1710 YSPTS 1714

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGP 184
            A+ +F+P   ++ A    +PG      SP+   T P  SP SP Y+  SP F       P
Sbjct: 1608 ASPAFAP---TSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFS------P 1658

Query: 185  AGGAGAYAPASPAYMATSPGMGYS---------PSTPALAVSSPGYSPG----YSPTSPS 325
            A  + A++P SP+Y  TSP +G S         P++P    +SPG+SP     YSPTSP+
Sbjct: 1659 A--SPAFSPTSPSYSPTSPALGISTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPN 1716

Query: 326  VGARGGPAAGYASPQSPGYVPTSPAY 403
                 G       P SPGY PTSP +
Sbjct: 1717 FS---GSPTSPGGPTSPGYSPTSPTF 1739

[66][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
            RepID=UPI0000546D90
          Length = 1972

 Score =  106 bits (265), Expect = 9e-22
 Identities = 73/173 (42%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            A FSP  +S DA+G       +PG SPA   TP  SP SPG A+      G +       
Sbjct: 1541 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPASPYIPSPGYITLHFGAL 1592

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            +  Y+P SPAY   SPG GY+P +P  + +SP Y   SP YSPTSP+      P +   S
Sbjct: 1593 SPNYSPTSPAYEPRSPGGGYTPQSPGYSPTSPSYSPTSPSYSPTSPNY----SPTSPSYS 1648

Query: 365  PQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1649 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1700

 Score =  105 bits (263), Expect = 1e-21
 Identities = 69/178 (38%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP        G  TP   +PG SP    +P  SP SP Y+  SP +        +  + +
Sbjct: 1600 SPAYEPRSPGGGYTP--QSPGYSPT---SPSYSPTSPSYSPTSPNYSP-TSPSYSPTSPS 1653

Query: 203  YAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPA 349
            Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS         P 
Sbjct: 1654 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1713

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY   +SP+Y P S
Sbjct: 1714 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-TPTSPSYSPTS 1770

 Score =  102 bits (255), Expect = 1e-20
 Identities = 71/166 (42%), Positives = 91/166 (54%), Gaps = 22/166 (13%)
 Frame = +2

Query: 89   SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG-------GAGAYAPA-SPAYMA 232
            SP    +P M+P    A+P Y A SP  G G+  G AG        A  ++P  SPA+  
Sbjct: 1505 SPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSP 1564

Query: 233  TSPGMGYSPSTPALAVSSPGY--------SPGYSPTSPSVGARGGPAAGYASPQSPGYVP 388
            T PG   SP   +  + SPGY        SP YSPTSP+   R  P  GY +PQSPGY P
Sbjct: 1565 T-PGSPGSPGPASPYIPSPGYITLHFGALSPNYSPTSPAYEPR-SPGGGY-TPQSPGYSP 1621

Query: 389  TSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            TSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1622 TSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSPTS 1665

 Score =  102 bits (254), Expect = 2e-20
 Identities = 64/157 (40%), Positives = 85/157 (54%), Gaps = 9/157 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1672 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1718

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 1719 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPNYTPTSPSYS------P 1768

Query: 428  AANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
             +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1769 TSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1805

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 64/162 (39%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1707 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1753

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGG---PAAGYASPQSPGYVPTSPAYA---- 406
            P++P    +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y+    
Sbjct: 1754 PTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPSSP 1813

Query: 407  ----RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                +  T   ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1814 RYTPQSPTYTPSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1854

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 65/173 (37%), Positives = 87/173 (50%), Gaps = 7/173 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    TP        +P  SP SP Y+  SPR+           + +
Sbjct: 1770 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPSSPRY-TPQSPTYTPSSPS 1828

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS---VGARGGPAAGYAS 364
            Y+P+SP+Y  TSP   Y+P++P+ + SSP Y   SP YSPTSP       +  P +   S
Sbjct: 1829 YSPSSPSYSPTSP--KYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYS 1886

Query: 365  PQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P +P Y PTSP Y+    T    +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1887 PTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1938

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 61/163 (37%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1826 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1870

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP       P +   SP S
Sbjct: 1871 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPTYTPTSPKYS----PTSPTYSPTS 1924

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
            P Y PTSP Y+         + YSP+SP YSP SP Y+ A SP
Sbjct: 1925 PKYSPTSPTYSPTSP---KGSTYSPTSPGYSPTSPTYSPAISP 1964

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 55/158 (34%), Positives = 72/158 (45%), Gaps = 44/158 (27%)
 Frame = +2

Query: 179  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSP----------------------G 292
            GP G     AP+  + M+ +     + +TPA    SP                      G
Sbjct: 1494 GPTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASG 1553

Query: 293  YSPGYSPT-SPSVGARG--GPAAGY-ASP---------QSPGYVPTSPAY---ARPGTVV 424
            +SPGYSP  SP+ G+ G  GPA+ Y  SP          SP Y PTSPAY   +  G   
Sbjct: 1554 FSPGYSPAWSPTPGSPGSPGPASPYIPSPGYITLHFGALSPNYSPTSPAYEPRSPGGGYT 1613

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SP+Y+  S      SP+Y P S
Sbjct: 1614 PQSPGYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1651

[67][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
            RepID=Q1E2G9_COCIM
          Length = 1750

 Score =  106 bits (265), Expect = 9e-22
 Identities = 67/153 (43%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +PG SP+  +    SP SPG +  SPR+    G  PA  +  +AP SPAY  TSPG G  
Sbjct: 1578 SPGYSPSSGY----SPTSPGMSITSPRYMTSPGFSPA--SPTFAPTSPAYSPTSPGYGQA 1631

Query: 251  YSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
             SP++P+ + +SPG+   SP YSPTSPS      PA+   SP SP Y PTSPA    G  
Sbjct: 1632 QSPTSPSYSPTSPGFSPTSPSYSPTSPSF----SPASPAFSPTSPSYSPTSPALG--GAT 1685

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                +  SP+SP Y+P SP ++  S  AY P S
Sbjct: 1686 GRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTS 1718

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 63/180 (35%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
 Frame = +2

Query: 32   MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
            +SS D   + +P   T   +PAG FT    P   G+   SP      GG         +P
Sbjct: 1521 ISSPDPDSQFSPIGQTGSETPAG-FTEYQPP---GFGGFSPAGARSPGGYSPTSPFNTSP 1576

Query: 212  ASPAYMATSPGMGYSPSTPALAVSSPGY----------------SPGYSPTSPSVGARGG 343
             SP Y   SP  GYSP++P ++++SP Y                SP YSPTSP  G    
Sbjct: 1577 TSPGY---SPSSGYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQS 1633

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P +   SP SPG+ PTSP+Y+      + A+  +SP+SP+YSP SP    A+     P S
Sbjct: 1634 PTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSPTS 1693

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 51/143 (35%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            A  SP  S             +P  SP    +P  SP SP Y+  SP F       PA  
Sbjct: 1615 APTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYSPTSPSFS------PA-- 1663

Query: 194  AGAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSP----GYSPTSPSVGA 334
            + A++P SP+Y  TSP +G          SP++P    +SPG+SP     YSPTSP+   
Sbjct: 1664 SPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFA- 1722

Query: 335  RGGPAAGYASPQSPGYVPTSPAY 403
              G       P SPGY PTSP +
Sbjct: 1723 --GSPTSPGGPTSPGYSPTSPTF 1743

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 57/189 (30%), Positives = 81/189 (42%), Gaps = 33/189 (17%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG---GLGGG 181
            T+  SP  S +      +PG      SP    +P  SPASP +A  SP +     G G  
Sbjct: 1574 TSPTSPGYSPSSGYSPTSPGMSIT--SPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQA 1631

Query: 182  PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPG-------------- 304
             +  + +Y+P SP +  TSP        +SP++PA + +SP YSP               
Sbjct: 1632 QSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSP 1691

Query: 305  -------YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA----RPGTVVAAANVYSPS 451
                   Y+PTSP          G++      Y PTSP +A     PG   +    YSP+
Sbjct: 1692 TSPTSPKYTPTSP----------GWSPTSPEAYSPTSPNFAGSPTSPGGPTSPG--YSPT 1739

Query: 452  SPAYSPFSP 478
            SP ++P SP
Sbjct: 1740 SPTFNPTSP 1748

[68][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
            SOWgp RepID=C5PAJ4_COCP7
          Length = 1746

 Score =  106 bits (265), Expect = 9e-22
 Identities = 67/153 (43%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +PG SP+  +    SP SPG +  SPR+    G  PA  +  +AP SPAY  TSPG G  
Sbjct: 1578 SPGYSPSSGY----SPTSPGMSITSPRYMTSPGFSPA--SPTFAPTSPAYSPTSPGYGQA 1631

Query: 251  YSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
             SP++P+ + +SPG+   SP YSPTSPS      PA+   SP SP Y PTSPA    G  
Sbjct: 1632 QSPTSPSYSPTSPGFSPTSPSYSPTSPSF----SPASPAFSPTSPSYSPTSPALG--GAT 1685

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                +  SP+SP Y+P SP ++  S  AY P S
Sbjct: 1686 GRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTS 1718

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 63/180 (35%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
 Frame = +2

Query: 32   MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
            +SS D   + +P   T   +PAG FT    P   G+   SP      GG         +P
Sbjct: 1521 ISSPDPDSQFSPIGQTGSETPAG-FTEYQPP---GFGGFSPAGARSPGGYSPTSPFNTSP 1576

Query: 212  ASPAYMATSPGMGYSPSTPALAVSSPGY----------------SPGYSPTSPSVGARGG 343
             SP Y   SP  GYSP++P ++++SP Y                SP YSPTSP  G    
Sbjct: 1577 TSPGY---SPSSGYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQS 1633

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P +   SP SPG+ PTSP+Y+      + A+  +SP+SP+YSP SP    A+     P S
Sbjct: 1634 PTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSPTS 1693

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 51/143 (35%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            A  SP  S             +P  SP    +P  SP SP Y+  SP F       PA  
Sbjct: 1615 APTSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYSPTSPSFS------PA-- 1663

Query: 194  AGAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSP----GYSPTSPSVGA 334
            + A++P SP+Y  TSP +G          SP++P    +SPG+SP     YSPTSP+   
Sbjct: 1664 SPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFA- 1722

Query: 335  RGGPAAGYASPQSPGYVPTSPAY 403
              G       P SPGY PTSP +
Sbjct: 1723 --GSPTSPGGPTSPGYSPTSPTF 1743

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 56/187 (29%), Positives = 79/187 (42%), Gaps = 29/187 (15%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG---GLGGG 181
            T+  SP  S +      +PG      SP    +P  SPASP +A  SP +     G G  
Sbjct: 1574 TSPTSPGYSPSSGYSPTSPGMSIT--SPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQA 1631

Query: 182  PAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPG-------------- 304
             +  + +Y+P SP +  TSP        +SP++PA + +SP YSP               
Sbjct: 1632 QSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSP 1691

Query: 305  -------YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAY 463
                   Y+PTSP          G++      Y PTSP +A   T     +   P+SP Y
Sbjct: 1692 TSPTSPKYTPTSP----------GWSPTSPEAYSPTSPNFAGSPT-----SPGGPTSPGY 1736

Query: 464  SPFSPNY 484
            SP SP +
Sbjct: 1737 SPTSPTF 1743

[69][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase II subunit A) (DNA-directed RNA polymerase III
            largest subunit) n=1 Tax=Equus caballus
            RepID=UPI0001796DD3
          Length = 1834

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 518  S 520
            S
Sbjct: 1766 S 1766

 Score =  100 bits (249), Expect = 6e-20
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SPNY   +SP Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNY-TPTSPNYSPTS 1787

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNVGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 61/156 (39%), Positives = 82/156 (52%), Gaps = 10/156 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1689 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1735

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    Y+PTSPS      P +   SP SP Y PTSP Y+      +
Sbjct: 1736 PTSPSYSPTSPNYSPTSPNYTPTSPSYS----PTSPSYSPTSPNYTPTSPNYSPTSPSYS 1791

Query: 428  AANV-YSPSSPAYSPFSPNYAAAS------SPAYQP 514
                 YSP+SP+YSP SP Y+  S      SPA  P
Sbjct: 1792 PTTPSYSPTSPSYSPTSPGYSPTSPTYSLTSPAISP 1827

[70][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF13
          Length = 1932

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1554 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1609

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1610 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1667

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1668 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1727

Query: 518  S 520
            S
Sbjct: 1728 S 1728

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1616 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1662

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1663 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1718

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1719 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1756

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1679 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1725

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1726 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1781

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1782 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1812

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 71/171 (41%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
            A FSP  +S DA+G       +PG SPA   TP  SP SPG ++   P  GG +      
Sbjct: 1506 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM------ 1551

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
             + +Y+P SPAY   SPG GY+P +P+ + +SP YSP    TSPS            SP 
Sbjct: 1552 -SPSYSPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSP----TSPSY-----------SPT 1594

Query: 371  SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1595 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1644

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1763 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1809

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1810 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1865

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1866 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1896

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1758 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1804

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1805 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1858

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1859 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1912

Query: 518  S 520
            S
Sbjct: 1913 S 1913

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1784 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1828

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1829 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1882

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1883 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1925

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 16/111 (14%)
 Frame = +2

Query: 236  SPGM-GYSPSTPALAVSSPGYSPGYSPT-SPSVGARG--GPAAGY----ASPQSPGYVPT 391
            +PG  G+SPS    A  + G+SPGYSP  SP+ G+ G  GP++ Y        SP Y PT
Sbjct: 1502 TPGAAGFSPSA---ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT 1558

Query: 392  SPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
            SPAY    PG     +  YSP+SP+YSP SP+Y+  S      SP+Y P S
Sbjct: 1559 SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1609

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
 Frame = +2

Query: 152  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS---TPALAVSSPGYSP------- 301
            P  G     G   GA  ++P S A  A+    GYSP+   TP  +  SPG S        
Sbjct: 1491 PGLGAAGRSGMTPGAAGFSP-SAASDASGFSPGYSPAWSPTPG-SPGSPGPSSPYIPSPG 1548

Query: 302  -----GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPA 460
                  YSPTSP+   R   + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+
Sbjct: 1549 GAMSPSYSPTSPAYEPR---SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPS 1604

Query: 461  YSPFSPNYAAASSPAYQPPS 520
            YSP SP+Y + +SP+Y P S
Sbjct: 1605 YSPTSPSY-SPTSPSYSPTS 1623

[71][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
            domestica RepID=UPI0000F2BF12
          Length = 1970

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 518  S 520
            S
Sbjct: 1766 S 1766

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1842

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950

Query: 518  S 520
            S
Sbjct: 1951 S 1951

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1866

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963

[72][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
            isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
          Length = 1970

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 518  S 520
            S
Sbjct: 1766 S 1766

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1842

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950

Query: 518  S 520
            S
Sbjct: 1951 S 1951

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1866

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963

[73][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 13 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B22
          Length = 1722

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/177 (38%), Positives = 94/177 (53%), Gaps = 9/177 (5%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1456 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1511

Query: 197  GAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
             +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    YSPTSPS      P +
Sbjct: 1512 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTS 1567

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY + SSP Y P S
Sbjct: 1568 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPSSPKYSPTS 1623

 Score =  102 bits (255), Expect = 1e-20
 Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
 Frame = +2

Query: 98   GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 277
            G  +P  SP SP Y   SP       GG    + +Y+P SP+Y  TSP   YSP++P  +
Sbjct: 1451 GAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYS 1501

Query: 278  VSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYS 445
             +SP Y   SP YSPTSPS      P +   SP SP Y PTSP+Y+      +  +  YS
Sbjct: 1502 PTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1557

Query: 446  PSSPAYSPFSPNYAAASSPAYQPPS 520
            P+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1558 PTSPSYSPTSPSY-SPTSPSYSPTS 1581

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 60/149 (40%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1588 SPSYSPT---SPSYSPTSPSYSPTSPNY--------SPSSPKYSPTSPKYSPTSPT--YS 1634

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P+TP  + +SP YSP    Y+PTSP    +  P +   SP SP Y PTSP Y+       
Sbjct: 1635 PTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTSPKYSPTSPTYS---PTSP 1687

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1688 KGSTYSPTSPGYSPTSPTY-SLTSPAISP 1715

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 52/152 (34%), Positives = 68/152 (44%), Gaps = 3/152 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P        +P+ SP SP Y+  +P+               
Sbjct: 1595 SPSYSPTSPSYSPTSPNYSPSSPKYSPTSPKYSPTSPTYSPTTPK--------------- 1639

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   Y+P++P  + +SP Y   SP YSPTSP+        + Y SP S
Sbjct: 1640 YSPTSPTYSPTSP--VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTY-SPTS 1696

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
            PGY PTSP              YS +SPA SP
Sbjct: 1697 PGYSPTSP-------------TYSLTSPAISP 1715

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 45/118 (38%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
 Frame = +2

Query: 170  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPA 349
            LG     G G +     A    +    YSP++PA    SPG   GY+P SPS        
Sbjct: 1430 LGQLAPAGTGCFDLLLDAEKCGAMSPSYSPTSPAYEPRSPG---GYTPQSPSY------- 1479

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1480 ----SPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1532

[74][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25C
          Length = 1968

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1594 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1649

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1650 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1707

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1708 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1767

Query: 518  S 520
            S
Sbjct: 1768 S 1768

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1656 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1702

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1703 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1758

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1759 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1796

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1719 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1765

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1766 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1821

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1822 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1852

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1488 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGDGMTPGAAG 1547

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1548 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1605

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1606 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1661

Query: 515  PS 520
             S
Sbjct: 1662 TS 1663

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1803 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1849

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1850 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1905

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1906 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1936

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1798 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1844

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1845 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1898

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1899 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1952

Query: 518  S 520
            S
Sbjct: 1953 S 1953

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1824 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1868

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1869 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1922

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1923 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1965

[75][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
            RepID=UPI0001B7A25B
          Length = 1932

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1554 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1609

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1610 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1667

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1668 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1727

Query: 518  S 520
            S
Sbjct: 1728 S 1728

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1616 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1662

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1663 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1718

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1719 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1756

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1679 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1725

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1726 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1781

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1782 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1812

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 71/171 (41%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
            A FSP  +S DA+G       +PG SPA   TP  SP SPG ++   P  GG +      
Sbjct: 1506 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM------ 1551

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
             + +Y+P SPAY   SPG GY+P +P+ + +SP YSP    TSPS            SP 
Sbjct: 1552 -SPSYSPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSP----TSPSY-----------SPT 1594

Query: 371  SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1595 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1644

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1763 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1809

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1810 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1865

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1866 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1896

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1758 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1804

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1805 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1858

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1859 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1912

Query: 518  S 520
            S
Sbjct: 1913 S 1913

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1784 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1828

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1829 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1882

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1883 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1925

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 16/111 (14%)
 Frame = +2

Query: 236  SPGM-GYSPSTPALAVSSPGYSPGYSPT-SPSVGARG--GPAAGY----ASPQSPGYVPT 391
            +PG  G+SPS    A  + G+SPGYSP  SP+ G+ G  GP++ Y        SP Y PT
Sbjct: 1502 TPGAAGFSPSA---ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT 1558

Query: 392  SPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
            SPAY    PG     +  YSP+SP+YSP SP+Y+  S      SP+Y P S
Sbjct: 1559 SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 1609

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
 Frame = +2

Query: 152  PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS---TPALAVSSPGYSP------- 301
            P  G     G   GA  ++P S A  A+    GYSP+   TP  +  SPG S        
Sbjct: 1491 PGLGAAGRSGMTPGAAGFSP-SAASDASGFSPGYSPAWSPTPG-SPGSPGPSSPYIPSPG 1548

Query: 302  -----GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPA 460
                  YSPTSP+   R   + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+
Sbjct: 1549 GAMSPSYSPTSPAYEPR---SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPS 1604

Query: 461  YSPFSPNYAAASSPAYQPPS 520
            YSP SP+Y + +SP+Y P S
Sbjct: 1605 YSPTSPSY-SPTSPSYSPTS 1623

[76][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
          Length = 1970

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 518  S 520
            S
Sbjct: 1766 S 1766

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1842

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950

Query: 518  S 520
            S
Sbjct: 1951 S 1951

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1866

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963

[77][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
            RepID=O35559_CRIGR
          Length = 1970

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 518  S 520
            S
Sbjct: 1766 S 1766

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1842

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950

Query: 518  S 520
            S
Sbjct: 1951 S 1951

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1866

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963

[78][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
          Length = 1966

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 518  S 520
            S
Sbjct: 1766 S 1766

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1848 PSSPEYTPASPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 67/174 (38%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++        +  
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY-TPTSPSYSPS 1849

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---PGYSPTSPSVGARGGPAAGYAS 364
            +  Y PASP Y  TSP   YSP++P  + +SP YS   P YSPTSP+      P +   +
Sbjct: 1850 SPEYTPASPKYSPTSP--KYSPTSPKYSPTSPTYSPTTPKYSPTSPTY----SPTSPVYT 1903

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS--SPAYQPPS 520
            P SP Y PTSP Y+        +  YSP+SP YSP SP  +  S  SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYS------PTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 1951

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 60/161 (37%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +PASP Y+  SP+               
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPK--------------- 1866

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
            P Y PTSP Y+         + YSP+SP YSP SP Y+  S
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTYSLTS 1958

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P+ SP SP Y+  +P++        +  +  Y+P SP Y  TSP   YS
Sbjct: 1864 SPKYSPT---SPKYSPTSPTYSPTTPKY--------SPTSPTYSPTSPVYTPTSPK--YS 1910

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
            P++P  + +SP YSP    YSPTSP        + GY SP SP Y  TSPA
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGY-SPTSPTYSLTSPA 1960

[79][TOP]
>UniRef100_B4DET1 cDNA FLJ53860, highly similar to DNA-directed RNA polymerase II
            largest subunit (EC 2.7.7.6) n=1 Tax=Homo sapiens
            RepID=B4DET1_HUMAN
          Length = 855

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 491  SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 546

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 547  PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 604

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 605  YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 664

Query: 518  S 520
            S
Sbjct: 665  S 665

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 553 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 599

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
           P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 600 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 655

Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
             +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 656 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 693

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29  IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
           I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 385 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 444

Query: 191 -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                   A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 445 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 502

Query: 341 GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
             + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 503 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 558

Query: 515 PS 520
            S
Sbjct: 559 TS 560

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 62/151 (41%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 588 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 634

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
           P++P+ + +SP YSP    Y+PTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 635 PTSPSYSPTSPNYSPTSPNYTPTSPSYS----PTSPSYSPTSPNYTPTSPNYS------P 684

Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +  YSP+SP+YSP SP+Y + SSP Y P S
Sbjct: 685 TSPSYSPTSPSYSPTSPSY-SPSSPRYTPQS 714

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +           + +Y+P SP+Y  TSP   Y+
Sbjct: 630  SPSYSPT---SPSYSPTSPNYSPTSPNY--------TPTSPSYSPTSPSYSPTSPN--YT 676

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P  + +SP YSP    YSPTSPS      P++   +PQSP Y P+SP+Y+       
Sbjct: 677  PTSPNYSPTSPSYSPTSPSYSPTSPSYS----PSSPRYTPQSPTYTPSSPSYS------P 726

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            ++  YSP+SP Y+P SP Y + +SP Y P S
Sbjct: 727  SSPSYSPTSPKYTPTSPKY-SPTSPKYSPTS 756

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 60/152 (39%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SPR+           +  Y P+SP+Y  +SP   YS
Sbjct: 686  SPSYSPT---SPSYSPTSPSYSPSSPRY--------TPQSPTYTPSSPSYSPSSP--SYS 732

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 733  PTSPKYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 788

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+ P YSP SP Y + +SP Y P S
Sbjct: 789  PTSPKYSPTGPTYSPTSPKY-SPTSPTYSPTS 819

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 68/175 (38%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMT-----PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 178
            S+SP   S + ++ R TP   T     P  SP+   +P  SP SP Y   SP++      
Sbjct: 695  SYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPS---SPSYSPTSPKYTPTSPKY------ 745

Query: 179  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPA 349
              +  +  Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P 
Sbjct: 746  --SPTSPKYSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPT 797

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
                SP SP Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 798  GPTYSPTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 848

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 62/154 (40%), Positives = 82/154 (53%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 700  SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--KYS 746

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P  + +SP Y   SP YSPT+P    +  P +   SP SP Y PTSP Y+  G T  
Sbjct: 747  PTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTSPVYTPTSPKYSPTGPTYS 802

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS--SPAYQPPS 520
              +  YSP+SP YSP SP  +  S  SP Y P S
Sbjct: 803  PTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 836

[80][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
          Length = 1970

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 518  S 520
            S
Sbjct: 1766 S 1766

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 63/161 (39%), Positives = 85/161 (52%), Gaps = 13/161 (8%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1703 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPN--YS 1749

Query: 257  PSTPALAVSSPGYSP---GYSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P    +SP YSP    YSPTSP+         P +   SP SP Y PTSP+Y+    
Sbjct: 1750 PTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSP 1809

Query: 419  -VVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
                 +  Y+PSSP+YSP SP+Y+ AS      SP+Y P S
Sbjct: 1810 RYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPSS 1850

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 63/152 (41%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+PASP Y  TSP   YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPASPKYTPTSP--SYS 1847

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPASPKY--------TPT 1842

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950

Query: 518  S 520
            S
Sbjct: 1951 S 1951

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 66/173 (38%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
 Frame = +2

Query: 8    ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            ++ S+SP   S + A+ + TP   +P  SP+   +P  +P SP Y+  SP+         
Sbjct: 1821 SSPSYSPSSPSYSPASPKYTP--TSPSYSPS---SPEYTPTSPKYSPTSPK--------- 1866

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAG 355
                  Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P + 
Sbjct: 1867 ------YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSP 1914

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              SP SP Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1915 TYSPTSPKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963

[81][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
            RepID=RPB1_MOUSE
          Length = 1970

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 518  S 520
            S
Sbjct: 1766 S 1766

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1848 PSSPEYTPASPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 63/167 (37%), Positives = 82/167 (49%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +PASP Y+  SP+               
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPK--------------- 1866

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963

[82][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
            RepID=RPB1_HUMAN
          Length = 1970

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 1765

Query: 518  S 520
            S
Sbjct: 1766 S 1766

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1654 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1700

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 1701 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 1756

Query: 425  AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1717 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 1763

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
            P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 1764 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 1819

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1820 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1850

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1801 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 1847

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1848 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1934

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 1796 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 1842

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1843 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1896

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1897 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1950

Query: 518  S 520
            S
Sbjct: 1951 S 1951

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1822 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1866

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1867 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1920

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1921 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1963

[83][TOP]
>UniRef100_P11414 DNA-directed RNA polymerase II subunit RPB1 (Fragment) n=1
           Tax=Cricetulus griseus RepID=RPB1_CRIGR
          Length = 467

 Score =  106 bits (264), Expect = 1e-21
 Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17  SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
           S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 89  SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 144

Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
            +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 145 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 202

Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAAS------SPAYQPP 517
            SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+  S      SP+Y P 
Sbjct: 203 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPT 262

Query: 518 S 520
           S
Sbjct: 263 S 263

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 151 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 197

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVV 424
           P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+       
Sbjct: 198 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPTSPNYT 253

Query: 425 AAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
             +  YSP+SP+YSP SPNY   S      SP+Y P S
Sbjct: 254 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS 291

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 214 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPNYSPTSPNYTPTSPS--YS 260

Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVV 424
           P++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y P+SP Y  +  T  
Sbjct: 261 PTSPSYSPTSPNYTPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPSSPRYTPQSPTYT 316

Query: 425 AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 317 PSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 347

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 71/171 (41%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
 Frame = +2

Query: 14  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
           A FSP  +S DA+G       +PG SPA   TP  SP SPG ++   P  GG +      
Sbjct: 41  AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM------ 86

Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
            + +Y+P SPAY   SPG GY+P +P+ + +SP YSP    TSPS            SP 
Sbjct: 87  -SPSYSPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSP----TSPSY-----------SPT 129

Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 130 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 179

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 62/152 (40%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP+   +PR +P SP Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 298 SPSYSPS---SPRYTPQSPTYTPSSPSY--------SPSSPSYSPTSPKYTPTSP--SYS 344

Query: 257 PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
           PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 345 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 400

Query: 428 AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 401 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 431

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/181 (37%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17  SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
           S+SP   S + ++ R TP   +P  +P+   +P  SP+SP Y+  SP++           
Sbjct: 293 SYSPTSPSYSPSSPRYTP--QSPTYTPS---SPSYSPSSPSYSPTSPKY--------TPT 339

Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
           + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 340 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 393

Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
           P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 394 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 447

Query: 518 S 520
           S
Sbjct: 448 S 448

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 319 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 363

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
           Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 364 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 417

Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 418 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 460

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 49/111 (44%), Positives = 63/111 (56%), Gaps = 16/111 (14%)
 Frame = +2

Query: 236 SPGM-GYSPSTPALAVSSPGYSPGYSPT-SPSVGARG--GPAAGY----ASPQSPGYVPT 391
           +PG  G+SPS    A  + G+SPGYSP  SP+ G+ G  GP++ Y        SP Y PT
Sbjct: 37  TPGAAGFSPSA---ASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT 93

Query: 392 SPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
           SPAY    PG     +  YSP+SP+YSP SP+Y+  S      SP+Y P S
Sbjct: 94  SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS 144

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
 Frame = +2

Query: 152 PRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS---TPALAVSSPGYSP------- 301
           P  G     G   GA  ++P S A  A+    GYSP+   TP  +  SPG S        
Sbjct: 26  PGLGAAGRSGMTPGAAGFSP-SAASDASGFSPGYSPAWSPTPG-SPGSPGPSSPYIPSPG 83

Query: 302 -----GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPA 460
                 YSPTSP+   R   + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+
Sbjct: 84  GAMSPSYSPTSPAYEPR---SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPS 139

Query: 461 YSPFSPNYAAASSPAYQPPS 520
           YSP SP+Y + +SP+Y P S
Sbjct: 140 YSPTSPSY-SPTSPSYSPTS 158

[84][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 17 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B26
          Length = 1684

 Score =  105 bits (263), Expect = 1e-21
 Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 4/166 (2%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
            S++ A    +PG  TP        +P  SP SP Y+  SP +        +  + +Y+P 
Sbjct: 1490 STSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTSPSYSPT 1541

Query: 215  SPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYV 385
            SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y 
Sbjct: 1542 SPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYS 1595

Query: 386  PTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1596 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1640

 Score =  101 bits (251), Expect = 4e-20
 Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1549 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1595

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+  RP   
Sbjct: 1596 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1651

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              + + YSP+SP+YSP SPNY    SP Y P S
Sbjct: 1652 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1682

 Score = 97.4 bits (241), Expect = 5e-19
 Identities = 63/151 (41%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
 Frame = +2

Query: 80   PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 259
            PG   AGR        SP Y   SP       GG    + +Y+P SP+Y  TSP   YSP
Sbjct: 1481 PGLGAAGR-----ESTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSP 1526

Query: 260  STPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
            ++P  + +SP Y   SP YSPTSPS      P +   SP SP Y PTSP+Y+      + 
Sbjct: 1527 TSPNYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1582

Query: 431  AN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1583 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1612

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1563 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1609

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP  P Y PTSP+Y+   P   
Sbjct: 1610 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1665

Query: 422  VAAANVYSPSSPAYSPFSPN 481
              + N Y+P SP YSP SPN
Sbjct: 1666 PTSPN-YTPMSPNYSPTSPN 1684

[85][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 16 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B25
          Length = 1752

 Score =  105 bits (263), Expect = 1e-21
 Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 4/166 (2%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
            S++ A    +PG  TP        +P  SP SP Y+  SP +        +  + +Y+P 
Sbjct: 1490 STSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTSPSYSPT 1541

Query: 215  SPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYV 385
            SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P +   SP SP Y 
Sbjct: 1542 SPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYS 1595

Query: 386  PTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1596 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1640

 Score =  104 bits (260), Expect = 3e-21
 Identities = 66/154 (42%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1549 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1595

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+  RP   
Sbjct: 1596 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1651

Query: 422  VAAANVYSPSSPAYSPFSPNYA-AASSPAYQPPS 520
              + + YSP+SP+YSP SPNY  + SSP+Y P S
Sbjct: 1652 PTSPS-YSPTSPSYSPTSPNYTYSPSSPSYSPTS 1684

 Score = 97.4 bits (241), Expect = 5e-19
 Identities = 63/151 (41%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
 Frame = +2

Query: 80   PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 259
            PG   AGR        SP Y   SP       GG    + +Y+P SP+Y  TSP   YSP
Sbjct: 1481 PGLGAAGR-----ESTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSP 1526

Query: 260  STPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
            ++P  + +SP Y   SP YSPTSPS      P +   SP SP Y PTSP+Y+      + 
Sbjct: 1527 TSPNYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1582

Query: 431  AN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1583 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1612

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 58/146 (39%), Positives = 76/146 (52%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +             +Y+P SP+Y  TSP   YS
Sbjct: 1619 SPSYSPT---SPSYSPTSPSYSPTSPNYSPSRPNYTPTSP-SYSPTSPSYSPTSPNYTYS 1674

Query: 257  PSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN 436
            PS+P+ + +SP  +P YSPTSP+            SP SP Y PTSP Y+         +
Sbjct: 1675 PSSPSYSPTSP--NPKYSPTSPN---------PTYSPTSPKYSPTSPTYS---PTSPKGS 1720

Query: 437  VYSPSSPAYSPFSPNYAAASSPAYQP 514
             YSP+SP YSP SP Y + +SPA  P
Sbjct: 1721 TYSPTSPGYSPTSPTY-SLTSPAISP 1745

[86][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 14 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B23
          Length = 1653

 Score =  105 bits (263), Expect = 1e-21
 Identities = 67/172 (38%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1456 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--------SPTS 1504

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
             +Y+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P +   SP
Sbjct: 1505 PSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP 1558

Query: 368  QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1559 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1609

 Score =  102 bits (255), Expect = 1e-20
 Identities = 62/145 (42%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
 Frame = +2

Query: 98   GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 277
            G  +P  SP SP Y   SP       GG    + +Y+P SP+Y  TSP   YSP++P  +
Sbjct: 1451 GAMSPSYSPTSPAYEPRSP-------GGYTPQSPSYSPTSPSYSPTSP--SYSPTSPNYS 1501

Query: 278  VSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYS 445
             +SP Y   SP YSPTSPS      P +   SP SP Y PTSP+Y+      +  +  YS
Sbjct: 1502 PTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1557

Query: 446  PSSPAYSPFSPNYAAASSPAYQPPS 520
            P+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1558 PTSPSYSPTSPSY-SPTSPSYSPTS 1581

 Score =  101 bits (251), Expect = 4e-20
 Identities = 65/153 (42%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1518 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1564

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+  RP   
Sbjct: 1565 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1620

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              + + YSP+SP+YSP SPNY    SP Y P S
Sbjct: 1621 PTSPS-YSPTSPSYSPTSPNY-TPMSPNYSPTS 1651

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1532 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1578

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP  P Y PTSP+Y+   P   
Sbjct: 1579 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPNYSPSRPNYTPTSPSYSPTSPSYS 1634

Query: 422  VAAANVYSPSSPAYSPFSPN 481
              + N Y+P SP YSP SPN
Sbjct: 1635 PTSPN-YTPMSPNYSPTSPN 1653

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 45/118 (38%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
 Frame = +2

Query: 170  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPA 349
            LG     G G +     A    +    YSP++PA    SPG   GY+P SPS        
Sbjct: 1430 LGQLAPAGTGCFDLLLDAEKCGAMSPSYSPTSPAYEPRSPG---GYTPQSPSY------- 1479

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1480 ----SPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1532

[87][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
            RepID=C5FCL2_NANOT
          Length = 1748

 Score =  105 bits (263), Expect = 1e-21
 Identities = 67/153 (43%), Positives = 85/153 (55%), Gaps = 5/153 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY- 253
            T   SPA   +   SP SPG +  SPRF       PA  + ++AP SPAY  TSPG G  
Sbjct: 1573 TSPTSPAYSPSSGYSPTSPGMSITSPRFISSPAFSPA--SPSFAPTSPAYSPTSPGYGQA 1630

Query: 254  -SPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
             SP++P+ + +SPG+SP    YSPTSPS      PA+   SP SP Y PTSPA    G  
Sbjct: 1631 QSPTSPSYSPTSPGFSPTSPSYSPTSPSFS----PASPVFSPTSPSYSPTSPALGGTGRH 1686

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            ++     SP+SP Y+P SP ++  S  AY P S
Sbjct: 1687 LSPT---SPTSPKYTPTSPGWSPTSPEAYSPTS 1716

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 65/189 (34%), Positives = 93/189 (49%), Gaps = 26/189 (13%)
 Frame = +2

Query: 32   MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
            +SS D   + +P R     +  G F     P+  G++   PR  GG G  P+      +P
Sbjct: 1519 ISSPDPDSQFSPVRQAGSENAVG-FADYQPPSYGGFSPHEPRSPGG-GYSPSSPFNT-SP 1575

Query: 212  ASPAYMATSPGMGYSPSTPALAVSSPGY----------------SPGYSPTSPSVGARGG 343
             SPAY   SP  GYSP++P ++++SP +                SP YSPTSP  G    
Sbjct: 1576 TSPAY---SPSSGYSPTSPGMSITSPRFISSPAFSPASPSFAPTSPAYSPTSPGYGQAQS 1632

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSP---------NYAAA 493
            P +   SP SPG+ PTSP+Y+      + A+ V+SP+SP+YSP SP         +  + 
Sbjct: 1633 PTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPTSP 1692

Query: 494  SSPAYQPPS 520
            +SP Y P S
Sbjct: 1693 TSPKYTPTS 1701

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGG---GLGGG 181
            T+  SP  S +      +PG      SP    +P  SPASP +A  SP +     G G  
Sbjct: 1573 TSPTSPAYSPSSGYSPTSPGMSIT--SPRFISSPAFSPASPSFAPTSPAYSPTSPGYGQA 1630

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---- 340
             +  + +Y+P SP +  TSP   YSP++P+ + +SP +SP    YSPTSP++G  G    
Sbjct: 1631 QSPTSPSYSPTSPGFSPTSPS--YSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLS 1688

Query: 341  --GPAAGYASPQSPGYVPTSP-AYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
               P +   +P SPG+ PTSP AY+   P    +  +   P+SP YSP SP +   S
Sbjct: 1689 PTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPTS 1745

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 54/152 (35%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGR------MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 169
            A+ SF+P   ++ A    +PG        +P  SP    +P  SP SP Y+  SP F   
Sbjct: 1609 ASPSFAP---TSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYSPTSPSFS-- 1660

Query: 170  LGGGPAGGAGAYAPASPAYMATSPGMG--------YSPSTPALAVSSPGYSP----GYSP 313
                PA  +  ++P SP+Y  TSP +G         SP++P    +SPG+SP     YSP
Sbjct: 1661 ----PA--SPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSP 1714

Query: 314  TSPSVGAR----GGPAAGYASPQSPGYVPTSP 397
            TSP+        GGP +   SP SP + PTSP
Sbjct: 1715 TSPNFSGSPTSPGGPTSPGYSPTSPTFNPTSP 1746

[88][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
          Length = 1752

 Score =  105 bits (263), Expect = 1e-21
 Identities = 68/177 (38%), Positives = 97/177 (54%), Gaps = 7/177 (3%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRF---TPRMSPASPGYAAMSPRFGGGLGGG 181
            T+ FS  MS        +    +PG S +  +   +P  SP SP Y+  SP +       
Sbjct: 1540 TSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSY------- 1592

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAA 352
             +  + +Y+P SP+Y ATSP   YSP++P+ + +SP YSP    YSPTSPS      P +
Sbjct: 1593 -SPTSPSYSPTSPSYSATSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTS 1645

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1701

 Score =  103 bits (256), Expect = 1e-20
 Identities = 66/164 (40%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
 Frame = +2

Query: 53   GRATPGRMTP---GRSPA-GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 220
            G  +PG  +P     SP  G  +P  SP+SPGY+             P   + +Y+P SP
Sbjct: 1533 GVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPT--SPSYSPTSP 1590

Query: 221  AYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
            +Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PT
Sbjct: 1591 SYSPTSPS--YSPTSPSYSATSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPT 1644

Query: 392  SPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1687

 Score =  103 bits (256), Expect = 1e-20
 Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+A SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1589 SPSYSPT---SPSYSPTSPSYSATSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1635

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1636 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1691

Query: 428  AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1722

 Score =  103 bits (256), Expect = 1e-20
 Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +  AT    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1647

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1648 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTS 1701

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1702 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1750

 Score =  102 bits (254), Expect = 2e-20
 Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 18/187 (9%)
 Frame = +2

Query: 14   ASFSPIMSSADAA----------GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG 163
            A+FSP++                G A+P +   G    G  +P  S  SPGY   SP + 
Sbjct: 1503 AAFSPLVQGGSEGREGFGDYGLLGAASPYK---GVQSPGYTSPFSSAMSPGYGLTSPSYS 1559

Query: 164  G---GLGGGPA--GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---PGYSPTS 319
                G    PA    + +Y+P SP+Y  TSP   YSP++P+ + +SP YS   P YSPTS
Sbjct: 1560 PSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSATSPSYSPTS 1617

Query: 320  PSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
            PS      P +   SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +S
Sbjct: 1618 PSYS----PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTS 1666

Query: 500  PAYQPPS 520
            P+Y P S
Sbjct: 1667 PSYSPTS 1673

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1659 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1705

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+
Sbjct: 1706 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPS 1752

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 61/158 (38%), Positives = 69/158 (43%), Gaps = 9/158 (5%)
 Frame = +2

Query: 74   MTPGRSPAGRFTP-RMSP-------ASPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAY 226
            M   + P G  TP   SP        SP  AA SP   GG  G    G  G    ASP  
Sbjct: 1473 MGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYK 1532

Query: 227  MATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
               SPG   SP + A+       SPGY  TSPS            SP SPGY  TSPAY 
Sbjct: 1533 GVQSPGYT-SPFSSAM-------SPGYGLTSPSY-----------SPSSPGY-STSPAYM 1572

Query: 407  RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                         PSSP+YSP SP+Y + +SP+Y P S
Sbjct: 1573 -------------PSSPSYSPTSPSY-SPTSPSYSPTS 1596

[89][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
            6260 RepID=UPI000151A8B3
          Length = 1018

 Score =  105 bits (262), Expect = 2e-21
 Identities = 74/173 (42%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
 Frame = +2

Query: 14   ASFSPIMSS--ADAAGRATPGRMTPGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGGP 184
            A FSPI ++  +D AG  T     PG SP        SP SP  Y A SP +GG    G 
Sbjct: 763  AGFSPIHTAPVSDGAGALTAYGGQPG-SP--------SPTSPFAYGATSPAYGGA-SPGY 812

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAG 355
               +  Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P + 
Sbjct: 813  GVTSPTYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSP 866

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 867  SYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 912

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 67/185 (36%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
 Frame = +2

Query: 26   PIMSSADAAGRATPGRMTPGRS-----------PAGRFTP-RMSPASPGYAAMSPRFGGG 169
            P+ ++  A   A  G  TP R                F+P   +P S G  A++  +GG 
Sbjct: 728  PVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGALTA-YGGQ 786

Query: 170  LGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GYSPTSPS 325
             G        AY   SPAY   SPG G     YSP++P+ + +SP YSP    YSPTSPS
Sbjct: 787  PGSPSPTSPFAYGATSPAYGGASPGYGVTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS 846

Query: 326  VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                        SP SP Y PTSP+Y             SP+SP+YSP SP+Y + +SP+
Sbjct: 847  Y-----------SPTSPSYSPTSPSY-------------SPTSPSYSPTSPSY-SPTSPS 881

Query: 506  YQPPS 520
            Y P S
Sbjct: 882  YSPTS 886

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
 Frame = +2

Query: 35   SSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
            +++ A G A+PG    +P  SP    +P  SP SP Y+  SP +        +  + +Y+
Sbjct: 800  ATSPAYGGASPGYGVTSPTYSPT---SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 855

Query: 209  PASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPG 379
            P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS            SP SP 
Sbjct: 856  PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-----------SPTSPS 902

Query: 380  YVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA 487
            Y PTSP+Y                SP ++   PN++
Sbjct: 903  YSPTSPSY----------------SPTFAKLQPNFS 922

[90][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
            RepID=UPI0000D5670C
          Length = 2007

 Score =  105 bits (262), Expect = 2e-21
 Identities = 69/155 (44%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SPR+           + +Y+P SP+Y  +SP   YS
Sbjct: 1722 SPSYSPT---SPSYSPTSPSYSPSSPRY--------TPASPSYSPTSPSYSPSSP--QYS 1768

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAY--ARPGTV 421
            P++P+ + SSP Y   SP YSPTSPS  A G P     SP SP Y PTSP Y  + P   
Sbjct: 1769 PASPSFSPSSPKYSPTSPSYSPTSPSF-AGGSP---QYSPTSPSYSPTSPNYSPSSPQHT 1824

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
             AA++ YSPSSP YSP SP+Y + +SP Y P S +
Sbjct: 1825 PAASSRYSPSSPNYSPSSPSY-SPTSPQYSPHSTK 1858

 Score =  105 bits (261), Expect = 3e-21
 Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 6/174 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  + + T   MTP        +P  SP SP Y+  SP +        +  + +
Sbjct: 1582 SPSYSPSSPSFQPTSPSMTPVSPGYSPTSPGYSPTSPNYSPTSPSYSP-TSPSYSPTSPS 1640

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYAS 364
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +   S
Sbjct: 1641 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1698

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
            P SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S R
Sbjct: 1699 PTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPSSPR 1745

 Score =  104 bits (259), Expect = 4e-21
 Identities = 73/182 (40%), Positives = 97/182 (53%), Gaps = 16/182 (8%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRM----SPASPGYAAMSPR----FGGGLGG 178
            +P + SA +        MTPG  PA  F+P      S  SPGY A SP            
Sbjct: 1520 TPYVGSAWSPHNLMGSGMTPG-GPA--FSPSAASDASGMSPGYGAWSPTPQSPAMSPFMA 1576

Query: 179  GPAGGAGAYAPASPAYMATSPGM-----GYSPSTPALAVSSPGYSP---GYSPTSPSVGA 334
             P G + +Y+P+SP++  TSP M     GYSP++P  + +SP YSP    YSPTSPS   
Sbjct: 1577 SPHGQSPSYSPSSPSFQPTSPSMTPVSPGYSPTSPGYSPTSPNYSPTSPSYSPTSPSYS- 1635

Query: 335  RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
               P +   SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1636 ---PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1685

Query: 515  PS 520
             S
Sbjct: 1686 TS 1687

 Score =  103 bits (257), Expect = 7e-21
 Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 8/175 (4%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            S+SP   S + ++ R TP   +P  SP    +P  SP+SP Y+  SP F        +  
Sbjct: 1731 SYSPTSPSYSPSSPRYTPA--SPSYSPT---SPSYSPSSPQYSPASPSF--------SPS 1777

Query: 194  AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY 358
            +  Y+P SP+Y  TSP        YSP++P+ + +SP YSP     +P+  +R  P++  
Sbjct: 1778 SPKYSPTSPSYSPTSPSFAGGSPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPN 1837

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAY--QPP 517
             SP SP Y PTSP Y+   T       YSP+SP Y+P SP+Y+ A SPAY  QPP
Sbjct: 1838 YSPSSPSYSPTSPQYSPHST------KYSPTSPTYTPTSPSYSPA-SPAYSSQPP 1885

 Score =  102 bits (254), Expect = 2e-20
 Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 7/161 (4%)
 Frame = +2

Query: 59   ATPGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
            A+P   +P  SP+       +P M+P SPGY+  SP                Y+P SP Y
Sbjct: 1576 ASPHGQSPSYSPSSPSFQPTSPSMTPVSPGYSPTSP---------------GYSPTSPNY 1620

Query: 227  MATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
              TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP
Sbjct: 1621 SPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSP 1674

Query: 398  AYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1675 SYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1708

 Score =  101 bits (251), Expect = 4e-20
 Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1631 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1677

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 1678 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYS------P 1727

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP+YSP SP Y  A SP+Y P S
Sbjct: 1728 TSPSYSPTSPSYSPSSPRYTPA-SPSYSPTS 1757

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 64/162 (39%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1687 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1733

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + SSP Y   SP YSPTSPS         PA+   SP SP Y PTSP+Y+    
Sbjct: 1734 PTSPSYSPSSPRYTPASPSYSPTSPSYSPSSPQYSPASPSFSPSSPKYSPTSPSYSPTSP 1793

Query: 419  VVAAANV--------YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              A  +         YSP+SP YSP SP +  A+S  Y P S
Sbjct: 1794 SFAGGSPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSS 1835

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 74/191 (38%), Positives = 98/191 (51%), Gaps = 19/191 (9%)
 Frame = +2

Query: 8    ATASFSPIMSS-ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            A+ S+SP   S + ++ + +P   +P  SP+   +P+ SP SP Y+  SP F        
Sbjct: 1749 ASPSYSPTSPSYSPSSPQYSPA--SPSFSPS---SPKYSPTSPSYSPTSPSF-------- 1795

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPA--------LAVSSPGYSPG---YSPTSPSVG 331
            AGG+  Y+P SP+Y  TSP   YSPS+P          + SSP YSP    YSPTSP   
Sbjct: 1796 AGGSPQYSPTSPSYSPTSPN--YSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYS 1853

Query: 332  ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSP------NYAA 490
                P +   SP SP Y PTSP+Y+      ++    YSPSSP+YSP SP       Y +
Sbjct: 1854 ----PHSTKYSPTSPTYTPTSPSYSPASPAYSSQPPRYSPSSPSYSPTSPITLPPSPYYS 1909

Query: 491  ASSPAYQPPSR 523
             SS  Y   SR
Sbjct: 1910 RSSSTYTFSSR 1920

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 10/168 (5%)
 Frame = +2

Query: 47   AAGRATPGRMTPGRSPAGRFTPRMSPASPGY-AAMSPR--FGGGLG-GGPAGGAGAYAPA 214
            A+G       TP  SP    TP    A+P   +A SP    G G+  GGPA    A + A
Sbjct: 1493 ASGMFFGSAATPSMSPGAAMTPWNQGATPYVGSAWSPHNLMGSGMTPGGPAFSPSAASDA 1552

Query: 215  S---PAYMATSPGMGYSPSTPALA--VSSP-GYSPGYSPTSPSVGARGGPAAGYASPQSP 376
            S   P Y A SP    +P +PA++  ++SP G SP YSP+SPS      P +   +P SP
Sbjct: 1553 SGMSPGYGAWSP----TPQSPAMSPFMASPHGQSPSYSPSSPSFQ----PTSPSMTPVSP 1604

Query: 377  GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            GY PTSP Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1605 GYSPTSPGYS------PTSPNYSPTSPSYSPTSPSY-SPTSPSYSPTS 1645

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 68/179 (37%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            AT S SP  +       ATP  +    SP       M+P  P ++  +     G+   P 
Sbjct: 1502 ATPSMSPGAAMTPWNQGATP-YVGSAWSPHNLMGSGMTPGGPAFSPSAASDASGMS--PG 1558

Query: 188  GGAGAYAPASPA---YMATSPGMG--YSPSTPALAVSSPGY---SPGYSPTSPSVGARGG 343
             GA +  P SPA   +MA+  G    YSPS+P+   +SP     SPGYSPTSP       
Sbjct: 1559 YGAWSPTPQSPAMSPFMASPHGQSPSYSPSSPSFQPTSPSMTPVSPGYSPTSP------- 1611

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               GY SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1612 ---GY-SPTSPNYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1659

[91][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B2B
          Length = 1892

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1577 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1632

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1633 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1690

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+ +      +SP+Y P 
Sbjct: 1691 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1750

Query: 518  S 520
            S
Sbjct: 1751 S 1751

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 64/159 (40%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1632 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1678

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+   P   
Sbjct: 1679 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPNYS 1734

Query: 422  VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
             +  N Y+P+SP+YSP SP+Y+  S      SP+Y P S
Sbjct: 1735 PSRPN-YTPTSPSYSPTSPSYSPTSPKYTPTSPSYSPSS 1772

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP++           + +
Sbjct: 1716 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPKY--------TPTSPS 1767

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
            Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   SP S
Sbjct: 1768 YSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTS 1821

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
            P Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P S
Sbjct: 1822 PVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 1873

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1744 SPSYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1788

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1789 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1842

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1843 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1885

 Score = 90.9 bits (224), Expect = 5e-17
 Identities = 60/150 (40%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
 Frame = +2

Query: 89   SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            SP G  +P M+P    A+P Y A SP  G G+  G AG    ++P+     A S   G+S
Sbjct: 1503 SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG----FSPS-----AASDASGFS 1553

Query: 257  PSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP--GTVVAA 430
            P          GYSP +SPT  S G+ GG  +   SP SP Y P SP    P   +    
Sbjct: 1554 P----------GYSPAWSPTPGSPGSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPT 1603

Query: 431  ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +  YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1604 SPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1632

[92][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 9 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1E
          Length = 1851

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1529 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1584

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1585 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1642

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPP 517
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY+ +      +SP+Y P 
Sbjct: 1643 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPT 1702

Query: 518  S 520
            S
Sbjct: 1703 S 1703

 Score =  100 bits (250), Expect = 5e-20
 Identities = 65/159 (40%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1591 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1637

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+  RP   
Sbjct: 1638 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPNYSPSRPNYT 1693

Query: 422  VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              + + YSP+SP+YSP SP+Y+  S      SP+Y P S
Sbjct: 1694 PTSPS-YSPTSPSYSPSSPSYSPTSPKYTPTSPSYSPSS 1731

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 65/170 (38%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP               +
Sbjct: 1668 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPSSP---------------S 1712

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSPS+P    +SP Y   SP YSPTSP    +  P +   SP +
Sbjct: 1713 YSPTSPKYTPTSP--SYSPSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTT 1766

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP Y+    V    +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1767 PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1815

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 2/166 (1%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAGGAGAY 205
            I ++    G A     +PG SPA   TP  SP SPG ++   P  GG +       + +Y
Sbjct: 1479 IPTNIPGLGAAGRDGFSPGYSPAWSPTPG-SPGSPGPSSPYIPSPGGAM-------SPSY 1530

Query: 206  APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYV 385
            +P SPAY   SPG GY+P +P+ + +SP YSP    TSPS            SP SP Y 
Sbjct: 1531 SPTSPAYEPRSPG-GYTPQSPSYSPTSPSYSP----TSPSY-----------SPTSPNYS 1574

Query: 386  PTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1575 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1619

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1703 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1747

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1748 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1801

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1802 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1844

[93][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B0A92
          Length = 1714

 Score =  105 bits (262), Expect = 2e-21
 Identities = 75/191 (39%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGR----SPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            + FSP  S A +    +PG   P      SP G  +P  SP SP Y   SP       GG
Sbjct: 1532 SGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSP-------GG 1584

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---------GYSPTSPSVGA 334
                +  Y+P SP+Y  TSP   YSP++P+ + +SP YSP          YSPTSPS   
Sbjct: 1585 YTPQSPGYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSGPTSPSYSPTSPSY-- 1640

Query: 335  RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAA------NVYS-PSSPAYSPFSPNYAAA 493
               P +   SP SP Y PTSP Y  P  +V  +      +VYS P+SP YSP SP  +  
Sbjct: 1641 --SPTSPSYSPTSPSYSPTSPNYTPPHQLVPTSPYTPHISVYSPPTSPTYSPTSPKGSTY 1698

Query: 494  S--SPAYQPPS 520
            S  SP Y P S
Sbjct: 1699 SPTSPGYSPTS 1709

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 73/170 (42%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAG 190
            A FSP  +S DA+G       +PG SPA   TP  SP SPG A+   P  GG +      
Sbjct: 1521 AGFSPSAAS-DASG------FSPGYSPAWSPTPG-SPGSPGPASPYIPSPGGAMSPN--- 1569

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
                Y+P SPAY   SPG GY+P            SPGYSPTSPS      P +   SP 
Sbjct: 1570 ----YSPTSPAYEPRSPG-GYTPQ-----------SPGYSPTSPSYS----PTSPSYSPT 1609

Query: 371  SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1610 SPSYSPTSPSYSPTSPSGPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1658

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 50/135 (37%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P  SP+G  +P  SP SP Y+  SP               +
Sbjct: 1603 SPSYSPTSPSYSPTSPSYSP-TSPSGPTSPSYSPTSPSYSPTSP---------------S 1646

Query: 203  YAPASPAYMATSPG-------MGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
            Y+P SP+Y  TSP        +  SP TP ++V SP  SP YSPTSP             
Sbjct: 1647 YSPTSPSYSPTSPNYTPPHQLVPTSPYTPHISVYSPPTSPTYSPTSPK--------GSTY 1698

Query: 362  SPQSPGYVPTSPAYA 406
            SP SPGY PTSP Y+
Sbjct: 1699 SPTSPGYSPTSPTYS 1713

[94][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
            RepID=A8IRZ2_CHLRE
          Length = 1789

 Score =  105 bits (262), Expect = 2e-21
 Identities = 72/163 (44%), Positives = 85/163 (52%), Gaps = 10/163 (6%)
 Frame = +2

Query: 62   TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------GPAGGAGAYAPASPA 223
            TPGRMTP RSPA    P MSP+       SP  G G          PA G G   P SP 
Sbjct: 1491 TPGRMTPSRSPARTPGP-MSPSHLLSPMHSPFVGSGFSPMHPGAFSPAHGGGVGGPMSP- 1548

Query: 224  YMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
                    GYSP++P  + +SP Y   SP YSPTSP+      P +   SP SP Y PTS
Sbjct: 1549 --------GYSPTSPGYSPTSPRYSPTSPAYSPTSPAY----SPTSPAYSPTSPAYSPTS 1596

Query: 395  PAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            PAY+      +  +  YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 1597 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 1638

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 60/158 (37%), Positives = 75/158 (47%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1575 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1626

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGY 382
            Y+P SPAY  TSP   YSP++PA + +SP YSP YSPTSP             SP SP  
Sbjct: 1627 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPAYSPTSPQY-----------SPTSPSM 1673

Query: 383  VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
             PTSP              YSP+SP YSP SPNY+ ++
Sbjct: 1674 SPTSPR-------------YSPTSPNYSPTSPNYSPST 1698

[95][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R4Y0_PICPG
          Length = 1743

 Score =  105 bits (262), Expect = 2e-21
 Identities = 68/172 (39%), Positives = 93/172 (54%), Gaps = 6/172 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SP   ++      +PG    +PG +P    +PR SP SPGY+  SP +        +  +
Sbjct: 1523 SPYQPTSPGLSATSPGFAPTSPGFAPT---SPRYSPTSPGYSPTSPSYSP-TSPSYSPTS 1578

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP
Sbjct: 1579 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPQYSP 1632

Query: 368  QSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP Y PTSP Y+      +  +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1633 TSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1683

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 9/165 (5%)
 Frame = +2

Query: 53   GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA 232
            G+AT G  TP  + A ++    +         SP    G G   +GG   YA     Y  
Sbjct: 1469 GKATQGSATPYDNNA-QYDDEFNHDDVADVMFSPMAETGSGDDRSGGLTEYAGIQSPYQP 1527

Query: 233  TSPGM-----GYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVP 388
            TSPG+     G++P++P  A +SP YSP   GYSPTSPS      P +   SP SP Y P
Sbjct: 1528 TSPGLSATSPGFAPTSPGFAPTSPRYSPTSPGYSPTSPSYS----PTSPSYSPTSPSYSP 1583

Query: 389  TSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            TSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1584 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1627

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 61/149 (40%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP++        +  +  Y+P SP Y  TSP   YS
Sbjct: 1606 SPSYSPT---SPSYSPTSPSYSPTSPQY--------SPTSPQYSPTSPQYSPTSPQ--YS 1652

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P  + +SP YSP    YSPTSP       P +   SP SP Y PTSP Y+       
Sbjct: 1653 PTSPQYSPTSPQYSPTSPQYSPTSPQYS----PTSPQYSPTSPQYSPTSPQYS------P 1702

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQP 514
             +  YSP+SP YSP SP Y+ A SP Y P
Sbjct: 1703 TSPQYSPTSPQYSPTSPQYSPA-SPQYSP 1730

 Score = 73.9 bits (180), Expect = 6e-12
 Identities = 56/158 (35%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T  + +P        +P+ SP SP Y+  SP++        +  +  
Sbjct: 1613 SPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY--------SPTSPQ 1664

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP++P  + +SP YSP    YSPTSP             SP S
Sbjct: 1665 YSPTSPQYSPTSPQ--YSPTSPQYSPTSPQYSPTSPQYSPTSPQY-----------SPTS 1711

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSP--FSPN 481
            P Y PTSP              YSP+SP YSP   SPN
Sbjct: 1712 PQYSPTSPQ-------------YSPASPQYSPSRHSPN 1736

[96][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
            briggsae RepID=RPB1_CAEBR
          Length = 1853

 Score =  105 bits (262), Expect = 2e-21
 Identities = 73/181 (40%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG--YAAMSPRFGGGLGG 178
            N +  +SP    + +AG +  G +  G SP        SPASPG    A+SPR     G 
Sbjct: 1516 NYSGPWSPTGGMSPSAGFSPAGNLDGGASPFNE--GGWSPASPGDPLGALSPRTPAYGGM 1573

Query: 179  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY------SPGYSPTSPSVGARG 340
             P    G Y+PASP +  TSP   YSP++P+ + +SP +      SP YSPTSPS     
Sbjct: 1574 SP----GVYSPASPGFSMTSPH--YSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYS--- 1624

Query: 341  GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPP 517
             P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + SSP Y P 
Sbjct: 1625 -PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPSSPRYSPT 1682

Query: 518  S 520
            S
Sbjct: 1683 S 1683

 Score =  104 bits (260), Expect = 3e-21
 Identities = 65/152 (42%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-GY 253
            +P  SP+   +PR SP SP Y+  SP +        +  +  Y+P SP Y  TSP   GY
Sbjct: 1669 SPSYSPS---SPRYSPTSPTYSPTSPTY--------SPTSPTYSPTSPTYSPTSPSYEGY 1717

Query: 254  SPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV 424
            SPS+P  + SSP YSP    YSPTSP       P +   SP SP Y P+SP Y       
Sbjct: 1718 SPSSPKYSPSSPTYSPTSPSYSPTSPQYS----PTSPQYSPSSPTYTPSSPTYNPTSPRA 1773

Query: 425  AAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             ++  YSP+SP YSP SP+Y   SSP Y P S
Sbjct: 1774 FSSPQYSPTSPTYSPTSPSY-TPSSPQYSPTS 1804

 Score =  101 bits (252), Expect = 3e-20
 Identities = 64/162 (39%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
 Frame = +2

Query: 47   AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
            A G  +PG  +P        +P  SP SP Y+  SP   G             +P SP+Y
Sbjct: 1569 AYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSPAHHG------------QSPVSPSY 1616

Query: 227  MATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
              TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP
Sbjct: 1617 SPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSP 1670

Query: 398  AYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +Y+      +  +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1671 SYSPSSPRYSPTSPTYSPTSPTYSPTSPTY-SPTSPTYSPTS 1711

 Score = 97.4 bits (241), Expect = 5e-19
 Identities = 70/186 (37%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP--AGGA 196
            SP  S +      T    +P        +P  SP SP Y+  SP + G     P  +  +
Sbjct: 1669 SPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSS 1728

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASP 367
              Y+P SP+Y  TSP   YSP++P  + SSP Y   SP Y+PTSP    R   +  Y SP
Sbjct: 1729 PTYSPTSPSYSPTSPQ--YSPTSPQYSPSSPTYTPSSPTYNPTSP----RAFSSPQY-SP 1781

Query: 368  QSPGYVPTSPAYA---------------RPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
             SP Y PTSP+Y                 P      +N YSPSSP YSP SP Y+ A SP
Sbjct: 1782 TSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPSSPTYSPSSPTYSPA-SP 1840

Query: 503  AYQPPS 520
            +Y P S
Sbjct: 1841 SYSPSS 1846

 Score = 81.3 bits (199), Expect = 4e-14
 Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            ++SP   S +    ++P + +P        +P  SP SP Y+  SP++        +  +
Sbjct: 1706 TYSPTSPSYEGYSPSSP-KYSPSSPTYSPTSPSYSPTSPQYSPTSPQY--------SPSS 1756

Query: 197  GAYAPASPAYMATSP----GMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAG 355
              Y P+SP Y  TSP       YSP++P  + +SP Y   SP YSPTSP+         G
Sbjct: 1757 PTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPG 1816

Query: 356  YA---SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
             +   SP SP Y P+SP Y+       A+  YSPSSP Y P
Sbjct: 1817 TSNQYSPSSPTYSPSSPTYS------PASPSYSPSSPTYDP 1851

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
 Frame = +2

Query: 89   SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 268
            SP+  F+P  SP + G   ++P + G     P GG              SP  G+SP+  
Sbjct: 1497 SPSREFSPAHSPWNSG---VTPNYSGPWS--PTGGM-------------SPSAGFSPAGN 1538

Query: 269  ALAVSSPGYSPGYSPTSPS---------VGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
                +SP    G+SP SP            A GG + G  SP SPG+  TSP Y+     
Sbjct: 1539 LDGGASPFNEGGWSPASPGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSPHYSPTSPS 1598

Query: 422  VAAAN-----------VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  +            YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1599 YSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1641

[97][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
            RepID=UPI000186D846
          Length = 1885

 Score =  105 bits (261), Expect = 3e-21
 Identities = 73/187 (39%), Positives = 98/187 (52%), Gaps = 26/187 (13%)
 Frame = +2

Query: 38   SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA---------- 187
            S  A    TPG   P  SP+G  +   S  SPGY+  SP+ G     GP+          
Sbjct: 1505 SPHAGSGMTPGG--PSFSPSG--SSDASGLSPGYSPWSPQPGSPSSPGPSNSPYVPSPGG 1560

Query: 188  GGAGAYAPASPAYMATSPGM-----GYSPSTPALAVSSPGYSPG----------YSPTSP 322
            G + +Y+P+SPA+  TSP M      YSP++P+ + SSP YSP           YSPTSP
Sbjct: 1561 GMSPSYSPSSPAFAPTSPSMTPTSSNYSPTSPSYSPSSPNYSPNSPSYSPTSPSYSPTSP 1620

Query: 323  SVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASS 499
            S      P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +S
Sbjct: 1621 SY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTS 1675

Query: 500  PAYQPPS 520
            P+Y P S
Sbjct: 1676 PSYSPTS 1682

 Score =  104 bits (259), Expect = 4e-21
 Identities = 73/175 (41%), Positives = 102/175 (58%), Gaps = 7/175 (4%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM-SPASPG--YAAMSPRFGGGLGGGPA 187
            SFSP   S+DA+G      ++PG SP   ++P+  SP+SPG   +   P  GGG+    +
Sbjct: 1518 SFSP-SGSSDASG------LSPGYSP---WSPQPGSPSSPGPSNSPYVPSPGGGMSPSYS 1567

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
              + A+AP SP+   TS    YSP++P+ + SSP Y   SP YSPTSPS      P +  
Sbjct: 1568 PSSPAFAPTSPSMTPTS--SNYSPTSPSYSPSSPNYSPNSPSYSPTSPSY----SPTSPS 1621

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1622 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1675

 Score =  101 bits (252), Expect = 3e-20
 Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1626 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1672

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y P SP+++    
Sbjct: 1673 PTSPSYSPTSPSYSPTSPSYSPTSPSYSRTSPSYSPTSPSYSPSSPNYTPASPSFSPTSP 1732

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             + ++  YSP+SP+YSP SP Y + +SP+Y P S
Sbjct: 1733 SLYSSPRYSPASPSYSPGSPKY-SPTSPSYSPTS 1765

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 68/178 (38%), Positives = 88/178 (49%), Gaps = 7/178 (3%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A+ SFSP   S  ++ R +P   +P  SP    +P+ SP SP Y+  SP +        A
Sbjct: 1723 ASPSFSPTSPSLYSSPRYSPA--SPSYSPG---SPKYSPTSPSYSPTSPSY--------A 1769

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG----YSPTSPSVGARG---GP 346
              +  Y P SP Y  TSP   YSP++P+ + SSP ++PG    YSPTSP          P
Sbjct: 1770 SVSPQYTPTSPQYSPTSPT--YSPTSPSYSPSSPSHTPGASTRYSPTSPKYSPTSLSYSP 1827

Query: 347  AAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            A+   SP S  Y PTSP Y         +  YS SSP YSP  P   + +SP Y P S
Sbjct: 1828 ASPQYSPSSSKYSPTSPTYT------PTSPDYSASSPTYSPTGPPSYSPTSPTYSPTS 1879

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 67/183 (36%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P      R +P  SP SP Y+  SP                
Sbjct: 1675 SPSYSPTSPSYSPTSPSYSPTSPSYSRTSPSYSPTSPSYSPSSPN--------------- 1719

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSP----------SVGARGG 343
            Y PASP++  TSP +    S+P  + +SP YSPG   YSPTSP          SV  +  
Sbjct: 1720 YTPASPSFSPTSPSLY---SSPRYSPASPSYSPGSPKYSPTSPSYSPTSPSYASVSPQYT 1776

Query: 344  PAAGYASPQSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
            P +   SP SP Y PTSP+Y  + P     A+  YSP+SP YSP S +Y+ A SP Y P 
Sbjct: 1777 PTSPQYSPTSPTYSPTSPSYSPSSPSHTPGASTRYSPTSPKYSPTSLSYSPA-SPQYSPS 1835

Query: 518  SRR 526
            S +
Sbjct: 1836 SSK 1838

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 58/159 (36%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
 Frame = +2

Query: 74   MTPGRSPAGRFTPRMSPASPGY-AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 250
            +TP  SP  + TP     +P Y +A SP  G G+  G                    G  
Sbjct: 1481 VTPSMSP--QMTPWNQGETPAYVSAWSPHAGSGMTPG--------------------GPS 1518

Query: 251  YSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA----SP---QSPGYVPTSPAYA- 406
            +SPS  +    + G SPGYSP SP  G+   P    +    SP    SP Y P+SPA+A 
Sbjct: 1519 FSPSGSS---DASGLSPGYSPWSPQPGSPSSPGPSNSPYVPSPGGGMSPSYSPSSPAFAP 1575

Query: 407  -RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              P     ++N YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1576 TSPSMTPTSSN-YSPTSPSYSPSSPNY-SPNSPSYSPTS 1612

[98][TOP]
>UniRef100_A7AWJ0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AWJ0_BABBO
          Length = 1746

 Score =  105 bits (261), Expect = 3e-21
 Identities = 72/187 (38%), Positives = 95/187 (50%), Gaps = 19/187 (10%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM---SPASPGYAAMSPRFGGGLGGGPA 187
            SFSP + S  +    +   ++P        +P M   SP SP Y+  SP +G   GG  +
Sbjct: 1545 SFSPTIMSPQSPVSPSYAPLSPNPLSPNPLSPSMGMMSPTSPVYSPTSPVYGQA-GGVYS 1603

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPA 349
              + AY+P SP Y  TSP   YSP++PA + +SP YSP    YSPTSP+         P 
Sbjct: 1604 PASPAYSPTSPLYSPTSPV--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1661

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVA----------AANVYSPSSPAYSPFSPNYAAASS 499
            +   SP SP Y PTSPAY+     +            +  YSP+SPAYSP SP Y + +S
Sbjct: 1662 SPAYSPTSPAYSPTSPAYSPTSPNLGYLPTSPAYRPTSPAYSPTSPAYSPTSPAY-SPTS 1720

Query: 500  PAYQPPS 520
            P Y P S
Sbjct: 1721 PVYSPTS 1727

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP+ S          G  +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1585 SPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTSPVYSPTSPAY--------SPTSPA 1636

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP+      P  GY  P S
Sbjct: 1637 YSPTSPAYSPTSPA--YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS-PNLGYL-PTS 1692

Query: 374  PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYA 487
            P Y PTSPAY+      +  +  YSP+SP YSP SP Y+
Sbjct: 1693 PAYRPTSPAYSPTSPAYSPTSPAYSPTSPVYSPTSPEYS 1731

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 70/182 (38%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM----SPASPGYAAMSPRFGGGLG 175
            A    SPI++ +  +   +P   T  ++  G F+P +    SP SP YA +SP     L 
Sbjct: 1516 AALMMSPIVNVSSPSFVTSPAVDT--KALGGSFSPTIMSPQSPVSPSYAPLSPN---PLS 1570

Query: 176  GGPAGGA-GAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPGYSPTSPSVGAR 337
              P   + G  +P SP Y  TSP  G     YSP++PA + +SP YSP    TSP     
Sbjct: 1571 PNPLSPSMGMMSPTSPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSP----TSPVY--- 1623

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQP 514
                    SP SP Y PTSPAY+      +  +  YSP+SPAYSP SP Y + +SPAY P
Sbjct: 1624 --------SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSP 1674

Query: 515  PS 520
             S
Sbjct: 1675 TS 1676

 Score = 86.7 bits (213), Expect = 9e-16
 Identities = 59/156 (37%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP+ S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 1620 SPVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 1671

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGY 382
            Y+P SPAY  TSP +GY P++PA   +    SP YSPTSP+            SP SP Y
Sbjct: 1672 YSPTSPAYSPTSPNLGYLPTSPAYRPT----SPAYSPTSPAY-----------SPTSPAY 1716

Query: 383  VPTSPAYARPGTVVAAANVYSPSSPAYS---PFSPN 481
             PTSP             VYSP+SP YS   PFSPN
Sbjct: 1717 SPTSP-------------VYSPTSPEYSPEDPFSPN 1739

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 62/176 (35%), Positives = 81/176 (46%), Gaps = 12/176 (6%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPA--SPGYAA--MSPRFGGGLGGGPAGGA 196
            IM  +  +G  +P   +P      +    +SP   SP YAA  MSP             +
Sbjct: 1477 IMPDSALSGFTSPESTSPDSMSPAKINSMLSPLPFSPSYAALMMSPI---------VNVS 1527

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARG--GPAAGYASPQ 370
                  SPA    + G  +SP+   ++  SP  SP Y+P SP+  +     P+ G  SP 
Sbjct: 1528 SPSFVTSPAVDTKALGGSFSPTI--MSPQSP-VSPSYAPLSPNPLSPNPLSPSMGMMSPT 1584

Query: 371  SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
            SP Y PTSP Y + G       VYSP+SPAYSP SP Y+  S      SPAY P S
Sbjct: 1585 SPVYSPTSPVYGQAG------GVYSPASPAYSPTSPLYSPTSPVYSPTSPAYSPTS 1634

[99][TOP]
>UniRef100_C6HNU4 DNA-directed RNA polymerase II n=1 Tax=Ajellomyces capsulatus H143
           RepID=C6HNU4_AJECH
          Length = 668

 Score =  105 bits (261), Expect = 3e-21
 Identities = 73/185 (39%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
 Frame = +2

Query: 14  ASFSPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSP 154
           A F+    S  + G +  G  +PG   SP+  F     +PR SP+S      PG +  SP
Sbjct: 460 AGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSP 519

Query: 155 RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
           RF    G  PA  + A+AP SPAY  TSP    SP++P+ + +SPG+   SP YSPTSPS
Sbjct: 520 RFMSSPGFSPA--SPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPS 577

Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                 PA+   SP SP Y PTSPA     +     +  SP+SP Y+P SP ++  S   
Sbjct: 578 F----SPASPAFSPTSPSYSPTSPALG--VSTGRHLSPTSPTSPKYTPTSPGWSPTSPET 631

Query: 506 YQPPS 520
           Y P S
Sbjct: 632 YSPTS 636

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
           A A  SP  S    + + +P   +P  SP    +P  SP SP Y+  SP F       PA
Sbjct: 533 AFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS------PA 581

Query: 188 GGAGAYAPASPAYMATSPGMGYS---------PSTPALAVSSPGYSPG----YSPTSPSV 328
             + A++P SP+Y  TSP +G S         P++P    +SPG+SP     YSPTSP+ 
Sbjct: 582 --SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNF 639

Query: 329 GARGGPAAGYASPQSPGYVPTSPAY 403
               G       P SPGY PTSP +
Sbjct: 640 S---GSPTSPGGPTSPGYSPTSPTF 661

[100][TOP]
>UniRef100_C5DXL0 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732
            RepID=C5DXL0_ZYGRC
          Length = 1744

 Score =  105 bits (261), Expect = 3e-21
 Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 7/158 (4%)
 Frame = +2

Query: 68   GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 247
            G  +PG SP+   +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP  
Sbjct: 1532 GVSSPGFSPS---SPTYSPTSPSYSPTSPSYSPP-SPNYSPTSPSYSPTSPSYSPTSPS- 1586

Query: 248  GYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYAR 409
             YSP++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y+ 
Sbjct: 1587 -YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1645

Query: 410  PGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
                 +  +  YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1682

 Score =  102 bits (253), Expect = 2e-20
 Identities = 63/151 (41%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1605 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1651

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 1652 PTSPSYSPTSPSYSPTSPNYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS------P 1701

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP+YSP SPNY +  SP Y P S
Sbjct: 1702 TSPSYSPTSPSYSPTSPNY-SPGSPTYSPSS 1731

 Score =  100 bits (249), Expect = 6e-20
 Identities = 68/176 (38%), Positives = 92/176 (52%), Gaps = 9/176 (5%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            FSP++ S      A  G  T     +  F       S G A +SP FGG    G +  + 
Sbjct: 1492 FSPLVDSGSTDAMA--GGFTAYGGGSASF------GSYGDAPISPGFGGVSSPGFSPSSP 1543

Query: 200  AYAPASPAYMATSPGM-----GYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAG 355
             Y+P SP+Y  TSP        YSP++P+ + +SP Y   SP YSPTSPS      P + 
Sbjct: 1544 TYSPTSPSYSPTSPSYSPPSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSP 1599

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1654

 Score = 90.9 bits (224), Expect = 5e-17
 Identities = 58/139 (41%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1612 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1658

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+   P   
Sbjct: 1659 PTSPSYSPTSPNYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1714

Query: 422  VAAANVYSPSSPAYSPFSP 478
              + N YSP SP YSP SP
Sbjct: 1715 PTSPN-YSPGSPTYSPSSP 1732

[101][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
            RepID=C0NEY2_AJECG
          Length = 1234

 Score =  105 bits (261), Expect = 3e-21
 Identities = 73/185 (39%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSP 154
            A F+    S  + G +  G  +PG   SP+  F     +PR SP+S      PG +  SP
Sbjct: 1026 AGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSP 1085

Query: 155  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
            RF    G  PA  + A+AP SPAY  TSP    SP++P+ + +SPG+   SP YSPTSPS
Sbjct: 1086 RFMSSPGFSPA--SPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPS 1143

Query: 326  VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                  PA+   SP SP Y PTSPA     +     +  SP+SP Y+P SP ++  S   
Sbjct: 1144 F----SPASPAFSPTSPSYSPTSPALG--VSTGRHLSPTSPTSPKYTPTSPGWSPTSPET 1197

Query: 506  YQPPS 520
            Y P S
Sbjct: 1198 YSPTS 1202

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A A  SP  S    + + +P   +P  SP    +P  SP SP Y+  SP F       PA
Sbjct: 1099 AFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS------PA 1147

Query: 188  GGAGAYAPASPAYMATSPGMGYS---------PSTPALAVSSPGYSPG----YSPTSPSV 328
              + A++P SP+Y  TSP +G S         P++P    +SPG+SP     YSPTSP+ 
Sbjct: 1148 --SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNF 1205

Query: 329  GARGGPAAGYASPQSPGYVPTSPAY 403
                G       P SPGY PTSP +
Sbjct: 1206 S---GSPTSPGGPTSPGYSPTSPTF 1227

[102][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
            RepID=A6QYA7_AJECN
          Length = 1747

 Score =  105 bits (261), Expect = 3e-21
 Identities = 73/185 (39%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGR--SPAGRF-----TPRMSPAS------PGYAAMSP 154
            A F+    S  + G +  G  +PG   SP+  F     +PR SP+S      PG +  SP
Sbjct: 1539 AGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSP 1598

Query: 155  RFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
            RF    G  PA  + A+AP SPAY  TSP    SP++P+ + +SPG+   SP YSPTSPS
Sbjct: 1599 RFMSSPGFSPA--SPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPS 1656

Query: 326  VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                  PA+   SP SP Y PTSPA     +     +  SP+SP Y+P SP ++  S   
Sbjct: 1657 F----SPASPAFSPTSPSYSPTSPALG--VSTGRHLSPTSPTSPKYTPTSPGWSPTSPET 1710

Query: 506  YQPPS 520
            Y P S
Sbjct: 1711 YSPTS 1715

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A A  SP  S    + + +P   +P  SP    +P  SP SP Y+  SP F       PA
Sbjct: 1612 AFAPTSPAYSPTSPSYQQSP--TSPSYSPT---SPGFSPTSPSYSPTSPSFS------PA 1660

Query: 188  GGAGAYAPASPAYMATSPGMGYS---------PSTPALAVSSPGYSPG----YSPTSPSV 328
              + A++P SP+Y  TSP +G S         P++P    +SPG+SP     YSPTSP+ 
Sbjct: 1661 --SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNF 1718

Query: 329  GARGGPAAGYASPQSPGYVPTSPAY 403
                G       P SPGY PTSP +
Sbjct: 1719 S---GSPTSPGGPTSPGYSPTSPTF 1740

[103][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
            A isoform 10 n=1 Tax=Canis lupus familiaris
            RepID=UPI00005A0B1F
          Length = 1840

 Score =  104 bits (260), Expect = 3e-21
 Identities = 64/166 (38%), Positives = 89/166 (53%), Gaps = 13/166 (7%)
 Frame = +2

Query: 62   TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP 241
            +PG  TP        +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP
Sbjct: 1537 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTSPSYSPTSPSYSPTSP 1595

Query: 242  GMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAY 403
               YSP++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y
Sbjct: 1596 S--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1653

Query: 404  ARPGTVVAAANV-YSPSSPAYSPFSPNYAAA------SSPAYQPPS 520
            +      +  +  YSP+SP+YSP SPNY+ +      +SP+Y P S
Sbjct: 1654 SPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTS 1699

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 64/159 (40%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1580 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1626

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+   P   
Sbjct: 1627 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPNYS 1682

Query: 422  VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
             +  N Y+P+SP+YSP SP+Y+  S      SP+Y P S
Sbjct: 1683 PSRPN-YTPTSPSYSPTSPSYSPTSPKYTPTSPSYSPSS 1720

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 61/152 (40%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP+ P Y   SP +        +  + +Y+P SP Y  TSP   YS
Sbjct: 1671 SPSYSPT---SPNYSPSRPNYTPTSPSY--------SPTSPSYSPTSPKYTPTSP--SYS 1717

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            PS+P    +SP Y   SP YSPTSP    +  P +   SP +P Y PTSP Y+    V  
Sbjct: 1718 PSSPEYTPTSPKYSPTSPKYSPTSP----KYSPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1773

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1774 PTSPKYSPTSPTYSPTSPKY-SPTSPTYSPTS 1804

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P R      +P  SP SP Y+  SP++           + +
Sbjct: 1664 SPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPKY--------TPTSPS 1715

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
            Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   SP S
Sbjct: 1716 YSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTS 1769

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
            P Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P S
Sbjct: 1770 PVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 1821

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 62/167 (37%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1692 SPSYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1736

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1737 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1790

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1791 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1833

 Score = 90.5 bits (223), Expect = 6e-17
 Identities = 67/165 (40%), Positives = 88/165 (53%), Gaps = 1/165 (0%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
            I ++    G A     +PG SPA   TP  SP SPG +  SP         P+ G   Y+
Sbjct: 1479 IPTNIPGLGAAGRDGFSPGYSPAWSPTPG-SPGSPGPS--SPYI-------PSPGE-LYS 1527

Query: 209  PASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVP 388
            P SPAY   SPG GY+P +P+ + +SP YSP    TSPS            SP SP Y P
Sbjct: 1528 PTSPAYEPRSPG-GYTPQSPSYSPTSPSYSP----TSPSY-----------SPTSPNYSP 1571

Query: 389  TSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            TSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1572 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1615

[104][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
            RepID=Q6FQS9_CANGA
          Length = 1715

 Score =  104 bits (260), Expect = 3e-21
 Identities = 69/170 (40%), Positives = 94/170 (55%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADA-AGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            SP  +  DA A     G  +PG SP    +P  SP SP Y+  SP +        +  + 
Sbjct: 1521 SPFGAYGDAPASPGFGGVSSPGFSPT---SPAYSPTSPSYSPTSPSY--------SPTSP 1569

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP 
Sbjct: 1570 SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPT 1623

Query: 371  SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1624 SPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1666

 Score =  101 bits (251), Expect = 4e-20
 Identities = 66/171 (38%), Positives = 93/171 (54%), Gaps = 4/171 (2%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            FSP++ +  +   +       G    G  +P     + G A  SP FGG    G +  + 
Sbjct: 1492 FSPLVDAGSSDAMSGGFTAYGGAEYGGATSPF---GAYGDAPASPGFGGVSSPGFSPTSP 1548

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
            AY+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P +   SP 
Sbjct: 1549 AYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT 1602

Query: 371  SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1603 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1652

 Score =  101 bits (251), Expect = 4e-20
 Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1547 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1598

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1599 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1652

Query: 374  PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPGS 1701

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1582 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1628

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1684

Query: 428  AANV-YSPSSPAYSPFSPNYA 487
              +  YSP+SP+YSP SP Y+
Sbjct: 1685 PTSPSYSPTSPSYSPGSPTYS 1705

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1610 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1656

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS            SP SP Y PTSP+         
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSY-----------SPTSPSYSPTSPS--------- 1696

Query: 428  AANVYSPSSPAYSP 469
                YSP SP YSP
Sbjct: 1697 ----YSPGSPTYSP 1706

[105][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
            Tax=Pichia guilliermondii RepID=RPB1_PICGU
          Length = 1579

 Score =  104 bits (260), Expect = 3e-21
 Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 9/171 (5%)
 Frame = +2

Query: 35   SSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
            +++ A G A+PG    +P  SP    +P  SP SP Y+  SP +        +  + +Y+
Sbjct: 1366 ATSPAYGGASPGYGVTSPTYSPT---SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 1421

Query: 209  PASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQ 370
            P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +   SP 
Sbjct: 1422 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1479

Query: 371  SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+      +  + +YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1480 SPSYSPTSPSYSPTSPSYSPTSPLYSPTSPSYSPTSPSY-SPTSPSYSPTS 1529

 Score =  100 bits (250), Expect = 5e-20
 Identities = 64/158 (40%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1410 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1456

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP Y+      +
Sbjct: 1457 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPLYSPTSPSYS 1512

Query: 428  AANV-YSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              +  YSP+SP+YSP SP+Y+  S      SPAY P S
Sbjct: 1513 PTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPAYSPTS 1550

 Score =  100 bits (249), Expect = 6e-20
 Identities = 63/155 (40%), Positives = 85/155 (54%), Gaps = 7/155 (4%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1424 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1470

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y+    
Sbjct: 1471 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPLYSPTSPSYSPTSPSYSPTSPSYSPTSP 1530

Query: 419  VVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  +  YSP+SPAYSP SP Y + +SP Y P S
Sbjct: 1531 SYSPTSPQYSPTSPAYSPTSPQY-SPNSPQYSPRS 1564

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 58/140 (41%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1452 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1498

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P  + +SP YSP    YSPTSPS      P +   SP SP Y PTSPAY+       
Sbjct: 1499 PTSPLYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPQYSPTSPAYS------P 1548

Query: 428  AANVYSPSSPAYSPFSPNYA 487
             +  YSP+SP YSP SP Y+
Sbjct: 1549 TSPQYSPNSPQYSPRSPLYS 1568

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 62/178 (34%), Positives = 82/178 (46%), Gaps = 13/178 (7%)
 Frame = +2

Query: 26   PIMSSADAAGRATPGRMTPGRS-----------PAGRFTP-RMSPASPGYAAMSPRFGGG 169
            P+ ++  A   A  G  TP R                F+P   +P S G  A++  +GG 
Sbjct: 1294 PVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVSDGAGALTA-YGGQ 1352

Query: 170  LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPA 349
             G        AY   SPAY   SPG G +             SP YSPTSPS      P 
Sbjct: 1353 PGSPSPTSPFAYGATSPAYGGASPGYGVT-------------SPTYSPTSPSY----SPT 1395

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1396 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1452

[106][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
            RepID=B3RM26_TRIAD
          Length = 1784

 Score =  104 bits (259), Expect = 4e-21
 Identities = 65/153 (42%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +PR SP SP Y+  SPR+        +  + +Y+P SP Y  TSP   YS
Sbjct: 1596 SPSYSPT---SPRYSPTSPSYSPTSPRY--------SPTSPSYSPTSPRYSPTSPS--YS 1642

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 1643 PTSPSYSPTSPRYSPTSPSYSPTSPSYS----PTSPKYSPTSPRYSPTSPSYS------P 1692

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
             +  YSP+SP+YSP SP+Y + +SP+Y P S R
Sbjct: 1693 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPR 1724

 Score =  101 bits (252), Expect = 3e-20
 Identities = 64/154 (41%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +PR SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1645 SPSYSPT---SPRYSPTSPSYSPTSPSY--------SPTSPKYSPTSPRYSPTSPS--YS 1691

Query: 257  PSTPALAVSSPGYSP---GYSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSPS      R  P +   SP SP Y PTSP+Y+    
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYS---- 1747

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1748 --PTSPRYSPTSPSYSPTSPSY-SPTSPSYSPTS 1778

 Score =  100 bits (248), Expect = 8e-20
 Identities = 70/192 (36%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFT--------------------PRMSPASP 133
            AS+SP  S   AA   +PG  +P        T                     + SP SP
Sbjct: 1538 ASYSPNWSPGPAASPGSPGPSSPYMQSPTDITFYVAFQSIILTVESKLLTDFSKYSPTSP 1597

Query: 134  GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---G 304
             Y+  SPR+        +  + +Y+P SP Y  TSP   YSP++P  + +SP YSP    
Sbjct: 1598 SYSPTSPRY--------SPTSPSYSPTSPRYSPTSPS--YSPTSPRYSPTSPSYSPTSPS 1647

Query: 305  YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNY 484
            YSPTSP    R  P +   SP SP Y PTSP Y+        +  YSP+SP+YSP SP+Y
Sbjct: 1648 YSPTSP----RYSPTSPSYSPTSPSYSPTSPKYS------PTSPRYSPTSPSYSPTSPSY 1697

Query: 485  AAASSPAYQPPS 520
             + +SP+Y P S
Sbjct: 1698 -SPTSPSYSPTS 1708

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 62/161 (38%), Positives = 85/161 (52%), Gaps = 6/161 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T  R +P        +P  SP SP Y+  SPR+        +  + +
Sbjct: 1638 SPSYSPTSPSYSPTSPRYSPTSPSYSPTSPSYSPTSPKYSPTSPRY--------SPTSPS 1689

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPS---VGARGGPAAGYAS 364
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      R  P +   S
Sbjct: 1690 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYS 1747

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA 487
            P SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y+
Sbjct: 1748 PTSPRYSPTSPSYS------PTSPSYSPTSPSYSPTSPDYS 1782

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 78/217 (35%), Positives = 98/217 (45%), Gaps = 46/217 (21%)
 Frame = +2

Query: 14   ASFSPIMSSADAA-------GRATPGR---MTPGR---SPAGRFTPRMSPASPGYAAMSP 154
            A  SP M+  D++       G  TPG    MTPG    SP+G   P  SPAS      SP
Sbjct: 1488 AGMSPQMTPWDSSLTTPSYEGPYTPGMGGGMTPGAAGFSPSGASEPSFSPAS-----YSP 1542

Query: 155  RFGGGLGGGPAGGAGAYAPASP------------------------------AYMATSPG 244
             +  G    PA   G+  P+SP                               Y  TSP 
Sbjct: 1543 NWSPG----PAASPGSPGPSSPYMQSPTDITFYVAFQSIILTVESKLLTDFSKYSPTSPS 1598

Query: 245  MGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
              YSP++P  + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+   
Sbjct: 1599 --YSPTSPRYSPTSPSYSPTSPRYSPTSPSYS----PTSPRYSPTSPSYSPTSPSYS--- 1649

Query: 416  TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
                 +  YSP+SP+YSP SP+Y + +SP Y P S R
Sbjct: 1650 ---PTSPRYSPTSPSYSPTSPSY-SPTSPKYSPTSPR 1682

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 32/83 (38%), Positives = 46/83 (55%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +PR SP SP Y+  SPR+        +  + +Y+P SP Y  TSP   YS
Sbjct: 1715 SPSYSPT---SPRYSPTSPSYSPTSPRY--------SPTSPSYSPTSPRYSPTSPS--YS 1761

Query: 257  PSTPALAVSSPGYSPGYSPTSPS 325
            P++P+ + +SP YSP     SP+
Sbjct: 1762 PTSPSYSPTSPSYSPTSPDYSPN 1784

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 33/93 (35%), Positives = 44/93 (47%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    +   T  R +P        +PR SP SP Y+  SPR               
Sbjct: 1708 SPSYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSPR--------------- 1752

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP 301
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP
Sbjct: 1753 YSPTSPSYSPTSP--SYSPTSPSYSPTSPDYSP 1783

[107][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
            RepID=Q5KGG3_CRYNE
          Length = 1786

 Score =  104 bits (259), Expect = 4e-21
 Identities = 75/195 (38%), Positives = 95/195 (48%), Gaps = 31/195 (15%)
 Frame = +2

Query: 17   SFSPIMSSADAA--------GRATPGRMTPGRSPAGR-----------FTPRMSPASPGY 139
            ++SP    A AA        GR   G  +P  SP               +P  SP+SP Y
Sbjct: 1567 AYSPTSPFAGAAAGAASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTY 1626

Query: 140  AAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP- 301
            +  SP +GG    G    A  Y+P SPAY  TSP  G     YSP++P  + +SP +SP 
Sbjct: 1627 SPASPAYGGA---GAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPT 1683

Query: 302  --GYSPTSPS----VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAY 463
               YSPTSP+       R  P +   SP SP Y P SPAY+        +  YSP+SPAY
Sbjct: 1684 SPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYS------PTSPQYSPTSPAY 1737

Query: 464  SPFSPNYAAASSPAY 508
            SP SP Y + +SPAY
Sbjct: 1738 SPTSPAY-SPTSPAY 1751

 Score =  102 bits (254), Expect = 2e-20
 Identities = 78/197 (39%), Positives = 96/197 (48%), Gaps = 28/197 (14%)
 Frame = +2

Query: 14   ASFSPIMSSADAAG----------RATPGRMTPG----RSPAGRF-TPRMSPASPGYAAM 148
            A+FSPI SSA+  G              G M+P      SPAG   T   +  SP Y+  
Sbjct: 1512 AAFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAGYSPSSPAGYSPTSPFAVTSPAYSPT 1571

Query: 149  SPRFGGGLGGG-PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPT 316
            SP  G   G   P  G G Y   SPAY  TSP   YSP++P  + +SP +SP    YSP 
Sbjct: 1572 SPFAGAAAGAASPWVGRGGYGATSPAYSPTSPQ--YSPTSPQFSPTSPSFSPSSPTYSPA 1629

Query: 317  SPSVGARG-GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYA- 487
            SP+ G  G G  A   SP SP Y PTSP         +  +  YSP+SPA+SP SP+Y+ 
Sbjct: 1630 SPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSP 1689

Query: 488  ------AASSPAYQPPS 520
                   A+SP Y P S
Sbjct: 1690 TSPAPFQATSPRYSPTS 1706

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 51/151 (33%), Positives = 64/151 (42%), Gaps = 20/151 (13%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGR----SPAGRFT--------PRMSPASPGYAAMSPRFGG 166
            SP    A A  RA+P   T       SP G  T        PR SP SP ++  SP +  
Sbjct: 1630 SPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSP 1689

Query: 167  GLGGGPAGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY---SPGYSPTSP 322
                     +  Y+P SP +  TSP        YSP++P  + +SP Y   SP YSPTSP
Sbjct: 1690 TSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSP 1749

Query: 323  SVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
            + G    P  G A  Q+          ARPG
Sbjct: 1750 AYGG-AAPNGGTAQQQN--------GQARPG 1771

[108][TOP]
>UniRef100_C8Z6G2 Rpo21p n=1 Tax=Saccharomyces cerevisiae EC1118 RepID=C8Z6G2_YEAST
          Length = 1733

 Score =  104 bits (259), Expect = 4e-21
 Identities = 66/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1604

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1605 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1658

Query: 374  PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y+      +  +  YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1707

 Score =  100 bits (249), Expect = 6e-20
 Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1581 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1627

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y+   P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
                 + N YSP+SP+YSP SP Y +  SPAY P
Sbjct: 1688 SYSPTSPN-YSPTSPSYSPTSPGY-SPGSPAYSP 1719

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
 Frame = +2

Query: 149  SPRFGGGLGGGPAGGAGAYAPASPAYMATSP--GMGYSPSTPALAVSSPGY---SPGYSP 313
            SP    G     AGG  AY  A     ATSP    G +P++P   VSSPG+   SP YSP
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGE-ATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551

Query: 314  TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAA 490
            TSP+      P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y +
Sbjct: 1552 TSPAY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1606

Query: 491  ASSPAYQPPS 520
             +SP+Y P S
Sbjct: 1607 PTSPSYSPTS 1616

[109][TOP]
>UniRef100_C7GKZ2 Rpo21p n=2 Tax=Saccharomyces cerevisiae RepID=C7GKZ2_YEAS2
          Length = 1733

 Score =  104 bits (259), Expect = 4e-21
 Identities = 66/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1604

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1605 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1658

Query: 374  PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y+      +  +  YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1707

 Score =  100 bits (249), Expect = 6e-20
 Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1581 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1627

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y+   P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
                 + N YSP+SP+YSP SP Y +  SPAY P
Sbjct: 1688 SYSPTSPN-YSPTSPSYSPTSPGY-SPGSPAYSP 1719

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
 Frame = +2

Query: 149  SPRFGGGLGGGPAGGAGAYAPASPAYMATSP--GMGYSPSTPALAVSSPGY---SPGYSP 313
            SP    G     AGG  AY  A     ATSP    G +P++P   VSSPG+   SP YSP
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGE-ATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551

Query: 314  TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAA 490
            TSP+      P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y +
Sbjct: 1552 TSPAY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1606

Query: 491  ASSPAYQPPS 520
             +SP+Y P S
Sbjct: 1607 PTSPSYSPTS 1616

[110][TOP]
>UniRef100_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
            RepID=C4VAM1_NOSCE
          Length = 1612

 Score =  104 bits (259), Expect = 4e-21
 Identities = 67/172 (38%), Positives = 96/172 (55%), Gaps = 3/172 (1%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            + +SP +S   + G  + G  +P  SP    +P  SP SP Y+  SP +        +  
Sbjct: 1435 SKYSPKLSLF-SVGSPSYGSASPSYSPT---SPSYSPTSPSYSPTSPSY--------SPT 1482

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
            + +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   S
Sbjct: 1483 SPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYS 1536

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1537 PTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1581

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 3/174 (1%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            ++ ++SP   + ++         + G    G  +P  SP SP Y+  SP           
Sbjct: 1422 SSGNWSPAYLAEESKYSPKLSLFSVGSPSYGSASPSYSPTSPSYSPTSP----------- 1470

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
                +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +  
Sbjct: 1471 ----SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPS 1520

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1521 YSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1567

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1490 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1536

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS            SP SP Y PTSP+Y+       
Sbjct: 1537 PTSPSYSPTSPSYSPTSPSYSPTSPSY-----------SPTSPSYSPTSPSYS------P 1579

Query: 428  AANVYSPSSPAYSP 469
             +  YSP+SP+YSP
Sbjct: 1580 TSLSYSPTSPSYSP 1593

 Score = 73.9 bits (180), Expect = 6e-12
 Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1497 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1543

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
            P++P+ + +SP YSP    YSPTSPS      P +   SP S  Y PTSP+Y+  G
Sbjct: 1544 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSLSYSPTSPSYSPTG 1595

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 6/96 (6%)
 Frame = +2

Query: 251  YSPSTPALAVSSPGYSPGY----SPTSP--SVGARGGPAAGYASPQSPGYVPTSPAYARP 412
            YSP + + ++SS  +SP Y    S  SP  S+ + G P+ G ASP    Y PTSP+Y+  
Sbjct: 1412 YSPVSESQSISSGNWSPAYLAEESKYSPKLSLFSVGSPSYGSASPS---YSPTSPSYS-- 1466

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1467 ----PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1497

[111][TOP]
>UniRef100_B3LH31 DNA-directed RNA polymerase n=1 Tax=Saccharomyces cerevisiae RM11-1a
            RepID=B3LH31_YEAS1
          Length = 1733

 Score =  104 bits (259), Expect = 4e-21
 Identities = 66/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1604

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1605 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1658

Query: 374  PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y+      +  +  YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1707

 Score =  100 bits (249), Expect = 6e-20
 Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1581 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1627

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y+   P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
                 + N YSP+SP+YSP SP Y +  SPAY P
Sbjct: 1688 SYSPTSPN-YSPTSPSYSPTSPGY-SPGSPAYSP 1719

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 56/130 (43%), Positives = 71/130 (54%), Gaps = 6/130 (4%)
 Frame = +2

Query: 149  SPRFGGGLGGGPAGGAGAYAPASPAYMATSP--GMGYSPSTPALAVSSPGY---SPGYSP 313
            SP    G     AGG  AY  A     ATSP    G  P++P   VSSPG+   SP YSP
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGE-ATSPFGAYGEPPTSPGFGVSSPGFSPTSPTYSP 1551

Query: 314  TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAA 490
            TSP+      P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y +
Sbjct: 1552 TSPAY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1606

Query: 491  ASSPAYQPPS 520
             +SP+Y P S
Sbjct: 1607 PTSPSYSPTS 1616

[112][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8Q5I6_MALGO
          Length = 1607

 Score =  104 bits (259), Expect = 4e-21
 Identities = 70/174 (40%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG---G 193
            SP++ +++A    T  RM+P        +P  SP SP Y+  SP++      GP G   G
Sbjct: 1415 SPVIDASNARSTYT-SRMSPASPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLG 1473

Query: 194  AGA--YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
            A    Y+P SP Y  TSP   YSP++P  + +SP YSP    YSPTSP       P +  
Sbjct: 1474 ASGPKYSPTSPQYSPTSPQ--YSPTSPQYSPTSPQYSPTSPQYSPTSPQYS----PTSPQ 1527

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP Y+        +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1528 YSPTSPQYSPTSPQYS------PTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1574

 Score = 97.4 bits (241), Expect = 5e-19
 Identities = 73/203 (35%), Positives = 93/203 (45%), Gaps = 30/203 (14%)
 Frame = +2

Query: 2    INATASFSPIMS---SADAAGRATPGRMTPGRSPAGRFTPR--MSPASPGYAAMSPRFGG 166
            +   ASFSP++         G       +P R+P G  +P    +P SPGY   SP +  
Sbjct: 1307 VQQQASFSPLVQVGGDEGGYGEYLSAGQSPMRTPLGAQSPGYGFAPTSPGYVPTSPAYNA 1366

Query: 167  ---GLGG-----GPAGGAG-AYAPASPAYMATSPGMGYSPSTPALAVSSPGY-------- 295
                LG      G AG    AY+P SP   A +    YSP++P+ + SSP          
Sbjct: 1367 TSPALGAMSPWVGAAGATSPAYSPTSPRIFAGATSPSYSPTSPSYSPSSPVIDASNARST 1426

Query: 296  --------SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS 451
                    SP YSPTSP       P +   SP SP Y PTSPA  R   + A+   YSP+
Sbjct: 1427 YTSRMSPASPNYSPTSPVYS----PTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPT 1482

Query: 452  SPAYSPFSPNYAAASSPAYQPPS 520
            SP YSP SP Y + +SP Y P S
Sbjct: 1483 SPQYSPTSPQY-SPTSPQYSPTS 1504

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 71/175 (40%), Positives = 88/175 (50%), Gaps = 3/175 (1%)
 Frame = +2

Query: 5    NATASFSPIMSS-ADAAGRATPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG 178
            NAT+     MS    AAG  +P    T  R  AG  +P  SP SP Y+  SP        
Sbjct: 1365 NATSPALGAMSPWVGAAGATSPAYSPTSPRIFAGATSPSYSPTSPSYSPSSPVIDAS--N 1422

Query: 179  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY 358
              +      +PASP Y  TSP   YSP++PA + +SP YSP  SP  P  G R G +   
Sbjct: 1423 ARSTYTSRMSPASPNYSPTSPV--YSPTSPAYSPTSPQYSPT-SPAGPR-GRRLGASGPK 1478

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP SP Y PTSP Y+      +  +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1479 YSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1532

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 68/189 (35%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            S +   +D  G  TPG MTP  S +              A+ SP       GG  GG G 
Sbjct: 1274 SKLGMDSDDLGARTPGGMTPYDSGSPNIDDDFRVQQ--QASFSPLV---QVGGDEGGYGE 1328

Query: 203  YAPASPAYMAT-----SPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
            Y  A  + M T     SPG G++P++P    +SP Y   SP     SP VGA G  +  Y
Sbjct: 1329 YLSAGQSPMRTPLGAQSPGYGFAPTSPGYVPTSPAYNATSPALGAMSPWVGAAGATSPAY 1388

Query: 359  --------ASPQSPGYVPTSPAYARPGTVVAAANV-------YSPSSPAYSPFSPNYAAA 493
                    A   SP Y PTSP+Y+    V+ A+N         SP+SP YSP SP Y + 
Sbjct: 1389 SPTSPRIFAGATSPSYSPTSPSYSPSSPVIDASNARSTYTSRMSPASPNYSPTSPVY-SP 1447

Query: 494  SSPAYQPPS 520
            +SPAY P S
Sbjct: 1448 TSPAYSPTS 1456

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 38/116 (32%), Positives = 54/116 (46%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S        T  + +P        +P+ SP SP Y+  SP++        +  +  
Sbjct: 1490 SPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY--------SPTSPQ 1541

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
            Y+P SP Y  TSP   YSP++P  + +SP YSP     SPS       A+G ASP+
Sbjct: 1542 YSPTSPQYSPTSPQ--YSPTSPQYSPTSPQYSPTSPQYSPSGNVGASAASGAASPR 1595

[113][TOP]
>UniRef100_P04050 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Saccharomyces
            cerevisiae RepID=RPB1_YEAST
          Length = 1733

 Score =  104 bits (259), Expect = 4e-21
 Identities = 66/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1604

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1605 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1658

Query: 374  PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y+      +  +  YSP+SP+YSP SPNY + +SP+Y P S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY-SPTSPSYSPTS 1707

 Score =  100 bits (249), Expect = 6e-20
 Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1581 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1627

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA--RP 412
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y+   P
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
                 + N YSP+SP+YSP SP Y +  SPAY P
Sbjct: 1688 SYSPTSPN-YSPTSPSYSPTSPGY-SPGSPAYSP 1719

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
 Frame = +2

Query: 149  SPRFGGGLGGGPAGGAGAYAPASPAYMATSP--GMGYSPSTPALAVSSPGY---SPGYSP 313
            SP    G     AGG  AY  A     ATSP    G +P++P   VSSPG+   SP YSP
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGE-ATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551

Query: 314  TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAA 490
            TSP+      P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y +
Sbjct: 1552 TSPAY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1606

Query: 491  ASSPAYQPPS 520
             +SP+Y P S
Sbjct: 1607 PTSPSYSPTS 1616

[114][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score =  103 bits (258), Expect = 6e-21
 Identities = 65/182 (35%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG---GPAGG 193
            SPI S    +   T    +P        +   SP SP Y   SP +          P   
Sbjct: 1622 SPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSP 1681

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------GYSPTSPSVGARGG 343
            + +Y+P SP+Y  TSP   YSP++P+ + +SP YSP           YSPTSPS      
Sbjct: 1682 SYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSS 1741

Query: 344  ---PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
               P +   SP SPGY PTSP+Y+        ++V    S AYSP SPNY +++SP Y P
Sbjct: 1742 AYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSP 1801

Query: 515  PS 520
             S
Sbjct: 1802 TS 1803

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 78/245 (31%), Positives = 103/245 (42%), Gaps = 74/245 (30%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTP----GRSPA--------GRFTPRM----------- 118
            A A FSP +     +  ++PG  TP    G SP+        G FT              
Sbjct: 1525 ADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSP 1584

Query: 119  --------------------SPASPGYAAMSPRFG--------GGLGGGPAG-------- 190
                                SP SP Y+A SP +           L   P          
Sbjct: 1585 ASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSP 1644

Query: 191  ----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY-----SPGYSPTSPS-----V 328
                 + AY+P SP+Y  TSP   YSP++P+ + +SP Y     SP YSPTSPS      
Sbjct: 1645 VYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPT 1704

Query: 329  GARGGPAAGYASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                 P +   SP SP Y PTSP+Y+    +    ++ YSP+SPAYSP SP Y + +SP+
Sbjct: 1705 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGY-SPTSPS 1763

Query: 506  YQPPS 520
            Y P S
Sbjct: 1764 YSPSS 1768

 Score = 77.8 bits (190), Expect = 4e-13
 Identities = 50/131 (38%), Positives = 68/131 (51%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + AY+P SPAY  TSPG  YS
Sbjct: 1712 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSSAYSPTSPAYSPTSPG--YS 1758

Query: 257  PSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN 436
            P++P+ + SSP Y+P     +PS  A    +  Y S  SP Y PTSP+Y++P        
Sbjct: 1759 PTSPSYSPSSPSYNPSSVKYTPS-HAYSPSSPNYYSSTSPTYSPTSPSYSQP-------- 1809

Query: 437  VYSPSSPAYSP 469
                 SP+YSP
Sbjct: 1810 -----SPSYSP 1815

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 58/176 (32%), Positives = 79/176 (44%), Gaps = 6/176 (3%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T++ SPI  +    G  +P  +    SP  R +P  + A       SP + GG+   P  
Sbjct: 1492 TSACSPISGTPYHQGMMSPSYLL---SPDIRASPTAADAQ-----FSP-YVGGMAFSPVS 1542

Query: 191  GAGAYAPAS-----PAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAG 355
              G Y P+S     P+    +PG G   S+      SP YSP    + P       P + 
Sbjct: 1543 SPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSL 1602

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP SP Y  TSP Y+    + +  ++ YSP+SP YSP SP Y   SS AY P S
Sbjct: 1603 PHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSS-AYSPTS 1657

[115][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q0DKN9_ORYSJ
          Length = 1834

 Score =  103 bits (258), Expect = 6e-21
 Identities = 65/182 (35%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG---GPAGG 193
            SPI S    +   T    +P        +   SP SP Y   SP +          P   
Sbjct: 1622 SPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSP 1681

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------GYSPTSPSVGARGG 343
            + +Y+P SP+Y  TSP   YSP++P+ + +SP YSP           YSPTSPS      
Sbjct: 1682 SYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSS 1741

Query: 344  ---PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
               P +   SP SPGY PTSP+Y+        ++V    S AYSP SPNY +++SP Y P
Sbjct: 1742 AYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSP 1801

Query: 515  PS 520
             S
Sbjct: 1802 TS 1803

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 78/245 (31%), Positives = 103/245 (42%), Gaps = 74/245 (30%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTP----GRSPA--------GRFTPRM----------- 118
            A A FSP +     +  ++PG  TP    G SP+        G FT              
Sbjct: 1525 ADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSP 1584

Query: 119  --------------------SPASPGYAAMSPRFG--------GGLGGGPAG-------- 190
                                SP SP Y+A SP +           L   P          
Sbjct: 1585 ASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSP 1644

Query: 191  ----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY-----SPGYSPTSPS-----V 328
                 + AY+P SP+Y  TSP   YSP++P+ + +SP Y     SP YSPTSPS      
Sbjct: 1645 VYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPT 1704

Query: 329  GARGGPAAGYASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                 P +   SP SP Y PTSP+Y+    +    ++ YSP+SPAYSP SP Y + +SP+
Sbjct: 1705 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGY-SPTSPS 1763

Query: 506  YQPPS 520
            Y P S
Sbjct: 1764 YSPSS 1768

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 54/150 (36%), Positives = 74/150 (49%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + AY+P SPAY  TSPG  YS
Sbjct: 1712 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSSAYSPTSPAYSPTSPG--YS 1758

Query: 257  PSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN 436
            P++P+ + SSP Y+P     +PS  A    +  Y S  SP Y PTSP+Y++P        
Sbjct: 1759 PTSPSYSPSSPSYNPSSVKYTPS-HAYSPSSPNYYSSTSPTYSPTSPSYSQP-------- 1809

Query: 437  VYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
                 SP+YSP S     A   A +   +R
Sbjct: 1810 -----SPSYSPTSRVEEEAHEEAEEEEPKR 1834

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 58/176 (32%), Positives = 79/176 (44%), Gaps = 6/176 (3%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T++ SPI  +    G  +P  +    SP  R +P  + A       SP + GG+   P  
Sbjct: 1492 TSACSPISGTPYHQGMMSPSYLL---SPDIRASPTAADAQ-----FSP-YVGGMAFSPVS 1542

Query: 191  GAGAYAPAS-----PAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAG 355
              G Y P+S     P+    +PG G   S+      SP YSP    + P       P + 
Sbjct: 1543 SPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSL 1602

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP SP Y  TSP Y+    + +  ++ YSP+SP YSP SP Y   SS AY P S
Sbjct: 1603 PHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSS-AYSPTS 1657

[116][TOP]
>UniRef100_C5LSN8 P35 antigen, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC
           50983 RepID=C5LSN8_9ALVE
          Length = 170

 Score =  103 bits (258), Expect = 6e-21
 Identities = 66/150 (44%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + AY+P SPAY  TSP   YS
Sbjct: 19  SPAYSPT---SPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSPA--YS 65

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
           P++PA + +SP YSP    YSPTSP+      P +   SP SP Y PTSPAY+       
Sbjct: 66  PTSPAYSPTSPAYSPTSPAYSPTSPAYS----PTSPAYSPTSPSYSPTSPAYS------P 115

Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
            +  YSP+SPAYSP SP Y + +SPAY  P
Sbjct: 116 TSPAYSPTSPAYSPTSPAY-SPTSPAYYHP 144

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 56/114 (49%), Positives = 70/114 (61%), Gaps = 7/114 (6%)
 Frame = +2

Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARG---GPAAGYA 361
           AY+P SPAY  TSP   YSP++PA + +SP Y   SP YSPTSP+         P +   
Sbjct: 7   AYSPTSPAYSPTSP--AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 64

Query: 362 SPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           SP SP Y PTSPAY+      +  +  YSP+SPAYSP SP+Y + +SPAY P S
Sbjct: 65  SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSY-SPTSPAYSPTS 117

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 55/110 (50%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
 Frame = +2

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
           Y+P SPAY  TSP   YSP++PA + +SP Y   SP YSPTSP+      P +   SP S
Sbjct: 1   YSPTSPAYSPTSP--AYSPTSPAYSPTSPAYSPTSPAYSPTSPAY----SPTSPAYSPTS 54

Query: 374 PGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           P Y PTSPAY+      +  +  YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 55  PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPAYSPTS 103

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 66/163 (40%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 26  SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPA 77

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
           Y+P SPAY  TSP   YSP++PA + +SP YSP    YSPTSP+      P +   SP S
Sbjct: 78  YSPTSPAYSPTSPA--YSPTSPAYSPTSPSYSPTSPAYSPTSPAYS----PTSPAYSPTS 131

Query: 374 PGYVPTSPAYARP-------GTVVAAANVYSPSSPAYSPFSPN 481
           P Y PTSPAY  P       G VV     YSP+SPAYS  SP+
Sbjct: 132 PAYSPTSPAYYHPLVTSSDEGPVVR----YSPTSPAYSNTSPS 170

[117][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score =  103 bits (258), Expect = 6e-21
 Identities = 76/181 (41%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
 Frame = +2

Query: 20   FSPIMSS--ADAAGRAT-PGRMTPGRSPAGRFTPRMSPASPGYAAMSPR-FGGGLGGGPA 187
            FSP+       + G AT P     G SP   +T  M   SP Y+  SPR FGG      +
Sbjct: 1555 FSPVSPGYVPTSPGYATSPAGALGGMSP---WTGNMGATSPAYSPTSPRIFGGATSPSYS 1611

Query: 188  GGAGAYAPASPAYMATSP-GMGYSPSTPAL---AVSSPGYSPG---YSPTSPSVGARGGP 346
              + +Y+PASP Y  +SP G GYSPS+PA    A +SP YSP    +SPTSP+       
Sbjct: 1612 PTSPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKFSPTSPNY------ 1665

Query: 347  AAGYASPQSPGYVPTSPAYARPGTVVA---AANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
                 SP SP Y PTSP Y+     +A       +SP+SPAYSP SP Y+ A SPA+ P 
Sbjct: 1666 -----SPASPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSPQYSPA-SPAFSPT 1719

Query: 518  S 520
            S
Sbjct: 1720 S 1720

 Score =  103 bits (257), Expect = 7e-21
 Identities = 70/156 (44%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
 Frame = +2

Query: 68   GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA-----YAPASPAYMA 232
            G  +P  SP    +P  SPASP Y+  SP   G     PAG  GA     Y+PASP +  
Sbjct: 1604 GATSPSYSPT---SPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKFSP 1660

Query: 233  TSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
            TSP   YSP++PA   +SP YSP    TSP++  RGG   G+ SP SP Y PTSP Y   
Sbjct: 1661 TSPN--YSPASPAYTPTSPVYSP----TSPAMAGRGG-GKGF-SPTSPAYSPTSPQY--- 1709

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                      SP+SPA+SP SP Y+ A SP Y P S
Sbjct: 1710 ----------SPASPAFSPTSPQYSPA-SPQYSPTS 1734

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 74/182 (40%), Positives = 94/182 (51%), Gaps = 9/182 (4%)
 Frame = +2

Query: 2    INATASFSPIMSSADAAGRATPGRMT---PGRSPAGRFTPR---MSPASPGYAAMSPRFG 163
            ++  A FSP+  +    G      ++   P R+P G  +P     SP SPGY   SP   
Sbjct: 1511 VHEQAMFSPLAQTGGDEGGYNDYLLSGTSPMRTPLGAQSPAGYGFSPVSPGYVPTSP--- 1567

Query: 164  GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGG 343
             G    PAG  G  +P +    ATSP   YSP++P +   +   SP YSPTSPS      
Sbjct: 1568 -GYATSPAGALGGMSPWTGNMGATSPA--YSPTSPRIFGGAT--SPSYSPTSPSYS---- 1618

Query: 344  PAAGYASPQSP---GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            PA+   SP SP   GY P+SPA  R G   A +  YSP+SP +SP SPNY+ A SPAY P
Sbjct: 1619 PASPNYSPSSPAGAGYSPSSPA-GRYGA--ATSPQYSPASPKFSPTSPNYSPA-SPAYTP 1674

Query: 515  PS 520
             S
Sbjct: 1675 TS 1676

 Score = 81.6 bits (200), Expect = 3e-14
 Identities = 59/147 (40%), Positives = 77/147 (52%), Gaps = 14/147 (9%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGP 184
            S+SP   +   +  A  G  +P  SPAGR+    +P+ SPASP ++  SP +       P
Sbjct: 1616 SYSPASPNYSPSSPAGAG-YSPS-SPAGRYGAATSPQYSPASPKFSPTSPNYS------P 1667

Query: 185  AGGAGAYAPASPAYMATSPGM-------GYSPSTPALAVSSPGY---SPGYSPTSPSVGA 334
            A  + AY P SP Y  TSP M       G+SP++PA + +SP Y   SP +SPTSP    
Sbjct: 1668 A--SPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSPQYSPASPAFSPTSPQY-- 1723

Query: 335  RGGPAAGYASPQSPGYVPTSPAYARPG 415
               PA+   SP SP Y PTSPA    G
Sbjct: 1724 --SPASPQYSPTSPQYSPTSPAMGMGG 1748

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 72/174 (41%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
 Frame = +2

Query: 38   SADAAGRATPGRMTP--GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
            S DAAG  TPG MTP    SPA     R+       A  SP       GG  GG   Y  
Sbjct: 1483 SLDAAGGKTPGAMTPYDSSSPASDDAFRVHEQ----AMFSPL---AQTGGDEGGYNDYLL 1535

Query: 212  ASPAYMAT-----SP-GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGG--PAAGYASP 367
            +  + M T     SP G G+SP +P    +SPGY+     TSP+ GA GG  P  G    
Sbjct: 1536 SGTSPMRTPLGAQSPAGYGFSPVSPGYVPTSPGYA-----TSPA-GALGGMSPWTGNMGA 1589

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA---YQPPS 520
             SP Y PTSP      T    +  YSP+SP+YSP SPNY + SSPA   Y P S
Sbjct: 1590 TSPAYSPTSPRIFGGAT----SPSYSPTSPSYSPASPNY-SPSSPAGAGYSPSS 1638

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 54/135 (40%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG--GGLGGG 181
            A A +SP  S A   G AT  + +P        +P  SPASP Y   SP +        G
Sbjct: 1630 AGAGYSP-SSPAGRYGAATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAG 1688

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG----------YSPTSPSVG 331
              GG G ++P SPAY  TSP   YSP++PA + +SP YSP           YSPTSP++G
Sbjct: 1689 RGGGKG-FSPTSPAYSPTSPQ--YSPASPAFSPTSPQYSPASPQYSPTSPQYSPTSPAMG 1745

Query: 332  ----ARGGPAAGYAS 364
                + GGP A  AS
Sbjct: 1746 MGGASAGGPGAAAAS 1760

[118][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CNZ4_ASPCL
          Length = 1765

 Score =  103 bits (258), Expect = 6e-21
 Identities = 71/183 (38%), Positives = 96/183 (52%), Gaps = 14/183 (7%)
 Frame = +2

Query: 11   TASFSPIMSSADAAG-RATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            T S+SPI     +     +PG MT PG SP    +P  +P SP Y+  SP +G      P
Sbjct: 1586 TTSYSPIAPGITSPRFNTSPGFMTSPGFSPV---SPSFAPTSPAYSPTSPAYGQASPTSP 1642

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG----- 340
            +     Y+P SP +  TSP   YSP++P+ + +SP +SP    YSPTSP++G  G     
Sbjct: 1643 S-----YSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSP 1695

Query: 341  -GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYS---PSSPAYSPFSPNYAAASSPAY 508
              P +   +P SPG+ PTSP    P +   A +  S   P+SP YSP SP    A SP+Y
Sbjct: 1696 TSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSP----AFSPSY 1751

Query: 509  QPP 517
             PP
Sbjct: 1752 VPP 1754

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 66/176 (37%), Positives = 87/176 (49%), Gaps = 9/176 (5%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            FSP  +S       +P    P  SP    T   SP +PG    SPRF    G   + G  
Sbjct: 1558 FSPAATSPAGYSPTSPFSANP-TSPGYSPTTSYSPIAPGIT--SPRFNTSPGFMTSPG-- 1612

Query: 200  AYAPASPAYMATSPGMGYSPSTPAL---AVSSPGYSP---GYSPTSPSVGARG---GPAA 352
             ++P SP++  TSP   YSP++PA    + +SP YSP   G+SPTSP+         PA+
Sbjct: 1613 -FSPVSPSFAPTSPA--YSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPAS 1669

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP SP Y PTSPA    G  ++     SP+SP Y+P SP ++  S   Y P S
Sbjct: 1670 PAFSPTSPSYSPTSPAIGGAGRHLSPT---SPTSPKYTPTSPGWSPTSPQTYSPTS 1722

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 65/187 (34%), Positives = 85/187 (45%), Gaps = 18/187 (9%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            ++FSPI      AG  TPG  T  +   G                   FGGG        
Sbjct: 1529 SAFSPI----GQAGAETPGGFTEYQPTGG-------------------FGGGFSPAATSP 1565

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAV----------SSPGY--SPGYSPTSPSVGAR 337
            AG Y+P SP + A     GYSP+T    +          +SPG+  SPG+SP SPS    
Sbjct: 1566 AG-YSPTSP-FSANPTSPGYSPTTSYSPIAPGITSPRFNTSPGFMTSPGFSPVSPSFAPT 1623

Query: 338  G------GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
                    PA G ASP SP Y PTSP ++        +  YSP+SP++SP SP + + +S
Sbjct: 1624 SPAYSPTSPAYGQASPTSPSYSPTSPGFS------PTSPNYSPTSPSFSPASPAF-SPTS 1676

Query: 500  PAYQPPS 520
            P+Y P S
Sbjct: 1677 PSYSPTS 1683

[119][TOP]
>UniRef100_C8VQG7 DNA-directed RNA polymerase (EC 2.7.7.6)
            [Source:UniProtKB/TrEMBL;Acc:Q873Q6] n=2 Tax=Emericella
            nidulans RepID=C8VQG7_EMENI
          Length = 1745

 Score =  103 bits (257), Expect = 7e-21
 Identities = 68/174 (39%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            FSP  +S      ++P    P  SP    T   SP SPG    SPRF    G  PA  + 
Sbjct: 1554 FSPAATSPAGYSPSSPFSANP-TSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPA--SP 1610

Query: 200  AYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASP 367
            ++AP SPAY  TSP  G  SP++P+ + +SPG+SP    YSPTSPS            SP
Sbjct: 1611 SFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSF-----------SP 1659

Query: 368  QSPGYVPTSPAYARPGTVVAAA---NVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP + PTSP+Y+     +  A   +  SP+SP Y+P SP ++  S   Y P S
Sbjct: 1660 TSPAFSPTSPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTS 1713

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 66/188 (35%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            T+S+SP   ++   G  +P  MT PG SPA   +P  +P SP Y+  SP +G      P+
Sbjct: 1582 TSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQASPTSPS 1635

Query: 188  GGAGA---------YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARG 340
                +         Y+P SP++  TSP   +SP+           SP YSPTSP++G  G
Sbjct: 1636 YSPTSPGFSPTSPNYSPTSPSFSPTSP--AFSPT-----------SPSYSPTSPAIG--G 1680

Query: 341  GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP-AYSPFSPNYAAA-------S 496
                   SP SP Y PTSP              +SP+SP  YSP SPN+A +       +
Sbjct: 1681 ARHLSPTSPTSPKYTPTSPG-------------WSPTSPQTYSPTSPNFAGSPTSPGGPT 1727

Query: 497  SPAYQPPS 520
            SP Y P S
Sbjct: 1728 SPGYSPTS 1735

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 58/128 (45%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
 Frame = +2

Query: 161  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA-VSSPGYSP--GYSPTSPSVG 331
            GG     P+GG G ++PA     ATSP  GYSPS+P  A  +SPGYSP   YSPTSP +G
Sbjct: 1540 GGFTEYQPSGGFGGFSPA-----ATSPA-GYSPSSPFSANPTSPGYSPTSSYSPTSPGMG 1593

Query: 332  ARGGPAAGYASPQ---SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS-- 496
                      SP+   SPG+ P SP++A             P+SPAYSP SP Y  AS  
Sbjct: 1594 I--------TSPRFMTSPGFSPASPSFA-------------PTSPAYSPTSPAYGQASPT 1632

Query: 497  SPAYQPPS 520
            SP+Y P S
Sbjct: 1633 SPSYSPTS 1640

[120][TOP]
>UniRef100_C5E245 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340
            RepID=C5E245_LACTC
          Length = 1740

 Score =  103 bits (257), Expect = 7e-21
 Identities = 64/154 (41%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
 Frame = +2

Query: 68   GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 247
            G  +PG SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP  
Sbjct: 1538 GVASPGFSPT---SPAYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS- 1585

Query: 248  GYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
             YSP++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+    
Sbjct: 1586 -YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS---- 1636

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1637 --PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1667

 Score =  102 bits (255), Expect = 1e-20
 Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
 Frame = +2

Query: 35   SSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
            +S    G A+PG    +P  SP    +P  SP SP Y+  SP +        +  + +Y+
Sbjct: 1532 TSPGFGGVASPGFSPTSPAYSPT---SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYS 1587

Query: 209  PASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQ 370
            P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +   SP 
Sbjct: 1588 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1645

Query: 371  SPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1646 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1695

 Score =  102 bits (254), Expect = 2e-20
 Identities = 67/171 (39%), Positives = 92/171 (53%), Gaps = 4/171 (2%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            FSP++ S      +       G    G  +P    +  G A  SP FGG    G +  + 
Sbjct: 1493 FSPLVDSGSTDAMSGGFTAYGGADYGGASSPF---SGYGDAPTSPGFGGVASPGFSPTSP 1549

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
            AY+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P +   SP 
Sbjct: 1550 AYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT 1603

Query: 371  SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1604 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1653

 Score =  101 bits (252), Expect = 3e-20
 Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 7/178 (3%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A+  FSP  S A +    +    +P  SP    +P  SP SP Y+  SP +        +
Sbjct: 1540 ASPGFSPT-SPAYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSP-TSPSYS 1594

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPA 349
              + +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P 
Sbjct: 1595 PTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1652

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1653 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1709

 Score =  100 bits (249), Expect = 6e-20
 Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1590 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1636

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1637 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1692

Query: 428  AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SP+Y +  SP+Y P S
Sbjct: 1693 PTSPSYSPTSPSYSPTSPSY-SPGSPSYSPGS 1723

 Score = 90.5 bits (223), Expect = 6e-17
 Identities = 56/138 (40%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1604 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1650

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1651 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1706

Query: 428  AANV-YSPSSPAYSPFSP 478
              +  YSP SP+YSP SP
Sbjct: 1707 PTSPSYSPGSPSYSPGSP 1724

[121][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
            (RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
          Length = 1913

 Score =  103 bits (256), Expect = 1e-20
 Identities = 71/187 (37%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP   ++ A    +PG  TP        +P  SP SP Y+  SP +        +  +
Sbjct: 1592 SYSP---TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTS 1647

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
             +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS         P +  
Sbjct: 1648 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1705

Query: 359  ASPQSPGYVPTSPAYARPG-----TVV--AAANVYSPSSPAYSPFSPNYA------AASS 499
             SP SP Y PTSP+Y+        TVV  + +  YSP+SP+YSP SP Y         SS
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSQSYHPTVVDSSTSPSYSPTSPSYSPSSPRYTPQSPTYTPSS 1765

Query: 500  PAYQPPS 520
            P+Y P S
Sbjct: 1766 PSYSPSS 1772

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 74/182 (40%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
 Frame = +2

Query: 29   IMSSADAAGRATPGRMTPGR--SPAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAG 190
            I ++    G A P  M  G   SP G  +P M+P    A+P Y A SP  G G+  G AG
Sbjct: 1486 IPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAG 1545

Query: 191  -------GAGAYAPA-SPAYMATSPGMGYSPSTPALAVSSPG--YSPGYSPTSPSVGARG 340
                    A  ++P  SPA+  T PG   SP   +  + SPG   SP YSPTSP+   R 
Sbjct: 1546 FSPSAASDASGFSPGYSPAWSPT-PGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR- 1603

Query: 341  GPAAGYASPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              + G  +PQSP Y PTSP+Y+   P     + N YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1604 --SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN-YSPTSPSYSPTSPSY-SPTSPSYSP 1659

Query: 515  PS 520
             S
Sbjct: 1660 TS 1661

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 62/161 (38%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1647 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1693

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---------GPAAGYASPQSPGYVPTSPA 400
            P++P+ + +SP YSP    YSPTSPS                 +   SP SP Y P+SP 
Sbjct: 1694 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSQSYHPTVVDSSTSPSYSPTSPSYSPSSPR 1753

Query: 401  YA-RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            Y  +  T   ++  YSPSSP+YSP SP Y   +SP+Y P S
Sbjct: 1754 YTPQSPTYTPSSPSYSPSSPSYSPTSPKY-TPTSPSYSPSS 1793

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 65/181 (35%), Positives = 88/181 (48%), Gaps = 12/181 (6%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            +S SP  S    +   +  R TP        +P  SP+SP Y+  SP++           
Sbjct: 1734 SSTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY--------TPT 1785

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P+SP Y  TSP   YSP++P  + +SP Y   SP YSPT+P    +  P +   S
Sbjct: 1786 SPSYSPSSPEYTPTSP--KYSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYS 1839

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPP 517
            P SP Y PTSP Y+        +  YSP+SP YSP SP Y+  S         SP Y P 
Sbjct: 1840 PTSPVYTPTSPKYS------PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 1893

Query: 518  S 520
            S
Sbjct: 1894 S 1894

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 1765 SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 1809

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 1810 YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 1863

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 1864 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 1906

[122][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
            RepID=Q9XZU9_DROSU
          Length = 1889

 Score =  103 bits (256), Expect = 1e-20
 Identities = 71/201 (35%), Positives = 97/201 (48%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP YAA SPR+        
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAPSPRYASTTPNFN 1627

Query: 179  ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
                G +  A  Y+P SP Y  TS                 PG  YSPS+   + +SP Y
Sbjct: 1628 PQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSY 1687

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P++   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPSSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1747

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1748 AYSQTGAKY-SPTSPTYSPPS 1767

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            AT S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      +
Sbjct: 1725 ATPSYSPTSPNYSASPHYSPA--SPAYSQTGA---KYSPTSPTYSPPSPSYDG------S 1773

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
             G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P  
Sbjct: 1774 PGSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1832 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +P  SP    +P  SP+SP Y+  SP +        +  +  Y PA+P+Y  TSP     
Sbjct: 1684 SPSYSPT---SPSYSPSSPSYSPTSPCYSPS-SPSYSPTSPNYTPATPSYSPTSPNYSAS 1739

Query: 251  --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
              YSP++PA + +   YSP    YSP SPS     G     P +   SP SP Y PTSP 
Sbjct: 1740 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1799

Query: 401  YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
            Y+      + +N YSP+   YS  SP Y+      + SS  Y P S
Sbjct: 1800 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845

 Score = 77.8 bits (190), Expect = 4e-13
 Identities = 63/181 (34%), Positives = 82/181 (45%), Gaps = 27/181 (14%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
                +SP    SP  PA    SP Y   SP Y+ +SP     GG +  Y SP SP Y PT
Sbjct: 1555 GSSPSSPAPSMSPFYPASPSVSPSYSPTSPNYTASSP-----GGASPNY-SPSSPNYSPT 1608

Query: 392  SPAYARPGTVVA---------------AANVYSPSSPAYS-----PFSPNYAAASSPAYQ 511
            SP YA P    A               +A+ YSP+SP YS     P SP++A + S  Y 
Sbjct: 1609 SPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1668

Query: 512  P 514
            P
Sbjct: 1669 P 1669

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884

[123][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
            pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
          Length = 1811

 Score =  103 bits (256), Expect = 1e-20
 Identities = 71/201 (35%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP YAA SPR+        
Sbjct: 1496 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAASPRYASTTPNFN 1549

Query: 179  ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
                G +  A  Y+P SP Y  TS                 PG  YSPS+   + +SP Y
Sbjct: 1550 PQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSY 1609

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1610 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1669

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1670 AYSQTGAKY-SPTSPTYSPPS 1689

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            AT S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      +
Sbjct: 1647 ATPSYSPTSPNYSASPHYSPA--SPAYSQTGA---KYSPTSPTYSPPSPSYDG------S 1695

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
             G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P  
Sbjct: 1696 PGSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1753

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1754 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1803

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +P  SP+   +P  SP SP Y+  SP +        +  +  Y PA+P+Y  TSP     
Sbjct: 1613 SPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTSPNYTPATPSYSPTSPNYSAS 1661

Query: 251  --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
              YSP++PA + +   YSP    YSP SPS     G     P +   SP SP Y PTSP 
Sbjct: 1662 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1721

Query: 401  YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
            Y+      + +N YSP+   YS  SP Y+      + SS  Y P S
Sbjct: 1722 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1767

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 62/181 (34%), Positives = 81/181 (44%), Gaps = 27/181 (14%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 1418 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1476

Query: 221  AYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
                +SP    SP  PA    SP Y   SP Y+ +SP     GG +  Y SP SP Y PT
Sbjct: 1477 GSSPSSPAPSMSPYYPASPSVSPSYSPTSPNYTASSP-----GGASPNY-SPSSPNYSPT 1530

Query: 392  SPAYARPGTVVA---------------AANVYSPSSPAYS-----PFSPNYAAASSPAYQ 511
            SP YA      A               +A+ YSP+SP YS     P SP++A + S  Y 
Sbjct: 1531 SPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1590

Query: 512  P 514
            P
Sbjct: 1591 P 1591

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1689 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1741

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1742 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1795

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1796 SPAYSPSSPTF 1806

[124][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
            RepID=Q9XZS2_DROMD
          Length = 1889

 Score =  103 bits (256), Expect = 1e-20
 Identities = 71/201 (35%), Positives = 97/201 (48%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP YAA SPR+        
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAPSPRYASTTPNFN 1627

Query: 179  ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
                G +  A  Y+P SP Y  TS                 PG  YSPS+   + +SP Y
Sbjct: 1628 PQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSY 1687

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P++   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPSSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1747

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1748 AYSQTGAKY-SPTSPTYSPPS 1767

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            AT S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      +
Sbjct: 1725 ATPSYSPTSPNYSASPHYSPA--SPAYSQTGA---KYSPTSPTYSPPSPSYDG------S 1773

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
             G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P  
Sbjct: 1774 PGSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1832 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +P  SP    +P  SP+SP Y+  SP +        +  +  Y PA+P+Y  TSP     
Sbjct: 1684 SPSYSPT---SPSYSPSSPSYSPTSPCYSPS-SPSYSPTSPNYTPATPSYSPTSPNYSAS 1739

Query: 251  --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
              YSP++PA + +   YSP    YSP SPS     G     P +   SP SP Y PTSP 
Sbjct: 1740 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1799

Query: 401  YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
            Y+      + +N YSP+   YS  SP Y+      + SS  Y P S
Sbjct: 1800 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845

 Score = 77.8 bits (190), Expect = 4e-13
 Identities = 63/181 (34%), Positives = 82/181 (45%), Gaps = 27/181 (14%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
                +SP    SP  PA    SP Y   SP Y+ +SP     GG +  Y SP SP Y PT
Sbjct: 1555 GSSPSSPAPSMSPFYPASPSVSPSYSPTSPNYTASSP-----GGASPNY-SPSSPNYSPT 1608

Query: 392  SPAYARPGTVVA---------------AANVYSPSSPAYS-----PFSPNYAAASSPAYQ 511
            SP YA P    A               +A+ YSP+SP YS     P SP++A + S  Y 
Sbjct: 1609 SPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1668

Query: 512  P 514
            P
Sbjct: 1669 P 1669

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884

[125][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
            pseudoobscura RepID=Q29IN2_DROPS
          Length = 1889

 Score =  103 bits (256), Expect = 1e-20
 Identities = 71/201 (35%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP YAA SPR+        
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAASPRYASTTPNFN 1627

Query: 179  ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
                G +  A  Y+P SP Y  TS                 PG  YSPS+   + +SP Y
Sbjct: 1628 PQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSY 1687

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1747

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1748 AYSQTGAKY-SPTSPTYSPPS 1767

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            AT S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      +
Sbjct: 1725 ATPSYSPTSPNYSASPHYSPA--SPAYSQTGA---KYSPTSPTYSPPSPSYDG------S 1773

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
             G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P  
Sbjct: 1774 PGSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1832 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +P  SP+   +P  SP SP Y+  SP +        +  +  Y PA+P+Y  TSP     
Sbjct: 1691 SPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTSPNYTPATPSYSPTSPNYSAS 1739

Query: 251  --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
              YSP++PA + +   YSP    YSP SPS     G     P +   SP SP Y PTSP 
Sbjct: 1740 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1799

Query: 401  YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
            Y+      + +N YSP+   YS  SP Y+      + SS  Y P S
Sbjct: 1800 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 62/181 (34%), Positives = 81/181 (44%), Gaps = 27/181 (14%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
                +SP    SP  PA    SP Y   SP Y+ +SP     GG +  Y SP SP Y PT
Sbjct: 1555 GSSPSSPAPSMSPYYPASPSVSPSYSPTSPNYTASSP-----GGASPNY-SPSSPNYSPT 1608

Query: 392  SPAYARPGTVVA---------------AANVYSPSSPAYS-----PFSPNYAAASSPAYQ 511
            SP YA      A               +A+ YSP+SP YS     P SP++A + S  Y 
Sbjct: 1609 SPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1668

Query: 512  P 514
            P
Sbjct: 1669 P 1669

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884

[126][TOP]
>UniRef100_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
            RepID=B6AG69_9CRYT
          Length = 1927

 Score =  103 bits (256), Expect = 1e-20
 Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 6/177 (3%)
 Frame = +2

Query: 8    ATASFSPI--MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            AT+++SP   + S D  G ++   M+P        +P  SP SP Y+  SP +       
Sbjct: 1661 ATSAYSPTSPVYSGDKDGDSSSPFMSPTSPGVEPLSPNYSPTSPNYSPTSPNY-SPTSPN 1719

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAA 352
             +  +  Y+P SP Y  TSP   YSP++P  + +SP Y   SP YSPTSP+      P +
Sbjct: 1720 YSPTSPHYSPTSPHYSPTSP--HYSPTSPHYSPTSPNYSPTSPHYSPTSPNY----SPTS 1773

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
             + SP SP Y PTSP Y+      + ++  YSP+SP+Y+P SPNY + SSP Y P S
Sbjct: 1774 PHYSPTSPNYSPTSPHYSPTSPNYSPSSPHYSPTSPSYNPASPNY-SPSSPHYNPAS 1829

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 67/164 (40%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1738 SPHYSPT---SPHYSPTSPNYSPTSPHY--------SPTSPNYSPTSPHYSPTSPN--YS 1784

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P  + +SP YSP    YSPTSPS      PA+   SP SP Y P SP Y+   P   
Sbjct: 1785 PTSPHYSPTSPNYSPSSPHYSPTSPSYN----PASPNYSPSSPHYNPASPNYSPSSPQYN 1840

Query: 422  VAAANVYSPSSPAYSPFSPNYAAAS-----------SPAYQPPS 520
             A  N YSPSSP Y+P SPNY+ +S           SP Y P S
Sbjct: 1841 PALPN-YSPSSPQYNPTSPNYSPSSPNYVLSNGNIDSPQYSPSS 1883

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 65/168 (38%), Positives = 83/168 (49%), Gaps = 20/168 (11%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P+SP Y  TSP   Y+
Sbjct: 1766 SPNYSPT---SPHYSPTSPNYSPTSPHY--------SPTSPNYSPSSPHYSPTSPS--YN 1812

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGTV 421
            P++P  + SSP Y   SP YSP+SP       PA    SP SP Y PTSP Y+   P  V
Sbjct: 1813 PASPNYSPSSPHYNPASPNYSPSSPQYN----PALPNYSPSSPQYNPTSPNYSPSSPNYV 1868

Query: 422  VAAANV----YSPSSP-------AYSPFSPNYA----AASSPAYQPPS 520
            ++  N+    YSPSSP       AY P SP+Y     AA    Y P S
Sbjct: 1869 LSNGNIDSPQYSPSSPHYDQSVAAYHPTSPSYTSTNMAAEEAEYSPTS 1916

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 63/184 (34%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
 Frame = +2

Query: 50   AGRATPGRMTPGR-----SPAGRFTPR-------------MSPASPGYAAMSPRFGGGLG 175
            +G+ +P +MTP       SP+G  +P               +P SP YA  SP +G    
Sbjct: 1590 SGQFSPVQMTPRSPMSPVSPSGILSPMPYSPASPTSPLIDYTPTSPIYAVRSPAYGHETE 1649

Query: 176  GGPAG------GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSV 328
                          AY+P SP Y     G     S+P ++ +SPG    SP YSPTSP+ 
Sbjct: 1650 ERTKKRYKANIATSAYSPTSPVYSGDKDG---DSSSPFMSPTSPGVEPLSPNYSPTSPNY 1706

Query: 329  GARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAY 508
                       SP SP Y PTSP Y+        +  YSP+SP YSP SP+Y + +SP Y
Sbjct: 1707 -----------SPTSPNYSPTSPNYS------PTSPHYSPTSPHYSPTSPHY-SPTSPHY 1748

Query: 509  QPPS 520
             P S
Sbjct: 1749 SPTS 1752

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 49/135 (36%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  +PASP Y+  SP +       PA  +  Y+P+SP Y    P   YS
Sbjct: 1801 SPHYSPT---SPSYNPASPNYSPSSPHYN------PA--SPNYSPSSPQYNPALPN--YS 1847

Query: 257  PSTPALAVSSPGYSPGYSPTSPS-VGARGGPAAGYASPQSP-------GYVPTSPAYARP 412
            PS+P    +    SP YSP+SP+ V + G   +   SP SP        Y PTSP+Y   
Sbjct: 1848 PSSPQYNPT----SPNYSPSSPNYVLSNGNIDSPQYSPSSPHYDQSVAAYHPTSPSYTST 1903

Query: 413  GTVVAAANVYSPSSP 457
                  A  YSP+SP
Sbjct: 1904 NMAAEEAE-YSPTSP 1917

[127][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score =  103 bits (256), Expect = 1e-20
 Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 24/180 (13%)
 Frame = +2

Query: 53   GRATPG--RMTPGRSPA------GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
            G A+PG    +P  SP+      G  +P  SP+SP +AA SP +        +  + +Y+
Sbjct: 1548 GAASPGFAATSPSYSPSSPGMGLGAASPSFSPSSPAFAATSPSY--------SPSSPSYS 1599

Query: 209  PASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPG 379
            P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP SP 
Sbjct: 1600 PTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPS 1653

Query: 380  YVPTSPAYARPGTVVAAANV-------------YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            Y PTSP+Y+       + +              YSP+SP+YSP SP + A +S +Y P S
Sbjct: 1654 YSPTSPSYSPTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKFNAGASTSYSPTS 1713

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A+ SFSP  S A AA   +    +P  SP    +P  SP SP Y+  SP           
Sbjct: 1573 ASPSFSP-SSPAFAATSPSYSPSSPSYSPT---SPSYSPTSPSYSPTSP----------- 1617

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG-GPAAG 355
                +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS       P + 
Sbjct: 1618 ----SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSYSPTSP 1671

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP--------AYSPFSPNYAAASSPAYQ 511
              SP SP Y PTSP+Y+        +  YSPSSP        +YSP SP+Y + +SP+Y 
Sbjct: 1672 SYSPTSPSYSPTSPSYS------PTSPSYSPSSPKFNAGASTSYSPTSPSY-SPTSPSYS 1724

Query: 512  PPS 520
            P S
Sbjct: 1725 PTS 1727

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 61/146 (41%), Positives = 77/146 (52%), Gaps = 27/146 (18%)
 Frame = +2

Query: 164  GGLGGGPAGGAGAYAPASP----------------AYMATSPGMG-------YSPSTPAL 274
            GG G G  G   AY P SP                +Y  +SPGMG       +SPS+PA 
Sbjct: 1525 GGFGHGGDGSGSAYTPTSPFSSFGAASPGFAATSPSYSPSSPGMGLGAASPSFSPSSPAF 1584

Query: 275  AVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VY 442
            A +SP Y   SP YSPTSPS      P +   SP SP Y PTSP+Y+      +  +  Y
Sbjct: 1585 AATSPSYSPSSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1640

Query: 443  SPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1641 SPTSPSYSPTSPSY-SPTSPSYSPTS 1665

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 62/174 (35%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A A+ SP  S +  +   T    +P        +P  SP SP Y+  SP +        +
Sbjct: 1583 AFAATSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYS 1641

Query: 188  GGAGAYAPASPAYMATSPGMG---YSPSTPALAVSSPGYSP---GYSPTSPSVGA----- 334
              + +Y+P SP+Y  TSP      YSP++P+ + +SP YSP    YSPTSPS        
Sbjct: 1642 PTSPSYSPTSPSYSPTSPSYSPTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKF 1701

Query: 335  RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
              G +  Y SP SP Y PTSP+             YSP+SP+YSP SP+Y+  S
Sbjct: 1702 NAGASTSY-SPTSPSYSPTSPS-------------YSPTSPSYSPTSPSYSPGS 1741

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 35/89 (39%), Positives = 44/89 (49%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP+F        AG + +Y+P SP+Y  TSP   YS
Sbjct: 1677 SPSYSPT---SPSYSPTSPSYSPSSPKFN-------AGASTSYSPTSPSYSPTSPS--YS 1724

Query: 257  PSTPALAVSSPGYSPGYSPTSPSVGARGG 343
            P+           SP YSPTSPS     G
Sbjct: 1725 PT-----------SPSYSPTSPSYSPGSG 1742

[128][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5E6J4_LODEL
          Length = 1745

 Score =  103 bits (256), Expect = 1e-20
 Identities = 70/195 (35%), Positives = 100/195 (51%), Gaps = 22/195 (11%)
 Frame = +2

Query: 2    INATASFSPIMSSADAAGRATPGRMTPGRSPA--GRFTPRMSPASPGYAAMSPRFGG--- 166
            ++  A FSP+ ++   +     G  + G  P   G  +P     +PGY   SP +GG   
Sbjct: 1479 VDEGAGFSPVHNAM--SDNMNGGLTSYGGQPTSPGNTSPFSYGTTPGYGGTSPGYGGTSP 1536

Query: 167  GLGGGPAGGA-----GAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---GY 307
            G G  P   +      +Y+P SP+Y  TSP        YSP++P+ + +SP YSP    Y
Sbjct: 1537 GYGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596

Query: 308  SPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFS 475
            SPTSPS         P +   SP SP Y PTSP+Y+      +  +  YSP+SP+YSP S
Sbjct: 1597 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656

Query: 476  PNYAAASSPAYQPPS 520
            P+Y + +SP+Y P S
Sbjct: 1657 PSY-SPTSPSYSPTS 1670

 Score =  101 bits (251), Expect = 4e-20
 Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1544 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1590

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1591 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1646

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1647 PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1677

 Score =  101 bits (251), Expect = 4e-20
 Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1551 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1597

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1598 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653

Query: 428  AAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1654 PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1684

 Score =  100 bits (250), Expect = 5e-20
 Identities = 63/154 (40%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1607 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1653

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP+Y+    
Sbjct: 1654 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPSYSPTSPSYS---- 1709

Query: 419  VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                +  YSP+SP YSP SPNY +  SP Y+P S
Sbjct: 1710 --PTSPQYSPTSPQYSPRSPNY-SPKSPEYKPKS 1740

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP+               Y+P SP Y  TSP   YS
Sbjct: 1663 SPSYSPT---SPSYSPTSPSYSPTSPQ---------------YSPTSPQYSPTSP--SYS 1702

Query: 257  PSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
            P++P+ + +SP Y   SP YSP SP+            SP+SP Y P SP+
Sbjct: 1703 PTSPSYSPTSPQYSPTSPQYSPRSPNY-----------SPKSPEYKPKSPS 1742

[129][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
            RepID=A1YIA7_ISSOR
          Length = 1647

 Score =  103 bits (256), Expect = 1e-20
 Identities = 66/159 (41%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
 Frame = +2

Query: 68   GRMTPGRSPA----GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 235
            G  +P   P     G  +P  SP SP Y+  SP +        +  + AY+P SPAY  T
Sbjct: 1457 GATSPSYGPTSPSYGPTSPSYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPT 1508

Query: 236  SPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
            SP   YSP++PA + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+
Sbjct: 1509 SPA--YSPTSPAYSPTSPAYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS 1562

Query: 407  RPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
                  +  +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1563 PTSPQYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1600

 Score =  102 bits (253), Expect = 2e-20
 Identities = 66/158 (41%), Positives = 84/158 (53%), Gaps = 7/158 (4%)
 Frame = +2

Query: 68   GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 247
            G  +P  SP    +P  SP SP Y+  SP +        +  + AY+P SPAY  TSP  
Sbjct: 1471 GPTSPSYSPT---SPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSPA- 1518

Query: 248  GYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYAR 409
             YSP++PA + +SP YSP    YSPTSPS         P +   SP SP Y PTSP Y+ 
Sbjct: 1519 -YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSP 1577

Query: 410  PGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
                 +  +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1578 TSPQYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1614

 Score =  100 bits (248), Expect = 8e-20
 Identities = 64/155 (41%), Positives = 83/155 (53%), Gaps = 7/155 (4%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + AY+P SPAY  TSP   YS
Sbjct: 1488 SPAYSPT---SPAYSPTSPAYSPTSPAY--------SPTSPAYSPTSPAYSPTSPS--YS 1534

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P+ + +SP YSP    YSPTSPS         P +   SP SP Y PTSP Y+    
Sbjct: 1535 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSP 1594

Query: 419  VVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1595 QYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1628

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 63/138 (45%), Positives = 81/138 (58%), Gaps = 5/138 (3%)
 Frame = +2

Query: 122  PASP-GYAAMSPRFGGGLGG-GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 295
            P SP GY A SP +G      GP   + +Y+P SPAY  TSP   YSP++PA + +SP Y
Sbjct: 1450 PTSPFGYGATSPSYGPTSPSYGPT--SPSYSPTSPAYSPTSPA--YSPTSPAYSPTSPAY 1505

Query: 296  SP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS 466
            SP    YSPTSP+      P +   SP SP Y PTSP+Y+        +  YSP+SP+YS
Sbjct: 1506 SPTSPAYSPTSPAYS----PTSPAYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYS 1555

Query: 467  PFSPNYAAASSPAYQPPS 520
            P SP+Y + +SP Y P S
Sbjct: 1556 PTSPSY-SPTSPQYSPTS 1572

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 64/173 (36%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1481 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY--------SPTSPS 1532

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSP          P +   S
Sbjct: 1533 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1590

Query: 365  PQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSP Y+      +  +  YSP+SP YSP SP Y + +SP Y P S
Sbjct: 1591 PTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY-SPTSPQYSPTS 1642

 Score = 90.9 bits (224), Expect = 5e-17
 Identities = 57/138 (41%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
 Frame = +2

Query: 122  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPAS-PAYMATSPGMGYSPSTPALAVSSPGY- 295
            P +    A SP    G G   +GG   Y   +  AY  TSP  GY  ++P+   +SP Y 
Sbjct: 1413 PMAADNVAFSPLITAGSGDDRSGGFTEYGSGNMSAYQPTSP-FGYGATSPSYGPTSPSYG 1471

Query: 296  --SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYS 466
              SP YSPTSP+      P +   SP SP Y PTSPAY+      +  +  YSP+SPAYS
Sbjct: 1472 PTSPSYSPTSPAY----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1527

Query: 467  PFSPNYAAASSPAYQPPS 520
            P SP+Y + +SP+Y P S
Sbjct: 1528 PTSPSY-SPTSPSYSPTS 1544

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 59/162 (36%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1495 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY--------SPTSPS 1546

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
            Y+P SP+Y  TSP   YSP++P  + +SP YSP    YSPTSP          P +   S
Sbjct: 1547 YSPTSPSYSPTSPS--YSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1604

Query: 365  PQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYA 487
            P SP Y PTSP Y+      +  +  YSP+SP YSP SP+Y+
Sbjct: 1605 PTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYS 1646

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 56/156 (35%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1502 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1553

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYAS 364
            Y+P SP+Y  TSP   YSP++P  + +SP YSP    YSPTSP          P +   S
Sbjct: 1554 YSPTSPSYSPTSPQ--YSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1611

Query: 365  PQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSP 469
            P SP Y PTSP Y+      +  +  YSP+SP+YSP
Sbjct: 1612 PTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYSP 1647

[130][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score =  103 bits (256), Expect = 1e-20
 Identities = 65/151 (43%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP F        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1578 SPSYSPT---SPSYSPTSPSYSPTSP-FYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YS 1631

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 1632 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS------P 1681

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSPSSP+YSP SP+Y + SSP+Y P S
Sbjct: 1682 TSPSYSPSSPSYSPSSPSY-SPSSPSYSPSS 1711

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 60/166 (36%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
 Frame = +2

Query: 62   TPGRMTPGRSPA-GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG-----------AY 205
            TPG  TP  S   G  TP  +P     +  +  F G          G            Y
Sbjct: 1487 TPGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFRGDFSPSAMNSPGYNANKSYGSSYQY 1546

Query: 206  APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYV 385
             P SP Y  TSP   YSP++P+ + +SP YSP    TSPS            SP SP Y 
Sbjct: 1547 FPQSPTYSPTSPS--YSPTSPSYSPTSPSYSP----TSPSY-----------SPTSPSYS 1589

Query: 386  PTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1590 PTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1634

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 51/140 (36%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
 Frame = +2

Query: 77   TPGRSPAGRF----TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 244
            +P  SP   F    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP 
Sbjct: 1592 SPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPS 1650

Query: 245  MGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYA 406
              YSP++P+ + +SP YSP    YSPTSPS         P++   SP SP Y P+SP+  
Sbjct: 1651 --YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPS-- 1706

Query: 407  RPGTVVAAANVYSPSSPAYS 466
                       YSPSSP ++
Sbjct: 1707 -----------YSPSSPTFT 1715

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 49/133 (36%), Positives = 68/133 (51%)
 Frame = +2

Query: 122  PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP 301
            P +PG  + +P +  G G          AP SP +  T  G  +SPS    A++SPGY+ 
Sbjct: 1485 PDTPG--SQTPSYSYGDGSTTPFHNPYDAPLSP-FNETFRG-DFSPS----AMNSPGYNA 1536

Query: 302  GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
              S          G +  Y  PQSP Y PTSP+Y+        +  YSP+SP+YSP SP+
Sbjct: 1537 NKSY---------GSSYQYF-PQSPTYSPTSPSYS------PTSPSYSPTSPSYSPTSPS 1580

Query: 482  YAAASSPAYQPPS 520
            Y + +SP+Y P S
Sbjct: 1581 Y-SPTSPSYSPTS 1592

[131][TOP]
>UniRef100_Q99366 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99366_SOYBN
          Length = 625

 Score =  102 bits (255), Expect = 1e-20
 Identities = 70/171 (40%), Positives = 88/171 (51%), Gaps = 22/171 (12%)
 Frame = +2

Query: 74  MTPGRSPAGRFTPRMSPASPGY-------------AAMSPRFGGGLGGGPAGGAGAYAPA 214
           MTP RSP           SP Y             A  SP + GG+   P    G Y+P+
Sbjct: 316 MTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTTDAQFSP-YVGGMAFSPTSSPG-YSPS 373

Query: 215 SPAYMATSPGM-----GYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
           SP Y  +SPG      GYSP++P  + +SP YSP   GYSPTSP+      P +   SP 
Sbjct: 374 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY----SPTSPSYSPT 429

Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           SP Y PTSP+Y+      +  +  YSP+SPAYSP SP Y + +SPAY P S
Sbjct: 430 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY-SPTSPAYSPTS 479

 Score =  100 bits (250), Expect = 5e-20
 Identities = 70/185 (37%), Positives = 91/185 (49%), Gaps = 19/185 (10%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S    +   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 416 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY--------SPTSPA 467

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG----ARGGPAAGYA 361
           Y+P SPAY  TSP   YSP++P+ + +SP YSP    YSPTSPS      A    + GY+
Sbjct: 468 YSPTSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 525

Query: 362 ------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSP------AYSPFSPNYAAASSPA 505
                 SP SP Y PTSP+Y       + +  YSPSSP       YSP SPNY + +SP+
Sbjct: 526 PTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNY-SPTSPS 584

Query: 506 YQPPS 520
           Y P S
Sbjct: 585 YSPTS 589

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 66/172 (38%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
 Frame = +2

Query: 17  SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
           S+SP   S      A     +P  SP    +P  SP SP Y+  SP +        +  +
Sbjct: 446 SYSPTSPSYSPTSPAY-SPTSPAYSPT---SPAYSPTSPSYSPTSPSY--------SPTS 493

Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---GPAAGY 358
            +Y+P SP+Y  TSP   YSP++PA + +SPGYSP    YSPTSPS         P +  
Sbjct: 494 PSYSPTSPSYSPTSPS--YSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAK 551

Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            SP S  Y P+SP  +        +  YSP+SP+YSP SP+Y + SSP Y P
Sbjct: 552 YSP-SLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSY-SPSSPTYSP 601

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 49/122 (40%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS----PG 244
           +P  SP    +P  SP SPGY+  SP +        +  + +Y+P SP+Y   S    P 
Sbjct: 507 SPSYSPT---SPAYSPTSPGYSPTSPSY--------SPTSPSYSPTSPSYNPQSAKYSPS 555

Query: 245 MGYSPSTPALAVSSP--GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
           + YSPS+P L+ SSP    SP YSPTSPS            SP SP Y P+SP Y+   T
Sbjct: 556 LAYSPSSPRLSPSSPYSPTSPNYSPTSPSY-----------SPTSPSYSPSSPTYSPSRT 604

Query: 419 VV 424
           VV
Sbjct: 605 VV 606

[132][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
            RepID=Q9XZS1_DROGU
          Length = 1889

 Score =  102 bits (255), Expect = 1e-20
 Identities = 71/201 (35%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP YAA SPR+        
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAPSPRYASTTPNFN 1627

Query: 179  ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
                G +  A  Y+P SP Y  TS                 PG  YSPS+   + +SP Y
Sbjct: 1628 PQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSY 1687

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1747

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1748 AYSQTGAKY-SPTSPTYSPPS 1767

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            AT S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      +
Sbjct: 1725 ATPSYSPTSPNYSASPHYSPA--SPAYSQTGA---KYSPTSPTYSPPSPSYDG------S 1773

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
             G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P  
Sbjct: 1774 PGSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1832 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +P  SP+   +P  SP SP Y+  SP +        +  +  Y PA+P+Y  TSP     
Sbjct: 1691 SPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTSPNYTPATPSYSPTSPNYSAS 1739

Query: 251  --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
              YSP++PA + +   YSP    YSP SPS     G     P +   SP SP Y PTSP 
Sbjct: 1740 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1799

Query: 401  YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
            Y+      + +N YSP+   YS  SP Y+      + SS  Y P S
Sbjct: 1800 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845

 Score = 77.8 bits (190), Expect = 4e-13
 Identities = 63/181 (34%), Positives = 82/181 (45%), Gaps = 27/181 (14%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
                +SP    SP  PA    SP Y   SP Y+ +SP     GG +  Y SP SP Y PT
Sbjct: 1555 GSSPSSPAPSMSPYYPASPSVSPSYSPTSPNYTASSP-----GGASPNY-SPSSPNYSPT 1608

Query: 392  SPAYARPGTVVA---------------AANVYSPSSPAYS-----PFSPNYAAASSPAYQ 511
            SP YA P    A               +A+ YSP+SP YS     P SP++A + S  Y 
Sbjct: 1609 SPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1668

Query: 512  P 514
            P
Sbjct: 1669 P 1669

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884

[133][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
            RepID=Q7Q3C6_ANOGA
          Length = 1878

 Score =  102 bits (255), Expect = 1e-20
 Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 15/183 (8%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG----LGGGP 184
            SFSP   S DA+G + P   +P R       P MSP  P   +MSP +           P
Sbjct: 1526 SFSPSAQS-DASGMS-PSSWSPIRGSPSSPGPSMSPYPPSSPSMSPSYSPSSPNYAPNSP 1583

Query: 185  AGGAGAYAPASPAYMATSP-----GMGYSPSTPALAVSSPGY---SPGYSPTSP--SVGA 334
             G + +Y+P SP Y   SP        YSPS+P +  ++  Y   SP YSP SP     A
Sbjct: 1584 GGASPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSATQNYSPTSPSYSPMSPMHPTSA 1643

Query: 335  RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQ 511
                + GY SP SP Y PTSP+Y+    V +  +  YSPSSP+YSP SP+Y + +SP+Y 
Sbjct: 1644 SNFASPGY-SPTSPSYSPTSPSYSPSSPVFSPTSPSYSPSSPSYSPTSPSY-SPTSPSYS 1701

Query: 512  PPS 520
            P S
Sbjct: 1702 PTS 1704

 Score =  100 bits (248), Expect = 8e-20
 Identities = 67/179 (37%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMT----PGRSPAGRFTPRMSPASPGYAAMSPRFGGGL 172
            +AT ++SP   S        P   +    PG SP    +P  SP SP Y+  SP F    
Sbjct: 1620 SATQNYSPTSPSYSPMSPMHPTSASNFASPGYSPT---SPSYSPTSPSYSPSSPVFSP-T 1675

Query: 173  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGG 343
                +  + +Y+P SP+Y  TSP   YSP++P     +P YSP    YSPTSP       
Sbjct: 1676 SPSYSPSSPSYSPTSPSYSPTSPS--YSPTSPNFTPVTPSYSPSSPNYSPTSPHYS---- 1729

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            PA+   SP SP Y PTSP+Y+        +  Y+P+SP Y   SPNY + +SP+Y P S
Sbjct: 1730 PASPSYSPSSPKYSPTSPSYSPTSPSYIGSPHYTPASPQYGQASPNY-SPTSPSYSPSS 1787

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 66/185 (35%), Positives = 87/185 (47%), Gaps = 29/185 (15%)
 Frame = +2

Query: 17   SFSPIMSS-ADAAGRATPGRMTPGRSPAGR----FTPRMSPASPGYAAMSPRFGGGLGG- 178
            S+SP   S +  +   TP  +TP  SP+       +P  SPASP Y+  SP++       
Sbjct: 1692 SYSPTSPSYSPTSPNFTP--VTPSYSPSSPNYSPTSPHYSPASPSYSPSSPKYSPTSPSY 1749

Query: 179  GPAG----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARG-- 340
             P      G+  Y PASP Y   SP   YSP++P+ + SSP +SPG S    S+G+    
Sbjct: 1750 SPTSPSYIGSPHYTPASPQYGQASPN--YSPTSPSYSPSSPQHSPGSSSNHYSIGSSSYS 1807

Query: 341  ------GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV--------YSPSSPA---YSP 469
                   P     SP SP Y PTSP Y       + ++         YSPSSPA   YSP
Sbjct: 1808 QTPAPYSPNMSSYSPSSPKYSPTSPVYTSSSPTYSPSSPAYSPTPQGYSPSSPASPTYSP 1867

Query: 470  FSPNY 484
             SP+Y
Sbjct: 1868 TSPSY 1872

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG-----GAGAYAPASPAYMATSP 241
            +P  SP+   +P+ SP SP Y+  SP + G     PA       +  Y+P SP+Y  +SP
Sbjct: 1732 SPSYSPS---SPKYSPTSPSYSPTSPSYIGSPHYTPASPQYGQASPNYSPTSPSYSPSSP 1788

Query: 242  GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
                  S+   ++ S  YS   +P SP++ +         SP SP Y PTSP Y      
Sbjct: 1789 QHSPGSSSNHYSIGSSSYSQTPAPYSPNMSS--------YSPSSPKYSPTSPVY------ 1834

Query: 422  VAAANVYSPSSPAYSPFSPNYAAAS--SPAYQPPS 520
             +++  YSPSSPAYSP    Y+ +S  SP Y P S
Sbjct: 1835 TSSSPTYSPSSPAYSPTPQGYSPSSPASPTYSPTS 1869

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/149 (37%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
 Frame = +2

Query: 83   GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA-SPAYMATSPGMGYSP 259
            G +     TP    A+PGY   SP        GPA G     P+ SP+  + + GM  S 
Sbjct: 1490 GSAATPSMTPWQQSATPGYGGWSP-------SGPASGMTPGGPSFSPSAQSDASGMSPSS 1542

Query: 260  STPAL-AVSSPGYSPG-YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAA 433
             +P   + SSPG S   Y P+SPS+           SP SP Y P SP  A P       
Sbjct: 1543 WSPIRGSPSSPGPSMSPYPPSSPSMSPS-------YSPSSPNYAPNSPGGASPS------ 1589

Query: 434  NVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              YSP+SP YSP SP Y+  SS  Y P S
Sbjct: 1590 --YSPTSPGYSPPSPQYSPGSS-NYSPSS 1615

[134][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
            RepID=B4H2R8_DROPE
          Length = 1804

 Score =  102 bits (255), Expect = 1e-20
 Identities = 71/197 (36%), Positives = 94/197 (47%), Gaps = 29/197 (14%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG------ 178
            S+SP   +  A+   +PG  +P  SP+   +P  SP SP YAA SPR+            
Sbjct: 1512 SYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYAAASPRYASTTPNFNPQST 1565

Query: 179  GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGYSP-- 301
            G +  A  Y+P SP Y  TS                 PG  YSPS+   + +SP YSP  
Sbjct: 1566 GYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSYSPTS 1625

Query: 302  -GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
              YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SPAYS 
Sbjct: 1626 PSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASPAYSQ 1685

Query: 470  FSPNYAAASSPAYQPPS 520
                Y + +SP Y PPS
Sbjct: 1686 TGAKY-SPTSPTYSPPS 1701

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 66/177 (37%), Positives = 86/177 (48%), Gaps = 31/177 (17%)
 Frame = +2

Query: 83   GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP-----GM 247
            G +P+   TP M+P SP Y+  SP +       P G +  Y+P+SP Y  TSP       
Sbjct: 1497 GSTPS--MTPPMTPVSPSYSPTSPNY---TASSPGGASPNYSPSSPNYSPTSPLYAAASP 1551

Query: 248  GYSPSTPALAVSSPGYSP---GYSPTSP----------------------SVGARGGPAA 352
             Y+ +TP     S GYSP   GYSPTSP                      S G    P++
Sbjct: 1552 RYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSS 1611

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP SP Y PTSP+Y+      +  +  YSP+SP+YSP SPNY  A +P+Y P S
Sbjct: 1612 TNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPA-TPSYSPTS 1667

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +P  SP+   +P  SP SP Y+  SP +        +  +  Y PA+P+Y  TSP     
Sbjct: 1625 SPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTSPNYTPATPSYSPTSPNYSAS 1673

Query: 251  --YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPA 400
              YSP++PA + +   YSP    YSP SPS     G     P +   SP SP Y PTSP 
Sbjct: 1674 PHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL 1733

Query: 401  YARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
            Y+      + +N YSP+   YS  SP Y+      + SS  Y P S
Sbjct: 1734 YSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1779

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 59/167 (35%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  +PA+P Y+  SP +           +  Y+PASPAY  T  G  YS
Sbjct: 1646 SPSYSPT---SPNYTPATPSYSPTSPNYSA---------SPHYSPASPAYSQT--GAKYS 1691

Query: 257  PSTPALAVSSPGY-----SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA------Y 403
            P++P  +  SP Y     SP Y+P SP       PA+   SP SP Y P+SP       Y
Sbjct: 1692 PTSPTYSPPSPSYDGSPGSPQYTPGSPQYS----PASPKYSPTSPLYSPSSPQHSPSNQY 1747

Query: 404  ARPGTVVAAAN--------VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +  G+  +A +        +YSPSS  YSP SP Y   ++  Y P S
Sbjct: 1748 SPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTY-TPTARNYSPTS 1793

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 56/153 (36%), Positives = 71/153 (46%), Gaps = 33/153 (21%)
 Frame = +2

Query: 161  GGGLGGGPAG--GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG--------YSPGYS 310
            G  + GG A   G G+    +P     SP   YSP++P    SSPG         SP YS
Sbjct: 1483 GSSMLGGTAMFIGGGSTPSMTPPMTPVSPS--YSPTSPNYTASSPGGASPNYSPSSPNYS 1540

Query: 311  PTSPSVGARG-----------------GPAAGYASPQSPGYVPT-----SPAYARPGT-V 421
            PTSP   A                    P+A   SP SP Y PT     SP++A  G+ +
Sbjct: 1541 PTSPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNM 1600

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  N YSPSS  YSP SP+Y + +SP+Y P S
Sbjct: 1601 YSPGNAYSPSSTNYSPNSPSY-SPTSPSYSPSS 1632

[135][TOP]
>UniRef100_Q75A34 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Eremothecium
            gossypii RepID=RPB1_ASHGO
          Length = 1745

 Score =  102 bits (255), Expect = 1e-20
 Identities = 63/151 (41%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +PG SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1542 SPGFSPT---SPAYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1588

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 1589 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS------P 1638

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1639 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1668

 Score =  102 bits (253), Expect = 2e-20
 Identities = 65/170 (38%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1542 SPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 1593

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP S
Sbjct: 1594 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTS 1647

Query: 374  PGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1648 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1696

 Score =  101 bits (252), Expect = 3e-20
 Identities = 67/171 (39%), Positives = 93/171 (54%), Gaps = 4/171 (2%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            FSP++ +  +   A+ G    G +  G  T   S    G    SP FG     G +  + 
Sbjct: 1493 FSPLVEAGTSDAIASGGFTAYGGADYGGATSPFS--GYGNGPTSPGFGDVSSPGFSPTSP 1550

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            AY+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP 
Sbjct: 1551 AYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPT 1604

Query: 371  SPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1605 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1654

 Score =  101 bits (251), Expect = 4e-20
 Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1577 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1623

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1624 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1679

Query: 428  AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1680 PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1710

 Score =  100 bits (248), Expect = 8e-20
 Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1591 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1637

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1638 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1693

Query: 428  AANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +  YSP+SP+YSP SP+Y + +SP Y P S
Sbjct: 1694 PTSPSYSPTSPSYSPTSPSY-SPTSPQYSPRS 1724

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1605 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1651

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1652 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1707

Query: 428  AANV-YSPSSPAYSPFSPNYA 487
              +  YSP+SP YSP SP+Y+
Sbjct: 1708 PTSPSYSPTSPQYSPRSPSYS 1728

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1633 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1679

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS            SP SP Y PTSP          
Sbjct: 1680 PTSPSYSPTSPSYSPTSPSYSPTSPSY-----------SPTSPSYSPTSPQ--------- 1719

Query: 428  AANVYSPSSPAYSP 469
                YSP SP+YSP
Sbjct: 1720 ----YSPRSPSYSP 1729

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 63/159 (39%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
 Frame = +2

Query: 68   GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA-GGAGAYAPASPAYMATSPG 244
            G  TP  S AG    ++          SP    G     A GG  AY  A     ATSP 
Sbjct: 1469 GGATPYNSDAGLVNTKVDIKDE--LMFSPLVEAGTSDAIASGGFTAYGGADYGG-ATSPF 1525

Query: 245  MGYS--PSTPALA-VSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
             GY   P++P    VSSPG+SP    YSPTSPS            SP SP Y PTSP+Y+
Sbjct: 1526 SGYGNGPTSPGFGDVSSPGFSPTSPAYSPTSPSY-----------SPTSPSYSPTSPSYS 1574

Query: 407  RPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                  +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1575 PTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1612

[136][TOP]
>UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
            RepID=B0XMU6_ASPFC
          Length = 1750

 Score =  102 bits (254), Expect = 2e-20
 Identities = 71/183 (38%), Positives = 98/183 (53%), Gaps = 13/183 (7%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            T+S+SP   ++   G  +P  MT PG SPA   +P  +P SP Y+  SP +G      P+
Sbjct: 1583 TSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQASPTSPS 1636

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG------ 340
                 Y+P SP +  TSP   YSP++P+ + +SP +SP    YSPTSP++G  G      
Sbjct: 1637 -----YSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPT 1689

Query: 341  GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYS---PSSPAYSPFSPNYAAASSPAYQ 511
             P +   +P SPG+ PTSP    P +   A +  S   P+SP YSP SP    A SP+Y 
Sbjct: 1690 SPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSP----AFSPSYV 1745

Query: 512  PPS 520
            P S
Sbjct: 1746 PSS 1748

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 67/171 (39%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            FSP  +S      ++P    P  SP    T   SP SPG    SPRF    G  PA  + 
Sbjct: 1555 FSPAATSPAGYSPSSPFSANP-TSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPA--SP 1611

Query: 200  AYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSPGYSPTSPSVGARG---GPAAGYASP 367
            ++AP SPAY  TSP  G  SP++P+ + +SPG+SP    TSP+         PA+   SP
Sbjct: 1612 SFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFSP 1667

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP Y PTSPA    G  ++     SP+SP Y+P SP ++  S   Y P S
Sbjct: 1668 TSPSYSPTSPAIGGAGRHLSPT---SPTSPKYTPTSPGWSPTSPQTYSPTS 1715

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 62/143 (43%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
 Frame = +2

Query: 119  SPASPGYAAMSPRFGGGLGGGPAGG-AGAYAPASPAYMATSPGMGYSPSTPALA-VSSPG 292
            S  SP   A +   GG     P GG  G ++PA     ATSP  GYSPS+P  A  +SPG
Sbjct: 1526 SAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPA-----ATSPA-GYSPSSPFSANPTSPG 1579

Query: 293  YSP--GYSPTSPSVGARGGPAAGYASPQ---SPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            YSP   YSPTSP +G          SP+   SPG+ P SP++A             P+SP
Sbjct: 1580 YSPTSSYSPTSPGMGI--------TSPRFMTSPGFSPASPSFA-------------PTSP 1618

Query: 458  AYSPFSPNYAAAS--SPAYQPPS 520
            AYSP SP Y  AS  SP+Y P S
Sbjct: 1619 AYSPTSPAYGQASPTSPSYSPTS 1641

[137][TOP]
>UniRef100_A1D1U9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
            RepID=A1D1U9_NEOFI
          Length = 1750

 Score =  102 bits (254), Expect = 2e-20
 Identities = 71/183 (38%), Positives = 98/183 (53%), Gaps = 13/183 (7%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            T+S+SP   ++   G  +P  MT PG SPA   +P  +P SP Y+  SP +G      P+
Sbjct: 1583 TSSYSP---TSPGMGITSPRFMTSPGFSPA---SPSFAPTSPAYSPTSPAYGQASPTSPS 1636

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG------ 340
                 Y+P SP +  TSP   YSP++P+ + +SP +SP    YSPTSP++G  G      
Sbjct: 1637 -----YSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPT 1689

Query: 341  GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYS---PSSPAYSPFSPNYAAASSPAYQ 511
             P +   +P SPG+ PTSP    P +   A +  S   P+SP YSP SP    A SP+Y 
Sbjct: 1690 SPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSP----AFSPSYV 1745

Query: 512  PPS 520
            P S
Sbjct: 1746 PSS 1748

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 67/171 (39%), Positives = 87/171 (50%), Gaps = 4/171 (2%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            FSP  +S      ++P    P  SP    T   SP SPG    SPRF    G  PA  + 
Sbjct: 1555 FSPAATSPAGYSPSSPFSANP-TSPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPA--SP 1611

Query: 200  AYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSPGYSPTSPSVGARG---GPAAGYASP 367
            ++AP SPAY  TSP  G  SP++P+ + +SPG+SP    TSP+         PA+   SP
Sbjct: 1612 SFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFSP 1667

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP Y PTSPA    G  ++     SP+SP Y+P SP ++  S   Y P S
Sbjct: 1668 TSPSYSPTSPAIGGAGRHLSPT---SPTSPKYTPTSPGWSPTSPQTYSPTS 1715

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 62/143 (43%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
 Frame = +2

Query: 119  SPASPGYAAMSPRFGGGLGGGPAGG-AGAYAPASPAYMATSPGMGYSPSTPALA-VSSPG 292
            S  SP   A +   GG     P GG  G ++PA     ATSP  GYSPS+P  A  +SPG
Sbjct: 1526 SAFSPIRQAGAESPGGFTEYQPTGGFGGGFSPA-----ATSPA-GYSPSSPFSANPTSPG 1579

Query: 293  YSP--GYSPTSPSVGARGGPAAGYASPQ---SPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            YSP   YSPTSP +G          SP+   SPG+ P SP++A             P+SP
Sbjct: 1580 YSPTSSYSPTSPGMGI--------TSPRFMTSPGFSPASPSFA-------------PTSP 1618

Query: 458  AYSPFSPNYAAAS--SPAYQPPS 520
            AYSP SP Y  AS  SP+Y P S
Sbjct: 1619 AYSPTSPAYGQASPTSPSYSPTS 1641

[138][TOP]
>UniRef100_Q99367 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99367_SOYBN
          Length = 494

 Score =  101 bits (252), Expect = 3e-20
 Identities = 71/172 (41%), Positives = 92/172 (53%), Gaps = 23/172 (13%)
 Frame = +2

Query: 74  MTPGRSPA-------GRFTP--------RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYA 208
           MTP RSP        G  +P        R+SP S   A  SP + GG+   P    G Y+
Sbjct: 156 MTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSD--AQFSP-YVGGMAFSPTSSPG-YS 211

Query: 209 PASPAYMATSPGM-----GYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
           P+SP Y  +SPG      GYSP++P  + +SPGYSP    YSP+SP       P +   S
Sbjct: 212 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY----SPTSPAYS 267

Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           P SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SPAY P S
Sbjct: 268 PTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTS 312

 Score =  100 bits (250), Expect = 5e-20
 Identities = 71/185 (38%), Positives = 91/185 (49%), Gaps = 19/185 (10%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + A
Sbjct: 256 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPA 307

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVG----ARGGPAAGYA 361
           Y+P SPAY  TSP   YSP++P+ + +SP YSP    YSPTSPS      A    + GY+
Sbjct: 308 YSPTSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 365

Query: 362 ------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSP------AYSPFSPNYAAASSPA 505
                 SP SP Y PTSP+Y       + +  YSPSSP       YSP SPNY + +SP+
Sbjct: 366 PTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNY-SPTSPS 424

Query: 506 YQPPS 520
           Y P S
Sbjct: 425 YSPTS 429

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 67/173 (38%), Positives = 87/173 (50%), Gaps = 25/173 (14%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 305 SPAYSPT---SPAYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 351

Query: 257 PSTPALAVSSPGYSP----------GYSPTSPSVG---ARGGPAAGYA------------ 361
           P++PA + +SPGYSP           YSPTSPS     A+  P+  Y+            
Sbjct: 352 PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPY 411

Query: 362 SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           SP SP Y PTSP+Y+        +  YSPSSP YSP SP Y +  SP Y P S
Sbjct: 412 SPTSPNYSPTSPSYS------PTSPSYSPSSPTYSPSSP-YNSGVSPDYSPSS 457

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 30/194 (15%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S    A   T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 298 SPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPS 349

Query: 203 YAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSP---------GYSPTSPSVGARG 340
           Y+P SPAY  TSPG       YSP++P+ + +SP Y+P          YSP+SP +    
Sbjct: 350 YSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSS 409

Query: 341 --GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVY--------SPSSP------AYSPF 472
              P +   SP SP Y PTSP+Y+      + ++ Y        SPSSP       YSP 
Sbjct: 410 PYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPS 469

Query: 473 SPNYAAASSPAYQP 514
            P Y+ +S+  Y P
Sbjct: 470 QPGYSPSSTSQYTP 483

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 54/148 (36%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
 Frame = +2

Query: 17  SFSPIMSSADAAGRATPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
           S+SP   ++ A    +PG    +P  SP    +P  SP SP Y   S ++   L   P+ 
Sbjct: 349 SYSP---TSPAYSPTSPGYSPTSPSYSPT---SPSYSPTSPSYNPQSAKYSPSLAYSPSS 402

Query: 191 G----AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSP---GYSPGYSPTSPSVGA 334
                +  Y+P SP Y  TSP        YSPS+P  + SSP   G SP YSP+SP    
Sbjct: 403 PRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFS- 461

Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGT 418
              P+ GY SP  PGY P+S +   P T
Sbjct: 462 ---PSTGY-SPSQPGYSPSSTSQYTPQT 485

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 57/160 (35%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
 Frame = +2

Query: 17  SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
           S+SP   S      A     +PG SP    +P  SP SP Y+  SP +           +
Sbjct: 342 SYSPTSPSYSPTSPAY-SPTSPGYSPT---SPSYSPTSPSYSPTSPSYNPQ--SAKYSPS 395

Query: 197 GAYAPASPAYMATSP----GMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAG 355
            AY+P+SP    +SP       YSP++P+ + +SP YSP    YSP+SP           
Sbjct: 396 LAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSP----------- 444

Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
           Y S  SP Y P+SP ++ P T       YSPS P YSP S
Sbjct: 445 YNSGVSPDYSPSSPQFS-PST------GYSPSQPGYSPSS 477

[139][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
            54-1255 RepID=B6H9U6_PENCW
          Length = 1733

 Score =  101 bits (251), Expect = 4e-20
 Identities = 64/173 (36%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPG---RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            T+  SP  S + +    +PG     +PG SPA   +P   P SP Y+  SP +G      
Sbjct: 1568 TSPTSPGYSPSSSYSPTSPGIGMMTSPGFSPA---SPTFQPTSPAYSPTSPAYGQASPTS 1624

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG---- 340
            P+     Y+P SP +  TSP   YSP++P+ + +SP +SP    YSPTSP++G       
Sbjct: 1625 PS-----YSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGARHLSP 1677

Query: 341  -GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
              P +   +P SPG+ PTSP    P +   + +  SP+SPAYSP SP Y+  S
Sbjct: 1678 TSPTSPKYTPTSPGWSPTSPQSYSPTSPNFSGSPTSPTSPAYSPTSPAYSPTS 1730

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 66/181 (36%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGR-SPAGRFTPRMSPASPGYAAMS------PRFGGG 169
            T   +   ++    G  +P   +PG  SP   F    SP SPGY+  S      P  G  
Sbjct: 1534 TGGLTEYQATTSTFGGFSPAARSPGGYSPTSPFNT--SPTSPGYSPSSSYSPTSPGIGMM 1591

Query: 170  LGGGPAGGAGAYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
               G +  +  + P SPAY  TSP  G  SP++P+ + +SPG+SP    YSPTSPS    
Sbjct: 1592 TSPGFSPASPTFQPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFS-- 1649

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
              PA+   SP SP Y PTSPA      +       SP+SP Y+P SP ++  S  +Y P 
Sbjct: 1650 --PASPAFSPTSPSYSPTSPAIGGARHLSPT----SPTSPKYTPTSPGWSPTSPQSYSPT 1703

Query: 518  S 520
            S
Sbjct: 1704 S 1704

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 71/183 (38%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTP----GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            SP+ SS   AG       +P    G+ P G  T         Y A +  FGG        
Sbjct: 1506 SPMASSPYMAGGDPNSTFSPMHQIGQEPTGGLTE--------YQATTSTFGG-------- 1549

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPA-LAVSSPGYSPG--YSPTSPSVGARGGPAAGYA 361
                ++PA     A SPG GYSP++P   + +SPGYSP   YSPTSP +G    P    A
Sbjct: 1550 ----FSPA-----ARSPG-GYSPTSPFNTSPTSPGYSPSSSYSPTSPGIGMMTSPGFSPA 1599

Query: 362  SPQ----SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQ 511
            SP     SP Y PTSPAY   G     +  YSP+SP +SP SPNY+  S      SPA+ 
Sbjct: 1600 SPTFQPTSPAYSPTSPAY---GQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFS 1656

Query: 512  PPS 520
            P S
Sbjct: 1657 PTS 1659

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 13/138 (9%)
 Frame = +2

Query: 23   SPIMS-SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            SP  S ++ A G+A+P   +P  SP    +P  SP SP Y+  SP F       PA  + 
Sbjct: 1607 SPAYSPTSPAYGQASP--TSPSYSPT---SPGFSPTSPNYSPTSPSFS------PA--SP 1653

Query: 200  AYAPASPAYMATSPGMG-------YSPSTPALAVSSPGYSP----GYSPTSPSV-GARGG 343
            A++P SP+Y  TSP +G        SP++P    +SPG+SP     YSPTSP+  G+   
Sbjct: 1654 AFSPTSPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPGWSPTSPQSYSPTSPNFSGSPTS 1713

Query: 344  PAAGYASPQSPGYVPTSP 397
            P +   SP SP Y PTSP
Sbjct: 1714 PTSPAYSPTSPAYSPTSP 1731

[140][TOP]
>UniRef100_Q6CL79 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
            RepID=Q6CL79_KLULA
          Length = 1720

 Score =  100 bits (250), Expect = 5e-20
 Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1568 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1614

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 1615 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYS------P 1664

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1665 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1694

 Score =  100 bits (249), Expect = 6e-20
 Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
 Frame = +2

Query: 107  TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
            +P  SP SPGY+  SP               +Y+P SP+Y  TSP   YSP++P+ + +S
Sbjct: 1540 SPGFSPTSPGYSPTSP---------------SYSPTSPSYSPTSP--SYSPTSPSYSPTS 1582

Query: 287  PGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSS 454
            P Y   SP YSPTSPS      P +   SP SP Y PTSP+Y+      +  +  YSP+S
Sbjct: 1583 PSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638

Query: 455  PAYSPFSPNYAAASSPAYQPPS 520
            P+YSP SP+Y + +SP+Y P S
Sbjct: 1639 PSYSPTSPSY-SPTSPSYSPTS 1659

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 68/171 (39%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            FSP++ S  A   A  G    G +  G  T   S    G    SP FG     G +  + 
Sbjct: 1492 FSPLVESGGADALAG-GFTAYGGADYGSATSPFS--GYGNGPTSPGFGEVSSPGFSPTSP 1548

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
             Y+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P +   SP 
Sbjct: 1549 GYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT 1602

Query: 371  SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1603 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1652

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1575 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1621

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 1622 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1677

Query: 428  AANV-YSPSSPAYSPFSPNYAAAS-SPA 505
              +  YSP+SP+YSP SP Y+  S SPA
Sbjct: 1678 PTSPSYSPTSPSYSPTSPQYSPGSYSPA 1705

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1610 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1656

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
            P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y P S + A P
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPQYSPGSYSPAEP 1707

[141][TOP]
>UniRef100_O94231 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kluyveromyces
           lactis RepID=O94231_KLULA
          Length = 414

 Score =  100 bits (250), Expect = 5e-20
 Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 262 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 308

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
           P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+       
Sbjct: 309 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYS------P 358

Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 359 TSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 388

 Score =  100 bits (249), Expect = 6e-20
 Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
           +P  SP SPGY+  SP               +Y+P SP+Y  TSP   YSP++P+ + +S
Sbjct: 234 SPGFSPTSPGYSPTSP---------------SYSPTSPSYSPTSP--SYSPTSPSYSPTS 276

Query: 287 PGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSS 454
           P Y   SP YSPTSPS      P +   SP SP Y PTSP+Y+      +  +  YSP+S
Sbjct: 277 PSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 332

Query: 455 PAYSPFSPNYAAASSPAYQPPS 520
           P+YSP SP+Y + +SP+Y P S
Sbjct: 333 PSYSPTSPSY-SPTSPSYSPTS 353

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 68/171 (39%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
 Frame = +2

Query: 20  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
           FSP++ S  A   A  G    G +  G  T   S    G    SP FG     G +  + 
Sbjct: 186 FSPLVESGGADALAG-GFTAYGGADYGSATSPFS--GYGNGPTSPGFGEVSSPGFSPTSP 242

Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQ 370
            Y+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS      P +   SP 
Sbjct: 243 GYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT 296

Query: 371 SPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           SP Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 297 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 346

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 269 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 315

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
           P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+      +
Sbjct: 316 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYS 371

Query: 428 AANV-YSPSSPAYSPFSPNYAAAS-SPA 505
             +  YSP+SP+YSP SP Y+  S SPA
Sbjct: 372 PTSPSYSPTSPSYSPTSPQYSPGSYSPA 399

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 304 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 350

Query: 257 PSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
           P++P+ + +SP YSP    YSPTSPS      P +   SP SP Y P S + A P
Sbjct: 351 PTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPQYSPGSYSPAEP 401

[142][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4PY98_DROYA
          Length = 1889

 Score =  100 bits (249), Expect = 6e-20
 Identities = 69/201 (34%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP YA+ SPR+        
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASASPRYASTTPNFN 1627

Query: 179  ----GPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGY 295
                G +  +  Y+P SP Y  T                 SPG  YSPS+   + +SP Y
Sbjct: 1628 PQSTGYSPSSSGYSPTSPVYSPTPNFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSY 1687

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPHYSPASP 1747

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1748 AYSQTGVKY-SPTSPTYSPPS 1767

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      + 
Sbjct: 1726 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1774

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
            G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P   
Sbjct: 1775 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1832

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1833 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 62/161 (38%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
                +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609

Query: 395  PAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQP 514
            P YA      A+    ++P S  YSP S  Y + +SP Y P
Sbjct: 1610 PLYASASPRYASTTPNFNPQSTGYSPSSSGY-SPTSPVYSP 1649

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            +SP  + + ++   +P   +P  SP    +P  SP+SP Y+  SP +        +  + 
Sbjct: 1667 YSPGNAYSPSSSNYSPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1720

Query: 200  AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
             Y P +P+Y  TSP       YSP++PA + +   YSP    YSP SPS     G     
Sbjct: 1721 NYTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1780

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
            P +   SP SP Y PTSP Y+      + +N YSP+   YS  SP Y+      + SS  
Sbjct: 1781 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1840

Query: 506  YQPPS 520
            Y P S
Sbjct: 1841 YSPTS 1845

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884

[143][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4L732_DROMO
          Length = 1889

 Score =  100 bits (249), Expect = 6e-20
 Identities = 69/201 (34%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP YA+ SPR+        
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASTSPRYASTTPNFN 1627

Query: 179  ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
                G +  +  Y+P SP Y  TS                 PG  YSPS+   + +SP Y
Sbjct: 1628 PQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSY 1687

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1688 SPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPHYSPASP 1747

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1748 AYSQTGVKY-SPTSPTYSPPS 1767

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      + 
Sbjct: 1726 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1774

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
            G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P   
Sbjct: 1775 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1832

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1833 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 64/163 (39%), Positives = 81/163 (49%), Gaps = 7/163 (4%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P     TPR    S   +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCHTPRYFSPSGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
                +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609

Query: 395  PAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P YA      A+    ++P S  YSP S  Y + +SP Y P S
Sbjct: 1610 PLYASTSPRYASTTPNFNPQSTGYSPSSSGY-SPTSPVYSPTS 1651

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 59/167 (35%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
 Frame = +2

Query: 74   MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG- 250
            M+P  SP+   +P  SP SP Y+  SP +        +  +  Y P +P+Y  TSP    
Sbjct: 1690 MSPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTSPNYTPVTPSYSPTSPNYSA 1738

Query: 251  ---YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG-----PAAGYASPQSPGYVPTSP 397
               YSP++PA + +   YSP    YSP SPS     G     P +   SP SP Y PTSP
Sbjct: 1739 SPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSP 1798

Query: 398  AYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
             Y+      + +N YSP+   YS  SP Y+      + SS  Y P S
Sbjct: 1799 LYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884

[144][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=Q5WMZ9_ORYSJ
          Length = 1741

 Score =  100 bits (248), Expect = 8e-20
 Identities = 65/172 (37%), Positives = 84/172 (48%), Gaps = 6/172 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG---GPAGG 193
            SPI S    +   T    +P        +   SP SP Y   SP +          P   
Sbjct: 1569 SPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSP 1628

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            + +Y+P SP+Y  TSP   YSP++P+ + +SP Y   SP YSPTSPS            S
Sbjct: 1629 SYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-----------S 1677

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTS AY+        +  YSP+SP YSP SP+Y + SSP+Y P S
Sbjct: 1678 PTSPSYSPTSSAYS------PTSPAYSPTSPGYSPTSPSY-SPSSPSYNPSS 1722

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 78/245 (31%), Positives = 103/245 (42%), Gaps = 74/245 (30%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTP----GRSPA--------GRFTPRM----------- 118
            A A FSP +     +  ++PG  TP    G SP+        G FT              
Sbjct: 1472 ADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSP 1531

Query: 119  --------------------SPASPGYAAMSPRFG--------GGLGGGPAG-------- 190
                                SP SP Y+A SP +           L   P          
Sbjct: 1532 ASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSP 1591

Query: 191  ----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY-----SPGYSPTSPS-----V 328
                 + AY+P SP+Y  TSP   YSP++P+ + +SP Y     SP YSPTSPS      
Sbjct: 1592 VYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPT 1651

Query: 329  GARGGPAAGYASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                 P +   SP SP Y PTSP+Y+    +    ++ YSP+SPAYSP SP Y + +SP+
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGY-SPTSPS 1710

Query: 506  YQPPS 520
            Y P S
Sbjct: 1711 YSPSS 1715

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 62/176 (35%), Positives = 84/176 (47%), Gaps = 22/176 (12%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRM------------SPASPGYAAMSPRFGG 166
            SP+ +   +A   T     P  SP+  ++P              SP SP Y+  SP +  
Sbjct: 1590 SPVYNPTSSAYSPTSPSYNP-TSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNY 1648

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP----------GYSPT 316
                  +  + +Y+P SP+Y  TSP   YSP++P+ + +SP YSP           YSPT
Sbjct: 1649 ------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPT 1700

Query: 317  SPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNY 484
            SP          GY SP SP Y P+SP+Y  P +V      Y+PS  AYSP SPNY
Sbjct: 1701 SP----------GY-SPTSPSYSPSSPSY-NPSSV-----KYTPSH-AYSPSSPNY 1738

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 58/176 (32%), Positives = 79/176 (44%), Gaps = 6/176 (3%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T++ SPI  +    G  +P  +    SP  R +P  + A       SP + GG+   P  
Sbjct: 1439 TSACSPISGTPYHQGMMSPSYLL---SPDIRASPTAADAQ-----FSP-YVGGMAFSPVS 1489

Query: 191  GAGAYAPAS-----PAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAG 355
              G Y P+S     P+    +PG G   S+      SP YSP    + P       P + 
Sbjct: 1490 SPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSL 1549

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP SP Y  TSP Y+    + +  ++ YSP+SP YSP SP Y   SS AY P S
Sbjct: 1550 PHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSS-AYSPTS 1604

[145][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MQ29_DROAN
          Length = 1889

 Score =  100 bits (248), Expect = 8e-20
 Identities = 69/201 (34%), Positives = 95/201 (47%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP YA  SPR+        
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYATTSPRYASTTPNFN 1627

Query: 179  ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
                G +  +  Y+P SP Y  TS                 PG  YSPS+   + +SP Y
Sbjct: 1628 PQSTGYSPSSSGYSPTSPVYSPTSNYQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSY 1687

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPHYSPASP 1747

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1748 AYSQTGVKY-SPTSPTYSPPS 1767

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      + 
Sbjct: 1726 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1774

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
            G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P   
Sbjct: 1775 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1832

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1833 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 63/163 (38%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
                +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609

Query: 395  PAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P YA      A+    ++P S  YSP S  Y + +SP Y P S
Sbjct: 1610 PLYATTSPRYASTTPNFNPQSTGYSPSSSGY-SPTSPVYSPTS 1651

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            +SP  + + ++   +P   +P  SP    +P  SP+SP Y+  SP +        +  + 
Sbjct: 1667 YSPGNAYSPSSSNYSPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1720

Query: 200  AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
             Y P +P+Y  TSP       YSP++PA + +   YSP    YSP SPS     G     
Sbjct: 1721 NYTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1780

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
            P +   SP SP Y PTSP Y+      + +N YSP+   YS  SP Y+      + SS  
Sbjct: 1781 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1840

Query: 506  YQPPS 520
            Y P S
Sbjct: 1841 YSPTS 1845

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884

[146][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 74/190 (38%), Positives = 92/190 (48%), Gaps = 23/190 (12%)
 Frame = +2

Query: 20   FSPIMSS--ADAAGRATP---GRMTPGRSPAGRFTPRMSPASPG----YAAMSPRFGGGL 172
            FSP  +S   DAA   TP      +P  + A  F    SP S      Y+  SP   GG+
Sbjct: 1534 FSPFAASPYGDAAFSPTPTSPAYASPYGTAASPFNAMASPYSRAGNAFYSPRSPSSPGGV 1593

Query: 173  GGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGG 343
               P      Y+P SP Y  TSP   YSP++P+ + +SP YSP    YSPTSP+      
Sbjct: 1594 AASPG-----YSPTSPTYSPTSPS--YSPTSPSYSPTSPAYSPTSPAYSPTSPTYS---- 1642

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANV-----------YSPSSPAYSPFSPNYAA 490
            P +   SP SP Y PTSP Y+     ++ A             YSPSSP YSP SP+Y +
Sbjct: 1643 PTSPTYSPTSPTYSPTSPMYSPSSPAMSPARAGGVSYSPSSPHYSPSSPQYSPSSPHY-S 1701

Query: 491  ASSPAYQPPS 520
             SSP Y P S
Sbjct: 1702 PSSPHYSPSS 1711

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 27/200 (13%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRA--------TPGRM--TPGRSPAGRFTPRMSPASPGYAAMSPR 157
            A + F+ + S    AG A        +PG +  +PG SP    +P  SP SP Y+  SP 
Sbjct: 1563 AASPFNAMASPYSRAGNAFYSPRSPSSPGGVAASPGYSPT---SPTYSPTSPSYSPTSPS 1619

Query: 158  FGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSV 328
            +        +  + AY+P SPAY  TSP   YSP++P  + +SP YSP    YSP+SP++
Sbjct: 1620 Y--------SPTSPAYSPTSPAYSPTSPT--YSPTSPTYSPTSPTYSPTSPMYSPSSPAM 1669

Query: 329  G-ARGG-----PAAGYASPQSPGYVPTSPAYARPGTVVAAANV--------YSPSSPAYS 466
              AR G     P++ + SP SP Y P+SP Y+      + ++         YSPSSPAYS
Sbjct: 1670 SPARAGGVSYSPSSPHYSPSSPQYSPSSPHYSPSSPHYSPSSPQYSPSSPQYSPSSPAYS 1729

Query: 467  PFSPNYAAASSPAYQPPSRR 526
            P SP Y + SSPA+  PS R
Sbjct: 1730 PSSPAY-SPSSPAH--PSTR 1746

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 53/167 (31%), Positives = 65/167 (38%), Gaps = 29/167 (17%)
 Frame = +2

Query: 107  TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
            TPR    SP +   +PR         A  AG+  P               P+TP  A  S
Sbjct: 1488 TPRAGLMSPAHGFDTPR---------AFDAGSMTPY--------------PATPGQATPS 1524

Query: 287  PGYSPGYSPTSPSVGARGGPAAGYASPQSPGY-----VPTSP------AYARPGTV---- 421
              Y+P     SP   +  G AA   +P SP Y        SP       Y+R G      
Sbjct: 1525 YPYTPIGGQFSPFAASPYGDAAFSPTPTSPAYASPYGTAASPFNAMASPYSRAGNAFYSP 1584

Query: 422  --------VAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
                    VAA+  YSP+SP YSP SP+Y+  S      SPAY P S
Sbjct: 1585 RSPSSPGGVAASPGYSPTSPTYSPTSPSYSPTSPSYSPTSPAYSPTS 1631

[147][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
            RepID=Q0D054_ASPTN
          Length = 1742

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 64/170 (37%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            ++S+SP   ++   G  +P   +PG SPA   +P   P SP Y+  SP +G      P+ 
Sbjct: 1584 SSSYSP---TSPGMGITSPRMTSPGFSPA---SPAFGPTSPAYSPTSPAYGQASPTSPS- 1636

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGG-----P 346
                Y+P SP +  TSP   YSP++P L+ +SP +SP    YSPTSP++GA        P
Sbjct: 1637 ----YSPTSPGFSPTSPN--YSPTSPNLSPASPVFSPTSPSYSPTSPALGAGRNMSPTSP 1690

Query: 347  AAGYASPQSPGYVPTSPAYARP------GTVVAAANVYSPSSPAYSPFSP 478
             +   +P SPG+ PTSP    P      G+  +    YSP+SP YSP SP
Sbjct: 1691 TSPKYTPTSPGWSPTSPQSYSPTSPNIGGSPTSPGGAYSPTSPTYSPTSP 1740

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 70/195 (35%), Positives = 94/195 (48%), Gaps = 26/195 (13%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMT---PGRSPAGRFTPRMSPASP-GYAAMSPRFGGGLGGG 181
            ++FSPI      AG  +PG  T   P     G F+P  +P SP GY+  SP F GG    
Sbjct: 1527 SNFSPIRQ----AGAESPGGFTEYQPTAGFGGGFSP--APTSPLGYSPGSP-FSGGATSP 1579

Query: 182  PAGGAGAYAPASPAYMATSPGM---GYSPSTPALAVSSPGYSP-------------GYSP 313
                + +Y+P SP    TSP M   G+SP++PA   +SP YSP              YSP
Sbjct: 1580 SYSPSSSYSPTSPGMGITSPRMTSPGFSPASPAFGPTSPAYSPTSPAYGQASPTSPSYSP 1639

Query: 314  TSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAA---NVYSPSSPAYSPFS 475
            TSP          P +   SP SP + PTSP+Y+     + A    +  SP+SP Y+P S
Sbjct: 1640 TSPGFSPTSPNYSPTSPNLSPASPVFSPTSPSYSPTSPALGAGRNMSPTSPTSPKYTPTS 1699

Query: 476  PNYAAASSPAYQPPS 520
            P ++  S  +Y P S
Sbjct: 1700 PGWSPTSPQSYSPTS 1714

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 66/171 (38%), Positives = 89/171 (52%), Gaps = 10/171 (5%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATP---GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            FSP  +S       +P   G  +P  SP+  +    SP SPG    SPR     G  PA 
Sbjct: 1556 FSPAPTSPLGYSPGSPFSGGATSPSYSPSSSY----SPTSPGMGITSPRMTSP-GFSPA- 1609

Query: 191  GAGAYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGY 358
             + A+ P SPAY  TSP  G  SP++P+ + +SPG+SP    YSPTSP++     PA+  
Sbjct: 1610 -SPAFGPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPNLS----PASPV 1664

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANV---YSPSSPAYSPFSPNYAAASSP 502
             SP SP Y PTSPA      +   +     Y+P+SP +SP SP   + +SP
Sbjct: 1665 FSPTSPSYSPTSPALGAGRNMSPTSPTSPKYTPTSPGWSPTSPQSYSPTSP 1715

[148][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
            RepID=B4MAN9_DROVI
          Length = 1889

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 68/176 (38%), Positives = 89/176 (50%), Gaps = 5/176 (2%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            AT S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      +
Sbjct: 1725 ATPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------S 1773

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAA 352
             G+  Y P SP Y  TSP   YSP++P  + SSP +SP   YSPT  +  A   R  P  
Sbjct: 1774 PGSPQYTPGSPQYSPTSPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1832 SIYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 68/201 (33%), Positives = 94/201 (46%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP Y A S R+        
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYTATSLRYASATPNFN 1627

Query: 179  ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
                G +  +  Y+P SP Y  TS                 PG  YSPS+   + +SP Y
Sbjct: 1628 PQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSSNSPSY 1687

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1688 SPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASPHYSPASP 1747

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1748 AYSQTGVKY-SPTSPTYSPPS 1767

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 64/186 (34%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            ++SP  SS  ++   +   M+P  SP+   +P  SP SP Y+  SP +        +  +
Sbjct: 1672 AYSP-SSSNYSSNSPSYSPMSPSYSPS---SPSYSPTSPCYSPTSPSY--------SPTS 1719

Query: 197  GAYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG---- 343
              Y PA+P+Y  TSP       YSP++PA + +   YSP    YSP SPS     G    
Sbjct: 1720 PNYTPATPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQY 1779

Query: 344  -PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSP 502
             P +   SP SP Y PTSP Y+      + +N YSP+   YS  SP Y+      + SS 
Sbjct: 1780 TPGSPQYSPTSPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSST 1839

Query: 503  AYQPPS 520
             Y P S
Sbjct: 1840 KYSPTS 1845

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 60/164 (36%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
 Frame = +2

Query: 68   GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA----------GGAGAYAPAS 217
            G  TP  +P    TP ++  +P Y + S    G   GGP+          G + +++PA 
Sbjct: 1496 GGSTPSMTPP--MTPWVNCHTPRYFSPSGHVSGMTPGGPSFSPSAASDASGMSPSWSPAH 1553

Query: 218  PAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPT 391
            P    +SPG   SP       +SP  SP YSPTSP+  A   GG +  Y SP SP Y PT
Sbjct: 1554 PGSSPSSPGPSMSPHFS----TSPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPT 1608

Query: 392  SPAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y       A+A   ++P S  YSP S  Y + +SP Y P S
Sbjct: 1609 SPLYTATSLRYASATPNFNPQSTGYSPSSSGY-SPTSPVYSPTS 1651

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 48/133 (36%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPG--RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SP  S    +   +PG  + TPG       +P+ SP SP Y+  SP+        P G  
Sbjct: 1760 SPTYSPPSPSYDGSPGSPQYTPGSPQYSPTSPKYSPTSPLYSPSSPQHSPSNQYSPTGST 1819

Query: 197  GAYAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
              Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + S
Sbjct: 1820 --YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYS 1871

Query: 365  PQSPGYVPTSPAY 403
            P SP Y P+SP +
Sbjct: 1872 PTSPAYSPSSPTF 1884

[149][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4NDK9_DROWI
          Length = 1890

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 69/201 (34%), Positives = 94/201 (46%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP  +S +    +  G  +P  SP+   +P  SP SP YAA SPR+        
Sbjct: 1574 SVSPSYSP--TSPNYTASSPSGGASPNYSPS---SPNYSPTSPLYAATSPRYASTTPNFN 1628

Query: 179  ----GPAGGAGAYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
                G +  +  Y+P SP Y  TS                 PG  YSPS+     +SP Y
Sbjct: 1629 LQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYTPNSPSY 1688

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1689 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPHYSPASP 1748

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1749 AYSQTGVKY-SPTSPTYSPPS 1768

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      + 
Sbjct: 1727 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1775

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
            G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P   
Sbjct: 1776 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1833

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1834 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1882

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 62/185 (33%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            +SP  + + ++   TP   +P  SP    +P  SP+SP Y+  SP +        +  + 
Sbjct: 1668 YSPGNAYSPSSSNYTPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1721

Query: 200  AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
             Y P +P+Y  TSP       YSP++PA + +   YSP    YSP SPS     G     
Sbjct: 1722 NYTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1781

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
            P +   SP SP Y PTSP Y+      + +N YSP+   YS  SP Y+      + SS  
Sbjct: 1782 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1841

Query: 506  YQPPS 520
            Y P S
Sbjct: 1842 YSPTS 1846

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 66/172 (38%), Positives = 85/172 (49%), Gaps = 6/172 (3%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SFSP  +S DA+G      M+P  SPA    P  SP+SPG  +MSP F       P+   
Sbjct: 1533 SFSPAAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPTSPSVSPS--- 1578

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
              Y+P SP Y A+SP  G SP+       SP  SP YSPTSP   A            SP
Sbjct: 1579 --YSPTSPNYTASSPSGGASPNY------SPS-SPNYSPTSPLYAAT-----------SP 1618

Query: 377  GYVPTSPAYARPGTVVA-AANVYSPSSPAYSP-----FSPNYAAASSPAYQP 514
             Y  T+P +    T  + +++ YSP+SP YSP      SP++A + S  Y P
Sbjct: 1619 RYASTTPNFNLQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSP 1670

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 60/146 (41%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
 Frame = +2

Query: 98   GRFTPRMSPA-SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--ATSPGMGYSPS-T 265
            G  TP M+P  +P     +PR+       P G A +  P  P++   A S   G SPS +
Sbjct: 1496 GGSTPSMTPPMTPWVNCNTPRYFS-----PQGHASSMTPGGPSFSPAAASDASGMSPSWS 1550

Query: 266  PALAVSSPGYSPG-----YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
            PA   SSP  SPG     Y PTSPSV              SP Y PTSP Y        A
Sbjct: 1551 PAHPGSSPS-SPGPSMSPYFPTSPSV--------------SPSYSPTSPNYTASSPSGGA 1595

Query: 431  ANVYSPSSPAYSPFSPNYAAASSPAY 508
            +  YSPSSP YSP SP Y AA+SP Y
Sbjct: 1596 SPNYSPSSPNYSPTSPLY-AATSPRY 1620

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1768 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1820

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1821 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1874

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1875 SPAYSPSSPTF 1885

[150][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
            Pt-1C-BFP RepID=B2W4S0_PYRTR
          Length = 1742

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 77/196 (39%), Positives = 94/196 (47%), Gaps = 26/196 (13%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTP--GRSPAGRFTPR---MSPASPGYAAMSPRFGGGLGGG 181
            SFSP+   A A G    G  T   G   +G F+P     SP   G+  MSP F   +  G
Sbjct: 1520 SFSPM---AAAGGGDDQGGFTAYGGSYGSGGFSPYDGGRSPGGSGFTGMSPGFTSPVSPG 1576

Query: 182  PAGGAGAYAP-----ASPAYMATSPGMGYSPSTPALAVSSPGY----SPGYSPTSPSVGA 334
             +  +  Y+P     ASP + ATSPG   SP++P  + +SP Y    SP YSPTSP   A
Sbjct: 1577 FSPTSPGYSPTSPGTASPRFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPTSP---A 1633

Query: 335  RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANV---YSPSSPAYSPFSPNYAAAS--- 496
               P +   SP SP Y PTSP +    T  A +     YSP+SP YSP SP Y A S   
Sbjct: 1634 GYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQATSDRR 1693

Query: 497  ------SPAYQPPSRR 526
                  SP Y P S R
Sbjct: 1694 SPTSPTSPQYSPTSPR 1709

 Score = 90.5 bits (223), Expect = 6e-17
 Identities = 74/193 (38%), Positives = 90/193 (46%), Gaps = 23/193 (11%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPG-RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            +  FSP        G    G M+PG  SP    +P  SP SPGY+  SP          +
Sbjct: 1545 SGGFSPYDGGRSPGGSGFTG-MSPGFTSPV---SPGFSPTSPGYSPTSPGTASPRFAATS 1600

Query: 188  GGAGAYAPASPAYMATSPGMG------YSPSTPA-LAVSSPGYSP---GYSPTSPSVGAR 337
             G  A +P SP Y  TSP  G      YSP++PA  + +SP YSP    YSPTSP+    
Sbjct: 1601 PGYMA-SPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTF--M 1657

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN----VYSPSSPAYSPFSPNYAAAS--- 496
            GG  +   SP SP Y PTSP Y+       A +      SP+SP YSP SP Y+  S   
Sbjct: 1658 GGATSPAYSPTSPQYSPTSPQYSPTSPQYQATSDRRSPTSPTSPQYSPTSPRYSPTSPAG 1717

Query: 497  -----SPAYQPPS 520
                 SP Y P S
Sbjct: 1718 SFSPTSPRYSPTS 1730

 Score = 87.4 bits (215), Expect = 5e-16
 Identities = 68/173 (39%), Positives = 81/173 (46%), Gaps = 25/173 (14%)
 Frame = +2

Query: 77   TPGRSPA--GRFTPRMSPASPGYAAM---------SPRFGGGLGGG--PAGGAGAYAPAS 217
            +PG SP   G  +PR +  SPGY A          SPR+G        P   AG Y+P S
Sbjct: 1581 SPGYSPTSPGTASPRFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPTSPAG-YSPTS 1639

Query: 218  PAYMATSPGMGYSPSTPAL--AVSSPGYSPG----------YSPTSPSVGARGGPAAGYA 361
            P Y  TSP   YSP++P      +SP YSP           YSPTSP   A     +   
Sbjct: 1640 PQYSPTSPN--YSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQATSDRRSP-T 1696

Query: 362  SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP SP Y PTSP Y+      + A  +SP+SP YSP SP       PAY P S
Sbjct: 1697 SPTSPQYSPTSPRYSP----TSPAGSFSPTSPRYSPTSP------GPAYSPTS 1739

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 53/155 (34%), Positives = 66/155 (42%), Gaps = 31/155 (20%)
 Frame = +2

Query: 149  SPRFGGGLGGG---PAGGAGAYAPASPAYMATSPGMG-------YSPSTPA--------- 271
            S   GG  G G     G A  Y   SP Y     GMG       +SP   A         
Sbjct: 1478 SKMMGGAAGAGTYLSDGAATPYDLGSPTYEG-GMGMGGGYDQVSFSPMAAAGGGDDQGGF 1536

Query: 272  ----LAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGT----- 418
                 +  S G+SP     SP      G + G+ SP SPG+ PTSP Y+   PGT     
Sbjct: 1537 TAYGGSYGSGGFSPYDGGRSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRF 1596

Query: 419  -VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               +   + SP+SP YSP SP Y + +SP+Y P S
Sbjct: 1597 AATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPTS 1631

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 38/102 (37%), Positives = 50/102 (49%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            ++SP  +S    G AT    +P        +P+ SP SP Y A S R        P    
Sbjct: 1648 NYSP--TSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQATSDRRSPTSPTSPQ--- 1702

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSP 322
              Y+P SP Y  TSP   +SP++P  + +SPG  P YSPTSP
Sbjct: 1703 --YSPTSPRYSPTSPAGSFSPTSPRYSPTSPG--PAYSPTSP 1740

[151][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NUC1_DROER
          Length = 1889

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 68/201 (33%), Positives = 95/201 (47%), Gaps = 29/201 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP YA+ SPR+        
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASASPRYASTTPNFN 1627

Query: 179  ----GPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGY 295
                G +  +  Y+P SP Y  T                 SP   YSPS+   + +SP Y
Sbjct: 1628 PQSTGYSPSSSGYSPTSPVYSPTPHFQSSPSFAGSGSNIYSPANAYSPSSANYSPNSPSY 1687

Query: 296  SP---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
            SP    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SP
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPHYSPASP 1747

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
            AYS     Y + +SP Y PPS
Sbjct: 1748 AYSQTGVKY-SPTSPTYSPPS 1767

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      + 
Sbjct: 1726 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1774

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
            G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P   
Sbjct: 1775 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1832

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1833 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 63/161 (39%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P A   TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
                +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609

Query: 395  PAYARPGTVVAAANV-YSPSSPAYSPFSPNYAAASSPAYQP 514
            P YA      A+    ++P S  YSP S  Y + +SP Y P
Sbjct: 1610 PLYASASPRYASTTPNFNPQSTGYSPSSSGY-SPTSPVYSP 1649

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            +SP  + + ++   +P   +P  SP    +P  SP+SP Y+  SP +        +  + 
Sbjct: 1667 YSPANAYSPSSANYSPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1720

Query: 200  AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
             Y P +P+Y  TSP       YSP++PA + +   YSP    YSP SPS     G     
Sbjct: 1721 NYTPVTPSYSPTSPNYSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1780

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
            P +   SP SP Y PTSP Y+      + +N YSP+   YS  SP Y+      + SS  
Sbjct: 1781 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1840

Query: 506  YQPPS 520
            Y P S
Sbjct: 1841 YSPTS 1845

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884

[152][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179338A
          Length = 1862

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 66/171 (38%), Positives = 90/171 (52%), Gaps = 5/171 (2%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATP--GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            ++SP      A  + TP    M+P  +         SP SP Y+  SP +        + 
Sbjct: 1603 NYSPTSPQYSATQQNTPKYSSMSPNYN--------YSPTSPSYSPTSPSYSHT---SYSP 1651

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYA 361
             + +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   
Sbjct: 1652 TSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSY 1705

Query: 362  SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
            SP SP Y PTSP+Y+        +  YSP+SP+YSP SP Y  ASSP+Y P
Sbjct: 1706 SPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPSSPQY-TASSPSYTP 1749

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 73/187 (39%), Positives = 98/187 (52%), Gaps = 20/187 (10%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRM--SPASPGYAAMSPRFG-------GGL 172
            FSP  SS +A+G  +P  MT G +P    +P M  SP  P   +MSP +        G +
Sbjct: 1538 FSPAGSS-EASG-TSPFWMTSGGTPGSPGSPGMATSPYVPSPNSMSPNYNYPSSPQFGSM 1595

Query: 173  GGGPAGGAGAYAPASPAYMAT----------SPGMGYSPSTPALAVSSPGYS-PGYSPTS 319
               P+     Y+P SP Y AT          SP   YSP++P+ + +SP YS   YSPTS
Sbjct: 1596 S--PSMTPTNYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTS 1653

Query: 320  PSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
            PS      P +   SP SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +S
Sbjct: 1654 PSYS----PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTS 1702

Query: 500  PAYQPPS 520
            P+Y P S
Sbjct: 1703 PSYSPTS 1709

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 65/187 (34%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
 Frame = +2

Query: 11   TASFSPIMSSADAAG-----RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF---GG 166
            T S SP M+  D         +    +  G +P G   P  SPA    A+ +  F    G
Sbjct: 1501 TPSMSPAMTPWDQTSTPVYQNSWSSSLEAGMTPGG---PGFSPAGSSEASGTSPFWMTSG 1557

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP-GYSPTSPSVGARGG 343
            G  G P     A +P  P+  + SP   Y PS+P     SP  +P  YSPTSP   A   
Sbjct: 1558 GTPGSPGSPGMATSPYVPSPNSMSPNYNY-PSSPQFGSMSPSMTPTNYSPTSPQYSATQQ 1616

Query: 344  PAAGYA--------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
                Y+        SP SP Y PTSP+Y+       + + YSP+SP+YSP SP+Y + +S
Sbjct: 1617 NTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPS-YSPTSPSYSPTSPSY-SPTS 1674

Query: 500  PAYQPPS 520
            P+Y P S
Sbjct: 1675 PSYSPTS 1681

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 60/162 (37%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1688 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1734

Query: 257  PSTPALAVSSPGYSPG---------YSPTSPS--VGARGGPAAGYASPQSPGYVPTSPAY 403
            PS+P    SSP Y+P          YSPTSPS  V     P +   SP +  Y P+S  +
Sbjct: 1735 PSSPQYTASSPSYTPSATSGASNYKYSPTSPSLAVSPTYSPTSPMYSPSNASYSPSSVQH 1794

Query: 404  ARPGTVVAAANVYSPSSPAYSP-----FSPNYAAASSPAYQP 514
                 V      YSPSSP YSP      SP Y + +SP Y P
Sbjct: 1795 TPNAGVTQYNQSYSPSSPVYSPTNFSLASPRY-SPTSPTYSP 1835

 Score = 80.5 bits (197), Expect = 7e-14
 Identities = 66/171 (38%), Positives = 87/171 (50%), Gaps = 34/171 (19%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P+SP Y A+SP     
Sbjct: 1702 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPSSPQYTASSPSYTPS 1750

Query: 251  ---------YSPSTPALAVS------SPGYSPG---YSPTS----PSVGARG-----GPA 349
                     YSP++P+LAVS      SP YSP    YSP+S    P+ G         P+
Sbjct: 1751 ATSGASNYKYSPTSPSLAVSPTYSPTSPMYSPSNASYSPSSVQHTPNAGVTQYNQSYSPS 1810

Query: 350  AGYASPQ-----SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA 487
            +   SP      SP Y PTSP Y+ PG  V + N YSPSSP+YSP SPNY+
Sbjct: 1811 SPVYSPTNFSLASPRYSPTSPTYS-PG--VGSPN-YSPSSPSYSPTSPNYS 1857

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 54/148 (36%), Positives = 65/148 (43%), Gaps = 36/148 (24%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA----YAPASPA------Y 226
            +P  SP    +P  SP+SP Y A SP +       P+  +GA    Y+P SP+      Y
Sbjct: 1723 SPSYSPT---SPSYSPSSPQYTASSPSYT------PSATSGASNYKYSPTSPSLAVSPTY 1773

Query: 227  MATSP-----GMGYSPS----TPALAV---------SSPGYSPG--------YSPTSPSV 328
              TSP        YSPS    TP   V         SSP YSP         YSPTSP+ 
Sbjct: 1774 SPTSPMYSPSNASYSPSSVQHTPNAGVTQYNQSYSPSSPVYSPTNFSLASPRYSPTSPTY 1833

Query: 329  GARGGPAAGYASPQSPGYVPTSPAYARP 412
                G  +   SP SP Y PTSP Y+ P
Sbjct: 1834 SP--GVGSPNYSPSSPSYSPTSPNYSGP 1859

[153][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5Y387_SORBI
          Length = 1874

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 71/184 (38%), Positives = 96/184 (52%), Gaps = 13/184 (7%)
 Frame = +2

Query: 8    ATASFSPIMSSAD-AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            ++ SFSP  +S   +   A+    +P  SP    +P  SPAS  Y+  SP F        
Sbjct: 1646 SSPSFSPTSTSPSYSPASASYSPTSPFYSPT---SPSYSPASLSYSPTSP-FYSPTSPSY 1701

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAG 355
            +  + +Y+P SP Y  TSP   YSPS+P+ + +SP YSP   GYSPTSP       P + 
Sbjct: 1702 SPASLSYSPTSPFYSPTSPS--YSPSSPSYSPTSPTYSPTSLGYSPTSPGYS----PTSP 1755

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPS---------SPAYSPFSPNYAAASSPAY 508
              SP SP Y PTSP+Y    T   ++N YSP+         +P YSP SP Y + +SP+Y
Sbjct: 1756 TYSPTSPNYSPTSPSYNLSYTEYNSSNTYSPTRPRITLDSQAPDYSPTSPTY-SPTSPSY 1814

Query: 509  QPPS 520
              PS
Sbjct: 1815 SLPS 1818

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 32/198 (16%)
 Frame = +2

Query: 23   SPIMSSADAAG---RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP---RFGGGLGGGP 184
            SPI +  +AA     +T    TP        TP  +P SP Y+  +P   +        P
Sbjct: 1572 SPIYTPYNAASPVNASTSTSYTPVSPVYSPTTPVYTPMSPVYSPTTPVSSQIQSYSSASP 1631

Query: 185  -----AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--------------- 304
                 +  +  Y P+SP++  TS    YSP++ + + +SP YSP                
Sbjct: 1632 IYNPISPNSSRYNPSSPSFSPTSTSPSYSPASASYSPTSPFYSPTSPSYSPASLSYSPTS 1691

Query: 305  --YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYS 466
              YSPTSPS         P + + SP SP Y P+SP+Y+      +  ++ YSP+SP YS
Sbjct: 1692 PFYSPTSPSYSPASLSYSPTSPFYSPTSPSYSPSSPSYSPTSPTYSPTSLGYSPTSPGYS 1751

Query: 467  PFSPNYAAASSPAYQPPS 520
            P SP Y + +SP Y P S
Sbjct: 1752 PTSPTY-SPTSPNYSPTS 1768

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 50/146 (34%), Positives = 65/146 (44%), Gaps = 30/146 (20%)
 Frame = +2

Query: 107  TPRMSPASPGYAAMSPRFGG-GLGGGPAGG-----AGAYAPASPAYMATSPGMG------ 250
            +P  SP+SP Y+  SP +    LG  P        +  Y+P SP Y  TSP         
Sbjct: 1719 SPSYSPSSPSYSPTSPTYSPTSLGYSPTSPGYSPTSPTYSPTSPNYSPTSPSYNLSYTEY 1778

Query: 251  -----YSPSTPALAVSS--PGYSPG---YSPTSPSVGARGGPAAGYASPQ--------SP 376
                 YSP+ P + + S  P YSP    YSPTSPS      P+  Y+  +        SP
Sbjct: 1779 NSSNTYSPTRPRITLDSQAPDYSPTSPTYSPTSPSYSL---PSLSYSPNRPTDDSGRPSP 1835

Query: 377  GYVPTSPAYARPGTVVAAANVYSPSS 454
             Y PTSP ++   +    A  YSPSS
Sbjct: 1836 DYSPTSPNFSPNRSDSPTAADYSPSS 1861

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
 Frame = +2

Query: 137  YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP--GYS 310
            YA+ SP +   +   P    G Y+P   +    SP     P +      SP Y+P    S
Sbjct: 1528 YASFSP-YVRDMSLSPVPSQGGYSPIPRSESGYSP----IPRSVRYMAVSPIYTPYNAAS 1582

Query: 311  PTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAA 490
            P + S      P +   SP +P Y P SP Y+    V +    YS +SP Y+P SPN + 
Sbjct: 1583 PVNASTSTSYTPVSPVYSPTTPVYTPMSPVYSPTTPVSSQIQSYSSASPIYNPISPNSSR 1642

Query: 491  --ASSPAYQPPS 520
               SSP++ P S
Sbjct: 1643 YNPSSPSFSPTS 1654

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
 Frame = +2

Query: 164  GGLGGGPAGGAG-AYAPASPAYMATSP-GMGYSPSTPALAVSSPGY---SPGYSPTSPSV 328
            GG    P   +G +  P S  YMA SP    Y+ ++P  A +S  Y   SP YSPT+P  
Sbjct: 1547 GGYSPIPRSESGYSPIPRSVRYMAVSPIYTPYNAASPVNASTSTSYTPVSPVYSPTTPVY 1606

Query: 329  GARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP---AYSPFSPNYAAAS- 496
                       +P SP Y PT+P  ++  +  +A+ +Y+P SP    Y+P SP+++  S 
Sbjct: 1607 -----------TPMSPVYSPTTPVSSQIQSYSSASPIYNPISPNSSRYNPSSPSFSPTST 1655

Query: 497  SPAYQPPS 520
            SP+Y P S
Sbjct: 1656 SPSYSPAS 1663

[154][TOP]
>UniRef100_B4R347 RNA polymerase II 215kD subunit n=1 Tax=Drosophila simulans
           RepID=B4R347_DROSI
          Length = 552

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 70/200 (35%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
 Frame = +2

Query: 5   NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP-----ASPGYAAMSPRFGGG 169
           + + S+SP   +  A+   +PG  +P  SP+   +P  SP     ASP YA+ +P F   
Sbjct: 239 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASPRYASTTPNFNPQ 292

Query: 170 LGGGPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGYS 298
             G     +G Y+P SP Y  T                 SPG  YSPS+   + +SP YS
Sbjct: 293 STGYSPSSSG-YSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYS 351

Query: 299 P---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
           P    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SPA
Sbjct: 352 PTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPA 411

Query: 461 YSPFSPNYAAASSPAYQPPS 520
           YS     Y + +SP Y PPS
Sbjct: 412 YSQTGVKY-SPTSPTYSPPS 430

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 24/192 (12%)
 Frame = +2

Query: 17  SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
           SFSP  +S DA+G      M+P  SPA    P  SP+SPG  +MSP F       P+   
Sbjct: 198 SFSPSAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS--- 243

Query: 197 GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGY-SPGYSPTSPSVGARGGPAAGYAS 364
             Y+P SP Y A+SPG     YSPS+P  + +SP Y SP Y+ T+P+   +   + GY S
Sbjct: 244 --YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQ---STGY-S 297

Query: 365 PQSPGYVPTSPAYA-------------------RPGTVVA-AANVYSPSSPAYSPFSPNY 484
           P S GY PTSP Y+                    PG   + +++ YSP+SP+YSP SP+Y
Sbjct: 298 PSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSY 357

Query: 485 AAASSPAYQPPS 520
            + SSP+Y P S
Sbjct: 358 -SPSSPSYSPTS 368

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
           T S+SP   +  A+ + +P   +P  S  G    + SP SP Y+  SP + G      + 
Sbjct: 389 TPSYSPTSPNYSASPQYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 437

Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
           G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P   
Sbjct: 438 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 495

Query: 356 YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             SP S  Y PTSP Y         A  YSP+SP YSP +P++ +  SPAY P S
Sbjct: 496 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPKSPAYSPSS 544

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 66/168 (39%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
 Frame = +2

Query: 53  GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
           G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 161 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 219

Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
               +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 220 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 274

Query: 395 PAYARPGTVVAAANV------YSPSSPAYSPFSPNYAAA----SSPAY 508
           P YA P       N       YSPSS  YSP SP Y+      SSP++
Sbjct: 275 PLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGYSPTAQFQSSPSF 322

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 66/206 (32%), Positives = 87/206 (42%), Gaps = 36/206 (17%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRA-TPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
           TA F    S A +     +PG   +P  S     +P  SP SP Y+  SP +        
Sbjct: 313 TAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSY-------- 364

Query: 185 AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---------------------- 298
           +  +  Y+P SP+Y  TSP   Y+P TP+ + +SP YS                      
Sbjct: 365 SPTSPCYSPTSPSYSPTSPN--YTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPT 422

Query: 299 -PGYSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
            P YSP SPS     G     P +   SP SP Y PTSP Y+      + +N YSP+   
Sbjct: 423 SPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGST 482

Query: 461 YSPFSPNYA------AASSPAYQPPS 520
           YS  SP Y+      + SS  Y P S
Sbjct: 483 YSATSPRYSPNMSIYSPSSTKYSPTS 508

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 49/131 (37%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 430 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 482

Query: 203 YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
           Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP+
Sbjct: 483 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPK 536

Query: 371 SPGYVPTSPAY 403
           SP Y P+SP +
Sbjct: 537 SPAYSPSSPTF 547

[155][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4IK28_DROSE
          Length = 1887

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 70/200 (35%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP-----ASPGYAAMSPRFGGG 169
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP     ASP YA+ +P F   
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASPRYASTTPNFNPQ 1627

Query: 170  LGGGPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGYS 298
              G     +G Y+P SP Y  T                 SPG  YSPS+   + +SP YS
Sbjct: 1628 STGYSPSSSG-YSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYS 1686

Query: 299  P---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
            P    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SPA
Sbjct: 1687 PTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPA 1746

Query: 461  YSPFSPNYAAASSPAYQPPS 520
            YS     Y + +SP Y PPS
Sbjct: 1747 YSQTGVKY-SPTSPTYSPPS 1765

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 24/192 (12%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SFSP  +S DA+G      M+P  SPA    P  SP+SPG  +MSP F       P+   
Sbjct: 1533 SFSPSAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS--- 1578

Query: 197  GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGY-SPGYSPTSPSVGARGGPAAGYAS 364
              Y+P SP Y A+SPG     YSPS+P  + +SP Y SP Y+ T+P+   +   + GY S
Sbjct: 1579 --YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQ---STGY-S 1632

Query: 365  PQSPGYVPTSPAYA-------------------RPGTVVA-AANVYSPSSPAYSPFSPNY 484
            P S GY PTSP Y+                    PG   + +++ YSP+SP+YSP SP+Y
Sbjct: 1633 PSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSY 1692

Query: 485  AAASSPAYQPPS 520
             + SSP+Y P S
Sbjct: 1693 -SPSSPSYSPTS 1703

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 66/175 (37%), Positives = 88/175 (50%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T S+SP   +  A+ + +P   +P  S  G    + SP SP Y+  SP + G      + 
Sbjct: 1724 TPSYSPTSPNYSASPQYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1772

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
            G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P   
Sbjct: 1773 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1830

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1831 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1879

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 66/168 (39%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
                +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609

Query: 395  PAYARPGTVVAAANV------YSPSSPAYSPFSPNYAAA----SSPAY 508
            P YA P       N       YSPSS  YSP SP Y+      SSP++
Sbjct: 1610 PLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGYSPTAQFQSSPSF 1657

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 66/206 (32%), Positives = 87/206 (42%), Gaps = 36/206 (17%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRA-TPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            TA F    S A +     +PG   +P  S     +P  SP SP Y+  SP +        
Sbjct: 1648 TAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSY-------- 1699

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---------------------- 298
            +  +  Y+P SP+Y  TSP   Y+P TP+ + +SP YS                      
Sbjct: 1700 SPTSPCYSPTSPSYSPTSPN--YTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPT 1757

Query: 299  -PGYSPTSPSVGARGG-----PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
             P YSP SPS     G     P +   SP SP Y PTSP Y+      + +N YSP+   
Sbjct: 1758 SPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGST 1817

Query: 461  YSPFSPNYA------AASSPAYQPPS 520
            YS  SP Y+      + SS  Y P S
Sbjct: 1818 YSATSPRYSPNMSIYSPSSTKYSPTS 1843

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1765 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1817

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1818 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1871

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1872 SPAYSPSSPTF 1882

[156][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
            RepID=A9UNH9_DROME
          Length = 1887

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 70/200 (35%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP-----ASPGYAAMSPRFGGG 169
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP     ASP YA+ +P F   
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASPRYASTTPNFNPQ 1627

Query: 170  LGGGPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGYS 298
              G     +G Y+P SP Y  T                 SPG  YSPS+   + +SP YS
Sbjct: 1628 STGYSPSSSG-YSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYS 1686

Query: 299  P---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
            P    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SPA
Sbjct: 1687 PTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPA 1746

Query: 461  YSPFSPNYAAASSPAYQPPS 520
            YS     Y + +SP Y PPS
Sbjct: 1747 YSQTGVKY-SPTSPTYSPPS 1765

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 24/192 (12%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SFSP  +S DA+G      M+P  SPA    P  SP+SPG  +MSP F       P+   
Sbjct: 1533 SFSPSAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS--- 1578

Query: 197  GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGY-SPGYSPTSPSVGARGGPAAGYAS 364
              Y+P SP Y A+SPG     YSPS+P  + +SP Y SP Y+ T+P+   +   + GY S
Sbjct: 1579 --YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQ---STGY-S 1632

Query: 365  PQSPGYVPTSPAYA-------------------RPGTVVA-AANVYSPSSPAYSPFSPNY 484
            P S GY PTSP Y+                    PG   + +++ YSP+SP+YSP SP+Y
Sbjct: 1633 PSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSY 1692

Query: 485  AAASSPAYQPPS 520
             + SSP+Y P S
Sbjct: 1693 -SPSSPSYSPTS 1703

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 65/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T S+SP   +  A+ + +P   +P  S  G    + SP SP Y+  SP + G      + 
Sbjct: 1724 TPSYSPTSPNYSASPQYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1772

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
            G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P   
Sbjct: 1773 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1830

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP S  Y PTSP Y         A  YSP+ P YSP +P++ + +SPAY P S
Sbjct: 1831 IYSPSSTKYSPTSPTYT------PTARNYSPTPPMYSPTAPSHYSPTSPAYSPSS 1879

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 67/168 (39%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P A   TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
                +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609

Query: 395  PAYARPGTVVAAANV------YSPSSPAYSPFSPNYAAA----SSPAY 508
            P YA P       N       YSPSS  YSP SP Y+      SSP++
Sbjct: 1610 PLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSF 1657

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            +SP  + + ++   +P   +P  SP    +P  SP+SP Y+  SP +        +  + 
Sbjct: 1665 YSPGNAYSPSSSNYSPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1718

Query: 200  AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
             Y P +P+Y  TSP       YSP++PA + +   YSP    YSP SPS     G     
Sbjct: 1719 NYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1778

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
            P +   SP SP Y PTSP Y+      + +N YSP+   YS  SP Y+      + SS  
Sbjct: 1779 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1838

Query: 506  YQPPS 520
            Y P S
Sbjct: 1839 YSPTS 1843

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 48/131 (36%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1765 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1817

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPT P        A  + SP 
Sbjct: 1818 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTPPMYSPT---APSHYSPT 1871

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1872 SPAYSPSSPTF 1882

[157][TOP]
>UniRef100_O96446 DNA-directed RNA polymerase n=1 Tax=Vairimorpha necatrix
            RepID=O96446_9MICR
          Length = 1605

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 4/170 (2%)
 Frame = +2

Query: 23   SPIMSSAD-AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            SP+  +   ++G  +P  +  G   A + T   SP SP Y+  SP +        +  + 
Sbjct: 1436 SPVSENLSISSGNWSPAYLVEGNRYAPK-TSLYSPTSPTYSPTSPTY--------SPTSP 1486

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
             Y+P SP Y  TSP   YSP++P  + +SP YSP    YSPTSPS      P +   SP 
Sbjct: 1487 TYSPTSPTYSPTSPT--YSPTSPTYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPT 1540

Query: 371  SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP Y PTSP+Y+        +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1541 SPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1583

 Score = 97.4 bits (241), Expect = 5e-19
 Identities = 61/151 (40%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
 Frame = +2

Query: 71   RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 250
            R  P  S     +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   
Sbjct: 1459 RYAPKTSLYSPTSPTYSPTSPTYSPTSPTY--------SPTSPTYSPTSPTYSPTSPT-- 1508

Query: 251  YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
            YSP++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSP+Y+     
Sbjct: 1509 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS----- 1559

Query: 422  VAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
               +  YSP+SP+YSP SP+Y + +SP+Y P
Sbjct: 1560 -PTSPSYSPTSPSYSPTSPSY-SPTSPSYSP 1588

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 55/156 (35%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S        T    +P        +P  SP SP Y+  SP +        +  + +
Sbjct: 1471 SPTYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSY--------SPTSPS 1522

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQS 373
            Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS            SP S
Sbjct: 1523 YSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-----------SPTS 1569

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
            P Y PTSP+             YSP+SP+YSP   N
Sbjct: 1570 PSYSPTSPS-------------YSPTSPSYSPTYDN 1592

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
 Frame = +2

Query: 251  YSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVVA 427
            +SP +  L++SS  +SP Y       G R  P     SP SP Y PTSP Y+    T   
Sbjct: 1435 HSPVSENLSISSGNWSPAYLVE----GNRYAPKTSLYSPTSPTYSPTSPTYSPTSPTYSP 1490

Query: 428  AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  YSP+SP YSP SP Y + +SP+Y P S
Sbjct: 1491 TSPTYSPTSPTYSPTSPTY-SPTSPSYSPTS 1520

[158][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
            RepID=C4JY44_UNCRE
          Length = 1747

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 69/183 (37%), Positives = 86/183 (46%), Gaps = 35/183 (19%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-- 250
            +PG SP+  +    SP SPG    SPRF    G  PA  + ++AP SPAY  TSPG G  
Sbjct: 1530 SPGYSPSSGY----SPTSPGMGITSPRFMTSPGFSPA--SPSFAPTSPAYSPTSPGYGQA 1583

Query: 251  -------YSPSTPALAVSSPGYSP-----------------GYSPTSPSVGARGGPAAGY 358
                   YSP++P  + +SP YSP                  YSPTSP++G   G     
Sbjct: 1584 QSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGVTGRHLSP 1643

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP-AYSPFSPNYAAASS--------PAYQ 511
             SP SP Y PTSP              +SP+SP AYSP SPN+A + +        P Y 
Sbjct: 1644 TSPTSPKYTPTSPG-------------WSPTSPDAYSPTSPNFAGSPTSPGWSLLPPGYS 1690

Query: 512  PPS 520
            P S
Sbjct: 1691 PTS 1693

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
 Frame = +2

Query: 32   MSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
            +SS D   + +P   T   +PAG FT    P   G++    R  GG G  P       +P
Sbjct: 1472 ISSPDPDSQFSPIGQTGSETPAG-FTEYQPPGFGGFSPAGARSPGG-GYSPTSPFNT-SP 1528

Query: 212  ASPAYMATSPGMGYSPSTPALAVSSPGY----------------SPGYSPTSPSVGARGG 343
             SP Y   SP  GYSP++P + ++SP +                SP YSPTSP  G    
Sbjct: 1529 TSPGY---SPSSGYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSPAYSPTSPGYGQAQS 1585

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
            P +   SP SPG+ PTSP+Y+        +  +SP+SPA+SP SP+Y+  S
Sbjct: 1586 PTSPSYSPTSPGFSPTSPSYS------PTSPSFSPASPAFSPTSPSYSPTS 1630

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 64/193 (33%), Positives = 89/193 (46%), Gaps = 24/193 (12%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGR------MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG 169
            A+ SF+P   ++ A    +PG        +P  SP    +P  SP SP Y+  SP F   
Sbjct: 1562 ASPSFAP---TSPAYSPTSPGYGQAQSPTSPSYSPT---SPGFSPTSPSYSPTSPSFS-- 1613

Query: 170  LGGGPAGGAGAYAPASPAYMATSPGMG---------YSPSTPALAVSSPGYSP----GYS 310
                PA  + A++P SP+Y  TSP +G          SP++P    +SPG+SP     YS
Sbjct: 1614 ----PA--SPAFSPTSPSYSPTSPALGGVTGRHLSPTSPTSPKYTPTSPGWSPTSPDAYS 1667

Query: 311  PTSPSVGARGGPAAGYASPQSPGYVPTSPAY-----ARPGTVVAAANVYSPSSPAYSPFS 475
            PTSP+    G P +   S   PGY PTSP Y     A     +  ++V  P  P Y   +
Sbjct: 1668 PTSPNFA--GSPTSPGWSLLPPGYSPTSPTYNPNISAPVKLTLGLSDVLFPIYP-YLSTT 1724

Query: 476  PNYAAASSPAYQP 514
            P Y   +S  + P
Sbjct: 1725 PKYLCTTSCLFYP 1737

[159][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
            melanogaster RepID=RPB1_DROME
          Length = 1887

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 70/200 (35%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP-----ASPGYAAMSPRFGGG 169
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP     ASP YA+ +P F   
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYASPRYASTTPNFNPQ 1627

Query: 170  LGGGPAGGAGAYAPASPAYMAT-----------------SPGMGYSPSTPALAVSSPGYS 298
              G     +G Y+P SP Y  T                 SPG  YSPS+   + +SP YS
Sbjct: 1628 STGYSPSSSG-YSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYS 1686

Query: 299  P---GYSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
            P    YSP+SPS         P +   SP SP Y P +P+Y+      +A+  YSP+SPA
Sbjct: 1687 PTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPA 1746

Query: 461  YSPFSPNYAAASSPAYQPPS 520
            YS     Y + +SP Y PPS
Sbjct: 1747 YSQTGVKY-SPTSPTYSPPS 1765

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 24/192 (12%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SFSP  +S DA+G      M+P  SPA    P  SP+SPG  +MSP F       P+   
Sbjct: 1533 SFSPSAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS--- 1578

Query: 197  GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGY-SPGYSPTSPSVGARGGPAAGYAS 364
              Y+P SP Y A+SPG     YSPS+P  + +SP Y SP Y+ T+P+   +   + GY S
Sbjct: 1579 --YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQ---STGY-S 1632

Query: 365  PQSPGYVPTSPAYA-------------------RPGTVVA-AANVYSPSSPAYSPFSPNY 484
            P S GY PTSP Y+                    PG   + +++ YSP+SP+YSP SP+Y
Sbjct: 1633 PSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSY 1692

Query: 485  AAASSPAYQPPS 520
             + SSP+Y P S
Sbjct: 1693 -SPSSPSYSPTS 1703

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 66/175 (37%), Positives = 88/175 (50%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T S+SP   +  A+ + +P   +P  S  G    + SP SP Y+  SP + G      + 
Sbjct: 1724 TPSYSPTSPNYSASPQYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1772

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
            G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P   
Sbjct: 1773 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1830

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1831 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1879

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 67/168 (39%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P A   TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
                +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609

Query: 395  PAYARPGTVVAAANV------YSPSSPAYSPFSPNYAAA----SSPAY 508
            P YA P       N       YSPSS  YSP SP Y+      SSP++
Sbjct: 1610 PLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSF 1657

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            +SP  + + ++   +P   +P  SP    +P  SP+SP Y+  SP +        +  + 
Sbjct: 1665 YSPGNAYSPSSSNYSPN--SPSYSPT---SPSYSPSSPSYSPTSPCYSP-TSPSYSPTSP 1718

Query: 200  AYAPASPAYMATSPGMG----YSPSTPALAVSSPGYSPG---YSPTSPSVGARGG----- 343
             Y P +P+Y  TSP       YSP++PA + +   YSP    YSP SPS     G     
Sbjct: 1719 NYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYT 1778

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPA 505
            P +   SP SP Y PTSP Y+      + +N YSP+   YS  SP Y+      + SS  
Sbjct: 1779 PGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTK 1838

Query: 506  YQPPS 520
            Y P S
Sbjct: 1839 YSPTS 1843

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1765 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1817

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1818 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1871

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1872 SPAYSPSSPTF 1882

[160][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4JXA6_DROGR
          Length = 1889

 Score = 97.1 bits (240), Expect = 7e-19
 Identities = 77/194 (39%), Positives = 103/194 (53%), Gaps = 26/194 (13%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            SFSP  +S DA+G      M+P  SPA    P  SP+SPG  +MSP F       P+   
Sbjct: 1533 SFSPSAAS-DASG------MSPSWSPAH---PGSSPSSPG-PSMSPYFPASPSVSPS--- 1578

Query: 197  GAYAPASPAYMATSPG---MGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGY 358
              Y+P SP Y A+SPG     YSPS+P  + +SP Y   SP Y+  +P+  A+   + GY
Sbjct: 1579 --YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYTATSPRYASATPNFNAQ---STGY 1633

Query: 359  ASPQSPGYVPTSPAYA-------------------RPGTVVA-AANVYSPSSPAYSPFSP 478
             SP S GY PTSP Y+                    PG   + +++ YSP+SP+YSP SP
Sbjct: 1634 -SPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNLYSPGNAYSPSSSNYSPNSPSYSPMSP 1692

Query: 479  NYAAASSPAYQPPS 520
            +Y + SSP+Y P S
Sbjct: 1693 SY-SPSSPSYSPTS 1705

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T S+SP   +  A+   +P   +P  S  G    + SP SP Y+  SP + G      + 
Sbjct: 1726 TPSYSPTSPNYSASPHYSPA--SPAYSQTG---VKYSPTSPTYSPPSPSYDG------SP 1774

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGA---RGGPAAG 355
            G+  Y P SP Y   SP   YSP++P  + SSP +SP   YSPT  +  A   R  P   
Sbjct: 1775 GSPQYTPGSPQYSPASPK--YSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMS 1832

Query: 356  YASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              SP S  Y PTSP Y         A  YSP+SP YSP +P++ + +SPAY P S
Sbjct: 1833 IYSPSSTKYSPTSPTYT------PTARNYSPTSPMYSPTAPSHYSPTSPAYSPSS 1881

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 69/205 (33%), Positives = 92/205 (44%), Gaps = 33/205 (16%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            + + S+SP   +  A+   +PG  +P  SP+   +P  SP SP Y A SPR+        
Sbjct: 1574 SVSPSYSPTSPNYTAS---SPGGASPNYSPS---SPNYSPTSPLYTATSPRYASATPNFN 1627

Query: 185  AGGAG------AYAPASPAYMATS-----------------PGMGYSPSTPALAVSSPGY 295
            A   G       Y+P SP Y  TS                 PG  YSPS+   + +SP Y
Sbjct: 1628 AQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNLYSPGNAYSPSSSNYSPNSPSY 1687

Query: 296  SP----------GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYS 445
            SP           YSPTSP       P +   SP SP Y   +P+Y+      +A+  YS
Sbjct: 1688 SPMSPSYSPSSPSYSPTSPCY----SPTSPSYSPTSPKYTAVTPSYSPTSPNYSASPHYS 1743

Query: 446  PSSPAYSPFSPNYAAASSPAYQPPS 520
            P+SPAYS     Y + +SP Y PPS
Sbjct: 1744 PASPAYSQTGVKY-SPTSPTYSPPS 1767

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 63/163 (38%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
 Frame = +2

Query: 53   GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
            G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 1496 GGSTPS-MTPPMTPWVNCHTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 1554

Query: 221  AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
                +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 1555 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 1609

Query: 395  PAYARPGTVVAAANV--------YSPSSPAYSPFSPNYAAASS 499
            P Y       A+A          YSPSS  YSP SP Y+  S+
Sbjct: 1610 PLYTATSPRYASATPNFNAQSTGYSPSSSGYSPTSPVYSPTSN 1652

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 63/179 (35%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA 196
            S+SP MS + +    +    +P  SP    +P  SP SP Y A++P +        A  +
Sbjct: 1686 SYSP-MSPSYSPSSPSYSPTSPCYSPT---SPSYSPTSPKYTAVTPSYSPTSPNYSA--S 1739

Query: 197  GAYAPASPAYMATSPGMGYSPSTPALAVSSPGY-----SPGYSPTSPSVGARGGPAAGYA 361
              Y+PASPAY  T  G+ YSP++P  +  SP Y     SP Y+P SP             
Sbjct: 1740 PHYSPASPAYSQT--GVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY----------- 1786

Query: 362  SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
            SP SP Y PTSP Y+      + +N YSP+   YS  SP Y+      + SS  Y P S
Sbjct: 1787 SPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1845

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP    +  + + TPG  +P  SPA   +P+ SP SP Y+  SP+        P G    
Sbjct: 1767 SPSYDGSPGSPQYTPG--SPQYSPA---SPKYSPTSPLYSPSSPQHSPSNQYSPTGST-- 1819

Query: 203  YAPASPAYMATSPGMG-YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQ 370
            Y+  SP Y   SP M  YSPS+   + +SP Y+P    YSPTSP        A  + SP 
Sbjct: 1820 YSATSPRY---SPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPT---APSHYSPT 1873

Query: 371  SPGYVPTSPAY 403
            SP Y P+SP +
Sbjct: 1874 SPAYSPSSPTF 1884

[161][TOP]
>UniRef100_A2QAT7 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
            RepID=A2QAT7_ASPNC
          Length = 1747

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 68/172 (39%), Positives = 88/172 (51%), Gaps = 5/172 (2%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRF-GGGLGGGPAGGA 196
            FSP  +S      ++P    P  SP    T   SP SPG A  SPRF     G  PA  +
Sbjct: 1554 FSPAATSPAGYSPSSPFSANP-TSPGYSPTSSYSPTSPGMAITSPRFMSTSPGFSPA--S 1610

Query: 197  GAYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSPGYSPTSPSVGARG---GPAAGYAS 364
             ++AP SPAY  TSP  G  SP++P+ + +SPG+SP    TSP+         PA+   S
Sbjct: 1611 PSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNYSPTSPSFSPASPAFS 1666

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP Y PTSPA    G  ++     SP+SP Y+P SP ++  S   Y P S
Sbjct: 1667 PTSPSYSPTSPAVGGVGRHLSPT---SPTSPKYTPTSPGWSPTSPQTYSPTS 1715

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 69/183 (37%), Positives = 97/183 (53%), Gaps = 11/183 (6%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMT--PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
            T+S+SP   ++      +P  M+  PG SPA   +P  +P SP Y+  SP +G      P
Sbjct: 1582 TSSYSP---TSPGMAITSPRFMSTSPGFSPA---SPSFAPTSPAYSPTSPAYGQASPTSP 1635

Query: 185  AGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG----- 340
            +     Y+P SP +  TSP   YSP++P+ + +SP +SP    YSPTSP+VG  G     
Sbjct: 1636 S-----YSPTSPGFSPTSPN--YSPTSPSFSPASPAFSPTSPSYSPTSPAVGGVGRHLSP 1688

Query: 341  -GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
              P +   +P SPG+ PTSP    P +   A    SP+SP   P SP Y + +SPA+ P 
Sbjct: 1689 TSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAG---SPTSPG-GPTSPGY-SPTSPAFSPT 1743

Query: 518  SRR 526
            S R
Sbjct: 1744 SPR 1746

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 53/158 (33%), Positives = 70/158 (44%), Gaps = 36/158 (22%)
 Frame = +2

Query: 155  RFG--GGLGGGPA----GGAGAYAPASP----AYMAT-SPGMGYSPSTPALAVSSPGYSP 301
            RFG  G +G   A    G A  Y   SP    AY+ T  P   +SP   A A +  G++ 
Sbjct: 1484 RFGVMGAIGAKDAIISDGAATQYDTGSPMQESAYIGTPDPESNFSPIRQAGAETPGGFTE 1543

Query: 302  ---------GYSPTSPSVGARGGPAAGYASPQSPGYVPTSP-AYARPGTVVA-------- 427
                     G+SP + S       +   A+P SPGY PTS  +   PG  +         
Sbjct: 1544 YQPTGGFGGGFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMAITSPRFMSTS 1603

Query: 428  -----AANVYSPSSPAYSPFSPNYAAAS--SPAYQPPS 520
                 A+  ++P+SPAYSP SP Y  AS  SP+Y P S
Sbjct: 1604 PGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTS 1641

[162][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
          Length = 1748

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 66/176 (37%), Positives = 92/176 (52%), Gaps = 9/176 (5%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATP---GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG-GGLGGGPA 187
            FSP  +S      ++P      +PG SP+  +    SP SPG A  SPRF     G  PA
Sbjct: 1555 FSPAATSPAGYSPSSPFSANPTSPGYSPSSSY----SPTSPGMAMTSPRFSMTSPGFSPA 1610

Query: 188  GGAGAYAPASPAYMATSPGMGY-SPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYAS 364
              + ++AP SPAY  TSP  G  SP++P+ + +SPG+SP    TSP+      P +   S
Sbjct: 1611 --SPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSP----TSPNY----SPTSPSFS 1660

Query: 365  PQSPGYVPTSPAYARPGTVVAAA----NVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P SP + PTSP+Y+     +  A    +  SP+SP Y+P SP ++  S   Y P S
Sbjct: 1661 PASPAFSPTSPSYSPTSPAIGGAARHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTS 1716

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +PG SPA   +P  +P SP Y+  SP +G      P+     Y+P SP +  TSP   YS
Sbjct: 1604 SPGFSPA---SPSFAPTSPAYSPTSPAYGQASPTSPS-----YSPTSPGFSPTSPN--YS 1653

Query: 257  PSTPALAVSSPGYSP---GYSPTSPSVGARG------GPAAGYASPQSPGYVPTSPAYAR 409
            P++P+ + +SP +SP    YSPTSP++G          P +   +P SPG+ PTSP    
Sbjct: 1654 PTSPSFSPASPAFSPTSPSYSPTSPAIGGAARHLSPTSPTSPKYTPTSPGWSPTSPQTYS 1713

Query: 410  PGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
            P +   A    SP+SP   P SP Y + +SPA+ P S R
Sbjct: 1714 PTSPNFAG---SPTSPG-GPTSPGY-SPTSPAFSPSSPR 1747

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 66/162 (40%), Positives = 82/162 (50%), Gaps = 19/162 (11%)
 Frame = +2

Query: 92   PAGRFTP--RMSPASPG-YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPS 262
            P   F+P  +    SPG +    P   GG GGG       ++PA     ATSP  GYSPS
Sbjct: 1524 PESNFSPIRQAGAESPGGFTEYQPT--GGFGGG-------FSPA-----ATSPA-GYSPS 1568

Query: 263  TPALA-VSSPGYSPG--YSPTSPSVGA---RGGPAAGYASPQSPGYVPTSPAYARPGTVV 424
            +P  A  +SPGYSP   YSPTSP +     R    +   SP SP + PTSPAY+      
Sbjct: 1569 SPFSANPTSPGYSPSSSYSPTSPGMAMTSPRFSMTSPGFSPASPSFAPTSPAYSPTSPAY 1628

Query: 425  AAAN----VYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
              A+     YSP+SP +SP SPNY+  S      SPA+ P S
Sbjct: 1629 GQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTS 1670

[163][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
            RepID=O09451_9FLOR
          Length = 1732

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 82/195 (42%), Positives = 97/195 (49%), Gaps = 31/195 (15%)
 Frame = +2

Query: 14   ASFSPI-MSSADAAGRATPGRMTPGRSPAGRFTPRMSP---------------ASPGYAA 145
            A+FSP  M+   A G    G +TP +SP   +T  +SP               +SPGYA 
Sbjct: 1492 AAFSPTPMTPGGAGGGGGMGGLTPLQSPGREYTVPLSPGGGGTSPFYSQSPYASSPGYAQ 1551

Query: 146  MSPRFG--GGLGGGPAGGAGAYAPASPAYMATSPGMG-YSPSTPALAVSSPG--YSPGYS 310
               R    GG G    G +G +APASPAY  TSPG   Y+  +PA    SPG  YSP  S
Sbjct: 1552 SPGRMQSPGGAGAYGIGSSGTFAPASPAYRPTSPGPSPYAAQSPA---QSPGVQYSPDKS 1608

Query: 311  --------PTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-TVVAAANVYSPSSP-A 460
                    PT+PS  A GG A+   SP SP Y       A PG   VAA+  YSPSSP A
Sbjct: 1609 RVQVQRAPPTAPS--AAGGGASRSYSPSSPSY--NGRGAASPGANYVAASPGYSPSSPGA 1664

Query: 461  YSPFSPNYAAASSPA 505
            YSP SP   + SSPA
Sbjct: 1665 YSPSSPAAFSPSSPA 1679

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 64/185 (34%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
 Frame = +2

Query: 47   AAGRATPGRM-------TPGR--SPAGRFTP-----------RMSPASPGYA-AMSPRFG 163
            A G ATPGR        TPG   SPA   TP           +MSP++ G A + +P   
Sbjct: 1442 ARGDATPGRKKAFDARATPGLLYSPAAWGTPLRPRTEQGLDQQMSPSADGAAFSPTPMTP 1501

Query: 164  GGLGGGPAGGAGAYAPASPAYMATSPGMGYS-PSTPALAVSSPGYS-------PGYSPTS 319
            GG GGG  GG G   P        SPG  Y+ P +P    +SP YS       PGY+ + 
Sbjct: 1502 GGAGGG--GGMGGLTPLQ------SPGREYTVPLSPGGGGTSPFYSQSPYASSPGYAQSP 1553

Query: 320  PSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
              + + GG A  Y    S  + P SPA             Y P+SP  SP+     AA S
Sbjct: 1554 GRMQSPGG-AGAYGIGSSGTFAPASPA-------------YRPTSPGPSPY-----AAQS 1594

Query: 500  PAYQP 514
            PA  P
Sbjct: 1595 PAQSP 1599

[164][TOP]
>UniRef100_B8M2Y2 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
            RepID=B8M2Y2_TALSN
          Length = 1755

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 69/192 (35%), Positives = 95/192 (49%), Gaps = 27/192 (14%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATP---GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            FSP   S       +P     ++PG SP+  +    SPASPG +  SPRF    G  P+ 
Sbjct: 1555 FSPAPQSPGGYSPTSPFNTSPVSPGYSPSSSY----SPASPGMSITSPRFVTSPGFSPSS 1610

Query: 191  G-----AGAYAPASPAYMATSPGMG------------YSPSTPALAVSSPGY---SPGYS 310
                  + AY+P SP+Y   SP               YSPS+P +++SSP +   SP YS
Sbjct: 1611 PNFQTTSPAYSPTSPSYQQASPSYSPTSPRFSPSSPNYSPSSPNMSLSSPAFSPTSPTYS 1670

Query: 311  PTSPSVGAR---GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVY-SPSSPAYSPFSP 478
            PTSP++G       P +   SP SP + PTSP    P     + N++ SP+SPA    SP
Sbjct: 1671 PTSPAIGGTRQFSSPTSPKYSPASPAWSPTSPEIYSP----TSPNIHGSPTSPARGGTSP 1726

Query: 479  NYAAASSPAYQP 514
            +Y + +SP Y P
Sbjct: 1727 SY-SPTSPQYNP 1737

 Score = 74.3 bits (181), Expect = 5e-12
 Identities = 64/195 (32%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG-YAAMSPRFGGGLGGGPAG 190
            A FSPI      AG  TP   T  +   G      +P SPG Y+  SP            
Sbjct: 1527 AKFSPIRQ----AGSETPAGFTSYQPSQGLGGFSPAPQSPGGYSPTSPF----------- 1571

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALA------VSSPGY----------SPGYSPTSP 322
                 +P SP Y   SP   YSP++P ++      V+SPG+          SP YSPTSP
Sbjct: 1572 ---NTSPVSPGY---SPSSSYSPASPGMSITSPRFVTSPGFSPSSPNFQTTSPAYSPTSP 1625

Query: 323  S---VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP----- 478
            S         P +   SP SP Y P+SP       +  ++  +SP+SP YSP SP     
Sbjct: 1626 SYQQASPSYSPTSPRFSPSSPNYSPSSP------NMSLSSPAFSPTSPTYSPTSPAIGGT 1679

Query: 479  -NYAAASSPAYQPPS 520
              +++ +SP Y P S
Sbjct: 1680 RQFSSPTSPKYSPAS 1694

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
 Frame = +2

Query: 182  PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
            P+ G G ++PA       SPG GYSP++P    ++   SPGYSP+S              
Sbjct: 1548 PSQGLGGFSPAPQ-----SPG-GYSPTSP---FNTSPVSPGYSPSSSY------------ 1586

Query: 362  SPQSPGYVPTSPAYAR-PGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
            SP SPG   TSP +   PG   ++ N +  +SPAYSP SP+Y  A SP+Y P S R
Sbjct: 1587 SPASPGMSITSPRFVTSPGFSPSSPN-FQTTSPAYSPTSPSYQQA-SPSYSPTSPR 1640

[165][TOP]
>UniRef100_Q8SSC4 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Encephalitozoon
            cuniculi RepID=RPB1_ENCCU
          Length = 1599

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
 Frame = +2

Query: 113  RMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG 292
            R+SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YSP++P+ + +SP 
Sbjct: 1465 RLSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPS 1514

Query: 293  YSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAY 463
            YSP    YSPTSPS      P +   SP SP Y PTSP+Y+        +  YSP+SP+Y
Sbjct: 1515 YSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSY 1564

Query: 464  SPFSPNYAAASS 499
            SP SP+Y+ + S
Sbjct: 1565 SPTSPSYSVSMS 1576

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 4/109 (3%)
 Frame = +2

Query: 206  APASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSP 376
            +P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP SP
Sbjct: 1467 SPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSP 1520

Query: 377  GYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1521 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1568

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 6/104 (5%)
 Frame = +2

Query: 227  MATSPGMG--YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPT 391
            MA S  +G   SP++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PT
Sbjct: 1456 MAYSRDLGERLSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPT 1511

Query: 392  SPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            SP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1512 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1554

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
 Frame = +2

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPS--VGARGGPAAGYASPQSP 376
            + P  PA    S     +PS+ + ++SS  +SP +   + S  +G R  P +   SP SP
Sbjct: 1424 FKPNEPATPVIS-----TPSSDSFSISSGNWSPTHLEMAYSRDLGERLSPTSPSYSPTSP 1478

Query: 377  GYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             Y PTSP+Y+      +  +  YSP+SP+YSP SP+Y + +SP+Y P S
Sbjct: 1479 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTS 1526

[166][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
            RepID=UPI000023F34A
          Length = 1758

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 71/205 (34%), Positives = 93/205 (45%), Gaps = 44/205 (21%)
 Frame = +2

Query: 38   SADAAGRATP----------GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--- 178
            S D  G ATP          G ++     AG F+P     S   A     +GGG  G   
Sbjct: 1493 SGDIEGAATPYDTGSPMADSGYLSMSSPAAGNFSPIQGAGSDTPAGFDTVYGGGSVGFGG 1552

Query: 179  ---------GPAGGAGAYAPASP-AYMATSPGMGYSPSTPAL--------AVSSPGYSPG 304
                     G A    + +P SP +Y  TSP MGYSP++P +          +SP +SP 
Sbjct: 1553 TTPMSPYNRGAASPFSSTSPTSPFSYSPTSPNMGYSPTSPLIDGGGMGRYGPTSPSFSPS 1612

Query: 305  ---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
               +SPTSP +     PA+   SP SP Y PTSP+  R  +  + A   SP+SP+YSP S
Sbjct: 1613 SPSFSPTSPMLRPTS-PASPSYSPTSPSYSPTSPSSPRHYSPTSPAQFNSPTSPSYSPAS 1671

Query: 476  PNYAAAS----------SPAYQPPS 520
            PNY+  S          SP+Y P S
Sbjct: 1672 PNYSPTSPNVHGAGGPTSPSYSPAS 1696

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 65/166 (39%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
 Frame = +2

Query: 53   GRATPGRMTPGRSPAGRFTPRMSPASP--GYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
            G A+P   T   SP        SP SP  GY+  SP   GG       G G Y P SP++
Sbjct: 1562 GAASPFSSTSPTSPFS-----YSPTSPNMGYSPTSPLIDGG-------GMGRYGPTSPSF 1609

Query: 227  MATSPGMGYSPSTPALAVSSPGY------SPGYSPTSPSVGARGGPA--AGYASPQSPGY 382
              +SP   +SP++P L  +SP        SP YSPTSPS      P   A + SP SP Y
Sbjct: 1610 SPSSPS--FSPTSPMLRPTSPASPSYSPTSPSYSPTSPSSPRHYSPTSPAQFNSPTSPSY 1667

Query: 383  VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             P SP Y+     V  A    P+SP+YSP SP+++  S  AY P S
Sbjct: 1668 SPASPNYSPTSPNVHGAG--GPTSPSYSPASPSWSPTSPEAYSPTS 1711

 Score = 90.1 bits (222), Expect = 8e-17
 Identities = 63/166 (37%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            +SP     D  G    G  +P  SP+   +P  SP SP     SP             + 
Sbjct: 1587 YSPTSPLIDGGGMGRYGPTSPSFSPS---SPSFSPTSPMLRPTSP------------ASP 1631

Query: 200  AYAPASPAYMATSPGMG--YSPSTPAL--AVSSPGYSPG---YSPTSPSVGARGGPAAGY 358
            +Y+P SP+Y  TSP     YSP++PA   + +SP YSP    YSPTSP+V   GGP +  
Sbjct: 1632 SYSPTSPSYSPTSPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPTSPNVHGAGGPTSPS 1691

Query: 359  ASPQSPGYVPTSP-AYA--RPGTVVAAANVYSPSSPAYSPFSPNYA 487
             SP SP + PTSP AY+   P    +     SP+SP+YSP SP ++
Sbjct: 1692 YSPASPSWSPTSPEAYSPTSPTFQRSPTTQQSPTSPSYSPTSPAFS 1737

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 59/159 (37%), Positives = 79/159 (49%), Gaps = 8/159 (5%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGG 178
            A+ S+SP   S      ++P   +P  SPA      +P  SPASP Y+  SP   G   G
Sbjct: 1629 ASPSYSPTSPSYSPTSPSSPRHYSP-TSPAQFNSPTSPSYSPASPNYSPTSPNVHGA--G 1685

Query: 179  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS-----SPGYSPGYSPTSPSVGARGG 343
            GP   + +Y+PASP++  TSP   YSP++P    S     SP  SP YSPTSP+      
Sbjct: 1686 GPT--SPSYSPASPSWSPTSPE-AYSPTSPTFQRSPTTQQSPT-SPSYSPTSPAF----- 1736

Query: 344  PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPA 460
                  SP++PG          PGT   + N YSP+SP+
Sbjct: 1737 ------SPRTPG----------PGT---SGNQYSPNSPS 1756

[167][TOP]
>UniRef100_Q58EF0 Polr2a protein (Fragment) n=2 Tax=Danio rerio RepID=Q58EF0_DANRE
          Length = 161

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 61/163 (37%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 15  SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 59

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
           Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP       P +   SP S
Sbjct: 60  YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPTYTPTSPKYS----PTSPTYSPTS 113

Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
           P Y PTSP Y+         + YSP+SP YSP SP Y+ A SP
Sbjct: 114 PKYSPTSPTYSPTSP---KGSTYSPTSPGYSPTSPTYSPAISP 153

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 61/162 (37%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
 Frame = +2

Query: 71  RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 250
           R TP        +P  SP+SP Y+  SP++           + +Y+P+SP Y  TSP   
Sbjct: 3   RYTPQSPTYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYTPTSP--K 52

Query: 251 YSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
           YSP++P  + +SP Y   SP YSPT+P    +  P +   SP SP Y PTSP Y+     
Sbjct: 53  YSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTSPTYTPTSPKYS----- 103

Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
              +  YSP+SP YSP SP Y+  S         SP Y P S
Sbjct: 104 -PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 144

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 38/92 (41%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = +2

Query: 242 GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG-T 418
           G  Y+P +P    SSP YSP    +SPS            SP SP Y PTSP+Y+     
Sbjct: 1   GPRYTPQSPTYTPSSPSYSP----SSPSY-----------SPTSPKYTPTSPSYSPSSPE 45

Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
               +  YSP+SP YSP SP Y + +SP Y P
Sbjct: 46  YTPTSPKYSPTSPKYSPTSPKY-SPTSPTYSP 76

[168][TOP]
>UniRef100_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cryptosporidium parvum
            Iowa II RepID=Q5CUJ2_CRYPV
          Length = 1902

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 62/160 (38%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1721 SPHYSPT---SPHYSPTSPHYSPTSPHY--------SPTSPHYSPTSPHYSPTSPH--YS 1767

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P  + +SP YSP    YSPTSP       P++ + SP SP Y PTSP Y       +
Sbjct: 1768 PTSPHYSPTSPHYSPTSPHYSPTSPHYS----PSSPHYSPTSPQYSPTSPNYNPASPNYS 1823

Query: 428  AANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
              + YSP+SP Y+P SPNY+ +S         SP Y P S
Sbjct: 1824 PTSHYSPTSPNYNPTSPNYSPSSPNYISNNSGSPGYSPSS 1863

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 61/151 (40%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1742 SPHYSPT---SPHYSPTSPHYSPTSPHY--------SPTSPHYSPTSPHYSPTSPH--YS 1788

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P  + SSP YSP    YSPTSP+         P + Y SP SP Y PTSP Y+ P +
Sbjct: 1789 PTSPHYSPSSPHYSPTSPQYSPTSPNYNPASPNYSPTSHY-SPTSPNYNPTSPNYS-PSS 1846

Query: 419  VVAAANVYSPSSPAYSPFSPNY---AAASSP 502
                +N  +  SP YSP SP Y   A AS P
Sbjct: 1847 PNYISN--NSGSPGYSPSSPQYDPIAVASVP 1875

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 68/196 (34%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG-------YAAMSPRFGGGLG 175
            S+ P+  S   +G+ +P +MTP RSP       MSP SPG       Y+ MSP       
Sbjct: 1579 SYEPM--SPMISGQFSPVQMTP-RSP-------MSPVSPGGIFSPVPYSPMSP------- 1621

Query: 176  GGPAGGAGAYAPASPAYMATSPGMG-------------------YSPSTPALAVSS-PGY 295
               +     Y P SP Y A+SP                      YSPS+P  + +     
Sbjct: 1622 ---SSPLMDYTPTSPIYAASSPTYNTEVSERARKKYKVNNTLSSYSPSSPLNSDNKISNI 1678

Query: 296  SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPF 472
            SP  SPTSP       P + + SP SP Y PTSP Y+      +  +  YSP+SP YSP 
Sbjct: 1679 SPDLSPTSPHYS----PTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPT 1734

Query: 473  SPNYAAASSPAYQPPS 520
            SP+Y + +SP Y P S
Sbjct: 1735 SPHY-SPTSPHYSPTS 1749

[169][TOP]
>UniRef100_Q5CH45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
            RepID=Q5CH45_CRYHO
          Length = 1895

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 62/160 (38%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1714 SPHYSPT---SPHYSPTSPHYSPTSPHY--------SPTSPHYSPTSPHYSPTSPH--YS 1760

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
            P++P  + +SP YSP    YSPTSP       P++ + SP SP Y PTSP Y       +
Sbjct: 1761 PTSPHYSPTSPHYSPTSPHYSPTSPHYS----PSSPHYSPTSPQYSPTSPNYNPASPNYS 1816

Query: 428  AANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
              + YSP+SP Y+P SPNY+ +S         SP Y P S
Sbjct: 1817 PTSHYSPTSPNYNPTSPNYSPSSPNYISNNSGSPGYSPSS 1856

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 59/154 (38%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  +  Y+P SP Y  TSP   YS
Sbjct: 1735 SPHYSPT---SPHYSPTSPHYSPTSPHY--------SPTSPHYSPTSPHYSPTSPH--YS 1781

Query: 257  PSTPALAVSSPGYSPG---YSPTSPSVGARG---GPAAGYASPQSPGYVPTSPAYARPGT 418
            P++P  + SSP YSP    YSPTSP+         P + Y SP SP Y PTSP Y+    
Sbjct: 1782 PTSPHYSPSSPHYSPTSPQYSPTSPNYNPASPNYSPTSHY-SPTSPNYNPTSPNYSPSSP 1840

Query: 419  VVAAANV----YSPSSPAYSPFSPNYAAASSPAY 508
               + N     YSPSSP Y P +   +   SP+Y
Sbjct: 1841 NYISNNSGSPGYSPSSPQYDPIAVT-SVPRSPSY 1873

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 68/196 (34%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG-------YAAMSPRFGGGLG 175
            S+ P+  S   +G+ +P +MTP RSP       MSP SPG       Y+ MSP       
Sbjct: 1572 SYEPM--SPMISGQFSPVQMTP-RSP-------MSPVSPGGIFSPVPYSPMSP------- 1614

Query: 176  GGPAGGAGAYAPASPAYMATSPGMG-------------------YSPSTPALAVSS-PGY 295
               +     Y P SP Y A+SP                      YSPS+P  + +     
Sbjct: 1615 ---SSPLMDYTPTSPIYAASSPTYNTEVSERARKKYKVNNTLSSYSPSSPLNSDNKISNI 1671

Query: 296  SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANV-YSPSSPAYSPF 472
            SP  SPTSP       P + + SP SP Y PTSP Y+      +  +  YSP+SP YSP 
Sbjct: 1672 SPDLSPTSPHYS----PTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPT 1727

Query: 473  SPNYAAASSPAYQPPS 520
            SP+Y + +SP Y P S
Sbjct: 1728 SPHY-SPTSPHYSPTS 1742

[170][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
            RepID=Q84KP6_CYAME
          Length = 1819

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 71/173 (41%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRF-TPRMSP-ASPGYAAMSPRFGGGLGGGPAG 190
            SFSP +  + A      G        AGR+     SP AS   +A +P +     GG  G
Sbjct: 1568 SFSPAVGFSPATSTYVGG---DAMKDAGRYGLGGTSPFASFSASATTPNWAPSPAGGGTG 1624

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
              GA++P+SPAY  TSP +  SP++PA + +SP YSP    TSP+            SP 
Sbjct: 1625 TLGAFSPSSPAYSPTSPRL-VSPTSPAYSPTSPAYSP----TSPAY-----------SPT 1668

Query: 371  SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA-AASSP--AYQPPS 520
            SP Y PTSPAY+        +  YSP+SPAYSP SPN A + SSP  AY P S
Sbjct: 1669 SPAYSPTSPAYS------PTSPAYSPTSPAYSPSSPNVAYSPSSPNVAYSPSS 1715

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 73/190 (38%), Positives = 97/190 (51%), Gaps = 22/190 (11%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG- 193
            +FSP   S+ A    +P  ++P        +P  SP SP Y+  SP +       PA   
Sbjct: 1628 AFSP---SSPAYSPTSPRLVSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT---SPAYSP 1681

Query: 194  -AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVG-ARGGPAAGYA-- 361
             + AY+P SPAY  +SP + YSPS+P +A S    +  YSP+SP+V  +   P   Y+  
Sbjct: 1682 TSPAYSPTSPAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPS 1741

Query: 362  ------SPQSP--GYVPTSP--AYARPGTVVA----AANVYSPSSP--AYSPFSPNYA-A 490
                  SP SP   Y P+SP  AY+     VA    +   YSPSSP  AYSP SPN A +
Sbjct: 1742 SPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPVAYSPSSPNVAYSPSSPNVAYS 1801

Query: 491  ASSPAYQPPS 520
             SSPA+ P S
Sbjct: 1802 PSSPAFSPSS 1811

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 61/169 (36%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG---LGGGPAGG 193
            SP  S    A   T    +P        +P  SP SP Y+  SP +      +   P+  
Sbjct: 1648 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSP 1707

Query: 194  AGAYAPASP--AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVG-ARGGPAAGYAS 364
              AY+P+SP  AY  +SP + YSPS+P +A S    +  YSP+SP+V  +   P   Y S
Sbjct: 1708 NVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAY-S 1766

Query: 365  PQSPG--YVPTSPAYARPGTVVAAAN------VYSPSSPAYSPFSPNYA 487
            P SP   Y P+SP    P +   A +       YSPSSPA+SP SP Y+
Sbjct: 1767 PSSPNVAYSPSSPVAYSPSSPNVAYSPSSPNVAYSPSSPAFSPSSPVYS 1815

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 59/163 (36%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFG-----GGLGGGPA 187
            SP  S    A   T    +P        +P  SP SP Y+  SP          +   P+
Sbjct: 1655 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSPNVAYSPS 1714

Query: 188  GGAGAYAPASP--AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVG-ARGGPAAGY 358
                AY+P+SP  AY  +SP + YSPS+P +A S    +  YSP+SP+V  +   P   Y
Sbjct: 1715 SPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAY 1774

Query: 359  ASPQSP-GYVPTSP--AYARPGTVVA---AANVYSPSSPAYSP 469
             SP SP  Y P+SP  AY+     VA   ++  +SPSSP YSP
Sbjct: 1775 -SPSSPVAYSPSSPNVAYSPSSPNVAYSPSSPAFSPSSPVYSP 1816

[171][TOP]
>UniRef100_UPI00006A20E2 DNA-directed RNA polymerase II subunit RPB1 (EC 2.7.7.6) (RNA
           polymerase II subunit B1) (DNA-directed RNA polymerase
           II subunit A) (DNA-directed RNA polymerase III largest
           subunit). n=1 Tax=Xenopus (Silurana) tropicalis
           RepID=UPI00006A20E2
          Length = 162

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 61/162 (37%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
 Frame = +2

Query: 71  RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG 250
           R TP        +P  SP+SP Y+  SP++           + +Y+P+SP Y  TSP   
Sbjct: 2   RYTPQSPSYTPSSPSYSPSSPSYSPTSPKY--------TPTSPSYSPSSPEYTPTSP--K 51

Query: 251 YSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV 421
           YSP++P  + +SP Y   SP YSPT+P    +  P +   SP SP Y PTSP Y+     
Sbjct: 52  YSPTSPKYSPTSPKYSPTSPTYSPTTP----KYSPTSPTYSPTSPVYTPTSPKYS----- 102

Query: 422 VAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQPPS 520
              +  YSP+SP YSP SP Y+  S         SP Y P S
Sbjct: 103 -PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS 143

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 62/167 (37%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S +  +   T  + TP        +P  +P SP Y+  SP+               
Sbjct: 14  SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK--------------- 58

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
           Y+P SP Y  TSP   YSP+TP  + +SP YSP    Y+PTSP    +  P +   SP S
Sbjct: 59  YSPTSPKYSPTSPT--YSPTTPKYSPTSPTYSPTSPVYTPTSP----KYSPTSPTYSPTS 112

Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           P Y PTSP Y+         + YSP+SP YSP SP Y + +SPA  P
Sbjct: 113 PKYSPTSPTYS---PTSPKGSTYSPTSPGYSPTSPTY-SLTSPAISP 155

[172][TOP]
>UniRef100_B6QAY2 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224
            RepID=B6QAY2_PENMQ
          Length = 1744

 Score = 91.3 bits (225), Expect = 4e-17
 Identities = 70/199 (35%), Positives = 97/199 (48%), Gaps = 30/199 (15%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATP---GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG---- 178
            FSP   S       +P     ++PG SP+  +    SP+SP  +  SPRF     G    
Sbjct: 1555 FSPAPQSPGGYSPTSPFNTSPVSPGYSPSSSY----SPSSPNMSVTSPRFMSTSPGFSPQ 1610

Query: 179  GPAGG--AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---------------- 304
             PA    + AY+P SP++ ATSP   YSP++P  + SSP YSP                 
Sbjct: 1611 SPAFAITSPAYSPTSPSFQATSPS--YSPTSPRFSPSSPNYSPSSPNFSPASPAFSPSSP 1668

Query: 305  -YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVY-SPSSPAYSP 469
             YSPTSP++G R       +SP SP Y P SP ++     +    + N++ SP+SPA   
Sbjct: 1669 TYSPTSPAIGGR---QFSPSSPSSPKYSPASPGWSPTSPEIYSPTSPNIHGSPTSPARGA 1725

Query: 470  FSPNYAAASSPAYQPPSRR 526
             SP+Y + +SP Y P S R
Sbjct: 1726 TSPSY-SPTSPQYNPTSPR 1743

 Score = 81.3 bits (199), Expect = 4e-14
 Identities = 70/197 (35%), Positives = 88/197 (44%), Gaps = 28/197 (14%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPG-YAAMSPRFGGGLGGGPAG 190
            A FSPI      AG  TPG  T  +   G      +P SPG Y+  SP            
Sbjct: 1527 AKFSPIRQ----AGAETPGGFTAYQPSGGLGGFSPAPQSPGGYSPTSPF----------- 1571

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVS-------SPGY----------SPGYSPTS 319
                 +P SP Y   SP   YSPS+P ++V+       SPG+          SP YSPTS
Sbjct: 1572 ---NTSPVSPGY---SPSSSYSPSSPNMSVTSPRFMSTSPGFSPQSPAFAITSPAYSPTS 1625

Query: 320  PSVGARG---GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP---- 478
            PS  A      P +   SP SP Y P+SP ++       A+  +SPSSP YSP SP    
Sbjct: 1626 PSFQATSPSYSPTSPRFSPSSPNYSPSSPNFS------PASPAFSPSSPTYSPTSPAIGG 1679

Query: 479  ---NYAAASSPAYQPPS 520
               + ++ SSP Y P S
Sbjct: 1680 RQFSPSSPSSPKYSPAS 1696

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A A  SP  S    + +AT    +P        +P  SP+SP ++  SP           
Sbjct: 1613 AFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPNYSPSSPNFSPASP----------- 1661

Query: 188  GGAGAYAPASPAYMATSPGMG---YSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY 358
                A++P+SP Y  TSP +G   +SPS+P+    SP  SPG+SPTSP + +   P   +
Sbjct: 1662 ----AFSPSSPTYSPTSPAIGGRQFSPSSPSSPKYSPA-SPGWSPTSPEIYSPTSPNI-H 1715

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
             SP SP    TSP+             YSP+SP Y+P SP
Sbjct: 1716 GSPTSPARGATSPS-------------YSPTSPQYNPTSP 1742

[173][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
            albo-atrum VaMs.102 RepID=C9SR21_9PEZI
          Length = 1756

 Score = 90.9 bits (224), Expect = 5e-17
 Identities = 67/177 (37%), Positives = 84/177 (47%), Gaps = 33/177 (18%)
 Frame = +2

Query: 89   SPAGRFTPRMSPASPGYAAMSPRFGG---GLGGGPAGGAGAYAP-----ASP-------- 220
            S  G F+P +   S         +GG   G GG   G AGA +P      SP        
Sbjct: 1518 SNEGNFSPIVGAGSDDNTGFGTEYGGTYGGFGGASPGRAGATSPFTTSPTSPFSSFAGAG 1577

Query: 221  AYMATSPGMGYSPSTP-----ALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSP 376
             Y  TSPG GYSP++P     A   +SP +SP    +SPTSP V     PA+   SP SP
Sbjct: 1578 GYSPTSPGGGYSPTSPLMDGGARYATSPQFSPSSPSFSPTSP-VHRPTSPASPNYSPTSP 1636

Query: 377  GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNY---------AAASSPAYQPPS 520
             Y PTSP   R  +  + A   SP+SP+YSP SP+Y         A  +SP+Y P S
Sbjct: 1637 SYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPSYSPTSPNLHGAGPTSPSYSPAS 1693

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 72/204 (35%), Positives = 99/204 (48%), Gaps = 36/204 (17%)
 Frame = +2

Query: 17   SFSPIMS--SADAAGRATP--------GRMTPGRSPAGRFTP-RMSPASPGYAAMSPRFG 163
            +FSPI+   S D  G  T         G  +PGR  AG  +P   SP SP  +     F 
Sbjct: 1522 NFSPIVGAGSDDNTGFGTEYGGTYGGFGGASPGR--AGATSPFTTSPTSPFSS-----FA 1574

Query: 164  GGLGGGPAGGAGAYAPASP-----AYMATSPGMGYSPSTPALAVSSPGY----------- 295
            G  G  P    G Y+P SP     A  ATSP   +SPS+P+ + +SP +           
Sbjct: 1575 GAGGYSPTSPGGGYSPTSPLMDGGARYATSPQ--FSPSSPSFSPTSPVHRPTSPASPNYS 1632

Query: 296  --SPGYSPTSPSVGARGGPA--AGYASPQSPGYVPTSPAYARPGTVVAAAN----VYSPS 451
              SP YSPTSP+      P   A + SP SP Y P SP+Y+     +  A      YSP+
Sbjct: 1633 PTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPSYSPTSPNLHGAGPTSPSYSPA 1692

Query: 452  SPAYSPFSPNYA-AASSPAYQPPS 520
            SP++SP SP ++ + +SP++Q P+
Sbjct: 1693 SPSWSPTSPEHSYSPTSPSFQRPA 1716

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 24/188 (12%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRA--TPGRMTPGRSP----AGRF--TPRMSPASPGYAAMSPRFGG 166
            T+  SP  S A A G +  +PG      SP      R+  +P+ SP+SP ++  SP    
Sbjct: 1564 TSPTSPFSSFAGAGGYSPTSPGGGYSPTSPLMDGGARYATSPQFSPSSPSFSPTSPVHRP 1623

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMG--YSPSTPAL--AVSSPGYSPG---YSPTSPS 325
                 P      Y+P SP+Y  TSP     YSP++PA   + +SP YSP    YSPTSP+
Sbjct: 1624 TSPASPN-----YSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPSYSPTSPN 1678

Query: 326  VGARGGPAAGYA------SPQSP--GYVPTSPAYARPGTVVAAANV-YSPSSPAYSPFSP 478
            +   G  +  Y+      SP SP   Y PTSP++ RP    +  +  YSP+SP++SP +P
Sbjct: 1679 LHGAGPTSPSYSPASPSWSPTSPEHSYSPTSPSFQRPAMQQSPTSPNYSPTSPSFSPRTP 1738

Query: 479  NYAAASSP 502
              + +  P
Sbjct: 1739 GPSGSGKP 1746

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 46/126 (36%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGG 178
            A+ ++SP   S       +P   +P  SPA      +P  SPASP Y+  SP   G    
Sbjct: 1627 ASPNYSPTSPSYSPTSPTSPRHYSP-TSPAQFNSPTSPSYSPASPSYSPTSPNLHGA--- 1682

Query: 179  GPAGGAGAYAPASPAYMATSPGMGYSPSTPAL---AVSSPGYSPGYSPTSPSVGARGGPA 349
            GP   + +Y+PASP++  TSP   YSP++P+    A+     SP YSPTSPS   R    
Sbjct: 1683 GPT--SPSYSPASPSWSPTSPEHSYSPTSPSFQRPAMQQSPTSPNYSPTSPSFSPRTPGP 1740

Query: 350  AGYASP 367
            +G   P
Sbjct: 1741 SGSGKP 1746

[174][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
            RepID=B2AA31_PODAN
          Length = 1748

 Score = 90.9 bits (224), Expect = 5e-17
 Identities = 62/165 (37%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
 Frame = +2

Query: 62   TPGRMTPG--RSPAGRFTPRMSPASP--GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM 229
            +PGR T     SP   F+   SP SP  GY+  SP    G   G    +  ++P+SP++ 
Sbjct: 1562 SPGRPTSPFTTSPTSPFSYGYSPTSPAAGYSPTSPLIDAG---GRFASSPQFSPSSPSFS 1618

Query: 230  ATSPGMGY-SPSTPALAVSSPGYSPG-------YSPTSPSVGARGGPAAGYASPQSPGYV 385
             TSP +   SP++P+ + +SP YSP        YSPTSP         A + SP SP Y 
Sbjct: 1619 PTSPMLRPGSPTSPSYSPTSPSYSPASPAATRHYSPTSP---------AQFQSPTSPSYS 1669

Query: 386  PTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            PTSP+Y+       A+  +  +SP+YSP SPN++  S  AY P S
Sbjct: 1670 PTSPSYS------PASPAFQATSPSYSPASPNWSPTSPDAYSPTS 1708

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 61/169 (36%), Positives = 81/169 (47%), Gaps = 28/169 (16%)
 Frame = +2

Query: 98   GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPA--------------YMAT 235
            G F+P +   S G    +  +GGG  G  +    A +P  P               Y  T
Sbjct: 1526 GNFSPIVGNESGGPPGFASEYGGGGYGSSSVNPYATSPGRPTSPFTTSPTSPFSYGYSPT 1585

Query: 236  SPGMGYSPSTPALAV-----SSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPT 391
            SP  GYSP++P +       SSP +SP    +SPTSP +   G P +   SP SP Y P 
Sbjct: 1586 SPAAGYSPTSPLIDAGGRFASSPQFSPSSPSFSPTSPMLRP-GSPTSPSYSPTSPSYSPA 1644

Query: 392  SPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
            SPA  R  +  + A   SP+SP+YSP SP+Y+ AS      SP+Y P S
Sbjct: 1645 SPAATRHYSPTSPAQFQSPTSPSYSPTSPSYSPASPAFQATSPSYSPAS 1693

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 64/173 (36%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRF--TPRMSPASPGYAAMSPRFGGGLGGGP 184
            T+ FS   S    A   +P   +P     GRF  +P+ SP+SP ++  SP    G    P
Sbjct: 1575 TSPFSYGYSPTSPAAGYSP--TSPLIDAGGRFASSPQFSPSSPSFSPTSPMLRPGSPTSP 1632

Query: 185  AGG--AGAYAPASPA----YMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP 346
            +    + +Y+PASPA    Y  TSP    SP++P+ + +SP YSP  SP   +      P
Sbjct: 1633 SYSPTSPSYSPASPAATRHYSPTSPAQFQSPTSPSYSPTSPSYSPA-SPAFQATSPSYSP 1691

Query: 347  AAGYASPQSP-GYVPTSPAYAR-PGTVVAAANV-YSPSSPAYSPFSPNYAAAS 496
            A+   SP SP  Y PTSP + R PG  ++  +  YSP+SP++SP +P  AA S
Sbjct: 1692 ASPNWSPTSPDAYSPTSPTFQRSPGQQMSPTSPGYSPTSPSFSPRTPGRAAGS 1744

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 47/130 (36%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPA---GRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            S+SP   S   A  A     +P  SPA      +P  SP SP Y+  SP F         
Sbjct: 1633 SYSPTSPSYSPASPAATRHYSP-TSPAQFQSPTSPSYSPTSPSYSPASPAF--------Q 1683

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPA--------LAVSSPGYSPGYSPTSPSVGAR-G 340
              + +Y+PASP +  TSP   YSP++P         ++ +SP    GYSPTSPS   R  
Sbjct: 1684 ATSPSYSPASPNWSPTSPD-AYSPTSPTFQRSPGQQMSPTSP----GYSPTSPSFSPRTP 1738

Query: 341  GPAAGYASPQ 370
            G AAG    Q
Sbjct: 1739 GRAAGSGGDQ 1748

[175][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
            RepID=Q7SDN0_NEUCR
          Length = 1752

 Score = 90.5 bits (223), Expect = 6e-17
 Identities = 66/175 (37%), Positives = 95/175 (54%), Gaps = 18/175 (10%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSP-------AGRF--TPRMSPASPGYAAMSPRF 160
            AT+ F+P  +S  + G  +P     G SP       AGRF  +P+ SP+SP ++  SP  
Sbjct: 1570 ATSPFTP--TSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPSFSPTSPML 1627

Query: 161  GGGLGGGPAGG--AGAYAPASPA---YMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPS 325
              G    P+    + +Y+PASPA   Y  TSP   +SP++P+ + +SP YSP  SP   +
Sbjct: 1628 RPGSPTSPSYSPTSPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPA-SPAFQA 1686

Query: 326  VGARGGPAAGYASPQSP-GYVPTSPAYAR-PGTVVAAANV--YSPSSPAYSPFSP 478
                  PA+   SP SP  Y PTSP++ R PG  ++  +   YSP+SP YSP +P
Sbjct: 1687 TSPSYSPASPTWSPTSPDAYSPTSPSFQRSPGQQLSPTSPTGYSPTSPQYSPRTP 1741

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 74/195 (37%), Positives = 93/195 (47%), Gaps = 39/195 (20%)
 Frame = +2

Query: 53   GRATP---GRMTPGRSPAGRFTPRMSPASP--GYAAMSPR---FG---GGLGGGPAG--- 190
            G ATP   G         G ++P M   SP  G  + SP    FG   GG+GG  +G   
Sbjct: 1503 GAATPYDTGSPMADSGFLGSYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVGGYGSGTSY 1562

Query: 191  -------GAGAYAPASP----AYMATSPGMGYSPSTPALA-----VSSPGYSPG---YSP 313
                       + P SP     Y  +SP  GYSPS+P L       SSP +SP    +SP
Sbjct: 1563 SSATSPRATSPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPSFSP 1622

Query: 314  TSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAA 493
            TSP +   G P +   SP SP Y P SPA AR     + A  +SP+SP+YSP SP+Y+ A
Sbjct: 1623 TSPMLRP-GSPTSPSYSPTSPSYSPASPAAARYSPT-SPAQQFSPTSPSYSPTSPSYSPA 1680

Query: 494  S------SPAYQPPS 520
            S      SP+Y P S
Sbjct: 1681 SPAFQATSPSYSPAS 1695

[176][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
            (RNA polymerase II subunit B1) (DNA-directed RNA
            polymerase III largest subunit) n=1 Tax=Acyrthosiphon
            pisum RepID=UPI000179348F
          Length = 1862

 Score = 89.4 bits (220), Expect = 1e-16
 Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 16/185 (8%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
            +S SP  + +  +   +P   +   +     +P  SP SP Y+  SP +        +  
Sbjct: 1622 SSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPSYSPTSPSY--------SPT 1673

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
            + +Y+P SP+Y  TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   S
Sbjct: 1674 SPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYS 1727

Query: 365  PQSPGYVPTSPAYA------RPGTVVAAANV-YSPSSPA------YSPFSPNYAAASSPA 505
            P SP Y P+SP YA       P      +N  YSP+SP+      YSP SP Y + S+ +
Sbjct: 1728 PTSPSYSPSSPQYAASSPSYTPSATSGTSNYKYSPTSPSLAVSPTYSPTSPMY-SPSNAS 1786

Query: 506  YQPPS 520
            Y P S
Sbjct: 1787 YSPSS 1791

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 67/189 (35%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATP-------GRMTPGRSPAGRFTPRMSPASPGYAAMSPRF--- 160
            T S SP M+  D    +TP         +  G +P G   P  SPA    A+ +  F   
Sbjct: 1501 TPSMSPAMTPWDQT--STPMYQNNWSSSLETGMTPGG---PGFSPAGSSEASGTSPFWMS 1555

Query: 161  GGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP-GYSPTSPSVGAR 337
             GG  G P     A +P  P+  + SP   Y PS+P     SP  +P  YSPTSP   A 
Sbjct: 1556 SGGTPGSPGSPGMATSPYVPSPSSMSPNYNY-PSSPQFGSLSPSMTPTNYSPTSPQYSAT 1614

Query: 338  GGPAAGYA--------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAA 493
                  Y+        SP SP Y PTSP+Y+       + + YSP+SP+YSP SP+Y + 
Sbjct: 1615 QQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPS-YSPTSPSYSPTSPSY-SP 1672

Query: 494  SSPAYQPPS 520
            +SP+Y P S
Sbjct: 1673 TSPSYSPTS 1681

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 60/172 (34%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
            +P  SP    +P  SP SP Y+  SP +        +  + +Y+P SP+Y  TSP   YS
Sbjct: 1688 SPSYSPT---SPSYSPTSPSYSPTSPSY--------SPTSPSYSPTSPSYSPTSPS--YS 1734

Query: 257  PSTPALAVSSPGYSPG---------YSPTSPS--VGARGGPAAGYASPQSPGYVPTSPAY 403
            PS+P  A SSP Y+P          YSPTSPS  V     P +   SP +  Y P+S  +
Sbjct: 1735 PSSPQYAASSPSYTPSATSGTSNYKYSPTSPSLAVSPTYSPTSPMYSPSNASYSPSSLQH 1794

Query: 404  A------------RPGTVVAAANVYSPSSPAYSPFSPNYA-AASSPAYQPPS 520
                          P + V +   +S +SP YSP SP Y+    SP Y P S
Sbjct: 1795 TPNAGGTQYNQSYSPSSPVYSPTNFSMASPRYSPTSPTYSPGVGSPHYSPSS 1846

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 52/144 (36%), Positives = 65/144 (45%), Gaps = 32/144 (22%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPA------YMATS 238
            +P  SP    +P  SP+SP YAA SP +      G +     Y+P SP+      Y  TS
Sbjct: 1723 SPSYSPT---SPSYSPSSPQYAASSPSYTPSATSGTSNYK--YSPTSPSLAVSPTYSPTS 1777

Query: 239  P-----GMGYSPS----TP---------ALAVSSPGYSPG--------YSPTSPSVGARG 340
            P        YSPS    TP         + + SSP YSP         YSPTSP+     
Sbjct: 1778 PMYSPSNASYSPSSLQHTPNAGGTQYNQSYSPSSPVYSPTNFSMASPRYSPTSPTYSP-- 1835

Query: 341  GPAAGYASPQSPGYVPTSPAYARP 412
            G  + + SP SP Y PTSP Y+ P
Sbjct: 1836 GVGSPHYSPSSPSYSPTSPNYSGP 1859

[177][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
            uvarioides RepID=Q9AXN1_9FLOR
          Length = 1712

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 71/197 (36%), Positives = 90/197 (45%), Gaps = 30/197 (15%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP---------ASPGYA---AMSPR 157
            ASFSP  ++    G+      TP +SP G + P MSP         ASPG A   A SP 
Sbjct: 1499 ASFSPSPATPGNFGQ-NANAYTPLQSPRGDYMPPMSPGGAASPYVSASPGRASPYATSPA 1557

Query: 158  FGGGLGGGPAGGAGAYAPASPAYMATSPGMG----------------YSPSTPALAVSSP 289
            +    G   AG    +APASPAY  TSP  G                YSP++PA   +SP
Sbjct: 1558 YPQSPGSYNAGSG--FAPASPAYKVTSPAPGGYGGAYQSPARSPGAQYSPTSPAFTPTSP 1615

Query: 290  GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
            GYS    P  P  GA       Y +  SPGY   S     PG    + + YSP+SP ++P
Sbjct: 1616 GYSSATGPGRPGTGAYSPTGPSYNAAASPGY--QSGINYSPG----SPHTYSPNSPVFTP 1669

Query: 470  FSP--NYAAASSPAYQP 514
             SP  +  + S+P Y P
Sbjct: 1670 RSPAAHGYSPSTPQYNP 1686

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 68/184 (36%), Positives = 85/184 (46%), Gaps = 31/184 (16%)
 Frame = +2

Query: 20   FSPIMSSADAAG---RATPGRMTP-GRSPAGRFTPR-------MSPASPGYAAMSPRFGG 166
            + P MS   AA     A+PGR +P   SPA   +P         +PASP Y   SP  GG
Sbjct: 1528 YMPPMSPGGAASPYVSASPGRASPYATSPAYPQSPGSYNAGSGFAPASPAYKVTSPAPGG 1587

Query: 167  --GLGGGPAGGAGA-YAPASPAYMATSPGMG------------YSPSTPAL-AVSSPGYS 298
              G    PA   GA Y+P SPA+  TSPG              YSP+ P+  A +SPGY 
Sbjct: 1588 YGGAYQSPARSPGAQYSPTSPAFTPTSPGYSSATGPGRPGTGAYSPTGPSYNAAASPGYQ 1647

Query: 299  PG--YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS--SPAYS 466
             G  YSP SP   +   P     SP + GY P++P Y   G+     N  SP+  +   S
Sbjct: 1648 SGINYSPGSPHTYSPNSPVFTPRSPAAHGYSPSTPQYNPQGSNPYGQNAGSPAPGNANQS 1707

Query: 467  PFSP 478
            P SP
Sbjct: 1708 PASP 1711

[178][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 68/170 (40%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
 Frame = +2

Query: 20   FSPI-MSSADAAGRATPGRMTPGRSPAG---RFTPRM-------SPASPGYAAMSPRFGG 166
            FSPI + S    GR TPG M+ G+SP     R  PR+       SP+SP Y+     FG 
Sbjct: 1460 FSPIGVDSGRDTGRWTPG-MSGGQSPYASTHRCDPRLMNKRSLRSPSSPVYSMWLASFGL 1518

Query: 167  GLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGAR 337
                      G  +P SP Y  TSP   YSP++P+   +SP YSP    YSPTSPS    
Sbjct: 1519 LQPFLIVRCFGVISPTSPGYSPTSPS--YSPTSPSYTPTSPSYSPTSPSYSPTSPSY--- 1573

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA 487
                    SP SP Y PTSP+Y             SP+SP+YSP SP+Y+
Sbjct: 1574 --------SPTSPSYSPTSPSY-------------SPTSPSYSPTSPSYS 1602

[179][TOP]
>UniRef100_O96452 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae
            RepID=O96452_ANTLO
          Length = 1553

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 70/179 (39%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGR-ATPGRMTPGRSPA-GRFTPRMSP-ASPGYAAMSPRFGGGLGG 178
            A  S  P+  S D  G  ATP   +P      G  +   SP A+ GYAA         G 
Sbjct: 1384 ALRSVIPVAKSFDFLGEVATPVIRSPVSDVRYGSSSVPFSPIAAHGYAA---------GT 1434

Query: 179  GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPA 349
             P+     Y+P SPAY         SP++PA + +SP Y   SP YSPTSP+      P 
Sbjct: 1435 TPS----VYSPTSPAY---------SPTSPAYSPTSPAYSPTSPAYSPTSPAY----SPT 1477

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
            +   SP SP Y PTSPAY+      +  +  YSP+SPAYSP SP Y + +SP Y+P +R
Sbjct: 1478 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-SPTSPVYRPSTR 1535

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-- 178
            +++  FSPI +   AAG  TP   +P        +P  SP SP Y+  SP +        
Sbjct: 1417 SSSVPFSPIAAHGYAAG-TTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1475

Query: 179  --GPAGG--AGAYAPASPAYMATSPGMG-----YSPSTPALAVSSPGYSPGYSPTSPSVG 331
               PA    + AY+P SPAY  TSP        YSP++PA + +SP YSP      PS  
Sbjct: 1476 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPSTR 1535

Query: 332  AR 337
            A+
Sbjct: 1536 AK 1537

[180][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
            RepID=B0DB45_LACBS
          Length = 1742

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 72/179 (40%), Positives = 88/179 (49%), Gaps = 22/179 (12%)
 Frame = +2

Query: 8    ATASFSPIMSSA--DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR-------- 157
            A+ASFSP+ S+   DAA     G    G+SP G     MSP  PGY+  SP         
Sbjct: 1511 ASASFSPLASNGGEDAANFQYLGF---GQSPLG--AGGMSPGGPGYSPSSPNVYSPTSPS 1565

Query: 158  ------FGGG---LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY---SP 301
                  FGG     G  P   +  Y P+  A   TSP   YSP++PAL ++SPGY   SP
Sbjct: 1566 FVPQSPFGGATSPFGTSPYAASPYYDPS--ARNPTSPT--YSPTSPALNLTSPGYSPTSP 1621

Query: 302  GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
             YSPTSPS      P +   SPQSP + PTSP              YSP+SP++SP SP
Sbjct: 1622 RYSPTSPSF----SPTSPRYSPQSPSFSPTSPR-------------YSPTSPSFSPASP 1663

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 64/180 (35%), Positives = 87/180 (48%), Gaps = 17/180 (9%)
 Frame = +2

Query: 32   MSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG---------LGG 178
            M +A   G  TPG+  MTP  + +  +   +    P  A+ SP    G         LG 
Sbjct: 1475 MLAAQIDGGMTPGQVAMTPYDTNSPVWHDNLFKGDPASASFSPLASNGGEDAANFQYLGF 1534

Query: 179  GPAG-GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSP--TSP-SVGARGGP 346
            G +  GAG  +P  P Y  +SP + YSP++P+    SP +    SP  TSP +      P
Sbjct: 1535 GQSPLGAGGMSPGGPGYSPSSPNV-YSPTSPSFVPQSP-FGGATSPFGTSPYAASPYYDP 1592

Query: 347  AAGYASPQSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +A   +P SP Y PTSPA     PG        YSP+SP YSP SP++ + +SP Y P S
Sbjct: 1593 SA--RNPTSPTYSPTSPALNLTSPG--------YSPTSPRYSPTSPSF-SPTSPRYSPQS 1641

[181][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
            RepID=C7YI77_NECH7
          Length = 1750

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 60/154 (38%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
 Frame = +2

Query: 89   SPAGRFTPR--MSPASPG-YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG-YS 256
            SP   F P    SP SP  Y+  SP   GG+GG  A    +++P+SP++  TSP +   S
Sbjct: 1563 SPTSPFGPGGGYSPTSPNAYSPTSPLVDGGMGGRYATSP-SFSPSSPSFSPTSPMVRPTS 1621

Query: 257  PSTPALAVSSPGYSPG-------YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
            P++P  + SSP YSP        YSPTSP+      P +   SP SP Y P SP     G
Sbjct: 1622 PASPNYSPSSPNYSPASPSSPRHYSPTSPA--QFNSPTSPNYSPASPNYSPASPNLHAGG 1679

Query: 416  TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
            T   +   YSP+SP +SP SP   + +SP  + P
Sbjct: 1680 TTSPS---YSPASPTWSPTSPEAYSPTSPYQRSP 1710

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 71/183 (38%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
 Frame = +2

Query: 38   SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP-RFGGGLGG------GPAGGA 196
            S+ AAG  +P +     +PAG           G  AMSP    GG          P G  
Sbjct: 1514 SSPAAGNFSPIQGAGSDTPAGFGNTEYGFG--GSTAMSPYAMRGGTSPFTTSPTSPFGPG 1571

Query: 197  GAYAPASP-AYMATSP----GMGYSPST-PALAVSSPGYSPGYSPTSPSVGARGGPAAGY 358
            G Y+P SP AY  TSP    GMG   +T P+ + SSP +SP    TSP V     PA+  
Sbjct: 1572 GGYSPTSPNAYSPTSPLVDGGMGGRYATSPSFSPSSPSFSP----TSPMVRPTS-PASPN 1626

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS---------SPAYQ 511
             SP SP Y P SP+  R  +  + A   SP+SP YSP SPNY+ AS         SP+Y 
Sbjct: 1627 YSPSSPNYSPASPSSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLHAGGTTSPSYS 1686

Query: 512  PPS 520
            P S
Sbjct: 1687 PAS 1689

 Score = 74.3 bits (181), Expect = 5e-12
 Identities = 59/163 (36%), Positives = 79/163 (48%), Gaps = 22/163 (13%)
 Frame = +2

Query: 98   GRF--TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG--YSPST 265
            GR+  +P  SP+SP ++  SP         P      Y+P+SP Y   SP     YSP++
Sbjct: 1595 GRYATSPSFSPSSPSFSPTSPMVRPTSPASPN-----YSPSSPNYSPASPSSPRHYSPTS 1649

Query: 266  PAL--AVSSPGYSPG---YSPTSPSVGARGGPAAGYA------SPQSP-GYVPTSPAYAR 409
            PA   + +SP YSP    YSP SP++ A G  +  Y+      SP SP  Y PTSP    
Sbjct: 1650 PAQFNSPTSPNYSPASPNYSPASPNLHAGGTTSPSYSPASPTWSPTSPEAYSPTSPYQRS 1709

Query: 410  PGTVVAAANVYSPSSPAYSPFSPNYA------AASSPAYQPPS 520
            PG         SP+SP+YSP SP ++       +S   Y P S
Sbjct: 1710 PGAQ------QSPTSPSYSPTSPAFSPRTPGPGSSGNQYSPNS 1746

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 59/175 (33%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
 Frame = +2

Query: 5    NATASFSPIMSSADAAGRATPGRMTPGR---SPAGRFTPRMSPASPGYAAMSPRFGGGLG 175
            NA +  SP++        AT    +P     SP        SPASP Y+  SP +     
Sbjct: 1580 NAYSPTSPLVDGGMGGRYATSPSFSPSSPSFSPTSPMVRPTSPASPNYSPSSPNYSPASP 1639

Query: 176  GGP-----AGGAGAYAPASPAYMATSPGMGYSPSTPAL---AVSSPGYSPG--------- 304
              P        A   +P SP Y   SP   YSP++P L     +SP YSP          
Sbjct: 1640 SSPRHYSPTSPAQFNSPTSPNYSPASPN--YSPASPNLHAGGTTSPSYSPASPTWSPTSP 1697

Query: 305  --YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVVAAANVYSPSSPA 460
              YSPTSP   + G       SP SP Y PTSPA++ R     ++ N YSP+SP+
Sbjct: 1698 EAYSPTSPYQRSPG----AQQSPTSPSYSPTSPAFSPRTPGPGSSGNQYSPNSPS 1748

[182][TOP]
>UniRef100_A4RMP1 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
            RepID=A4RMP1_MAGGR
          Length = 1757

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 70/197 (35%), Positives = 93/197 (47%), Gaps = 27/197 (13%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTP--GRSPA---------GRFTPRMSPASPGYAAMSPR 157
            T+ FS   +S  +AG  +    +P  G SP          G  +P  SP+SP +   SP 
Sbjct: 1563 TSPFSTSPTSPFSAGYGSYSPTSPMAGYSPTSPMMDGGRYGASSPSFSPSSPSFQPTSPI 1622

Query: 158  FGGGLGGGPAGGAGAYAPASPAYMATSPGMG---YSPSTPALAVSSPGYSPGYSPTSPSV 328
               G     AG +  Y+P SP Y   SP  G   YSP++PA   +SP  SP YSP SPS 
Sbjct: 1623 MRHG-----AGDSMGYSPTSPTYQPGSPTGGDNHYSPTSPAQFGASPT-SPLYSPASPSF 1676

Query: 329  GARGGPAAGY-------ASPQSPG--YVPTSPAYARPGTVVAAANV--YSPSSPAYSPFS 475
               G  +  Y       ASP SP   Y PTSP++ R     +  +   YSP+SP++SP S
Sbjct: 1677 SPGGATSPMYYVGSPQHASPTSPNAHYSPTSPSFQRSPAQASPTSPGPYSPTSPSFSPRS 1736

Query: 476  P--NYAAASSPAYQPPS 520
            P  N  +    +Y P S
Sbjct: 1737 PGRNNRSGGQDSYSPTS 1753

 Score = 80.5 bits (197), Expect = 7e-14
 Identities = 65/184 (35%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--GPAGGA 196
            SP+  S    G A+P          G F+P MS  S      +  +GGG  G   P G  
Sbjct: 1506 SPMGDSGYNLGMASP--------TMGNFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSG 1557

Query: 197  GAYAPASP--------------AYMATSPGMGYSPSTPALAVSSPG-YSPGYSPTSPSVG 331
             +  P SP              +Y  TSP  GYSP++P +     G  SP +SP+SPS  
Sbjct: 1558 TSPRPTSPFSTSPTSPFSAGYGSYSPTSPMAGYSPTSPMMDGGRYGASSPSFSPSSPSFQ 1617

Query: 332  ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAY---SPFSPNYAAASSP 502
                P   + +  S GY PTSP Y +PG+     N YSP+SPA    SP SP Y+ A SP
Sbjct: 1618 PT-SPIMRHGAGDSMGYSPTSPTY-QPGSPTGGDNHYSPTSPAQFGASPTSPLYSPA-SP 1674

Query: 503  AYQP 514
            ++ P
Sbjct: 1675 SFSP 1678

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 69/202 (34%), Positives = 92/202 (45%), Gaps = 37/202 (18%)
 Frame = +2

Query: 17   SFSPIMSS--------ADAAGRATPGRMTP---GRSPAGRFTPRMSPASP---------- 133
            +FSPIMS         A   G  + G M P   G SP        SP SP          
Sbjct: 1524 NFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSGTSPRPTSPFSTSPTSPFSAGYGSYSP 1583

Query: 134  -----GYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP--------GMGYSPSTPAL 274
                 GY+  SP   GG  G     + +++P+SP++  TSP         MGYSP++P  
Sbjct: 1584 TSPMAGYSPTSPMMDGGRYGA---SSPSFSPSSPSFQPTSPIMRHGAGDSMGYSPTSPTY 1640

Query: 275  AVSSP-GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPS 451
               SP G    YSPTSP        A   ASP SP Y P SP+++  G   A + +Y   
Sbjct: 1641 QPGSPTGGDNHYSPTSP--------AQFGASPTSPLYSPASPSFSPGG---ATSPMYYVG 1689

Query: 452  SPAY-SPFSPN-YAAASSPAYQ 511
            SP + SP SPN + + +SP++Q
Sbjct: 1690 SPQHASPTSPNAHYSPTSPSFQ 1711

[183][TOP]
>UniRef100_Q4UCP5 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
            RepID=Q4UCP5_THEAN
          Length = 1678

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 69/189 (36%), Positives = 85/189 (44%), Gaps = 38/189 (20%)
 Frame = +2

Query: 62   TPGRMTPGRSPAGRFTPR----MSPA--SPGYAAMSPRFGGGLGGGPAGGA--------- 196
            T G ++P  SP    TP     MSP   SP Y ++     GG+G GP+            
Sbjct: 1478 TLGLVSPDSSPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALG 1537

Query: 197  GAYAPASPA--YMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASP- 367
            G+++P SP      TSP    SP +P  A+S P YSP YSPTSP        A    SP 
Sbjct: 1538 GSFSPTSPTSPMSPTSPMSPTSPMSPTSAIS-PVYSPAYSPTSPMSPTSPTSALSPTSPV 1596

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSP-------------AYSPFSPNYA------- 487
             SP Y PTSP  A   T    +  YSP+SP             AYSP +PNY        
Sbjct: 1597 YSPAYSPTSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSPVYSPAYSPTTPNYGYSPTSPL 1656

Query: 488  AASSPAYQP 514
            + +SPAY P
Sbjct: 1657 SPTSPAYSP 1665

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 59/150 (39%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
 Frame = +2

Query: 53   GRATPGRMTPGRSPAGRFTPR--MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
            G  +P   T   SP    +P   MSP S      SP +       P     A +P SP Y
Sbjct: 1538 GSFSPTSPTSPMSPTSPMSPTSPMSPTSAISPVYSPAYSPTSPMSPTSPTSALSPTSPVY 1597

Query: 227  MATSPGMGYSPSTPALAVS--SPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
               SP   YSP++P  A+S  SP YSP YSPTSP++G      A  +   SP Y PT+P 
Sbjct: 1598 ---SPA--YSPTSPTSAMSPTSPVYSPAYSPTSPNLG-----YAPTSPVYSPAYSPTTPN 1647

Query: 401  YARPGTVVAAANVYSPSSPAYS---PFSPN 481
            Y    T     +  SP+SPAYS   PFSPN
Sbjct: 1648 YGYSPT-----SPLSPTSPAYSPTDPFSPN 1672

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 52/145 (35%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAM--SPRFGGGLGGGP 184
            T+  SP    +  +  +    ++P  SPA   T  MSP SP  A    SP +       P
Sbjct: 1546 TSPMSPTSPMSPTSPMSPTSAISPVYSPAYSPTSPMSPTSPTSALSPTSPVYSPAYS--P 1603

Query: 185  AGGAGAYAPASP----AYMATSPGMGYSPSTPALAVSSPGYSP-----GYSPTSPSVGAR 337
                 A +P SP    AY  TSP +GY+P++P   V SP YSP     GYSPTSP     
Sbjct: 1604 TSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSP---VYSPAYSPTTPNYGYSPTSP----- 1655

Query: 338  GGPAAGYASPQSPGYVPTSPAYARP 412
                    SP SP Y PT P    P
Sbjct: 1656 -------LSPTSPAYSPTDPFSPNP 1673

[184][TOP]
>UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
            RepID=Q2HDK0_CHAGB
          Length = 1756

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 70/194 (36%), Positives = 89/194 (45%), Gaps = 38/194 (19%)
 Frame = +2

Query: 53   GRATP---GRMTPGRSPAGRFTPRMSPASP--GYAAMSPR-----FGGGLGGGP------ 184
            G ATP   G         G ++P M   SP  G  + SP      +GGG G         
Sbjct: 1500 GAATPYDTGSPMADNGHLGSYSPTMGNFSPIQGAGSDSPNGFGTEYGGGFGSSTVNPYAT 1559

Query: 185  ---AGGAGAYAPASP-----AYMATSPGMGYSPSTPALAV-----SSPGYSPG---YSPT 316
               A    + +P SP      Y  TSP  GYSP++P L       SSP +SP    +SPT
Sbjct: 1560 SPRATSPFSTSPTSPFSYGGGYSPTSPA-GYSPTSPLLDAGGRYASSPQFSPSSPSFSPT 1618

Query: 317  SPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
            SP +   G P +   SP SP Y P SPA  R  +  +     SP+SP+YSP SP+Y+ AS
Sbjct: 1619 SPMLRP-GSPTSPNYSPTSPSYSPASPAATRHYSPTSPQQFNSPTSPSYSPTSPSYSPAS 1677

Query: 497  ------SPAYQPPS 520
                  SP+Y P S
Sbjct: 1678 PNLHATSPSYSPAS 1691

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 61/183 (33%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRM----TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
            A +SP     DA GR          +P  SP        SP SP Y+  SP +       
Sbjct: 1587 AGYSPTSPLLDAGGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSYS------ 1640

Query: 182  PAGGAGA--YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGP 346
            PA  A    Y+P SP    +     YSP++P+ + +SP     SP YSP SP+       
Sbjct: 1641 PASPAATRHYSPTSPQQFNSPTSPSYSPTSPSYSPASPNLHATSPSYSPASPT------- 1693

Query: 347  AAGYASPQSP-GYVPTSPAYAR-PGTVVAAANV-YSPSSPAYSPFSPNY--AAASSPAYQ 511
                 SP SP  Y PTSP++ R PG  ++  +  YSP+SP++SP +P    +  S   Y 
Sbjct: 1694 ----WSPTSPDAYSPTSPSFHRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPSGGSGDQYS 1749

Query: 512  PPS 520
            P S
Sbjct: 1750 PTS 1752

[185][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E658E
          Length = 1628

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 63/162 (38%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
 Frame = +2

Query: 26   PIMSSADAAGRATPGRMTP--GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            P +S A + G       +P  G SPA   TP  + A+P Y A SP  G G+  G AG   
Sbjct: 1489 PGISVAGSTGMFFGSAPSPMSGMSPA--MTPWNTGATPAYGAWSPSVGSGMTPGAAG--- 1543

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY----ASP 367
             ++P+     A S   G+          SPGYSP +SPT  S G+  GPA+ Y       
Sbjct: 1544 -FSPS-----AASDASGF----------SPGYSPAWSPTPGSPGS-PGPASPYIPSPGGA 1586

Query: 368  QSPGYVPTSPAY--ARPGTVVAAANVYSPSSPAYSPFSPNYA 487
             SP Y PTSPAY    PG     +  YSP+SP+YSP SP+Y+
Sbjct: 1587 MSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSPTSPSYS 1628

[186][TOP]
>UniRef100_Q4N0F9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
            RepID=Q4N0F9_THEPA
          Length = 1681

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 70/191 (36%), Positives = 84/191 (43%), Gaps = 40/191 (20%)
 Frame = +2

Query: 62   TPGRMTPGRSPAGRFTPR----MSPA--SPGYAAMSPRFGGGLGGGPAGGA--------- 196
            T G ++P  SP    TP     MSP   SP Y ++     GG+G GP+            
Sbjct: 1478 TLGLVSPDSSPLSPSTPATKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALG 1537

Query: 197  GAYAPASPA--YMATSPGMGYSPSTPALAVS--SPGYSPGYSPTSPSVGARGGPAAGYAS 364
            G+++P SP      TSP    SP +P    S  SP YSP YSPTSP        A    S
Sbjct: 1538 GSFSPTSPTSPMSPTSPMSPTSPMSPMSPTSAMSPVYSPAYSPTSPMSPTSPANALSPTS 1597

Query: 365  P-QSPGYVPTSPAYARPGTVVAAANVYSPSSP-------------AYSPFSPNYA----- 487
            P  SP Y PTSP  A   T    +  YSP+SP             AYSP SPNY      
Sbjct: 1598 PVYSPAYSPTSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSPVYSPAYSPTSPNYGYSPTS 1657

Query: 488  --AASSPAYQP 514
              + +SPAY P
Sbjct: 1658 PLSPTSPAYSP 1668

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 61/162 (37%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
            T+  SP+  ++  +  +    M+P  + +  ++P  SP SP    MS          P  
Sbjct: 1543 TSPTSPMSPTSPMSPTSPMSPMSPTSAMSPVYSPAYSPTSP----MS----------PTS 1588

Query: 191  GAGAYAPASPAYMATSPGMGYSPSTPALAVS--SPGYSPGYSPTSPSVGARGGPAAGYAS 364
             A A +P SP Y   SP   YSP++P  A+S  SP YSP YSPTSP++G      A  + 
Sbjct: 1589 PANALSPTSPVY---SP--AYSPTSPTSAMSPTSPVYSPAYSPTSPNLG-----YAPTSP 1638

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS---PFSPN 481
              SP Y PTSP Y    T     +  SP+SPAYS   PFSPN
Sbjct: 1639 VYSPAYSPTSPNYGYSPT-----SPLSPTSPAYSPTDPFSPN 1675

[187][TOP]
>UniRef100_B9PMD7 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
            RepID=B9PMD7_TOXGO
          Length = 1892

 Score = 80.9 bits (198), Expect = 5e-14
 Identities = 67/178 (37%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S   A   A+P    PG    GR TP +SP SP    MSP F       P      
Sbjct: 1694 SPAYSPTSALSIASP---VPGVGGDGR-TP-LSPFSPSNNPMSPHFSASTSYSPTSPVQQ 1748

Query: 203  YAPASPAYMATSP-GMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQ 370
              P SP    TSP    YSP++P  + +SP YSP    YSP SPS GA  GP +   + Q
Sbjct: 1749 SNPTSP----TSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPSFTVQ 1804

Query: 371  SPGYVPTSPAYARPGTVV--------------AAANVYSPSSPAY---SPFSPNYAAA 493
            SP Y P+SPA   P + +                 + YSP+SP Y    PFSP+  AA
Sbjct: 1805 SPRYSPSSPAAYSPTSPMPNVAGSPSYEDSHAPGGDTYSPTSPMYEANDPFSPDPFAA 1862

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 56/164 (34%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
 Frame = +2

Query: 62   TPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
            +PG + + GR   G ++P     SP Y+  SP               +Y+P SPAY  TS
Sbjct: 1656 SPGGVGSDGRGRGGSYSPTSPTLSPSYSPSSPP--------------SYSPTSPAYSPTS 1701

Query: 239  --------PGMG------YSPSTPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQ 370
                    PG+G       SP +P+    SP +S    YSPTSP    +  P +   SP 
Sbjct: 1702 ALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSPTSPV--QQSNPTSP-TSPY 1758

Query: 371  SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
            SP Y PTSP Y+        + +YSP+   YSP SP+Y A   P
Sbjct: 1759 SPAYSPTSPRYS------PTSPMYSPTFAPYSPQSPSYGAGQGP 1796

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 67/213 (31%), Positives = 88/213 (41%), Gaps = 47/213 (22%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPR-------MSPASPGYAAMSPRFG------ 163
            SP+   +  + R     ++P   P G F+P        +  +SP Y+  SP+        
Sbjct: 1587 SPLSPLSCFSPRNPLSPLSPSGPPGGVFSPTSPILGSALETSSPSYSPSSPQSAYFQNDG 1646

Query: 164  -----------GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP--- 301
                       GG+G    G  G+Y+P SP     SP   YSPS+P      P YSP   
Sbjct: 1647 SSSAVDMVISPGGVGSDGRGRGGSYSPTSPTL---SPS--YSPSSP------PSYSPTSP 1695

Query: 302  GYSPTS--------PSVGARG----GPAAGYASPQSP------GYVPTSPAYARPGTVVA 427
             YSPTS        P VG  G     P +   +P SP       Y PTSP      T   
Sbjct: 1696 AYSPTSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSPTSPVQQSNPTSPT 1755

Query: 428  A--ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +  +  YSP+SP YSP SP Y+   +P Y P S
Sbjct: 1756 SPYSPAYSPTSPRYSPTSPMYSPTFAP-YSPQS 1787

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 53/176 (30%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S++ +    +P + +   SP   ++P  SP SP Y+  SP +              
Sbjct: 1731 SPHFSASTSYSPTSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFA--------P 1782

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG----YSPTSPSVGARGGPAAGYASPQ 370
            Y+P SP+Y     G G  P +P+  V SP YSP     YSPTSP     G P+  Y    
Sbjct: 1783 YSPQSPSY-----GAGQGPLSPSFTVQSPRYSPSSPAAYSPTSPMPNVAGSPS--YEDSH 1835

Query: 371  SPG---YVPTSPAYARPG----------TVVAAANVYSPSSPAYSPFSPNYAAASS 499
            +PG   Y PTSP Y               V    +V +  SP      PN     S
Sbjct: 1836 APGGDTYSPTSPMYEANDPFSPDPFAAEVVDEVGDVAALESPTEDTLGPNQGRGGS 1891

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 59/199 (29%), Positives = 80/199 (40%), Gaps = 43/199 (21%)
 Frame = +2

Query: 53   GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA 232
            G+ +P + TP RSP        SP SP  +  SPR                 P SP   +
Sbjct: 1573 GKFSPTQQTP-RSPT-------SPLSP-LSCFSPR----------------NPLSPLSPS 1607

Query: 233  TSPGMGYSPSTPALAVSSPGYSPGYSPTSP---------------------SVGARGGPA 349
              PG  +SP++P L  +    SP YSP+SP                      VG+ G   
Sbjct: 1608 GPPGGVFSPTSPILGSALETSSPSYSPSSPQSAYFQNDGSSSAVDMVISPGGVGSDGRGR 1667

Query: 350  AGYASPQS------------PGYVPTSPAYARPGTVVAAANV----------YSPSSPAY 463
             G  SP S            P Y PTSPAY+    +  A+ V           SP SP+ 
Sbjct: 1668 GGSYSPTSPTLSPSYSPSSPPSYSPTSPAYSPTSALSIASPVPGVGGDGRTPLSPFSPSN 1727

Query: 464  SPFSPNYAAASSPAYQPPS 520
            +P SP+++A++S  Y P S
Sbjct: 1728 NPMSPHFSASTS--YSPTS 1744

[188][TOP]
>UniRef100_B6KEC6 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii ME49
            RepID=B6KEC6_TOXGO
          Length = 1892

 Score = 80.9 bits (198), Expect = 5e-14
 Identities = 67/178 (37%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S   A   A+P    PG    GR TP +SP SP    MSP F       P      
Sbjct: 1694 SPAYSPTSALSIASP---VPGVGGDGR-TP-LSPFSPSNNPMSPHFSASTSYSPTSPVQQ 1748

Query: 203  YAPASPAYMATSP-GMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQ 370
              P SP    TSP    YSP++P  + +SP YSP    YSP SPS GA  GP +   + Q
Sbjct: 1749 SNPTSP----TSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPSFTVQ 1804

Query: 371  SPGYVPTSPAYARPGTVV--------------AAANVYSPSSPAY---SPFSPNYAAA 493
            SP Y P+SPA   P + +                 + YSP+SP Y    PFSP+  AA
Sbjct: 1805 SPRYSPSSPAAYSPTSPMPNVAGSPSYEDSHAPGGDTYSPTSPMYEANDPFSPDPFAA 1862

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 55/164 (33%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
 Frame = +2

Query: 62   TPGRM-TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
            +PG + + GR   G ++P     SP Y+  +P               +Y+P SPAY  TS
Sbjct: 1656 SPGGVGSDGRGRGGSYSPTSPTLSPSYSPSAPP--------------SYSPTSPAYSPTS 1701

Query: 239  --------PGMG------YSPSTPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQ 370
                    PG+G       SP +P+    SP +S    YSPTSP    +  P +   SP 
Sbjct: 1702 ALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSPTSPV--QQSNPTSP-TSPY 1758

Query: 371  SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
            SP Y PTSP Y+        + +YSP+   YSP SP+Y A   P
Sbjct: 1759 SPAYSPTSPRYS------PTSPMYSPTFAPYSPQSPSYGAGQGP 1796

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 53/176 (30%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP  S++ +    +P + +   SP   ++P  SP SP Y+  SP +              
Sbjct: 1731 SPHFSASTSYSPTSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFA--------P 1782

Query: 203  YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG----YSPTSPSVGARGGPAAGYASPQ 370
            Y+P SP+Y     G G  P +P+  V SP YSP     YSPTSP     G P+  Y    
Sbjct: 1783 YSPQSPSY-----GAGQGPLSPSFTVQSPRYSPSSPAAYSPTSPMPNVAGSPS--YEDSH 1835

Query: 371  SPG---YVPTSPAYARPG----------TVVAAANVYSPSSPAYSPFSPNYAAASS 499
            +PG   Y PTSP Y               V    +V +  SP      PN     S
Sbjct: 1836 APGGDTYSPTSPMYEANDPFSPDPFAAEVVDEVGDVAALESPTEDTLGPNQGRGGS 1891

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 67/213 (31%), Positives = 87/213 (40%), Gaps = 47/213 (22%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPR-------MSPASPGYAAMSPRFG------ 163
            SP+   +  + R     ++P   P G F+P        +  +SP Y+  SP+        
Sbjct: 1587 SPLSPLSCFSPRNPLSPLSPSGPPGGVFSPTSPILGSALETSSPSYSPSSPQSAYFQNDG 1646

Query: 164  -----------GGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP--- 301
                       GG+G    G  G+Y+P SP     SP   YSPS P      P YSP   
Sbjct: 1647 SSSAVDMVISPGGVGSDGRGRGGSYSPTSPTL---SPS--YSPSAP------PSYSPTSP 1695

Query: 302  GYSPTS--------PSVGARG----GPAAGYASPQSP------GYVPTSPAYARPGTVVA 427
             YSPTS        P VG  G     P +   +P SP       Y PTSP      T   
Sbjct: 1696 AYSPTSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSYSPTSPVQQSNPTSPT 1755

Query: 428  A--ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +  +  YSP+SP YSP SP Y+   +P Y P S
Sbjct: 1756 SPYSPAYSPTSPRYSPTSPMYSPTFAP-YSPQS 1787

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 59/199 (29%), Positives = 80/199 (40%), Gaps = 43/199 (21%)
 Frame = +2

Query: 53   GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA 232
            G+ +P + TP RSP        SP SP  +  SPR                 P SP   +
Sbjct: 1573 GKFSPTQQTP-RSPT-------SPLSP-LSCFSPR----------------NPLSPLSPS 1607

Query: 233  TSPGMGYSPSTPALAVSSPGYSPGYSPTSP---------------------SVGARGGPA 349
              PG  +SP++P L  +    SP YSP+SP                      VG+ G   
Sbjct: 1608 GPPGGVFSPTSPILGSALETSSPSYSPSSPQSAYFQNDGSSSAVDMVISPGGVGSDGRGR 1667

Query: 350  AGYASPQS------------PGYVPTSPAYARPGTVVAAANV----------YSPSSPAY 463
             G  SP S            P Y PTSPAY+    +  A+ V           SP SP+ 
Sbjct: 1668 GGSYSPTSPTLSPSYSPSAPPSYSPTSPAYSPTSALSIASPVPGVGGDGRTPLSPFSPSN 1727

Query: 464  SPFSPNYAAASSPAYQPPS 520
            +P SP+++A++S  Y P S
Sbjct: 1728 NPMSPHFSASTS--YSPTS 1744

[189][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
            RepID=A8N128_COPC7
          Length = 1642

 Score = 80.9 bits (198), Expect = 5e-14
 Identities = 62/164 (37%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A   +     S   AG  +PG   PG SP+       SP SPG    SP       G P 
Sbjct: 1475 ANFQYMSFPQSPHGAGGMSPG---PGYSPSS--PNAYSPTSPGMVPRSPY------GAPT 1523

Query: 188  GGAGAYAPASPAY----MATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGP 346
                     SP Y     ATSP   YSP++P   ++SP YSP   G+SPTSP+  +   P
Sbjct: 1524 SPFSNQYATSPFYDSRRQATSPT--YSPTSPIAGLTSPAYSPTSPGFSPTSPNGYSPQSP 1581

Query: 347  AAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
               + SP SP Y P SP+Y+       A+  YSPSSP +SP SP
Sbjct: 1582 --NFGSPASPNYSPASPSYSP----APASPNYSPSSPTWSPTSP 1619

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 74/205 (36%), Positives = 90/205 (43%), Gaps = 42/205 (20%)
 Frame = +2

Query: 32   MSSADAAGRATPGRM--TP---------------GRSPAGRFTPRMSPASPGYA------ 142
            M +A   G  TPG++  TP               G S    F+P  S  +   A      
Sbjct: 1422 MLAAQIDGAMTPGQVAITPYATNSPDWIQDEFFKGDSGPSAFSPLASNGAEDTANFQYMS 1481

Query: 143  -AMSPRFGGGLGGGPAGGAGAYAPASP-AYMATSPGMGYSPSTPALAVSSP--------- 289
               SP   GG+  GP      Y+P+SP AY  TSPGM   P +P  A +SP         
Sbjct: 1482 FPQSPHGAGGMSPGPG-----YSPSSPNAYSPTSPGM--VPRSPYGAPTSPFSNQYATSP 1534

Query: 290  -------GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSP 448
                     SP YSPTSP  G    PA    SP SPG+ PTSP    P     + N  SP
Sbjct: 1535 FYDSRRQATSPTYSPTSPIAGLTS-PAY---SPTSPGFSPTSPNGYSP----QSPNFGSP 1586

Query: 449  SSPAYSPFSPNYA-AASSPAYQPPS 520
            +SP YSP SP+Y+ A +SP Y P S
Sbjct: 1587 ASPNYSPASPSYSPAPASPNYSPSS 1611

[190][TOP]
>UniRef100_C6F0A2 RNA polymerase II (Fragment) n=1 Tax=Plasmodium falciparum
           RepID=C6F0A2_PLAFA
          Length = 223

 Score = 80.1 bits (196), Expect = 9e-14
 Identities = 57/142 (40%), Positives = 72/142 (50%), Gaps = 8/142 (5%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
           +P+ SP SP Y+  SP+               Y+P SP Y  TSP   YSP++P  + +S
Sbjct: 44  SPKYSPTSPKYSPTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTS 86

Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV---VAAANV--Y 442
           P YSP    YSPTSP             SP SP Y PTSP Y+    V   +A+ N   Y
Sbjct: 87  PKYSPTSPKYSPTSPKY-----------SPTSPKYSPTSPKYSPTSPVAQNIASPNYSPY 135

Query: 443 SPSSPAYSPFSPNYAAASSPAY 508
           S +SP +SP SP Y + SSP Y
Sbjct: 136 SITSPKFSPTSPAY-SISSPVY 156

 Score = 77.4 bits (189), Expect = 6e-13
 Identities = 55/147 (37%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYS 256
           +P  SP    +P+ SP SP Y+  SP++        +  +  Y+P SP Y  TSP   YS
Sbjct: 44  SPKYSPT---SPKYSPTSPKYSPTSPKY--------SPTSPKYSPTSPKYSPTSPK--YS 90

Query: 257 PSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQ-------SPGYVPTSPAYA 406
           P++P  + +SP YSP    YSPTSP        A   ASP        SP + PTSPAY+
Sbjct: 91  PTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYS 150

Query: 407 RPGTVV---AAANVYSPSSPAYSPFSP 478
               V       N + P SPAY   SP
Sbjct: 151 ISSPVYDKSGVVNAHQPMSPAYILQSP 177

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 53/134 (39%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
 Frame = +2

Query: 128 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG- 304
           SP Y+  SP+               Y+P SP Y  TSP   YSP++P  + +SP YSP  
Sbjct: 37  SPVYSVTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTSPKYSPTS 79

Query: 305 --YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
             YSPTSP             SP SP Y PTSP Y+        +  YSP+SP YSP SP
Sbjct: 80  PKYSPTSPKY-----------SPTSPKYSPTSPKYS------PTSPKYSPTSPKYSPTSP 122

Query: 479 NYAAASSPAYQPPS 520
                +SP Y P S
Sbjct: 123 VAQNIASPNYSPYS 136

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 50/126 (39%), Positives = 63/126 (50%), Gaps = 20/126 (15%)
 Frame = +2

Query: 203 YAPASPAYMA-------TSP---------GMGYSPSTPALAVSSPGY---SPGYSPTSPS 325
           Y+P SP Y A       TSP            Y+  +P  +V+SP Y   SP YSPTSP 
Sbjct: 1   YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSP- 59

Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSPAYSPFSPNYAAASSP 502
              +  P +   SP SP Y PTSP Y+      +  +  YSP+SP YSP SP Y + +SP
Sbjct: 60  ---KYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKY-SPTSP 115

Query: 503 AYQPPS 520
            Y P S
Sbjct: 116 KYSPTS 121

[191][TOP]
>UniRef100_C6F1E9 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
           RepID=C6F1E9_PLAVI
          Length = 225

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 58/146 (39%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPGMG--YSPSTPALAVSS 286
           SP SP Y   +P  GGG   G  G    Y+P SP       +P M   +S  +P  +V+S
Sbjct: 2   SPTSPTYHLTNPASGGG-SSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60

Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
           P YSP    YSPTSP       P +   SP SP Y PTSP Y+        +  YSP+SP
Sbjct: 61  PKYSPTSPKYSPTSPKYS----PTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSP 110

Query: 458 AYSPFSPNYAAA-------SSPAYQP 514
            YSP SP Y+ +       SSP Y P
Sbjct: 111 KYSPTSPQYSPSSPVPNNPSSPHYSP 136

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
           +P+ SP SP Y+  SP++        +  +  Y+P SP Y  TSP   YSP++P  + +S
Sbjct: 60  SPKYSPTSPKYSPTSPKY--------SPTSPKYSPTSPKYSPTSPK--YSPTSPKYSPTS 109

Query: 287 PGYSPGYSPTSPSVGARGGPAAGYASP---QSPGYVPTSPAYARPGTVV-----AAANVY 442
           P YSP     SPS      P++ + SP    SP + PTSPAY+    V      A +   
Sbjct: 110 PKYSPTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQ 169

Query: 443 SPSSPAYSPFSP 478
            P SPAY   SP
Sbjct: 170 HPLSPAYILQSP 181

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 51/134 (38%), Positives = 63/134 (47%), Gaps = 28/134 (20%)
 Frame = +2

Query: 203 YAPASPAYMATSPGMG------------YSPSTPA-------------LAVSSPGY---S 298
           Y+P SP Y  T+P  G            YSP++P               +V SP Y   S
Sbjct: 1   YSPTSPTYHLTNPASGGGSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60

Query: 299 PGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
           P YSPTSP    +  P +   SP SP Y PTSP Y+        +  YSP+SP YSP SP
Sbjct: 61  PKYSPTSP----KYSPTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSPKYSPTSP 110

Query: 479 NYAAASSPAYQPPS 520
            Y + +SP Y P S
Sbjct: 111 KY-SPTSPQYSPSS 123

[192][TOP]
>UniRef100_UPI000069EED3 UPI000069EED3 related cluster n=1 Tax=Xenopus (Silurana) tropicalis
           RepID=UPI000069EED3
          Length = 216

 Score = 77.0 bits (188), Expect = 7e-13
 Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 12/166 (7%)
 Frame = +2

Query: 59  ATPGRMTPGRSPAGRFTPR----MSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
           +TPG +TP  S  G  TP     ++P++PGY  ++P   G L        G   P++P Y
Sbjct: 63  STPGYLTP--STPGYLTPSTPGYLTPSTPGY--LTPSTPGYL---TPSTPGYLTPSTPGY 115

Query: 227 MATSPGMGYSPSTPA-LAVSSPGY----SPGY-SPTSPSVGARGGPAAGYASPQSPGYV- 385
           +  S     +PSTP  L  S+PGY    +PGY +P++P          GY +P +PGY+ 
Sbjct: 116 LTLSTPGYLTPSTPGYLTPSTPGYLTPRTPGYLTPSTP----------GYLTPSTPGYLT 165

Query: 386 PTSPAYARPGTVVAAANVYSPSSPAY-SPFSPNYAAASSPAYQPPS 520
           P++P Y  P T        +PS+P Y +P +P Y   S+P Y  PS
Sbjct: 166 PSTPGYLTPST----PGYLTPSTPGYLTPSTPGYLTPSTPGYLTPS 207

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
 Frame = +2

Query: 197 GAYAPASPAYMATSPGMGYSPSTPA-LAVSSPGY----SPGY-SPTSPSVGARGGPAAGY 358
           G   P++P Y+  S     +PSTP  L  S+PGY    +PGY +P++P       P  GY
Sbjct: 18  GYLTPSTPGYLTPSTPGYLTPSTPGYLTPSTPGYLTPSTPGYLTPSTPGYLTPSTP--GY 75

Query: 359 ASPQSPGYV-PTSPAYARPGTVVAAANVYSPSSPAY-SPFSPNYAAASSPAYQPPS 520
            +P +PGY+ P++P Y  P T        +PS+P Y +P +P Y   S+P Y  PS
Sbjct: 76  LTPSTPGYLTPSTPGYLTPST----PGYLTPSTPGYLTPSTPGYLTLSTPGYLTPS 127

[193][TOP]
>UniRef100_C6F1F0 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
           RepID=C6F1F0_PLAVI
          Length = 218

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 57/146 (39%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPGMG--YSPSTPALAVSS 286
           SP SP Y   +P  GGG   G  G    Y+P SP       +P M   +S  +P  +V+S
Sbjct: 2   SPTSPTYHLTNPASGGG-SSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60

Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP 457
           P YSP    YSPTSP             SP SP Y PTSP Y+        +  YSP+SP
Sbjct: 61  PKYSPTSPKYSPTSPKY-----------SPTSPKYSPTSPKYS------PTSPKYSPTSP 103

Query: 458 AYSPFSPNYAAA-------SSPAYQP 514
            YSP SP Y+ +       SSP Y P
Sbjct: 104 KYSPTSPQYSPSSPVPNNPSSPHYSP 129

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
           +P+ SP SP Y+  SP+               Y+P SP Y  TSP   YSP++P  + +S
Sbjct: 60  SPKYSPTSPKYSPTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTS 102

Query: 287 PGYSPGYSPTSPSVGARGGPAAGYASP---QSPGYVPTSPAYARPGTVV-----AAANVY 442
           P YSP     SPS      P++ + SP    SP + PTSPAY+    V      A +   
Sbjct: 103 PKYSPTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQ 162

Query: 443 SPSSPAYSPFSP 478
            P SPAY   SP
Sbjct: 163 HPLSPAYILQSP 174

[194][TOP]
>UniRef100_B3L428 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
            RepID=B3L428_PLAKH
          Length = 2353

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 58/144 (40%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
 Frame = +2

Query: 104  FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT--SPGMG--YSPSTPA 271
            ++P  SP SP Y   S    GG   G       Y+P SP       +P M   +S  +PA
Sbjct: 2132 YSPSYSPTSPTYHLSSNVNAGG-SSGLNDTKAFYSPTSPKNQMDEMNPNMMKYHSVLSPA 2190

Query: 272  LAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVY 442
             AV+SP YSP    YSPTSP       P +   SP SP Y PTSP Y+        +  Y
Sbjct: 2191 YAVTSPKYSPTSPKYSPTSPKYM----PTSPKYSPTSPKYSPTSPKYS------PTSPKY 2240

Query: 443  SPSSPAYSPFSPNYAAASSPAYQP 514
            SP+SP YSP SP   + SSP Y P
Sbjct: 2241 SPTSPQYSPTSPVPNSPSSPHYSP 2264

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 51/130 (39%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
 Frame = +2

Query: 119  SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
            S  SP YA  SP++        +  +  Y+P SP YM TSP   YSP++P  + +SP YS
Sbjct: 2185 SVLSPAYAVTSPKY--------SPTSPKYSPTSPKYMPTSPK--YSPTSPKYSPTSPKYS 2234

Query: 299  PG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
            P    YSPTSP             SP SP  VP SP+         A+  +SP+SPAYS 
Sbjct: 2235 PTSPKYSPTSPQY-----------SPTSP--VPNSPSSPHYSPYAIASPKFSPTSPAYSI 2281

Query: 470  FSPNYAAASS 499
             SP Y  +S+
Sbjct: 2282 SSPVYDQSSN 2291

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 54/144 (37%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
 Frame = +2

Query: 89   SPAGRFT-PRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPST 265
            SPA   T P+ SP SP Y+  SP+               Y P SP Y  TSP   YSP++
Sbjct: 2188 SPAYAVTSPKYSPTSPKYSPTSPK---------------YMPTSPKYSPTSPK--YSPTS 2230

Query: 266  PALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN 436
            P  + +SP YSP    YSPTSP   +   P     +  SP + PTSPAY+       ++ 
Sbjct: 2231 PKYSPTSPKYSPTSPQYSPTSPVPNSPSSPHYSPYAIASPKFSPTSPAYS------ISSP 2284

Query: 437  VYSPSSPAYS----PFSPNYAAAS 496
            VY  SS A +    P SP Y   S
Sbjct: 2285 VYDQSSNARNRNQHPLSPAYILQS 2308

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 59/201 (29%), Positives = 77/201 (38%), Gaps = 50/201 (24%)
 Frame = +2

Query: 68   GRMTPGRSPAGR-------FTP----RMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAP 211
            G+ +P +SP          F+P       P  PG    SP+         A      ++P
Sbjct: 2039 GKFSPTQSPRSPTSVIHSPFSPFDNNNQQPLDPGMMLFSPKNNQNNSSSMAMMNYNVFSP 2098

Query: 212  ASPAYMATSPGMGYSPSTPALAVSSPG-------YSPGYSPTSP----SVGARGGPAAG- 355
             +      SP M YSP+ P L + SP        YSP YSPTSP    S     G ++G 
Sbjct: 2099 KANLDNIHSPAMLYSPNRP-LDIFSPKQQTQNNIYSPSYSPTSPTYHLSSNVNAGGSSGL 2157

Query: 356  -------------------------YASPQSPGYVPTSPAYARPGTVVAAAN-VYSPSSP 457
                                     Y S  SP Y  TSP Y+      +  +  Y P+SP
Sbjct: 2158 NDTKAFYSPTSPKNQMDEMNPNMMKYHSVLSPAYAVTSPKYSPTSPKYSPTSPKYMPTSP 2217

Query: 458  AYSPFSPNYAAASSPAYQPPS 520
             YSP SP Y + +SP Y P S
Sbjct: 2218 KYSPTSPKY-SPTSPKYSPTS 2237

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 50/170 (29%), Positives = 68/170 (40%), Gaps = 13/170 (7%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A A  SP  S        T  +  P        +P+ SP SP Y+  SP+          
Sbjct: 2190 AYAVTSPKYSPTSPKYSPTSPKYMPTSPKYSPTSPKYSPTSPKYSPTSPK---------- 2239

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTP---ALAVSSPGY---SPGYSPTSPSVGARGGPA 349
                 Y+P SP Y  TSP +  SPS+P     A++SP +   SP YS +SP         
Sbjct: 2240 -----YSPTSPQYSPTSP-VPNSPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSSNAR 2293

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS-------PFSP 478
                 P SP Y+  SP   +    +   +V+SP   A +       PFSP
Sbjct: 2294 NRNQHPLSPAYILQSPVQVKQH--IQDVSVFSPIQQANADEAQNDDPFSP 2341

[195][TOP]
>UniRef100_A5K7P4 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
            RepID=A5K7P4_PLAVI
          Length = 2379

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 58/150 (38%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
 Frame = +2

Query: 104  FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPGMG--YSPSTPA 271
            ++P  SP SP Y   +P  GGG   G  G    Y+P SP       +P M   +S  +P 
Sbjct: 2165 YSPSYSPTSPTYHLTNPASGGG-SSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPV 2223

Query: 272  LAVSSPGYSPG---YSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPGTVV--A 427
             +V+SP YSP    YSPTSP       +  P +   SP SP Y PTSP Y+    V    
Sbjct: 2224 YSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPSSPVPNNP 2283

Query: 428  AANVYSP---SSPAYSPFSPNYAAASSPAY 508
            ++  YSP   +SP +SP SP Y + SSP Y
Sbjct: 2284 SSPHYSPYAIASPKFSPTSPAY-SISSPVY 2312

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
 Frame = +2

Query: 119  SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
            S  SP Y+  SP++        +  +  Y+P SP Y  TSP   YSP++P  + +SP YS
Sbjct: 2218 SVVSPVYSVTSPKY--------SPTSPKYSPTSPKYSPTSPK--YSPTSPKYSPTSPKYS 2267

Query: 299  PGYSPTSPSVGARGGPAAGYASP---QSPGYVPTSPAYARPGTVV-----AAANVYSPSS 454
            P     SPS      P++ + SP    SP + PTSPAY+    V      A +    P S
Sbjct: 2268 PTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQHPLS 2327

Query: 455  PAYSPFSP 478
            PAY   SP
Sbjct: 2328 PAYILQSP 2335

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 61/209 (29%), Positives = 77/209 (36%), Gaps = 68/209 (32%)
 Frame = +2

Query: 98   GRFTPRMSPASPGYAAMSP-----------------------RFGGGLGGGPAGGAGAYA 208
            G+F+P  SP SP     SP                         G             ++
Sbjct: 2071 GKFSPTQSPKSPTSVIHSPFSPFDNHNQQALDPSMLFSPKNNNVGSSSNSMSMMNYNVFS 2130

Query: 209  PASPAYMATSPGMGYSPSTPALAVSSPG-------YSPGYSPTSPSV----GARGGPAAG 355
            P +      SP M YSP+  AL + SP        YSP YSPTSP+      A GG ++G
Sbjct: 2131 PKANLNSIQSPAMLYSPNR-ALDLFSPKQQTQNNIYSPSYSPTSPTYHLTNPASGGGSSG 2189

Query: 356  ------YASP---------------------------QSPGYVPTSPAYARPGTVVAAAN 436
                  Y SP                            SP Y PTSP Y+      +  +
Sbjct: 2190 LNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTSPKYSPTSPKYSPTSPKYSPTS 2249

Query: 437  -VYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              YSP+SP YSP SP Y + +SP Y P S
Sbjct: 2250 PKYSPTSPKYSPTSPKY-SPTSPQYSPSS 2277

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
            SP+ S        T  + +P        +P+ SP SP Y+  SP+               
Sbjct: 2221 SPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK--------------- 2265

Query: 203  YAPASPAYMATSPGMGYSPSTP---ALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
            Y+P SP Y  +SP +  +PS+P     A++SP +   SP YS +SP     G   +    
Sbjct: 2266 YSPTSPQYSPSSP-VPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQH 2324

Query: 365  PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS-------PFSP 478
            P SP Y+  SP   +    +   +V+SP   A +       PFSP
Sbjct: 2325 PLSPAYILQSPVQVKQH--IQDVSVFSPIQQANAEEVQNDDPFSP 2367

[196][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
            RepID=Q8MX30_NAEGR
          Length = 1590

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 60/152 (39%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
 Frame = +2

Query: 62   TPGRMTP-GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
            T G MTP GR+P                  SP + GG    P   A +   +SP    TS
Sbjct: 1488 TQGAMTPLGRTP------------------SPEYQGGFSPSPYNSAFSPVASSP----TS 1525

Query: 239  PGM--GYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
            PG   GYSPS+P            YSPTSP+            SP SP Y PTSPAY+  
Sbjct: 1526 PGHQGGYSPSSPG----------NYSPTSPAY-----------SPSSPNYSPTSPAYS-- 1562

Query: 413  GTVVAAANVYSPSSPAYSPFSPNYAAASSPAY 508
                  +  YSP+SPAYSP SPNY + +SPAY
Sbjct: 1563 ----PTSPNYSPTSPAYSPTSPNY-SPTSPAY 1589

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 53/135 (39%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
 Frame = +2

Query: 143  AMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPT-- 316
            A +P    GL     GG      A+P +   S        TP     SP Y  G+SP+  
Sbjct: 1458 ATTPYHTSGLATPYHGGV-----ATPYHGGASSPWTQGAMTPLGRTPSPEYQGGFSPSPY 1512

Query: 317  ----SPSVGARGGPA--AGYASPQSPG-YVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
                SP   +   P    GY SP SPG Y PTSPAY+       ++  YSP+SPAYSP S
Sbjct: 1513 NSAFSPVASSPTSPGHQGGY-SPSSPGNYSPTSPAYS------PSSPNYSPTSPAYSPTS 1565

Query: 476  PNYAAASSPAYQPPS 520
            PNY + +SPAY P S
Sbjct: 1566 PNY-SPTSPAYSPTS 1579

[197][TOP]
>UniRef100_Q17BN0 Putative uncharacterized protein n=1 Tax=Aedes aegypti
           RepID=Q17BN0_AEDAE
          Length = 729

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
 Frame = +2

Query: 35  SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPAGGAGAYAP 211
           + ++  G   PG   P    A  +    +PA+P Y A  +P +G      PA GA A AP
Sbjct: 213 AKSEDGGVVQPGYGAPAAPAAPAYGSHAAPAAPAYGAPAAPAYGA--PAAPAYGAHA-AP 269

Query: 212 ASPAY---MATSPGMGYSPSTPA----LAVSSPGYSPGYSPTSPSVGARGGPAAG-YASP 367
           A+PAY    A + G   +P+ PA     A ++P Y    +P +P+ GA   PA G +A+P
Sbjct: 270 AAPAYGAHAAPAYGSHAAPAAPAYGAHAAPAAPAYGAHAAPAAPAYGAHAAPAYGAHAAP 329

Query: 368 QSPGY----VPTSPAYARPGTVVAAANVY----SPSSPAYSPF-SPNYAAASSPAY 508
            +P Y     P   A+A PG    AA+ Y    +P+ P Y    +P Y A ++P Y
Sbjct: 330 AAPAYGAHAAPAYGAHAGPGCATHAASAYGAHIAPAGPVYGAHAAPAYGAHAAPVY 385

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 53/147 (36%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFG---GGLGGGPAGGAGAY----APASPAYMATSPGMGYSPSTPAL- 274
           S  S GY A S   G    G G   A  A AY    APA+PAY A        P+ PA  
Sbjct: 205 SEGSEGYGAKSEDGGVVQPGYGAPAAPAAPAYGSHAAPAAPAYGA--------PAAPAYG 256

Query: 275 AVSSPGYSPGYSPTSPSVGARGGPAAG-YASPQSPGY----VPTSPAYARPGTVVAAANV 439
           A ++P Y    +P +P+ GA   PA G +A+P +P Y     P +PAY       A A  
Sbjct: 257 APAAPAYGAHAAPAAPAYGAHAAPAYGSHAAPAAPAYGAHAAPAAPAYGAHAAPAAPA-Y 315

Query: 440 YSPSSPAY----SPFSPNYAAASSPAY 508
            + ++PAY    +P +P Y A ++PAY
Sbjct: 316 GAHAAPAYGAHAAPAAPAYGAHAAPAY 342

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
 Frame = +2

Query: 179 GPAG----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP 346
           GP G        Y    PA   +    GY   +    V  PGY    +P +P+ G+   P
Sbjct: 183 GPTGIHCDNCHIYHGDKPAEAKSEGSEGYGAKSEDGGVVQPGYGAPAAPAAPAYGSHAAP 242

Query: 347 AA-GYASPQSPGY-VPTSPAY------ARPGTVVAAANVY----SPSSPAY----SPFSP 478
           AA  Y +P +P Y  P +PAY      A P     AA  Y    +P++PAY    +P +P
Sbjct: 243 AAPAYGAPAAPAYGAPAAPAYGAHAAPAAPAYGAHAAPAYGSHAAPAAPAYGAHAAPAAP 302

Query: 479 NYAAASSPA 505
            Y A ++PA
Sbjct: 303 AYGAHAAPA 311

[198][TOP]
>UniRef100_O77375 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
            RepID=O77375_PLAF7
          Length = 2457

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 50/130 (38%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
 Frame = +2

Query: 107  TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
            +P+ SP SP Y+  SP++        +  +  Y+P SP Y  TSP   YSP++P  + +S
Sbjct: 2292 SPKYSPTSPKYSPTSPKY--------SPTSPKYSPTSPKYSPTSPK--YSPTSPKYSPTS 2341

Query: 287  PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVYSP 448
            P YSP    YSPTSP       P     S  SP + PTSPAY+    V       N + P
Sbjct: 2342 PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQP 2401

Query: 449  SSPAYSPFSP 478
             SPAY   SP
Sbjct: 2402 MSPAYILQSP 2411

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 56/149 (37%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
 Frame = +2

Query: 104  FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA---YAPASPAYMATSPGMGYSPSTPAL 274
            ++P  SP SP Y A +  +                 Y   SP Y  TSP   YSP++P  
Sbjct: 2245 YSPSYSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPK--YSPTSPKY 2302

Query: 275  AVSSPGYSPG---YSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPGTV---VA 427
            + +SP YSP    YSPTSP       +  P +   SP SP Y PTSP Y+    V   +A
Sbjct: 2303 SPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIA 2362

Query: 428  AANV--YSPSSPAYSPFSPNYAAASSPAY 508
            + N   YS +SP +SP SP Y + SSP Y
Sbjct: 2363 SPNYSPYSITSPKFSPTSPAY-SISSPVY 2390

[199][TOP]
>UniRef100_Q54LJ4 Type A von Willebrand factor domain-containing protein n=1
            Tax=Dictyostelium discoideum RepID=Q54LJ4_DICDI
          Length = 2563

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 61/166 (36%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
 Frame = +2

Query: 89   SPAGRFTPRMSPASPGYAAMSPRFG---GGLGG--GPAGGAGAYAPASPAYM-ATSPGMG 250
            SP G      S    G ++     G   GG GG  G A G GA  P  P    +TS G G
Sbjct: 1773 SPEGNIRSNNSSRGRGGSSRGGSIGSSRGGRGGNIGTAFGRGAPPPPQPPPPPSTSLGRG 1832

Query: 251  -------------YSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGY 382
                         YSP++P    +SP YSP    YSPTSPS            SP SP Y
Sbjct: 1833 APPPSLFFQASQPYSPTSPFYIPTSPSYSPTSPSYSPTSPSY-----------SPTSPSY 1881

Query: 383  VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             PTSP+Y+      + +  YSP SP+Y+P S  Y A + P+Y P S
Sbjct: 1882 SPTSPSYSTSPLYASTSQSYSPVSPSYTPTSLLY-APTIPSYSPVS 1926

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 53/150 (35%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
 Frame = +2

Query: 47   AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
            A GR  P    P   P+        P S  + A  P                Y+P SP Y
Sbjct: 1810 AFGRGAPPPPQPPPPPSTSLGRGAPPPSLFFQASQP----------------YSPTSPFY 1853

Query: 227  MATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
            + TSP   YSP++P+ + +SP YSP    YSPTSPS       +  YAS  S  Y P SP
Sbjct: 1854 IPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYST----SPLYAST-SQSYSPVSP 1906

Query: 398  AYARPGTVVAAANVYSPSSPAYSPFSPNYA 487
            +Y         + +Y+P+ P+YSP SP+YA
Sbjct: 1907 SYT------PTSLLYAPTIPSYSPVSPSYA 1930

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 49/145 (33%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
 Frame = +2

Query: 68   GRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM 247
            GR  P  S   + +   SP SP Y   SP               +Y+P SP+Y  TSP  
Sbjct: 1830 GRGAPPPSLFFQASQPYSPTSPFYIPTSP---------------SYSPTSPSYSPTSPS- 1873

Query: 248  GYSPSTPALAVSSPGYSPG---------YSPTSPSVGARG---GPAAGYASPQSPGYVPT 391
             YSP++P+ + +SP YS           YSP SPS         P     SP SP Y PT
Sbjct: 1874 -YSPTSPSYSPTSPSYSTSPLYASTSQSYSPVSPSYTPTSLLYAPTIPSYSPVSPSYAPT 1932

Query: 392  SPAYARPGTVVAAANVYSPSSPAYS 466
             P      + +     YSPSSP++S
Sbjct: 1933 KP------SKLPVLTSYSPSSPSFS 1951

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 48/167 (28%), Positives = 68/167 (40%), Gaps = 35/167 (20%)
 Frame = +2

Query: 77   TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP--AGGAGAYAPASPAYMATSPGMG 250
            +P  SP    +P  SP SP Y+  SP +       P  A  + +Y+P SP+Y  TS  + 
Sbjct: 1864 SPSYSPT---SPSYSPTSPSYSPTSPSYSTS----PLYASTSQSYSPVSPSYTPTS--LL 1914

Query: 251  YSPSTPALAVSSPGYSP----------GYSPTSPSVGARGGP---------------AAG 355
            Y+P+ P+ +  SP Y+P           YSP+SPS                       AG
Sbjct: 1915 YAPTIPSYSPVSPSYAPTKPSKLPVLTSYSPSSPSFSKSKAKEESTLSEINLPSKPMVAG 1974

Query: 356  YA--------SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPF 472
            Y+        S  +P   PT P          + NV+SP+ PA   F
Sbjct: 1975 YSRMSTVSFSSTPTPTPTPTPPPLPNAPRPSVSTNVFSPAPPAPQVF 2021

[200][TOP]
>UniRef100_C6F1F2 RNA polymerase II (Fragment) n=1 Tax=Plasmodium cynomolgi
           RepID=C6F1F2_9APIC
          Length = 232

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 52/133 (39%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
           S  SP Y+  SP++        +  +  Y+P SP Y+ TSP   YSP++P  + +SP YS
Sbjct: 50  SVVSPVYSVTSPKY--------SPTSPKYSPTSPKYLPTSPK--YSPTSPKYSPTSPKYS 99

Query: 299 PG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
           P    YSPTSP       P +   SP SP Y PTSP    P +     + Y+ +SP +SP
Sbjct: 100 PTSPKYSPTSPKYS----PTSPKYSPTSPQYSPTSPVPNNPSS--PHYSPYAIASPKFSP 153

Query: 470 FSPNYAAASSPAY 508
            SP Y + SSP Y
Sbjct: 154 TSPAY-SISSPVY 165

 Score = 73.9 bits (180), Expect = 6e-12
 Identities = 47/107 (43%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
 Frame = +2

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
           ++  SP Y  TSP   YSP++P  + +SP Y   SP YSPTSP       P +   SP S
Sbjct: 49  HSVVSPVYSVTSPK--YSPTSPKYSPTSPKYLPTSPKYSPTSPKYS----PTSPKYSPTS 102

Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           P Y PTSP Y+        +  YSP+SP YSP SP     SSP Y P
Sbjct: 103 PKYSPTSPKYS------PTSPKYSPTSPQYSPTSPVPNNPSSPHYSP 143

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 51/134 (38%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGP--AGGAGAYAPASPAYMATSPGMGYSPSTPALAV 280
           +P+ SP SP Y+  SP++   L   P  +  +  Y+P SP Y  TSP   YSP++P  + 
Sbjct: 60  SPKYSPTSPKYSPTSPKY---LPTSPKYSPTSPKYSPTSPKYSPTSPK--YSPTSPKYSP 114

Query: 281 SSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV-----AAAN 436
           +SP YSP    YSPTSP       P     +  SP + PTSPAY+    V      A   
Sbjct: 115 TSPKYSPTSPQYSPTSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARNK 174

Query: 437 VYSPSSPAYSPFSP 478
              P SPAY   SP
Sbjct: 175 SQHPLSPAYILQSP 188

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S        T  + +P        +P+ SP SP Y+  SP++        +  +  
Sbjct: 67  SPKYSPTSPKYLPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKY--------SPTSPK 118

Query: 203 YAPASPAYMATSPGMGYSPSTP---ALAVSSPGYSP---GYSPTSPSVGARGGPAAGYAS 364
           Y+P SP Y  TSP +  +PS+P     A++SP +SP    YS +SP     G        
Sbjct: 119 YSPTSPQYSPTSP-VPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARNKSQH 177

Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS-------PFSP 478
           P SP Y+  SP   +    +   +V+SP   A +       PFSP
Sbjct: 178 PLSPAYILQSPVQVKQH--IQDVSVFSPIQQANAEGAQNDDPFSP 220

[201][TOP]
>UniRef100_B4L5V4 GI21801 n=1 Tax=Drosophila mojavensis RepID=B4L5V4_DROMO
          Length = 738

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 22/192 (11%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
           TA  +P  SSA A   + P   +     A  ++   +PA+P Y+A  +P +        A
Sbjct: 393 TAPAAPSYSSAKAPSYSAPATPSYSAPAAPSYS---APAAPSYSAPAAPSYS-------A 442

Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGP 346
             A +Y APA+P+Y A +     +P+ P+  A ++P YS    P YS P +PS  A   P
Sbjct: 443 PAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAP 502

Query: 347 A------AGYASPQSPGY------VPTSPAYARPGTVVAAANVYSPS-SPAYS-PFSPNY 484
           +        Y++P+ P Y       P +P Y+ P     AA  YS S SP+YS P +P Y
Sbjct: 503 SYSAPATQSYSAPKPPSYSAPSYSAPKAPVYSAPSYSAPAAQRYSASKSPSYSAPAAPTY 562

Query: 485 AAASSPAYQPPS 520
           +A  +PAY  PS
Sbjct: 563 SAPKAPAYSAPS 574

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
           TA  +P  S+A A   + P   +     A  ++   +PA+P Y+A            PA 
Sbjct: 209 TAPAAPSYSAAKAPNYSAPAAPSYSAPAAPSYS---APAAPSYSA------------PA- 252

Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGP-- 346
            AG  APA+ +Y A S     +P+ P+  A ++P YS    P YS P +PS  A   P  
Sbjct: 253 AAGNSAPAAQSYSAPSASSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSY 312

Query: 347 ----AAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAY 508
               AAG ++P +P Y  P +P+Y+ P    AA +  +P++P+YS P +P+Y+A  + +Y
Sbjct: 313 SAPAAAGNSAPAAPSYSAPAAPSYSAP----AAPSYSAPAAPSYSAPAAPSYSAPKASSY 368

Query: 509 QPPS 520
             P+
Sbjct: 369 SAPA 372

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 26/197 (13%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGG-GLGG 178
           A  S+S   +S+ +A  A         S +    P  S PA+P Y+A  +P +      G
Sbjct: 260 AAQSYSAPSASSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAAG 319

Query: 179 GPAGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS------------PGYS-P 313
             A  A +Y APA+P+Y A +     +P+ P+  A ++P YS            P YS P
Sbjct: 320 NSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPKASSYSAPAAPSYSAP 379

Query: 314 TSPSVGARG-----GPAA-GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-P 469
            +PS  A+G      PAA  Y+S ++P Y  P +P+Y+ P    AA +  +P++P+YS P
Sbjct: 380 KAPSYAAQGVSSYTAPAAPSYSSAKAPSYSAPATPSYSAP----AAPSYSAPAAPSYSAP 435

Query: 470 FSPNYAAASSPAYQPPS 520
            +P+Y+A ++P+Y  P+
Sbjct: 436 AAPSYSAPAAPSYSAPA 452

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 19/153 (12%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPA----GGAGAYAPASPAYMATSPGMGYSPSTPAL-AVS 283
           +PA+P Y+A +P+ G      P+      AG  APA+ +Y A S     +P+ P+  A +
Sbjct: 106 APAAPNYSAPAPQ-GYSAPAAPSYSAPAAAGNSAPAAQSYSAPSASSYSAPAAPSYSAPA 164

Query: 284 SPGYSPGYSPTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPG------------TVV 424
           +P YS   +P +PS  A    A+ Y++P +P Y  P +P+YA  G            +  
Sbjct: 165 APSYS---APAAPSYSA--PKASSYSAPAAPSYSAPKAPSYAAQGVSSYTAPAAPSYSAA 219

Query: 425 AAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
            A N  +P++P+YS P +P+Y+A ++P+Y  P+
Sbjct: 220 KAPNYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 252

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 18/188 (9%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
           +A  +P  S+  AAG + P   +     A  ++   +PA+P Y+A            PA 
Sbjct: 121 SAPAAPSYSAPAAAGNSAPAAQSYSAPSASSYS---APAAPSYSA------------PAA 165

Query: 191 GAGAYAPASPAYMATSPGMGYSPSTP------ALAVSSPGYSPGYSPTSPSVGARGGP-- 346
            + + APA+P+Y A       +P+ P      A + ++ G S   +P +PS  A   P  
Sbjct: 166 PSYS-APAAPSYSAPKASSYSAPAAPSYSAPKAPSYAAQGVSSYTAPAAPSYSAAKAPNY 224

Query: 347 ----AAGYASPQSPGY-VPTSPAYARP---GTVVAAANVYS-PSSPAYS-PFSPNYAAAS 496
               A  Y++P +P Y  P +P+Y+ P   G    AA  YS PS+ +YS P +P+Y+A +
Sbjct: 225 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAAGNSAPAAQSYSAPSASSYSAPAAPSYSAPA 284

Query: 497 SPAYQPPS 520
           +P+Y  P+
Sbjct: 285 APSYSAPA 292

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
 Frame = +2

Query: 122 PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP------STPALAVS 283
           PA+P YAA +          P G   + APA+P Y A +P  GYS       S PA A +
Sbjct: 83  PAAPTYAAPA----AASYSAPKGPVYS-APAAPNYSAPAP-QGYSAPAAPSYSAPAAAGN 136

Query: 284 SPGYSPGYSPTSPSVGARGGPAA-GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSP 457
           S   +  YS  +PS  +   PAA  Y++P +P Y  P +P+Y+ P     A++  +P++P
Sbjct: 137 SAPAAQSYS--APSASSYSAPAAPSYSAPAAPSYSAPAAPSYSAP----KASSYSAPAAP 190

Query: 458 AYS-PFSPNYAAASSPAYQPPS 520
           +YS P +P+YAA    +Y  P+
Sbjct: 191 SYSAPKAPSYAAQGVSSYTAPA 212

[202][TOP]
>UniRef100_UPI0001792AA2 PREDICTED: hypothetical protein n=1 Tax=Acyrthosiphon pisum
           RepID=UPI0001792AA2
          Length = 649

 Score = 74.3 bits (181), Expect = 5e-12
 Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
 Frame = +2

Query: 17  SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL----GGGP 184
           S SP      ++   +        S  G  +P    +SP Y   SP +GG      G  P
Sbjct: 357 SSSPSFGGGSSSYGGSSSSYGGSSSSYGSSSPSYGGSSPSYGGSSPSYGGSSPSYGGNSP 416

Query: 185 A--GGAGAYAPASPAYMATSPGMG------------YSPSTPALAVSSPGY---SPGYSP 313
           +  G + +Y  +SP+Y  +S   G            Y  S+P+   SSP Y   SP Y  
Sbjct: 417 SYGGSSHSYGGSSPSYGGSSHSYGGSSPSYGGSSHSYGGSSPSYGGSSPSYGGSSPSYGG 476

Query: 314 TSPSVG----ARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
           +SPS G    + GG ++ Y    SP Y  +SP+Y        ++++Y+ +SP+YS  S +
Sbjct: 477 SSPSYGGSSPSYGGSSSSYGG-SSPSYGGSSPSYGGSSPSYGSSSLYAGNSPSYSGSSSS 535

Query: 482 YAAAS--SPAYQPPS 520
           Y + S   P+Y  PS
Sbjct: 536 YGSPSPYKPSYGSPS 550

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
 Frame = +2

Query: 89  SPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTP 268
           S  G+ +   SP  P   + SP FGGG      G + +Y  +S +Y ++SP   Y  S+P
Sbjct: 341 SSYGQSSSYSSP--PQKYSSSPSFGGG-SSSYGGSSSSYGGSSSSYGSSSP--SYGGSSP 395

Query: 269 ALAVSSPGY---SPGYSPTSPSVG----ARGGPAAGYASPQSPGYVPTSPAYARPGTVVA 427
           +   SSP Y   SP Y   SPS G    + GG +  Y    S  Y  +SP+Y        
Sbjct: 396 SYGGSSPSYGGSSPSYGGNSPSYGGSSHSYGGSSPSYGG-SSHSYGGSSPSYG------G 448

Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAY 508
           +++ Y  SSP+Y   SP+Y   SSP+Y
Sbjct: 449 SSHSYGGSSPSYGGSSPSY-GGSSPSY 474

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
 Frame = +2

Query: 83  GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMG---- 250
           G+S +    P+   +SP +   S  +GG       G + +Y  +SP+Y  +SP  G    
Sbjct: 344 GQSSSYSSPPQKYSSSPSFGGGSSSYGGS-SSSYGGSSSSYGSSSPSYGGSSPSYGGSSP 402

Query: 251 -YSPSTPALAVSSPGY---SPGYSPTSPSVG----ARGGPAAGYASP------QSPGYVP 388
            Y  S+P+   +SP Y   S  Y  +SPS G    + GG +  Y          SP Y  
Sbjct: 403 SYGGSSPSYGGNSPSYGGSSHSYGGSSPSYGGSSHSYGGSSPSYGGSSHSYGGSSPSYGG 462

Query: 389 TSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
           +SP+Y        ++  Y  SSP+Y   SP+Y  +SS
Sbjct: 463 SSPSYG------GSSPSYGGSSPSYGGSSPSYGGSSS 493

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
 Frame = +2

Query: 83  GRSPA-GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 259
           G SP+ G  +P    +SP Y   SP +GG       G + +Y  +SP+Y  +SP   Y  
Sbjct: 455 GSSPSYGGSSPSYGGSSPSYGGSSPSYGGS-SPSYGGSSSSYGGSSPSYGGSSP--SYGG 511

Query: 260 STPALAVSS--PGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAA 433
           S+P+   SS   G SP YS +S S G+       Y SP SP    +S +Y  P +  +  
Sbjct: 512 SSPSYGSSSLYAGNSPSYSGSSSSYGSPSPYKPSYGSP-SP--YKSSSSYKAPYS-SSGP 567

Query: 434 NVYSPSSPAYSPFS--PNYAAASSP 502
           +  SPSS   SP+S   +Y  +SSP
Sbjct: 568 SFESPSSYKLSPYSGGSSYEGSSSP 592

[203][TOP]
>UniRef100_C6F0A4 RNA polymerase II (Fragment) n=2 Tax=Plasmodium (Laverania)
           RepID=C6F0A4_PLAFA
          Length = 202

 Score = 73.9 bits (180), Expect = 6e-12
 Identities = 50/130 (38%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
           +P+ SP SP Y+  SP+               Y+P SP Y  TSP   YSP++P  + +S
Sbjct: 44  SPKYSPTSPKYSPTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTS 86

Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVYSP 448
           P YSP    YSPTSP       P     S  SP + PTSPAY+    V       N + P
Sbjct: 87  PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQP 146

Query: 449 SSPAYSPFSP 478
            SPAY   SP
Sbjct: 147 MSPAYILQSP 156

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 49/110 (44%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
 Frame = +2

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
           Y   SP Y  TSP   YSP++P  + +SP YSP    YSPTSP       P +   SP S
Sbjct: 33  YNVMSPVYSVTSPK--YSPTSPKYSPTSPKYSPTSPKYSPTSPKYS----PTSPKYSPTS 86

Query: 374 PGYVPTSPAYARPGTV---VAAANV--YSPSSPAYSPFSPNYAAASSPAY 508
           P Y PTSP Y+    V   +A+ N   YS +SP +SP SP Y + SSP Y
Sbjct: 87  PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAY-SISSPVY 135

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 49/125 (39%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
 Frame = +2

Query: 203 YAPASPAYMA-------TSP---------GMGYSPSTPALAVSSPGYSPG---YSPTSPS 325
           Y+P SP Y A       TSP            Y+  +P  +V+SP YSP    YSPTSP 
Sbjct: 1   YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60

Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
                 P +   SP SP Y PTSP Y+        +  YSP+SP YSP SP     +SP 
Sbjct: 61  YS----PTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSPKYSPTSPVAQNIASPN 110

Query: 506 YQPPS 520
           Y P S
Sbjct: 111 YSPYS 115

[204][TOP]
>UniRef100_P14248 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Plasmodium
            falciparum CDC/Honduras RepID=RPB1_PLAFD
          Length = 2452

 Score = 73.9 bits (180), Expect = 6e-12
 Identities = 50/130 (38%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
 Frame = +2

Query: 107  TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
            +P+ SP SP Y+  SP+               Y+P SP Y  TSP   YSP++P  + +S
Sbjct: 2294 SPKYSPTSPKYSPTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTS 2336

Query: 287  PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVYSP 448
            P YSP    YSPTSP       P     S  SP + PTSPAY+    V       N + P
Sbjct: 2337 PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQP 2396

Query: 449  SSPAYSPFSP 478
             SPAY   SP
Sbjct: 2397 MSPAYILQSP 2406

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 56/146 (38%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
 Frame = +2

Query: 104  FTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA---YAPASPAYMATSPGMGYSPSTPAL 274
            ++P  SP SP Y A +  +                 Y   SP Y  TSP   YSP++P  
Sbjct: 2247 YSPSYSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPK--YSPTSPKY 2304

Query: 275  AVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTV---VAAAN 436
            + +SP YSP    YSPTSP       P +   SP SP Y PTSP Y+    V   +A+ N
Sbjct: 2305 SPTSPKYSPTSPKYSPTSPKYS----PTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPN 2360

Query: 437  V--YSPSSPAYSPFSPNYAAASSPAY 508
               YS +SP +SP SP Y + SSP Y
Sbjct: 2361 YSPYSITSPKFSPTSPAY-SISSPVY 2385

[205][TOP]
>UniRef100_B3MYU2 GF22208 n=1 Tax=Drosophila ananassae RepID=B3MYU2_DROAN
          Length = 563

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 9/178 (5%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A  +P +       PA
Sbjct: 118 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYSA-----PA 169

Query: 188 GGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGPA 349
                 APA+P+Y A +     +P+ P+  A ++P YS    P YS P +PS  A    A
Sbjct: 170 AAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAAA 229

Query: 350 AGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPP 517
             Y++P S GY  P + +Y+ P    AA +  +P++P+YS P +P+Y+A ++P+Y  P
Sbjct: 230 PSYSAPASSGYSAPKASSYSAP----AAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAP 283

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
 Frame = +2

Query: 5   NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
           N+ AS+S   +    A    P       +PA       +PA+P Y+A +        G  
Sbjct: 57  NSQASYSAPKAQGGYAAPVAPAPAPSYSAPAAPAPSYSAPAAPSYSAPAS------SGYS 110

Query: 185 AGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYSPGYSPTSPSVGARGGPAAGY 358
           A  A +Y APA+P+Y A +     +P+ P+  A ++P YS   +P +PS  A   P+  Y
Sbjct: 111 APKASSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPS--Y 165

Query: 359 ASPQS-PGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
           ++P + P Y  P +P+Y+ P    AA +  +P++P+YS P +P+Y+A ++P+Y  P+
Sbjct: 166 SAPAAAPSYSAPAAPSYSAP----AAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 218

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 20/190 (10%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP-- 184
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A +          P  
Sbjct: 257 SAPAAPSYSAPAAPSYSAPAAPSYSAPKAPSYS---APAAPSYSAPAAPSYSAPAASPSY 313

Query: 185 -AGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARG 340
            A  A AY APA+P+Y A +     +P+ P+  A ++P YS    P YS P +PS  A  
Sbjct: 314 SASAAPAYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 373

Query: 341 GP------AAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS---PFSPNYAA 490
            P      A  Y++P +P Y  P +PAY+ P    AA +  +P++P+YS   P S +Y+A
Sbjct: 374 APSYSAPAAPAYSAPAAPSYSAPAAPAYSAP-KAAAAPSYSAPAAPSYSAPAPSSSSYSA 432

Query: 491 ASSPAYQPPS 520
            ++P+Y  P+
Sbjct: 433 PAAPSYSAPA 442

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG-PA 187
           +A  +P  S+  A   + P   +     A  ++   +P+    AA +P +      G  A
Sbjct: 183 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAAAPSYSAPASSGYSA 242

Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
             A +Y APA+P+Y A +     +P+ P+  A ++P YS   +P +PS  A   P+  Y+
Sbjct: 243 PKASSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APKAPSYSAPAAPS--YS 297

Query: 362 SPQSPGYVPTSPAYARPGTVVAAANVYS-PSSPAYS-PFSPNYAAASSPAYQPPS 520
           +P +P Y  ++PA A P    +AA  YS P++P+YS P +P+Y+A ++P+Y  P+
Sbjct: 298 APAAPSY--SAPA-ASPSYSASAAPAYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 349

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 15/185 (8%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGG-P 184
           +AS +P  S+  A   + P   +     A  ++   +PA+P Y+A  +P +         
Sbjct: 314 SASAAPAYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYSAPAAPSYS 370

Query: 185 AGGAGAY-APASPAYMATSPGMGYSPSTPAL----AVSSPGYS----PGYSPTSPSVGAR 337
           A  A +Y APA+PAY A +     +P+ PA     A ++P YS    P YS  +PS  + 
Sbjct: 371 APAAPSYSAPAAPAYSAPAAPSYSAPAAPAYSAPKAAAAPSYSAPAAPSYSAPAPSSSSY 430

Query: 338 GGPAA-GYASPQSPGYVPTSPAYARPGTVVAAANVYS-PSSPAYS-PFSPNYAA-ASSPA 505
             PAA  Y++P +P Y  ++PA +       A++ YS P+S +YS P + +Y+A +SSP+
Sbjct: 431 SAPAAPSYSAPAAPPY--SAPASSSSSYSAPASSSYSAPASSSYSAPKASSYSAPSSSPS 488

Query: 506 YQPPS 520
           Y  P+
Sbjct: 489 YSAPA 493

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP---------GMGYSP 259
           +P +  +   Y+A   + G      PA      APA+PA   ++P           GYS 
Sbjct: 52  SPVVYNSQASYSAPKAQGGYAAPVAPAPAPSYSAPAAPAPSYSAPAAPSYSAPASSGYSA 111

Query: 260 ------STPALAVSSPGYSPGYS-PTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPG 415
                 S PA    S   +P YS P +PS  A   P+  Y++P +P Y  P +P+Y+ P 
Sbjct: 112 PKASSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPS--YSAPAAPSYSAPAAPSYSAP- 168

Query: 416 TVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
              AA +  +P++P+YS P +P+Y+A ++P+Y  P+
Sbjct: 169 --AAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 202

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAY----APASPAYMATSPGMGYSPSTPAL-AVS 283
           +PA+P Y+A +          PA  A A     APA+P+Y A +     +P+ P+  A +
Sbjct: 298 APAAPSYSAPAASPSYSASAAPAYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 357

Query: 284 SPGYS----PGYSP------TSPSVGARGGPAA-GYASPQSPGYVPTSPAYARPGTVVAA 430
           +P YS    P YS       ++P+  A   PAA  Y++P +P Y     A A P     A
Sbjct: 358 APSYSAPAAPSYSAPAAPSYSAPAAPAYSAPAAPSYSAPAAPAY-SAPKAAAAPSYSAPA 416

Query: 431 ANVYS---PSSPAYS-PFSPNYAAASSPAYQPPS 520
           A  YS   PSS +YS P +P+Y+A ++P Y  P+
Sbjct: 417 APSYSAPAPSSSSYSAPAAPSYSAPAAPPYSAPA 450

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 3/174 (1%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A +           A 
Sbjct: 354 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPAYS---APAAPSYSAPA---APAYSAPKAA 407

Query: 191 GAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASP 367
            A +Y APA+P+Y A +P    S S PA    +P YS   +P +P   A    ++ Y++P
Sbjct: 408 AAPSYSAPAAPSYSAPAPSSS-SYSAPA----APSYS---APAAPPYSAPASSSSSYSAP 459

Query: 368 QSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAA-ASSPAYQPPSR 523
            S  Y  P S +Y+ P     A++  +PSS      SP+Y+A ASS  Y  PS+
Sbjct: 460 ASSSYSAPASSSYSAP----KASSYSAPSS------SPSYSAPASSSGYSAPSK 503

[206][TOP]
>UniRef100_B9PZ84 Putative uncharacterized protein n=1 Tax=Toxoplasma gondii GT1
           RepID=B9PZ84_TOXGO
          Length = 487

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 51/177 (28%), Positives = 67/177 (37%), Gaps = 14/177 (7%)
 Frame = +2

Query: 26  PIMSSADAAGRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
           P  + +DA   ATP +   TP +       P  +PA PG     P       G       
Sbjct: 253 PPAAKSDAKPGATPAKPGATPAKPGVTPAKPDATPAKPGATPAKPGATPAKPGATPAKPA 312

Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYS----PGYSPTSPSVGARGGPA-----A 352
             AP  P      PG+G +P+ P L    PG S    PG +P  P  GA   P       
Sbjct: 313 LSAPVKPGSTPVKPGVG-APAKPGLTPVKPGLSTPAKPGLTPVKPGAGAPAKPGLTPVKP 371

Query: 353 GYASPQSPGYVPTSP---AYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           G  +P  PG  P  P   A A+PG       + +P+ P  +P  P   A + P   P
Sbjct: 372 GVGAPAKPGLTPVKPGAGAPAKPGLTPVKPGLSTPAKPGLTPVKPGAGAPAKPGLTP 428

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 9/169 (5%)
 Frame = +2

Query: 35  SSADAAGRATPG-----RMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
           S  D A +  PG        PG +PAG       P  PG A ++    G   G PA  + 
Sbjct: 202 SGPDLAAKKPPGGGDSASGKPGGAPAGLVKKPDLP-KPG-AVVAKTDTGAKPGPPAAKSD 259

Query: 200 AYAPASPAYMATSPGM-GYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
           A   A+PA    +P   G +P+ P    + PG +P     +P+           ++P  P
Sbjct: 260 AKPGATPAKPGATPAKPGVTPAKPDATPAKPGATPAKPGATPAKPGATPAKPALSAPVKP 319

Query: 377 GYVPTSP---AYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           G  P  P   A A+PG       + +P+ P  +P  P   A + P   P
Sbjct: 320 GSTPVKPGVGAPAKPGLTPVKPGLSTPAKPGLTPVKPGAGAPAKPGLTP 368

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 48/151 (31%), Positives = 60/151 (39%), Gaps = 12/151 (7%)
 Frame = +2

Query: 53  GRATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPA 223
           G +TP +  +TP +  AG      +PA PG   + P  G     G      GA APA P 
Sbjct: 342 GLSTPAKPGLTPVKPGAG------APAKPGLTPVKPGVGAPAKPGLTPVKPGAGAPAKPG 395

Query: 224 YMATSPGMGYSPSTPALAVSSPG----YSPGYSPTSPSVGARGGPA-----AGYASPQSP 376
                PG+  +P+ P L    PG      PG +P  P  GA   P       G  +P  P
Sbjct: 396 LTPVKPGLS-TPAKPGLTPVKPGAGAPAKPGLTPVKPGAGAPAKPGLTPVKPGAGAPAKP 454

Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
              P  P   +PG   AAA V     PA  P
Sbjct: 455 --TPVKPPGPKPG-APAAAKVDLKGKPAIKP 482

[207][TOP]
>UniRef100_B4JMW7 GH24704 n=1 Tax=Drosophila grimshawi RepID=B4JMW7_DROGR
          Length = 692

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A  +P +        A
Sbjct: 166 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYS-------A 215

Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYS-PGYSPTSPSVGARGGPAAGYA 361
             A +Y APA+P+Y A       +P+    A ++P YS P  S ++P+  +   PA  Y+
Sbjct: 216 PAAPSYSAPAAPSYSAPKGPSYSAPAQSYSAPAAPSYSEPAQSYSAPASPSYSAPAQSYS 275

Query: 362 SPQSPGY-VPTSPAYARPG----TVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPSR 523
           SP SP Y  P +P+Y+ P     +  AA +  +P++P+YS P  P+Y+A ++P+Y  P++
Sbjct: 276 SPASPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPKGPSYSAPAAPSYSAPAQ 335

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 19/190 (10%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGG 181
           A  S+S    S  A   A+P    P +S +   +P  S PA+P Y+A  +P +       
Sbjct: 248 AAPSYSEPAQSYSAP--ASPSYSAPAQSYSSPASPSYSAPAAPSYSAPAAPSYS------ 299

Query: 182 PAGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYS----PGYS-PTSPSVGARGG 343
            A  A +Y APA+P+Y A       +P+ P+ +  +  YS    P YS P +PS  A   
Sbjct: 300 -APAAPSYSAPAAPSYSAPKGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSYSAPAA 358

Query: 344 P------AAGYASPQSPGY-VPTSPAYARPG--TVVAAANVYS-PSSPAYS-PFSPNYAA 490
           P      A  Y++P +P Y  P  P+Y+ P   +  A A  YS P++P+YS P +P+Y+A
Sbjct: 359 PSYSAPAAPSYSAPAAPSYSAPKGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSYSA 418

Query: 491 ASSPAYQPPS 520
            ++P+Y  P+
Sbjct: 419 PAAPSYSAPA 428

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 14/184 (7%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A  +P +    G   +
Sbjct: 182 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYSAPKGPSYS 238

Query: 188 GGAGAY-APASPAYMATSPGMGYSP------STPALAVSSPGYSPGYS-PTSPSVGARGG 343
             A +Y APA+P+Y  + P   YS       S PA + SSP  SP YS P +PS  A   
Sbjct: 239 APAQSYSAPAAPSY--SEPAQSYSAPASPSYSAPAQSYSSPA-SPSYSAPAAPSYSAPAA 295

Query: 344 PAAGYASPQSPGY-VPTSPAYARP-GTVVAAANVYSPSSPAYS---PFSPNYAAASSPAY 508
           P+  Y++P +P Y  P +P+Y+ P G   +A    S S+PA S   P +P+Y+A ++P+Y
Sbjct: 296 PS--YSAPAAPSYSAPAAPSYSAPKGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSY 353

Query: 509 QPPS 520
             P+
Sbjct: 354 SAPA 357

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 12/147 (8%)
 Frame = +2

Query: 119 SPASPGYAA-MSPRFGGGLGGGPAGGAGAY-APASPAYMATSPGMGYS-PSTPALAVSSP 289
           +PA+P Y+A   P +        +  A +Y APA+P+Y A S G  YS P+ P+ +  + 
Sbjct: 465 APAAPSYSAPKGPSYSAPAAPSYSAPAQSYSAPAAPSYSA-SKGPSYSAPAAPSYSAPAQ 523

Query: 290 GYS----PGYSPTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPG---TVVAAANVYS 445
            YS    P YS  + S  A   P+  Y++P +P Y  P  P+Y+ P    +  AA +  +
Sbjct: 524 SYSAPAAPSYSAPAQSYSAPAAPS--YSAPAAPSYSAPKGPSYSAPAQSYSAPAAPSYSA 581

Query: 446 PSSPAYS-PFSPNYAAASSPAYQPPSR 523
           P +P YS P +P+Y+A ++P+Y  P R
Sbjct: 582 PKAPVYSVPVAPSYSAPAAPSYAAPKR 608

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
 Frame = +2

Query: 59  ATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGGPAGGAGAY-APASPAYM 229
           A P    P +S +    P  S PA+P Y+A  +P +        A  A +Y APA+P+Y 
Sbjct: 326 AAPSYSAPAQSYSAPAAPSYSAPAAPSYSAPAAPSYS-------APAAPSYSAPAAPSYS 378

Query: 230 ATSPGMGYSPSTPALAVSSPGYS----PGYS-PTSPSVGARGGP------AAGYASPQSP 376
           A       +P+ P+ +  +  YS    P YS P +PS  A   P      A  Y++P +P
Sbjct: 379 APKGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAP 438

Query: 377 GY-VPTSPAYARPG--TVVAAANVYS-PSSPAYS-PFSPNYAAASSPAYQPPSR 523
            Y  P  P+Y+ P   +  A A  YS P++P+YS P  P+Y+A ++P+Y  P++
Sbjct: 439 SYSAPKGPSYSAPADPSYSAPAQSYSAPAAPSYSAPKGPSYSAPAAPSYSAPAQ 492

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 22/192 (11%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A  +P +        A
Sbjct: 126 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYS-------A 175

Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGP 346
             A +Y APA+P+Y A +     +P+ P+  A ++P YS    P YS P +PS  A  GP
Sbjct: 176 PAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPKGP 235

Query: 347 -----AAGYASPQSPGY--------VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNY 484
                A  Y++P +P Y         P SP+Y+ P     A +  SP+SP+YS P +P+Y
Sbjct: 236 SYSAPAQSYSAPAAPSYSEPAQSYSAPASPSYSAP-----AQSYSSPASPSYSAPAAPSY 290

Query: 485 AAASSPAYQPPS 520
           +A ++P+Y  P+
Sbjct: 291 SAPAAPSYSAPA 302

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 10/180 (5%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
           +A  +P  S+  A   + P   +     A  ++   +P  P Y+A  +P +        A
Sbjct: 346 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APKGPSYSAPAAPSYSAPAQSYSA 402

Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGP 346
             A +Y APA+P+Y A +     +P+ P+  A ++P YS    P YS P  PS  A   P
Sbjct: 403 PAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPKGPSYSAPADPSYSA---P 459

Query: 347 AAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
           A  Y++P +P Y  P  P+Y+ P     AA  YS  + +YS P +P+Y+A+  P+Y  P+
Sbjct: 460 AQSYSAPAAPSYSAPKGPSYSAP-----AAPSYSAPAQSYSAPAAPSYSASKGPSYSAPA 514

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 9/143 (6%)
 Frame = +2

Query: 119 SPASPGYAA-MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPG 292
           +PA+P Y+A  +P +               APA+P+Y A +     +P+ P+  A ++P 
Sbjct: 71  APAAPSYSAPKAPTYS--------------APAAPSYSAPAAPSYSAPAAPSYSAPAAPS 116

Query: 293 YS----PGYS-PTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSS 454
           YS    P YS P +PS  A   P+  Y++P +P Y  P +P+Y+ P    AA +  +P++
Sbjct: 117 YSAPAAPSYSAPAAPSYSAPAAPS--YSAPAAPSYSAPAAPSYSAP----AAPSYSAPAA 170

Query: 455 PAYS-PFSPNYAAASSPAYQPPS 520
           P+YS P +P+Y+A ++P+Y  P+
Sbjct: 171 PSYSAPAAPSYSAPAAPSYSAPA 193

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 9/180 (5%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A  +P +        A
Sbjct: 110 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS---APAAPSYSAPAAPSYS-------A 159

Query: 188 GGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGGP 346
             A +Y APA+P+Y A +     +P+ P+  A ++P YS    P YS P +PS  A   P
Sbjct: 160 PAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAP 219

Query: 347 AAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
           +  Y++P +P Y  P  P+Y+ P     A +  +P++P+YS  + +Y+A +SP+Y  P++
Sbjct: 220 S--YSAPAAPSYSAPKGPSYSAP-----AQSYSAPAAPSYSEPAQSYSAPASPSYSAPAQ 272

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
 Frame = +2

Query: 59  ATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGG-PAGGAGAY-APASPAY 226
           A P    P +S +    P  S PA+P Y+A  +P +         A  A +Y AP  P+Y
Sbjct: 389 AAPSYSAPAQSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPKGPSY 448

Query: 227 MATSPGMGYSPSTPALAVSSPGYS----PGYS-PTSPSVGARGGPAAGYASPQSPGY--- 382
            A +     +P+    A ++P YS    P YS P +PS  A   PA  Y++P +P Y   
Sbjct: 449 SAPADPSYSAPAQSYSAPAAPSYSAPKGPSYSAPAAPSYSA---PAQSYSAPAAPSYSAS 505

Query: 383 ------VPTSPAYARPGTVVAAANVYSPSSPAYS---PFSPNYAAASSPAYQPP 517
                  P +P+Y+ P    +A    S S+PA S   P +P+Y+A ++P+Y  P
Sbjct: 506 KGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSYSAP 559

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAG--GAGAYAPASPAYMATSPGMGYS-PSTPALAVSS- 286
           +PA P Y+A +  +        +   G    APA+P+Y A  P   YS P+ P+ + S  
Sbjct: 450 APADPSYSAPAQSYSAPAAPSYSAPKGPSYSAPAAPSYSA--PAQSYSAPAAPSYSASKG 507

Query: 287 PGYSPGYSPTSPSVGARGGPAAGYASPQSPGY--------VPTSPAYARPGTVVAAANVY 442
           P YS   +P +PS  A   PA  Y++P +P Y         P +P+Y+ P    AA +  
Sbjct: 508 PSYS---APAAPSYSA---PAQSYSAPAAPSYSAPAQSYSAPAAPSYSAP----AAPSYS 557

Query: 443 SPSSPAYSPFSPNYAAASSPAYQPP 517
           +P  P+YS  + +Y+A ++P+Y  P
Sbjct: 558 APKGPSYSAPAQSYSAPAAPSYSAP 582

 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
 Frame = +2

Query: 230 ATSPGMGYSPSTPALAVSSPGYSPGYSPT--SPSVGARGGPAA-GYASPQSPGY-VPTSP 397
           A  P + Y+  +   A ++P YS   +PT  +P+  +   PAA  Y++P +P Y  P +P
Sbjct: 56  AYGPPIIYNSKSSYSAPAAPSYSAPKAPTYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAP 115

Query: 398 AYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
           +Y+ P    AA +  +P++P+YS P +P+Y+A ++P+Y  P+
Sbjct: 116 SYSAP----AAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 153

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 16/185 (8%)
 Frame = +2

Query: 11   TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS---PASPGYAA-MSPRFGGGLGG 178
            +AS  P  S+  A   + P +     +      P  S   PA+P Y+A  +P +    G 
Sbjct: 503  SASKGPSYSAPAAPSYSAPAQSYSAPAAPSYSAPAQSYSAPAAPSYSAPAAPSYSAPKGP 562

Query: 179  GPAGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGAR 337
              +  A +Y APA+P+Y A    +   P  P+  A ++P Y+    P YS P +PS  A 
Sbjct: 563  SYSAPAQSYSAPAAPSYSAPKAPVYSVPVAPSYSAPAAPSYAAPKRPTYSAPVAPSYAAP 622

Query: 338  GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSP-----SSPAYSPFSPNYAAASSP 502
              PAA YA+P+S GY               +A ++SP      + +Y P S  Y  +S P
Sbjct: 623  --PAAAYAAPKSAGY---------------SARMFSPMLMSARTSSYGPASAGYGGSSIP 665

Query: 503  AYQPP 517
            A  PP
Sbjct: 666  A--PP 668

[208][TOP]
>UniRef100_B3P904 GG12928 n=1 Tax=Drosophila erecta RepID=B3P904_DROER
          Length = 558

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 20/150 (13%)
 Frame = +2

Query: 119 SPASPGYAA-MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPG 292
           +PA+P Y+A  +P +       PA  + + APA+P+Y A +     +P+ P+  A ++P 
Sbjct: 235 APAAPSYSAPAAPSYSA-----PASSSYS-APAAPSYSAPASSSYSAPAAPSYSAPAAPS 288

Query: 293 YS----PGYS---------PTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPGTVVAA 430
           YS    P YS         P +PS  A   PA+ Y++P  P Y  P +P+Y+ P +  +A
Sbjct: 289 YSAPAAPSYSAQKASSYSAPVAPSYSAPAAPASSYSAPAGPSYSAPAAPSYSAPASSYSA 348

Query: 431 ANVYS---PSSPAYS-PFSPNYAAASSPAY 508
               S   P++P+YS P +P+Y+A++SP+Y
Sbjct: 349 PKAPSYSAPAAPSYSAPAAPSYSASASPSY 378

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 22/156 (14%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLG---GGPAG------GAGAY-APASPAYMATSPGMGYSPSTP 268
           +PA+P Y+  +P +          PA        A +Y APA+P+Y A +     +P+ P
Sbjct: 76  APAAPAYSPAAPSYSAPASPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSKYSAPAAP 135

Query: 269 ALAVSSPGYSPGYSPTSPSVGARGGP------AAGYASPQSPGY-VPTSPAYARPG---- 415
             + S+P  S   +P +PS  A   P      ++ Y++P +P Y  P +P+Y+ P     
Sbjct: 136 --SYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSY 193

Query: 416 TVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
           +  A+++  +P++P+YS P +P+Y+A ++P+Y  P+
Sbjct: 194 SAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 229

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPGRSP--AGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
           A+ S+S   SS+ +A  A P    P      A   +   +PA+P Y+A +          
Sbjct: 93  ASPSYSAPASSSYSAP-AAPSYSAPAAPSYSAPASSKYSAPAAPSYSAPAS------SSY 145

Query: 182 PAGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARG 340
            A  A +Y APA+P+Y A +     +P+ P+  A ++P YS    P YS P S S  A  
Sbjct: 146 SAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPA 205

Query: 341 GPAAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQP 514
            P+  Y++P +P Y  P +P+Y+ P    A+++  +P++P+YS P +P+Y+A +S +Y  
Sbjct: 206 APS--YSAPAAPSYSAPAAPSYSAP----ASSSYSAPAAPSYSAPAAPSYSAPASSSYSA 259

Query: 515 PS 520
           P+
Sbjct: 260 PA 261

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGG 181
           A  S+S   SS+ +A  A         S +    P  S PA+P Y+A  +P +       
Sbjct: 245 AAPSYSAPASSSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYS------ 298

Query: 182 PAGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYS-PTSPSVGARGGPAAG 355
            A  A +Y AP +P+Y A        P+ PA + S+P   P YS P +PS  A   PA+ 
Sbjct: 299 -AQKASSYSAPVAPSYSA--------PAAPASSYSAPA-GPSYSAPAAPSYSA---PASS 345

Query: 356 YASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS---------PFSPNYAAASSPA 505
           Y++P++P Y  P +P+Y+ P    AA +  + +SP+YS         P +P+Y+A ++P+
Sbjct: 346 YSAPKAPSYSAPAAPSYSAP----AAPSYSASASPSYSSSASSSYSAPAAPSYSAPAAPS 401

Query: 506 YQPPS 520
           Y  P+
Sbjct: 402 YSAPA 406

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 10/125 (8%)
 Frame = +2

Query: 176 GGPAGGAGAYAPASPAYMA-TSPGMGYSPSTPALAVSSPGYSPGYSPT--SPSVGARGGP 346
           G  A  A AY+PA+P+Y A  SP      S+   A ++P YS   +P+  +P+      P
Sbjct: 73  GYSAPAAPAYSPAAPSYSAPASPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSKYSAP 132

Query: 347 AA-GYASPQSPGY-VPTSPAYARPG----TVVAAANVYSPSSPAYS-PFSPNYAAASSPA 505
           AA  Y++P S  Y  P +P+Y+ P     +  A+++  +P++P+YS P +P+Y+A ++P+
Sbjct: 133 AAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPS 192

Query: 506 YQPPS 520
           Y  P+
Sbjct: 193 YSAPA 197

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 40/115 (34%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
 Frame = +2

Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
           PA   G  APA+PAY   +P    +P++P  + S+P  S   +P +PS  A   P+  Y+
Sbjct: 68  PAKDQGYSAPAAPAYSPAAPSYS-APASP--SYSAPASSSYSAPAAPSYSAPAAPS--YS 122

Query: 362 SPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
           +P S  Y  P +P+Y+ P    A+++  +P++P+YS P +P+Y+A +S +Y  P+
Sbjct: 123 APASSKYSAPAAPSYSAP----ASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPA 173

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGG-P 184
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A  +P +         
Sbjct: 178 SAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYS---APAAPSYSAPAAPSYSAPASSSYS 234

Query: 185 AGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
           A  A +Y APA+P+Y A +     +P+ P+   S+P  S   +P +PS  A   P+  Y+
Sbjct: 235 APAAPSYSAPAAPSYSAPASSSYSAPAAPSY--SAPASSSYSAPAAPSYSAPAAPS--YS 290

Query: 362 SPQSPGY---------VPTSPAYARPGTVVAAANVYS-PSSPAYS-PFSPNYAAASS--- 499
           +P +P Y          P +P+Y+ P    A A+ YS P+ P+YS P +P+Y+A +S   
Sbjct: 291 APAAPSYSAQKASSYSAPVAPSYSAPA---APASSYSAPAGPSYSAPAAPSYSAPASSYS 347

Query: 500 ----PAYQPPS 520
               P+Y  P+
Sbjct: 348 APKAPSYSAPA 358

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 4/170 (2%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
           +A  +P  S+  A   + P   +     A  ++   +P +P Y+A  P         PAG
Sbjct: 274 SAPAAPSYSAPAAPSYSAPAAPSYSAQKASSYS---APVAPSYSA--PAAPASSYSAPAG 328

Query: 191 GAGAYAPASPAYMATSPGMGYS-PSTPAL-AVSSPGYSPGYSPTSPSVGARGGPAAGYAS 364
            + + APA+P+Y A  P   YS P  P+  A ++P YS   +P +PS  A   P+  Y+S
Sbjct: 329 PSYS-APAAPSYSA--PASSYSAPKAPSYSAPAAPSYS---APAAPSYSASASPS--YSS 380

Query: 365 PQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAY 508
             S  Y  P +P+Y+ P    AA +  +P+S +YS P +P+Y+A +S  Y
Sbjct: 381 SASSSYSAPAAPSYSAP----AAPSYSAPASSSYSAPAAPSYSAPASSGY 426

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
 Frame = +2

Query: 59  ATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGGPAGGAGAY--APASPAY 226
           A P    P  S +    P  S PA+P Y+A  +P +        +  A +   APA+P+Y
Sbjct: 335 AAPSYSAPASSYSAPKAPSYSAPAAPSYSAPAAPSYSASASPSYSSSASSSYSAPAAPSY 394

Query: 227 MA-TSPGMGYSPSTPALAVSSPGYSP----GYSPTSPSVGARGGPAAGYASPQ-SPGY-- 382
            A  +P      S+   A ++P YS     GYS           PA+GY++P+ S GY  
Sbjct: 395 SAPAAPSYSAPASSSYSAPAAPSYSAPASSGYSAARAYSAGSAAPASGYSAPKASSGYSA 454

Query: 383 VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
              S  Y+ P +  AAA   S S+PA S  S  Y+A +S
Sbjct: 455 PKASSGYSAPASSGAAA-APSYSAPASSSASSGYSAPAS 492

[209][TOP]
>UniRef100_C6F1F1 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
           RepID=C6F1F1_PLAVI
          Length = 211

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 57/145 (39%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPGMG--YSPSTPALAVSS 286
           SP SP Y   +P  GGG   G  G    Y+P SP       +P M   +S  +P  +V+S
Sbjct: 2   SPTSPTYHLTNPASGGG-SSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60

Query: 287 PGYSPG---YSPTSPS---VGARGGPAAGYASPQSPGYVPTSPAYARPGTVV--AAANVY 442
           P YSP    YSPTSP       +  P +   SP SP Y PTSP Y+    V    ++  Y
Sbjct: 61  PKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPSSPVPNNPSSPHY 120

Query: 443 SP---SSPAYSPFSPNYAAASSPAY 508
           SP   +SP +SP SP Y + SSP Y
Sbjct: 121 SPYAIASPKFSPTSPAY-SISSPVY 144

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 50/132 (37%), Positives = 60/132 (45%), Gaps = 28/132 (21%)
 Frame = +2

Query: 203 YAPASPAYMATSPGMG------------YSPSTPA-------------LAVSSPGY---S 298
           Y+P SP Y  T+P  G            YSP++P               +V SP Y   S
Sbjct: 1   YSPTSPTYHLTNPASGGGSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60

Query: 299 PGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
           P YSPTSP    +  P +   SP SP Y PTSP Y+        +  YSP+SP YSP SP
Sbjct: 61  PKYSPTSP----KYSPTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSPQYSPSSP 110

Query: 479 NYAAASSPAYQP 514
                SSP Y P
Sbjct: 111 VPNNPSSPHYSP 122

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
           S  SP Y+  SP++        +  +  Y+P SP Y  TSP   YSP++P  + +SP YS
Sbjct: 50  SVVSPVYSVTSPKY--------SPTSPKYSPTSPKYSPTSPK--YSPTSPKYSPTSPKYS 99

Query: 299 PGYSPTSPSVGARGGPAAGYASP---QSPGYVPTSPAYARPGTVV-----AAANVYSPSS 454
           P     SPS      P++ + SP    SP + PTSPAY+    V      A +    P S
Sbjct: 100 PTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQHPLS 159

Query: 455 PAYSPFSP 478
           PAY   SP
Sbjct: 160 PAYILQSP 167

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP+ S        T  + +P        +P+ SP SP Y+  SP+               
Sbjct: 53  SPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK--------------- 97

Query: 203 YAPASPAYMATSPGMGYSPSTP---ALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
           Y+P SP Y  +SP +  +PS+P     A++SP +   SP YS +SP     G   +    
Sbjct: 98  YSPTSPQYSPSSP-VPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQH 156

Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS-------PFSP 478
           P SP Y+  SP   +    +   +V+SP   A +       PFSP
Sbjct: 157 PLSPAYILQSPVQVKQH--IQDVSVFSPIQQANAEEVQNDDPFSP 199

[210][TOP]
>UniRef100_C6F1F3 RNA polymerase II (Fragment) n=1 Tax=Plasmodium cynomolgi
           RepID=C6F1F3_9APIC
          Length = 225

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 51/133 (38%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
           S  SP Y+  SP++        +  +  Y+P SP Y+ TSP   YSP++P  + +SP YS
Sbjct: 50  SVVSPVYSVTSPKY--------SPTSPKYSPTSPKYLPTSPK--YSPTSPKYSPTSPKYS 99

Query: 299 PG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP 469
           P    YSPTSP             SP SP Y PTSP    P +     + Y+ +SP +SP
Sbjct: 100 PTSPKYSPTSPKY-----------SPTSPQYSPTSPVPNNPSS--PHYSPYAIASPKFSP 146

Query: 470 FSPNYAAASSPAY 508
            SP Y + SSP Y
Sbjct: 147 TSPAY-SISSPVY 158

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 46/107 (42%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
 Frame = +2

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQS 373
           ++  SP Y  TSP   YSP++P  + +SP Y   SP YSPTSP             SP S
Sbjct: 49  HSVVSPVYSVTSPK--YSPTSPKYSPTSPKYLPTSPKYSPTSPKY-----------SPTS 95

Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           P Y PTSP Y+        +  YSP+SP YSP SP     SSP Y P
Sbjct: 96  PKYSPTSPKYS------PTSPKYSPTSPQYSPTSPVPNNPSSPHYSP 136

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 51/132 (38%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
           +P+ SP SP Y+  SP++   L   P      Y+P SP Y  TSP   YSP++P  + +S
Sbjct: 60  SPKYSPTSPKYSPTSPKY---LPTSPK-----YSPTSPKYSPTSPK--YSPTSPKYSPTS 109

Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV-----AAANVY 442
           P YSP    YSPTSP       P     +  SP + PTSPAY+    V      A     
Sbjct: 110 PKYSPTSPQYSPTSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARNKSQ 169

Query: 443 SPSSPAYSPFSP 478
            P SPAY   SP
Sbjct: 170 HPLSPAYILQSP 181

[211][TOP]
>UniRef100_C4XYJ5 Predicted protein n=1 Tax=Clavispora lusitaniae ATCC 42720
           RepID=C4XYJ5_CLAL4
          Length = 953

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 65/165 (39%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
 Frame = +2

Query: 47  AAGRATPGRMTPGRSPAGRFTPRMSPASPGY--AAMSPRFGGGLGGGPAGGAGAY--APA 214
           A G A P        PAG   P  SP SPG   A+ SP   G  G   A GA     +P 
Sbjct: 391 APGPAGPAGPAGPAGPAGPSGPAGSPGSPGSPGASGSPESPGSPGSPGASGAPGSPGSPG 450

Query: 215 SPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSP-SVGARGGPAA--GYASPQSPGYV 385
           SP+  + +PG   SP +P  A  SPG SPG SP SP S GA G P +     SP SPG  
Sbjct: 451 SPSSPSGAPGSPGSPGSPG-ASGSPG-SPG-SPGSPGSPGASGAPGSPGSPGSPGSPGAS 507

Query: 386 PTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
               +   PG+  +  +  SPSSP+ SP SP    AS     P S
Sbjct: 508 GAPGSPGSPGSPGSPGSPGSPSSPSGSPGSPGSPGASGSPGSPGS 552

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 59/169 (34%), Positives = 73/169 (43%), Gaps = 3/169 (1%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYA-AMSPRFGG--GLGGGPAGG 193
            SP   S       +PG      SP    +P  SP+SPG + + SP   G  G  G P   
Sbjct: 527  SPSSPSGSPGSPGSPGASGSPGSPGSPGSPG-SPSSPGSSESGSPGSPGSPGASGSPGSP 585

Query: 194  AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQS 373
                +P SP+  + SPG   SP +P  A  SPG SPG SP SP      G      SP S
Sbjct: 586  GSPGSPGSPSSPSGSPGSPSSPGSPG-ASGSPG-SPG-SPGSPGASGAPGSPGSPGSPGS 642

Query: 374  PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            PG   +  A   PG+  +  +  SPS    SP SP+   AS     P S
Sbjct: 643  PGSPGSPGASGSPGSPGSPGSPSSPSGSPGSPSSPSSPGASGSPGSPGS 691

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 62/172 (36%), Positives = 80/172 (46%), Gaps = 11/172 (6%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS--PASPGYAAMSPRFGGGLGGGPAGGA 196
            SP  S    +  ++PG      SP    +P  S  P SPG    SP    G  G P+  +
Sbjct: 666  SPSGSPGSPSSPSSPGASGSPGSPGSPGSPGASGSPGSPGSPG-SPSSPSGSPGSPSSPS 724

Query: 197  GAYAPASPAYMAT--SPGMGYSPSTPAL--AVSSPGYSPGYSPTSPSV-GARGGPAAGYA 361
               A  SP    +  SPG   SP +P    + SSP  SPG SP+SPS  GA G P     
Sbjct: 725  SPGASGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSGSPG-SPSSPSSPGASGSP----G 779

Query: 362  SPQSPGYVPTSPAYARPGTVVAAANVYSPSSP----AYSPFSPNYAAASSPA 505
            SP SPG    S A   PG+  +  +  SPSSP    + SP SP+ + + SP+
Sbjct: 780  SPGSPGSPGASGAPGAPGSPGSPGSPGSPSSPGSSESGSPSSPSASESGSPS 831

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 60/153 (39%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
 Frame = +2

Query: 62   TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG-GPAGGAGAY-APASPAYMAT 235
            +PG      SP+G      SP+SPG A+ SP   G  G  G +G  G+  +P SP+  + 
Sbjct: 703  SPGSPGSPSSPSGSPGSPSSPSSPG-ASGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSG 761

Query: 236  SPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPG 415
            SPG   SPS+P  A  SPG SPG SP SP      G      SP SPG  P+SP  +  G
Sbjct: 762  SPGSPSSPSSPG-ASGSPG-SPG-SPGSPGASGAPGAPGSPGSPGSPGS-PSSPGSSESG 817

Query: 416  TVVAAANVYSPSSPAYS----PFSPNYAAASSP 502
                     SPSSP+ S    P SP+ + + SP
Sbjct: 818  ---------SPSSPSASESGSPSSPSASESGSP 841

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 57/141 (40%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
           SP SPG    S   G     GPAG AG   PA PA           PS PA +  SPG S
Sbjct: 373 SPGSPGSPGASGAPGAPGAPGPAGPAGPAGPAGPA----------GPSGPAGSPGSPG-S 421

Query: 299 PGYSPTSPSVGARGGPAAGYA--SPQSPGYVPTSPAYA-----RPGTVVAAANVYSPSSP 457
           PG S +  S G+ G P A  A  SP SPG  P+SP+ A      PG+  A+ +  SP SP
Sbjct: 422 PGASGSPESPGSPGSPGASGAPGSPGSPG-SPSSPSGAPGSPGSPGSPGASGSPGSPGSP 480

Query: 458 AYSPFSPNYAAASSPAYQPPS 520
             SP SP  + A      P S
Sbjct: 481 G-SPGSPGASGAPGSPGSPGS 500

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 64/174 (36%), Positives = 81/174 (46%), Gaps = 8/174 (4%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS--PASPGYAAMSPRFGGGLGG-GPAGG 193
            SP  S    +   +PG      SP    +P  S  P SPG    SP   G  G  G +G 
Sbjct: 596  SPSGSPGSPSSPGSPGASGSPGSPGSPGSPGASGAPGSPGSPG-SPGSPGSPGSPGASGS 654

Query: 194  AGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
             G+  +P SP+  + SPG   SPS+P  A  SPG SPG SP SP      G      SP 
Sbjct: 655  PGSPGSPGSPSSPSGSPGSPSSPSSPG-ASGSPG-SPG-SPGSPGASGSPGSPGSPGSPS 711

Query: 371  SPGYVPTSPAY-ARPGTVVAAANVYSPSSP--AYSPFSP-NYAAASSPAYQPPS 520
            SP   P SP+  + PG   +  +  SP SP  + SP SP +  + SSP+  P S
Sbjct: 712  SPSGSPGSPSSPSSPGASGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSGSPGS 765

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 62/173 (35%), Positives = 79/173 (45%), Gaps = 4/173 (2%)
 Frame = +2

Query: 14  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
           AS SP    +  +  A+    +PG SP    +P  +P SPG    SP    G  G P   
Sbjct: 424 ASGSPESPGSPGSPGASGAPGSPG-SPGSPSSPSGAPGSPGSPG-SP----GASGSPGSP 477

Query: 194 AGAYAPASPAYMAT--SPGMGYSPSTPALAVSSPGYSPGYSPTSP-SVGARGGPAAGYAS 364
               +P SP       SPG   SP +P  A  +PG SPG SP SP S G+ G P++   S
Sbjct: 478 GSPGSPGSPGASGAPGSPGSPGSPGSPG-ASGAPG-SPG-SPGSPGSPGSPGSPSSPSGS 534

Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSP-SSPAYSPFSPNYAAASSPAYQPPS 520
           P SPG    S +   PG+  +  +  SP SS + SP SP    AS     P S
Sbjct: 535 PGSPGSPGASGSPGSPGSPGSPGSPSSPGSSESGSPGSPGSPGASGSPGSPGS 587

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 64/177 (36%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY--AAMSPRFGGGLG--GGPA- 187
            SP  S A  +  +     +PG SP    +P  SP SPG   A+ SP   G  G  G P+ 
Sbjct: 503  SPGASGAPGSPGSPGSPGSPG-SPGSPSSPSGSPGSPGSPGASGSPGSPGSPGSPGSPSS 561

Query: 188  -GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY--SPGYSPTSPSVGARGGPAAGY 358
             G + + +P SP     SPG   SP +P  +  SPG   SP  SP SPS     G +   
Sbjct: 562  PGSSESGSPGSPG----SPGASGSPGSPG-SPGSPGSPSSPSGSPGSPSSPGSPGASGSP 616

Query: 359  ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSP--AYSPFSP-NYAAASSPAYQPPS 520
             SP SPG    S A   PG+  +  +  SP SP  + SP SP +  + SSP+  P S
Sbjct: 617  GSPGSPGSPGASGAPGSPGSPGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSGSPGS 673

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--GPA 187
            AS SP    +  +  A+    +PG SP    +P  SP SPG A+ SP   G  G    P+
Sbjct: 612  ASGSPGSPGSPGSPGASGAPGSPG-SPGSPGSPG-SPGSPG-ASGSPGSPGSPGSPSSPS 668

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVS--SPGYSPGYSPTSPSVGARGGPAA--- 352
            G  G+ +  S    + SPG   SP +P  + S  SPG SPG SP+SPS G+ G P++   
Sbjct: 669  GSPGSPSSPSSPGASGSPGSPGSPGSPGASGSPGSPG-SPG-SPSSPS-GSPGSPSSPSS 725

Query: 353  --GYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
                 SP SPG   +  A   PG+  +  +  SPS    SP SP+   AS     P S
Sbjct: 726  PGASGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSGSPGSPSSPSSPGASGSPGSPGS 783

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 62/169 (36%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
 Frame = +2

Query: 38  SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPAS 217
           S + +G  +PG  +PG SP     P  +P +PG A      G     GPAG AG   PA 
Sbjct: 365 SGNGSGSGSPG--SPG-SPGASGAPG-APGAPGPA------GPAGPAGPAGPAGPSGPAG 414

Query: 218 PAYMATSPGMGYSPSTPAL--------AVSSPGYSPGYSPTSPSVGARGGPAAGYASPQS 373
                 SPG   SP +P          A  SPG SPG SP+SPS GA G P     SP S
Sbjct: 415 SPGSPGSPGASGSPESPGSPGSPGASGAPGSPG-SPG-SPSSPS-GAPGSPG----SPGS 467

Query: 374 PGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           PG   +  +   PG+  +     +P SP  SP SP    AS     P S
Sbjct: 468 PGASGSPGSPGSPGSPGSPGASGAPGSPG-SPGSPGSPGASGAPGSPGS 515

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 60/168 (35%), Positives = 78/168 (46%), Gaps = 6/168 (3%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
            SS  ++   +PG  +PG SP    +P  SP SPG    SP    G  G P+      A  
Sbjct: 560  SSPGSSESGSPG--SPG-SPGASGSPG-SPGSPGSPG-SPSSPSGSPGSPSSPGSPGASG 614

Query: 215  SPAYMAT--SPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVP 388
            SP    +  SPG   +P +P  +  SPG SPG SP SP      G      SP SP   P
Sbjct: 615  SPGSPGSPGSPGASGAPGSPG-SPGSPG-SPG-SPGSPGASGSPGSPGSPGSPSSPSGSP 671

Query: 389  TSPAY-ARPGTVVAAANVYSPSSP--AYSPFSP-NYAAASSPAYQPPS 520
             SP+  + PG   +  +  SP SP  + SP SP +  + SSP+  P S
Sbjct: 672  GSPSSPSSPGASGSPGSPGSPGSPGASGSPGSPGSPGSPSSPSGSPGS 719

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 54/164 (32%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
 Frame = +2

Query: 14   ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLG--GGPA 187
            AS SP    +  +  A+    +PG SP    +P  SP SP  +  SP   G  G  G P 
Sbjct: 728  ASGSPGSPGSPGSPGASGSPGSPG-SPGSPSSPSGSPGSPS-SPSSPGASGSPGSPGSPG 785

Query: 188  GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASP 367
                + AP +P     SPG   SP +P    SSPG S   SP+SPS    G         
Sbjct: 786  SPGASGAPGAPG----SPGSPGSPGSP----SSPGSSESGSPSSPSASESGS-------- 829

Query: 368  QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
                  P+SP+ +  G+  ++ +  SP SP  SP SP  +A+ S
Sbjct: 830  ------PSSPSASESGSPGSSGSPGSPGSPG-SPGSPGSSASGS 866

 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 54/151 (35%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
 Frame = +2

Query: 62   TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP 241
            +PG      SP+G      SP+SPG A+ SP   G  G   A GA   AP SP     SP
Sbjct: 749  SPGSPGSPSSPSGSPGSPSSPSSPG-ASGSPGSPGSPGSPGASGAPG-APGSPG----SP 802

Query: 242  GMGYSPSTPAL----AVSSPGYSPGYSPTSPSVGARGGPAAGYA--SPQSPGYVPTSPAY 403
            G   SPS+P      + SSP  S   SP+SPS    G P +  +  SP SPG  P SP  
Sbjct: 803  GSPGSPSSPGSSESGSPSSPSASESGSPSSPSASESGSPGSSGSPGSPGSPG-SPGSPGS 861

Query: 404  ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
            +  G+   + +     S    P S + A+ S
Sbjct: 862  SASGSGSGSGSGSGSGSANSGPGSGSSASGS 892

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 55/150 (36%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLG-GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVS--SP 289
           SP SPG A+ +P   G  G  GPAG AG   PA P+  A SPG   SP       S  SP
Sbjct: 376 SPGSPG-ASGAPGAPGAPGPAGPAGPAGPAGPAGPSGPAGSPGSPGSPGASGSPESPGSP 434

Query: 290 GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-------------RPGTVVAA 430
           G SPG S    S G+ G P++   +P SPG  P SP  +              PG   A 
Sbjct: 435 G-SPGASGAPGSPGSPGSPSSPSGAPGSPGS-PGSPGASGSPGSPGSPGSPGSPGASGAP 492

Query: 431 ANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            +  SP SP     SP  + A      P S
Sbjct: 493 GSPGSPGSPG----SPGASGAPGSPGSPGS 518

[212][TOP]
>UniRef100_Q5EXZ8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Periplaneta
           americana RepID=Q5EXZ8_PERAM
          Length = 97

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 46/98 (46%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
 Frame = +2

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
           Y+P SP+Y  +SP    S ST   + SSP YSP    YSPTSP       P++   SP S
Sbjct: 1   YSPTSPSYSPSSPQHTPSAST-RYSPSSPSYSPTSPTYSPTSPQYS----PSSSKYSPTS 55

Query: 374 PGYVPTSPAYARPG-TVVAAANVYSPSSPAYSPFSPNY 484
           P Y PTSP Y+    T   A   YSP+SP YSP SP Y
Sbjct: 56  PTYTPTSPNYSPSSPTYSPAVPGYSPTSPTYSPTSPAY 93

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY- 295
           SP SP Y+  SP+         +  + +Y+P SP Y  TSP   YSPS+   + +SP Y 
Sbjct: 2   SPTSPSYSPSSPQHTPSASTRYSPSSPSYSPTSPTYSPTSP--QYSPSSSKYSPTSPTYT 59

Query: 296 --SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAY 403
             SP YSP+SP+      PA    SP SP Y PTSPAY
Sbjct: 60  PTSPNYSPSSPTY----SPAVPGYSPTSPTYSPTSPAY 93

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
 Frame = +2

Query: 251 YSPSTPALAVSSPGYSPG----YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGT 418
           YSP++P+ + SSP ++P     YSP+SPS            SP SP Y PTSP Y+    
Sbjct: 1   YSPTSPSYSPSSPQHTPSASTRYSPSSPSY-----------SPTSPTYSPTSPQYS---- 45

Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
              +++ YSP+SP Y+P SPNY + SSP Y P
Sbjct: 46  --PSSSKYSPTSPTYTPTSPNY-SPSSPTYSP 74

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
           +P  SP SP Y+  SP++        +  +  Y+P SP Y  TSP   YSPS+P  + + 
Sbjct: 27  SPSYSPTSPTYSPTSPQY--------SPSSSKYSPTSPTYTPTSP--NYSPSSPTYSPAV 76

Query: 287 PGY---SPGYSPTSPS 325
           PGY   SP YSPTSP+
Sbjct: 77  PGYSPTSPTYSPTSPA 92

[213][TOP]
>UniRef100_A0LSV3 Putative uncharacterized protein n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LSV3_ACIC1
          Length = 439

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 60/165 (36%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
 Frame = +2

Query: 59  ATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATS 238
           + PG + PG +P    TP  +P +PG A   P  G   GGG    A  Y  A PAY A  
Sbjct: 60  SVPGSVPPGTAP----TP--APTAPGAA---PVGGATPGGGVPISAQDYQSAPPAYAAP- 109

Query: 239 PGMGYSPSTPALAVSSPGYSP-GYSPTSPSVGARGGPA-----AGYASP-----QSPGYV 385
                    PA   + PGY P GY+      G  G PA     AGY+ P      +PGY 
Sbjct: 110 ---------PAYPSTQPGYGPAGYAQGYTPAGYAGYPAPGTTPAGYSPPGTTPAATPGYP 160

Query: 386 PTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              P    PG V       SPSSP Y+     YAAAS+  Y PP+
Sbjct: 161 TPGPVPQAPGAVPGYVTPGSPSSPGYAAAPGGYAAASA-GYAPPT 204

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 62/180 (34%), Positives = 75/180 (41%), Gaps = 16/180 (8%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           +P    A   G ATPG   P  +   +  P    A P Y +  P      G GPAG A  
Sbjct: 74  APTAPGAAPVGGATPGGGVPISAQDYQSAPPAYAAPPAYPSTQP------GYGPAGYAQG 127

Query: 203 YAPASPA-YMA--TSPGMGYSPS-----------TPALAVSSPGYSPGY-SPTSPSVGAR 337
           Y PA  A Y A  T+P  GYSP            TP     +PG  PGY +P SPS    
Sbjct: 128 YTPAGYAGYPAPGTTPA-GYSPPGTTPAATPGYPTPGPVPQAPGAVPGYVTPGSPSSPGY 186

Query: 338 GGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPF-SPNYAAASSPAYQP 514
                GYA+  S GY P +   A P    AA+    PS  A  P  +P   A ++P  QP
Sbjct: 187 AAAPGGYAA-ASAGYAPPTGYAAAPAGYTAAS--APPSYAAVPPADAPTVTAEANPPEQP 243

[214][TOP]
>UniRef100_Q6ZJR1 DNA-directed RNA polymerase largest chain-like protein n=1
           Tax=Oryza sativa Japonica Group RepID=Q6ZJR1_ORYSJ
          Length = 138

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
 Frame = +2

Query: 233 TSPGMGYSPSTPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
           TSP   YSP++P+   SS  YSP   YSP+SP +      +  Y SP SP Y PTSP+Y+
Sbjct: 18  TSPN--YSPTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNY-SPTSPTYSPTSPSYS 74

Query: 407 RPGTVVAAANVYSPS---SPAYSPFSPNYAAASS-----PAYQPPS 520
           +P    +  + Y+ S   SP YSP SPNY+ + S     P Y P S
Sbjct: 75  QPSPSYSPTSPYTTSGGPSPDYSPTSPNYSPSGSYSPTAPGYSPSS 120

[215][TOP]
>UniRef100_B4R3H4 GD16605 n=1 Tax=Drosophila simulans RepID=B4R3H4_DROSI
          Length = 538

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
 Frame = +2

Query: 176 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGAR 337
           G  A  A  Y+PA+P+Y A +     +P+ P+  A ++P YS    P YS P +PS  A 
Sbjct: 73  GYSAPAAPVYSPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAP 132

Query: 338 GGPAAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQ 511
             P+  Y++P +P Y  P +P+Y+ P    AA +  +P++P+YS P +P+Y+A ++P+Y 
Sbjct: 133 AAPS--YSAPAAPSYSAPAAPSYSAP----AAQSYSAPAAPSYSAPAAPSYSAPAAPSYS 186

Query: 512 PPS 520
            P+
Sbjct: 187 APA 189

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 10/181 (5%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRAT--PGRMTPGRSPAGRFTPRMS-PASPGYAAMSPRFGGGLGG 178
           A  S+S   +S+ +A  A   P    P  S +    P  S PA+P Y+A  P +      
Sbjct: 197 AAPSYSAQKTSSYSAPAAPSYPAPAAPASSYSAPAGPSYSAPAAPSYSA--PSYSAPASS 254

Query: 179 GPAGGAGAY-APASPAYMA-TSPGMGYSPSTPALAVSSPGYSPGYSPT--SPSVGARGGP 346
             A  A AY APA+P+Y A  +P    S S    + +S  YS   +PT  +P   +   P
Sbjct: 255 YSAPKAPAYSAPAAPSYSAPAAPSYSSSASPSYSSPASSSYSAPAAPTYSAPKAQSYSAP 314

Query: 347 AA-GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPP 517
           AA  Y++P +P Y  P +P+Y+ P    AA +  +P++P+YS P S +Y+A ++P+Y  P
Sbjct: 315 AAPSYSAPAAPSYSAPAAPSYSAP----AAPSYSAPAAPSYSAPASSSYSAPAAPSYSAP 370

Query: 518 S 520
           +
Sbjct: 371 A 371

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 14/148 (9%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGY 295
           +PA+P Y+  +P +       PA  + + APA+P+Y A +     +P+ P+  A ++P Y
Sbjct: 76  APAAPVYSPAAPSY-----SAPASSSYS-APAAPSYSAPAAPSYSAPAAPSYSAPAAPSY 129

Query: 296 S----PGYS-PTSPSVGARGGP------AAGYASPQSPGY-VPTSPAYARPGTVVAAANV 439
           S    P YS P +PS  A   P      A  Y++P +P Y  P +P+Y+ P    AA + 
Sbjct: 130 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAQSYSAPAAPSYSAPAAPSYSAP----AAPSY 185

Query: 440 YSPSSPAYS-PFSPNYAAASSPAYQPPS 520
            +P++P+YS P +P+Y+A  + +Y  P+
Sbjct: 186 SAPAAPSYSAPAAPSYSAQKTSSYSAPA 213

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A  +P +        A
Sbjct: 138 SAPAAPSYSAPAAPSYSAPAAQSYSAPAAPSYS---APAAPSYSAPAAPSYS-------A 187

Query: 188 GGAGAY-APASPAYMA---TSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP--- 346
             A +Y APA+P+Y A   +S     +PS PA A  +  YS   +P  PS  A   P   
Sbjct: 188 PAAPSYSAPAAPSYSAQKTSSYSAPAAPSYPAPAAPASSYS---APAGPSYSAPAAPSYS 244

Query: 347 AAGYASPQSPGYVPTSPAYARPG----TVVAAANVYSPSSPAY-SPFSPNYAAASSPAYQ 511
           A  Y++P S    P +PAY+ P     +  AA +  S +SP+Y SP S +Y+A ++P Y 
Sbjct: 245 APSYSAPASSYSAPKAPAYSAPAAPSYSAPAAPSYSSSASPSYSSPASSSYSAPAAPTYS 304

Query: 512 PP 517
            P
Sbjct: 305 AP 306

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 15/185 (8%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGGP 184
           +A   P  S+  A   + P    P  S +    P  S PA+P Y+A  +P +        
Sbjct: 228 SAPAGPSYSAPAAPSYSAPSYSAPASSYSAPKAPAYSAPAAPSYSAPAAPSYSSSASPSY 287

Query: 185 AGGAGAY--APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARG 340
           +  A +   APA+P Y A       +P+ P+  A ++P YS    P YS P +PS  A  
Sbjct: 288 SSPASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPA 347

Query: 341 GPAAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS----PFSPNYAAASSPA 505
            P+  Y++P S  Y  P +P+Y+ P     AA  YS  +PA S    P +P+Y+A +S +
Sbjct: 348 APS--YSAPASSSYSAPAAPSYSAP-----AAPSYS--APASSSYSAPAAPSYSAPASQS 398

Query: 506 YQPPS 520
           Y  P+
Sbjct: 399 YSAPA 403

[216][TOP]
>UniRef100_A9U3I4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9U3I4_PHYPA
          Length = 291

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
 Frame = +2

Query: 26  PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY 205
           P  S+   A   TP    P  S     TP    +SP Y+  +P      GG P   + +Y
Sbjct: 53  PPPSTDPPATPYTPSYSPPVASDPSPVTPTPVYSSPPYSPGTPS-----GGSPVTPSPSY 107

Query: 206 A--PASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPG 379
           +  P SP   ++SP    +PS+P    SSP YSP  +P+SPS  A  GP+    +  SP 
Sbjct: 108 SSPPYSPTPSSSSP---TTPSSP--TYSSPPYSP--APSSPSPTAPSGPSPSSPTYSSPP 160

Query: 380 YVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           Y PT P+ + P +   ++  YSP+  + SP +P+  + SSP Y P
Sbjct: 161 YSPT-PSGSSPSSPTYSSPPYSPTPSSSSPTTPSSPSYSSPPYSP 204

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 20/173 (11%)
 Frame = +2

Query: 59  ATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGL--GGGPAGGAGAYA--PASPAY 226
           ATP   TP  SP     P  SP +P     SP +  G   GG P   + +Y+  P SP  
Sbjct: 61  ATP--YTPSYSPPVASDP--SPVTPTPVYSSPPYSPGTPSGGSPVTPSPSYSSPPYSPTP 116

Query: 227 MATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPT----- 391
            ++SP    +PS+P    SSP YSP  +P+SPS  A  GP+    +  SP Y PT     
Sbjct: 117 SSSSPT---TPSSPTY--SSPPYSP--APSSPSPTAPSGPSPSSPTYSSPPYSPTPSGSS 169

Query: 392 --SPAYARP--GTVVAAANVYSPSSPAYS-------PFSPNYAAASSPAYQPP 517
             SP Y+ P      ++++  +PSSP+YS       P  P+ +  SSP Y  P
Sbjct: 170 PSSPTYSSPPYSPTPSSSSPTTPSSPSYSSPPYSPTPSDPSPSTPSSPTYSSP 222

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPA-----GRFTPRMSPASPGYAAMSPRFGGGLG 175
           T S+SP ++S  +    TP   +P  SP         TP  S +SP Y+           
Sbjct: 65  TPSYSPPVASDPSPVTPTPVYSSPPYSPGTPSGGSPVTPSPSYSSPPYSPTPSSSSPTTP 124

Query: 176 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP--- 346
             P   +  Y+PA  +   T+P  G SPS+P    SSP YSP  S +SPS      P   
Sbjct: 125 SSPTYSSPPYSPAPSSPSPTAPS-GPSPSSPTY--SSPPYSPTPSGSSPSSPTYSSPPYS 181

Query: 347 ----AAGYASPQSPGY-------VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAA 493
               ++   +P SP Y        P+ P+ + P +   ++  YSP+    SP +P+    
Sbjct: 182 PTPSSSSPTTPSSPSYSSPPYSPTPSDPSPSTPSSPTYSSPPYSPTPSGPSPPTPSSPTY 241

Query: 494 SSPAYQP 514
           SSP Y P
Sbjct: 242 SSPPYSP 248

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 54/193 (27%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
 Frame = +2

Query: 2   INATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
           + ++  +SP   S  +    +P   +P  SP    +   +P+SP Y+  SP +       
Sbjct: 84  VYSSPPYSPGTPSGGSPVTPSPSYSSPPYSPTPSSSSPTTPSSPTYS--SPPYSPAPSSP 141

Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS-PGYSPTSPSVGARGGPAAGY 358
                   +P+SP Y  +SP   YSP+    + SSP YS P YSPT  S       +  Y
Sbjct: 142 SPTAPSGPSPSSPTY--SSPP--YSPTPSGSSPSSPTYSSPPYSPTPSSSSPTTPSSPSY 197

Query: 359 ASP-------------------QSPGYVPT--SPAYARPGTVVAAANVYSPSSPAYSPFS 475
           +SP                    SP Y PT   P+   P +   ++  YSP+    SP +
Sbjct: 198 SSPPYSPTPSDPSPSTPSSPTYSSPPYSPTPSGPSPPTPSSPTYSSPPYSPTPSGSSPTT 257

Query: 476 PNYAAASSPAYQP 514
           P+  + SSP Y P
Sbjct: 258 PSSPSYSSPPYSP 270

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 47/144 (32%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
 Frame = +2

Query: 92  PAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPA 271
           P+    P      P     +P +   +   P+        +SP Y   +P  G SP TP+
Sbjct: 46  PSLTLCPPPPSTDPPATPYTPSYSPPVASDPSPVTPTPVYSSPPYSPGTPSGG-SPVTPS 104

Query: 272 LAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVY 442
            + SSP YSP     SPT+PS      P    A P SP   PT+P+   P +   ++  Y
Sbjct: 105 PSYSSPPYSPTPSSSSPTTPSSPTYSSPPYSPA-PSSPS--PTAPSGPSPSSPTYSSPPY 161

Query: 443 SPSSPAYSPFSPNYAAASSPAYQP 514
           SP+    SP SP Y   SSP Y P
Sbjct: 162 SPTPSGSSPSSPTY---SSPPYSP 182

[217][TOP]
>UniRef100_A8JUV4 CG34333 n=1 Tax=Drosophila melanogaster RepID=A8JUV4_DROME
          Length = 578

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 27/198 (13%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGG 181
           A  S+S   SS+ +A  A         S +    P  S PAS  Y+A  +P +       
Sbjct: 125 AAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYS------ 178

Query: 182 PAGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS---------PT 316
            A  A +Y APA+P+Y A +     +P+ P+  A ++P YS    P YS         P 
Sbjct: 179 -APAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPSAPSYSAQKTSSYSAPA 237

Query: 317 SPSVGARGGPAAGYASPQSPGY-VPTSPAYARPG--------TVVAAANVYSPSSPAYS- 466
           +PS  A   PA+ Y++P  P Y  P +P+Y+ P         + + A +  +P++P+YS 
Sbjct: 238 APSYHAPAAPASSYSAPAGPSYSAPAAPSYSAPSYSAPASSYSALKAPSYSAPAAPSYSA 297

Query: 467 PFSPNYAAASSPAYQPPS 520
           P +P+Y++++SP+Y  P+
Sbjct: 298 PAAPSYSSSASPSYSSPA 315

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 16/150 (10%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGG-PAGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSP 289
           +PA+P Y+  +P +         A  A +Y APA+P+Y A +     +P+ P+  A +S 
Sbjct: 76  APAAPVYSPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASS 135

Query: 290 GYS----PGYS-PTSPSVGARGGP------AAGYASPQSPGY-VPTSPAYARPGTVVAAA 433
            YS    P YS P +PS  A   P      ++ Y++P +P Y  P +P+Y+ P    AA 
Sbjct: 136 SYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAP----AAP 191

Query: 434 NVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
           +  +P++P+YS P +P+Y+A ++P+Y  PS
Sbjct: 192 SYSAPAAPSYSAPAAPSYSAPAAPSYSAPS 221

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 18/131 (13%)
 Frame = +2

Query: 182 PAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGG 343
           PA   G  APA+P Y   +P    +P+ P+  A ++P YS    P YS P +PS  A   
Sbjct: 68  PAKDQGYSAPAAPVYSPAAPSYS-APAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAA 126

Query: 344 P------AAGYASPQSPGY-VPTSPAYARPG----TVVAAANVYSPSSPAYS-PFSPNYA 487
           P      ++ Y++P +P Y  P +P+Y+ P     +  A+++  +P++P+YS P +P+Y+
Sbjct: 127 PSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYS 186

Query: 488 AASSPAYQPPS 520
           A ++P+Y  P+
Sbjct: 187 APAAPSYSAPA 197

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
           +A  +P  S+  A   + P    P  S A + +   +PA+P Y A  P         PAG
Sbjct: 202 SAPAAPSYSAPAAPSYSAPS--APSYS-AQKTSSYSAPAAPSYHA--PAAPASSYSAPAG 256

Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS----PGYS-PTSPSVGARGGPAAG 355
            + + APA+P+Y A S     +P++   A+ +P YS    P YS P +PS  +   P+  
Sbjct: 257 PSYS-APAAPSYSAPSYS---APASSYSALKAPSYSAPAAPSYSAPAAPSYSSSASPS-- 310

Query: 356 YASPQSPGY-VPTSPAYARPG----TVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPP 517
           Y+SP S  Y  P +P Y+ P     +  AA +  +P++P+YS P S +Y+A ++P+Y  P
Sbjct: 311 YSSPASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAP 370

Query: 518 S 520
           +
Sbjct: 371 A 371

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGGP 184
           +A   P  S+  A   + P    P  S +    P  S PA+P Y+A  +P +        
Sbjct: 252 SAPAGPSYSAPAAPSYSAPSYSAPASSYSALKAPSYSAPAAPSYSAPAAPSYSSSASPSY 311

Query: 185 AGGAGAY--APASPAYMATSPGMGYSPSTPALAV------SSPGYSPGYSPTSPSVGARG 340
           +  A +   APA+P Y A       +P+ P+ +       S+P  S   +P +PS  A  
Sbjct: 312 SSPASSSYSAPAAPTYSAPKAQSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPA 371

Query: 341 GPAAGYASPQSPGY-VPTSPAYARPGTV-VAAANVYSPSSPAYS----PFSPNYAAASSP 502
            P+  Y++P +P Y  P S +Y+ P     +A    S S+PA S    P +P+Y+A ++P
Sbjct: 372 APS--YSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAP 429

Query: 503 AYQPPS 520
           +Y  P+
Sbjct: 430 SYSAPA 435

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 15/185 (8%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMS-PASPGYAA-MSPRFGGGLGGG 181
           A  S+S   SS+ +A  A         S +    P  S PA+P Y+A  +P +       
Sbjct: 157 AAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYS------ 210

Query: 182 PAGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP---A 349
            A  A +Y AP++P+Y A       +P+ P+    +   S   +P  PS  A   P   A
Sbjct: 211 -APAAPSYSAPSAPSYSAQKTSSYSAPAAPSYHAPAAPASSYSAPAGPSYSAPAAPSYSA 269

Query: 350 AGYASPQS-------PGY-VPTSPAYARPGTVVAAANVYSPSSPAY-SPFSPNYAAASSP 502
             Y++P S       P Y  P +P+Y+ P    AA +  S +SP+Y SP S +Y+A ++P
Sbjct: 270 PSYSAPASSYSALKAPSYSAPAAPSYSAP----AAPSYSSSASPSYSSPASSSYSAPAAP 325

Query: 503 AYQPP 517
            Y  P
Sbjct: 326 TYSAP 330

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGG-P 184
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A  +P +         
Sbjct: 336 SAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYS---APAAPSYSAPAAPSYSAPASSSYS 392

Query: 185 AGGAGAY-APASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGARGG 343
           A  A +Y APA+P+Y A +     +P+ P+  A ++P YS    P YS P +PS  A   
Sbjct: 393 APAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAS 452

Query: 344 PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
                A   S G    +  Y+ P T    +   S  SPA S +S   ++ +S  Y  P+ 
Sbjct: 453 SGYSAARAYSAGSAAPASGYSAPKTSSGYSAPASSGSPAASSYSAPASSTASSGYSAPAS 512

Query: 524 R 526
           +
Sbjct: 513 K 513

[218][TOP]
>UniRef100_UPI00004C0623 PREDICTED: similar to zinc finger protein 239 (predicted) isoform 1
           n=1 Tax=Canis lupus familiaris RepID=UPI00004C0623
          Length = 554

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 50/141 (35%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
           +P   P SPG+ + SPRF                P SP + + SPG  + P +P  A  S
Sbjct: 62  SPGFEPQSPGFESQSPRF---------------EPESPGFESRSPG--FVPPSPEFAPRS 104

Query: 287 P---GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAY--ARPGTVVAAANVYSPS 451
           P     SP + P SP              PQSPGY P SP Y    PG        Y P 
Sbjct: 105 PDSDSQSPEFEPQSPRY-----------EPQSPGYEPRSPGYEPKSPG--------YEPK 145

Query: 452 SPAYSPFSPNYAAASSPAYQP 514
           SP Y P SP Y  + SP Y+P
Sbjct: 146 SPGYEPRSPGY-ESQSPGYEP 165

[219][TOP]
>UniRef100_C6F1F6 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
           RepID=C6F1F6_PLAVI
          Length = 211

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 57/149 (38%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA--TSPGMG---------YSPST 265
           SP SP Y   +P  GGG   G  G    Y+P SP       +P M          YS ++
Sbjct: 2   SPTSPTYHLTNPASGGG-SSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60

Query: 266 PALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV--AA 430
           P  + +SP YSP    YSPTSP       P +   SP SP Y PTSP Y+    V    +
Sbjct: 61  PKXSPTSPKYSPTSPKYSPTSPKYS----PTSPKYSPTSPKYSPTSPQYSPSSPVPNNPS 116

Query: 431 ANVYSP---SSPAYSPFSPNYAAASSPAY 508
           +  YSP   +SP +SP SP Y + SSP Y
Sbjct: 117 SPHYSPYAIASPKFSPTSPAY-SISSPVY 144

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 49/132 (37%), Positives = 59/132 (44%), Gaps = 28/132 (21%)
 Frame = +2

Query: 203 YAPASPAYMATSPGMG------------YSPSTPA-------------LAVSSPGY---S 298
           Y+P SP Y  T+P  G            YSP++P               +V SP Y   S
Sbjct: 1   YSPTSPTYHLTNPASGGGSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTS 60

Query: 299 PGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
           P  SPTSP    +  P +   SP SP Y PTSP Y+        +  YSP+SP YSP SP
Sbjct: 61  PKXSPTSP----KYSPTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSPQYSPSSP 110

Query: 479 NYAAASSPAYQP 514
                SSP Y P
Sbjct: 111 VPNNPSSPHYSP 122

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 46/128 (35%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS 298
           S  SP Y+  SP+         +  +  Y+P SP Y  TSP   YSP++P  + +SP YS
Sbjct: 50  SVVSPVYSVTSPKX--------SPTSPKYSPTSPKYSPTSPK--YSPTSPKYSPTSPKYS 99

Query: 299 PGYSPTSPSVGARGGPAAGYASP---QSPGYVPTSPAYARPGTVV-----AAANVYSPSS 454
           P     SPS      P++ + SP    SP + PTSPAY+    V      A +    P S
Sbjct: 100 PTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQHPLS 159

Query: 455 PAYSPFSP 478
           PAY   SP
Sbjct: 160 PAYILQSP 167

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP+ S        T  + +P        +P+ SP SP Y+  SP+               
Sbjct: 53  SPVYSVTSPKXSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK--------------- 97

Query: 203 YAPASPAYMATSPGMGYSPSTP---ALAVSSPGY---SPGYSPTSPSVGARGGPAAGYAS 364
           Y+P SP Y  +SP +  +PS+P     A++SP +   SP YS +SP     G   +    
Sbjct: 98  YSPTSPQYSPSSP-VPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQH 156

Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYS-------PFSP 478
           P SP Y+  SP   +    +   +V+SP   A +       PFSP
Sbjct: 157 PLSPAYILQSPVQVKQH--IQDVSVFSPIQQANAEEVQNDDPFSP 199

[220][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
           Tax=Drosophila erecta RepID=Q1WKU4_DROER
          Length = 760

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 51/124 (41%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
 Frame = +2

Query: 53  GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
           G +TP  MTP  +P A   TPR        +AM+P    F        +G + +++PA P
Sbjct: 638 GGSTPS-MTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 696

Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
               +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 697 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 751

Query: 395 PAYA 406
           P YA
Sbjct: 752 PLYA 755

[221][TOP]
>UniRef100_B4I9T9 GM19220 n=1 Tax=Drosophila sechellia RepID=B4I9T9_DROSE
          Length = 506

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 17/132 (12%)
 Frame = +2

Query: 176 GGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL-AVSSPGYS----PGYS-PTSPSVGAR 337
           G PA  A  Y+PA+P+Y A +     +P+ P+  A ++P YS    P YS P S S  A 
Sbjct: 73  GYPAPAAPVYSPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPASSSYSAP 132

Query: 338 GGP------AAGYASPQSPGY-VPTSPAYARPG----TVVAAANVYSPSSPAYSPFSPNY 484
             P      A  Y++P +P Y  P +P+Y+ P     +  AA +  +P++P  +P +P+Y
Sbjct: 133 AAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAQSYSAPAAPSYSAPAAPYSAPAAPSY 192

Query: 485 AAASSPAYQPPS 520
           +A ++P+Y  P+
Sbjct: 193 SAPAAPSYSAPA 204

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRAT--PGRMTPGRSPAGRFTPRMS-PASPGYAAMSPRFGGGLGG 178
           A  S+S   +S+ +A  A   P    P  S +    P  S PA+P Y+A  P +      
Sbjct: 204 AAPSYSAQKTSSYSAPAAPSYPAPAAPASSYSAPAGPSYSAPAAPSYSA--PSYSAPASS 261

Query: 179 GPAGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAG 355
             A  A AY APA+P+Y A +  +  S ++P  + SSP  S   +P +P+       A  
Sbjct: 262 YSAPKASAYSAPAAPSYSAPAAPLYSSSASP--SYSSPASSSYSAPAAPTYSV--PKAQS 317

Query: 356 YASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
           Y++P +P Y  P +P+Y+ P    A+++  +P++P+YS P S +Y+A ++P+Y  P+
Sbjct: 318 YSAPAAPSYSAPAAPSYSAP----ASSSYSAPAAPSYSAPASQSYSAPAAPSYSAPA 370

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 28/200 (14%)
 Frame = +2

Query: 5   NATASFSPIMSSADAAGRATPGRMTPGRSPAG------RFTPRMSPASPGYAA-MSPRFG 163
           N+ +S+SP      A  +  P    P  SPA         +   +PA+P Y+A  +P + 
Sbjct: 61  NSQSSYSP------AKDQGYPAPAAPVYSPAAPSYSAPASSSYSAPAAPSYSAPAAPSYS 114

Query: 164 GGLGGGPAGGAGAY--APASPAYMATSPGMGYSPSTPAL-AVSSPGYS--PGYSPTSPSV 328
                  +  A +   APA+P+Y A +     +P+ P+  A ++P YS     S ++P+ 
Sbjct: 115 APAAPSYSAPASSSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAPSYSAPAAQSYSAPAA 174

Query: 329 GARGGPAAGYASPQSPGY-VPTSPAYARPG------------TVVAAANVYSPSSPAYS- 466
            +   PAA Y++P +P Y  P +P+Y+ P             +  AA +  +P++PA S 
Sbjct: 175 PSYSAPAAPYSAPAAPSYSAPAAPSYSAPAAPSYSAQKTSSYSAPAAPSYPAPAAPASSY 234

Query: 467 --PFSPNYAAASSPAYQPPS 520
             P  P+Y+A ++P+Y  PS
Sbjct: 235 SAPAGPSYSAPAAPSYSAPS 254

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 13/182 (7%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGGLGGGPA 187
           +A  +P  S+  A   + P   +     A  ++   +PA+P Y+A  +P          A
Sbjct: 138 SAPAAPSYSAPAAPSYSAPAAPSYSAPAAQSYS---APAAPSYSAPAAPYSAPAAPSYSA 194

Query: 188 GGAGAY-APASPAYMA---TSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP--- 346
             A +Y APA+P+Y A   +S     +PS PA A  +  YS   +P  PS  A   P   
Sbjct: 195 PAAPSYSAPAAPSYSAQKTSSYSAPAAPSYPAPAAPASSYS---APAGPSYSAPAAPSYS 251

Query: 347 AAGYASPQSPGYVPTSPAY---ARPGTVVAAANVYSPS-SPAY-SPFSPNYAAASSPAYQ 511
           A  Y++P S    P + AY   A P     AA +YS S SP+Y SP S +Y+A ++P Y 
Sbjct: 252 APSYSAPASSYSAPKASAYSAPAAPSYSAPAAPLYSSSASPSYSSPASSSYSAPAAPTYS 311

Query: 512 PP 517
            P
Sbjct: 312 VP 313

[222][TOP]
>UniRef100_Q0UCC9 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0UCC9_PHANO
          Length = 351

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 60/196 (30%), Positives = 74/196 (37%), Gaps = 55/196 (28%)
 Frame = +2

Query: 98  GRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM----GYSPST 265
           G  +PR SP +P +A  SP +  GL            P +P Y  T+P       YSP+ 
Sbjct: 135 GATSPRYSPPTPHFAPRSPSYAPGL-----------PPTTPTYRPTTPTFIDLTYYSPTP 183

Query: 266 PALAVSSPGY-----------------SPGYSPTSPSV-----GARGG---PAAGYASPQ 370
           P L   SP Y                 SPGY+PTSP +     GA      PA+   S  
Sbjct: 184 PILMPESPTYTPPSPRYYPASFEINLLSPGYAPTSPGIRSPTYGAPSPDLEPASSSLSLT 243

Query: 371 SPGYVPTSPAYARPGTVVAAANV----------------YSPSSPAYSPFSPNYAAA--- 493
           SP Y PTSP +    T     +                 Y P+SP YSP SP    +   
Sbjct: 244 SPTYTPTSPHFTPTSTPYVRTSPSFYRPSGSRSPSFYRPYGPASPTYSPTSPVIPTSIGS 303

Query: 494 -------SSPAYQPPS 520
                   SP Y PPS
Sbjct: 304 PPINFTLGSPTYSPPS 319

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 50/165 (30%), Positives = 63/165 (38%), Gaps = 16/165 (9%)
 Frame = +2

Query: 74  MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM-------- 229
           +TP R      +P + P +  Y   SPR               Y+PA+P           
Sbjct: 89  VTPVRRYLDPISPGLRPTTSTYTPASPR---------------YSPATPKIRSPRLTMLE 133

Query: 230 --ATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAY 403
             ATSP   YSP TP  A  SP Y+PG  PT+P+                  Y PT+P +
Sbjct: 134 DGATSPR--YSPPTPHFAPRSPSYAPGLPPTTPT------------------YRPTTPTF 173

Query: 404 ARPGTVVAAANVYSPSSPAYSPFSPNYAAAS------SPAYQPPS 520
                      +  P SP Y+P SP Y  AS      SP Y P S
Sbjct: 174 IDLTYYSPTPPILMPESPTYTPPSPRYYPASFEINLLSPGYAPTS 218

[223][TOP]
>UniRef100_UPI0000DC19F8 UPI0000DC19F8 related cluster n=1 Tax=Rattus norvegicus
           RepID=UPI0000DC19F8
          Length = 417

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 64/175 (36%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
 Frame = +2

Query: 53  GRA--TPGR---MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPAS 217
           GRA  +PGR   ++PGR+P    +P  +P SPG A +SP        G    +   AP S
Sbjct: 45  GRAPVSPGRRAPVSPGRAPV---SPGRAPVSPGRAPVSP--------GTVPVSPGRAPVS 93

Query: 218 PAYMATSPG------MGYSPSTPALAVSSPG---YSPGYSPTSPS---VGARGGPAAGYA 361
           P     SPG       G +P +P  A  SPG    SPG +P SP    V     P +   
Sbjct: 94  PGRAPVSPGERAPVSPGRAPVSPGRAPVSPGRAPVSPGRAPVSPGRVPVSPGRAPVSPGR 153

Query: 362 SPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           +P SPG  P SP  A   PGTV  +     P SP  +P SP  A   SP   P S
Sbjct: 154 APVSPGRAPVSPGRAPVSPGTVPVSPGTV-PVSPGRAPVSPGRAPV-SPGRAPVS 206

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 59/162 (36%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
 Frame = +2

Query: 74  MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGM-- 247
           ++PGR+P    +P  +P SPG A +SP        G A  +   AP SP  +  SPG   
Sbjct: 184 VSPGRAPV---SPGRAPVSPGRAPVSP--------GRAPVSPGRAPVSPGTVPVSPGRAP 232

Query: 248 ---GYSPSTPALAVSSPG---YSPGYSPTSPS---VGARGGPAAGYASPQSPGYVPTSPA 400
              G +P +P  A  SPG    SPG +P SP    V     P +   +P SPG  P SP 
Sbjct: 233 VSPGRAPVSPGRAPVSPGRAPVSPGRAPVSPGTVPVSPGRAPVSPGRAPVSPGRAPVSPG 292

Query: 401 YA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            A   PGTV  +     P SP   P SP  A   SP   P S
Sbjct: 293 RAPVSPGTVPVSPGTV-PVSPGTVPVSPGRAPV-SPGRAPVS 332

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 57/154 (37%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
 Frame = +2

Query: 74  MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGY 253
           ++PGR+P    +P  +P SPG A +SP      G  P    G  AP SP     SPG   
Sbjct: 21  VSPGRAPV---SPGRAPVSPGRAPVSP------GRAPVS-PGRRAPVSPGRAPVSPGR-- 68

Query: 254 SPSTPALAVSSPG---YSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA--RPGT 418
           +P +P  A  SPG    SPG +P SP    R   + G  +P SPG  P SP  A   PG 
Sbjct: 69  APVSPGRAPVSPGTVPVSPGRAPVSPG---RAPVSPGERAPVSPGRAPVSPGRAPVSPGR 125

Query: 419 VVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              +    +P SP   P SP  A   SP   P S
Sbjct: 126 APVSPG-RAPVSPGRVPVSPGRAPV-SPGRAPVS 157

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 45/115 (39%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
 Frame = +2

Query: 206 APASPAYMATSPGM-----GYSPSTPALAVSSPG---YSPGYSPTSPSVGARGGPAAGYA 361
           AP SP  +  SPG      G +P +P  A  SPG    SPG +P SP    R  P +   
Sbjct: 5   APVSPGTVPVSPGTVPVSPGRAPVSPGRAPVSPGRAPVSPGRAPVSPG---RRAPVSPGR 61

Query: 362 SPQSPGYVPTSPAYA--RPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           +P SPG  P SP  A   PGTV  +    +P SP  +P SP   A  SP   P S
Sbjct: 62  APVSPGRAPVSPGRAPVSPGTVPVSPG-RAPVSPGRAPVSPGERAPVSPGRAPVS 115

[224][TOP]
>UniRef100_Q4D199 Putative uncharacterized protein n=1 Tax=Trypanosoma cruzi
           RepID=Q4D199_TRYCR
          Length = 320

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 48/147 (32%), Positives = 57/147 (38%), Gaps = 18/147 (12%)
 Frame = +2

Query: 86  RSPAGRFTPRMSPASPGYAAMSPRFGGGLGG--GPAGGAGA----YAPASPAYMATSPGM 247
           +S    +     P  PGY A  P +G    G   P  G GA    Y    P Y A  PG 
Sbjct: 2   KSDGNSYPYSYGPPQPGYGAPQPGYGPPQPGYGAPQPGYGAPQPEYGSPQPGYGAPQPGY 61

Query: 248 G-----YSPSTPALAVSSPGYS---PGYSPTSPSVG----ARGGPAAGYASPQSPGYVPT 391
           G     Y    P      PGY    PGY P  P  G      G P  GY  PQ PGY P 
Sbjct: 62  GAPQPEYGSPQPGYGAPQPGYGAPQPGYGPPQPEYGPPQPGYGAPQPGYGPPQ-PGYGPP 120

Query: 392 SPAYARPGTVVAAANVYSPSSPAYSPF 472
            P Y +P +  A     +P+ PA + +
Sbjct: 121 QPEYGKPASGNALPYTNTPALPAQASY 147

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 42/113 (37%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
 Frame = +2

Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYS---PGYSPTSPSVGAR----GGPAAGY 358
           +Y P  P Y A  PG  Y P  P      PGY    P Y    P  GA     G P   Y
Sbjct: 11  SYGPPQPGYGAPQPG--YGPPQPGYGAPQPGYGAPQPEYGSPQPGYGAPQPGYGAPQPEY 68

Query: 359 ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPP 517
            SPQ PGY    P Y  P         Y P  P Y P  P Y  A  P Y PP
Sbjct: 69  GSPQ-PGYGAPQPGYGAPQPG------YGPPQPEYGPPQPGY-GAPQPGYGPP 113

[225][TOP]
>UniRef100_Q16EB2 Putative uncharacterized protein n=1 Tax=Aedes aegypti
           RepID=Q16EB2_AEDAE
          Length = 795

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
 Frame = +2

Query: 35  SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
           + ++  G   PG   P    A  +    +PA+P Y A +       G   A   GA  PA
Sbjct: 213 AKSEDGGVVQPGYGAPAAPAAPAYGSHAAPAAPDYGAHAAPAAPAYGAPAAPAYGA--PA 270

Query: 215 SPAYMATSP---GMGYSPSTPAL-AVSSPGYSPGYSPTSPSVGARGGPAA-GYASPQSPG 379
           +PAY A +    G   +P+ PA  A ++P Y    +P +P+ GA   PA   Y +  +P 
Sbjct: 271 APAYGAPAAPAYGAHATPAAPAYGAHAAPAYGSHAAPAAPAYGAHAAPAVPAYGAHAAPA 330

Query: 380 Y----VPTSPAY---ARPGTVVAAANVY----SPSSPAYSPF-SPNYAAASSPAY 508
           Y     P +PAY   A PG    AA+ Y    +P+ P Y    +P Y A ++P Y
Sbjct: 331 YGAHAAPAAPAYGAHAGPGCATHAASAYGAHIAPAGPIYGAHAAPAYGAHAAPVY 385

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
 Frame = +2

Query: 179 GPAG----GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP 346
           GP G        Y    PA   +    GY   +    V  PGY    +P +P+ G+   P
Sbjct: 183 GPTGIHCDNCHIYHGDKPAEAKSEGSEGYGAKSEDGGVVQPGYGAPAAPAAPAYGSHAAP 242

Query: 347 AA----GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAY----SPFSPNYAAASS 499
           AA     +A+P +P Y  P +PAY  P    AA    +P++PAY    +P +P Y A ++
Sbjct: 243 AAPDYGAHAAPAAPAYGAPAAPAYGAP----AAPAYGAPAAPAYGAHATPAAPAYGAHAA 298

Query: 500 PAY 508
           PAY
Sbjct: 299 PAY 301

[226][TOP]
>UniRef100_UPI00017932FD PREDICTED: similar to Cuticular protein 76Bd CG9299-PB n=1
           Tax=Acyrthosiphon pisum RepID=UPI00017932FD
          Length = 670

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 65/192 (33%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPG-RSPAG-RFTP-RMSPASPGYAAMSPRFGGGLGG 178
           +++S+S    SA A   A P    P   SPA  +++P   S A+P YA   P +      
Sbjct: 239 SSSSYSSSSYSAPAVSYAVP---EPNYASPAAPKYSPVSYSTAAPSYAVPEPVYA----- 290

Query: 179 GPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS----PGYSPTSPSVGARGG- 343
                    +PA+P Y   S    YS + P+ AV  P Y+    P YSP S S  A    
Sbjct: 291 ---------SPAAPKYSPVS----YSTAAPSYAVPEPVYASPAAPKYSPVSYSTPAPSYA 337

Query: 344 -PAAGYASPQSPGYVPTS-----PAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS-- 499
            P   YASP +P Y P S     P+YA P  V A+A  YS  +P Y P S N  ++SS  
Sbjct: 338 VPEPVYASPAAPKYSPVSYSTPAPSYAVPEPVYASAPKYSTPAPKYQPSSYNSYSSSSYK 397

Query: 500 ---PAYQPPSRR 526
              P Y  P+ +
Sbjct: 398 AAKPEYSAPAHK 409

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 60/190 (31%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
           +A   P  S A AA  ++    TP  S A    P  S AS  Y+   P++        + 
Sbjct: 147 SAPAKPAYSPAPAA-YSSSSYSTPAPSYAVP-NPSYSSASASYS--QPKYSPSSYSSSSY 202

Query: 191 GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYS-PGYSPTSPSVGARGGPAAGYA-- 361
            + +Y+ A+P+Y    P   YSP+   ++ S P YS P YS +S S  +   PA  YA  
Sbjct: 203 SSSSYSTAAPSYAV--PSQSYSPAP--VSYSQPKYSAPSYSSSSYSSSSYSAPAVSYAVP 258

Query: 362 -----SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS------------PNYAA 490
                SP +P Y P S + A P   V      SP++P YSP S            P YA+
Sbjct: 259 EPNYASPAAPKYSPVSYSTAAPSYAVPEPVYASPAAPKYSPVSYSTAAPSYAVPEPVYAS 318

Query: 491 ASSPAYQPPS 520
            ++P Y P S
Sbjct: 319 PAAPKYSPVS 328

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 66/196 (33%), Positives = 87/196 (44%), Gaps = 27/196 (13%)
 Frame = +2

Query: 14  ASFSPIMSSADAAGRATPGRMTPGRS----PAGRFTPRMSPASPGYAAMSPRFGGGLGGG 181
           +S+S    S+ +   A P    P +S    P     P+ S  +P Y++ S  +       
Sbjct: 195 SSYSSSSYSSSSYSTAAPSYAVPSQSYSPAPVSYSQPKYS--APSYSSSS--YSSSSYSA 250

Query: 182 PAGGAGAYAP--ASPAYMATSPGMGYSPSTPALAVSSPGYS----PGYSPTSPSVGARGG 343
           PA       P  ASPA    SP + YS + P+ AV  P Y+    P YSP S S  A   
Sbjct: 251 PAVSYAVPEPNYASPAAPKYSP-VSYSTAAPSYAVPEPVYASPAAPKYSPVSYSTAAPSY 309

Query: 344 --PAAGYASPQSPGYVPTS-----PAYARPGTVVAAANVYSPSSPAYSPFS-----PNYA 487
             P   YASP +P Y P S     P+YA P  V A     SP++P YSP S     P+YA
Sbjct: 310 AVPEPVYASPAAPKYSPVSYSTPAPSYAVPEPVYA-----SPAAPKYSPVSYSTPAPSYA 364

Query: 488 A-----ASSPAYQPPS 520
                 AS+P Y  P+
Sbjct: 365 VPEPVYASAPKYSTPA 380

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 60/200 (30%), Positives = 82/200 (41%), Gaps = 29/200 (14%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
           A A++S    S  A   A P       S A    P+ SP+S   ++ S           A
Sbjct: 157 APAAYSSSSYSTPAPSYAVPNPSYSSAS-ASYSQPKYSPSSYSSSSYSSSSYSTAAPSYA 215

Query: 188 GGAGAYAPA----------SPAYMATS-PGMGYSPSTPALAVSSPGYS----PGYSPTSP 322
             + +Y+PA          +P+Y ++S     YS    + AV  P Y+    P YSP S 
Sbjct: 216 VPSQSYSPAPVSYSQPKYSAPSYSSSSYSSSSYSAPAVSYAVPEPNYASPAAPKYSPVSY 275

Query: 323 SVGARGG--PAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS------- 475
           S  A     P   YASP +P Y P S + A P   V      SP++P YSP S       
Sbjct: 276 STAAPSYAVPEPVYASPAAPKYSPVSYSTAAPSYAVPEPVYASPAAPKYSPVSYSTPAPS 335

Query: 476 -----PNYAAASSPAYQPPS 520
                P YA+ ++P Y P S
Sbjct: 336 YAVPEPVYASPAAPKYSPVS 355

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
 Frame = +2

Query: 80  PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSP 259
           P  SPA   + + S +S   A  SP           G A  Y+ A+P+Y A S     S 
Sbjct: 451 PAYSPAAYTSSKQSYSSAPIAVYSPV-------ASYGPAPEYS-AAPSYSAPSYSASQSY 502

Query: 260 STPALAVSSPGY-SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAAN 436
            + + + ++P Y SP Y+P      A   PAA   +P +P Y P +P+YA       AA 
Sbjct: 503 QSASYSAAAPSYPSPSYAPAPAPAYA---PAAQSYAPAAPSYAPAAPSYA------PAAP 553

Query: 437 VYSPSSPAYSPFSPNYAAASSPA 505
            Y+P++PAY P + +YA A + A
Sbjct: 554 SYAPAAPAYGPAAQSYAPAKTYA 576

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 54/178 (30%), Positives = 78/178 (43%), Gaps = 8/178 (4%)
 Frame = +2

Query: 14  ASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG 193
           A F P   S +AA  + P    P  S      P  S  +P Y+A S  +       P+  
Sbjct: 59  AYFKP---SYEAASYSAPSYSAPSYSAPSYSAPSYS--APSYSAAS--YSSASYSAPSYS 111

Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPA--AGYASP 367
           A +YA   P+Y         SPSTP    SSP Y+  Y P   +  A   PA     A+ 
Sbjct: 112 AQSYAVPDPSYA--------SPSTPKY--SSPSYTNNYKPAKAAYSAPAKPAYSPAPAAY 161

Query: 368 QSPGYVPTSPAYARPGTVVAAANV------YSPSSPAYSPFSPNYAAASSPAYQPPSR 523
            S  Y   +P+YA P    ++A+       YSPSS + S +S +  + ++P+Y  PS+
Sbjct: 162 SSSSYSTPAPSYAVPNPSYSSASASYSQPKYSPSSYSSSSYSSSSYSTAAPSYAVPSQ 219

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
 Frame = +2

Query: 110 PRMSPASPGYAAMSPRFGG--GLGGGPAGGAGAYAPASPAYMAT-----SPGMGYSPS-- 262
           P+       Y   +P +         PA    AY  +  +Y +      SP   Y P+  
Sbjct: 425 PKCDEHEQEYVTKAPSYDSKQSYAPAPAYSPAAYTSSKQSYSSAPIAVYSPVASYGPAPE 484

Query: 263 -TPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAA 433
            + A + S+P YS    Y   S S  A   P+  YA   +P Y P + +YA       AA
Sbjct: 485 YSAAPSYSAPSYSASQSYQSASYSAAAPSYPSPSYAPAPAPAYAPAAQSYA------PAA 538

Query: 434 NVYSPSSPAYSPFSPNYAAASSPAYQPPSR 523
             Y+P++P+Y+P +P+YA A +PAY P ++
Sbjct: 539 PSYAPAAPSYAPAAPSYAPA-APAYGPAAQ 567

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 22/178 (12%)
 Frame = +2

Query: 53  GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMA 232
           G + P +  P +S   +     +PA+P  A   P +       P+  A +Y+  +P+Y A
Sbjct: 30  GCSHPPKYGPSKSDYTQSLVSYAPAAPKPAYFKPSYEAASYSAPSYSAPSYS--APSYSA 87

Query: 233 TSPGMGYSPSTPALAVSSPGYS-PGYSPTSPSVGARGGPAAGYASPQSPGY--------- 382
            S     +PS  A + SS  YS P YS  S +V     P   YASP +P Y         
Sbjct: 88  PSYS---APSYSAASYSSASYSAPSYSAQSYAV-----PDPSYASPSTPKYSSPSYTNNY 139

Query: 383 --------VPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS----PAYQPPS 520
                    P  PAY+ P     +++ YS  +P+Y+  +P+Y++AS+    P Y P S
Sbjct: 140 KPAKAAYSAPAKPAYS-PAPAAYSSSSYSTPAPSYAVPNPSYSSASASYSQPKYSPSS 196

[227][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
            Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
          Length = 766

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 60/146 (41%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
 Frame = +2

Query: 98   GRFTPRMSPA-SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYM--ATSPGMGYSPS-T 265
            G  TP M+P  +P     +PR+       P G   A  P  P++   A S   G SPS +
Sbjct: 638  GGSTPSMTPPMTPWVNCNTPRYFS-----PPGHVSAMTPGGPSFSPSAASDASGMSPSWS 692

Query: 266  PALAVSSPGYSPG-----YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAA 430
            PA   SSP  SPG     Y P SPSV              SP Y PTSP Y       A+
Sbjct: 693  PAHPGSSPS-SPGPSMSPYFPASPSV--------------SPSYSPTSPNYTASSPGGAS 737

Query: 431  ANVYSPSSPAYSPFSPNYAAASSPAY 508
             N YSPSSP YSP SP YA+A SP Y
Sbjct: 738  PN-YSPSSPNYSPTSPLYASA-SPRY 761

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 50/124 (40%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
 Frame = +2

Query: 53  GRATPGRMTPGRSP-AGRFTPRMSPASPGYAAMSP---RFGGGLGGGPAGGAGAYAPASP 220
           G +TP  MTP  +P     TPR        +AM+P    F        +G + +++PA P
Sbjct: 638 GGSTPS-MTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHP 696

Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQSPGYVPTS 394
               +SPG   SP  PA    SP  SP YSPTSP+  A   GG +  Y SP SP Y PTS
Sbjct: 697 GSSPSSPGPSMSPYFPA----SPSVSPSYSPTSPNYTASSPGGASPNY-SPSSPNYSPTS 751

Query: 395 PAYA 406
           P YA
Sbjct: 752 PLYA 755

[228][TOP]
>UniRef100_C6F0A3 RNA polymerase II (Fragment) n=1 Tax=Plasmodium falciparum
           RepID=C6F0A3_PLAFA
          Length = 195

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 49/130 (37%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
 Frame = +2

Query: 107 TPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSS 286
           +P  S  SP Y+  SP+               Y+P SP Y  TSP   YSP++P  + +S
Sbjct: 37  SPVYSVTSPKYSPTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTS 79

Query: 287 PGYSPG---YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVYSP 448
           P YSP    YSPTSP       P     S  SP + PTSPAY+    V       N + P
Sbjct: 80  PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQP 139

Query: 449 SSPAYSPFSP 478
            SPAY   SP
Sbjct: 140 MSPAYILQSP 149

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 48/110 (43%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
 Frame = +2

Query: 203 YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYASPQS 373
           Y   SP Y  TSP   YSP++P  + +SP YSP    YSPTSP             SP S
Sbjct: 33  YNVMSPVYSVTSPK--YSPTSPKYSPTSPKYSPTSPKYSPTSPKY-----------SPTS 79

Query: 374 PGYVPTSPAYARPGTV---VAAANV--YSPSSPAYSPFSPNYAAASSPAY 508
           P Y PTSP Y+    V   +A+ N   YS +SP +SP SP Y + SSP Y
Sbjct: 80  PKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAY-SISSPVY 128

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 48/120 (40%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
 Frame = +2

Query: 203 YAPASPAYMATSPGMGYSPSTPA-----------LAVSSPGYS---PGYSPTSPSVGARG 340
           Y+P SP Y A +    YSP++P              V SP YS   P YSPTSP      
Sbjct: 1   YSPTSPTYNANNAY--YSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYS--- 55

Query: 341 GPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
            P +   SP SP Y PTSP Y+        +  YSP+SP YSP SP     +SP Y P S
Sbjct: 56  -PTSPKYSPTSPKYSPTSPKYS------PTSPKYSPTSPKYSPTSPVAQNIASPNYSPYS 108

[229][TOP]
>UniRef100_C6F1F5 RNA polymerase II (Fragment) n=1 Tax=Plasmodium fragile
           RepID=C6F1F5_PLAFR
          Length = 210

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 55/152 (36%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
 Frame = +2

Query: 119 SPASPGYAAMSPRFGGGLGG-----------GPAGGAGAYAP--------ASPAYMATSP 241
           SP SP Y   +    GG  G            P    G   P         SP Y  TSP
Sbjct: 2   SPTSPTYHLSNNANAGGSAGLNDPKSFYSPTSPTNQLGEMNPNMMKYHSVVSPVYSVTSP 61

Query: 242 GMGYSPSTPALAVSSPGY---SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARP 412
              YSP++P  + +SP Y   SP YSPTSP       P +   SP SP Y PTSP    P
Sbjct: 62  K--YSPTSPKYSPTSPQYMPTSPKYSPTSPKYS----PTSPKYSPTSPQYSPTSPIPNNP 115

Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAY 508
            +     + Y+ +SP +SP SP Y + SSP Y
Sbjct: 116 SS--PHYSPYAIASPKFSPTSPAY-SISSPVY 144

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 57/163 (34%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
 Frame = +2

Query: 35  SSADAAGRATPGRMTPGRSPA---GRFTPRM----SPASPGYAAMSPRFGGGLGGGPAGG 193
           ++  +AG   P       SP    G   P M    S  SP Y+  SP++        +  
Sbjct: 15  NAGGSAGLNDPKSFYSPTSPTNQLGEMNPNMMKYHSVVSPVYSVTSPKY--------SPT 66

Query: 194 AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG---YSPTSPSVGARGGPAAGYAS 364
           +  Y+P SP YM TSP   YSP++P  + +SP YSP    YSPTSP       P     +
Sbjct: 67  SPKYSPTSPQYMPTSPK--YSPTSPKYSPTSPKYSPTSPQYSPTSPIPNNPSSPHYSPYA 124

Query: 365 PQSPGYVPTSPAYARPGTVV-AAANVYS----PSSPAYSPFSP 478
             SP + PTSPAY+    V   +AN  +    P SPAY   SP
Sbjct: 125 IASPKFSPTSPAYSISSPVYDRSANARNKNQHPLSPAYILQSP 167

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 51/140 (36%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
 Frame = +2

Query: 137 YAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPAL----AVSSPGYS-- 298
           Y+  SP +         G AG   P S  Y  TSP        P +    +V SP YS  
Sbjct: 1   YSPTSPTYHLSNNANAGGSAGLNDPKS-FYSPTSPTNQLGEMNPNMMKYHSVVSPVYSVT 59

Query: 299 -PGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
            P YSPTSP             SP SP Y+PTSP Y+        +  YSP+SP YSP S
Sbjct: 60  SPKYSPTSPKY-----------SPTSPQYMPTSPKYS------PTSPKYSPTSPKYSPTS 102

Query: 476 PNYAAA-------SSPAYQP 514
           P Y+         SSP Y P
Sbjct: 103 PQYSPTSPIPNNPSSPHYSP 122

[230][TOP]
>UniRef100_B5DKF7 GA22863 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5DKF7_DROPS
          Length = 610

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
 Frame = +2

Query: 119 SPASPGYAA-MSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGY 295
           +PA+P Y+A  SP +        A  A +Y+    +Y +T+P    +P++   A ++P Y
Sbjct: 215 APAAPSYSAPASPNYS-------APAAQSYSEPKSSYSSTAPSSYSAPASSYSAPAAPSY 267

Query: 296 SPGYSPT--SPSVGARGGPAA-GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAY 463
           S   +P+  +P+  +   PAA  Y++P +P Y  P +P+Y+RP    AA N   P  P Y
Sbjct: 268 SAPAAPSYKAPAAPSYSTPAAQSYSAPAAPNYSAPAAPSYSRP----AAPNYAPPPVPTY 323

Query: 464 S-PFSPNYAAASSPAYQPPS 520
           S P +P+Y+A ++ +Y  P+
Sbjct: 324 SAPAAPSYSAPAAQSYSAPA 343

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
 Frame = +2

Query: 113 RMSPASPGYAAMSPRFGGGLGGGPAGGAGAY-APASPAYMATSPGMGYSPSTPALAVSSP 289
           R S   P  A  +P          A  A +Y APA+P+Y   +     +P+ P+ +   P
Sbjct: 48  RSSSGIPAQAYAAPVIYNSQSSYSAPAAPSYSAPATPSYSGPAAPNYSAPAAPSYSAPKP 107

Query: 290 GYSPGYSPTS--PSVGARGGPAA-GYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSP 457
            YS   +PT   P+V +   PA   Y++P +P Y  P + +Y+ P    AA N  +P++P
Sbjct: 108 SYSSSAAPTYSLPAVPSYSAPATPSYSAPAAPSYSTPAAQSYSAP----AAPNYSAPAAP 163

Query: 458 AYS-PFSPNYAAASSPAYQPPS 520
           +YS P +PNYA    P Y  P+
Sbjct: 164 SYSRPAAPNYAPPPVPTYSAPA 185

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 25/195 (12%)
 Frame = +2

Query: 11  TASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA-MSPRFGGG-LGGGP 184
           +A  +P  S+  A   +TP   +     A  ++   +PA+P Y+   +P +    +    
Sbjct: 126 SAPATPSYSAPAAPSYSTPAAQSYSAPAAPNYS---APAAPSYSRPAAPNYAPPPVPTYS 182

Query: 185 AGGAGAY-APASPAYMATSPGMGYSPSTP---ALAV------SSPGYS-----------P 301
           A  A +Y APA+P+Y A +     +P++P   A A       +SP YS            
Sbjct: 183 APAAPSYSAPAAPSYSAPAAQSYSAPASPSYSAPAAPSYSAPASPNYSAPAAQSYSEPKS 242

Query: 302 GYSPTSPSVGARGGPAAGYASPQSPGY-VPTSPAYARPGTVVAAANVYSPSSPAYS-PFS 475
            YS T+PS  +   PA+ Y++P +P Y  P +P+Y  P    AA +  +P++ +YS P +
Sbjct: 243 SYSSTAPS--SYSAPASSYSAPAAPSYSAPAAPSYKAP----AAPSYSTPAAQSYSAPAA 296

Query: 476 PNYAAASSPAYQPPS 520
           PNY+A ++P+Y  P+
Sbjct: 297 PNYSAPAAPSYSRPA 311

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 7/172 (4%)
 Frame = +2

Query: 26  PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGG--LGGGPAGGAG 199
           P  S+  A   + P   +     A  ++   +PASP Y+A + +              A 
Sbjct: 321 PTYSAPAAPSYSAPAAQSYSAPAAPSYS---APASPNYSAPAAQSYSTPTAQSYSTPTAQ 377

Query: 200 AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPG 379
           +Y+    +Y +T+P    +P++   A ++P YS   +P +PS  A   P     +PQS  
Sbjct: 378 SYSAPKSSYSSTAPSSYSAPASSYSAPAAPSYS---APAAPSYKAPAAPTYSAPAPQSYS 434

Query: 380 YVPTSPAYARPG----TVVAAANVYSPSSPAYS-PFSPNYAAASSPAYQPPS 520
             P +  Y+ P     +  AA +  +P++P+YS P +P+Y+A +  +Y  P+
Sbjct: 435 -APAAQTYSTPAAPSNSAPAAPSYSAPAAPSYSAPAAPSYSAPAGQSYSAPA 485

[231][TOP]
>UniRef100_UPI000051A44B PREDICTED: similar to K06A9.1b n=1 Tax=Apis mellifera
            RepID=UPI000051A44B
          Length = 2422

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 61/177 (34%), Positives = 75/177 (42%), Gaps = 13/177 (7%)
 Frame = +2

Query: 23   SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSP------ASPGYAAMSPRFGGGLGGGP 184
            SP       A  + PG + P   P G   P   P      + PGY A  P  G G    P
Sbjct: 1988 SPTSGPGYVAPTSGPGYVAPTSGP-GYVAPTSGPGYVAPTSGPGYVA--PTSGPGYVA-P 2043

Query: 185  AGGAGAYAPAS-PAYMATSPGMGYSPSTPALAVSSPGYSPGY-SPTSPS--VGARGGPAA 352
              G G  AP S P Y+A + G GY  ST      +P   PGY +PTS    V +  GP  
Sbjct: 2044 TSGPGYVAPTSGPGYVAPTSGPGYVASTSGPGYVAPTSGPGYVAPTSGPGYVASTSGP-- 2101

Query: 353  GYASPQS-PGYVPTSPAYARPGTVVAAANVYSPSSPAY--SPFSPNYAAASSPAYQP 514
            GY +P S PGYV ++       +      V   S P Y  S   P Y A++S A QP
Sbjct: 2102 GYVAPTSGPGYVASTSGPGYVASTSGPGYVAPTSGPGYVASTSGPGYVASTSSAIQP 2158

[232][TOP]
>UniRef100_A7SGI0 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis
           RepID=A7SGI0_NEMVE
          Length = 385

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 61/167 (36%), Positives = 67/167 (40%), Gaps = 10/167 (5%)
 Frame = +2

Query: 56  RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY----APASPA 223
           R+  GR    RSP GRF    SP  P Y+  SPR   G    P    G +    +P  P 
Sbjct: 183 RSPRGRFYSPRSPRGRFYSPRSPRGPFYSPRSPR---GRFYSPHSPLGPFYSPRSPRGPF 239

Query: 224 YMATSP-GMGYSPSTPALAVSSP--GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
           Y   SP G  YSP +P     SP     P YSP SP      GP     SP+ P Y P S
Sbjct: 240 YSPHSPRGRFYSPHSPRGPFYSPRSPRGPFYSPRSPR-----GPFYSPRSPRGPLYSPLS 294

Query: 395 PAYARPGTVVAAANVYSPSS---PAYSPFSPNYAAASSPAYQPPSRR 526
           P              YSP S   P YSP SP       P Y P S R
Sbjct: 295 PRGPFYSPRSPRGPFYSPRSPRGPLYSPLSPR-----GPLYSPRSPR 336

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 60/169 (35%), Positives = 69/169 (40%), Gaps = 12/169 (7%)
 Frame = +2

Query: 56  RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGA-GAYAPASPAYMA 232
           R+  G     RSP GRF    SP  P Y+  SPR        P G     ++P  P Y  
Sbjct: 203 RSPRGPFYSPRSPRGRFYSPHSPLGPFYSPRSPRGPFYSPHSPRGRFYSPHSPRGPFYSP 262

Query: 233 TSP-GMGYSPSTPALAVSSPGYSPG--YSPTSP-----SVGARGGPAAGYASPQSPGYVP 388
            SP G  YSP +P     SP    G  YSP SP     S  +  GP     SP+ P Y P
Sbjct: 263 RSPRGPFYSPRSPRGPFYSPRSPRGPLYSPLSPRGPFYSPRSPRGPFYSPRSPRGPLYSP 322

Query: 389 TSPAYARPGTVVAAANVYSPSSPA---YSPFSPNYAAASSPAYQPPSRR 526
            SP            ++YSP SP    YSP SP       P Y P S R
Sbjct: 323 LSPRGPLYSPRSPRGSLYSPQSPRGPFYSPHSPR-----RPIYSPHSPR 366

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 62/172 (36%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
 Frame = +2

Query: 56  RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY----APASPA 223
           R+  G     RSP GRF    SP  P Y+  SPR   G    P    G +    +P  P 
Sbjct: 53  RSPRGPFYSPRSPRGRFYSPRSPRGPFYSPHSPR---GPFYSPHSPRGPFYSPRSPRGPF 109

Query: 224 YMATSP-GMGYSPSTPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
           Y   SP G  YSP +P   + SP    G  YSP SP      GP     SP+ P Y P S
Sbjct: 110 YSPLSPRGPFYSPRSPRGPLYSPRSPRGALYSPRSPR-----GPFCSPRSPRGPFYSPRS 164

Query: 395 PAYARPGTVVAAANVYSPSSPA---YSPFSPN---YAAAS--SPAYQPPSRR 526
           P              YSP SP    YSP SP    Y+  S   P Y P S R
Sbjct: 165 PRGPFYSPHSPRGRFYSPRSPRGRFYSPRSPRGRFYSPRSPRGPFYSPRSPR 216

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 60/172 (34%), Positives = 67/172 (38%), Gaps = 15/172 (8%)
 Frame = +2

Query: 56  RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY----APASPA 223
           R+  G      SP GRF    SP  P Y+  SPR   G    P    G +    +P  P 
Sbjct: 3   RSPRGPFYSPHSPRGRFYSPRSPRGPFYSPRSPR---GPFYSPHSPRGPFYSPRSPRGPF 59

Query: 224 YMATSP-GMGYSPSTPALAVSSP--GYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
           Y   SP G  YSP +P     SP     P YSP SP      GP     SP+ P Y P S
Sbjct: 60  YSPRSPRGRFYSPRSPRGPFYSPHSPRGPFYSPHSPR-----GPFYSPRSPRGPFYSPLS 114

Query: 395 PAYARPGTVVAAANVYSPSSP---AYSPFSPNYAAAS-----SPAYQPPSRR 526
           P             +YSP SP    YSP SP     S      P Y P S R
Sbjct: 115 PRGPFYSPRSPRGPLYSPRSPRGALYSPRSPRGPFCSPRSPRGPFYSPRSPR 166

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 57/165 (34%), Positives = 64/165 (38%), Gaps = 10/165 (6%)
 Frame = +2

Query: 56  RATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAY----APASPA 223
           R+  G      SP GRF    SP  P Y+  SPR   G    P    G +    +P  P 
Sbjct: 233 RSPRGPFYSPHSPRGRFYSPHSPRGPFYSPRSPR---GPFYSPRSPRGPFYSPRSPRGPL 289

Query: 224 YMATSP-GMGYSPSTPALAVSSPGYSPG--YSPTSPSVGARGGPAAGYASPQSPGYVPTS 394
           Y   SP G  YSP +P     SP    G  YSP SP      GP     SP+   Y P S
Sbjct: 290 YSPLSPRGPFYSPRSPRGPFYSPRSPRGPLYSPLSPR-----GPLYSPRSPRGSLYSPQS 344

Query: 395 PAYARPGTVVAAANVYSPSSPA---YSPFSPNYAAASSPAYQPPS 520
           P             +YSP SP    YSP SP       P Y P S
Sbjct: 345 PRGPFYSPHSPRRPIYSPHSPRRPFYSPRSP-----LGPFYSPRS 384

[233][TOP]
>UniRef100_UPI00016DFC5D UPI00016DFC5D related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016DFC5D
          Length = 608

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 59/158 (37%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
 Frame = +2

Query: 53  GRATPGRMTPGR---SPAGRFTPRMSPA---------SPGYAAMSPRFGGGLGGGPAGGA 196
           G  +PG  +PG    SP G   P  SP          SPG  A SP  GG   GGP+ G 
Sbjct: 2   GGPSPGGPSPGGPSWSPGG---PAQSPGGLGRSPGGPSPGGQARSP--GGPSPGGPSPGG 56

Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQ 370
            A +P  PA   +  G+G SP  PA +    G SPG    SP    R  GGP+ G  SP 
Sbjct: 57  PARSPGGPA--RSPGGLGRSPGGPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPG 114

Query: 371 SP--GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
            P  G    SP    PG    +    SP  PA SP  P
Sbjct: 115 GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGP 152

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 67/182 (36%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
 Frame = +2

Query: 41  ADAAGRATPGRMTPG---RSPAGRFTPRMSPA----SPGYAAMSPRFGGGLG---GGPA- 187
           A + G  +PG  +PG   RSP G   P  SP     SPG  A SP   GGLG   GGPA 
Sbjct: 41  ARSPGGPSPGGPSPGGPARSPGG---PARSPGGLGRSPGGPAQSP---GGLGRSPGGPAQ 94

Query: 188 --GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
             GG G  +P  P+    SPG    PS+   A S  G SPG    SP   + GGPA    
Sbjct: 95  SPGGLGR-SPGGPSPGGPSPG---GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPG 150

Query: 362 SP-QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP---------FSPNYAAASSPAYQ 511
            P +SPG   +      PG         SP  PA SP          SP   ++  PA  
Sbjct: 151 GPARSPGGPSSGGLGRSPGGPSPGGPARSPGGPARSPGGPSSGGPARSPGGPSSGGPARS 210

Query: 512 PP 517
           PP
Sbjct: 211 PP 212

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 50/137 (36%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
 Frame = +2

Query: 53  GRATPGRMTPGRSPAGRFTPRMSPA--SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
           G  +PG  +PG   +G   P  SP   SPG  A SP       GGP+ G  A +P  PA 
Sbjct: 104 GGPSPGGPSPGGPSSGG--PARSPGGPSPGGPARSP-------GGPSPGGPARSPGGPAR 154

Query: 227 MATSP---GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
               P   G+G SP  P+     P  SPG    SP   + GGPA     P S G   + P
Sbjct: 155 SPGGPSSGGLGRSPGGPS--PGGPARSPGGPARSPGGPSSGGPARSPGGPSSGGPARSPP 212

Query: 398 AYARPGTVVAAANVYSP 448
             A P  V+A A  +SP
Sbjct: 213 GGAGPSGVLAPAACWSP 229

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 59/150 (39%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
 Frame = +2

Query: 62  TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA------SPA 223
           +PG +  GRSP G  +P     SPG     P  GG   GGPA   G  A +      SP 
Sbjct: 24  SPGGL--GRSPGGP-SPGGQARSPG----GPSPGGPSPGGPARSPGGPARSPGGLGRSPG 76

Query: 224 YMATSP-GMGYSPSTPALAVSSPGYSP-GYSPTSPSVG--ARGGPAAGYASPQSPGYVPT 391
             A SP G+G SP  PA +    G SP G SP  PS G  + GGPA     P SPG    
Sbjct: 77  GPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPGGPSSGGPARSPGGP-SPGGPAR 135

Query: 392 SPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
           SP    PG         SP  PA SP  P+
Sbjct: 136 SPGGPSPG-----GPARSPGGPARSPGGPS 160

[234][TOP]
>UniRef100_UPI00016DFC5C UPI00016DFC5C related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016DFC5C
          Length = 579

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 59/158 (37%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
 Frame = +2

Query: 53  GRATPGRMTPGR---SPAGRFTPRMSPA---------SPGYAAMSPRFGGGLGGGPAGGA 196
           G  +PG  +PG    SP G   P  SP          SPG  A SP  GG   GGP+ G 
Sbjct: 43  GGPSPGGPSPGGPSWSPGG---PAQSPGGLGRSPGGPSPGGQARSP--GGPSPGGPSPGG 97

Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQ 370
            A +P  PA   +  G+G SP  PA +    G SPG    SP    R  GGP+ G  SP 
Sbjct: 98  PARSPGGPA--RSPGGLGRSPGGPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPG 155

Query: 371 SP--GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
            P  G    SP    PG    +    SP  PA SP  P
Sbjct: 156 GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGP 193

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 67/182 (36%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
 Frame = +2

Query: 41  ADAAGRATPGRMTPG---RSPAGRFTPRMSPA----SPGYAAMSPRFGGGLG---GGPA- 187
           A + G  +PG  +PG   RSP G   P  SP     SPG  A SP   GGLG   GGPA 
Sbjct: 82  ARSPGGPSPGGPSPGGPARSPGG---PARSPGGLGRSPGGPAQSP---GGLGRSPGGPAQ 135

Query: 188 --GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
             GG G  +P  P+    SPG    PS+   A S  G SPG    SP   + GGPA    
Sbjct: 136 SPGGLGR-SPGGPSPGGPSPG---GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPG 191

Query: 362 SP-QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP---------FSPNYAAASSPAYQ 511
            P +SPG   +      PG         SP  PA SP          SP   ++  PA  
Sbjct: 192 GPARSPGGPSSGGLGRSPGGPSPGGPARSPGGPARSPGGPSSGGPARSPGGPSSGGPARS 251

Query: 512 PP 517
           PP
Sbjct: 252 PP 253

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 59/150 (39%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
 Frame = +2

Query: 62  TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA------SPA 223
           +PG +  GRSP G  +P     SPG     P  GG   GGPA   G  A +      SP 
Sbjct: 65  SPGGL--GRSPGGP-SPGGQARSPG----GPSPGGPSPGGPARSPGGPARSPGGLGRSPG 117

Query: 224 YMATSP-GMGYSPSTPALAVSSPGYSP-GYSPTSPSVG--ARGGPAAGYASPQSPGYVPT 391
             A SP G+G SP  PA +    G SP G SP  PS G  + GGPA     P SPG    
Sbjct: 118 GPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPGGPSSGGPARSPGGP-SPGGPAR 176

Query: 392 SPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
           SP    PG         SP  PA SP  P+
Sbjct: 177 SPGGPSPG-----GPARSPGGPARSPGGPS 201

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 55/141 (39%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
 Frame = +2

Query: 65  PGRMTPG---RSPAGRFTPRMSPASPGYAAMS--PRFGGGLGGGPAGGA-GAYAPASPAY 226
           PG  +PG   RSP G   P  SP SPG  +     R  GGLG  P G + G  +P  P++
Sbjct: 1   PGDPSPGGPARSPGG---PARSPGSPGGPSPGGQARSPGGLGRSPGGPSPGGPSPGGPSW 57

Query: 227 MATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA 406
              SPG G + S   L  S  G SPG    SP     GGP+ G  SP  P   P  PA +
Sbjct: 58  ---SPG-GPAQSPGGLGRSPGGPSPGGQARSP-----GGPSPGGPSPGGPARSPGGPARS 108

Query: 407 RPGTVVAAANVYSPSSPAYSP 469
            PG +       SP  PA SP
Sbjct: 109 -PGGLGR-----SPGGPAQSP 123

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 46/126 (36%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
 Frame = +2

Query: 53  GRATPGRMTPGRSPAGRFTPRMSPA--SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
           G  +PG  +PG   +G   P  SP   SPG  A SP       GGP+ G  A +P  PA 
Sbjct: 145 GGPSPGGPSPGGPSSGG--PARSPGGPSPGGPARSP-------GGPSPGGPARSPGGPAR 195

Query: 227 MATSP---GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
               P   G+G SP  P+     P  SPG    SP   + GGPA     P S G     P
Sbjct: 196 SPGGPSSGGLGRSPGGPS--PGGPARSPGGPARSPGGPSSGGPARSPGGPSSGG-----P 248

Query: 398 AYARPG 415
           A + PG
Sbjct: 249 ARSPPG 254

[235][TOP]
>UniRef100_UPI00016DFC5B UPI00016DFC5B related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016DFC5B
          Length = 609

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 59/158 (37%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
 Frame = +2

Query: 53  GRATPGRMTPGR---SPAGRFTPRMSPA---------SPGYAAMSPRFGGGLGGGPAGGA 196
           G  +PG  +PG    SP G   P  SP          SPG  A SP  GG   GGP+ G 
Sbjct: 56  GGPSPGGPSPGGPSWSPGG---PAQSPGGLGRSPGGPSPGGQARSP--GGPSPGGPSPGG 110

Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGAR--GGPAAGYASPQ 370
            A +P  PA   +  G+G SP  PA +    G SPG    SP    R  GGP+ G  SP 
Sbjct: 111 PARSPGGPA--RSPGGLGRSPGGPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPG 168

Query: 371 SP--GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSP 478
            P  G    SP    PG    +    SP  PA SP  P
Sbjct: 169 GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPGGP 206

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 67/182 (36%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
 Frame = +2

Query: 41  ADAAGRATPGRMTPG---RSPAGRFTPRMSPA----SPGYAAMSPRFGGGLG---GGPA- 187
           A + G  +PG  +PG   RSP G   P  SP     SPG  A SP   GGLG   GGPA 
Sbjct: 95  ARSPGGPSPGGPSPGGPARSPGG---PARSPGGLGRSPGGPAQSP---GGLGRSPGGPAQ 148

Query: 188 --GGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYA 361
             GG G  +P  P+    SPG    PS+   A S  G SPG    SP   + GGPA    
Sbjct: 149 SPGGLGR-SPGGPSPGGPSPG---GPSSGGPARSPGGPSPGGPARSPGGPSPGGPARSPG 204

Query: 362 SP-QSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSP---------FSPNYAAASSPAYQ 511
            P +SPG   +      PG         SP  PA SP          SP   ++  PA  
Sbjct: 205 GPARSPGGPSSGGLGRSPGGPSPGGPARSPGGPARSPGGPSSGGPARSPGGPSSGGPARS 264

Query: 512 PP 517
           PP
Sbjct: 265 PP 266

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 56/149 (37%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
 Frame = +2

Query: 65  PGRMTPG---RSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMAT 235
           PG  +PG   RSP G   P  SP  P   A SP   GGL   P G +      SP  +  
Sbjct: 1   PGDPSPGGPARSPGG---PARSPGGP---ARSPS-PGGLAQSPGGPSPGGQARSPGGLGR 53

Query: 236 SPGM----GYSPSTPALAVSSPGYSPG---YSPTSPSVGAR----GGPAAGYASPQSPGY 382
           SPG     G SP  P+ +   P  SPG    SP  PS G +    GGP+ G  SP  P  
Sbjct: 54  SPGGPSPGGPSPGGPSWSPGGPAQSPGGLGRSPGGPSPGGQARSPGGPSPGGPSPGGPAR 113

Query: 383 VPTSPAYARPGTVVAAANVYSPSSPAYSP 469
            P  PA + PG +       SP  PA SP
Sbjct: 114 SPGGPARS-PGGLGR-----SPGGPAQSP 136

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 59/150 (39%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
 Frame = +2

Query: 62  TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA------SPA 223
           +PG +  GRSP G  +P     SPG     P  GG   GGPA   G  A +      SP 
Sbjct: 78  SPGGL--GRSPGGP-SPGGQARSPG----GPSPGGPSPGGPARSPGGPARSPGGLGRSPG 130

Query: 224 YMATSP-GMGYSPSTPALAVSSPGYSP-GYSPTSPSVG--ARGGPAAGYASPQSPGYVPT 391
             A SP G+G SP  PA +    G SP G SP  PS G  + GGPA     P SPG    
Sbjct: 131 GPAQSPGGLGRSPGGPAQSPGGLGRSPGGPSPGGPSPGGPSSGGPARSPGGP-SPGGPAR 189

Query: 392 SPAYARPGTVVAAANVYSPSSPAYSPFSPN 481
           SP    PG         SP  PA SP  P+
Sbjct: 190 SPGGPSPG-----GPARSPGGPARSPGGPS 214

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 46/126 (36%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
 Frame = +2

Query: 53  GRATPGRMTPGRSPAGRFTPRMSPA--SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAY 226
           G  +PG  +PG   +G   P  SP   SPG  A SP       GGP+ G  A +P  PA 
Sbjct: 158 GGPSPGGPSPGGPSSGG--PARSPGGPSPGGPARSP-------GGPSPGGPARSPGGPAR 208

Query: 227 MATSP---GMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
               P   G+G SP  P+     P  SPG    SP   + GGPA     P S G     P
Sbjct: 209 SPGGPSSGGLGRSPGGPS--PGGPARSPGGPARSPGGPSSGGPARSPGGPSSGG-----P 261

Query: 398 AYARPG 415
           A + PG
Sbjct: 262 ARSPPG 267

[236][TOP]
>UniRef100_A5E8N9 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. BTAi1
           RepID=A5E8N9_BRASB
          Length = 727

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 65/189 (34%), Positives = 71/189 (37%), Gaps = 28/189 (14%)
 Frame = +2

Query: 38  SADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG-AGA---- 202
           S  AAG A P   TP RS A    P  +P  PG     P    G G  P G   GA    
Sbjct: 217 SPPAAGNAPPPAHTPPRSAAPSPQPTPAPTPPGGPGQRPPIQPGAGAPPPGAPQGAPPPR 276

Query: 203 YAPASPA-YMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGG------PAAGYA 361
            AP  PA  +A  PG   SP+TP  A + P   P   P +PS G R G      PAAG  
Sbjct: 277 GAPTPPAGTVAPGPGTPPSPATPPAAQTPP---PNAQPGTPSPGPRPGTPPTPPPAAGPG 333

Query: 362 SPQSPGYVPTSPAYARPGTVVAAAN----------------VYSPSSPAYSPFSPNYAAA 493
               PG     P  A PG    AA                 V     PA +   P   AA
Sbjct: 334 PAAGPGAAGPGPGTAAPGPGGPAATPAPGPGSGPGAGAQGAVPPAGPPAMTNRPPPQVAA 393

Query: 494 SSPAYQPPS 520
             PA  PPS
Sbjct: 394 PIPAPPPPS 402

[237][TOP]
>UniRef100_C6F0B0 RNA polymerase II (Fragment) n=1 Tax=Plasmodium falciparum
           RepID=C6F0B0_PLAFA
          Length = 188

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 47/123 (38%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
 Frame = +2

Query: 128 SPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPG- 304
           SP Y+  SP+               Y+P SP Y  TSP   YSP++P  + +SP YSP  
Sbjct: 37  SPVYSVTSPK---------------YSPTSPKYSPTSPK--YSPTSPKYSPTSPKYSPTS 79

Query: 305 --YSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV---AAANVYSPSSPAYSP 469
             YSPTSP       P     S  SP + PTSPAY+    V       N + P SPAY  
Sbjct: 80  PKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAHQPMSPAYIL 139

Query: 470 FSP 478
            SP
Sbjct: 140 QSP 142

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 50/126 (39%), Positives = 62/126 (49%), Gaps = 24/126 (19%)
 Frame = +2

Query: 203 YAPASPAYMA-------TSP---------GMGYSPSTPALAVSSPGYSPG---YSPTSPS 325
           Y+P SP Y A       TSP            Y+  +P  +V+SP YSP    YSPTSP 
Sbjct: 1   YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60

Query: 326 VGARGGPAAGYASPQSPGYVPTSPAYARPGTV---VAAANV--YSPSSPAYSPFSPNYAA 490
                 P +   SP SP Y PTSP Y+    V   +A+ N   YS +SP +SP SP Y +
Sbjct: 61  YS----PTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAY-S 115

Query: 491 ASSPAY 508
            SSP Y
Sbjct: 116 ISSPVY 121

[238][TOP]
>UniRef100_UPI00017E10CB cuticular protein n=1 Tax=Acyrthosiphon pisum RepID=UPI00017E10CB
          Length = 310

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 53/153 (34%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMS----PASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSPG 244
           TP  S A  + P       PA+P Y + +P +       PA  A + APA PA  A    
Sbjct: 150 TPSYSSAPAYKPAYKAPAYPAAPAYPS-APAYPAA-PAYPAAPAYSAAPAYPAAPAYPAA 207

Query: 245 MGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYARPGTVV 424
             Y P+  A A S+P Y P YS  + S  A   P    A P +P Y P +PAY       
Sbjct: 208 PAYKPAYSAPAYSAPAYKPAYSAPAYSAPAYSAP----AYPAAPAY-PAAPAYPTESYPA 262

Query: 425 AAANVYSPSSPAYSPFSPNYA---AASSPAYQP 514
           A A  YS  +PAY   +P  A   +  +PAY+P
Sbjct: 263 APAYGYSTPAPAYGYSTPAPAYGYSTPAPAYKP 295

[239][TOP]
>UniRef100_C5Y8R4 Putative uncharacterized protein Sb06g017200 n=1 Tax=Sorghum
           bicolor RepID=C5Y8R4_SORBI
          Length = 367

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 53/162 (32%), Positives = 71/162 (43%), Gaps = 9/162 (5%)
 Frame = +2

Query: 62  TPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASPAYMATSP 241
           TPG +      +G  +P  SPA+P  A  S +           G+  Y+PASP Y     
Sbjct: 74  TPGSLDCSSQRSG--SPDYSPATPDPATPSSQ---------RSGSPVYSPASPEY----- 117

Query: 242 GMGYSPSTPALAVSS-----PGYSPG---YSPTSPSVGARGGPAAGYASPQ-SPGYVPTS 394
                  TP L  SS     P YSP    Y+P +PS    G P    ASP+ +P   P+S
Sbjct: 118 -------TPLLKPSSRRFGSPDYSPATPEYTPLTPSSQRSGSPVYSPASPEYTPLLTPSS 170

Query: 395 PAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
             +  P         YSP+SP Y+P +P+   + SP Y P S
Sbjct: 171 RRFGSPD--------YSPASPEYTPLTPSSQRSGSPVYSPGS 204

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 61/204 (29%), Positives = 86/204 (42%), Gaps = 33/204 (16%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPGRSPAG-RFTPRMSPAS-----PGYAAMSPRFGGG 169
           AT  ++P+  S+  +G       +P  SPA   +TP ++P+S     P Y+  SP +   
Sbjct: 136 ATPEYTPLTPSSQRSG-------SPVYSPASPEYTPLLTPSSRRFGSPDYSPASPEYTPL 188

Query: 170 LGGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARG 340
                  G+  Y+P SP          Y+P TP     SP Y+P    Y+P SPS  +  
Sbjct: 189 TPSSQRSGSPVYSPGSPE---------YTPLTPPKRSGSPAYTPAAANYTPRSPSSSSLS 239

Query: 341 -----------GPAAGYAS-PQSPGYVPTS-------PAYARPGTVVAAANVYSP--SSP 457
                       P+ G +S   SP Y P S       P Y    T   +A  YSP  +SP
Sbjct: 240 DFFHDFDRHCTSPSTGCSSRAVSPEYTPASASGCCSPPDYFFCYTSPPSAG-YSPRDASP 298

Query: 458 AYSPFSPNYA---AASSPAYQPPS 520
            Y+P  P  +    A+SP Y P S
Sbjct: 299 EYTPSIPLISLPRRAASPDYTPSS 322

[240][TOP]
>UniRef100_Q7XRB2 OSJNBa0006B20.10 protein n=3 Tax=Oryza sativa RepID=Q7XRB2_ORYSJ
          Length = 335

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 54/164 (32%), Positives = 70/164 (42%), Gaps = 4/164 (2%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S A    RA     TP   P    +P  SP SP   A SP +       P+  A +
Sbjct: 89  SPDYSPASPPRRAASPDYTPESPPRRAASPDYSPESPPRRAASPDY---TPASPSRRAAS 145

Query: 203 --YAPASPAYMATSPGMGYSPSTPA--LAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQ 370
             Y P SP   A SP   Y+P++P+   A SSP Y+P   P   +      P+       
Sbjct: 146 PDYTPESPPRRAASPD--YTPASPSRRAAASSPDYTPESPPRRRAASPDYSPSTPPRRAA 203

Query: 371 SPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
           SP Y P++P         AA+  YSPS+P     SP+Y   S P
Sbjct: 204 SPDYSPSTPPRR------AASPDYSPSTPPRRAASPDYTPMSPP 241

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 55/155 (35%), Positives = 69/155 (44%), Gaps = 10/155 (6%)
 Frame = +2

Query: 92  PAGRFTPRMSP----ASPGYAAMSPRFGGGLGGGPAGGAGA-YAPASPAYMATSPGMGYS 256
           P+  +TP   P    ASP Y   SP         P   A   Y+PASP   A SP   Y+
Sbjct: 59  PSPDYTPASPPHRRAASPDYTPESP---------PRRAASPDYSPASPPRRAASPD--YT 107

Query: 257 PSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSP---AYARPGTVVA 427
           P +P    +SP YSP  SP   +      PA+      SP Y P SP   A +   T  +
Sbjct: 108 PESPPRRAASPDYSPE-SPPRRAASPDYTPASPSRRAASPDYTPESPPRRAASPDYTPAS 166

Query: 428 AANVYSPSSPAYSPFSPNYAAASSPAYQP--PSRR 526
            +   + SSP Y+P SP    A+SP Y P  P RR
Sbjct: 167 PSRRAAASSPDYTPESPPRRRAASPDYSPSTPPRR 201

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 55/166 (33%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGY--AAMSPRFGGGLGGGPAGGA 196
           SP  + A  + RA     TP   P    +P  +PASP    AA SP +           +
Sbjct: 131 SPDYTPASPSRRAASPDYTPESPPRRAASPDYTPASPSRRAAASSPDYTPESPPRRRAAS 190

Query: 197 GAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
             Y+P++P   A SP   YSPSTP    +SP YSP   P       R   +  Y +P SP
Sbjct: 191 PDYSPSTPPRRAASPD--YSPSTPPRRAASPDYSPSTPP-------RRAASPDY-TPMSP 240

Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
                SP Y +      AA      SP Y+P +P    A+SP Y P
Sbjct: 241 PRRAASPDYTQMTPPRRAA------SPDYTPSTPPPPRAASPDYTP 280

[241][TOP]
>UniRef100_Q6DCF9 Anxa7 protein n=1 Tax=Xenopus laevis RepID=Q6DCF9_XENLA
          Length = 520

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 48/154 (31%), Positives = 58/154 (37%), Gaps = 13/154 (8%)
 Frame = +2

Query: 92  PAGRFTPR--MSPASPGYAAMSPRFGGGLGGGPAGG---AGAYAPASPAYMATSPGMGYS 256
           P G+F P     P + G  A  P  GGG    P GG   AG Y PA   Y     GM   
Sbjct: 32  PGGQFPPAGGQFPPAAGGGAFPPASGGGFPPAPGGGYPQAGGY-PAPGGYPG---GMPSY 87

Query: 257 PSTPALAVSSPGYSPGYSPTSPSVGARG-------GPAAGYASPQSPGY-VPTSPAYARP 412
           P  P     + G   G  P +P+ G  G        PA GY +P + G+ VP +  Y  P
Sbjct: 88  PGAPGFGAPAGGQGYGAPPGAPAYGVPGYGGPGFNAPAGGYGAPNAGGFGVPPAGGYGAP 147

Query: 413 GTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           G          PSS +Y    P       P   P
Sbjct: 148 GGAPGYGGFSQPSSQSYGAGGPGQMPGQMPGQMP 181

[242][TOP]
>UniRef100_C8XIP8 Membrane-flanked domain protein n=1 Tax=Nakamurella multipartita
           DSM 44233 RepID=C8XIP8_9ACTO
          Length = 479

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 55/186 (29%), Positives = 71/186 (38%), Gaps = 14/186 (7%)
 Frame = +2

Query: 5   NATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGP 184
           N T  + P   +  A G+  P        PA  + P    A PGY    P+ G   G  P
Sbjct: 205 NQTGGYGPATGAQPAYGQGYP--------PAQGYPPAAGYAQPGYGPAHPQTGPTQGYPP 256

Query: 185 AGGAGAYAPASP--AYMA---TSPGMGYSPSTPALAVSSP-GY-SPGYSPT---SPSVGA 334
            G    Y P  P  +Y A    +   GY PS  A     P GY  PGY+P     P    
Sbjct: 257 PGQPQGYPPPGPTQSYPAGHQPTQSPGYPPSGYATGGYPPNGYQQPGYAPNGYQQPGYQQ 316

Query: 335 RGGPAAGYASPQSPGYV----PTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSP 502
            G  + GY  P +P       P  P Y++ G   A       S PA    +P +  A+ P
Sbjct: 317 PGHASGGYPPPAAPANYSQPGPPQPGYSQSGYSQAGYAQPGSSQPAEGQAAPPFTPAAGP 376

Query: 503 AYQPPS 520
             QPP+
Sbjct: 377 GEQPPA 382

[243][TOP]
>UniRef100_UPI0001761210 PREDICTED: similar to C25F9.2 n=1 Tax=Danio rerio
           RepID=UPI0001761210
          Length = 1744

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 3/169 (1%)
 Frame = +2

Query: 8   ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
           ++A   P+ +   A  RA   + TP   P     P ++PA+P   A +P           
Sbjct: 9   SSAVLYPVTAPPIAPARAAAPKTTPTAMPEPAAAPMLAPATPASTATAPPAAAVAPAAAP 68

Query: 188 GGAGAYAPASPAYMA-TSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYAS 364
             A A  PAS A  A T+P      +TPA   ++   +P  +P S +  A   P A  A+
Sbjct: 69  AVAPAATPASTAAAAPTAPA-----ATPASTAAAAPTAPAATPASTAAAA---PTAPAAT 120

Query: 365 PQSPGYVPTSPAYARPGTVVAA--ANVYSPSSPAYSPFSPNYAAASSPA 505
           P S    PT+PA A P +  AA  A   +P+S A +P +P  A A+ PA
Sbjct: 121 PASTAAAPTAPA-ATPASTAAAPTAPAATPASTAAAPTAPAVAPAAMPA 168

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 8/170 (4%)
 Frame = +2

Query: 35  SSADAAGRATPGRMT-PGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
           SS ++A  A    +T P  +PA    P+ +P +    A +P                 AP
Sbjct: 3   SSTESASSAVLYPVTAPPIAPARAAAPKTTPTAMPEPAAAPML---------------AP 47

Query: 212 ASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAA-----GYASPQSP 376
           A+PA  AT+P     P+      ++P  +P  +P S +  A   PAA       A+P +P
Sbjct: 48  ATPASTATAP-----PAAAVAPAAAPAVAPAATPASTAAAAPTAPAATPASTAAAAPTAP 102

Query: 377 GYVPTSPAYARPGTVVA--AANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
              P S A A P    A  A+   +P++PA +P S   AA ++PA  P S
Sbjct: 103 AATPASTAAAAPTAPAATPASTAAAPTAPAATPAS-TAAAPTAPAATPAS 151

[244][TOP]
>UniRef100_Q01K81 H0525C06.3 protein n=2 Tax=Oryza sativa RepID=Q01K81_ORYSA
          Length = 350

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 15/188 (7%)
 Frame = +2

Query: 2   INATASFSPIMSSADAAGRAT----PGRMTPGRSPAGRF--TPRMSPASPGYAAMSPRFG 163
           +++++S++   +SAD A   T    P  M P   P  R   +P  +P++P   A SP + 
Sbjct: 89  VSSSSSYASCSASADDAFYWTCFCGPMVMAPPPPPPPRTAASPEYTPSTPWRRAASPDYT 148

Query: 164 GGLGGGPAGGAGAYAPA---SPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGA 334
                  A     +AP+   SP+  A SP   YSPSTP    +SP YSP  +P   +   
Sbjct: 149 PSTPWRRAASPD-HAPSPPWSPSRRAASPD--YSPSTPPRRAASPDYSPS-TPPRRAASP 204

Query: 335 RGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYA------AAS 496
              P+  +    SP Y P++P ++ P    A++  YSPS+P     SPNY        A+
Sbjct: 205 DYTPSTPWRRAASPDYAPSTP-WSPPRR--ASSPDYSPSTPPRRAASPNYTPSTPPRRAA 261

Query: 497 SPAYQPPS 520
           SP Y P S
Sbjct: 262 SPDYSPSS 269

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 58/166 (34%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
 Frame = +2

Query: 77  TPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA--YAPASPAYMATSPGMG 250
           TP R  A   +P  +P++P   A SP         P+  A +  Y+P++P   A SP   
Sbjct: 137 TPWRRAA---SPDYTPSTPWRRAASPDHAPSPPWSPSRRAASPDYSPSTPPRRAASPD-- 191

Query: 251 YSPSTPALAVSSPGY----------SPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
           YSPSTP    +SP Y          SP Y+P++P    R   +  Y SP +P     SP 
Sbjct: 192 YSPSTPPRRAASPDYTPSTPWRRAASPDYAPSTPWSPPRRASSPDY-SPSTPPRRAASPN 250

Query: 401 YARPGTVV--AAANVYSPSSPAYSPFSPNYA------AASSPAYQP 514
           Y  P T    AA+  YSPSSP     SP Y        A+SP Y P
Sbjct: 251 YT-PSTPPRRAASPDYSPSSPPRRAASPEYTQLSPPRRAASPDYNP 295

 Score = 57.4 bits (137), Expect = 6e-07
 Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 2/165 (1%)
 Frame = +2

Query: 23  SPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGA 202
           SP  S +    RA     +P   P    +P  +P++P   A SP +       P   A +
Sbjct: 175 SPDYSPSTPPRRAASPDYSPSTPPRRAASPDYTPSTPWRRAASPDYAPSTPWSPPRRASS 234

Query: 203 --YAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
             Y+P++P   A SP   Y+PSTP    +SP Y    SP+SP   A            SP
Sbjct: 235 PDYSPSTPPRRAASPN--YTPSTPPRRAASPDY----SPSSPPRRA-----------ASP 277

Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQ 511
            Y   SP         AA+  Y+PS+P  SP   +  + +SP ++
Sbjct: 278 EYTQLSPPRR------AASPDYNPSTPPPSPVPSDAGSRTSPPWR 316

[245][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
            RepID=Q9BMP2_STYMT
          Length = 1678

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 65/200 (32%), Positives = 90/200 (45%), Gaps = 35/200 (17%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTP-----RMSPA-----SPGY-----AAMSP 154
            ++ I S    A    PGR   G   +  ++P     RMSP+     SPGY     A+ SP
Sbjct: 1467 YNAIQSPIYHATEGGPGRSPTGNQASPIYSPTTQNNRMSPSYYNSVSPGYYRTPGASSSP 1526

Query: 155  RFGGGLGGGPAG--------GAGAYAPAS----------PAYMATSPGMGYSPSTPALAV 280
             +   LG   +         G+G+Y+P +          P   ++SP   YSP+TPA   
Sbjct: 1527 VYSQTLGSHQSPSYSPTQNQGSGSYSPTNQSKIHIYQHQPLDYSSSPH--YSPTTPAY-- 1582

Query: 281  SSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAYA-RPGTVVAAANVYSPSSP 457
             +  YSP YSPTS  VG+       Y   QS  Y   S   +  PG   A++ +Y P+SP
Sbjct: 1583 -NQHYSPSYSPTSNVVGSGLNQTPRYQVNQSSRYAMDSAHQSGSPGN--ASSGLYVPTSP 1639

Query: 458  AYSP-FSPNYAAASSPAYQP 514
            AY+P  SP+Y   SS    P
Sbjct: 1640 AYNPTTSPSYNNMSSRQNNP 1659

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 67/191 (35%), Positives = 77/191 (40%), Gaps = 32/191 (16%)
 Frame = +2

Query: 44   DAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAA----MSPRFGGGLGGGP---AGGAGA 202
            D  G +T    TPG    G F+P     SPGYA     MSP  G    G P   A  +  
Sbjct: 1411 DYGGASTHSMWTPGNQ--GSFSPSPGVYSPGYAQSPGYMSP--GQQFMGSPNYRAVQSPI 1466

Query: 203  Y-APASPAYMATSPGMG-----------YSPSTPALAVSSPGY---SPGYSPTSPSVGAR 337
            Y A  SP Y AT  G G           YSP+T    +S   Y   SPGY  T    GA 
Sbjct: 1467 YNAIQSPIYHATEGGPGRSPTGNQASPIYSPTTQNNRMSPSYYNSVSPGYYRTP---GAS 1523

Query: 338  GGPAAGYA--SPQSPGYVPT----SPAYARPGTVVAAANVYSP----SSPAYSPFSPNYA 487
              P       S QSP Y PT    S +Y+           + P    SSP YSP +P Y 
Sbjct: 1524 SSPVYSQTLGSHQSPSYSPTQNQGSGSYSPTNQSKIHIYQHQPLDYSSSPHYSPTTPAYN 1583

Query: 488  AASSPAYQPPS 520
               SP+Y P S
Sbjct: 1584 QHYSPSYSPTS 1594

[246][TOP]
>UniRef100_UPI0000222BCC Hypothetical protein CBG04553 n=1 Tax=Caenorhabditis briggsae AF16
           RepID=UPI0000222BCC
          Length = 723

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 57/170 (33%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
 Frame = +2

Query: 35  SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR--------FGGGLGGGPAG 190
           SS    G  + G  + G +PA    P  +PA     A +P          GGG GGG +G
Sbjct: 444 SSGGGGGGGSSGGYSGGSAPAPASEPAPAPAPEQAPAPAPAPAPSGGYSSGGGGGGGSSG 503

Query: 191 G-AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY--- 358
           G +G  APA  +  A +P     P+ PA A SS GYS G S      G+ GG + GY   
Sbjct: 504 GYSGGSAPAPASEPAPAPAPEPEPA-PAPAPSSGGYSGGSSSGGGGGGSSGGSSGGYSGG 562

Query: 359 -ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
            A+P  P      PA A P    A +  YS         S  Y+  S+PA
Sbjct: 563 SAAPPPPPPPAPEPAPA-PAPAPAPSGGYSSEGGGGGGSSGGYSGGSAPA 611

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
 Frame = +2

Query: 35  SSADAAGRATPGRMTPGRSPAGRFTPRMSPA-----SPGYAAMSPRFGGGLGGGPAGGAG 199
           SS  ++G  + G   P   P     P  +PA     S GY++     GGG GG   G +G
Sbjct: 551 SSGGSSGGYSGGSAAPPPPPPPAPEPAPAPAPAPAPSGGYSSE----GGGGGGSSGGYSG 606

Query: 200 AYAPASPAYMATSPGMGYSPS-TPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
             APA  +  A +P     P+  PA A SS GYS G S      G+ GG + GY+   + 
Sbjct: 607 GSAPAPASEPAPAPAPEPEPAPAPASAPSSGGYSGGSSSGGGGGGSSGGSSGGYSGGSAA 666

Query: 377 GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
              P  P    P    A A   +P++P+   +S
Sbjct: 667 PPPPPPPPPPSPAPEPALAPEAAPAAPSGGGYS 699

[247][TOP]
>UniRef100_O62010 S19 chorion protein n=1 Tax=Ceratitis capitata RepID=O62010_CERCA
          Length = 326

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 12/161 (7%)
 Frame = +2

Query: 74  MTPGRSP-AGRFTPRMSPASPGYAAMSPRFGGGLGGG----------PAGGAGAYAPASP 220
           ++ G SP AG  T     A+P  +A S    GG GG           PA G  +    S 
Sbjct: 80  VSAGGSPSAGPVTSTSYSAAPASSAGSSAPSGGYGGSDEPILFVNEIPAAGYSS----SG 135

Query: 221 AYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSPGYVPTSPA 400
            Y A +P    S S PA + ++P  +P YS  +PS  A   PAA Y++P +   VP +P+
Sbjct: 136 GYSAPAPAPAASYSAPAPSYTAP--APSYSAPAPSYSA---PAATYSAPTATYSVP-APS 189

Query: 401 YARPG-TVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPS 520
           Y+ P  +  A A  YS  +P+YS  S +YAA +  +Y  P+
Sbjct: 190 YSAPAPSYSAPAPSYSAPAPSYSAPSSSYAAPAPASYSAPA 230

[248][TOP]
>UniRef100_A8WXW9 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae
            RepID=A8WXW9_CAEBR
          Length = 1075

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 57/170 (33%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPR--------FGGGLGGGPAG 190
            SS    G  + G  + G +PA    P  +PA     A +P          GGG GGG +G
Sbjct: 796  SSGGGGGGGSSGGYSGGSAPAPASEPAPAPAPEQAPAPAPAPAPSGGYSSGGGGGGGSSG 855

Query: 191  G-AGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGY--- 358
            G +G  APA  +  A +P     P+ PA A SS GYS G S      G+ GG + GY   
Sbjct: 856  GYSGGSAPAPASEPAPAPAPEPEPA-PAPAPSSGGYSGGSSSGGGGGGSSGGSSGGYSGG 914

Query: 359  -ASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
             A+P  P      PA A P    A +  YS         S  Y+  S+PA
Sbjct: 915  SAAPPPPPPPAPEPAPA-PAPAPAPSGGYSSEGGGGGGSSGGYSGGSAPA 963

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTPGRSPAGRFTPRMSPA-----SPGYAAMSPRFGGGLGGGPAGGAG 199
            SS  ++G  + G   P   P     P  +PA     S GY++     GGG GG   G +G
Sbjct: 903  SSGGSSGGYSGGSAAPPPPPPPAPEPAPAPAPAPAPSGGYSSE----GGGGGGSSGGYSG 958

Query: 200  AYAPASPAYMATSPGMGYSPS-TPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASPQSP 376
              APA  +  A +P     P+  PA A SS GYS G S      G+ GG + GY+   + 
Sbjct: 959  GSAPAPASEPAPAPAPEPEPAPAPASAPSSGGYSGGSSSGGGGGGSSGGSSGGYSGGSAA 1018

Query: 377  GYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
               P  P    P    A A   +P++P+   +S
Sbjct: 1019 PPPPPPPPPPSPAPEPALAPEAAPAAPSGGGYS 1051

[249][TOP]
>UniRef100_A6YIY0 Major ampullate spidroin 2 n=1 Tax=Latrodectus hesperus
            RepID=A6YIY0_9ARAC
          Length = 3779

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 55/156 (35%), Positives = 62/156 (39%), Gaps = 1/156 (0%)
 Frame = +2

Query: 41   ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 220
            A AA     G   PGR  A  + P  S A+   AA S R G G G    GGAGA A A+ 
Sbjct: 3150 AGAAAAVAAGGAGPGRQQA--YGPGGSGAAAAAAAGSGRSGYGPGAAGTGGAGAAAAAAA 3207

Query: 221  AYMATSPGMGYSPSTPALAVSSPGYSPGY-SPTSPSVGARGGPAAGYASPQSPGYVPTSP 397
                +     Y P     A +S    PGY        G  G  AA  A    PG   T  
Sbjct: 3208 GGAGSGRQQAYGPGGSGAAAASAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGPG---TQQ 3264

Query: 398  AYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA 505
            AY  PG   AAA   + S P  S + P  A  S PA
Sbjct: 3265 AYG-PGGSGAAAAAAAASGPGPSGYEPGAAGPSGPA 3299

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 54/166 (32%), Positives = 63/166 (37%), Gaps = 2/166 (1%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTP-GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAP 211
            ++A AAG A PGR    G   AG      + A PG +   P   G  G G AG A A A 
Sbjct: 2673 AAAAAAGGAGPGRQQAYGPGGAGAAAAAAAAAGPGPSGYGPGASGPSGTGGAGAAAAAAA 2732

Query: 212  ASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGPAAGYASP-QSPGYVP 388
            A      + PG GY         S PG   GY P      A    AAG A P +  GY P
Sbjct: 2733 AG----GSGPG-GYGQGASGYGPSGPGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQGYGP 2787

Query: 389  TSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQPPSRR 526
             S   A      AA          Y P     AAA++     P R+
Sbjct: 2788 GSSGAA---AAAAAGGPGYGGPQGYGPGGAGAAAAAAAGGAGPGRQ 2830

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 53/160 (33%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
            ++A AAG A PGR          + P  S A+   AA  P +GG  G GP GGAGA A A
Sbjct: 1566 AAAAAAGGAGPGRQQG-------YGPGSSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAA 1617

Query: 215  SPAYMATSPGMGYSPS-TPALAVSSPGYSP-GYSPTSPSVGARGGPAAGYASPQSPGYVP 388
            +           Y P  + A A ++ G  P GY P +   G  G  AA  A    PG   
Sbjct: 1618 AAGGAGPGRQQAYGPGGSGAAAAAAAGTGPSGYGPGAAGPGGAGAAAAAAAGSAGPG--- 1674

Query: 389  TSPAYARPGT-VVAAANVYSPSSPAYSPFSPNYAAASSPA 505
               AY   G+   AAA    P       + P  A A++ A
Sbjct: 1675 RQQAYGPGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAA 1714

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 53/160 (33%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
            ++A AAG A PGR          + P  S A+   AA  P +GG  G GP GGAGA A A
Sbjct: 2344 AAAAAAGGAGPGRQQG-------YGPGSSGAAAAAAAGGPGYGGQQGYGP-GGAGAAAAA 2395

Query: 215  SPAYMATSPGMGYSPS-TPALAVSSPGYSP-GYSPTSPSVGARGGPAAGYASPQSPGYVP 388
            +           Y P  + A A ++ G  P GY P +   G  G  AA  A    PG   
Sbjct: 2396 AAGGAGPGRQQAYGPGGSGAAAAAAAGTGPSGYGPGAAGPGGAGAAAAAAAGGAGPG--- 2452

Query: 389  TSPAYARPGT-VVAAANVYSPSSPAYSPFSPNYAAASSPA 505
               AY   G+   AAA    P       + P  A A++ A
Sbjct: 2453 RQQAYGPGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAA 2492

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 62/190 (32%), Positives = 75/190 (39%), Gaps = 29/190 (15%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPA 214
            ++A AAG A PGR   G  P G        A+   AA  P +GG  G GP GGAGA A A
Sbjct: 2627 AAAAAAGGAGPGRQQ-GYGPGG--------AAAAAAAGGPGYGGQQGYGP-GGAGAAAAA 2676

Query: 215  SPAYMATSPGMGYSP-----STPALAVSSPG---YSPGYSPTSPSVGARGGPAAGYASPQ 370
            +           Y P     +  A A + PG   Y PG S  S + GA    AA  A   
Sbjct: 2677 AAGGAGPGRQQAYGPGGAGAAAAAAAAAGPGPSGYGPGASGPSGTGGAGAAAAAAAAGGS 2736

Query: 371  SP--------GYVPTSPAYAR------PGTVVAAANVYSPSSP----AYSPFSPNYAAAS 496
             P        GY P+ P   +       G   AAA     + P     Y P S   AAA+
Sbjct: 2737 GPGGYGQGASGYGPSGPGGQQGYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAA 2796

Query: 497  S---PAYQPP 517
            +   P Y  P
Sbjct: 2797 AAGGPGYGGP 2806

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 60/181 (33%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
 Frame = +2

Query: 35   SSADAAGRATPGRMT---PGRSPA----------GR---FTPRMSPASPGYAAMSPRFGG 166
            ++A AAG A PGR     PG S A          GR   + P  S A+   AA  P +GG
Sbjct: 1164 AAAAAAGGAGPGRQQAYGPGGSGAAAAAASGAGPGRQQVYGPGGSGAAAAAAAGGPGYGG 1223

Query: 167  GLGGGPAG-GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPG---YSPGYS-PTSPSV- 328
              G GP G GA A A A  A   T    G   S  A A + PG   Y PG + P+ P + 
Sbjct: 1224 QQGYGPGGAGAAAAAAAGGAGQGTRQAYGPGGSGAAAAAAGPGPSGYGPGAAGPSGPGLA 1283

Query: 329  GARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAY 508
            GA    AAG + P   G  P+   Y + GT       Y P     +  +   A  + P  
Sbjct: 1284 GAAAAAAAGGSGPGGNGQRPS--GYGQSGT--GGQQGYGPGGSGAAAAAAAAAGGAGPGR 1339

Query: 509  Q 511
            Q
Sbjct: 1340 Q 1340

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 60/176 (34%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
 Frame = +2

Query: 47   AAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG-GAGAYAPASPA 223
            AA  A  G   PGR  A  + P  S A+   AA  P +GG  G GP G GA A A A  A
Sbjct: 2864 AAAVAAAGGAGPGRQQA--YGPGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGA 2921

Query: 224  YMATSP-----GMGYSPSTPALAVSSP-GYSPGYSPTSPSVGARGGPAAGYASPQSP--- 376
               T       G G + +  A A S P GY PG +  S   GA    AA  A    P   
Sbjct: 2922 GPGTQQLYGPGGSGAAAAAAAAAGSGPSGYGPGAAGPSGPGGAGAAAAAASAGGSGPGGY 2981

Query: 377  -----GYVPTSPAYAR------PGTVVAAANVYSPSSP----AYSPFSPNYAAASS 499
                 GY PT P   +       G   AAA     + P     Y P S   AAA++
Sbjct: 2982 GQGPSGYGPTGPVGQQGYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAA 3037

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 48/152 (31%), Positives = 58/152 (38%), Gaps = 9/152 (5%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
            + P  S A AA  A  G   PGR     + P  S A+   AA  P +GG  G GP GGAG
Sbjct: 2759 YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGPQGYGP-GGAG 2815

Query: 200  AYAPASPAYMATSPGMGYSPSTPALAVSSPGYSP-GYSPTSP--------SVGARGGPAA 352
            A A A+           Y P     A ++ G  P GY P +         +V A GG   
Sbjct: 2816 AAAAAAAGGAGPGRQQAYGPGGSGAAAAAAGSGPSGYGPGAAGPGGTGAAAVAAAGGAGP 2875

Query: 353  GYASPQSPGYVPTSPAYARPGTVVAAANVYSP 448
            G      PG    + A A  G        Y P
Sbjct: 2876 GRQQAYGPGGSGAAAAAAAGGPGYGGQQGYGP 2907

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 55/167 (32%), Positives = 64/167 (38%), Gaps = 12/167 (7%)
 Frame = +2

Query: 41   ADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAGAYAPASP 220
            A AA  A  G    GR  A  + P  S A+   AA  P +GG  G GP GGAGA A A+ 
Sbjct: 3199 AGAAAAAAAGGAGSGRQQA--YGPGGSGAAAASAAGGPGYGGQQGYGP-GGAGAAAAAAA 3255

Query: 221  AYMATSPGMGYSP-----STPALAVSSPG---YSPGYSPTSPSVGARGGPAAGYASPQSP 376
                      Y P     +  A A S PG   Y PG +  S   GA    AA  A    P
Sbjct: 3256 GGAGPGTQQAYGPGGSGAAAAAAAASGPGPSGYEPGAAGPSGPAGAGAAAAAAAAGGSGP 3315

Query: 377  GYVPTSPAYARPGTVVAAANVYSPSSP----AYSPFSPNYAAASSPA 505
            G     P            + Y PS P     Y P     AAA++ A
Sbjct: 3316 GGYGQGP------------SGYGPSGPGGQQGYGPGGSGAAAAAAAA 3350

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 57/193 (29%), Positives = 68/193 (35%), Gaps = 24/193 (12%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A A   P      AA  A  G   PGR  A  + P  S A+   AA  P +GG  G GP 
Sbjct: 3417 AAAGSGPSGYGPGAAAAAAAGGAGPGRQQA--YGPGGSGAAAAAAAGGPGYGGQQGYGP- 3473

Query: 188  GGAGAYAPASPAYMATSPG------MGYSPS---------------TPALAVSSPGYSPG 304
            GGAGA A A+     + PG       GY PS                 A   + PG   G
Sbjct: 3474 GGAGAAAAAAAG--GSGPGGYGQGPSGYGPSGSGGQGYGQGGSGAAAAAAGGAGPGRQQG 3531

Query: 305  YSPTSP---SVGARGGPAAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFS 475
            Y P S    +  A GGP  G      PG    + A A  G        Y P     +  +
Sbjct: 3532 YGPGSSGAAAAAAAGGPGFGGQQGYGPGGSGAAAAAAAGGAGPGRQQAYGPGGSGAAAAA 3591

Query: 476  PNYAAASSPAYQP 514
               A +    Y P
Sbjct: 3592 AAAAGSGPSGYGP 3604

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 57/177 (32%), Positives = 69/177 (38%), Gaps = 12/177 (6%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG-- 193
            + P  S A AA  A  G   PGR     + P  S A+   AA  P +GG  G GP G   
Sbjct: 1317 YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGA 1374

Query: 194  -AGAYAPASPAYMATSPGMGYSPSTPALAVSS----PGYSPGYSPTS---PSVGARGGPA 349
             A A A  +      + G G S +  A A ++    PG   GY P S    +  A GGP 
Sbjct: 1375 AAAAAAGGAGPGTQQAYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGP- 1433

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS--PAYQP 514
             GY   Q  G     P  A      AA    +    AY P     AAA S    Y+P
Sbjct: 1434 -GYGGQQGYG-----PGGAGAAAAAAAGGAGAGRQQAYGPGGSGAAAAGSGPSGYEP 1484

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 55/170 (32%), Positives = 66/170 (38%), Gaps = 10/170 (5%)
 Frame = +2

Query: 20   FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGG-- 193
            + P  S A AA  A  G   PGR     + P  S A+   AA  P +GG  G GP G   
Sbjct: 2095 YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGA 2152

Query: 194  -AGAYAPASPAYMATSPGMGYSPSTPALAVSS----PGYSPGYSPTS---PSVGARGGPA 349
             A A A  +      + G G S +  A A ++    PG   GY P S    +  A GGP 
Sbjct: 2153 AAAAAAGGAGPGTQQAYGPGGSGAAAAAAAAAGGAGPGRQQGYGPGSSGAAAAAAAGGP- 2211

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASS 499
             GY   Q  G     P  A      AA    +    AY P     AAA S
Sbjct: 2212 -GYGGQQGYG-----PGGAGAAAAAAAGGAGAGRQQAYGPGGSGAAAAGS 2255

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 59/197 (29%), Positives = 71/197 (36%), Gaps = 40/197 (20%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTP----GRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG- 199
            ++A AAG A PGR       G   A        P+  G  A  P   G      AGGAG 
Sbjct: 2392 AAAAAAGGAGPGRQQAYGPGGSGAAAAAAAGTGPSGYGPGAAGPGGAGAAAAAAAGGAGP 2451

Query: 200  ----AYAP----ASPAYMATSPG----MGYSPSTPALAVSS------PGYSPGYSPTSPS 325
                AY P    A+ A  A  PG     GY P     A ++      PG    Y P    
Sbjct: 2452 GRQQAYGPGGSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAGGAGPGTQQAYGPGGSG 2511

Query: 326  VGARGGPAAGYASP-QSPGYVPTS-----------PAYA-----RPGTVVAAANVYSPSS 454
              A    AAG A P +  GY P S           P Y       PG   AAA   + + 
Sbjct: 2512 AAAAAAAAAGGAGPDRQQGYGPGSSGAAAAAAAGGPGYGGQQGYGPGGAGAAAAAAAAAG 2571

Query: 455  PAYSPFSPNYAAASSPA 505
            P  S + P  A A++ A
Sbjct: 2572 PGPSGYGPGGAGAAAAA 2588

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 56/169 (33%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
 Frame = +2

Query: 35   SSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG-----GAG 199
            ++A AAG A PGR          + P  S A+   AA  P FGG  G GP G      A 
Sbjct: 3516 AAAAAAGGAGPGRQQG-------YGPGSSGAAAAAAAGGPGFGGQQGYGPGGSGAAAAAA 3568

Query: 200  AYAPASPAYMATSP-GMGYSPSTPALAVSSP-GYSPGYS-PTSP-SVGARGGPAAGYASP 367
            A         A  P G G + +  A A S P GY P  + P+ P   GA GG   G    
Sbjct: 3569 AGGAGPGRQQAYGPGGSGAAAAAAAAAGSGPSGYGPSAAGPSGPGGSGAAGGSGPGGFGQ 3628

Query: 368  QSPGYVPTSPAYAR---PGTVVAAANVYSPSSPAYSP--FSPNYAAASS 499
               GY P+ P   +   PG   AAA   +  S  Y P  + P+  A+S+
Sbjct: 3629 GPAGYGPSGPGGQQGYGPGASGAAAAAAASGSGGYGPSQYVPSSVASSA 3677

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 61/168 (36%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
 Frame = +2

Query: 20  FSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAGGAG 199
           + P  S A AA  A  G   PGR     + P  S A+   AA  P + G    GP GGAG
Sbjct: 438 YGPGGSGAAAAAAAAAGGAGPGRQQG--YGPGGSGAAAATAAGGPGYVGQQRYGP-GGAG 494

Query: 200 AYAPASPAYMATSPGMGYSP--STPALAVSSPGYSP-GYSP-TSPSVGARGGPAAGYASP 367
           A A A+      S    Y P  S PA A ++ G  P GY P  S  VGA    AA   S 
Sbjct: 495 AAAAAAAGSAGPSRQQAYGPGGSGPAAATAAAGSGPSGYGPGASGPVGADAAAAAATGS- 553

Query: 368 QSPGYVPTSPAYARPGTVVAAANVYSPSSP----AYSPFSPNYAAASS 499
             PG      AY  PG   AAA   S + P     Y P     AAA++
Sbjct: 554 AGPG---RQQAYG-PGESGAAAAAASGAGPGRQLGYGPGGSGAAAAAA 597

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 55/185 (29%), Positives = 69/185 (37%), Gaps = 22/185 (11%)
 Frame = +2

Query: 17   SFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG-- 190
            ++ P  S A AA  A  G   P R     + P  S A+   AA  P +GG  G GP G  
Sbjct: 1726 AYGPGGSGAAAAAAAAAGGAGPDRQQG--YGPGSSGAAAAAAAGGPGYGGQQGYGPGGAG 1783

Query: 191  -------------------GAGAYAPASPAYMATSPGMGYSPSTPALAVSSPGYSPGYSP 313
                               GAGA A A+ A  +   G G  PS    + S PG   GY P
Sbjct: 1784 AAAAAAAAAGPGPSGYGPGGAGAAAAAAAAGGSGPGGYGQGPS--GYSASGPGGQQGYGP 1841

Query: 314  TSPSVGARGGPAAGYA-SPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAA 490
                + A    AAG A + +  GY P     A      AAA    P       + P  A 
Sbjct: 1842 GGSGLAAAAAAAAGGAGTGRQQGYGPGGSGAA------AAAAAVGPGYGGQQGYGPGGAG 1895

Query: 491  ASSPA 505
            A++ A
Sbjct: 1896 AAAAA 1900

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 55/169 (32%), Positives = 62/169 (36%), Gaps = 6/169 (3%)
 Frame = +2

Query: 8    ATASFSPIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPA 187
            A A   P       AG A       G  P G           GY    P  GG  G GP 
Sbjct: 2568 AAAGPGPSGYGPGGAGAAAAAAAAGGSGPGG-----YGQGPSGYGPSGP--GGQQGNGP- 2619

Query: 188  GGAGAYAPASPAYMATSPG--MGYSP--STPALAVSSPGY--SPGYSPTSPSVGARGGPA 349
            GG+GA A A+ A     PG   GY P  +  A A   PGY    GY P     G  G  A
Sbjct: 2620 GGSGAAAAAAAAAGGAGPGRQQGYGPGGAAAAAAAGGPGYGGQQGYGP-----GGAGAAA 2674

Query: 350  AGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAAS 496
            A  A    PG      AY  PG   AAA   + + P  S + P  +  S
Sbjct: 2675 AAAAGGAGPG---RQQAYG-PGGAGAAAAAAAAAGPGPSGYGPGASGPS 2719

[250][TOP]
>UniRef100_Q9NFX7 Chorion protein s18 n=1 Tax=Ceratitis capitata RepID=Q9NFX7_CERCA
          Length = 332

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 3/170 (1%)
 Frame = +2

Query: 14  ASFS-PIMSSADAAGRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLGGGPAG 190
           AS+S P  + A +     P    P  +PA    P  S  +P Y+A +P +       PA 
Sbjct: 170 ASYSAPAPAPAASYSAPAPSYSAPAPAPA----PSYSAPAPSYSAPAPSYSAP---APAP 222

Query: 191 GAGAY-APASPAYMATSPGMGYSPSTPALAVSSPGYSPG-YSPTSPSVGARGGPAAGYAS 364
              AY APA   Y A +P    +P+    +  +P  +P  YS  +P+  +   PAA Y++
Sbjct: 223 APAAYSAPAPAVYSAPAPAAYSAPAPAVYSAPAPAPAPAAYSAPAPAAYSAPAPAA-YSA 281

Query: 365 PQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPAYQP 514
           P S GY  ++PA A P    AAA+  S ++ A S  S +Y AA +PA  P
Sbjct: 282 PASSGYGASAPAAAAP----AAAHQPS-AAAARSYISGSYGAAYAPAPAP 326

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
 Frame = +2

Query: 173 GGGPAGGAGAYAPAS--PAYMATSPGMGYSPSTPALAVSSPGYSPGYSPTSPSVGARGGP 346
           G  P+GG  AY   S   +Y A +P   YS   PA A S    +P YS  +P+      P
Sbjct: 144 GSYPSGGNLAYVIQSGGSSYSAPAPAASYSAPAPAPAASYSAPAPSYSAPAPA------P 197

Query: 347 AAGYASPQSPGYVPTSPAYARPGTVVAAANVYSPSSPAYSPFSPNYAAASSPA-YQPPS 520
           A  Y++P +P Y   +P+Y+ P    A A   +P+   YS  +P   +A +PA Y  P+
Sbjct: 198 APSYSAP-APSYSAPAPSYSAPAPAPAPAAYSAPAPAVYSAPAPAAYSAPAPAVYSAPA 255