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[1][TOP]
>UniRef100_UPI0001986315 PREDICTED: similar to Os02g0672700 n=1 Tax=Vitis vinifera
RepID=UPI0001986315
Length = 111
Score = 171 bits (434), Expect = 3e-41
Identities = 72/111 (64%), Positives = 88/111 (79%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP+C N L++ELP+MG +R FC TCPYVC+IE VKIKRKQRLV+KEI+P+ S DD
Sbjct: 1 MEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFSKDD 60
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
MKN PTT+ CP+C+ KA + ++Q RSADEP + FYWCLNE C QWRED
Sbjct: 61 MKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENCGRQWRED 111
[2][TOP]
>UniRef100_C6T364 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T364_SOYBN
Length = 111
Score = 161 bits (408), Expect = 3e-38
Identities = 72/110 (65%), Positives = 83/110 (75%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP+C NML++ELP MG SR FC CPYVC IE V+IKRKQRLV KEI+P+ S DD
Sbjct: 1 MEFCPTCGNMLQYELPYMGRPSRFFCSACPYVCLIENRVEIKRKQRLVSKEIEPIFSEDD 60
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
M NA +TE CP C H KAA+ E Q RSAD PAT+FY CLN +C+ QWRE
Sbjct: 61 MTNAASTEATCPFCGHGKAAFKEFQTRSADGPATLFYKCLNNECKKQWRE 110
[3][TOP]
>UniRef100_B9SBZ2 DNA-directed RNA polymerase III, putative n=1 Tax=Ricinus communis
RepID=B9SBZ2_RICCO
Length = 112
Score = 154 bits (389), Expect = 4e-36
Identities = 67/112 (59%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP+C +L++ELPNMG ++R +C TCPYVC IE VKIKRKQ+L++KEI+PV + DD
Sbjct: 1 MEFCPTCGVLLRYELPNMGQSARFYCSTCPYVCSIESRVKIKRKQQLIKKEIEPVFTLDD 60
Query: 358 -MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
MK TE CP+C+ +A + +QIRSADEPAT FY+CLNEKC WRE+
Sbjct: 61 MMKGGSETEATCPHCNFGRARFQSLQIRSADEPATTFYFCLNEKCSRVWREE 112
[4][TOP]
>UniRef100_B9I5C8 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I5C8_POPTR
Length = 112
Score = 144 bits (364), Expect = 3e-33
Identities = 62/112 (55%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP+C +L++E PNMG +R +C TCPY IE VKIKRKQ+L +KEI+P+ + +D
Sbjct: 1 MEFCPTCGMLLRYETPNMGQAARFYCPTCPYFASIESRVKIKRKQKLAKKEIEPIFTLED 60
Query: 358 MK-NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
MK T+ CP+C+ +A + ++QIRSADEPAT FY+CLNEKC WRED
Sbjct: 61 MKTGGAETDATCPHCNFGRACFQQIQIRSADEPATTFYFCLNEKCGRMWRED 112
[5][TOP]
>UniRef100_Q8LE40 DNA-directed RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
RepID=Q8LE40_ARATH
Length = 106
Score = 135 bits (339), Expect = 3e-30
Identities = 63/111 (56%), Positives = 79/111 (71%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP+C N+L++E G +SR FC TCPYV YIE+ V+IK+KQ LV+K I+PV++ DD
Sbjct: 1 MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVAYIERRVEIKKKQLLVKKSIEPVVTKDD 57
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ A TE CP C HDKA + MQIRSADEP + FY CL KC WRE+
Sbjct: 58 IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWREE 106
[6][TOP]
>UniRef100_Q9LNK0 DNA-directed RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
RepID=Q9LNK0_ARATH
Length = 106
Score = 132 bits (333), Expect = 1e-29
Identities = 62/111 (55%), Positives = 78/111 (70%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP+C N+L++E G NSR FC TCPYV YI++ V+IK+KQ LV+K I+ V++ DD
Sbjct: 1 MEFCPTCGNLLRYE---GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 57
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ A TE CP C HDKA + MQIRSADEP + FY CL KC WRE+
Sbjct: 58 IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWREE 106
[7][TOP]
>UniRef100_Q9ZQC0 DNA-directed RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
RepID=Q9ZQC0_ARATH
Length = 106
Score = 131 bits (330), Expect = 3e-29
Identities = 62/111 (55%), Positives = 78/111 (70%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP+C N+L++E G +SR FC TCPYV IE+ V+IK+KQ LV+K I+PV++ DD
Sbjct: 1 MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDD 57
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ A TE CP C HDKA + MQIRSADEP + FY CL KC WRE+
Sbjct: 58 IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWREE 106
[8][TOP]
>UniRef100_C5Y1A6 Putative uncharacterized protein Sb04g032090 n=1 Tax=Sorghum
bicolor RepID=C5Y1A6_SORBI
Length = 166
Score = 127 bits (320), Expect = 4e-28
Identities = 58/112 (51%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISY-D 354
MEFCP C +L+ + H RLFC CPYVC I+ KI +K RLV+KE++P+ S D
Sbjct: 57 MEFCPVCGMLLQIDPGTASHRLRLFCSVCPYVCPIQN--KIVKKARLVKKEVEPIFSTAD 114
Query: 355 DMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+MK+AP T V C C+H +A + +MQIRSADEP T Y C E+C+H+WRED
Sbjct: 115 EMKSAPKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCKEECQHEWRED 166
[9][TOP]
>UniRef100_B4FDM3 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FDM3_MAIZE
Length = 110
Score = 123 bits (309), Expect = 8e-27
Identities = 58/112 (51%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISY-D 354
MEFCP C +L+ + H RLFC CPYVC I KI +K RLV+KE++P+ S D
Sbjct: 1 MEFCPVCGILLQIDPGTGSHRLRLFCPVCPYVCPILN--KIVKKARLVKKEVEPISSTAD 58
Query: 355 DMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+MK+AP T V C C+H +A + +MQIRSADEP T Y C E+C+H+WRED
Sbjct: 59 EMKSAPKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCKEECQHEWRED 110
[10][TOP]
>UniRef100_Q6EU09 DNA-directed RNA polymerase subunit n=1 Tax=Oryza sativa Japonica
Group RepID=Q6EU09_ORYSJ
Length = 110
Score = 123 bits (308), Expect = 1e-26
Identities = 56/112 (50%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP C +L+ + G+ R +C TCPYVC ++ KI +K RLV+KE++P+ S D
Sbjct: 1 MEFCPGCGMLLQIQPATGGNRLRFYCPTCPYVCPVKN--KIVKKARLVKKEVEPIFSDSD 58
Query: 358 -MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
MKNAP T CP C + +A Y +MQIRSADEP + FY C E+C+ WRED
Sbjct: 59 AMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRED 110
[11][TOP]
>UniRef100_A9SIZ2 DNA-directed RNA polymerase subunit n=1 Tax=Physcomitrella patens
subsp. patens RepID=A9SIZ2_PHYPA
Length = 110
Score = 121 bits (303), Expect = 4e-26
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M+FCP+C+N+L E P+MG R FC TCPYV +++ KI +K +L +KE+D V+ +D
Sbjct: 1 MDFCPTCANLLLVENPSMGRPLRYFCPTCPYVYVVDR--KISKKLKLKKKEVDDVLGGED 58
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
KN T V CPNCS+ +A + ++QIRSADEP T FY C N C H+W+E+
Sbjct: 59 AWKNVDRTTVTCPNCSYGQAYFMQIQIRSADEPMTTFYKCCNIDCNHRWKEN 110
[12][TOP]
>UniRef100_B9F1L5 DNA-directed RNA polymerase subunit n=2 Tax=Oryza sativa
RepID=B9F1L5_ORYSJ
Length = 106
Score = 119 bits (298), Expect = 2e-25
Identities = 56/112 (50%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP C +L+ + G+ R +C TCPYVC I K K RLV+KE++P+ S D
Sbjct: 1 MEFCPGCGMLLQIQPATGGNRLRFYCPTCPYVCPIVK------KARLVKKEVEPIFSDSD 54
Query: 358 -MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
MKNAP T CP C + +A Y +MQIRSADEP + FY C E+C+ WRED
Sbjct: 55 AMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRED 106
[13][TOP]
>UniRef100_A8I4N7 Predicted protein n=1 Tax=Chlamydomonas reinhardtii
RepID=A8I4N7_CHLRE
Length = 109
Score = 105 bits (263), Expect = 2e-21
Identities = 51/109 (46%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
+CP+C+NML EL R FCQ CPYV I+K KI + L RK++D V+ +D
Sbjct: 4 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDK--KISKMAPLARKQVDDVLGGEDAW 61
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
KN T+ CP CS+ +A + E+Q RSADEPAT+F+ C+ +C H+WRE
Sbjct: 62 KNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCV--QCAHRWRE 108
[14][TOP]
>UniRef100_B3NJW4 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila erecta
RepID=B3NJW4_DROER
Length = 108
Score = 97.1 bits (240), Expect = 8e-19
Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCPSC N+L E H R C TCPY+ I + + K RL KE+D V+
Sbjct: 4 FCPSCGNILIIEEDTNCH--RFTCNTCPYISKIRRKISAKTFPRL--KEVDHVLGGKAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T+ CP CSH +A + +MQ RSADEP T FY C N +C H WR+
Sbjct: 60 ENVDSTDAECPTCSHKRAYFMQMQTRSADEPMTTFYKCCNHECNHTWRD 108
[15][TOP]
>UniRef100_UPI000151ABB6 hypothetical protein PGUG_01395 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151ABB6
Length = 111
Score = 96.7 bits (239), Expect = 1e-18
Identities = 53/114 (46%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP CSNML L G N RL+C TCPY I G+++ ++ L RK++D V+ D
Sbjct: 2 LSFCPYCSNMLLVGLSEDGCN-RLYCTTCPYEFKIN-GLQMYDRKNLSRKQVDDVLGGDG 59
Query: 358 M-KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+N T +CP +C DKA + ++QIRSADEP T FY C+ KC HQWRE+
Sbjct: 60 AWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCNHQWREN 111
[16][TOP]
>UniRef100_B4KR43 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila mojavensis
RepID=B4KR43_DROMO
Length = 108
Score = 96.3 bits (238), Expect = 1e-18
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCPSC N+L E H R C TCP++ I++ + K RL KE+D V+
Sbjct: 4 FCPSCGNILIIEEDTSSH--RFTCNTCPFISKIKRKITTKTYPRL--KEVDHVLGGVAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T+ CP+CSH +A + ++Q RSADEP T FY C N +C H WR+
Sbjct: 60 ENVDSTDAECPSCSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108
[17][TOP]
>UniRef100_Q1RPU6 DNA-directed RNA polymerase subunit n=1 Tax=Ciona intestinalis
RepID=Q1RPU6_CIOIN
Length = 108
Score = 95.9 bits (237), Expect = 2e-18
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP+C N+L E N + R C TCPYV I + + K+ +L K +D V+
Sbjct: 4 FCPTCGNLLTVEEGNQCY--RFACPTCPYVHNITQKISSKKFPKL--KAVDDVLGGSAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +TE +CP C HD+A + ++Q RSADEP TIFY C + C HQWRE
Sbjct: 60 ENVDSTEEKCPKCEHDRAYFMQIQTRSADEPMTIFYKCCSPTCGHQWRE 108
[18][TOP]
>UniRef100_C1DZH6 DNA-directed RNA polymerase subunit n=1 Tax=Micromonas sp. RCC299
RepID=C1DZH6_9CHLO
Length = 109
Score = 95.5 bits (236), Expect = 2e-18
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP C+NML + G +L+CQTCPY I + ++ K + RK++D V+ DD
Sbjct: 2 LSFCPHCANMLLVDHCPEGGGLKLYCQTCPYEHAITETIRDPIK--IARKQVDDVLGGDD 59
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
KN T CP C H +A + ++QIRSADEP + FY C KC +QWRE
Sbjct: 60 AWKNVDKTSATCPKCDHGQAYFMQIQIRSADEPMSTFYKCC--KCANQWRE 108
[19][TOP]
>UniRef100_B4PA35 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila yakuba
RepID=B4PA35_DROYA
Length = 108
Score = 95.5 bits (236), Expect = 2e-18
Identities = 47/109 (43%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCPSC N+L E H R C TCPY+ I + + K RL KE+D V+
Sbjct: 4 FCPSCGNILIIEEDTNCH--RFTCNTCPYISKIRRKISAKTFPRL--KEVDHVLGGKAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T+ CP CSH +A + ++Q RSADEP T FY C N +C H WR+
Sbjct: 60 ENVDSTDAECPTCSHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108
[20][TOP]
>UniRef100_B4MPJ2 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila willistoni
RepID=B4MPJ2_DROWI
Length = 108
Score = 95.5 bits (236), Expect = 2e-18
Identities = 48/109 (44%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCPSC N+L E H+ L C TCPYV I + K RL KE+D V+
Sbjct: 4 FCPSCGNLLIIEEDTNSHH--LSCHTCPYVSKIRGKISTKTFPRL--KEVDHVLGGKAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T+ CP CSH++A + ++Q RSADEP T FY C N +C H WR+
Sbjct: 60 ENVDSTDAECPACSHNRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108
[21][TOP]
>UniRef100_B4ME99 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila virilis
RepID=B4ME99_DROVI
Length = 108
Score = 95.5 bits (236), Expect = 2e-18
Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCPSC N+L E H R C TCP++ I++ + K RL KE+D V+
Sbjct: 4 FCPSCGNILIIEEDTSSH--RFTCNTCPFISKIKRKISTKTYPRL--KEVDHVLGGVAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T+ CP CSH +A + ++Q RSADEP T FY C N +C H WR+
Sbjct: 60 ENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGHNWRD 108
[22][TOP]
>UniRef100_C5M563 DNA-directed RNA polymerase subunit n=1 Tax=Candida tropicalis
MYA-3404 RepID=C5M563_CANTT
Length = 111
Score = 95.5 bits (236), Expect = 2e-18
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP+CSNML N G N R +C TCPYV I G+++ +++L RKE+D V+ +
Sbjct: 2 LTFCPNCSNMLLINTGNDGLN-RFYCSTCPYVFKIS-GLQMYDRKKLHRKEVDDVLGGEG 59
Query: 358 M-KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T +CP +C DKA + ++QIRSADEP T FY C+ KC H+W+E+
Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKEN 111
[23][TOP]
>UniRef100_UPI000186DC84 DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186DC84
Length = 108
Score = 94.4 bits (233), Expect = 5e-18
Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNS-RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM 360
FCP+C+N+L E G S R C TCPY+ I + V + RL KE+D V+
Sbjct: 4 FCPTCANVLGVE---EGERSLRFACHTCPYIFNIARKVSSRYYPRL--KEVDDVLGGSAA 58
Query: 361 -KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +TE RCP CSH +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 59 WENVDSTEERCPKCSHSRAYFMQIQTRSADEPMTTFYKCCNPECGHRWRD 108
[24][TOP]
>UniRef100_A5DDP4 DNA-directed RNA polymerase subunit n=1 Tax=Pichia guilliermondii
RepID=A5DDP4_PICGU
Length = 111
Score = 94.4 bits (233), Expect = 5e-18
Identities = 52/114 (45%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP CSNML G N RL+C TCPY I G+++ ++ L RK++D V+ D
Sbjct: 2 LSFCPYCSNMLLVGSSEDGCN-RLYCTTCPYEFKIN-GLQMYDRKNLSRKQVDDVLGGDG 59
Query: 358 M-KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+N T +CP +C DKA + ++QIRSADEP T FY C+ KC HQWRE+
Sbjct: 60 AWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCNHQWREN 111
[25][TOP]
>UniRef100_A1ZBX4 DNA-directed RNA polymerase subunit n=2 Tax=melanogaster subgroup
RepID=A1ZBX4_DROME
Length = 108
Score = 94.0 bits (232), Expect = 7e-18
Identities = 46/109 (42%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCPSC N+L E H R C TCPY+ I + + K RL KE+D V+
Sbjct: 4 FCPSCGNILIIEEDTNCH--RFTCNTCPYISKIRRKISTKTFPRL--KEVDHVLGGKAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T+ CP C H +A + ++Q RSADEP T FY C N +C H WR+
Sbjct: 60 ENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108
[26][TOP]
>UniRef100_Q17L91 DNA-directed RNA polymerase subunit n=1 Tax=Aedes aegypti
RepID=Q17L91_AEDAE
Length = 108
Score = 93.2 bits (230), Expect = 1e-17
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNS-RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDD 357
FCP+C N+L E G +S R C TCPY+C I++ + + +L KE+D V+
Sbjct: 4 FCPTCGNLLLVE---EGTDSLRFSCNTCPYICKIKRKISTRIYPKL--KEVDHVMGGAAA 58
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T+ CP C+H++A + +MQ RSADEP T FY C N C H WRE
Sbjct: 59 WENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCCNPTCGHNWRE 108
[27][TOP]
>UniRef100_A8NJC4 DNA-directed RNA polymerase subunit n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8NJC4_COPC7
Length = 106
Score = 92.8 bits (229), Expect = 2e-17
Identities = 50/112 (44%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP+C+N+L G N + C TCPY I K + + + +L K++D V+ D+
Sbjct: 1 MLFCPTCANILVIS-QETGVN-KWACNTCPYEFPITKQMTSRTRMQL--KQVDDVLGGDE 56
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
M K+A T+ CP C+ DKA + ++QIRSADEP T FY C+N C HQWRE+
Sbjct: 57 MWKHADQTQASCPKCNFDKAYFYQLQIRSADEPMTTFYRCVN--CAHQWREN 106
[28][TOP]
>UniRef100_C4M8P1 RNA polymerase III subunit, putative n=1 Tax=Entamoeba histolytica
HM-1:IMSS RepID=C4M8P1_ENTHI
Length = 107
Score = 92.4 bits (228), Expect = 2e-17
Identities = 47/108 (43%), Positives = 60/108 (55%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FC +C N+L E G C TCPY K KI + L RK+ID V+ + K
Sbjct: 4 FCANCGNLLVVE---RGTELYFKCNTCPYKFTFNK--KIVYESELKRKQIDAVLGEEQWK 58
Query: 364 NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
NA TE+ C C H+ A + ++QIRSADEP T FY C N C +QWR+
Sbjct: 59 NAQKTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRD 106
[29][TOP]
>UniRef100_Q6BMC8 DNA-directed RNA polymerase subunit n=1 Tax=Debaryomyces hansenii
RepID=Q6BMC8_DEBHA
Length = 111
Score = 92.4 bits (228), Expect = 2e-17
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP C+NML + G N R FC TCPY I+ G ++ +++L RKE+D V+ +
Sbjct: 2 LSFCPYCANMLIMAQKDDGCN-RFFCSTCPYEFKID-GFQMYDRKKLSRKEVDDVLGGEG 59
Query: 358 M-KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T +CP +C DKA + ++QIRSADEP T FY C+ KC HQWRE+
Sbjct: 60 AWDNVDQTLAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCSHQWREN 111
[30][TOP]
>UniRef100_A3LW94 DNA-directed RNA polymerase subunit n=1 Tax=Pichia stipitis
RepID=A3LW94_PICST
Length = 111
Score = 92.4 bits (228), Expect = 2e-17
Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP+CSNML + G N R +C TCPY I G+ + +++L RKE+D V+ D
Sbjct: 2 LSFCPNCSNMLLISAGDDGCN-RFYCPTCPYEFKIN-GLSMFERKKLYRKEVDDVLGGDG 59
Query: 358 M-KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T +CP +C +KA + ++QIRSADEP T FY C+N C H+W+E+
Sbjct: 60 AWDNVDQTSAQCPVDSCGGNKAYFFQLQIRSADEPMTTFYKCVN--CGHKWKEN 111
[31][TOP]
>UniRef100_B0X903 DNA-directed RNA polymerase subunit n=1 Tax=Culex quinquefasciatus
RepID=B0X903_CULQU
Length = 108
Score = 92.0 bits (227), Expect = 3e-17
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNS-RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM 360
FCP+C N+L E G +S R C TCPY+C I++ + + +L KE+D V+
Sbjct: 4 FCPTCGNLLLVE---EGTDSLRFSCNTCPYICKIKRKISTRIYPKL--KEVDHVMGGSAA 58
Query: 361 -KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T+ CP C+H++A + +MQ RSADEP T FY C N C H WR+
Sbjct: 59 WENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCANPVCGHNWRD 108
[32][TOP]
>UniRef100_C4Y9I4 DNA-directed RNA polymerase subunit n=1 Tax=Clavispora lusitaniae
ATCC 42720 RepID=C4Y9I4_CLAL4
Length = 111
Score = 92.0 bits (227), Expect = 3e-17
Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNS--RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISY 351
+ FCP CSNML L + G ++ RL+C TCPY I G ++ ++ L RK++D V+
Sbjct: 2 LSFCPYCSNML---LVSQGEDNCNRLYCPTCPYEFRIS-GFQMFERKMLPRKDVDDVLGG 57
Query: 352 DDM-KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
D N T +CP +C +DKA + ++QIRSADEP T FY C KC HQWRE+
Sbjct: 58 DGAWDNVDQTAAQCPIDSCGNDKAYFFQLQIRSADEPMTTFYKC--TKCSHQWREN 111
[33][TOP]
>UniRef100_B0D7I7 DNA-directed RNA polymerase subunit n=1 Tax=Laccaria bicolor
S238N-H82 RepID=B0D7I7_LACBS
Length = 106
Score = 92.0 bits (227), Expect = 3e-17
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP+C+N+L G+N + C TC Y I K ++ + RLVRK++D V+ D+
Sbjct: 1 MLFCPTCANLLVIS-SETGYN-KWACNTCAYEFPISK--QMTSRTRLVRKQVDDVLGGDE 56
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
M +A T+ C C+HD+A + ++QIRSADEP T FY C + C HQWRE+
Sbjct: 57 MWAHADQTQASCDKCNHDQAYFYQLQIRSADEPMTTFYRCTS--CAHQWREN 106
[34][TOP]
>UniRef100_UPI00015B545C PREDICTED: similar to MGC68582 protein n=1 Tax=Nasonia vitripennis
RepID=UPI00015B545C
Length = 108
Score = 91.7 bits (226), Expect = 3e-17
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP+C N+L E + + R C TCPY+ I + V + +L KE+D V+
Sbjct: 4 FCPTCGNVLHVEEGTV--SMRFACNTCPYISNINRRVSSRTYPKL--KEVDDVLGGSAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +TE RCP CS+ +A + ++Q RSADEP T FY C N +C H WRE
Sbjct: 60 ENVDSTEERCPKCSNMRAYFMQIQTRSADEPMTTFYKCCNPQCGHNWRE 108
[35][TOP]
>UniRef100_UPI00003BE0F5 hypothetical protein DEHA0F07216g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BE0F5
Length = 111
Score = 91.7 bits (226), Expect = 3e-17
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP C+NML + G N R FC TCPY I+ G ++ +++L RKE+D V+ +
Sbjct: 2 LSFCPYCANMLIMAQKDDGCN-RFFCLTCPYEFKID-GFQMYDRKKLSRKEVDDVLGGEG 59
Query: 358 M-KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T +CP +C DKA + ++QIRSADEP T FY C+ KC HQWRE+
Sbjct: 60 AWDNVDQTLAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCSHQWREN 111
[36][TOP]
>UniRef100_B4J958 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila grimshawi
RepID=B4J958_DROGR
Length = 108
Score = 91.7 bits (226), Expect = 3e-17
Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCPSC N+L E H R C TCP++ I++ + K RL KE+D V+
Sbjct: 4 FCPSCGNILIIEEDTSSH--RFTCHTCPFISKIKRKITTKTFPRL--KEVDHVLGGIAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T+ CP CSH +A + ++Q RSADEP T FY C N +C + WR+
Sbjct: 60 ENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGNTWRD 108
[37][TOP]
>UniRef100_A9QVW4 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis brenneri
RepID=A9QVW4_CAEBE
Length = 108
Score = 91.7 bits (226), Expect = 3e-17
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP C L+ E + + R C CPYVC + V + +L K+ID V+
Sbjct: 2 LTFCPECGCTLQIEQGDQCN--RFSCPACPYVCPVTHSVSSRIYPKL--KDIDDVLGGPG 57
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+NA T+ RCP CSH++A + ++Q RSADEP TIFY C N C H+W+E
Sbjct: 58 AWENAQITDERCPVCSHERAYFMQLQTRSADEPMTIFYRCANNACAHRWKE 108
[38][TOP]
>UniRef100_A8XIZ3 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis briggsae
RepID=A8XIZ3_CAEBR
Length = 108
Score = 91.7 bits (226), Expect = 3e-17
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLF-CQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYD 354
+ FCP C +L+ E G + F C CPYVC I + + +L K+ID V+
Sbjct: 2 LTFCPECGCVLQIET---GEQCQQFSCSACPYVCPIVATISSRIYPKL--KDIDDVLGGP 56
Query: 355 DM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+NA T+ RCP CSH++A + ++Q RSADEP TIFY C N C H+W+E
Sbjct: 57 GAWENAQVTDERCPLCSHERAYFMQLQTRSADEPMTIFYRCANNSCAHRWKE 108
[39][TOP]
>UniRef100_C1MJC6 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MJC6_9CHLO
Length = 113
Score = 91.3 bits (225), Expect = 5e-17
Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 5/115 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNS----RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVI 345
+ FCPSC+NML G ++ +L CQTCPY + K ++ + RKE+D V+
Sbjct: 2 LTFCPSCANMLLVTTNAAGADASPCLKLICQTCPYAYDVTK--TLRDDVPVTRKEVDDVL 59
Query: 346 SYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
DD KN T CP C H +A + ++QIRSADEP + F+ C+ KC +QWRE
Sbjct: 60 GGDDAWKNVDKTAATCPKCDHGQAYFMQIQIRSADEPMSTFFKCV--KCGNQWRE 112
[40][TOP]
>UniRef100_Q5A5N9 DNA-directed RNA polymerase subunit n=1 Tax=Candida albicans
RepID=Q5A5N9_CANAL
Length = 111
Score = 91.3 bits (225), Expect = 5e-17
Identities = 49/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP+CSNML + G N R +C TCPY I G+++ +++L RKE+D V+ +
Sbjct: 2 LTFCPNCSNMLLISAGDDGLN-RFYCSTCPYEFKIN-GLQMYDRKKLNRKEVDDVLGGEG 59
Query: 358 M-KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T +CP +C DKA + ++QIRSADEP T FY C+ KC H+W+E+
Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKEN 111
[41][TOP]
>UniRef100_B9WCW5 DNA-directed RNA polymerase subunit n=1 Tax=Candida dubliniensis
CD36 RepID=B9WCW5_CANDC
Length = 111
Score = 91.3 bits (225), Expect = 5e-17
Identities = 49/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP+CSNML + G N R +C TCPY I G+++ +++L RKE+D V+ +
Sbjct: 2 LTFCPNCSNMLLISAGDDGLN-RFYCSTCPYEFKIN-GLQMYDRKKLHRKEVDDVLGGEG 59
Query: 358 M-KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T +CP +C DKA + ++QIRSADEP T FY C+ KC H+W+E+
Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKEN 111
[42][TOP]
>UniRef100_A7SWZ1 DNA-directed RNA polymerase subunit n=1 Tax=Nematostella vectensis
RepID=A7SWZ1_NEMVE
Length = 108
Score = 90.9 bits (224), Expect = 6e-17
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCPSC+N+L E R CQTCPYV I K V K+ +L KE+D V+
Sbjct: 4 FCPSCANVLVVEEGTGPSAYRFACQTCPYVHNIAKKVSSKKYPKL--KEVDDVLGGKSAW 61
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +TE RCP C H++A + ++Q RSADEP T FY C + C ++W+E
Sbjct: 62 ENVDSTEERCPKCDHNRAYFMQIQTRSADEPMTTFYKCCS--CGNRWKE 108
[43][TOP]
>UniRef100_B7P467 DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Ixodes
scapularis RepID=B7P467_IXOSC
Length = 109
Score = 90.5 bits (223), Expect = 8e-17
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNS-RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDD 357
FCP+C+N+L E G R C TCPYV I+ + ++ RL K++D V+
Sbjct: 5 FCPTCANILIVE---QGLECFRFACNTCPYVHNIKAKMSNRKYPRL--KDVDDVLGGAAA 59
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +TE +CP C H++A + ++Q RSADEP T FY C N+ C HQWRE
Sbjct: 60 WENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRE 109
[44][TOP]
>UniRef100_A4RUS3 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RUS3_OSTLU
Length = 120
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 12/122 (9%)
Frame = +1
Query: 178 MEFCPSCSNMLKFEL-----------PNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVR 324
+ FCP+C+N+L E +G RL C +CPY + GVK + R +
Sbjct: 2 LTFCPTCANLLLLERGAADASTSGAGAGVGGAVRLRCASCPYAYDVVDGVKQRVDAR--K 59
Query: 325 KEIDPVISYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQW 501
K +D V+ DD +N T CP C+HD+A + ++QIRSADEP ++FY C+ KC QW
Sbjct: 60 KTVDDVLGGDDAWRNVDKTSATCPGCAHDEAYFMQIQIRSADEPMSVFYKCV--KCARQW 117
Query: 502 RE 507
RE
Sbjct: 118 RE 119
[45][TOP]
>UniRef100_C3Y255 DNA-directed RNA polymerase subunit n=1 Tax=Branchiostoma floridae
RepID=C3Y255_BRAFL
Length = 108
Score = 90.1 bits (222), Expect = 1e-16
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP+C+N+L E + R CQTCPY+ I + K+ +L KE+D V+ +
Sbjct: 4 FCPTCANLLVAEEGEKCY--RFGCQTCPYIYNITHKISFKKYPKL--KEVDDVLGGPEAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
N +TE +CP C H +A + ++Q RSADEP T FY C + +C H+W++
Sbjct: 60 ANVDSTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCSAECGHRWKD 108
[46][TOP]
>UniRef100_B0ENS7 DNA-directed RNA polymerase III subunit RPC10, putative n=1
Tax=Entamoeba dispar SAW760 RepID=B0ENS7_ENTDI
Length = 107
Score = 90.1 bits (222), Expect = 1e-16
Identities = 46/108 (42%), Positives = 60/108 (55%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FC +C N+L E G C TCPY K KI + L RK+ID V+ + K
Sbjct: 4 FCANCGNLLVVE---RGTELYFKCSTCPYKFTFNK--KIVYESELKRKQIDAVLGEEQWK 58
Query: 364 NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
NA TE+ C C ++ A + ++QIRSADEP T FY C N C +QWR+
Sbjct: 59 NAQKTEIICEKCGYNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRD 106
[47][TOP]
>UniRef100_C4YKX9 DNA-directed RNA polymerase subunit n=1 Tax=Candida albicans
RepID=C4YKX9_CANAL
Length = 111
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP+CSNML + G N R +C TCPY I G+++ +++L RK++D V+ +
Sbjct: 2 LTFCPNCSNMLLISAGDDGLN-RFYCSTCPYEFKIN-GLQMYDRKKLNRKQVDDVLGGEG 59
Query: 358 M-KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T +CP +C DKA + ++QIRSADEP T FY C+ KC H+W+E+
Sbjct: 60 TWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCV--KCGHRWKEN 111
[48][TOP]
>UniRef100_Q6WCQ3 DNA-directed RNA polymerase subunit n=1 Tax=Ixodes scapularis
RepID=Q6WCQ3_IXOSC
Length = 108
Score = 89.4 bits (220), Expect = 2e-16
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNS-RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDD 357
FCP+C+N+L E G R C TCPYV I+ + ++ RL K++D V+
Sbjct: 4 FCPTCANILIVE---QGLECFRFACNTCPYVHNIKAKMSNRKYPRL--KDVDDVLGGAAA 58
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +TE +CP C H++A + ++Q RSADEP T FY C N+ C HQWR+
Sbjct: 59 WENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRD 108
[49][TOP]
>UniRef100_Q04307 DNA-directed RNA polymerase III subunit RPC10 n=5 Tax=Saccharomyces
cerevisiae RepID=RPC10_YEAST
Length = 110
Score = 88.6 bits (218), Expect = 3e-16
Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCPSC+NML + G + L C++CPY IE G++I +++L RKE+D V+
Sbjct: 2 LSFCPSCNNMLLITSGDSGVYT-LACRSCPYEFPIE-GIEIYDRKKLPRKEVDDVLG-GG 58
Query: 358 MKNAPTTEVRCPN---CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T+ +CPN C + A + ++QIRSADEP T FY C+N C H+W+E+
Sbjct: 59 WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVN--CGHRWKEN 110
[50][TOP]
>UniRef100_Q01CB3 RNA polymerase III subunit C11 (ISS) n=1 Tax=Ostreococcus tauri
RepID=Q01CB3_OSTTA
Length = 117
Score = 88.2 bits (217), Expect = 4e-16
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNM--------GHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEI 333
+ FCP+C+N+L E + G RL C CPY + GV+ ++ + RK +
Sbjct: 2 LTFCPTCANLLLIERESAVGTSSSGGGGGVRLRCAACPYAYDVVDGVR--QRVKTTRKTV 59
Query: 334 DPVISYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D V+ D+ +N T CP C H +A + ++QIRSADEP ++FY C +C HQWRE
Sbjct: 60 DDVLGGDEAWRNVDKTATTCPRCEHGEAYFMQIQIRSADEPMSVFYKCC--ECAHQWRE 116
[51][TOP]
>UniRef100_Q6P7G0 DNA-directed RNA polymerase subunit n=1 Tax=Xenopus laevis
RepID=Q6P7G0_XENLA
Length = 108
Score = 87.4 bits (215), Expect = 7e-16
Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP+C N+L E + R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPTCGNVLIVEEGQKCY--RFACNTCPYVHNINRKVTSRKYPKL--KEVDDVLGGSAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C+H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAETCPKCAHPRAYFMQIQTRSADEPMTTFYKCCNSQCGHRWRD 108
[52][TOP]
>UniRef100_C1BZC8 DNA-directed RNA polymerase subunit n=1 Tax=Esox lucius
RepID=C1BZC8_ESOLU
Length = 108
Score = 87.4 bits (215), Expect = 7e-16
Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C N+L E + R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPTCGNVLIVEEGQKCY--RFACNTCPYVHNITRKVNNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T +CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTPEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNHECGHRWRD 108
[53][TOP]
>UniRef100_B5G0B7 DNA-directed RNA polymerase subunit n=1 Tax=Taeniopygia guttata
RepID=B5G0B7_TAEGU
Length = 108
Score = 87.4 bits (215), Expect = 7e-16
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C N+L E H R C TCPYV + + V ++ RL KE+D V+
Sbjct: 4 FCPACGNVLVAEEGPRCH--RFACTTCPYVRNVTRKVTSRKYPRL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNPQCGHRWRD 108
[54][TOP]
>UniRef100_B3RF23 DNA-directed RNA polymerase subunit n=1 Tax=Sorex araneus
RepID=B3RF23_SORAR
Length = 108
Score = 87.4 bits (215), Expect = 7e-16
Identities = 46/109 (42%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCPSC N L E H R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPSCGNGLIVEEGQRCH--RFACNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAEPCPKCQHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
[55][TOP]
>UniRef100_A8QFI6 DNA-directed RNA polymerase subunit n=1 Tax=Brugia malayi
RepID=A8QFI6_BRUMA
Length = 108
Score = 87.4 bits (215), Expect = 7e-16
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLF-CQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM 360
FCP C + L+ E G N F C CPYV I K ++ + +L K++D V+
Sbjct: 4 FCPECGSSLQIE---EGSNCYQFACHNCPYVQPITKLIRSRHYPKL--KDLDEVLGGPGA 58
Query: 361 -KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+NA T RCP C+ D+A + ++Q RSADEP T+FY C N +C H+W+E
Sbjct: 59 WENAQITNERCPRCAGDRAYFMQLQTRSADEPMTVFYRCANSECAHRWKE 108
[56][TOP]
>UniRef100_Q5KEF1 RNA polymerase III smallest subunit, putative n=1
Tax=Filobasidiella neoformans RepID=Q5KEF1_CRYNE
Length = 132
Score = 87.0 bits (214), Expect = 9e-16
Identities = 47/111 (42%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP C+N L + + ++ C TCPY IE+ +I + L RKE+D V+ +
Sbjct: 1 MLFCPYCANSLT--IGDREDSTDKVCPTCPYQFIIER--QISMRTHLKRKEVDDVLGGKE 56
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
N T+ CP C H +A + +MQIRSADEP T FY C +C HQWRE
Sbjct: 57 AWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCC--ECGHQWRE 105
[57][TOP]
>UniRef100_Q55P07 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q55P07_CRYNE
Length = 132
Score = 87.0 bits (214), Expect = 9e-16
Identities = 47/111 (42%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP C+N L + + ++ C TCPY IE+ +I + L RKE+D V+ +
Sbjct: 1 MLFCPYCANSLT--IGDREDSTDKVCPTCPYQFIIER--QISMRTHLKRKEVDDVLGGKE 56
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
N T+ CP C H +A + +MQIRSADEP T FY C +C HQWRE
Sbjct: 57 AWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCC--ECGHQWRE 105
[58][TOP]
>UniRef100_B5XDQ5 DNA-directed RNA polymerase subunit n=2 Tax=Salmoninae
RepID=B5XDQ5_SALSA
Length = 108
Score = 86.7 bits (213), Expect = 1e-15
Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C N+L E + R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPTCGNVLIVEEGQKCY--RFACNTCPYVHNITRKVNNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T +CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGHRWRD 108
[59][TOP]
>UniRef100_B5KFS3 DNA-directed RNA polymerase subunit n=1 Tax=Taeniopygia guttata
RepID=B5KFS3_TAEGU
Length = 108
Score = 86.7 bits (213), Expect = 1e-15
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C N+L E H R C TCPYV + + V ++ RL KE+D V+
Sbjct: 4 FCPACGNVLVAEEGPRCH--RFACTTCPYVRNVTRKVTSRKYPRL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + + Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAEPCPKCEHPRAYFMQTQTRSADEPMTTFYKCCNPQCGHRWRD 108
[60][TOP]
>UniRef100_Q8BU05 DNA-directed RNA polymerase subunit n=1 Tax=Mus musculus
RepID=Q8BU05_MOUSE
Length = 107
Score = 86.7 bits (213), Expect = 1e-15
Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YD 354
M FCP C N L E H R C TCPYV I + V ++ +L KE+D V+
Sbjct: 1 MLFCPGCGNGLIVEEGQRCH--RFACNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAA 56
Query: 355 DMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 57 AWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 107
[61][TOP]
>UniRef100_UPI00005A1245 PREDICTED: similar to DNA-directed RNA polymerases III 12.5 kDa
polypeptide (RNA polymerase III C11 subunit) (HsC11p)
(hRPC11) n=1 Tax=Canis lupus familiaris
RepID=UPI00005A1245
Length = 132
Score = 86.3 bits (212), Expect = 1e-15
Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP C N L E H R C TCPYV I + V ++ +L KE+D V+
Sbjct: 28 FCPGCGNGLIVEEGQRCH--RFACNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 83
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 84 ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 132
[62][TOP]
>UniRef100_C1FXX2 DNA-directed RNA polymerase subunit n=1 Tax=Dasypus novemcinctus
RepID=C1FXX2_DASNO
Length = 108
Score = 86.3 bits (212), Expect = 1e-15
Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP C N L E H R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPGCGNGLIVEEGQRCH--RFACNTCPYVHNITRKVTSRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
[63][TOP]
>UniRef100_Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Homo sapiens
RepID=RPC10_HUMAN
Length = 108
Score = 86.3 bits (212), Expect = 1e-15
Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP C N L E H R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPGCGNGLIVEEGQRCH--RFSCNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
[64][TOP]
>UniRef100_Q8JH46 DNA-directed RNA polymerase subunit n=1 Tax=Sphoeroides nephelus
RepID=Q8JH46_9PERC
Length = 108
Score = 85.9 bits (211), Expect = 2e-15
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C N+L E R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPTCGNVLIVEEGQKC--MRFACNTCPYVHNITRKVNNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WRE
Sbjct: 60 ENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRE 108
[65][TOP]
>UniRef100_Q750C6 DNA-directed RNA polymerase subunit n=1 Tax=Eremothecium gossypii
RepID=Q750C6_ASHGO
Length = 112
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP C+NML + G RL C +CPY IE GV+I ++ L RKE+D V+ +
Sbjct: 2 LSFCPYCNNMLPVSKGDSGVY-RLGCPSCPYEFPIE-GVEIYDRRNLPRKEVDDVLGGEG 59
Query: 358 M-KNAPTTEVRCPN---CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T V+CP C +KA + ++QIRSADEP T FY C+ C H+WRE+
Sbjct: 60 AWDNVDQTAVQCPQHETCGGEKAYFFQLQIRSADEPMTTFYKCVT--CGHKWREN 112
[66][TOP]
>UniRef100_Q70W34 DNA-directed RNA polymerase subunit n=1 Tax=Kluyveromyces lactis
RepID=Q70W34_KLULA
Length = 112
Score = 85.9 bits (211), Expect = 2e-15
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP C+NML + G +L C +CPY I+ G+++ ++ L RKE+D V+ +
Sbjct: 2 LSFCPLCNNMLLVSKADSGLY-KLACGSCPYQFLID-GIEVYDRKNLPRKEVDDVLGGEG 59
Query: 358 M-KNAPTTEVRCPN---CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T +CPN C+ ++A + ++QIRSADEP T FY C+N C H+WRE+
Sbjct: 60 AWDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVN--CGHKWREN 112
[67][TOP]
>UniRef100_Q9CQZ7 DNA-directed RNA polymerase III subunit RPC10 n=7 Tax=Eutheria
RepID=RPC10_MOUSE
Length = 108
Score = 85.9 bits (211), Expect = 2e-15
Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP C N L E H R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPGCGNGLIVEEGQRCH--RFACNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
[68][TOP]
>UniRef100_UPI00005828F8 DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC 2.7.7.6)
(RNA polymerase III subunit K). n=1 Tax=Bos taurus
RepID=UPI00005828F8
Length = 108
Score = 85.5 bits (210), Expect = 2e-15
Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP C N L E H R C TCPYV + + V ++ +L KE+D V+
Sbjct: 4 FCPGCGNGLIVEEGQRCH--RFACNTCPYVHNVTRKVTNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
[69][TOP]
>UniRef100_Q5FVV0 DNA-directed RNA polymerase subunit n=1 Tax=Xenopus (Silurana)
tropicalis RepID=Q5FVV0_XENTR
Length = 108
Score = 85.5 bits (210), Expect = 2e-15
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP+C N+L E + R C TCPYV + + V ++ +L KE+D V+
Sbjct: 4 FCPTCGNVLIVEEGQKCY--RFACNTCPYVHNVNRKVTSRKYPKL--KEVDDVLGGSAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108
[70][TOP]
>UniRef100_B6K8S3 DNA-directed RNA polymerase subunit n=3 Tax=Toxoplasma gondii
RepID=B6K8S3_TOXGO
Length = 106
Score = 85.5 bits (210), Expect = 2e-15
Identities = 47/110 (42%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEID-PVISYDDM 360
FCP+C NML L + C+TCPYV I++ K+ RK L K+ D P+ +
Sbjct: 4 FCPTCHNML---LVRQEVTMQFHCRTCPYVFNIKE--KLTRKMPLTPKKADEPLDESQEA 58
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
CP CSH +A + E+QIRSADEP T FY C N CR +WRE+
Sbjct: 59 ARGAKAPASCPKCSHTEAYFYEIQIRSADEPMTAFYCCCN--CRFRWREN 106
[71][TOP]
>UniRef100_UPI0000E49DF0 PREDICTED: similar to POLR3K n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E49DF0
Length = 107
Score = 85.1 bits (209), Expect = 3e-15
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YD 354
M FCP+C+N+L E R C TCPYV + + + ++ RL KE+D V+
Sbjct: 1 MLFCPTCANVLVVE--EGPKCLRFACNTCPYVHNVTRKLANRKYPRL--KEVDDVLGGAA 56
Query: 355 DMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T +CP C H +A + +MQ RSADEP T FY C ++C H+W E
Sbjct: 57 AWENVDSTAEKCPKCEHPRAYFMQMQTRSADEPMTTFYKCCYQQCGHRWNE 107
[72][TOP]
>UniRef100_UPI0000018387 UPI0000018387 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI0000018387
Length = 108
Score = 84.7 bits (208), Expect = 4e-15
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C N+L E R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPTCGNVLIVEEGQ--RCMRFACNTCPYVHNITRKVNNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAETCPKCEHRRAFFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108
[73][TOP]
>UniRef100_Q4RHC2 DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Tetraodon
nigroviridis RepID=Q4RHC2_TETNG
Length = 108
Score = 84.7 bits (208), Expect = 4e-15
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C N+L E R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPTCGNVLIVEEGQKC--MRFACNTCPYVHNITRKVNNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108
[74][TOP]
>UniRef100_Q9N4B7 DNA-directed RNA polymerase subunit n=1 Tax=Caenorhabditis elegans
RepID=Q9N4B7_CAEEL
Length = 108
Score = 84.7 bits (208), Expect = 4e-15
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP C +L+ E R C CPYVC + + V + +L K+ID V+
Sbjct: 2 LTFCPECGCVLQIESGEQC--MRFSCPACPYVCPVTQTVTSRIYPKL--KDIDDVLGGPG 57
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
NA T+ CP CSH +A + ++Q RSADEP+TIFY C + C H+W++
Sbjct: 58 AWANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWKD 108
[75][TOP]
>UniRef100_Q6DGU0 DNA-directed RNA polymerase subunit n=1 Tax=Danio rerio
RepID=Q6DGU0_DANRE
Length = 108
Score = 84.0 bits (206), Expect = 7e-15
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP+C N+L E R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPTCGNVLIVEEGQRCF--RFACNTCPYVHNITRKVNNRKYPKL--KEVDDVLGGSAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108
[76][TOP]
>UniRef100_B8K127 DNA-directed RNA polymerase subunit n=1 Tax=Oryctolagus cuniculus
RepID=B8K127_RABIT
Length = 108
Score = 84.0 bits (206), Expect = 7e-15
Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP C N L E H R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPGCGNGLIVEEGQRCH--RFACNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C + +C H+WR+
Sbjct: 60 ENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSPQCGHRWRD 108
[77][TOP]
>UniRef100_C5DU35 DNA-directed RNA polymerase subunit n=1 Tax=Zygosaccharomyces
rouxii CBS 732 RepID=C5DU35_ZYGRC
Length = 110
Score = 84.0 bits (206), Expect = 7e-15
Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP C+NML + G + L C++CPY IE G+++ +++L RKE+D V+
Sbjct: 2 LSFCPLCNNMLLIASSDSGIYT-LTCKSCPYEFPIE-GIEVYDRKKLPRKEVDDVLG-GG 58
Query: 358 MKNAPTTEVRCPN---CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T+V+CPN C+ + A + ++QIRSADEP T F+ C+N C ++W+E+
Sbjct: 59 WDNVDQTKVQCPNYDKCAGESAYFFQLQIRSADEPMTTFFKCVN--CGNRWKEN 110
[78][TOP]
>UniRef100_B5X6F8 DNA-directed RNA polymerase subunit n=1 Tax=Salmo salar
RepID=B5X6F8_SALSA
Length = 108
Score = 83.6 bits (205), Expect = 9e-15
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C N+L E + R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPTCGNVLIVEEGQKCY--RFACNTCPYVHNITRKVNNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T +CP C H +A + ++Q RSADE T FY C N +C H+WR+
Sbjct: 60 ENVDSTPEKCPKCEHPRAFFMQIQTRSADESMTTFYKCCNYECGHRWRD 108
[79][TOP]
>UniRef100_A7TL36 DNA-directed RNA polymerase subunit n=1 Tax=Vanderwaltozyma
polyspora DSM 70294 RepID=A7TL36_VANPO
Length = 110
Score = 83.6 bits (205), Expect = 9e-15
Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP C+NML + G + L C++CPY IE V+I ++ L RKEID V+
Sbjct: 2 LSFCPLCNNMLLVATSDSGIYN-LSCRSCPYEFPIEN-VEIYDRKELERKEIDDVLG-GG 58
Query: 358 MKNAPTTEVRCPN---CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T+V+CPN C+ + A + ++QIRSADEP T FY C+N C ++W+E+
Sbjct: 59 WDNVDQTKVQCPNYDNCAGESAYFFQLQIRSADEPMTTFYKCVN--CGNRWKEN 110
[80][TOP]
>UniRef100_B3MIT9 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila ananassae
RepID=B3MIT9_DROAN
Length = 342
Score = 83.2 bits (204), Expect = 1e-14
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCPSC N+L E H R C TCPY+ I++ + K RL KE+D V+
Sbjct: 4 FCPSCGNILIIEEDTSCH--RFTCNTCPYISKIKRKITAKTFPRL--KEVDHVLGGKAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEK 486
+N +T+ CP CSH +A + ++Q RSADEP T FY C N +
Sbjct: 60 ENVDSTDAECPQCSHKRAYFMQLQTRSADEPMTTFYKCCNHE 101
[81][TOP]
>UniRef100_Q6C866 DNA-directed RNA polymerase subunit n=1 Tax=Yarrowia lipolytica
RepID=Q6C866_YARLI
Length = 110
Score = 83.2 bits (204), Expect = 1e-14
Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVI---- 345
+ FCP+C+NML L G+ R C+TCPY Y++ G + ++ L +K++D V+
Sbjct: 2 LTFCPTCTNMLT--LSTSGNGMRFECRTCPYEYYLQDGTIVYDRKVLEKKKVDSVLGGEN 59
Query: 346 SYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+++++ P ++ CP CS+ A + +QIRSADEP T F C C HQWRE+
Sbjct: 60 AWENVDKDPGSQ--CPKCSNMGAYFYMLQIRSADEPMTKF--CRCTACFHQWREN 110
[82][TOP]
>UniRef100_C5DE90 DNA-directed RNA polymerase subunit n=1 Tax=Lachancea
thermotolerans CBS 6340 RepID=C5DE90_LACTC
Length = 127
Score = 82.8 bits (203), Expect = 2e-14
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+ FCP C NML + G + L C CPY IE GV++ ++ L RKE+D V+
Sbjct: 19 LSFCPHCHNMLVISQADSGAYA-LQCGACPYAFPIE-GVEVYDRKTLPRKEVDDVLG-GG 75
Query: 358 MKNAPTTEVRCPN---CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T V+CPN C ++A + ++QIRSADEP T FY C++ C ++WRE+
Sbjct: 76 WDNVDQTAVQCPNYDECGGERAYFFQLQIRSADEPMTTFYKCVS--CGNRWREN 127
[83][TOP]
>UniRef100_B3L0T6 Transcription factor, putative n=1 Tax=Plasmodium knowlesi strain H
RepID=B3L0T6_PLAKH
Length = 106
Score = 82.4 bits (202), Expect = 2e-14
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYD-DM 360
FCP+C N++ L N+ + +C+TC + I+ + K R + K I P+ + D +
Sbjct: 4 FCPNCHNIV---LVNIENGVYFYCKTCNFKYKIKNKIFNKFDCRDLNKTI-PLDAVDMNN 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
KN T+ CP C+HD+A + MQIRSADEP+T+FY C+ KC H W+E
Sbjct: 60 KNMSKTQAVCPKCTHDEAYFYSMQIRSADEPSTLFYICI--KCNHHWKE 106
[84][TOP]
>UniRef100_A8BG20 DNA-directed RNA polymerase subunit n=1 Tax=Giardia lamblia ATCC
50803 RepID=A8BG20_GIALA
Length = 105
Score = 82.4 bits (202), Expect = 2e-14
Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP C N+L EL + + +C+TC Y Y G +I R L RK +DPV+ +
Sbjct: 1 MLFCPCCGNLLLIELSG---DVQFYCKTCAYR-YTLSG-QISRSLTLTRKSVDPVLGGET 55
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ A T+ CP C+ A + +MQIRS+DEP + FY C +C HQWRED
Sbjct: 56 AWQGADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRCC--QCAHQWRED 105
[85][TOP]
>UniRef100_C7YMJ1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YMJ1_NECH7
Length = 126
Score = 82.4 bits (202), Expect = 2e-14
Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Frame = +1
Query: 175 KMEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYD 354
K+ CP C+N+L N N RL C+TCP+ +I + V +R V KE D
Sbjct: 17 KLAVCPHCANILTVSFTNTRTN-RLECRTCPFEHHITEPVFSRRMYERVEKE-DVFGGPG 74
Query: 355 DMKNAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
NA V+CPN C+ D+AA+ ++QIRSADEP T FY C+ C H+WRE+
Sbjct: 75 AWDNAQKGRVQCPNDGCNGDEAAFFQVQIRSADEPMTSFYKCMT--CGHRWREN 126
[86][TOP]
>UniRef100_Q28ZP6 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q28ZP6_DROPS
Length = 335
Score = 82.0 bits (201), Expect = 3e-14
Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCPSC N+L E H R C TCPY+ I + + K RL KE+D V+
Sbjct: 4 FCPSCGNILIIEEDTDSH--RFTCNTCPYISKITRKISTKTFPRL--KEVDHVLGGKAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLN 480
+N +T+ CP+CSH +A + ++Q RSADEP T FY C N
Sbjct: 60 ENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKCCN 99
[87][TOP]
>UniRef100_B4GGZ5 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila persimilis
RepID=B4GGZ5_DROPE
Length = 335
Score = 82.0 bits (201), Expect = 3e-14
Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCPSC N+L E H R C TCPY+ I + + K RL KE+D V+
Sbjct: 4 FCPSCGNILIIEEDTDSH--RFTCNTCPYISKITRKISTKTFPRL--KEVDHVLGGKAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLN 480
+N +T+ CP+CSH +A + ++Q RSADEP T FY C N
Sbjct: 60 ENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKCCN 99
[88][TOP]
>UniRef100_C6LXC5 DNA-directed RNA polymerase subunit n=1 Tax=Giardia intestinalis
ATCC 50581 RepID=C6LXC5_GIALA
Length = 105
Score = 81.6 bits (200), Expect = 4e-14
Identities = 47/112 (41%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP C N+L EL + + +C+TC Y Y G +I R L RK +DPV+ +
Sbjct: 1 MLFCPCCGNLLLIELAG---DVQFYCKTCSYR-YTLSG-QISRSLTLTRKSVDPVLGGET 55
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ A T CP C +A + +MQIRS+DEP + FY C +C HQWRED
Sbjct: 56 AWQGADKTHNPCPICMFPEAFWIQMQIRSSDEPMSRFYRCC--QCAHQWRED 105
[89][TOP]
>UniRef100_B3S471 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S471_TRIAD
Length = 106
Score = 81.3 bits (199), Expect = 5e-14
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP+C+N L E G C TCPY+ + K + + +L K++D ++
Sbjct: 4 FCPNCANALYME--KQGECLVFLCHTCPYLYKVTKTIASRNYPKL--KQVDDILGGKAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +TE CP C H++A + ++Q RSADEP T+FY C + C H+W++
Sbjct: 60 ENVDSTEATCPKCDHNQAFFMQIQTRSADEPMTVFYKCCS--CGHRWKD 106
[90][TOP]
>UniRef100_C3KJD5 DNA-directed RNA polymerase subunit n=1 Tax=Anoplopoma fimbria
RepID=C3KJD5_9PERC
Length = 108
Score = 80.9 bits (198), Expect = 6e-14
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C N+L E R C TCPYV I + V ++ +L KE+D V+
Sbjct: 4 FCPTCGNVLIVEEGQKC--MRFACNTCPYVHNITRKVNNRKYPKL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q RSADEP T FY C + C H+WR+
Sbjct: 60 ENVDSTPETCPKCGHLRAYFMQIQTRSADEPMTTFYKCCSAPCGHRWRD 108
[91][TOP]
>UniRef100_Q2KF11 DNA-directed RNA polymerase subunit n=2 Tax=Magnaporthe grisea
RepID=Q2KF11_MAGGR
Length = 110
Score = 80.9 bits (198), Expect = 6e-14
Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCPSC+N+L G N RL C+TCPY I + + RK+ RKE + V
Sbjct: 4 FCPSCANVLTVSAMETGKN-RLECRTCPYEFAINEPL-FSRKE-FARKEREDVFGGPGAW 60
Query: 361 KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
NA V+CP NC ++AA+ ++QIRSADEP T FY C+ C H+WRE+
Sbjct: 61 DNAQKGRVQCPADNCDGEEAAFFQVQIRSADEPMTSFYKCMT--CGHRWREN 110
[92][TOP]
>UniRef100_Q2M2S7 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Bos taurus
RepID=RPC10_BOVIN
Length = 108
Score = 80.9 bits (198), Expect = 6e-14
Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP C N L E H R C TCPYV + + V ++ +L KE+D +
Sbjct: 4 FCPGCGNGLIVEEGQRCH--RFACNTCPYVHNVTRKVTNRKYPKL--KEVDDELGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T CP C H +A + ++Q R ADEP T FY C N +C H+WR+
Sbjct: 60 ENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108
[93][TOP]
>UniRef100_Q2H571 DNA-directed RNA polymerase subunit n=1 Tax=Chaetomium globosum
RepID=Q2H571_CHAGB
Length = 111
Score = 80.5 bits (197), Expect = 8e-14
Identities = 48/112 (42%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP C+N+L + G N RL C+TCPY IE + I ++ RKE + V
Sbjct: 5 FCPYCANLLILSRMDTGGN-RLECRTCPYQHAIE--MPIYSRKNFPRKEKEDVFGGPGAW 61
Query: 361 KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
NA V+CP +C+ D+AA+ ++QIRSADEP T FY C+ C H+WRE+
Sbjct: 62 DNAQKGRVQCPTPDCNGDEAAFFQVQIRSADEPMTTFYKCMT--CGHRWREN 111
[94][TOP]
>UniRef100_C5U6A7 Transcription termination factor Tfs n=1 Tax=Methanocaldococcus
infernus ME RepID=C5U6A7_9EURY
Length = 104
Score = 80.5 bits (197), Expect = 8e-14
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVK--IKRKQRLVRKEIDPVISY 351
++FCP C+N+L LP+ G +L C C Y E+G K + K++L RKE VI
Sbjct: 2 VKFCPKCNNVL---LPSEG---KLKCPVCGYT---EEGEKEGYEYKEKLKRKEEIAVIEG 52
Query: 352 DDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
++++ PT ++ CP C H +A + Q R ADEP T FY C +KC H WRE
Sbjct: 53 NEIETLPTIKIECPKCGHTEAYWWLQQTRCADEPETRFYRC--KKCGHTWRE 102
[95][TOP]
>UniRef100_B6AHL8 DNA-directed RNA polymerase III subunit RPC10, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AHL8_9CRYT
Length = 106
Score = 80.1 bits (196), Expect = 1e-13
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
++FCP C N+L + + LFCQTCP++ + K +I + L K+ P + D
Sbjct: 2 VQFCPHCHNILLIR--EIDERTALFCQTCPFIQKLNK--QIVKVTELTPKK--PEEAQGD 55
Query: 358 MKNAPTTEVR--CPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
M + +V CP CS+ +A + ++QIRSADEP T FY C+ KC H+W+E+
Sbjct: 56 MNEIASAKVMAVCPKCSNTEAYFFQLQIRSADEPMTSFYTCV--KCEHKWKEN 106
[96][TOP]
>UniRef100_A9UWA6 DNA-directed RNA polymerase subunit n=1 Tax=Monosiga brevicollis
RepID=A9UWA6_MONBE
Length = 109
Score = 80.1 bits (196), Expect = 1e-13
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP C NML + + H C TCPY + + R+ + D + D
Sbjct: 1 MIFCPLCGNMLIMQ--SSLHGYFFGCNTCPYKHELGEHRVTARRSMHHDERADEIYGGDS 58
Query: 358 MKNA-PTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
K TE CP C H++A+Y + Q RSADEP+T+FY C EKC H+W +
Sbjct: 59 AKEMMDMTEADCPKCHHNRASYVQQQTRSADEPSTVFYCC--EKCNHKWND 107
[97][TOP]
>UniRef100_B5Y459 RNA polymerase C subunit 11 kDa n=1 Tax=Phaeodactylum tricornutum
CCAP 1055/1 RepID=B5Y459_PHATR
Length = 111
Score = 79.7 bits (195), Expect = 1e-13
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPN---MGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS 348
M FCP +L+ ++ + NS +C TCPY C I+ +K + RK +D ++
Sbjct: 1 MWFCPLDGTLLQVQIRSGAVPAENSFFYCSTCPYSCSIDAPRTVKTPTK--RKVVDDILG 58
Query: 349 -YDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N T CP C+H++A + +MQIRSADEP +IFY C+ +C HQW +
Sbjct: 59 GAAAWENVDRTMAVCPACNHNEAYFMQMQIRSADEPMSIFYKCV--QCSHQWND 110
[98][TOP]
>UniRef100_C1BS50 DNA-directed RNA polymerase III subunit RPC10 n=1
Tax=Lepeophtheirus salmonis RepID=C1BS50_9MAXI
Length = 108
Score = 79.3 bits (194), Expect = 2e-13
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP+C N+L R C+TCPY + + + +L KE+D V+
Sbjct: 4 FCPNCGNILGVVEGVTDSCMRFACETCPYKRNVVSRLSDRVYPKL--KEVDDVLGGSAAW 61
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +TE CPNC H +A + ++Q RSADEP T FY C++ C H+WRE
Sbjct: 62 ENVDSTEETCPNCDHHRAYFMQIQTRSADEPMTTFYKCVS--CGHRWRE 108
[99][TOP]
>UniRef100_C4V7E3 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4V7E3_NOSCE
Length = 105
Score = 79.0 bits (193), Expect = 2e-13
Identities = 41/111 (36%), Positives = 60/111 (54%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP C+N+L + N+ + C TCPY I + ++ +D V+ D+
Sbjct: 1 MFFCPLCTNILAIDKLNI--QTAFICNTCPYQYKINMVFNKSARNNVIA--VDKVLGEDE 56
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
K A T E +C C +KA + E+Q RSADEP TIFY C+ C+ W+E+
Sbjct: 57 YKYASTCEKKCIKCDSNKALFMELQTRSADEPMTIFYECV--LCKTNWKEN 105
[100][TOP]
>UniRef100_UPI0000D554AC PREDICTED: similar to POLR3K n=1 Tax=Tribolium castaneum
RepID=UPI0000D554AC
Length = 108
Score = 78.6 bits (192), Expect = 3e-13
Identities = 45/109 (41%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP C N+L F G C+ CP V + +G KI + K +D V+ +D
Sbjct: 4 FCPFCGNLL-FAQQTCGRLG-FACRICP-VSFPIRG-KISNRTYFQVKSVDDVLGGEDAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
KN T CP CSH A + ++Q RSADEP T FY C N +C H WRE
Sbjct: 60 KNCDVTAETCPECSHPHAYFLQVQTRSADEPMTNFYRCCNPECAHNWRE 108
[101][TOP]
>UniRef100_Q0U901 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0U901_PHANO
Length = 118
Score = 78.6 bits (192), Expect = 3e-13
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Frame = +1
Query: 184 FCPSCSNMLKF-ELP--------NMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEID 336
FCP+CSN+L+ ++P N+G N R C TCPY I K + ++ + +KE++
Sbjct: 4 FCPTCSNVLRVSKVPPGDPNTEMNVGEN-RFECLTCPYQFVINK--RYFERKYMKKKEVE 60
Query: 337 PVISYDDM-KNAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
++ N T+V+CPN C +D+A + ++QIRSADEP T FY C KC +WRE
Sbjct: 61 DILGGKGAWDNVDKTQVQCPNEKCRNDEAYWYQLQIRSADEPMTAFYKC--TKCAKEWRE 118
[102][TOP]
>UniRef100_Q54K02 RNA polymerase III subunit n=1 Tax=Dictyostelium discoideum
RepID=Q54K02_DICDI
Length = 111
Score = 78.2 bits (191), Expect = 4e-13
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVI--SY 351
M FCP C+NML + P++ ++R FCQTCPY+ +I+ K+ K L RK ID +
Sbjct: 1 MLFCPLCANMLLID-PDL-QDTRYFCQTCPYIFHIKN--KVVTKVPLQRKIIDSDVFGGE 56
Query: 352 DDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ K+A EV C C + +A+ E+Q+ +P T +Y C N C +QW++
Sbjct: 57 EAWKSADVVEVECQVCRYRRASLIEIQVDPIGQPKTSYYRCKNPGCENQWQK 108
[103][TOP]
>UniRef100_O13896 DNA-directed RNA polymerase III subunit RPC10 n=1
Tax=Schizosaccharomyces pombe RepID=RPC10_SCHPO
Length = 109
Score = 78.2 bits (191), Expect = 4e-13
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M+FCP+C N L + G N+ C+TCPY + + + +KE+D V+ ++
Sbjct: 1 MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY--HFPISTFLYSRHEFAQKEVDDVLGGEE 57
Query: 358 -MKNAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
++ TEV C N C +++A + ++QIRSADEP + FY C KC+ QWRE+
Sbjct: 58 AFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRC--TKCKFQWREN 109
[104][TOP]
>UniRef100_Q4YPC3 Transcription factor, putative n=1 Tax=Plasmodium berghei
RepID=Q4YPC3_PLABE
Length = 106
Score = 77.8 bits (190), Expect = 5e-13
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYD-DM 360
FCP+C N++ + N + L+C+TC + I+ + K + K I P+ + D +
Sbjct: 4 FCPNCHNIVLVHVENGVY---LYCKTCNFKYKIKNKIYNKYDCKEFNKTI-PLDAVDMNN 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
KN T+ CP C+HD+A + +QIRSADEP+T+FY C+N C + W+E
Sbjct: 60 KNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICVN--CNYHWKE 106
[105][TOP]
>UniRef100_C4R616 DNA-directed RNA polymerase subunit n=1 Tax=Pichia pastoris GS115
RepID=C4R616_PICPG
Length = 111
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C NML N R C TCPY I G+++ ++ L RK++D V+
Sbjct: 4 FCPNCQNMLTVTKAADSIN-RFNCPTCPYEFPIV-GMQMYERKDLSRKQVDDVLGGAGAW 61
Query: 361 KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
N T +CP +C DKA + ++QIRSADEP T F C KC HQWRE+
Sbjct: 62 DNVDQTGAQCPIDSCGGDKAYFFQLQIRSADEPMTTFLKCC--KCGHQWREN 111
[106][TOP]
>UniRef100_A5KBL4 Transcription factor, putative n=1 Tax=Plasmodium vivax
RepID=A5KBL4_PLAVI
Length = 106
Score = 77.0 bits (188), Expect = 9e-13
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYD-DM 360
FCP+C N++ + N + +C+TC + I + K + K I P+ + D +
Sbjct: 4 FCPNCHNIVLVHVENGVY---FYCKTCNFKYKIRNKIFNKFDCKEYNKTI-PLDAVDVNN 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
KN T+ CP C+HD+A + +QIRSADEP+T+FY C+ KC H W+E
Sbjct: 60 KNMSKTQAVCPKCTHDEAYFYSLQIRSADEPSTLFYICV--KCNHHWKE 106
[107][TOP]
>UniRef100_Q4Y0E1 Putative uncharacterized protein n=1 Tax=Plasmodium chabaudi
RepID=Q4Y0E1_PLACH
Length = 106
Score = 76.6 bits (187), Expect = 1e-12
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYD-DM 360
FCP+C N++ + N + L+C+TC + I+ + K K I P+ + D +
Sbjct: 4 FCPNCHNIVLVHVENGVY---LYCKTCNFKYKIKNKIYNKYDCTEFNKTI-PLDAVDMNN 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
KN T+ CP C+HD+A + +QIRSADEP+T+FY C+N C + W+E
Sbjct: 60 KNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICVN--CNYHWKE 106
[108][TOP]
>UniRef100_B4HQM8 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila sechellia
RepID=B4HQM8_DROSE
Length = 325
Score = 76.6 bits (187), Expect = 1e-12
Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCPSC N+L E H R C TCPY+ I + + K RL KE+D V+
Sbjct: 4 FCPSCGNILIIEEDTNCH--RFTCNTCPYISKIRRKISTKTFPRL--KEVDHVLGGKAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+N +T+ CP C H +A + ++Q RSADEP T FY + +HQ E
Sbjct: 60 ENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFY----NRMQHQASE 104
[109][TOP]
>UniRef100_Q4TTY9 DNA-dependent RNA polymerase subunit M n=1 Tax=Thermococcus
thioreducens RepID=Q4TTY9_9EURY
Length = 110
Score = 76.3 bits (186), Expect = 2e-12
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP------ 339
M+FCP C N++ LP+ + C++C Y ++ K R++ +++++++
Sbjct: 1 MKFCPKCGNLM---LPDRKKKVWV-CRSCGYEEPFDE--KKDREKTVIKQKVEHKPDEGI 54
Query: 340 VISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
++ D+K PTT++ CP C +D A + EMQ R+ DEP+TIFY C KC H WR
Sbjct: 55 IVVEQDVKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYRC--TKCGHTWR 107
[110][TOP]
>UniRef100_Q56254 DNA-directed RNA polymerase subunit M n=1 Tax=Thermococcus celer
RepID=RPOM_THECE
Length = 110
Score = 76.3 bits (186), Expect = 2e-12
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP------ 339
M+FCP C N++ LP+ + C++C Y ++ + R++ ++++E+
Sbjct: 1 MKFCPKCGNLM---LPDRKRKVWV-CRSCGYEEPFDE--EKDREKTVIKQEVKHKPDEGI 54
Query: 340 VISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
V+ D+K PTT++ CP C +D A + EMQ R+ DEP+TIFY C KC H WR
Sbjct: 55 VVIEQDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKC--TKCGHTWR 107
[111][TOP]
>UniRef100_B2ATA0 DNA-directed RNA polymerase subunit n=1 Tax=Podospora anserina
RepID=B2ATA0_PODAN
Length = 111
Score = 75.5 bits (184), Expect = 3e-12
Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCP C+NML + G N R+ C+TCPY IEK ++ V KE D D
Sbjct: 5 FCPYCANMLILSRMDTGGN-RVECRTCPYQHAIEKPYYSRKVFPKVEKE-DLFGGPDAWA 62
Query: 364 NAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
NA +V+C + CS +AA+ ++QIRSADEP T FY CL C WRE+
Sbjct: 63 NAQKQKVQCSSAECSGGEAAFFQVQIRSADEPMTTFYRCLT--CGKNWREN 111
[112][TOP]
>UniRef100_A2EBM6 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis G3
RepID=A2EBM6_TRIVA
Length = 109
Score = 75.1 bits (183), Expect = 3e-12
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVC-YIEKGVKIKRKQRLVRKEIDPVISYDD- 357
FCP+C N+L + G ++L C+ C +V ++ + V+ L ++ +I+ DD
Sbjct: 6 FCPACGNLLLVD--TSGDRTQLKCRACNFVMGFVGRTVQSAPLNPL---DVKALITNDDA 60
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
M T+ RC C H++A +TE+QIRSADEPAT+F+ C KC + WRE
Sbjct: 61 MSFQNKTQARCDKCGHNEAFFTEIQIRSADEPATLFFKCC--KCGNTWRE 108
[113][TOP]
>UniRef100_Q6MUM9 DNA-directed RNA polymerase subunit n=1 Tax=Neurospora crassa
RepID=Q6MUM9_NEUCR
Length = 112
Score = 75.1 bits (183), Expect = 3e-12
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP C+N+L + G N RL C+TCPY I+K I ++ RKE + V
Sbjct: 5 FCPFCANLLILSRADTGGN-RLECRTCPYEHPIDK--PIYSRKNFPRKEKEDVFGGPGAW 61
Query: 361 KNAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
NA +V+C + C+ ++AA+ ++QIRSADEP T FY C+ C H+WR++
Sbjct: 62 DNAQKGKVQCDSGTCNGNEAAFFQVQIRSADEPMTTFYKCMT--CGHRWRDN 111
[114][TOP]
>UniRef100_Q4P5F3 DNA-directed RNA polymerase subunit n=1 Tax=Ustilago maydis
RepID=Q4P5F3_USTMA
Length = 111
Score = 74.7 bits (182), Expect = 4e-12
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP+C+N L +L + G+N + C TCPY I + ++ +Q L RK++D V+ ++
Sbjct: 1 MLFCPTCANCLIIQLDDHGNN-KWSCHTCPYEFPIVR--QMTTRQHLKRKQVDDVMGGEE 57
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPA 456
KN +T+ CP C + KA + ++QIRSADEP+
Sbjct: 58 SWKNVDSTDAPCPKCENPKAFFMQLQIRSADEPS 91
[115][TOP]
>UniRef100_Q5JF34 Archaeal transcription factor S n=1 Tax=Thermococcus kodakarensis
RepID=Q5JF34_PYRKO
Length = 110
Score = 74.7 bits (182), Expect = 4e-12
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRK-----EIDPV 342
M+FCP C N++ LP+ + C++C Y ++ K + K ++ +K + + +
Sbjct: 1 MKFCPKCGNLM---LPDRKRKVWV-CRSCGYEEPFDEE-KDREKTKITKKVEHKPDEEII 55
Query: 343 ISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
+ D+K PTT+V CP C +D A + EMQ R+ DEP+TIFY C KC + WR
Sbjct: 56 VVEQDLKTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKC--TKCGYTWR 107
[116][TOP]
>UniRef100_Q15ES4 DNA-directed RNA polymerase , putative n=1 Tax=Schistosoma mansoni
RepID=Q15ES4_SCHMA
Length = 115
Score = 74.3 bits (181), Expect = 6e-12
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRL---VRKEIDPVISYD 354
FCP C ++L E ++ C Y ++ + + ++ K R +R E D V S +
Sbjct: 5 FCPLCHSLLMIEESAHCYSLNCSAPICSYRWFVTQPLVLEHKPRQDVRLRLEEDAVFSVE 64
Query: 355 D-MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D ++ T+ +CP CSH +A + +MQ RSADEP+TI Y C+ KC H W E
Sbjct: 65 DEYSSSAQTDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCI--KCHHIWTE 114
[117][TOP]
>UniRef100_Q6FRH9 DNA-directed RNA polymerase subunit n=1 Tax=Candida glabrata
RepID=Q6FRH9_CANGA
Length = 100
Score = 74.3 bits (181), Expect = 6e-12
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Frame = +1
Query: 247 LFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMKNAPTTEVRCPN---CSHDKAA 417
L C++CPY IE ++I +++L RKE+D V+ N T+V+CPN C + A
Sbjct: 14 LSCRSCPYEFPIES-IEIYDRKKLPRKEVDDVLG-GGWDNVDQTKVQCPNYDTCGGESAY 71
Query: 418 YTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ ++QIRSADEP T FY C+N C H+W+E+
Sbjct: 72 FFQLQIRSADEPMTTFYKCVN--CAHRWKEN 100
[118][TOP]
>UniRef100_A6UTI3 Transcription termination factor Tfs n=1 Tax=Methanococcus aeolicus
Nankai-3 RepID=A6UTI3_META3
Length = 103
Score = 73.9 bits (180), Expect = 7e-12
Identities = 39/110 (35%), Positives = 58/110 (52%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
++FCP C+N++ LP L C C + +EK + K++L K+ ++ +D
Sbjct: 2 VKFCPKCNNIM---LPK---EDNLVCTVCGFEEELEKTESYELKEKLETKQ--EIVVIED 53
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ PTT + CPNC + + + Q R ADEP T FY C KC H WRE
Sbjct: 54 VNTLPTTRIECPNCGNMEVYWWLQQTRCADEPETRFYKC--TKCGHTWRE 101
[119][TOP]
>UniRef100_UPI000023DFAF hypothetical protein FG08551.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023DFAF
Length = 110
Score = 73.6 bits (179), Expect = 1e-11
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCP C+N+L L + N RL C+TCP+ +I + V +R V +E D
Sbjct: 4 FCPHCANILTVSLTSTRTN-RLECRTCPFEHHITEPVFSRRLYERVERE-DVFGGPGAWD 61
Query: 364 NAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
NA +CP C ++AA+ ++QIRSADEP T F+ C++ C H+WRE+
Sbjct: 62 NAQKGPAQCPADGCDGEEAAFFQVQIRSADEPMTSFFKCMS--CGHRWREN 110
[120][TOP]
>UniRef100_C5A5N8 Transcription elongation factor S (TFS_arch) n=1 Tax=Thermococcus
gammatolerans EJ3 RepID=C5A5N8_THEGJ
Length = 110
Score = 73.6 bits (179), Expect = 1e-11
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRK-EIDP----V 342
M+FCP C N++ LP+ + C++C Y ++ K + K R+ +K E P +
Sbjct: 1 MKFCPKCGNLM---LPDRKRKVWV-CRSCGYEEPFDEE-KDREKTRITQKVEHKPDEGII 55
Query: 343 ISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
+ D+K PTT+V CP C +D A + E+Q R+ DEP+TIFY C KC + WR
Sbjct: 56 VVEQDLKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKC--TKCGYVWR 107
[121][TOP]
>UniRef100_C1V997 DNA-directed RNA polymerase, subunit M n=1 Tax=Halogeometricum
borinquense DSM 11551 RepID=C1V997_9EURY
Length = 107
Score = 73.6 bits (179), Expect = 1e-11
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVR------KEIDP 339
MEFC C +M+K + C +C + EK ++ + EI
Sbjct: 1 MEFCDECGSMMKTD------GGVWVCGSCGF----EKARDAAQESHMTSTASREDSEIVD 50
Query: 340 VISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ DD + PTT V+CP C HD+A Y QIRSADE T F+ C+ +C H+WRED
Sbjct: 51 MSDVDDAEIGPTTTVKCPECGHDRARYEMKQIRSADESETRFFTCV--ECSHKWRED 105
[122][TOP]
>UniRef100_Q58548 DNA-directed RNA polymerase subunit M n=1 Tax=Methanocaldococcus
jannaschii RepID=RPOM_METJA
Length = 108
Score = 73.6 bits (179), Expect = 1e-11
Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYV--CYIEKGVKIKRKQRLV-RKEIDPVIS 348
++FCP C+N++ LP G +L C C Y E + + K+ L +KE VI
Sbjct: 2 VKFCPKCNNLM---LPKDG---KLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIE 55
Query: 349 YDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ ++ PTT + CP C H++A + Q R ADEP T FY C +KC H WRE
Sbjct: 56 SEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106
[123][TOP]
>UniRef100_Q5DC18 SJCHGC03725 protein n=1 Tax=Schistosoma japonicum
RepID=Q5DC18_SCHJA
Length = 115
Score = 73.2 bits (178), Expect = 1e-11
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRL---VRKEIDPVISYD 354
FCP+C ++L E ++ C Y ++ + + ++ K R +R E D V S +
Sbjct: 5 FCPNCHSLLMIEESAHCYSLNCSAPMCSYRWFVTQPLVLEHKPRQDIRLRLEEDAVFSVE 64
Query: 355 D-MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D ++ + +CP CSH +A + +MQ RSADEP+TI Y C+ KC H W E
Sbjct: 65 DEYSSSAQIDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCM--KCHHIWTE 114
[124][TOP]
>UniRef100_C5L7A3 DNA-directed RNA polymerase subunit n=1 Tax=Perkinsus marinus ATCC
50983 RepID=C5L7A3_9ALVE
Length = 327
Score = 73.2 bits (178), Expect = 1e-11
Identities = 44/113 (38%), Positives = 69/113 (61%), Gaps = 4/113 (3%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNS-RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM 360
FCP+C N+L + GH++ + +C+TCPY+ I + K+ +K+ ++ KE++ V+ D
Sbjct: 6 FCPTCGNLLVLQA---GHDTMKYWCRTCPYLFPISE--KLTQKE-ILHKEVEDVLGGPDA 59
Query: 361 -KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
K+ TE CP C ++A + +MQIRSADEP T FY C+ K + Q R D
Sbjct: 60 WKDVQQTEAVCPADGCDSNRAYFKQMQIRSADEPMTTFYRCV--KSQEQTRVD 110
[125][TOP]
>UniRef100_C7P7U4 Transcription termination factor Tfs n=1 Tax=Methanocaldococcus
fervens AG86 RepID=C7P7U4_METFA
Length = 108
Score = 72.8 bits (177), Expect = 2e-11
Identities = 45/113 (39%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYV--CYIEKGVKIKRKQRLV-RKEIDPVIS 348
++FCP C N++ LP G +L C C Y E + + K+ L RKE VI
Sbjct: 2 VKFCPKCKNLM---LPKDG---KLKCVVCGYEEETGSEGSKEYEYKEHLENRKEKITVIE 55
Query: 349 YDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ ++ PTT V CP C H++A + Q R ADEP T FY C +KC H WRE
Sbjct: 56 GEGVETLPTTRVECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106
[126][TOP]
>UniRef100_B7R0T6 Transcription factor S n=1 Tax=Thermococcus sp. AM4
RepID=B7R0T6_9EURY
Length = 110
Score = 72.8 bits (177), Expect = 2e-11
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRK-EIDP----V 342
M+FCP C N++ LP+ + C++C Y ++ K + K R+ +K E P +
Sbjct: 1 MKFCPKCGNLM---LPDRKRKVWV-CRSCGYEEPFDEE-KDREKTRITQKVEHRPDEGII 55
Query: 343 ISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
+ D+K PTT+V CP C +D A + E+Q R+ DEP+TIFY C KC + WR
Sbjct: 56 VVEQDVKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKC--TKCGYVWR 107
[127][TOP]
>UniRef100_O96159 Transcription factor, putative n=1 Tax=Plasmodium falciparum 3D7
RepID=O96159_PLAF7
Length = 106
Score = 72.4 bits (176), Expect = 2e-11
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYD-DM 360
FCP+C N++ L ++ +C++C Y I+ + K + K I P+ + D +
Sbjct: 4 FCPNCHNIV---LVHIEKGVYFYCKSCNYKYKIKNKIYNKFDCQQFNKTI-PLDAVDINN 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
KN T+ CP C++D+A + +QIRSADEP+TIFY C+ KC + W+E
Sbjct: 60 KNMSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYICV--KCNYHWKE 106
[128][TOP]
>UniRef100_C5K7H8 DNA-directed RNA polymerase subunit n=1 Tax=Perkinsus marinus ATCC
50983 RepID=C5K7H8_9ALVE
Length = 594
Score = 72.4 bits (176), Expect = 2e-11
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNS-RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM 360
FCP+C N+L + GH++ + +C+TCPY+ I + K+ +K+ L ++ ++ V+ D
Sbjct: 362 FCPTCGNLLVLQA---GHDTMKYWCRTCPYLFPISE--KLTQKEILHKEVVEDVLGGPDA 416
Query: 361 -KNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED*LHSYAM 531
K+ TE CP C ++A + +MQIRSADEP T FY C+ + H E + M
Sbjct: 417 WKDVQQTEAVCPADGCDSNRAYFKQMQIRSADEPMTTFYRCVKSQ-EHARAEGAVCGPEM 475
Query: 532 YYFIV 546
Y+ +V
Sbjct: 476 YHKVV 480
[129][TOP]
>UniRef100_C0NUV3 DNA-directed RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus
RepID=C0NUV3_AJECG
Length = 117
Score = 72.4 bits (176), Expect = 2e-11
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPN------MGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP 339
+ FCP+CSN L + +G N R C+TCPY +++ + + RKE+
Sbjct: 3 LTFCPNCSNALTISRADPSPRYPLGVN-RFECRTCPYQYILDR--TYYERTEMKRKEVSD 59
Query: 340 VIS-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
V+ D+ KNA + +CP C D+A + ++QIRSADEP T F+ C C +WRE+
Sbjct: 60 VLGGKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFFKCTT--CGARWREN 117
[130][TOP]
>UniRef100_C9RF97 Transcription termination factor Tfs n=1 Tax=Methanocaldococcus
vulcanius M7 RepID=C9RF97_9EURY
Length = 107
Score = 72.4 bits (176), Expect = 2e-11
Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPY---VCYIEKGVKIKRKQRLVRKEIDPVIS 348
++FCP C N++ LP G +L C C Y + + K +KEI VI
Sbjct: 2 VKFCPKCKNLM---LPKDG---KLKCAVCGYEEETAEVSNEYEYKEHLEPKKKEIT-VIE 54
Query: 349 YDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ ++ PTT + CP C H +A + Q R ADEP T FY C +KC H WRE
Sbjct: 55 DEGLETLPTTRIECPKCGHTEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 105
[131][TOP]
>UniRef100_UPI000187D2C9 hypothetical protein MPER_04676 n=1 Tax=Moniliophthora perniciosa
FA553 RepID=UPI000187D2C9
Length = 92
Score = 71.6 bits (174), Expect = 4e-11
Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP+C+N+L G N + C TCPY I K + K L RKE+D V+ D+
Sbjct: 1 MLFCPTCANLLVVS-SETGFN-KWACNTCPYEFPITKQARSSTK--LKRKEVDDVLGGDE 56
Query: 358 M-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPAT 459
M K+A +T CP C++ +A + ++QIRSADEP T
Sbjct: 57 MWKHADSTAASCPRCNNGQAYFYQLQIRSADEPMT 91
[132][TOP]
>UniRef100_B8NLF0 DNA-directed RNA polymerase subunit n=2 Tax=Aspergillus
RepID=B8NLF0_ASPFN
Length = 117
Score = 71.6 bits (174), Expect = 4e-11
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Frame = +1
Query: 178 MEFCPSCSNMLKFEL--PNMGHN---SRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPV 342
+ FCP+CSN L P H +R C+TCPY +E+ K + + +KE++ V
Sbjct: 3 LTFCPNCSNALTISRADPTPRHPLGVNRFECRTCPYQYVLEQSYFEKTEMK--QKEVEDV 60
Query: 343 IS-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
++ NA + +CP NC+ D+A + ++QIRSADEP T F C + C +WRE+
Sbjct: 61 FGGKEEFANADSMATQCPAENCNGDRAYFFQLQIRSADEPMTTFLKCTS--CGARWREN 117
[133][TOP]
>UniRef100_Q9P9I8 Archaeal transcription factor S n=1 Tax=Methanothermococcus
thermolithotrophicus RepID=Q9P9I8_METTL
Length = 105
Score = 71.6 bits (174), Expect = 4e-11
Identities = 38/110 (34%), Positives = 57/110 (51%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+EFCP C+N++ LP N RL C C + + + + + + V +D
Sbjct: 2 VEFCPKCNNIM---LPK---NGRLKCTVCGFEEELGNRTEEYELKEKIEAKKQEVTVIED 55
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ PTT + CP+C + +A++ Q R ADEP T FY C +KC H WRE
Sbjct: 56 VDTLPTTRIECPSCGNMEASWWLQQTRCADEPETRFYKC--KKCGHTWRE 103
[134][TOP]
>UniRef100_UPI0000EB34E7 DNA-directed RNA polymerase III subunit RPC10 (RNA polymerase III
subunit C10) (DNA-directed RNA polymerase III subunit K)
(RNA polymerase III subunit C11) (RPC11) (HsC11p)
(hRPC11) (DNA-directed RNA polymerases III 12.5 kDa
polypeptide). n=1 Tax=Canis lupus familiaris
RepID=UPI0000EB34E7
Length = 109
Score = 70.9 bits (172), Expect = 6e-11
Identities = 43/107 (40%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP C N L E H R C TCPYV I + V RK + KE+D V+
Sbjct: 4 FCPGCGNGLIVEEGQRCH--RFACNTCPYVHNITRKVVTNRKYPKL-KEVDDVLGGAAAW 60
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQW 501
+N +T CP C H +A + ++Q RSADEP T FY K H W
Sbjct: 61 ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFY-----KSCHSW 102
[135][TOP]
>UniRef100_C5FE71 DNA-directed RNA polymerase subunit n=1 Tax=Microsporum canis CBS
113480 RepID=C5FE71_NANOT
Length = 117
Score = 70.9 bits (172), Expect = 6e-11
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Frame = +1
Query: 178 MEFCPSCSNMLKFEL--PNMGHNS---RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPV 342
+ FCP+CSN L P + + R C+TCPY +++ + + RKE+ V
Sbjct: 3 LTFCPNCSNALTISKAPPTSRYPAGVNRFECRTCPYQYALDR--TYYERTEMKRKEVADV 60
Query: 343 IS-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ D+ KNA + +CP C D+A + ++QIRSADEP T FY C C +WRE+
Sbjct: 61 MGGKDEWKNADSMPAQCPAEGCEGDRAFFYQLQIRSADEPMTTFYKC--SVCGTRWREN 117
[136][TOP]
>UniRef100_B6K2W2 DNA-directed RNA polymerase subunit n=1 Tax=Schizosaccharomyces
japonicus yFS275 RepID=B6K2W2_SCHJY
Length = 109
Score = 70.9 bits (172), Expect = 6e-11
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M+FCP+C N L + G N+ C+TCPY I + + + +K++D V+ +
Sbjct: 1 MQFCPTCGNHLIVSVDENGTNT-FDCRTCPYRFPIS--ILMYHRHEFAQKQVDDVLGGKE 57
Query: 358 M-KNAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
++ T++ C N C + +A + ++QIRSADEP + FY C +C +QWRE+
Sbjct: 58 AWESNQQTDIPCENKNCDNRRAYFFQLQIRSADEPMSTFYRC--TECGYQWREN 109
[137][TOP]
>UniRef100_C9SAW1 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Verticillium
albo-atrum VaMs.102 RepID=C9SAW1_9PEZI
Length = 110
Score = 70.1 bits (170), Expect = 1e-10
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYD-DM 360
FCP+C+N+L N RL C+TCP+ I + +R+ RKE + V +
Sbjct: 4 FCPNCANILTVSAVGSVRN-RLECRTCPFEHPITAPIYSRRE--FERKEREDVFGGPGEW 60
Query: 361 KNAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
NA +CP C+ D+AA+ ++QIRSADEP T F+ C+ C ++WRE+
Sbjct: 61 DNADKARAQCPKEGCNGDEAAFFQVQIRSADEPMTTFFKCM--ACGNRWREN 110
[138][TOP]
>UniRef100_C6A1Y3 DNA-directed RNA polymerase subunit m n=1 Tax=Thermococcus
sibiricus MM 739 RepID=C6A1Y3_THESM
Length = 108
Score = 70.1 bits (170), Expect = 1e-10
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYV--CYIEKGVKIKRKQRLVRKEIDPVISY 351
M+FCP C N++ LP+ C+ C Y +E K K Q++ D +
Sbjct: 1 MKFCPKCGNIM---LPDKKRGV-FVCRKCGYEEPLDLETASKYKITQKIKHDREDIPVIE 56
Query: 352 DDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
D+ P ++ CP C +D+A + E+Q R+ DEP+TIFY C KC + WR
Sbjct: 57 QDVATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYRC--TKCGYTWR 105
[139][TOP]
>UniRef100_A6UQ74 Transcription termination factor Tfs n=1 Tax=Methanococcus
vannielii SB RepID=A6UQ74_METVS
Length = 105
Score = 70.1 bits (170), Expect = 1e-10
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPY---VCYIEKGVKIKRKQRLVRKEIDPVIS 348
+EFCP C+N++ LP N +L C C + + K ++K K ++E+ + +
Sbjct: 2 VEFCPKCNNIM---LPK---NGKLKCVVCKHEEDIGDANKSYELKEKIETKKQEVTVIEN 55
Query: 349 YDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D M P T + CP+C + +A + Q R ADEP T FY C +KC H WRE
Sbjct: 56 IDTM---PITRIECPSCGNMEAFWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
[140][TOP]
>UniRef100_A5UMY1 DNA-directed RNA polymerase subunit M, RpoM n=2
Tax=Methanobrevibacter smithii RepID=A5UMY1_METS3
Length = 104
Score = 70.1 bits (170), Expect = 1e-10
Identities = 40/110 (36%), Positives = 56/110 (50%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP C +ML LP ++ L C +C Y + K +++ + +D
Sbjct: 1 MEFCPECGSML---LPT--EDNELKC-SCGYTKKLSKDKSEYNVNEKIKENDSVIEKGED 54
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ PTT+ CP C H +A++ Q RSADE T F+ CL KC H WRE
Sbjct: 55 VNTLPTTKAVCPECGHTEASWWLQQTRSADEAETRFFKCL--KCGHTWRE 102
[141][TOP]
>UniRef100_Q5V5C5 DNA-directed RNA-polymerase subunit M n=1 Tax=Haloarcula
marismortui RepID=Q5V5C5_HALMA
Length = 108
Score = 69.3 bits (168), Expect = 2e-10
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLV-------RKEID 336
MEFC C +M+K + + R C +C Y EK + +Q + E+
Sbjct: 1 MEFCDECGSMMKTD------DERWVCGSCGY----EKARNAEAEQEMAVTTQGQEESEVV 50
Query: 337 PVISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
D PTT RCP C +++A Y QIR+ADE T F+ C +C H+WRED
Sbjct: 51 DTSEVDAEDMGPTTGARCPECGNERAFYEMKQIRAADESETRFFTC--TECEHKWRED 106
[142][TOP]
>UniRef100_B6H1G4 DNA-directed RNA polymerase subunit n=1 Tax=Penicillium chrysogenum
Wisconsin 54-1255 RepID=B6H1G4_PENCW
Length = 116
Score = 68.9 bits (167), Expect = 2e-10
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHN-----SRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS 348
FCP+CSN L +R C+ CPY +EK K+ + +KE+D V
Sbjct: 4 FCPNCSNALTISKAESSTRFPAGVNRFECRVCPYEAPLEKNYFEKKAMK--QKEVDDVFG 61
Query: 349 -YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
++ NA + +CP +C+ ++A + ++QIRSADEP T F C + C +WRE+
Sbjct: 62 GKEEFANADSVATQCPAESCNGERAYFFQLQIRSADEPMTTFLKCTS--CGARWREN 116
[143][TOP]
>UniRef100_Q2FPF9 DNA-directed RNA polymerase, subunit M n=1 Tax=Methanospirillum
hungatei JF-1 RepID=Q2FPF9_METHJ
Length = 107
Score = 68.9 bits (167), Expect = 2e-10
Identities = 36/108 (33%), Positives = 52/108 (48%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FC C +LK + + C +C + K+K + KEI V + ++
Sbjct: 4 FCEKCGKLLKNQAGSF------ICTSCGWEKEGHGETKMKITDKRKEKEIVIVDDTESVR 57
Query: 364 NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
PT V+CPNC + +A + Q+RSADE F+ C N KC H WRE
Sbjct: 58 TLPTIAVKCPNCGNGEAFWWLRQLRSADESEVRFFRCTNSKCNHTWRE 105
[144][TOP]
>UniRef100_B6YVY9 DNA-directed RNA polymerase subunit M n=1 Tax=Thermococcus
onnurineus NA1 RepID=B6YVY9_THEON
Length = 110
Score = 68.9 bits (167), Expect = 2e-10
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRK-EIDP----V 342
M+FCP C N++ LP+ + C+ C Y ++ K + K R+ +K E P +
Sbjct: 1 MKFCPECGNLM---LPDRKRKVWV-CRKCGYEEPFDEE-KDREKTRITQKVEHKPDEGII 55
Query: 343 ISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
+ D+ P ++ CP C +D+A + E+Q R+ DEP+TIFY C KC H WR
Sbjct: 56 VVEQDLATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYKC--TKCGHVWR 107
[145][TOP]
>UniRef100_Q1E154 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
RepID=Q1E154_COCIM
Length = 117
Score = 68.6 bits (166), Expect = 3e-10
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 10/121 (8%)
Frame = +1
Query: 178 MEFCPSCSNMLKF-------ELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEID 336
+ FCP+CSN L + P +G N R C+TCPY +++ + + RKE+
Sbjct: 3 LTFCPNCSNALTISKGPPTSQYP-LGVN-RFECRTCPYQYVLDR--TYFERTEMKRKEVA 58
Query: 337 PVIS-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
V+ D+ KNA + +CP C D+A + ++QIRSADEP T F C C +WRE
Sbjct: 59 DVMGGKDEWKNADSMATQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCTT--CGARWRE 116
Query: 508 D 510
+
Sbjct: 117 N 117
[146][TOP]
>UniRef100_C5P9J4 DNA-directed RNA polymerase III subunit RPC10, putative n=1
Tax=Coccidioides posadasii C735 delta SOWgp
RepID=C5P9J4_COCP7
Length = 117
Score = 68.6 bits (166), Expect = 3e-10
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 10/121 (8%)
Frame = +1
Query: 178 MEFCPSCSNMLKF-------ELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEID 336
+ FCP+CSN L + P +G N R C+TCPY +++ + + RKE+
Sbjct: 3 LTFCPNCSNALTISRGPPTSQYP-LGVN-RFECRTCPYQYVLDR--TYFERTEMKRKEVA 58
Query: 337 PVIS-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
V+ D+ KNA + +CP C D+A + ++QIRSADEP T F C C +WRE
Sbjct: 59 DVMGGKDEWKNADSMATQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCTT--CGARWRE 116
Query: 508 D 510
+
Sbjct: 117 N 117
[147][TOP]
>UniRef100_B2VRT8 Putative uncharacterized protein n=1 Tax=Pyrenophora
tritici-repentis Pt-1C-BFP RepID=B2VRT8_PYRTR
Length = 108
Score = 68.6 bits (166), Expect = 3e-10
Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Frame = +1
Query: 241 SRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM-KNAPTTEVRCPN--CSHDK 411
+R C TCPY IE G +RK + +K++D VI D N TEV+CPN C + +
Sbjct: 21 NRFVCLTCPYQFVIE-GRYFERKY-MKKKDVDDVIGGKDAWANVDKTEVQCPNEKCRNHE 78
Query: 412 AAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
A + ++QIRSADEP T FY C +C +WRE
Sbjct: 79 AYWYQLQIRSADEPMTAFYKC--TQCAKEWRE 108
[148][TOP]
>UniRef100_UPI000187D4AA hypothetical protein MPER_05318 n=1 Tax=Moniliophthora perniciosa
FA553 RepID=UPI000187D4AA
Length = 70
Score = 68.2 bits (165), Expect = 4e-10
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = +1
Query: 307 KQRLVRKEIDPVISYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNE 483
+ +L RKE+D V+ ++M K+A +T CP C++ +A + ++QIRSADEP T FY C
Sbjct: 4 RTKLKRKEVDDVLGGEEMWKHADSTAASCPKCNNGQAYFYQLQIRSADEPMTTFYRC--T 61
Query: 484 KCRHQWRED 510
C HQWRE+
Sbjct: 62 ACAHQWREN 70
[149][TOP]
>UniRef100_UPI0000ECAA73 DNA-directed RNA polymerase III subunit RPC10 (RNA polymerase III
subunit C10) (DNA-directed RNA polymerase III subunit K)
(RNA polymerase III subunit C11) (RPC11) (HsC11p)
(hRPC11) (DNA-directed RNA polymerases III 12.5 kDa
polypeptide). n=1 Tax=Gallus gallus RepID=UPI0000ECAA73
Length = 99
Score = 67.8 bits (164), Expect = 5e-10
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDM 360
FCP+C N+L E H R C TCPYV + + V ++ RL KE+D V+
Sbjct: 4 FCPACGNVLVAEEGPRCH--RFACTTCPYVRNVTRKVSSRKYPRL--KEVDDVLGGAAAW 59
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLN 480
+N +T CP C H +A + ++Q RS D A FY C N
Sbjct: 60 ENVDSTAEPCPKCEHSRAYFMQIQTRSPDSRANTFYKCCN 99
[150][TOP]
>UniRef100_B6Q634 RNA polymerase III subunit C11, putative n=1 Tax=Penicillium
marneffei ATCC 18224 RepID=B6Q634_PENMQ
Length = 116
Score = 67.8 bits (164), Expect = 5e-10
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPN------MGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP 339
+ FCP CSN L + MG N R C+TCPY I++ + ++ K L +KE++
Sbjct: 3 LTFCPHCSNALTVSRADPSTAYPMGVN-RFQCRTCPYQFVIDR-LYVEEKV-LKQKEVEV 59
Query: 340 VISYDDM-KNAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
V + ++M KNA V+CP+ C+ + A + ++QIRSADEP T F C C WR+
Sbjct: 60 VFNDEEMFKNADKLPVQCPSDTCNGEYAYFYQLQIRSADEPMTTFLRCTT--CAKTWRD 116
[151][TOP]
>UniRef100_O29033 DNA-directed RNA polymerase subunit M n=1 Tax=Archaeoglobus
fulgidus RepID=RPOM_ARCFU
Length = 103
Score = 67.8 bits (164), Expect = 5e-10
Identities = 35/110 (31%), Positives = 59/110 (53%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP C +++ ++ +L C+ C Y + ++ K ++++ PVI ++
Sbjct: 1 MEFCPKCKSLMIYQ------GDKLVCRKCGYEKEADDSEELVIKVERNKEDV-PVIEGEN 53
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+K PTT+ CP C H++A + Q+R+ADE F+ C KC WRE
Sbjct: 54 LKTLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRC--TKCGKTWRE 101
[152][TOP]
>UniRef100_B8M829 RNA polymerase III subunit C11, putative n=1 Tax=Talaromyces
stipitatus ATCC 10500 RepID=B8M829_TALSN
Length = 116
Score = 67.4 bits (163), Expect = 7e-10
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPN------MGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP 339
+ FCP CSN L MG N R C+TCPY I++ + ++ K L +KE++
Sbjct: 3 LTFCPHCSNALTVSRAEPSTTYPMGVN-RFQCRTCPYQFVIDR-LYVEEKV-LKQKEVEV 59
Query: 340 VISYDDM-KNAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
V + ++M KNA V+CP+ C+ + A + ++QIRSADEP T F C C WR+
Sbjct: 60 VFNDEEMFKNADKLPVQCPSDTCNGEYAYFYQLQIRSADEPMTTFLRCTT--CAKTWRD 116
[153][TOP]
>UniRef100_B0XPK1 RNA polymerase III subunit C11, putative n=2 Tax=Aspergillus
fumigatus RepID=B0XPK1_ASPFC
Length = 116
Score = 67.4 bits (163), Expect = 7e-10
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 10/121 (8%)
Frame = +1
Query: 178 MEFCPSCSNMLKF-------ELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEID 336
+ FCP+C N L E P +G N R C+TCPY ++ G + K + +KE++
Sbjct: 2 LTFCPNCGNSLTISRGEPTREYP-LGVN-RFECRTCPYQHLLKHGRQ--EKTTMKQKEVE 57
Query: 337 PVIS-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
V ++ NA + +CP +C+ D+A + ++QIRSADEP T F C C +WRE
Sbjct: 58 DVFGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTT--CGARWRE 115
Query: 508 D 510
+
Sbjct: 116 N 116
[154][TOP]
>UniRef100_A1RXU9 DNA-directed RNA polymerase, subunit M n=1 Tax=Thermofilum pendens
Hrk 5 RepID=A1RXU9_THEPD
Length = 109
Score = 67.4 bits (163), Expect = 7e-10
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLF-CQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYD 354
MEFCP C ++ +P++ + ++ C C Y+ + R+ R D V D
Sbjct: 1 MEFCPKCGGLM---VPSVVNGKKVLRCSRCGYIVEKSNPGTYRVSHRIERTPKDVVTLVD 57
Query: 355 -DMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D+ P +C NC +DKA E+Q R+ DEPAT FY C KCR +RE
Sbjct: 58 VDVSVLPVVSFKCENCGNDKAYVYELQTRAGDEPATRFYIC--TKCRKVYRE 107
[155][TOP]
>UniRef100_C1GU30 DNA-directed RNA polymerases III 12.5 kDa polypeptide n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1GU30_PARBA
Length = 128
Score = 67.0 bits (162), Expect = 9e-10
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Frame = +1
Query: 187 CPSCSNMLKFELPN------MGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS 348
CP+CSN L +G N R C+TCPY +++ + + RKE+ V+
Sbjct: 17 CPNCSNALTISRAEPTSRYPLGVN-RFECRTCPYQYILDR--TYYERTEMKRKEVADVLG 73
Query: 349 -YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
D+ KNA + +CP C D+A + ++QIRSADEP T F C C +WRE+
Sbjct: 74 GKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCTT--CGARWREN 128
[156][TOP]
>UniRef100_A1CR48 RNA polymerase III subunit C11, putative n=1 Tax=Aspergillus
clavatus RepID=A1CR48_ASPCL
Length = 116
Score = 67.0 bits (162), Expect = 9e-10
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHN-----SRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPV 342
+ FCP+C N L + +R C+TCPY ++ G + K + +KE++ V
Sbjct: 2 LTFCPNCGNSLTISRGEPTRDYPLGVNRFECRTCPYQHILKNGRQ--EKTIMKQKEVEDV 59
Query: 343 IS-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ ++ NA + +CP +C+ D+A + ++QIRSADEP T F C C +WRE+
Sbjct: 60 LGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTT--CGARWREN 116
[157][TOP]
>UniRef100_A2RAZ1 Complex: hRPC11 is a small n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2RAZ1_ASPNC
Length = 117
Score = 66.6 bits (161), Expect = 1e-09
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Frame = +1
Query: 178 MEFCPSCSNMLKFEL--PNMGHN---SRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPV 342
+ FCP+CSN L P H +R C+TCPY +++ K + +KE++ V
Sbjct: 3 LTFCPNCSNALTISRAEPTTRHPLGVNRFECRTCPYQYALDQSWFEKTPMK--QKEVEDV 60
Query: 343 IS-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
++ NA + +CP +C+ D+A + ++QIRSADEP T F C C +WRE+
Sbjct: 61 FGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTT--CGARWREN 117
[158][TOP]
>UniRef100_Q6LXC3 Transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa
subunit n=1 Tax=Methanococcus maripaludis
RepID=Q6LXC3_METMP
Length = 105
Score = 66.6 bits (161), Expect = 1e-09
Identities = 37/110 (33%), Positives = 58/110 (52%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+EFCP C+N++ LP G + C+ + + +K K ++++ + + D
Sbjct: 2 VEFCPKCNNIM---LPKGGVLKCVVCKHEEELGDANQEYALKEKIESKKQDVTVIENVDT 58
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ PTT + CPNC + +A + Q R ADEP T FY C +KC H WRE
Sbjct: 59 L---PTTRIECPNCGNMEAFWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
[159][TOP]
>UniRef100_A7I6R8 Transcription termination factor Tfs n=1 Tax=Candidatus
Methanoregula boonei 6A8 RepID=A7I6R8_METB6
Length = 104
Score = 66.6 bits (161), Expect = 1e-09
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCP C ++L M +L C+ C Y+ IE K+ +++ EI V D+
Sbjct: 2 FCPECKSLL------MSSGGQLKCRKCGYIRKIESNDKMTMERKRTENEITIVDDEDEKV 55
Query: 364 NA-PTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
N PT +++CP C ++ A + Q+R+ADE F+ C +C H WR+
Sbjct: 56 NTMPTIQIKCPKCENNLAFWWLRQLRAADESEVRFFRC--TECGHTWRQ 102
[160][TOP]
>UniRef100_B8CB14 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8CB14_THAPS
Length = 113
Score = 66.2 bits (160), Expect = 2e-09
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Frame = +1
Query: 178 MEFCPSCSNMLKF----ELPNMGHNSRLF-CQTCPYVCYIEKGVKIKRKQRLVRKEIDPV 342
M FCP +L+ + ++ +F C TCPY I +K +RK++D +
Sbjct: 1 MWFCPLDGTLLQVITATSSASTSPSTNIFACTTCPYSQPIT--TPQIQKSFPIRKKVDDI 58
Query: 343 ISYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ + +N T CP CS +A + +MQIRSADEP ++FY C+ KC HQW +
Sbjct: 59 LGGEKAWENVDRTAAVCPGCSFGEAYFMQMQIRSADEPMSVFYKCV--KCSHQWND 112
[161][TOP]
>UniRef100_A8WJ33 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae
AF16 RepID=A8WJ33_CAEBR
Length = 315
Score = 66.2 bits (160), Expect = 2e-09
Identities = 28/49 (57%), Positives = 35/49 (71%)
Frame = +1
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
KNAP RCP CSH++A + ++Q RSADEP TIFY C N C H+W+E
Sbjct: 270 KNAPK---RCPLCSHERAYFMQLQTRSADEPITIFYRCANNSCAHRWKE 315
[162][TOP]
>UniRef100_Q3IUA8 Probable DNA-directed RNA polymerase subunit M 1 n=1
Tax=Natronomonas pharaonis DSM 2160 RepID=Q3IUA8_NATPD
Length = 108
Score = 66.2 bits (160), Expect = 2e-09
Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS--- 348
MEFC C +M+ E + C++C + EK R+ E S
Sbjct: 1 MEFCDECGSMMHSE------DGLWVCRSCGF----EKQQGDDDADRMTTTEGQDTDSGPV 50
Query: 349 ----YDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
DD + PTT V CP C +D+A Y QIR+ADE T F+ C +C H+WRED
Sbjct: 51 DMSEVDDSEIGPTTRVNCPECGNDRARYEMKQIRAADESETRFFTC--TECEHKWRED 106
[163][TOP]
>UniRef100_A7EJA6 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7EJA6_SCLS1
Length = 123
Score = 65.9 bits (159), Expect = 2e-09
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 15/124 (12%)
Frame = +1
Query: 184 FCPSCSNMLKFELP------------NMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRK 327
FCPSCSN+L + ++ +RL C TCPY + + I ++ VR+
Sbjct: 4 FCPSCSNILTVSVTPHSSTPTPTSTQDLSGANRLECLTCPYQYILTRS--IYDRKTFVRE 61
Query: 328 EIDPVISYDDM-KNAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQ 498
E + V D NA T +C N C+ AA +QIRSADEP T FY C+ C +Q
Sbjct: 62 EKEDVFGGKDAWANADTYPKQCANSECNGMVAAARFVQIRSADEPMTGFYRCMT--CANQ 119
Query: 499 WRED 510
WRE+
Sbjct: 120 WREN 123
[164][TOP]
>UniRef100_Q8U264 DNA-directed RNA polymerase subunit m n=1 Tax=Pyrococcus furiosus
RepID=Q8U264_PYRFU
Length = 110
Score = 65.5 bits (158), Expect = 3e-09
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIE-KGVKIKRKQRLVRKEIDP--VIS 348
++FCP C +++ +P+ C+ C Y I + K R+ V+ D V+
Sbjct: 2 VKFCPKCGSIM---IPDR-RRGVFVCRKCGYEEPINPEDTKAYRRTEEVKHRPDEGVVVI 57
Query: 349 YDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
++ PT +V CP C H++A + E+Q R+ DEP+TIFY C +KC + WR
Sbjct: 58 EQEVSTLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKC--KKCGYVWR 107
[165][TOP]
>UniRef100_Q9UYX7 Tfs archaeal transcription factor S n=1 Tax=Pyrococcus abyssi
RepID=Q9UYX7_PYRAB
Length = 110
Score = 65.1 bits (157), Expect = 3e-09
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYI--EKGVKIKRKQRLVRKEIDPVISY 351
++FCP C +++ +P+ C+ C Y I E KR + + K + VI
Sbjct: 2 VKFCPKCGSIM---IPDKKRGV-FVCRRCGYEEPINPEDAKAYKRTEEVKHKPDEGVIVV 57
Query: 352 D-DMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
+ D PT +V CP C + +A Y E+Q R+ DEP+TIFY C ++C + WR
Sbjct: 58 EQDFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFYKC--KRCGYVWR 107
[166][TOP]
>UniRef100_A3CVC4 DNA-directed RNA polymerase, subunit M n=1 Tax=Methanoculleus
marisnigri JR1 RepID=A3CVC4_METMJ
Length = 104
Score = 65.1 bits (157), Expect = 3e-09
Identities = 34/110 (30%), Positives = 52/110 (47%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP C ++ + +L C+ C Y+ I+ ++K+ + V KEI V D
Sbjct: 1 MMFCPQCKGLM------ISSGGQLKCKKCGYIREIDDSDRLKKTDKRVEKEITIVDEEDK 54
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ PT ++CP C A + Q+R+ADE F+ C C WRE
Sbjct: 55 IATLPTASIKCPECDCTTAFWWLRQLRAADESEVRFFRC--TACGKTWRE 102
[167][TOP]
>UniRef100_B9ZB19 Transcription termination factor Tfs n=1 Tax=Natrialba magadii ATCC
43099 RepID=B9ZB19_NATMA
Length = 102
Score = 65.1 bits (157), Expect = 3e-09
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVR--KEIDPVISY 351
MEFC C +M+K + + C +C Y K + +V +E VI
Sbjct: 1 MEFCDECGSMMKAD------DGLWECGSCGYT-----KPKGDADEYVVTDSQEATEVIES 49
Query: 352 DDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ + P T+ CP C HD+A + QIRSADE T F+ C +C H+WRED
Sbjct: 50 SEETSLPETDAHCPECGHDRAYWYMQQIRSADESETRFFIC--SECEHKWRED 100
[168][TOP]
>UniRef100_A1D3Y9 RNA polymerase III subunit C11, putative (Fragment) n=1
Tax=Neosartorya fischeri NRRL 181 RepID=A1D3Y9_NEOFI
Length = 116
Score = 64.7 bits (156), Expect = 5e-09
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Frame = +1
Query: 187 CPSCSNMLKF-------ELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVI 345
CP+C N L E P +G N R C+TCPY ++ G + K + +KE++ V
Sbjct: 5 CPNCGNSLTISRGEPTREYP-LGVN-RFECRTCPYQHLLKHGRQ--EKTTMKQKEVEDVF 60
Query: 346 S-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
++ NA + +CP +C+ D+A + ++QIRSADEP T F C C +WRE+
Sbjct: 61 GGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTT--CGARWREN 116
[169][TOP]
>UniRef100_A4WLS3 DNA-directed RNA polymerase, subunit M n=1 Tax=Pyrobaculum
arsenaticum DSM 13514 RepID=A4WLS3_PYRAR
Length = 110
Score = 64.7 bits (156), Expect = 5e-09
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP+ ++L + G + L C C Y + VK + + ++ + +PV+
Sbjct: 1 MRFCPNDRSILVPK--KKGDKTVLVCPKCGYEEEASQDVKSRYQSKMTVENKNPVVVVAG 58
Query: 358 MK-NAPTTEVR-CPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ N P + R CP C HD+A + Q R+ADEP T FY C KC H WRE
Sbjct: 59 NEVNLPKVKTRGCPKCGHDEAYFWVQQTRAADEPPTRFYRC--TKCGHTWRE 108
[170][TOP]
>UniRef100_A8TE75 Transcription termination factor Tfs n=1 Tax=Methanococcus voltae
A3 RepID=A8TE75_METVO
Length = 105
Score = 64.7 bits (156), Expect = 5e-09
Identities = 35/110 (31%), Positives = 53/110 (48%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+EFCP C+N++ LP G L C C + +E + + V ++
Sbjct: 2 VEFCPKCNNIM---LPKEGI---LKCVVCGFESSLENNKDKYELSEKIESKSQDVTVIEN 55
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ P+ + CP+C + +A + Q R ADEP T FY C +KC H WRE
Sbjct: 56 VNTLPSIRIECPSCGNMEAYWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
[171][TOP]
>UniRef100_B6HSN1 Pc22g04170 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6HSN1_PENCW
Length = 124
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = +1
Query: 340 VISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQW 501
V+S D+ + P T++ CP CS+ KA +TE Q+RSADE +TIFY C KCRH++
Sbjct: 59 VVSQKDLGDGPITDMECPQCSNSKATWTEAQLRSADEGSTIFYCC--TKCRHRY 110
[172][TOP]
>UniRef100_A6VH15 Transcription termination factor Tfs n=2 Tax=Methanococcus
maripaludis RepID=A6VH15_METM7
Length = 105
Score = 64.3 bits (155), Expect = 6e-09
Identities = 36/110 (32%), Positives = 57/110 (51%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+EFCP C+N++ LP G + C+ + + +K K ++++ + + D
Sbjct: 2 VEFCPKCNNIM---LPKAGVLKCVVCKHEEELGDANQEYALKEKIESKKQDVTVIENVDT 58
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ PTT + CP C + +A + Q R ADEP T FY C +KC H WRE
Sbjct: 59 L---PTTRIECPACGNMEAFWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
[173][TOP]
>UniRef100_B5IU63 Transcription factor S n=1 Tax=Thermococcus barophilus MP
RepID=B5IU63_9EURY
Length = 109
Score = 64.3 bits (155), Expect = 6e-09
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYI--EKGVKIKRKQRLVRKEIDPVISY 351
++FCP C +++ LP+ C+ C Y + E + Q++ K D I
Sbjct: 2 VKFCPKCGSIM---LPDRKREV-FVCRKCGYEEPLNPEAAKAYRLTQKVEHKVEDIPIIE 57
Query: 352 DDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
D+ P ++ CP C +D+A + E+Q R+ DEP+TIFY C KC + WR
Sbjct: 58 QDLATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYRC--TKCGYTWR 106
[174][TOP]
>UniRef100_C5JU87 DNA-directed RNA polymerase subunit n=1 Tax=Ajellomyces
dermatitidis SLH14081 RepID=C5JU87_AJEDS
Length = 111
Score = 63.9 bits (154), Expect = 8e-09
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPN------MGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP 339
+ FCP+CSN L + +G N R C+TCPY +++ + + RKE+
Sbjct: 3 LTFCPNCSNALTISRADPTPRYPLGVN-RFECRTCPYQYVLDR--TYYERTEMKRKEVAD 59
Query: 340 VIS-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIFY 468
V+ D+ KNA + +CP C D+A + ++QIRSADEP T F+
Sbjct: 60 VLGGKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFF 105
[175][TOP]
>UniRef100_B1L5R4 DNA-directed RNA polymerase, subunit M n=1 Tax=Candidatus
Korarchaeum cryptofilum OPF8 RepID=B1L5R4_KORCO
Length = 108
Score = 63.9 bits (154), Expect = 8e-09
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCP C +L+ + G +C +C Y + ++ + D +I + K
Sbjct: 2 FCPKCGTLLRPK--KAGKRLIYYCPSCGYESESPPKGNSQVITKVTSESGDVIIEEESEK 59
Query: 364 -NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+AP E RCP C +DKA + +Q R+ADEP T Y C KC + WRE
Sbjct: 60 ISAPVVEARCPKCGNDKAYFQIVQTRAADEPPTRIYKC--TKCGYSWRE 106
[176][TOP]
>UniRef100_Q9HS34 DNA-directed RNA-polymerase subunit M n=2 Tax=Halobacterium
salinarum RepID=Q9HS34_HALSA
Length = 104
Score = 63.9 bits (154), Expect = 8e-09
Identities = 37/111 (33%), Positives = 54/111 (48%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFC C +M+K + + C +C + + + E+ V D
Sbjct: 1 MEFCDDCGSMMKAD------DELWVCSSCGHKQPKDPSASFVVTEGQEETEVVDVSDAQD 54
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ PTT V CP+C +D+A + QIRSADE T F+ C +C H+WRED
Sbjct: 55 -RGLPTTSVVCPDCDNDEAHWYMQQIRSADESETRFFIC--TECEHRWRED 102
[177][TOP]
>UniRef100_A9A2X5 Transcription termination factor Tfs n=1 Tax=Nitrosopumilus
maritimus SCM1 RepID=A9A2X5_NITMS
Length = 105
Score = 63.9 bits (154), Expect = 8e-09
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEI--DPVISY 351
M+FCP C LK S L C C Y +G + K+ ++ V E + ++++
Sbjct: 1 MKFCPKCEVKLK------KGTSGLECSKCGYT----EGAEEKQTKKTVETEEQEESILAF 50
Query: 352 DDMKNA---PTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
+ + PT ++ C C HD+A + +Q RSADEP T FY C KC++ WR
Sbjct: 51 EGNEGEESHPTIKIECEKCGHDEAIWWMLQTRSADEPTTQFYRC--TKCQYTWR 102
[178][TOP]
>UniRef100_O27369 DNA-directed RNA polymerase subunit M n=1 Tax=Methanothermobacter
thermautotrophicus str. Delta H RepID=RPOM_METTH
Length = 104
Score = 63.9 bits (154), Expect = 8e-09
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGV--KIKRKQRLVRKEIDP---- 339
MEFCP C ++ P+ G + CQ C EK + K+K K R V +E++
Sbjct: 1 MEFCPKCGAVM---FPSEG---KFKCQ-----CGYEKDITDKLKDKYR-VSEEVEAKETI 48
Query: 340 VISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ + DD+ PTT V CP C + +A + Q R ADE T F+ C +C+H WRE
Sbjct: 49 IFTGDDVNTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRC--TRCKHTWRE 102
[179][TOP]
>UniRef100_A0E7M3 Chromosome undetermined scaffold_81, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0E7M3_PARTE
Length = 118
Score = 63.5 bits (153), Expect = 1e-08
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Frame = +1
Query: 181 EFCPSCSNMLKFELPNMGHNSRLFCQTCPYVC--------YIEKGVKIKRKQRLVRKEID 336
+FCP C ML ELP + + C C Y C YI +K++ K L + +
Sbjct: 8 DFCPQCHFML--ELPEV--MDIIECNRCGYKCSITDYQPKYIISTIKMEPKSWLSNQPQE 63
Query: 337 PVISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQ 498
+S D + E CP CSH++A ++ Q+RSADE +T+FY C+ + R+Q
Sbjct: 64 SKLS--DQSHRAVIEQVCPKCSHEEAYFSTAQLRSADEGSTVFYECVKCQFRYQ 115
[180][TOP]
>UniRef100_Q7SF80 DNA-directed RNA polymerase subunit n=1 Tax=Neurospora crassa
RepID=Q7SF80_NEUCR
Length = 111
Score = 63.5 bits (153), Expect = 1e-08
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM- 360
FCP C+N+L + G N RL C+TCPY I+K I ++ RKE + V
Sbjct: 5 FCPFCANLLILSRADTGGN-RLECRTCPYEHPIDK--PIYSRKNFPRKEKEDVFGGPGAW 61
Query: 361 KNAPTTEVRCPN--CSHDKAAYTEMQIRSADEPATIFY 468
NA +V+C + C+ ++AA+ ++QIRSADEP T FY
Sbjct: 62 DNAQKGKVQCDSGTCNGNEAAFFQVQIRSADEPMTTFY 99
[181][TOP]
>UniRef100_Q46E40 DNA-directed RNA polymerase, subunit M n=1 Tax=Methanosarcina
barkeri str. Fusaro RepID=Q46E40_METBF
Length = 104
Score = 63.5 bits (153), Expect = 1e-08
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVK-IKRKQRLVRKEIDPVISYD 354
M+FCP C +M+ N C+ C + I+ K K ++ EI V+ +
Sbjct: 1 MQFCPKCKSMM------FPKNGNFECRKCGNIIPIKSDEKSFVSKDKIDDHEI-VVLEGE 53
Query: 355 DMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ PTT V+CP C ++ AA+ Q+RSADE T F+ C KC WRE
Sbjct: 54 QISGLPTTSVKCPECGNNTAAWWLRQLRSADESETRFFKC--TKCGFTWRE 102
[182][TOP]
>UniRef100_O58397 110aa long hypothetical transcription-associated protein n=1
Tax=Pyrococcus horikoshii RepID=O58397_PYRHO
Length = 110
Score = 63.5 bits (153), Expect = 1e-08
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYI--EKGVKIKRKQRLVRKEIDPVISY 351
++FCP C +++ +P+ C+ C Y I E +R + + K + VI
Sbjct: 2 VKFCPRCGSIM---IPDKKRGV-FVCRKCGYEEPINPEDAKAYRRTEEIKHKPDEGVIVI 57
Query: 352 D-DMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
+ D PT +V CP C + +A Y E+Q R+ DEP+TIFY C ++C + WR
Sbjct: 58 EQDFSTLPTAKVTCPKCGYHEAWYWEVQTRAGDEPSTIFYKC--KRCGYVWR 107
[183][TOP]
>UniRef100_B1YAF4 Transcription termination factor Tfs n=1 Tax=Thermoproteus
neutrophilus V24Sta RepID=B1YAF4_THENV
Length = 110
Score = 63.5 bits (153), Expect = 1e-08
Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELP-NMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISY- 351
M FCP+ ++L +P G + L C C Y VK + + + + +PVI
Sbjct: 1 MRFCPNDRSLL---VPVKRGDKTVLRCPKCGYEEEASGDVKSRYQSKAAVENKNPVIVVA 57
Query: 352 DDMKNAPTTEVR-CPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D+ N P + R CP C HD+A Q R+ADEP T FY C KC H WRE
Sbjct: 58 DNPVNLPKAKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRC--TKCGHTWRE 108
[184][TOP]
>UniRef100_A8AAT2 DNA-directed RNA polymerase, subunit M n=1 Tax=Ignicoccus
hospitalis KIN4/I RepID=A8AAT2_IGNH4
Length = 113
Score = 63.5 bits (153), Expect = 1e-08
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEI-DPVISYD 354
M FCP C +++ +G + L C C Y + R + +R + + + D
Sbjct: 1 MRFCPKCGSLMVAR--RVGGKTILKCMRCGYEMEVTGAQSTLRTAKKIRHSVKEKTVVID 58
Query: 355 D---MKNAPTT-EVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ ++ P T +V CP C HD+A Y +Q R+ DEP T FY C +C H WRE
Sbjct: 59 NNIKVETLPKTRDVICPKCGHDEAYYWFVQTRAGDEPPTRFYKC--TRCGHVWRE 111
[185][TOP]
>UniRef100_A4FW95 DNA-directed RNA polymerase, subunit M n=1 Tax=Methanococcus
maripaludis C5 RepID=A4FW95_METM5
Length = 105
Score = 63.5 bits (153), Expect = 1e-08
Identities = 36/110 (32%), Positives = 57/110 (51%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
+EFCP C+N++ LP G + C+ + + +K K ++++ + + D
Sbjct: 2 VEFCPKCNNIM---LPKGGVLKCVVCKHEEELGDANQEYALKEKIESKKQDVTVIENVDT 58
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ PTT + CP C + +A + Q R ADEP T FY C +KC H WRE
Sbjct: 59 L---PTTRIECPACGNMEAFWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
[186][TOP]
>UniRef100_Q07271 DNA-directed RNA polymerase subunit M n=1 Tax=Sulfolobus
acidocaldarius RepID=RPOM_SULAC
Length = 111
Score = 63.5 bits (153), Expect = 1e-08
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLF-CQTCPYV-CYIEKGVKIKRKQRLVRKEIDPVISY 351
M+FCP C +M+ +P + ++ C C Y+ +K KI + KE V+
Sbjct: 1 MKFCPKCGSMM---MPRKENGKTVYKCSKCGYIDTENQKEAKITTVIKHSAKEKTLVLES 57
Query: 352 DDMKNAP--TTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D K T + CP+C +D+A + +Q RSADEPAT FY C KC WRE
Sbjct: 58 DMPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKC--TKCGKVWRE 109
[187][TOP]
>UniRef100_B5X7W8 DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Salmo salar
RepID=B5X7W8_SALSA
Length = 93
Score = 63.2 bits (152), Expect = 1e-08
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +1
Query: 325 KEIDPVIS-YDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQW 501
KE+D V+ +N +T +CP C H +A + ++Q RSADEP T FY C N +C H+W
Sbjct: 32 KEVDDVLGGAAAWENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGHRW 91
Query: 502 RE 507
R+
Sbjct: 92 RD 93
[188][TOP]
>UniRef100_Q387Z6 RNA polymerase III C11 subunit, putative n=2 Tax=Trypanosoma brucei
RepID=Q387Z6_9TRYP
Length = 126
Score = 63.2 bits (152), Expect = 1e-08
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP C +L E P N R C +C YV I+ + ++ + V+ DD
Sbjct: 1 MFFCPFCGTLLLIE-PAYPCN-RFSCSSCRYVVPIQSRRPLTINHSFLK--YNKVVDDDD 56
Query: 358 MKNAPTT-----------------EVRCPN----CSHDKAAYTEMQIRSADEPATIFYWC 474
K + T VRC N C D+A Y ++Q+RSADEPAT F+ C
Sbjct: 57 EKGSSNTVKRGVKEEEEVDGGQVITVRCQNDEKQCDGDRAHYVQIQMRSADEPATTFFKC 116
Query: 475 LNEKCRHQWRED 510
L KC QW++D
Sbjct: 117 L--KCGFQWKQD 126
[189][TOP]
>UniRef100_Q8SSB3 DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT n=1
Tax=Encephalitozoon cuniculi RepID=Q8SSB3_ENCCU
Length = 104
Score = 63.2 bits (152), Expect = 1e-08
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP CS+ML + +G+ L C+ C Y+ I + +I R + K+ + + D+
Sbjct: 1 MLFCPLCSSMLVVKKQAIGNE--LSCKMCGYLYAISE--EISRTVGMTPKKSEGFVDEDE 56
Query: 358 -MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+K RC C ++ ++ E+Q RSADEP TIFY C+ +C+ W+E
Sbjct: 57 SLKFVTKCGKRC-ECGSEEVSFVELQTRSADEPMTIFYKCI--RCKKVWKE 104
[190][TOP]
>UniRef100_Q2NE53 RpoM1 n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NE53_METST
Length = 105
Score = 62.8 bits (151), Expect = 2e-08
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRL-----VRKEIDPV 342
MEFCP C +L P G + C C Y EKGV + K++ V KE +
Sbjct: 1 MEFCPECGKVL---FPKDG---KFTCDACGY----EKGVTEESKKQYEVAEKVDKEDTVI 50
Query: 343 ISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
++ ++K PT +V CP C + A + Q RSADE T F+ C +C + WRE
Sbjct: 51 VTDGNVKTLPTIKVICPKCGNKLAFWWLQQTRSADESETRFFRC--TECDYTWRE 103
[191][TOP]
>UniRef100_Q9Y1T9 Transcription factor IIS homolog (Fragment) n=1 Tax=Giardia
intestinalis RepID=Q9Y1T9_GIALA
Length = 70
Score = 62.4 bits (150), Expect = 2e-08
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 298 IKRKQRLVRKEIDPVISYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWC 474
I R L RK +DPV+ + + A T+ CP C+ A + +MQIRS+DEP + FY C
Sbjct: 1 ISRSLTLTRKSVDPVLGGETAWQGADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRC 60
Query: 475 LNEKCRHQWRED 510
+C HQWRED
Sbjct: 61 C--QCAHQWRED 70
[192][TOP]
>UniRef100_C0S3L8 DNA-directed RNA polymerase subunit n=1 Tax=Paracoccidioides
brasiliensis Pb03 RepID=C0S3L8_PARBP
Length = 134
Score = 62.4 bits (150), Expect = 2e-08
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPN------MGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP 339
+ FCP+CSN L +G N R C+TCPY +++ + + RKE+
Sbjct: 3 LTFCPNCSNALTISRSEPTSRYPLGVN-RFECRTCPYQYILDR--TYYERTEMKRKEVAD 59
Query: 340 VIS-YDDMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIF 465
V+ D+ KNA + +CP C D+A + ++QIRSADEP T F
Sbjct: 60 VLGGKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTF 104
[193][TOP]
>UniRef100_C7NPX2 Transcription termination factor Tfs n=1 Tax=Halorhabdus utahensis
DSM 12940 RepID=C7NPX2_HALUD
Length = 106
Score = 62.4 bits (150), Expect = 2e-08
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTC----PYVCYIEKGVKIKRKQRLVRKEIDPVI 345
MEFC C +M+K E C +C P E G+ + Q E V+
Sbjct: 1 MEFCDECGSMMKTE------GDMWVCGSCGAETPREAATESGMVTTQGQ-----EAGEVV 49
Query: 346 SYDDMKN--APTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
D + PTTE++C C +D+A + QIR+ADE T F+ C +C H+WRED
Sbjct: 50 DLSDSEADARPTTEIQCVECDNDRAYWELKQIRAADESETRFFTC--TECGHKWRED 104
[194][TOP]
>UniRef100_UPI0001792CC5 PREDICTED: similar to GA17233-PA n=1 Tax=Acyrthosiphon pisum
RepID=UPI0001792CC5
Length = 97
Score = 62.0 bits (149), Expect = 3e-08
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 FCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDM-KNAPTTEVRCPNCSHDKAAYTE 426
FC C + ++++ + R++ +EID V+ + +N + +V C +C+H +A + +
Sbjct: 16 FCPNCSNILHLDEYLGEMRQKC---QEIDSVLGGKNAWENVDSIDVVCNSCNHGRAYFLQ 72
Query: 427 MQIRSADEPATIFYWCLNEKCRHQWRE 507
+Q RSADEP T+FY C N C H+WRE
Sbjct: 73 VQTRSADEPMTVFYKCCN--CGHRWRE 97
[195][TOP]
>UniRef100_A3MUU7 DNA-directed RNA polymerase, subunit M n=1 Tax=Pyrobaculum
calidifontis JCM 11548 RepID=A3MUU7_PYRCJ
Length = 124
Score = 62.0 bits (149), Expect = 3e-08
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELP-NMGHNSRLFCQTCPYVCYIEKGVKIKRKQR-LVRKEIDPVISY 351
+ FCP+ ++L +P G + L C C Y + + V+ + + + V + ++
Sbjct: 15 VRFCPNDKSLL---IPVKKGDRTVLRCPKCGYEEEVSQEVRGRYQSKSAVENKNQLIVVA 71
Query: 352 DDMKNAPTTEVR-CPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D+ N P + R CP C HD+A + Q R+ADEP T FY C KC H WRE
Sbjct: 72 DNAVNLPKVKTRGCPKCGHDEAYFWVQQTRAADEPPTRFYKC--TKCGHVWRE 122
[196][TOP]
>UniRef100_A7ASV0 Transcription factor S-II protein, putative n=1 Tax=Babesia bovis
RepID=A7ASV0_BABBO
Length = 109
Score = 61.6 bits (148), Expect = 4e-08
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEID-PVISYDDM 360
FCP C ++L F N S C C Y I + KEI S ++
Sbjct: 4 FCPLCHSVLFFSC-NPPQTSTFSCMRCVYELPISRRYHKSTVYTQFEKEIPRSPHSVNEF 62
Query: 361 KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
++AP CP+C + +A + +Q RSADEP T F+ C CRH+W+E
Sbjct: 63 EHAPKIIAVCPSCHNKEAYFMSIQTRSADEPMTQFFVC--TACRHRWKE 109
[197][TOP]
>UniRef100_Q74N12 NEQ377 n=1 Tax=Nanoarchaeum equitans RepID=Q74N12_NANEQ
Length = 106
Score = 61.6 bits (148), Expect = 4e-08
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNM-GHNSRLFCQTCPYVCYIEKGV---KIKRKQRLVRKEIDPVI 345
MEFCP ++L +P G + L C C Y + V ++K+K+ L + +
Sbjct: 1 MEFCPKDGSIL---IPKKEGDKTYLVCPVCGYKKEVTSLVIKEEVKKKEELGKGIAEKET 57
Query: 346 SYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
Y K V+CP CS ++ Y +Q R++DE TIFY CL KC + WRE
Sbjct: 58 IYSKAKG-----VKCPKCSSEEVVYFTLQTRASDEAETIFYKCL--KCGYTWRE 104
[198][TOP]
>UniRef100_B8GDN8 Transcription termination factor Tfs n=1 Tax=Methanosphaerula
palustris E1-9c RepID=B8GDN8_METPE
Length = 103
Score = 61.6 bits (148), Expect = 4e-08
Identities = 32/108 (29%), Positives = 55/108 (50%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCP C +++ + +L C+ C Y+ I +++ +++ KEI ++
Sbjct: 2 FCPQCKSLM------ISSAGQLKCKRCGYIRDITGADQMRIEEKRSEKEIIFFDEDQEVA 55
Query: 364 NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
PT ++CP C H+ A + Q+RSADE F+ C+ KC + WRE
Sbjct: 56 TKPTFAIKCPECEHNLAFWWMRQLRSADESEVRFFKCV--KCGYTWRE 101
[199][TOP]
>UniRef100_A0RXH6 DNA-directed RNA polymerase, subunit M/Transcription elongation
factor TFIIS n=1 Tax=Cenarchaeum symbiosum
RepID=A0RXH6_CENSY
Length = 103
Score = 61.6 bits (148), Expect = 4e-08
Identities = 37/109 (33%), Positives = 49/109 (44%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP C + L+ + C C Y +G K K EI+ + D
Sbjct: 1 MRFCPKCEDRLR------KNGDASVCPKCGYTESAARG-PTKAKPAEGTPEINVLDGPVD 53
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
K T ++ C C H +A + +Q RSADEP T FY C+ KC H WR
Sbjct: 54 EKLLSTIKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCI--KCSHTWR 100
[200][TOP]
>UniRef100_B4QZ91 GD18505 n=1 Tax=Drosophila simulans RepID=B4QZ91_DROSI
Length = 120
Score = 61.2 bits (147), Expect = 5e-08
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCPSC ++L P + +FC C + K + + DP ++ K
Sbjct: 10 FCPSCGSIL----PELQVKGNVFCCNCKQEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTK 65
Query: 364 -------NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ P E +CP C+HDK +Y +Q+RSADE T+F+ CL KC+ + E+
Sbjct: 66 RESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESEN 119
[201][TOP]
>UniRef100_Q8ZTX9 DNA-directed RNA polymerase subunit M n=1 Tax=Pyrobaculum
aerophilum RepID=Q8ZTX9_PYRAE
Length = 110
Score = 61.2 bits (147), Expect = 5e-08
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELP-NMGHNSRLFCQTCPYVCYIEKGVKIKRKQRL-VRKEIDPVISY 351
M FCP+ ++L +P G+ + L C C Y + + VK + + + V ++
Sbjct: 1 MRFCPNDKSLL---IPVRKGNVTVLRCPKCGYEEEVSQDVKNRYQSKTAVESRNSVIVVA 57
Query: 352 DDMKNAPTTEVR-CPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D N P + R CP C HD+A Q R+ADEP T FY C KC + WRE
Sbjct: 58 DTTPNLPKVKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRC--TKCGYTWRE 108
[202][TOP]
>UniRef100_Q6FUU6 DNA-directed RNA polymerase subunit n=1 Tax=Candida glabrata
RepID=Q6FUU6_CANGA
Length = 128
Score = 60.8 bits (146), Expect = 7e-08
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIK-----------RKQRLVRKE 330
FC C N+L + +++ + C C + +K RL R
Sbjct: 9 FCDDCGNLLDNPEDKINNSNVIECSQCQAEYAKSQFTNLKVVTSTSEDAFPSSLRLKRSV 68
Query: 331 IDPVISYDDMKN-APTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
+ + D++K+ T + +CP C HD+ Y +Q+RSADE AT+FY C+ KC +++R
Sbjct: 69 VKTHLKRDELKDDGATIKEKCPKCGHDEMRYQTLQLRSADEGATVFYTCI--KCNYKYR 125
[203][TOP]
>UniRef100_C1G1F3 Putative uncharacterized protein n=1 Tax=Paracoccidioides
brasiliensis Pb18 RepID=C1G1F3_PARBD
Length = 137
Score = 60.8 bits (146), Expect = 7e-08
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +1
Query: 241 SRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDMKNAPTTEVRCP--NCSHDK 411
+R C+TCPY +++ + + RKE+ V+ D+ KNA + +CP C D+
Sbjct: 49 NRFECRTCPYQYILDR--TYYERTEMKRKEVADVLGGKDEWKNADSIGTQCPAEGCDGDR 106
Query: 412 AAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
A + ++QIRSADEP T F C C +WRE+
Sbjct: 107 AFFYQLQIRSADEPMTTFLKCTT--CGARWREN 137
[204][TOP]
>UniRef100_A1RRN5 DNA-directed RNA polymerase, subunit M n=1 Tax=Pyrobaculum
islandicum DSM 4184 RepID=A1RRN5_PYRIL
Length = 110
Score = 60.8 bits (146), Expect = 7e-08
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELP-NMGHNSRLFCQTCPYVCYIEKGVKIKRKQR-LVRKEIDPVISY 351
M FCP+ ++L +P G + L C C Y I K + + + +V + ++
Sbjct: 1 MRFCPNDKSLL---IPVRKGDKTVLRCPKCGYEEEISGDAKNRYQSKSIVESKNTIIVVS 57
Query: 352 DDMKNAPTTEVR-CPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D++ N P + R CP C HD+A Q R+ADEP T FY C KC + WRE
Sbjct: 58 DNIINLPKVKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRC--TKCGYTWRE 108
[205][TOP]
>UniRef100_Q791N7 DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Mus musculus
RepID=RPA12_MOUSE
Length = 123
Score = 60.8 bits (146), Expect = 7e-08
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIE--KGVKIKRKQRLVRKEIDPVISY 351
++FCP C ++L P G + C C + + +G +K + +S
Sbjct: 14 LDFCPDCGSVL----PLPGIQDTVICSRCGFSIDVRDCEGKVVKTSVVFNKLGATIPLSV 69
Query: 352 DDMKN--APTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
D+ P + RCP C H+ AY Q+RSADE T+FY C+N C+ Q +ED
Sbjct: 70 DEGPELQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCIN--CKFQEKED 122
[206][TOP]
>UniRef100_Q4U9E5 RNA polymerase small subunit, putative n=1 Tax=Theileria annulata
RepID=Q4U9E5_THEAN
Length = 108
Score = 60.5 bits (145), Expect = 9e-08
Identities = 33/108 (30%), Positives = 54/108 (50%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCP C ++L FE +NS C C Y + K + V++ + ++ +
Sbjct: 4 FCPLCHSILYFESKEY-NNSSFSCLRCSYNLPVTKNYYKETVCTNVKEAGKTLFEANEFQ 62
Query: 364 NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+AP CP+C++ +A + +Q RSADEP T F+ C C +W+E
Sbjct: 63 HAPRIPAVCPSCNNKEAYFMSIQTRSADEPMTQFFVCTG--CLKRWKE 108
[207][TOP]
>UniRef100_B4JU97 GH16255 n=1 Tax=Drosophila grimshawi RepID=B4JU97_DROGR
Length = 120
Score = 60.5 bits (145), Expect = 9e-08
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTC-----PYVCYIEKGVKIKRKQRLVRKEIDPVIS 348
FCPSC ++L P + +FC C P V EK E++ +
Sbjct: 10 FCPSCGSIL----PPLQVKGNVFCFNCKQEFSPDVYIGEKSEYTINFNSYDPSELNKKVH 65
Query: 349 YDDMKNA--PTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ A P E +CP C H+K +Y +Q+RSADE T+F+ CL KC+++ E+
Sbjct: 66 RESETEADGPVVERKCPKCGHEKMSYATLQLRSADEGQTVFFTCL--KCKYKESEN 119
[208][TOP]
>UniRef100_Q29AR6 GA12270 n=2 Tax=pseudoobscura subgroup RepID=Q29AR6_DROPS
Length = 121
Score = 60.1 bits (144), Expect = 1e-07
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCPSC ++L P + + C C + K + + DP ++ K
Sbjct: 10 FCPSCGSIL----PPLQVKGNVICHNCHQEFLPDVYGGEKTEYSIQFNTYDPSKVFNRTK 65
Query: 364 --------NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ P E +CP C HDK +Y +Q+RSADE T+F+ CL KC+++ E+
Sbjct: 66 RESESSEADGPVVERKCPKCGHDKMSYATLQLRSADEGQTVFFTCL--KCKYKESEN 120
[209][TOP]
>UniRef100_A0CQT2 Chromosome undetermined scaffold_24, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0CQT2_PARTE
Length = 104
Score = 60.1 bits (144), Expect = 1e-07
Identities = 38/111 (34%), Positives = 54/111 (48%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP CSN L E +S + CP Y +++ + KE P I+Y
Sbjct: 1 MNFCPICSNFLSLE----NESSTGYRLKCPGCVYYHPLKEMRLTKTFQSKEPAP-ITY-P 54
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+N T+ +C C KA + E Q R ADE +TI + C+ KC H+W+ D
Sbjct: 55 QQNKQITDEQCDKCGCLKAFFWEFQTRGADEQSTISFECI--KCGHKWKND 103
[210][TOP]
>UniRef100_A2BN99 DNA-directed RNA polymerase subunit M n=1 Tax=Hyperthermus
butylicus DSM 5456 RepID=A2BN99_HYPBU
Length = 114
Score = 60.1 bits (144), Expect = 1e-07
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Frame = +1
Query: 178 MEFCPSCSNMLKFE---------LPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKE 330
M+FCP C +++ P+ G+ L + + + K +K K+R+V
Sbjct: 1 MKFCPRCGSLMTLRRTNDRTVWVCPSCGYTEELSQASEAQLAVLRKEIKHSEKERIV--V 58
Query: 331 IDPVISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+DP +++ M P T+ CP C + +A +Q R ADEP T F+ C++ C + WRE
Sbjct: 59 VDPNVNWKAM---PKTKAVCPRCGYHEAYVWVVQTRRADEPPTRFFKCVS--CGYVWRE 112
[211][TOP]
>UniRef100_C8S6S2 Transcription termination factor Tfs n=1 Tax=Ferroglobus placidus
DSM 10642 RepID=C8S6S2_FERPL
Length = 102
Score = 60.1 bits (144), Expect = 1e-07
Identities = 36/110 (32%), Positives = 55/110 (50%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP C +++ ++ + C+ C + + I +R KE PVI ++
Sbjct: 1 MEFCPKCKSIMIYQ------GDKAVCRKCGFEKDAGEKEFITVSKR--NKEEIPVIEEEN 52
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+K PTT V CP C + +A + Q+R+ADE F+ C KC WRE
Sbjct: 53 VKTLPTTNVICPACGNREAYWWLRQLRAADESEVRFFRC--TKCGKTWRE 100
[212][TOP]
>UniRef100_UPI00006CB60F hypothetical protein TTHERM_00444250 n=1 Tax=Tetrahymena
thermophila RepID=UPI00006CB60F
Length = 108
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/110 (32%), Positives = 51/110 (46%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M FCP C+N L + N+G N+R C+TC Y + K ++ R+V+ + IS
Sbjct: 1 MNFCPLCANALIIQ--NVGGNNRFSCRTCTYFYPLLKKIETVTYSRMVKDDTIHDISLQK 58
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
++ CP C A Q RS DE T Y C N C H W++
Sbjct: 59 ESLQTDKDMICPACEKRGAYIRLEQDRSLDEGQTQHYICKN--CSHTWKD 106
[213][TOP]
>UniRef100_B6ICU4 Zinc ribbon domain containing protein 1 n=1 Tax=Sus scrofa
RepID=B6ICU4_PIG
Length = 123
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIE----KGVKIKRKQRLVRKEIDPVI 345
++FCP C ++L P G + C C + + K VK + V + +
Sbjct: 14 LDFCPDCGSVL----PLPGTQDAVICTRCGFSINVRDFEGKVVKTSVVFQKVGTAMPMSM 69
Query: 346 SYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
P + RCP C H+ AY Q+RSADE T+FY C N C+ Q +ED
Sbjct: 70 EEGPEFQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN--CKFQEKED 122
[214][TOP]
>UniRef100_Q4DC35 DNA-directed RNA polymerase subunit n=1 Tax=Trypanosoma cruzi
RepID=Q4DC35_TRYCR
Length = 167
Score = 59.7 bits (143), Expect = 1e-07
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVR----KEIDPVI 345
M FCP C +L E P+ N R C +C YV I + L++ E D +
Sbjct: 46 MFFCPFCGTLLLIE-PHHPTN-RFACSSCTYVAPIPSTHLLTVNHSLLKFNKTVEDDANV 103
Query: 346 SYDDMKN-------APTTEVRCPN----CSHDKAAYTEMQIRSADEPATIFYWCLNEKCR 492
+ +K VRC N C ++A Y ++Q+RSADEPAT F+ CL KC
Sbjct: 104 KANGIKTKNEEVDGGQLITVRCQNDEKFCDGNRAHYVQIQMRSADEPATTFFKCL--KCG 161
Query: 493 HQWRED 510
QW++D
Sbjct: 162 FQWKQD 167
[215][TOP]
>UniRef100_Q4CWD9 DNA-directed RNA polymerase subunit n=1 Tax=Trypanosoma cruzi
RepID=Q4CWD9_TRYCR
Length = 122
Score = 59.7 bits (143), Expect = 1e-07
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVR----KEIDPVI 345
M FCP C +L E P+ N R C +C YV I + L++ E D +
Sbjct: 1 MFFCPFCGTLLLIE-PHHPTN-RFACSSCTYVAPIPSTHLLTVNHSLLKFNKTVEDDANV 58
Query: 346 SYDDMKN-------APTTEVRCPN----CSHDKAAYTEMQIRSADEPATIFYWCLNEKCR 492
+ +K VRC N C ++A Y ++Q+RSADEPAT F+ CL KC
Sbjct: 59 KANGIKTKNEEVDGGQLITVRCQNDEKFCDGNRAHYVQIQMRSADEPATTFFKCL--KCG 116
Query: 493 HQWRED 510
QW++D
Sbjct: 117 FQWKQD 122
[216][TOP]
>UniRef100_Q18HM2 DNA-directed RNA polymerase subunit M1 n=1 Tax=Haloquadratum
walsbyi DSM 16790 RepID=Q18HM2_HALWD
Length = 107
Score = 59.7 bits (143), Expect = 1e-07
Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEID--PVISY 351
M+FC C +M+K + + C C ++ ++E V
Sbjct: 1 MKFCDECGSMMKKQ------DDIWTCSDCGAEELADEADSATMTSTESQQESGAVDVSDI 54
Query: 352 DDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
DD PTT V CP C +D A Y QIR+ADE T F+ C +C H+WRED
Sbjct: 55 DDADIGPTTTVICPECGNDTARYEMKQIRAADESETRFFTC--TECNHKWRED 105
[217][TOP]
>UniRef100_A2SQL6 DNA-directed RNA polymerase, subunit M n=1 Tax=Methanocorpusculum
labreanum Z RepID=A2SQL6_METLZ
Length = 96
Score = 59.7 bits (143), Expect = 1e-07
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +1
Query: 238 NSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYD--DMKNAPTTEVRCPNCSHDK 411
+ +L C C Y I K + K+ +E D +I + DM PT ++CPNC H
Sbjct: 5 DGQLCCSKCGYTETITAENKEQMKKVAYMQENDILIVEEGADMGTKPTIAIKCPNCGHGI 64
Query: 412 AAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
A + Q+RSADE F+ C KC+H WRE
Sbjct: 65 AEWWLRQLRSADESEVRFFRC--TKCKHTWRE 94
[218][TOP]
>UniRef100_Q6MFY5 DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Rattus
norvegicus RepID=RPA12_RAT
Length = 123
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEK-GVKIKRKQRLVRKEIDPVI--S 348
++FCP C ++L P G + C C + + G K+ K +V ++ VI S
Sbjct: 14 LDFCPDCGSVL----PLPGVQDTVICPRCGFSIDVRDFGGKVV-KTSVVFNKLGTVIPMS 68
Query: 349 YDD--MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
D+ P + RC C H+ AY Q+RSADE T+FY C+N C+ Q +ED
Sbjct: 69 VDEGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCIN--CKFQEKED 122
[219][TOP]
>UniRef100_UPI0000164DC6 DNA-directed RNA polymerase subunit M n=1 Tax=Thermoplasma
volcanium GSS1 RepID=UPI0000164DC6
Length = 100
Score = 59.3 bits (142), Expect = 2e-07
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP--VISYDD 357
FCP C +++ N R C +C Y + K K ++V K D ++ ++
Sbjct: 2 FCPKCGSLMT------PVNGRYVCPSCGY-----EVSKKKEDLKIVNKSNDKETIMIREE 50
Query: 358 MKNAPT-TEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ P ++ CP C H A Y Q RSADEP T FY C E+C ++WRE
Sbjct: 51 VSAEPLDSDAICPRCHHKGARYVLKQTRSADEPETKFYTC--EECGYRWRE 99
[220][TOP]
>UniRef100_Q9VD81 GM14478p n=1 Tax=Drosophila melanogaster RepID=Q9VD81_DROME
Length = 120
Score = 59.3 bits (142), Expect = 2e-07
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCPSC ++L P + + C C + K + + DP ++ K
Sbjct: 10 FCPSCGSIL----PELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTK 65
Query: 364 -------NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ P E +CP C+HDK +Y +Q+RSADE T+F+ CL KC+ + E+
Sbjct: 66 RESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESEN 119
[221][TOP]
>UniRef100_Q97AQ6 Transcription factor [TFIIS/RPB9] n=1 Tax=Thermoplasma volcanium
RepID=Q97AQ6_THEVO
Length = 106
Score = 59.3 bits (142), Expect = 2e-07
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP--VISYDD 357
FCP C +++ N R C +C Y + K K ++V K D ++ ++
Sbjct: 8 FCPKCGSLMT------PVNGRYVCPSCGY-----EVSKKKEDLKIVNKSNDKETIMIREE 56
Query: 358 MKNAPT-TEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ P ++ CP C H A Y Q RSADEP T FY C E+C ++WRE
Sbjct: 57 VSAEPLDSDAICPRCHHKGARYVLKQTRSADEPETKFYTC--EECGYRWRE 105
[222][TOP]
>UniRef100_Q8TUF5 Archaeal transcription factor S n=1 Tax=Methanosarcina acetivorans
RepID=Q8TUF5_METAC
Length = 104
Score = 59.3 bits (142), Expect = 2e-07
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVK-IKRKQRLVRKEIDPVISYD 354
M+FC C +M+ P G+ C+ C IE K K ++ E+ V+ +
Sbjct: 1 MQFCTKCKSMM---FPKDGN---YHCRKCGNTIPIESDAKGFVSKAKIDDHEV-VVLEGE 53
Query: 355 DMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
PTT V+CP C ++ AA+ Q+RSADE T F+ C KC WRE
Sbjct: 54 QTSGLPTTNVKCPECGNNTAAWWLRQLRSADESETRFFKC--TKCGFTWRE 102
[223][TOP]
>UniRef100_A8MBQ2 Transcription termination factor Tfs n=1 Tax=Caldivirga
maquilingensis IC-167 RepID=A8MBQ2_CALMQ
Length = 115
Score = 59.3 bits (142), Expect = 2e-07
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLF-CQTCPYVCYIEKGVKIKRKQRLVRKEID-PVISY 351
++FCP C +++K P N + C C YV V + + + K + PV+
Sbjct: 7 IKFCPKCGSIMK---PYRNGNKVTWRCPKCGYVEDSSTTVPLVERTVIEHKPDEKPVVLT 63
Query: 352 DDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
N P +V CP C +++A + Q R+ADEP T FY C +C + WRE
Sbjct: 64 KANDNLPKVKVTCPRCGNNEAYFWIQQTRAADEPPTRFYRC--TRCGYTWRE 113
[224][TOP]
>UniRef100_Q98TK0 RNA polymerase III smallest subunit (Fragment) n=1 Tax=Platichthys
flesus RepID=Q98TK0_PLAFE
Length = 87
Score = 58.9 bits (141), Expect = 2e-07
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +1
Query: 244 RLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVIS-YDDMKNAPTTEVRCPNCSHDKAAY 420
R C TCPYV I + V ++ +L KE+D V+ +N +T CP C H +A +
Sbjct: 13 RFACNTCPYVHSITRKVNYRKFPKL--KEVDDVLGGAKAWENVDSTPETCPTCGHLRAYF 70
Query: 421 TEMQIRSADEPATIFY 468
++Q RSADEP T FY
Sbjct: 71 MQIQTRSADEPMTTFY 86
[225][TOP]
>UniRef100_B4HM44 GM23695 n=1 Tax=Drosophila sechellia RepID=B4HM44_DROSE
Length = 120
Score = 58.9 bits (141), Expect = 2e-07
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCPSC ++L P + + C C + K + + DP ++ K
Sbjct: 10 FCPSCGSIL----PELQVKGNVICCNCKQEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTK 65
Query: 364 -------NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ P E +CP C+HDK +Y +Q+RSADE T+F+ CL KC+ + E+
Sbjct: 66 RESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESEN 119
[226][TOP]
>UniRef100_Q9YEZ3 Archaeal transcription factor S n=1 Tax=Aeropyrum pernix
RepID=Q9YEZ3_AERPE
Length = 118
Score = 58.9 bits (141), Expect = 2e-07
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Frame = +1
Query: 175 KMEFCPSCSNMLKFELPNMGHNSRLFCQTCPYV--CYIEKGVKIKRKQRLVRKEIDPVIS 348
+++FCP C +++ + G L C++C Y E + + + + D ++
Sbjct: 4 RIKFCPRCGSIMYPKRD--GARYLLVCKSCGYSEEASREDHQAYRMRVTVEKGPRDKIVV 61
Query: 349 YDDMKNAPTT----EVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
DD V CP C HD+ + MQ RSADEP T FY C ++CR+ WRE
Sbjct: 62 IDDETPVGAQVLKGSVTCPKCGHDEVYFWMMQTRSADEPMTRFYRC--KRCRYTWRE 116
[227][TOP]
>UniRef100_Q8PX24 DNA-directed RNA polymerase subunit M n=1 Tax=Methanosarcina mazei
RepID=Q8PX24_METMA
Length = 107
Score = 58.9 bits (141), Expect = 2e-07
Identities = 35/110 (31%), Positives = 51/110 (46%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
M+FC C +M+ P G+ C+ C IE K + + V+ +
Sbjct: 4 MQFCTKCKSMM---FPKDGN---YHCRKCGSTIPIESDAKNFVSKAKIDDHEVVVLEGEQ 57
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
PTT +CP C ++ AA+ Q+RSADE T F+ C KC + WRE
Sbjct: 58 TSGLPTTNAKCPECGNNTAAWWLRQLRSADESETRFFKC--TKCGYTWRE 105
[228][TOP]
>UniRef100_UPI00018693F6 hypothetical protein BRAFLDRAFT_272471 n=1 Tax=Branchiostoma
floridae RepID=UPI00018693F6
Length = 123
Score = 58.5 bits (140), Expect = 3e-07
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Frame = +1
Query: 181 EFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEK--GVKIK-----RKQRLVRKEIDP 339
+FCP C ++L P G + C+ C + + + GV++K K+ +KE P
Sbjct: 16 DFCPDCGSIL----PLPGREDVVTCKLCGFQVDVTEFDGVEVKTRIIFNKRESAKKEDRP 71
Query: 340 VISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCR 492
+ + P + +CP C H+ YT Q RSADE T+FY C +CR
Sbjct: 72 A----EDTSGPLVDRKCPKCGHEGMTYTTRQTRSADEGQTVFYGC--PRCR 116
[229][TOP]
>UniRef100_B4PKV3 GE24089 n=1 Tax=Drosophila yakuba RepID=B4PKV3_DROYA
Length = 120
Score = 58.5 bits (140), Expect = 3e-07
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCPSC ++L P + + C C + K + + DP ++ K
Sbjct: 10 FCPSCGSIL----PELQVKGNVICCNCRQEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTK 65
Query: 364 -------NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ P E +CP C+HDK +Y +Q+RSADE T+F+ CL KC+ + E+
Sbjct: 66 RESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESEN 119
[230][TOP]
>UniRef100_C8V4B3 RNA polymerase III subunit C11, putative (AFU_orthologue;
AFUA_1G06380) n=2 Tax=Emericella nidulans
RepID=C8V4B3_EMENI
Length = 108
Score = 58.5 bits (140), Expect = 3e-07
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPN------MGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP 339
+ FCP+CSN L + +G N R C+TCPY +E+ K + +KE++
Sbjct: 3 LTFCPNCSNALTISRADPSPKYPLGIN-RFECRTCPYQYALEQAWFEKTPMK--QKEVEA 59
Query: 340 VISYD-DMKNAPTTEVRCP--NCSHDKAAYTEMQIRSADEPATIF 465
V + +NA + +CP C+ D+A + ++QIRSADEP T F
Sbjct: 60 VFGGKAEFENADSMATQCPAEGCNGDRAYFFQLQIRSADEPMTTF 104
[231][TOP]
>UniRef100_Q6L0M3 DNA-directed RNA polymerase subunit M n=1 Tax=Picrophilus torridus
RepID=Q6L0M3_PICTO
Length = 101
Score = 58.5 bits (140), Expect = 3e-07
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP-VISYDDM 360
FCP C +++ N + C++C Y + KG + + ++V K D +I +
Sbjct: 2 FCPKCGSLMT------PSNGKYICRSCGYE--MSKGAE--KSTKIVNKSSDKEIIMIEKE 51
Query: 361 KNAPT--TEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
NA +E CP C H A Y Q RSADEP T FY C C ++WRE
Sbjct: 52 VNAEPLDSEAVCPKCHHVGAYYLLKQTRSADEPETKFYTC--AACGYRWRE 100
[232][TOP]
>UniRef100_C7P2H7 Transcription termination factor Tfs n=1 Tax=Halomicrobium
mukohataei DSM 12286 RepID=C7P2H7_HALMD
Length = 107
Score = 58.5 bits (140), Expect = 3e-07
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLV------RKEIDP 339
MEFC C +M+K E + C +C E+ + +V EI
Sbjct: 1 MEFCDDCGSMMKAE------DGVWVCGSCG----AERARDAADESSMVTTQGQEESEIVD 50
Query: 340 VISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ PTT+ CP C +D+A + QIR+ADE T F+ C +C H+WRED
Sbjct: 51 TSEVEAEDMGPTTDAHCPECGNDRAFWEMKQIRAADESETRFFTC--TECDHKWRED 105
[233][TOP]
>UniRef100_B4NHN6 GK13021 n=1 Tax=Drosophila willistoni RepID=B4NHN6_DROWI
Length = 121
Score = 58.2 bits (139), Expect = 4e-07
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCPSC ++L P + + C C E K + + DP ++ K
Sbjct: 10 FCPSCGSIL----PPLQVKGNVICYNCKEELLPEVYSGEKSEFTIQFNTYDPSKVFNRAK 65
Query: 364 --------NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ P E +CP C +DK +Y +Q+RSADE T+F+ CL KC+++ E+
Sbjct: 66 RESESSEADGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCL--KCKYKESEN 120
[234][TOP]
>UniRef100_B3NZY6 GG11044 n=1 Tax=Drosophila erecta RepID=B3NZY6_DROER
Length = 120
Score = 58.2 bits (139), Expect = 4e-07
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCPSC ++L P + + C C + K + + DP + K
Sbjct: 10 FCPSCGSIL----PELQVKGNVICCNCRQEFQPDVYSGEKSEFTIHFNTYDPSKVFSRTK 65
Query: 364 -------NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ P E +CP C+HDK +Y +Q+RSADE T+F+ CL KC+ + E+
Sbjct: 66 RESEADADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESEN 119
[235][TOP]
>UniRef100_C5E1W0 DNA-directed RNA polymerase subunit n=1 Tax=Zygosaccharomyces
rouxii CBS 732 RepID=C5E1W0_ZYGRC
Length = 125
Score = 58.2 bits (139), Expect = 4e-07
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTC----PYVCYIEKGV-----------KIKRKQRL 318
FC C ++L + P+ S + CQ C P + V +K KQ +
Sbjct: 9 FCLDCGDLL--DNPSAVQGSEIECQQCQARYPKSKFSNLKVVTSTADDAFPSSLKMKQSV 66
Query: 319 VRKEIDPVISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQ 498
V+ I DD+ T + +CP C HD+ Y +Q+RSADE AT+FY C + C ++
Sbjct: 67 VKTSI----GRDDLGEGATIKEKCPKCGHDEMHYHTLQLRSADEGATVFYTCTS--CGYK 120
Query: 499 WR 504
+R
Sbjct: 121 YR 122
[236][TOP]
>UniRef100_C3NFY6 Transcription termination factor Tfs n=1 Tax=Sulfolobus islandicus
Y.N.15.51 RepID=C3NFY6_SULIN
Length = 111
Score = 58.2 bits (139), Expect = 4e-07
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLF-CQTCPYVCYI-EKGVKIKRKQRLVRKEIDPVISY 351
M+FCP C++M+ +P + ++ C C Y + E + + K + KE ++
Sbjct: 1 MKFCPKCNSMM---VPKKSNGKNIYRCTKCGYEEEVPETTIVVTSKVKHSIKEKTLILEE 57
Query: 352 DDMKNAPTT--EVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
++M + V CP+C +D+A + +Q R ADEP T FY C KC WRE
Sbjct: 58 EEMPSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKC--TKCGKVWRE 109
[237][TOP]
>UniRef100_B5ID90 Transcription factor S n=1 Tax=Aciduliprofundum boonei T469
RepID=B5ID90_9EURY
Length = 94
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 253 CQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMKNAPTTE-VRCPNCSHDKAAYTEM 429
C +C Y I+K + KE+ + S +++K P E V CP C H A +
Sbjct: 10 CSSCGYEMPIDKDKSQEIVAEAKEKEMIVISSEEELKALPYDESVICPKCGHAGAHWMLQ 69
Query: 430 QIRSADEPATIFYWCLNEKCRHQWRE 507
Q R+ADEP T FY C KC H+WRE
Sbjct: 70 QTRAADEPETRFYIC--PKCGHRWRE 93
[238][TOP]
>UniRef100_Q4N244 Putative uncharacterized protein n=1 Tax=Theileria parva
RepID=Q4N244_THEPA
Length = 108
Score = 57.8 bits (138), Expect = 6e-07
Identities = 33/108 (30%), Positives = 52/108 (48%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCP C ++L FE + S C C Y + K + V++ + ++ K
Sbjct: 4 FCPLCHSILYFE-QKPENKSSFSCLRCTYNLPVTKDYHKETVCTNVKEAGKTLFEANEFK 62
Query: 364 NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+AP CP C++ +A + +Q RSADEP T F+ C C +W+E
Sbjct: 63 HAPRIPAVCPACNNKEAYFMSIQTRSADEPMTQFFVC--TACLKRWKE 108
[239][TOP]
>UniRef100_B3LVZ2 GF17465 n=1 Tax=Drosophila ananassae RepID=B3LVZ2_DROAN
Length = 121
Score = 57.8 bits (138), Expect = 6e-07
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDDMK 363
FCPSC ++L P + + C C + K + DP ++ K
Sbjct: 10 FCPSCGSIL----PTLQVKGNVMCYNCKKEFLPDVYSGEKTDFIIQFNTYDPSKVFNRTK 65
Query: 364 --------NAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ P E +CP C+HDK +Y +Q+RSADE T+F+ CL KC+ + E+
Sbjct: 66 RESESSEADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCL--KCKFKESEN 120
[240][TOP]
>UniRef100_A5DAY3 DNA-directed RNA polymerase subunit n=1 Tax=Pichia guilliermondii
RepID=A5DAY3_PICGU
Length = 123
Score = 57.8 bits (138), Expect = 6e-07
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKG---VKIKRKQ---------RLVRK 327
FC SC N+L G N+++ C+ C Y G +K+ + +L R
Sbjct: 9 FCTSCGNLLDAA----GSNTQIECKVCT-ASYPASGFANLKVVTQSAEDAFPSQLKLKRS 63
Query: 328 EIDPVISYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWR 504
+ ++ D+M T + +CP C +++ Y +Q+RSADE AT+FY C C +++R
Sbjct: 64 VVKTSLNKDEMDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTG--CGYRFR 120
[241][TOP]
>UniRef100_Q9HJG3 Probable transcription-associated protein TFIIS n=1
Tax=Thermoplasma acidophilum RepID=Q9HJG3_THEAC
Length = 100
Score = 57.8 bits (138), Expect = 6e-07
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP--VISYDD 357
FCP C +++ N + C +C Y K K ++V K D ++ ++
Sbjct: 2 FCPKCGSLMT------PVNGKYVCPSCGYEIS-----KNKETIKIVSKSADKETIMIKEE 50
Query: 358 MKNAPT-TEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
+ P ++ CP C H A Y Q RSADEP T FY C E+C ++WRE
Sbjct: 51 VSAEPLDSDAVCPRCHHKGARYVLKQTRSADEPETKFYTC--EECGYRWRE 99
[242][TOP]
>UniRef100_Q12U17 DNA-directed RNA polymerase subunit M n=1 Tax=Methanococcoides
burtonii DSM 6242 RepID=Q12U17_METBU
Length = 103
Score = 57.8 bits (138), Expect = 6e-07
Identities = 37/110 (33%), Positives = 52/110 (47%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 357
MEFCP C +M+ P G L C+ C Y + + +E+ V+ D
Sbjct: 1 MEFCPKCKSMMH---PIEG---TLKCRKCGYEKVKDAAPDLLSTSSREEREVT-VLEGDT 53
Query: 358 MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
PTT RC C ++ A + Q+RSADE T F+ C+ KC + WRE
Sbjct: 54 DIGLPTTTARCEECGNNTAYWWLRQLRSADESETRFFKCI--KCSYTWRE 101
[243][TOP]
>UniRef100_B9LMI0 Transcription factor TFIIS n=1 Tax=Halorubrum lacusprofundi ATCC
49239 RepID=B9LMI0_HALLT
Length = 108
Score = 57.8 bits (138), Expect = 6e-07
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQT--CPYVCYIEKGVKIKRKQRLVRKEIDPVISY 351
M+FC C +M+K + C + C + G + V E+ V
Sbjct: 1 MKFCDECGSMMK----SGEGEDHWVCSSEDCGNELGRDNGDDEWTTESQVESEVIDVSDA 56
Query: 352 DDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+D K P T CP C +D+A + QIRSADE T F+ C +C H+WRED
Sbjct: 57 ED-KGLPKTTAHCPECGNDRAYWYMQQIRSADESETRFFVC--TECEHKWRED 106
[244][TOP]
>UniRef100_B4K8D8 GI22183 n=1 Tax=Drosophila mojavensis RepID=B4K8D8_DROMO
Length = 121
Score = 57.4 bits (137), Expect = 7e-07
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDP------VI 345
FCPSC ++L P + +FC C + + + + DP V
Sbjct: 10 FCPSCGSIL----PPLQVKGNVFCYNCKQEFSPDVYIGETSEYTIHFNSFDPRKISKKVT 65
Query: 346 SYDDMKNA--PTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ A P E +CP C +DK +Y +Q+RSADE T+F+ CL KC+++ E+
Sbjct: 66 QKSEAAEADGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCL--KCKYKESEN 120
[245][TOP]
>UniRef100_B3TAR2 Putative transcription factor S-II (TFIIS) n=1 Tax=uncultured
marine crenarchaeote HF4000_APKG8G15 RepID=B3TAR2_9ARCH
Length = 106
Score = 57.4 bits (137), Expect = 7e-07
Identities = 42/115 (36%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVK-IKRKQRLVRKEIDPVISYD 354
MEFCP C LK + N L C C YV EK K IK K E V+
Sbjct: 1 MEFCPKCEVRLKND------NGLLSCPKCKYVK--EKTDKSIKEKPEETNSEF-LVMDES 51
Query: 355 DMKNAP----TTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D+ A T ++ C C + + +Q RSADEP T FY C KC + WR+
Sbjct: 52 DLSQAKGLESTIKIDCEKCHNQEGVCWSLQTRSADEPETRFYRC--TKCNYTWRD 104
[246][TOP]
>UniRef100_UPI00005A584C PREDICTED: similar to zinc ribbon domain containing, 1 n=1
Tax=Canis lupus familiaris RepID=UPI00005A584C
Length = 498
Score = 57.0 bits (136), Expect = 9e-07
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTC----PYVCYIEKGVKIKRKQRLVRKEIDPVI 345
++FCP C ++L P G + C C P + K V+ + V + +
Sbjct: 389 LDFCPDCGSVL----PLPGAQDAVTCVRCGFGVPVRDFEGKVVRTRIVFNQVGTAVPAPV 444
Query: 346 SYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ P + RC C H+ AY Q+RSADE T+FY C + CR Q +ED
Sbjct: 445 QEEPELQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTS--CRFQEKED 497
[247][TOP]
>UniRef100_UPI00004BF817 DNA-directed RNA polymerase I subunit RPA12 (Zinc ribbon domain-
containing protein 1). n=1 Tax=Canis lupus familiaris
RepID=UPI00004BF817
Length = 126
Score = 57.0 bits (136), Expect = 9e-07
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTC----PYVCYIEKGVKIKRKQRLVRKEIDPVI 345
++FCP C ++L P G + C C P + K V+ + V + +
Sbjct: 17 LDFCPDCGSVL----PLPGAQDAVTCVRCGFGVPVRDFEGKVVRTRIVFNQVGTAVPAPV 72
Query: 346 SYDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
+ P + RC C H+ AY Q+RSADE T+FY C + CR Q +ED
Sbjct: 73 QEEPELQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTS--CRFQEKED 125
[248][TOP]
>UniRef100_C1BNB1 DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Caligus
rogercresseyi RepID=C1BNB1_9MAXI
Length = 120
Score = 57.0 bits (136), Expect = 9e-07
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Frame = +1
Query: 184 FCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLV---RKEIDPV--IS 348
FC C ++L P++ L C C + + + + + R+++D ++
Sbjct: 12 FCSDCGSIL----PDVPSRGPLHCVACGSEADVSQFLDKEITYTIEFNKREDLDVARRVN 67
Query: 349 YDDMKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 510
D+ + PT E CPNC + K +Y +Q+RSADE T+F+ CL KC+ + E+
Sbjct: 68 EDNSSSEPTVERTCPNCGYSKMSYAALQLRSADEGQTVFFTCL--KCKFKETEN 119
[249][TOP]
>UniRef100_B4JS70 DNA-directed RNA polymerase subunit n=1 Tax=Drosophila grimshawi
RepID=B4JS70_DROGR
Length = 129
Score = 57.0 bits (136), Expect = 9e-07
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISY-D 354
+ FC C+NML + C+ C Y + K + EID +
Sbjct: 18 IRFCQECNNMLYPKEDKDNKTLMYACRNCDYKQEADSNCIYVNK---IMHEIDELTHIVP 74
Query: 355 DMKNAPTT----EVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
D+ + PT + CP CSH +A + + Q R A+E ++Y C N+ C H+W E
Sbjct: 75 DVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
[250][TOP]
>UniRef100_Q980K2 DNA-directed RNA polymerase, subunit M (RpoM-1) n=1 Tax=Sulfolobus
solfataricus RepID=Q980K2_SULSO
Length = 114
Score = 57.0 bits (136), Expect = 9e-07
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Frame = +1
Query: 178 MEFCPSCSNMLKFELPNMGHNSRLF-CQTCPYVCYI-EKGVKIKRKQRLVRKEIDPVISY 351
++FCP C++M+ +P + ++ C C Y + E + + K + KE V+
Sbjct: 4 VKFCPKCNSMM---VPKKSNGKNVYRCTKCGYEKEVPETTIVVTSKVKHSIKEKTLVLEE 60
Query: 352 DDMKNAPTT--EVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 507
++M + V CP+C +D+A + +Q R ADEP T FY C KC WRE
Sbjct: 61 EEMPSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKC--TKCGKVWRE 112