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[1][TOP]
>UniRef100_B2B9K0 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B2B9K0_GOSHI
Length = 1110
Score = 167 bits (424), Expect = 4e-40
Identities = 81/119 (68%), Positives = 92/119 (77%), Gaps = 3/119 (2%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGG---DDAYAKASAWYYVT 402
SG IMKMS+SFTK+RDAE+I+MAVRSLRKEAR+WFN+ DDAYAKASAWYYVT
Sbjct: 992 SGGIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVT 1051
Query: 401 YHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNADQSLEYSFSHRLHLN 225
YHHSYWG Y+EGMNRDH+LSFPWCVY L+QIKKEK A SLE+ F HL+
Sbjct: 1052 YHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHLH 1110
[2][TOP]
>UniRef100_B3SND7 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B3SND7_GOSHI
Length = 1110
Score = 164 bits (416), Expect = 3e-39
Identities = 81/118 (68%), Positives = 91/118 (77%), Gaps = 3/118 (2%)
Frame = -3
Query: 569 GNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGG---DDAYAKASAWYYVTY 399
G IMKMS+SFTK+RDAEAI+MAVRSLRKEAR+WFN+ DDAYAKASAWYYVTY
Sbjct: 993 GGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTY 1052
Query: 398 HHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNADQSLEYSFSHRLHLN 225
H SYWG Y+EGMNRDH+LSFPWCVY L+QIKKEK A SLE+ F LHL+
Sbjct: 1053 HPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHLH 1110
[3][TOP]
>UniRef100_B9HJH7 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH7_POPTR
Length = 1133
Score = 162 bits (410), Expect = 2e-38
Identities = 79/120 (65%), Positives = 93/120 (77%), Gaps = 4/120 (3%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGG---GGDDAYAKASAWYYVT 402
SG+ MKMSKSFTK+RDAEAI MAVRSL+KEAR+WFN+ G DD AKASAWY+VT
Sbjct: 1014 SGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVT 1073
Query: 401 YHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNAD-QSLEYSFSHRLHLN 225
YHH+YWGCY+EGMNRDH+LSFPWCVY L+QIK+ A RR+ S+E FS LHL+
Sbjct: 1074 YHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHLS 1133
[4][TOP]
>UniRef100_UPI000198295F PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI000198295F
Length = 1109
Score = 150 bits (380), Expect = 5e-35
Identities = 69/98 (70%), Positives = 80/98 (81%), Gaps = 3/98 (3%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGG---GGDDAYAKASAWYYVT 402
SG+IMKMSKSF KR+DAEAI +AVRSLRKEARTWFN G G DD YA ASAWY+VT
Sbjct: 1002 SGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVT 1061
Query: 401 YHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIA 288
YH YWGCY+EGM DH+LSFPWCVY L+QIK++K++
Sbjct: 1062 YHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMS 1099
[5][TOP]
>UniRef100_A7P3W3 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W3_VITVI
Length = 1076
Score = 150 bits (380), Expect = 5e-35
Identities = 69/98 (70%), Positives = 80/98 (81%), Gaps = 3/98 (3%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGG---GGDDAYAKASAWYYVT 402
SG+IMKMSKSF KR+DAEAI +AVRSLRKEARTWFN G G DD YA ASAWY+VT
Sbjct: 969 SGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVT 1028
Query: 401 YHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIA 288
YH YWGCY+EGM DH+LSFPWCVY L+QIK++K++
Sbjct: 1029 YHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMS 1066
[6][TOP]
>UniRef100_Q75ZN6 RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata
RepID=Q75ZN6_VIGUN
Length = 257
Score = 150 bits (379), Expect = 7e-35
Identities = 70/99 (70%), Positives = 82/99 (82%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SGNI+K+SK F KRRDAEAI AV SLRK+AR+WFN+ G GDD YAKASAWY+VTYH
Sbjct: 161 SGNIIKLSKCFNKRRDAEAINKAVTSLRKDARSWFNE--GNNGDDEYAKASAWYHVTYHP 218
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRR 276
SYWGCY++GM RDHYLSFPWCV+ L+QIKK+ +NRR
Sbjct: 219 SYWGCYNQGMGRDHYLSFPWCVFPQLLQIKKK--VFNRR 255
[7][TOP]
>UniRef100_A5ATA5 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5ATA5_VITVI
Length = 697
Score = 150 bits (378), Expect = 9e-35
Identities = 68/98 (69%), Positives = 80/98 (81%), Gaps = 3/98 (3%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGG---GGDDAYAKASAWYYVT 402
SG++MKMSKSF KR+DAEAI +AVRSLRKEARTWFN G G DD YA ASAWY+VT
Sbjct: 546 SGSLMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVT 605
Query: 401 YHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIA 288
YH YWGCY+EGM DH+LSFPWCVY L+QIK++K++
Sbjct: 606 YHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMS 643
[8][TOP]
>UniRef100_A7P3W5 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W5_VITVI
Length = 1121
Score = 145 bits (367), Expect = 2e-33
Identities = 71/118 (60%), Positives = 87/118 (73%), Gaps = 3/118 (2%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFN---DSSGGGGDDAYAKASAWYYVT 402
SG+IM+MSKSF +R+DAEAI +AV+SLRKEARTWFN + DD YAKASAWY+VT
Sbjct: 1004 SGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVT 1063
Query: 401 YHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNADQSLEYSFSHRLHL 228
YH YWGCY+EGM+RDH+LSFPWCVY L+ K++K++ R SLE S L L
Sbjct: 1064 YHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMS-GRSLHLSSLERRLSQGLRL 1120
[9][TOP]
>UniRef100_A5AM83 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5AM83_VITVI
Length = 654
Score = 145 bits (367), Expect = 2e-33
Identities = 71/118 (60%), Positives = 87/118 (73%), Gaps = 3/118 (2%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFN---DSSGGGGDDAYAKASAWYYVT 402
SG+IM+MSKSF +R+DAEAI +AV+SLRKEARTWFN + DD YAKASAWY+VT
Sbjct: 537 SGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVT 596
Query: 401 YHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNADQSLEYSFSHRLHL 228
YH YWGCY+EGM+RDH+LSFPWCVY L+ K++K++ R SLE S L L
Sbjct: 597 YHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMS-GRSLHLSSLERRLSQGLRL 653
[10][TOP]
>UniRef100_Q6L3W8 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3W8_SOLDE
Length = 1139
Score = 139 bits (351), Expect = 1e-31
Identities = 70/116 (60%), Positives = 87/116 (75%), Gaps = 1/116 (0%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI++AVR+LRKEARTWF + DD KASAWY+VTYH
Sbjct: 1026 SGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDI--DDMLPKASAWYHVTYHP 1083
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNAD-QSLEYSFSHRLHL 228
+YWGCY++G+ RDH++SFPWCVY L+QIKKEK A NR + SL SH+L L
Sbjct: 1084 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEK-ALNRPVLNLSSLRAQLSHKLVL 1138
[11][TOP]
>UniRef100_Q6L3P6 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P6_SOLDE
Length = 1180
Score = 139 bits (351), Expect = 1e-31
Identities = 70/116 (60%), Positives = 87/116 (75%), Gaps = 1/116 (0%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI++AVR+LRKEARTWF + DD KASAWY+VTYH
Sbjct: 1067 SGGIMKASKTFDRRKDAEAISVAVRALRKEARTWFKRRNDI--DDMLPKASAWYHVTYHP 1124
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNAD-QSLEYSFSHRLHL 228
+YWGCY++G+ RDH++SFPWCVY L+QIKKEK A NR + SL SH+L L
Sbjct: 1125 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEK-ALNRPVLNLSSLRAQLSHKLVL 1179
[12][TOP]
>UniRef100_Q6L3V2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum demissum
RepID=Q6L3V2_SOLDE
Length = 963
Score = 139 bits (350), Expect = 2e-31
Identities = 70/116 (60%), Positives = 87/116 (75%), Gaps = 1/116 (0%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI++AVR+LRKEARTWF + DD KASAWY+VTYH
Sbjct: 850 SGGIMKASKTFDRRKDAEAISVAVRALRKEARTWFKRRNDI--DDMLPKASAWYHVTYHP 907
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNAD-QSLEYSFSHRLHL 228
+YWGCY++G+ RDH++SFPWCVY L+QIKKEK A NR + SL SH+L L
Sbjct: 908 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEK-ARNRPVLNLSSLRAQLSHKLVL 962
[13][TOP]
>UniRef100_A4UV17 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV17_SOLTU
Length = 1115
Score = 139 bits (350), Expect = 2e-31
Identities = 70/116 (60%), Positives = 87/116 (75%), Gaps = 1/116 (0%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI++AVR+LRKEARTWF + DD KASAWY+VTYH
Sbjct: 1002 SGGIMKASKTFDRRKDAEAISVAVRALRKEARTWFKRRNDI--DDMLPKASAWYHVTYHP 1059
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNAD-QSLEYSFSHRLHL 228
+YWGCY++G+ RDH++SFPWCVY L+QIKKEK A NR + SL SH+L L
Sbjct: 1060 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEK-ARNRPVLNLSSLRAQLSHKLVL 1114
[14][TOP]
>UniRef100_A4UBI7 Putative RNA-directed RNA polymerase 1 n=1 Tax=Nicotiana attenuata
RepID=A4UBI7_9SOLA
Length = 1044
Score = 138 bits (347), Expect = 3e-31
Identities = 63/93 (67%), Positives = 75/93 (80%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG +MK SK+F +R+DAEAI +AVRSLRKEARTWF S DD AKASAWY+VTYHH
Sbjct: 931 SGGVMKASKTFDRRKDAEAIGVAVRSLRKEARTWFKKRSDI--DDMLAKASAWYHVTYHH 988
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
+YWG Y+EG+ RDH++SFPWCVY L+QIKK K
Sbjct: 989 TYWGLYNEGLRRDHFISFPWCVYDQLIQIKKAK 1021
[15][TOP]
>UniRef100_Q6L447 RNA-directed RNA polymerase-like, putative n=1 Tax=Solanum demissum
RepID=Q6L447_SOLDE
Length = 1137
Score = 136 bits (342), Expect = 1e-30
Identities = 61/93 (65%), Positives = 76/93 (81%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI++AVR+LRKEARTWF + DD KASAWY+VTYH
Sbjct: 1024 SGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDI--DDMLPKASAWYHVTYHP 1081
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
+YWGCY++G+ RDH++SFPWCVY L+QIKKEK
Sbjct: 1082 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEK 1114
[16][TOP]
>UniRef100_Q6L3P3 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P3_SOLDE
Length = 1021
Score = 136 bits (342), Expect = 1e-30
Identities = 61/93 (65%), Positives = 76/93 (81%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI++AVR+LRKEARTWF + DD KASAWY+VTYH
Sbjct: 908 SGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDI--DDMLPKASAWYHVTYHP 965
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
+YWGCY++G+ RDH++SFPWCVY L+QIKKEK
Sbjct: 966 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEK 998
[17][TOP]
>UniRef100_Q0KIR2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum demissum
RepID=Q0KIR2_SOLDE
Length = 963
Score = 136 bits (342), Expect = 1e-30
Identities = 61/93 (65%), Positives = 76/93 (81%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI++AVR+LRKEARTWF + DD KASAWY+VTYH
Sbjct: 850 SGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRHNDI--DDMLPKASAWYHVTYHP 907
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
+YWGCY++G+ RDH++SFPWCVY L+QIKKEK
Sbjct: 908 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEK 940
[18][TOP]
>UniRef100_Q0KIK9 RNA-directed RNA polymerase, putative n=1 Tax=Solanum tuberosum
RepID=Q0KIK9_SOLTU
Length = 1050
Score = 136 bits (342), Expect = 1e-30
Identities = 61/93 (65%), Positives = 76/93 (81%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI++AVR+LRKEARTWF + DD KASAWY+VTYH
Sbjct: 937 SGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDI--DDMLPKASAWYHVTYHP 994
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
+YWGCY++G+ RDH++SFPWCVY L+QIKKEK
Sbjct: 995 TYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEK 1027
[19][TOP]
>UniRef100_C1I213 RNA-dependent RNA polymerase n=1 Tax=Nicotiana glutinosa
RepID=C1I213_NICGU
Length = 1117
Score = 136 bits (342), Expect = 1e-30
Identities = 62/93 (66%), Positives = 75/93 (80%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DA+AI +AVRSLRKEARTWF S DD AKASAWY+VTYHH
Sbjct: 1004 SGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWFKRRSDI--DDMLAKASAWYHVTYHH 1061
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
+YWG Y+EG+ RDH++SFPWC+Y L+QIKK K
Sbjct: 1062 TYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAK 1094
[20][TOP]
>UniRef100_Q9ZRY7 RNA-directed RNA polymerase n=1 Tax=Nicotiana tabacum
RepID=Q9ZRY7_TOBAC
Length = 1116
Score = 134 bits (337), Expect = 5e-30
Identities = 62/93 (66%), Positives = 73/93 (78%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI +AVR LRKEAR WF S DD AKASAWY+VTYHH
Sbjct: 1003 SGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRRSDI--DDMLAKASAWYHVTYHH 1060
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
+YWG Y+EG+ RDH++SFPWCVY L+QIKK K
Sbjct: 1061 TYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAK 1093
[21][TOP]
>UniRef100_Q9ZR58 RNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum
RepID=Q9ZR58_SOLLC
Length = 1114
Score = 134 bits (337), Expect = 5e-30
Identities = 68/116 (58%), Positives = 85/116 (73%), Gaps = 1/116 (0%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI++AVR+LRKEAR WF + DD KASAWY+VTYH
Sbjct: 1001 SGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKRRNDI--DDMLPKASAWYHVTYHP 1058
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNAD-QSLEYSFSHRLHL 228
+YWGCY++G+ R H++SFPWCVY L+QIKK+K A NR + SL SHRL L
Sbjct: 1059 TYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDK-ARNRPVLNLSSLRAQLSHRLVL 1113
[22][TOP]
>UniRef100_B9HJH5 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH5_POPTR
Length = 1139
Score = 133 bits (335), Expect = 8e-30
Identities = 61/93 (65%), Positives = 72/93 (77%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG+IMK+ KSF K+RD ++I ++RSLRK+AR WF D S DD YAKASAWYYVTYH
Sbjct: 1024 SGSIMKVGKSFDKKRDFDSINYSIRSLRKQARAWF-DESDNSPDDLYAKASAWYYVTYHP 1082
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
SYWG Y+EGMNR H+LSFPWC Y L+ IKK K
Sbjct: 1083 SYWGRYNEGMNRVHFLSFPWCFYDKLIDIKKGK 1115
[23][TOP]
>UniRef100_Q9LQV2 F10B6.19 n=1 Tax=Arabidopsis thaliana RepID=Q9LQV2_ARATH
Length = 1107
Score = 129 bits (323), Expect = 2e-28
Identities = 65/106 (61%), Positives = 78/106 (73%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IM+MSKSFTKRRDAE+I AVR+LRKE + FN S + A KASAWY+VTYH
Sbjct: 997 SGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENESA--KASAWYHVTYHS 1054
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNADQSLE 255
SYWG Y+EG+NRDH+LSF WCVY LV+IKK + RR ++LE
Sbjct: 1055 SYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNL--GRRQRQETLE 1098
[24][TOP]
>UniRef100_Q8H1K9 RNA-dependent RNA polymerase 1 n=1 Tax=Arabidopsis thaliana
RepID=Q8H1K9_ARATH
Length = 1107
Score = 129 bits (323), Expect = 2e-28
Identities = 65/106 (61%), Positives = 78/106 (73%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IM+MSKSFTKRRDAE+I AVR+LRKE + FN S + A KASAWY+VTYH
Sbjct: 997 SGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENESA--KASAWYHVTYHS 1054
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIAWNRRNADQSLE 255
SYWG Y+EG+NRDH+LSF WCVY LV+IKK + RR ++LE
Sbjct: 1055 SYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNL--GRRQRQETLE 1098
[25][TOP]
>UniRef100_C7F747 Putative RNA-dependent RNA polymerase n=1 Tax=Zea mays
RepID=C7F747_MAIZE
Length = 1108
Score = 128 bits (321), Expect = 4e-28
Identities = 61/93 (65%), Positives = 72/93 (77%), Gaps = 2/93 (2%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGG--GGDDAYAKASAWYYVTY 399
SG I+KM+K+FTK DA+AI MAVRSLRKEAR+WFN+ S G G D AKASAWY+VTY
Sbjct: 1001 SGCILKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEMSTGEDGQDAMEAKASAWYHVTY 1060
Query: 398 HHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKK 300
H YWG Y+EG +R H +SFPWCVY LV IK+
Sbjct: 1061 HQQYWGSYNEGYDRPHLISFPWCVYDKLVAIKQ 1093
[26][TOP]
>UniRef100_Q9ZRX3 RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida
RepID=Q9ZRX3_PETHY
Length = 775
Score = 126 bits (317), Expect = 1e-27
Identities = 58/83 (69%), Positives = 67/83 (80%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +RRDAEAI +AVRSLRKEARTWF S DD AKASAWY+V YH
Sbjct: 694 SGGIMKASKTFDRRRDAEAIGVAVRSLRKEARTWFKRRSDI--DDLLAKASAWYHVAYHP 751
Query: 392 SYWGCYDEGMNRDHYLSFPWCVY 324
+YWGCY+EG+ RDH++SFPWCVY
Sbjct: 752 TYWGCYNEGLKRDHFISFPWCVY 774
[27][TOP]
>UniRef100_Q6RFI0 RNA-directed RNA polymerase 1 n=1 Tax=Hordeum vulgare subsp. vulgare
RepID=Q6RFI0_HORVD
Length = 1115
Score = 124 bits (311), Expect = 5e-27
Identities = 59/98 (60%), Positives = 75/98 (76%), Gaps = 5/98 (5%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWF----NDSSGGGGDDAYAKASAWYYV 405
SG I+KM+K+FTK+ DA+AI +AV+SLRKEAR+WF +D SG G AKASAWY+V
Sbjct: 998 SGCILKMAKNFTKKSDADAIRLAVKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHV 1057
Query: 404 TYHHSYWGCYDEGM-NRDHYLSFPWCVYSLLVQIKKEK 294
TYH YWGCY+EG +R H +SFPWCVY L+ IK++K
Sbjct: 1058 TYHPQYWGCYNEGYDHRPHLISFPWCVYDKLILIKQKK 1095
[28][TOP]
>UniRef100_B9F2V8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group
RepID=B9F2V8_ORYSJ
Length = 1027
Score = 124 bits (311), Expect = 5e-27
Identities = 56/97 (57%), Positives = 76/97 (78%), Gaps = 4/97 (4%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFN----DSSGGGGDDAYAKASAWYYV 405
SG I+KM+K+FTK+ DA+AI +AVRSLRKEAR+ F+ D +G G D + AKASAWY+V
Sbjct: 913 SGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHV 972
Query: 404 TYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
TYH +WGCY+EG R H++SFPWC+Y L++IK+ +
Sbjct: 973 TYHPEFWGCYNEGYERPHFISFPWCIYEKLLRIKQRR 1009
[29][TOP]
>UniRef100_A2X9D0 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2X9D0_ORYSI
Length = 1067
Score = 124 bits (311), Expect = 5e-27
Identities = 56/97 (57%), Positives = 76/97 (78%), Gaps = 4/97 (4%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFN----DSSGGGGDDAYAKASAWYYV 405
SG I+KM+K+FTK+ DA+AI +AVRSLRKEAR+ F+ D +G G D + AKASAWY+V
Sbjct: 953 SGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHV 1012
Query: 404 TYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
TYH +WGCY+EG R H++SFPWC+Y L++IK+ +
Sbjct: 1013 TYHPEFWGCYNEGYERPHFISFPWCIYEKLLRIKQRR 1049
[30][TOP]
>UniRef100_Q0DXS3 Probable RNA-dependent RNA polymerase 1 n=1 Tax=Oryza sativa
Japonica Group RepID=RDR1_ORYSJ
Length = 740
Score = 124 bits (311), Expect = 5e-27
Identities = 56/97 (57%), Positives = 76/97 (78%), Gaps = 4/97 (4%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFN----DSSGGGGDDAYAKASAWYYV 405
SG I+KM+K+FTK+ DA+AI +AVRSLRKEAR+ F+ D +G G D + AKASAWY+V
Sbjct: 626 SGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHV 685
Query: 404 TYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
TYH +WGCY+EG R H++SFPWC+Y L++IK+ +
Sbjct: 686 TYHPEFWGCYNEGYERPHFISFPWCIYEKLLRIKQRR 722
[31][TOP]
>UniRef100_B5M060 RNA-directed RNA polymerase 1b n=1 Tax=Hordeum vulgare
RepID=B5M060_HORVU
Length = 1115
Score = 122 bits (307), Expect = 1e-26
Identities = 58/98 (59%), Positives = 75/98 (76%), Gaps = 5/98 (5%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWF----NDSSGGGGDDAYAKASAWYYV 405
SG I+KM+K+FTK+ DA+AI +AV+SLRKEAR+WF +D SG G AKASAWY+V
Sbjct: 998 SGCILKMAKNFTKKSDADAIRLAVKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHV 1057
Query: 404 TYHHSYWGCYDEGM-NRDHYLSFPWCVYSLLVQIKKEK 294
TYH YWGCY++G +R H +SFPWCVY L+ IK++K
Sbjct: 1058 TYHPQYWGCYNKGYDHRPHLISFPWCVYDKLILIKQKK 1095
[32][TOP]
>UniRef100_Q6RFH9 RNA-directed RNA polymerase 2 n=1 Tax=Hordeum vulgare subsp. vulgare
RepID=Q6RFH9_HORVD
Length = 1115
Score = 120 bits (300), Expect = 1e-25
Identities = 56/97 (57%), Positives = 72/97 (74%), Gaps = 4/97 (4%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDD----AYAKASAWYYV 405
SG I+KM+K+FTK DA+AI +AV+SLRKEAR+WF+D S D +YAKASAWY+V
Sbjct: 999 SGCILKMAKNFTKSSDADAIRLAVKSLRKEARSWFSDMSADESGDVHEASYAKASAWYHV 1058
Query: 404 TYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
TYH Y+GCY++ R H +SFPWCVY L+ IK+ K
Sbjct: 1059 TYHPEYYGCYNKIYERPHLISFPWCVYDKLLHIKQRK 1095
[33][TOP]
>UniRef100_B5M059 RNA-directed RNA polymerase 1a (Fragment) n=1 Tax=Hordeum vulgare
RepID=B5M059_HORVU
Length = 1114
Score = 120 bits (300), Expect = 1e-25
Identities = 56/97 (57%), Positives = 72/97 (74%), Gaps = 4/97 (4%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDD----AYAKASAWYYV 405
SG I+KM+K+FTK DA+AI +AV+SLRKEAR+WF+D S D +YAKASAWY+V
Sbjct: 999 SGCILKMAKNFTKSSDADAIRLAVKSLRKEARSWFSDMSADESGDVHEASYAKASAWYHV 1058
Query: 404 TYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
TYH Y+GCY++ R H +SFPWCVY L+ IK+ K
Sbjct: 1059 TYHPEYYGCYNKIYERPHLISFPWCVYDKLLHIKQRK 1095
[34][TOP]
>UniRef100_B9HVU2 Rna-dependent RNA polymerase (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9HVU2_POPTR
Length = 1102
Score = 119 bits (298), Expect = 2e-25
Identities = 54/91 (59%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Frame = -3
Query: 569 GNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDS-SGGGGDDAYAKASAWYYVTYHH 393
G IM+M +SF K++D E I +V SLRK+AR WFN+S S DD Y KASAWY+VTYH
Sbjct: 1012 GCIMRMGRSFDKKKDLEGINFSVSSLRKQARAWFNESGSKESPDDVYRKASAWYHVTYHP 1071
Query: 392 SYWGCYDEGMNRDHYLSFPWCVYSLLVQIKK 300
+WG Y+EGM+R H+LSFPWCV+ L +IKK
Sbjct: 1072 RFWGLYNEGMDRVHFLSFPWCVHDKLFEIKK 1102
[35][TOP]
>UniRef100_C5XZ94 Putative uncharacterized protein Sb04g028630 n=1 Tax=Sorghum bicolor
RepID=C5XZ94_SORBI
Length = 1114
Score = 117 bits (294), Expect = 5e-25
Identities = 57/95 (60%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDD--AYAKASAWYYVTY 399
SG +KM+K+FTK DA+AI MAVRSLRKEAR+WFN+ S D AKASAWY+VTY
Sbjct: 1001 SGCFLKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEMSTSEDDQDATEAKASAWYHVTY 1060
Query: 398 HHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEK 294
YWG Y+EG +R H +SFPWCVY LV IK+ +
Sbjct: 1061 DPQYWGNYNEGYDRPHLISFPWCVYDKLVIIKQRR 1095
[36][TOP]
>UniRef100_A4UV46 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV46_SOLTU
Length = 1065
Score = 91.7 bits (226), Expect = 4e-17
Identities = 43/67 (64%), Positives = 53/67 (79%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHH 393
SG IMK SK+F +R+DAEAI++AVR+LRKEARTWF + DD KASAWY+VTYH
Sbjct: 1001 SGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRN--DIDDMLPKASAWYHVTYHP 1058
Query: 392 SYWGCYD 372
+YWGCY+
Sbjct: 1059 TYWGCYN 1065
[37][TOP]
>UniRef100_A9T7J6 RNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9T7J6_PHYPA
Length = 843
Score = 79.3 bits (194), Expect = 2e-13
Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Frame = -3
Query: 572 SGNIMKMSKSFTKRRD--AEAITMAVRSLRKEARTWFNDSSGGG-GDDAYAKASAWYYVT 402
SG ++ +++ + KRR+ E I AVRSL EAR F++++ DD YAKASAWY+VT
Sbjct: 744 SGYMLNLARQYVKRREDVVERIRDAVRSLINEARQRFDENADDMVDDDIYAKASAWYHVT 803
Query: 401 YHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKK 300
YH + G H +SFPW +Y++L+QIKK
Sbjct: 804 YHPEHIKVSATGRREVHLISFPWVIYNVLLQIKK 837
[38][TOP]
>UniRef100_B9IEP4 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9IEP4_POPTR
Length = 1110
Score = 55.8 bits (133), Expect = 2e-06
Identities = 34/84 (40%), Positives = 49/84 (58%)
Frame = -3
Query: 521 EAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHHSYWGCYDEGMNRDHYLS 342
+ I +++++L+KEA+ WF S + ASAWY+VTYH +Y + E MN LS
Sbjct: 1039 DRILVSLKNLKKEAKEWFESSCNP--TEHQCMASAWYHVTYHPTY---FHERMN---CLS 1090
Query: 341 FPWCVYSLLVQIKKEKIAWNRRNA 270
FPW V +L+ IK + N RNA
Sbjct: 1091 FPWIVGDILLNIK----SLNSRNA 1110
[39][TOP]
>UniRef100_B9RB56 RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis
RepID=B9RB56_RICCO
Length = 983
Score = 55.1 bits (131), Expect = 4e-06
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = -3
Query: 521 EAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHHSYWGCYDEGMNRDHYLS 342
+ I ++V+SL+KEA+ WF + ASAWY+VTYH SY + EG+ LS
Sbjct: 894 DRILISVKSLQKEAKEWFESCCQA--KEKQRLASAWYHVTYHPSY---FQEGIT---CLS 945
Query: 341 FPWCVYSLLVQIK 303
FPW V +L+ IK
Sbjct: 946 FPWIVADILLNIK 958