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[1][TOP]
>UniRef100_B9RC12 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9RC12_RICCO
Length = 1475
Score = 272 bits (695), Expect = 2e-71
Identities = 132/195 (67%), Positives = 161/195 (82%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KDVVLGKRND SFR VVVGDP++ SEIG+PC IAE LQ+S ++ N L CCE+
Sbjct: 315 WIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQISEHLTTWNWDKLNTCCEV 374
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
RLLEKG V R+G+ V + + K+L+IGD++YRPL DGD VLINRPPSIHQHS+I+LSV+
Sbjct: 375 RLLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVK 434
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VLP +SV++INPL C+P RGDFDGDCLHGY+PQSV RVEL ELVALD+QLIN Q+GRNL
Sbjct: 435 VLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQLINVQNGRNL 494
Query: 541 LSLSQDSLTAAYMLM 585
LS SQDSL AA+++M
Sbjct: 495 LSFSQDSLVAAHLVM 509
[2][TOP]
>UniRef100_UPI0001982C31 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001982C31
Length = 1391
Score = 271 bits (694), Expect = 2e-71
Identities = 134/195 (68%), Positives = 162/195 (83%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+K+V+LGKR + SFR +VVGDP L LSEIG+PC IAE L +S ++N N + + + C L
Sbjct: 227 WIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNL 286
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
RLLEKG V RKG + + D Q GD++YRPLTDGD VLINRPPSIHQHS+I+LSV+
Sbjct: 287 RLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVK 346
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VLP++SVVSINPLCCSP RGDFDGDCLHGYIPQSV +RVEL+ELVAL+RQLIN QSGRNL
Sbjct: 347 VLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNL 406
Query: 541 LSLSQDSLTAAYMLM 585
LSLSQDSL+AA+++M
Sbjct: 407 LSLSQDSLSAAHLVM 421
[3][TOP]
>UniRef100_A7QKE4 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7QKE4_VITVI
Length = 1360
Score = 271 bits (694), Expect = 2e-71
Identities = 134/195 (68%), Positives = 162/195 (83%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+K+V+LGKR + SFR +VVGDP L LSEIG+PC IAE L +S ++N N + + + C L
Sbjct: 285 WIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNL 344
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
RLLEKG V RKG + + D Q GD++YRPLTDGD VLINRPPSIHQHS+I+LSV+
Sbjct: 345 RLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVK 404
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VLP++SVVSINPLCCSP RGDFDGDCLHGYIPQSV +RVEL+ELVAL+RQLIN QSGRNL
Sbjct: 405 VLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNL 464
Query: 541 LSLSQDSLTAAYMLM 585
LSLSQDSL+AA+++M
Sbjct: 465 LSLSQDSLSAAHLVM 479
[4][TOP]
>UniRef100_A5BZZ3 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A5BZZ3_VITVI
Length = 1393
Score = 271 bits (694), Expect = 2e-71
Identities = 134/195 (68%), Positives = 162/195 (83%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+K+V+LGKR + SFR +VVGDP L LSEIG+PC IAE L +S ++N N + + + C L
Sbjct: 312 WIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNL 371
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
RLLEKG V RKG + + D Q GD++YRPLTDGD VLINRPPSIHQHS+I+LSV+
Sbjct: 372 RLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVK 431
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VLP++SVVSINPLCCSP RGDFDGDCLHGYIPQSV +RVEL+ELVAL+RQLIN QSGRNL
Sbjct: 432 VLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNL 491
Query: 541 LSLSQDSLTAAYMLM 585
LSLSQDSL+AA+++M
Sbjct: 492 LSLSQDSLSAAHLVM 506
[5][TOP]
>UniRef100_B9GKP9 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9GKP9_POPTR
Length = 1517
Score = 258 bits (660), Expect = 2e-67
Identities = 127/195 (65%), Positives = 153/195 (78%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KDVVLGKRND SFR V+VGDP L L EIG+PC IAE LQ+S + N + L C E
Sbjct: 348 WIKDVVLGKRNDHSFRMVIVGDPHLQLHEIGIPCHIAERLQISESLTAWNWEKLNACFEK 407
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
EKG V R+G V + K+L++GD++YRPL DGD VLINRPPSIHQHS+I+LSV+
Sbjct: 408 SRFEKGDMHVRREGNLVRVRHMKELRLGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVK 467
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VLP+ SV++INPLCC P R DFDGDCLHGY+PQSV RVEL ELV+LD+QL N QSGRNL
Sbjct: 468 VLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQLTNWQSGRNL 527
Query: 541 LSLSQDSLTAAYMLM 585
LSLSQDSLTAA++++
Sbjct: 528 LSLSQDSLTAAHLVL 542
[6][TOP]
>UniRef100_Q9LQ02 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q9LQ02_ARATH
Length = 1453
Score = 243 bits (621), Expect = 6e-63
Identities = 121/194 (62%), Positives = 156/194 (80%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
+MKDV+LGKR+D +FRTVVVGDP L L+EIG+P IA+ LQVS ++N+ NK+ L+
Sbjct: 308 FMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVP 367
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
LL+ V R+G +V + DLQ GD ++R L DGD VL+NRPPSIHQHS+I+++VR
Sbjct: 368 TLLDNKEMHV-RRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVR 426
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
+LP +SVVS+NP+CC P RGDFDGDCLHGY+PQS+ A+VEL+ELVALD+QLIN Q+GRNL
Sbjct: 427 ILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNL 486
Query: 541 LSLSQDSLTAAYML 582
LSL QDSLTAAY++
Sbjct: 487 LSLGQDSLTAAYLV 500
[7][TOP]
>UniRef100_C0JR68 DNA-directed RNA polymerase n=1 Tax=Zea mays RepID=C0JR68_MAIZE
Length = 1444
Score = 231 bits (589), Expect = 3e-59
Identities = 113/194 (58%), Positives = 146/194 (75%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KDVVL KR+D FR+++VGDP + L EIG+P ++ SL VS +V+ N ++ C L
Sbjct: 326 WLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNL 385
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
LL K + R G+ + L K L+IGD+ YRPL DGD +LINRPPS+HQHS+I+LS +
Sbjct: 386 HLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAK 445
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
+LPI SVVSINPLCC+P GDFDGDCLHGYIPQS+ +RVEL ELV+L QL+N Q GRNL
Sbjct: 446 ILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNL 505
Query: 541 LSLSQDSLTAAYML 582
+SL+ DSL AA++L
Sbjct: 506 VSLTHDSLAAAHLL 519
[8][TOP]
>UniRef100_C0JR65 DNA-directed RNA polymerase n=2 Tax=Zea mays RepID=C0JR65_MAIZE
Length = 1444
Score = 231 bits (589), Expect = 3e-59
Identities = 113/194 (58%), Positives = 146/194 (75%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KDVVL KR+D FR+++VGDP + L EIG+P ++ SL VS +V+ N ++ C L
Sbjct: 326 WLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNL 385
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
LL K + R G+ + L K L+IGD+ YRPL DGD +LINRPPS+HQHS+I+LS +
Sbjct: 386 HLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAK 445
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
+LPI SVVSINPLCC+P GDFDGDCLHGYIPQS+ +RVEL ELV+L QL+N Q GRNL
Sbjct: 446 ILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNL 505
Query: 541 LSLSQDSLTAAYML 582
+SL+ DSL AA++L
Sbjct: 506 VSLTHDSLAAAHLL 519
[9][TOP]
>UniRef100_Q1L5X5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antirrhinum majus
RepID=Q1L5X5_ANTMA
Length = 1112
Score = 230 bits (587), Expect = 5e-59
Identities = 114/180 (63%), Positives = 140/180 (77%)
Frame = +1
Query: 43 FRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKG 222
FRTVVVGDP + + EIG+P +IA+++ VS + N L CC+L L G F V R G
Sbjct: 1 FRTVVVGDPRIRVDEIGLPIEIAKNMLVSDNIYLWNWDKLESCCDLMLRRNGQFSVTRDG 60
Query: 223 RPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLC 402
+ + L+ GD +YRPL DGD VLINRPPSIHQHS+I+LSV++LPI+SVVSINPL
Sbjct: 61 QKTCVRSADMLRTGDSIYRPLIDGDIVLINRPPSIHQHSLIALSVKILPINSVVSINPLT 120
Query: 403 CSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYML 582
CSPLRGDFDGDCLHGY+PQSV RVEL ELV L++QL+NGQSG+NLLSLSQDSLTAA+++
Sbjct: 121 CSPLRGDFDGDCLHGYVPQSVNTRVELKELVTLNKQLVNGQSGQNLLSLSQDSLTAAHLI 180
[10][TOP]
>UniRef100_Q1L5X6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum
RepID=Q1L5X6_SOLLC
Length = 1138
Score = 226 bits (577), Expect = 8e-58
Identities = 108/181 (59%), Positives = 145/181 (80%)
Frame = +1
Query: 43 FRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKG 222
FRTVVVGDP++ L EIG+PC AE+L ++ ++ N + + D C+L +L++G V R G
Sbjct: 1 FRTVVVGDPNIELGEIGIPCXXAENLHMAETLSLRNWERMTDLCDLMILQRGGILVRRNG 60
Query: 223 RPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLC 402
V + LQ GD+++RPL DGD V+INRPPSIHQHS+I+LSVR+LPI+SV+SINPL
Sbjct: 61 VLVRISVMDGLQKGDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLV 120
Query: 403 CSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYML 582
CSP RGDFDGDCLHGYIPQS+ + +EL+ELVAL +QL++GQ+G+NLLSLS DSLTAA+++
Sbjct: 121 CSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLI 180
Query: 583 M 585
+
Sbjct: 181 L 181
[11][TOP]
>UniRef100_B9G500 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9G500_ORYSJ
Length = 1384
Score = 218 bits (554), Expect = 4e-55
Identities = 103/194 (53%), Positives = 144/194 (74%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KD++L KR+D +FR+++VGDP + L+EIG+P +A +L VS V+ N + + C L
Sbjct: 275 WLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNFETINLKCNL 334
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
LL K V R G+ + + K L+IGD+ YR L DGD VL+NRPPS+HQHS+I+LS +
Sbjct: 335 HLLTKEVLLVRRNGKLIFVRKANKLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAK 394
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
+LPI S V+INPLCC P +GDFDGDCLHGY+PQ++ +RVEL+ LV+L Q++N Q GR+L
Sbjct: 395 LLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLVSLSGQMLNAQDGRSL 454
Query: 541 LSLSQDSLTAAYML 582
+SL+ DSL AA+ L
Sbjct: 455 VSLTHDSLAAAHQL 468
[12][TOP]
>UniRef100_B8BED0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8BED0_ORYSI
Length = 1384
Score = 218 bits (554), Expect = 4e-55
Identities = 103/194 (53%), Positives = 144/194 (74%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KD++L KR+D +FR+++VGDP + L+EIG+P +A +L VS V+ N + + C L
Sbjct: 275 WLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNFETINLKCNL 334
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
LL K V R G+ + + K L+IGD+ YR L DGD VL+NRPPS+HQHS+I+LS +
Sbjct: 335 HLLTKEVLLVRRNGKLIFVRKANKLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAK 394
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
+LPI S V+INPLCC P +GDFDGDCLHGY+PQ++ +RVEL+ LV+L Q++N Q GR+L
Sbjct: 395 LLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLVSLSGQMLNAQDGRSL 454
Query: 541 LSLSQDSLTAAYML 582
+SL+ DSL AA+ L
Sbjct: 455 VSLTHDSLAAAHQL 468
[13][TOP]
>UniRef100_Q01JX0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa RepID=Q01JX0_ORYSA
Length = 1407
Score = 215 bits (547), Expect = 2e-54
Identities = 104/194 (53%), Positives = 140/194 (72%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KD++L KR+D +FR+++VGDP + L+EIG+P +A +L VS V+ N + + C L
Sbjct: 298 WLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNL 357
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
LL K V R G + + K L+IGD+ YR L DGD VL+NRPPS+HQHS+I+LS +
Sbjct: 358 HLLTKEVLLVRRNGNLIFVRKANQLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAK 417
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
+L S VSINPLCC P +GDFDGDCLHGYIPQ + +R+EL ELV+L QL+N Q GR+L
Sbjct: 418 LLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVSLSGQLLNQQDGRSL 477
Query: 541 LSLSQDSLTAAYML 582
+SL+ DSL AA+ L
Sbjct: 478 VSLTHDSLAAAHQL 491
[14][TOP]
>UniRef100_B8AT49 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8AT49_ORYSI
Length = 1598
Score = 215 bits (547), Expect = 2e-54
Identities = 104/194 (53%), Positives = 140/194 (72%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KD++L KR+D +FR+++VGDP + L+EIG+P +A +L VS V+ N + + C L
Sbjct: 271 WLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNL 330
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
LL K V R G + + K L+IGD+ YR L DGD VL+NRPPS+HQHS+I+LS +
Sbjct: 331 HLLTKEVLLVRRNGNLIFVRKANQLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAK 390
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
+L S VSINPLCC P +GDFDGDCLHGYIPQ + +R+EL ELV+L QL+N Q GR+L
Sbjct: 391 LLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVSLSGQLLNQQDGRSL 450
Query: 541 LSLSQDSLTAAYML 582
+SL+ DSL AA+ L
Sbjct: 451 VSLTHDSLAAAHQL 464
[15][TOP]
>UniRef100_B9FC30 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FC30_ORYSJ
Length = 1623
Score = 214 bits (546), Expect = 3e-54
Identities = 104/194 (53%), Positives = 139/194 (71%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KD++L KR+D +FR+++VGDP + L+EIG+P +A +L VS V+ N + + C L
Sbjct: 292 WLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNL 351
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
LL K V R G + + K L+IGD+ YR L DGD VL+NRPPS+HQHS+I+LS +
Sbjct: 352 HLLTKEVLLVRRNGNLIFVRKANQLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAK 411
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
+L S VSINPLCC P +GDFDGDCLHGYIPQ + +R+EL ELV L QL+N Q GR+L
Sbjct: 412 LLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVGLSGQLLNQQDGRSL 471
Query: 541 LSLSQDSLTAAYML 582
+SL+ DSL AA+ L
Sbjct: 472 VSLTHDSLAAAHQL 485
[16][TOP]
>UniRef100_Q7XTZ3 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XTZ3_ORYSJ
Length = 1664
Score = 212 bits (540), Expect = 2e-53
Identities = 103/194 (53%), Positives = 138/194 (71%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KD++L KR+D +FR+++VGDP + L+EIG+P +A +L VS V+ N + + C L
Sbjct: 303 WLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNL 362
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
LL K V R G + + K L+IGD+ YR L DGD VL+N PPS+HQHS+I+LS +
Sbjct: 363 HLLTKEVLLVRRNGNLIFVRKANQLEIGDIAYRLLQDGDLVLVNSPPSVHQHSLIALSAK 422
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
+L S VSINPLCC P +GDFDGDCLHGYIPQ + +R+EL ELV L QL+N Q GR+L
Sbjct: 423 LLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSRIELEELVGLSGQLLNQQDGRSL 482
Query: 541 LSLSQDSLTAAYML 582
+SL+ DSL AA+ L
Sbjct: 483 VSLTHDSLAAAHQL 496
[17][TOP]
>UniRef100_C5YE51 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YE51_SORBI
Length = 1203
Score = 164 bits (415), Expect = 5e-39
Identities = 79/144 (54%), Positives = 103/144 (71%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL 180
W+KD VL KR+D +FR+ +VGDP + L EIG+P +A +L VS +VN N +N+ C L
Sbjct: 265 WLKDAVLSKRSDNAFRSTMVGDPKIKLWEIGIPEDLASNLVVSDHVNSYNFENINLKCNL 324
Query: 181 RLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
LL K + R G+ + L K L+IGD+ YRPL DGD +LINRPPS+HQHS+I+ S +
Sbjct: 325 HLLTKEELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDLILINRPPSVHQHSLIAFSAK 384
Query: 361 VLPISSVVSINPLCCSPLRGDFDG 432
+LPI SVVSINPLCC+P GDFDG
Sbjct: 385 ILPIHSVVSINPLCCTPFLGDFDG 408
[18][TOP]
>UniRef100_A9SIX8 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9SIX8_PHYPA
Length = 2458
Score = 146 bits (369), Expect = 1e-33
Identities = 81/202 (40%), Positives = 123/202 (60%), Gaps = 8/202 (3%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE- 177
W+ LGK + + R VV GDP LA+ IGVP +IA+ L V + N+ L + +
Sbjct: 705 WISQNYLGKGGNYTARAVVAGDPSLAIETIGVPLEIAQKLTVPERATKWNRSKLQEYVDR 764
Query: 178 LRLLEKGHFK-----VCRKGRPVVLYKKKD--LQIGDLLYRPLTDGDKVLINRPPSIHQH 336
++L++G K + R ++ +QIGD+++R + DGD V +NRPPS+H+H
Sbjct: 765 TQMLQQGSGKPGATRIVRNEEAFQVWANSTHTVQIGDVIHRNIQDGDFVYVNRPPSVHKH 824
Query: 337 SMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLI 516
S+++L V+V V++INPL C P DFDGD H +IPQS+ A EL L+A+ +Q+I
Sbjct: 825 SLMALKVQV-HYGLVLTINPLVCPPFNADFDGDIFHVFIPQSLQAIAELEHLMAVPQQII 883
Query: 517 NGQSGRNLLSLSQDSLTAAYML 582
+ G+ LL L+QD+L AAY+L
Sbjct: 884 SDHGGQPLLGLTQDTLLAAYLL 905
[19][TOP]
>UniRef100_A9SIR4 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9SIR4_PHYPA
Length = 1795
Score = 134 bits (337), Expect = 5e-30
Identities = 73/203 (35%), Positives = 120/203 (59%), Gaps = 9/203 (4%)
Frame = +1
Query: 1 WMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC-- 174
W+ VLGK + + + V+ GDP L + +IG+P IA+ L + ++ N L +
Sbjct: 553 WLSQNVLGKSGNFTAKAVLAGDPFLGIEQIGIPWLIAQKLTLPERASQWNHTKLQEYVNV 612
Query: 175 --ELRLLEKGHFKVCRKGRPVVLYK-----KKDLQIGDLLYRPLTDGDKVLINRPPSIHQ 333
+L+ + R R V+Y+ +QIGD+++R + DGD V +NRPPS+H+
Sbjct: 613 SQKLQQESENTAHATRVERNEVVYQVLSKTSLKVQIGDIVHRHIQDGDYVYVNRPPSVHR 672
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
HS+++L V + +++NPL C P DFDGD H + PQS+ A EL++L+A+ +Q+
Sbjct: 673 HSLVALKVHIHH-QPTITVNPLICPPFSADFDGDIFHIFAPQSLQAIAELDQLMAVKQQV 731
Query: 514 INGQSGRNLLSLSQDSLTAAYML 582
I+ G+ LL L+QD+L AA++L
Sbjct: 732 ISEHGGQPLLELTQDTLLAAHLL 754
[20][TOP]
>UniRef100_Q1L5Y5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chara hispida
RepID=Q1L5Y5_9VIRI
Length = 1144
Score = 133 bits (335), Expect = 9e-30
Identities = 74/196 (37%), Positives = 124/196 (63%), Gaps = 3/196 (1%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
M++ + GKR++ S R+V+V D + L E+GVP +A +L V V + N +++ C + +
Sbjct: 272 MRENISGKRSNNSARSVIVPDASIGLEEVGVPRSMAGNLFVEESVTQWNLESMR-CLQAK 330
Query: 184 LLEKGHFKVCRKGRPVVLYKKKD---LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K F R G + + +K+ L IGD++ R L+DGD +++NR PS+H+HS+I+
Sbjct: 331 GYLKDRF--FRAGEAMAMRLEKEYTSLTIGDVVERKLSDGDIIVLNRQPSLHRHSVIAFR 388
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
++P +S INP+ C P DFDGD ++ ++P S+ A+ E +L+ L +Q+++ Q GR
Sbjct: 389 ACIVP-TSAFGINPVVCGPFNADFDGDEMNLFVPTSLEAQAEARQLLLLRKQVVSSQDGR 447
Query: 535 NLLSLSQDSLTAAYML 582
++SL QDSL AA+ML
Sbjct: 448 AIVSLRQDSLLAAHML 463
[21][TOP]
>UniRef100_Q5D868 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spinacia oleracea
RepID=Q5D868_SPIOL
Length = 1902
Score = 129 bits (323), Expect = 2e-28
Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 5/192 (2%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
M+ + + K + S R+V+ GD A++E+GVPC+IA+ + VN N + L
Sbjct: 102 MRTLFISKGSGFSSRSVITGDAYRAVNEVGVPCEIAQKMTFEERVNVHNIQYLQG----- 156
Query: 184 LLEKGHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L++K R G ++ L++G +++R + DGD V INRPP+ H+HS+ +
Sbjct: 157 LVDKNLCLTFRDGLSTYSLREGSKGHTFLRLGQMVHRRIMDGDIVFINRPPTTHKHSLQA 216
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
L V + VV INPL C PL DFDGDC+H + PQS++AR E+ EL ++++QL++ S
Sbjct: 217 LRVYIHD-DHVVKINPLMCGPLAADFDGDCVHLFYPQSLSARAEVLELFSVEKQLLSSHS 275
Query: 529 GRNLLSLSQDSL 564
G L LS DSL
Sbjct: 276 GNLNLQLSTDSL 287
[22][TOP]
>UniRef100_B9RGA8 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9RGA8_RICCO
Length = 991
Score = 124 bits (312), Expect = 4e-27
Identities = 71/192 (36%), Positives = 111/192 (57%), Gaps = 5/192 (2%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
M+ + + K + S R+V+ GD ++EIG+P +IA+ + VN N + L + + +
Sbjct: 313 MRTLFIRKGSGFSSRSVITGDAYKCVNEIGIPSEIAQRITFEERVNAHNMQYLQELVDNK 372
Query: 184 LLEKGHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L R G ++ L++G +++R + DGD V INRPP+ H+HS+ +
Sbjct: 373 LC-----LTYRDGSSTYSLREGSKGHTFLRLGQIVHRRIMDGDMVFINRPPTTHKHSLQA 427
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
LSV V V INPL C PL DFDGDC+H + PQS+AA+ E+ EL ++++QL++ S
Sbjct: 428 LSVYVHD-GHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHS 486
Query: 529 GRNLLSLSQDSL 564
G L L+ DSL
Sbjct: 487 GNLNLQLTSDSL 498
[23][TOP]
>UniRef100_A7Q5G0 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7Q5G0_VITVI
Length = 1830
Score = 120 bits (300), Expect = 1e-25
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 7/200 (3%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
M+ + + K + S R+V+ GD ++EIG+P +IA+ + VN N K+L + + +
Sbjct: 311 MRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEK 370
Query: 184 L-------LEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSM 342
L L + KG L+ G +++R + DGD V INRPP+ H+HS+
Sbjct: 371 LCLTYRDGLSTYSLREGSKGHTF-------LRPGQVVHRRIMDGDIVFINRPPTTHKHSL 423
Query: 343 ISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLING 522
+LSV V V INPL C PL DFDGDC+H + PQS+ A+ E+ EL ++++QL++
Sbjct: 424 QALSVYVHD-DHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSS 482
Query: 523 QSGRNLLSLSQDSLTAAYML 582
SG L L+ DSL + +L
Sbjct: 483 HSGNLNLQLATDSLLSLKVL 502
[24][TOP]
>UniRef100_B9GM06 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9GM06_POPTR
Length = 842
Score = 118 bits (296), Expect = 3e-25
Identities = 69/198 (34%), Positives = 113/198 (57%), Gaps = 5/198 (2%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
M+ + + K + S R+V+ GD ++++G+P +IA+ + V+ N + L + + +
Sbjct: 231 MRTLFIRKGSGFSSRSVITGDAYTKVNQVGIPYEIAQRITFEERVSVHNMRYLQELVDNK 290
Query: 184 LLEKGHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L R G ++ L+ G +++R + DGD V INRPP+ H+HS+ +
Sbjct: 291 LC-----LTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIIDGDVVFINRPPTTHKHSLQA 345
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
LSV V V INPL C PL DFDGDC+H + PQS+AA+ E+ EL ++++QL++ S
Sbjct: 346 LSVYVHD-DHTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHS 404
Query: 529 GRNLLSLSQDSLTAAYML 582
G L L+ DSL + M+
Sbjct: 405 GNLNLQLTTDSLLSLKMI 422
[25][TOP]
>UniRef100_C5XUR7 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5XUR7_SORBI
Length = 554
Score = 117 bits (294), Expect = 5e-25
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 5/194 (2%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
M+ + + K + S R+V+ GDP + L +G+P ++A+ + V N L +
Sbjct: 1 MRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEEQVTDININRLQE----- 55
Query: 184 LLEKGHFKVCRKGRPVVLYK-----KKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+++KG R G+ L++G + R + DGD V +NRPPS H+HS+ +
Sbjct: 56 VVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQA 115
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V V INPL C P DFDGDC+H Y PQS+AA+ E EL +++RQLI+ S
Sbjct: 116 FYAYVHD-DHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELFSVERQLISSHS 174
Query: 529 GRNLLSLSQDSLTA 570
G+ L L D L A
Sbjct: 175 GKVNLQLGNDCLVA 188
[26][TOP]
>UniRef100_B9GWX9 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9GWX9_POPTR
Length = 924
Score = 117 bits (294), Expect = 5e-25
Identities = 69/197 (35%), Positives = 114/197 (57%), Gaps = 4/197 (2%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
M+ + + K + S R+V+ GD ++++G+P +IA+ + V+ N + L + + +
Sbjct: 313 MRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEERVSVHNMRYLQELVDNK 372
Query: 184 LL----EKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISL 351
L + R+G + L+ G +++R + DGD V INRPP+ H+HS+ +L
Sbjct: 373 LCLTYKDGSSTYSLREGSKGHTF----LRPGQVVHRRIMDGDIVFINRPPTTHKHSLQAL 428
Query: 352 SVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSG 531
SV V V INPL C PL DFDGDC+H + PQS+AA+ E+ EL ++++QL++ SG
Sbjct: 429 SVYVHD-DHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSG 487
Query: 532 RNLLSLSQDSLTAAYML 582
L L+ DSL + M+
Sbjct: 488 NLNLQLTTDSLLSLKMM 504
[27][TOP]
>UniRef100_B9F2S6 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9F2S6_ORYSJ
Length = 2017
Score = 117 bits (294), Expect = 5e-25
Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
M+ + + K + S R+V+ GDP + + IG+P ++A+ + V N L +
Sbjct: 317 MRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQVTDINLNRLQE----- 371
Query: 184 LLEKGHFKVCRKGRPVVLYK-----KKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+++KG R G+ L++G + R + DGD V +NRPPS H+HS+ +
Sbjct: 372 IVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQA 431
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V V V INPL C+P DFDGDC+H Y PQS+AA+ E EL ++++QL + S
Sbjct: 432 FRVYVHE-DHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTSSHS 490
Query: 529 GRNLLSLSQDSLTA 570
G+ L L DSL A
Sbjct: 491 GKVNLQLVSDSLLA 504
[28][TOP]
>UniRef100_B8AHU1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8AHU1_ORYSI
Length = 1867
Score = 117 bits (294), Expect = 5e-25
Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
M+ + + K + S R+V+ GDP + + IG+P ++A+ + V N L +
Sbjct: 317 MRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQVTDINLNRLQE----- 371
Query: 184 LLEKGHFKVCRKGRPVVLYK-----KKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+++KG R G+ L++G + R + DGD V +NRPPS H+HS+ +
Sbjct: 372 IVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQA 431
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V V V INPL C+P DFDGDC+H Y PQS+AA+ E EL ++++QL + S
Sbjct: 432 FRVYVHE-DHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTSSHS 490
Query: 529 GRNLLSLSQDSLTA 570
G+ L L DSL A
Sbjct: 491 GKVNLQLVSDSLLA 504
[29][TOP]
>UniRef100_Q5D869 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q5D869_ARATH
Length = 1976
Score = 117 bits (293), Expect = 7e-25
Identities = 72/210 (34%), Positives = 120/210 (57%), Gaps = 16/210 (7%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESL----QVSVYVNRENKKNLLD- 168
M+ + + K + S R+V+ GD ++E+G+P +IA+ + +VSV+ NR + L+D
Sbjct: 311 MRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVH-NRGYLQKLVDD 369
Query: 169 -----------CCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINR 315
LR KGH +L+ G +++R + DGD V INR
Sbjct: 370 KLCLSYTQGSTTYSLRDGSKGH---------------TELKPGQVVHRRVMDGDVVFINR 414
Query: 316 PPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELV 495
PP+ H+HS+ +L V V + V INPL CSPL DFDGDC+H + PQS++A+ E+ EL
Sbjct: 415 PPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELF 473
Query: 496 ALDRQLINGQSGRNLLSLSQDSLTAAYMLM 585
++++QL++ +G+ +L + DSL + +++
Sbjct: 474 SVEKQLLSSHTGQLILQMGSDSLLSLRVML 503
[30][TOP]
>UniRef100_Q1L5X4 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q1L5X4_ARATH
Length = 1976
Score = 117 bits (293), Expect = 7e-25
Identities = 72/210 (34%), Positives = 120/210 (57%), Gaps = 16/210 (7%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESL----QVSVYVNRENKKNLLD- 168
M+ + + K + S R+V+ GD ++E+G+P +IA+ + +VSV+ NR + L+D
Sbjct: 311 MRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVH-NRGYLQKLVDD 369
Query: 169 -----------CCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINR 315
LR KGH +L+ G +++R + DGD V INR
Sbjct: 370 KLCLSYTQGSTTYSLRDGSKGH---------------TELKPGQVVHRRVMDGDVVFINR 414
Query: 316 PPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELV 495
PP+ H+HS+ +L V V + V INPL CSPL DFDGDC+H + PQS++A+ E+ EL
Sbjct: 415 PPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELF 473
Query: 496 ALDRQLINGQSGRNLLSLSQDSLTAAYMLM 585
++++QL++ +G+ +L + DSL + +++
Sbjct: 474 SVEKQLLSSHTGQLILQMGSDSLLSLRVML 503
[31][TOP]
>UniRef100_O04206 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=O04206_ARATH
Length = 888
Score = 117 bits (293), Expect = 7e-25
Identities = 72/210 (34%), Positives = 120/210 (57%), Gaps = 16/210 (7%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESL----QVSVYVNRENKKNLLD- 168
M+ + + K + S R+V+ GD ++E+G+P +IA+ + +VSV+ NR + L+D
Sbjct: 262 MRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVH-NRGYLQKLVDD 320
Query: 169 -----------CCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINR 315
LR KGH +L+ G +++R + DGD V INR
Sbjct: 321 KLCLSYTQGSTTYSLRDGSKGH---------------TELKPGQVVHRRVMDGDVVFINR 365
Query: 316 PPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELV 495
PP+ H+HS+ +L V V + V INPL CSPL DFDGDC+H + PQS++A+ E+ EL
Sbjct: 366 PPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELF 424
Query: 496 ALDRQLINGQSGRNLLSLSQDSLTAAYMLM 585
++++QL++ +G+ +L + DSL + +++
Sbjct: 425 SVEKQLLSSHTGQLILQMGSDSLLSLRVML 454
[32][TOP]
>UniRef100_A4HJP9 DNA-directed RNA polymerase n=1 Tax=Leishmania braziliensis
RepID=A4HJP9_LEIBR
Length = 1662
Score = 117 bits (293), Expect = 7e-25
Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L D +
Sbjct: 324 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTDFVQRVTYPS 383
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ + G L KD L +GD++ R + DGD VL NR P++H+ SM+ VR
Sbjct: 384 ANYVIRPNGNVTKLALVKDRSAVNLDVGDVVERHIIDGDVVLFNRQPTLHRMSMMGHRVR 443
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 444 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 502
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 503 MGIVQDSLLGSYRL 516
[33][TOP]
>UniRef100_C1GGI7 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GGI7_PARBD
Length = 1458
Score = 117 bits (292), Expect = 9e-25
Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC---------- 171
GKR D S RTV+ DP+L + E+ VP +A ++ V R NK+ L C
Sbjct: 372 GKRVDFSSRTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKEKLRQCVRNGTKTWPG 431
Query: 172 CELRLLEKGHFKVCRK-GRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L + +FK+ K G P ++ +L+ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYVLKKSQNFKMNLKFGNPNLI--ANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILS 489
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L+ ++
Sbjct: 490 HFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVTPKN 548
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++S QD +TAAYML
Sbjct: 549 GEPIISAIQDFITAAYML 566
[34][TOP]
>UniRef100_C0SHD3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SHD3_PARBP
Length = 1449
Score = 117 bits (292), Expect = 9e-25
Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC---------- 171
GKR D S RTV+ DP+L + E+ VP +A ++ V R NK+ L C
Sbjct: 363 GKRVDFSSRTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKEKLRQCVRNGTKTWPG 422
Query: 172 CELRLLEKGHFKVCRK-GRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L + +FK+ K G P ++ +L+ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 423 ANYVLKKSQNFKMNLKFGNPNLI--ANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILS 480
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L+ ++
Sbjct: 481 HFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVTPKN 539
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++S QD +TAAYML
Sbjct: 540 GEPIISAIQDFITAAYML 557
[35][TOP]
>UniRef100_C1GX38 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1GX38_PARBA
Length = 1425
Score = 116 bits (290), Expect = 1e-24
Identities = 72/198 (36%), Positives = 109/198 (55%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC---------- 171
GKR D S RTV+ DP+L + E+ VP +A ++ V R NK L C
Sbjct: 340 GKRVDFSSRTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKDKLRQCVRNGTKTWPG 399
Query: 172 CELRLLEKGHFKVCRK-GRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L + +FK+ K G P ++ +L+ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 400 ANYVLKKSQNFKMNLKFGNPNLI--ANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILS 457
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L+ ++
Sbjct: 458 HFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLVTPKN 516
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++S QD +TAAYML
Sbjct: 517 GEPIISAIQDFITAAYML 534
[36][TOP]
>UniRef100_Q4Q600 DNA-directed RNA polymerase n=1 Tax=Leishmania major
RepID=Q4Q600_LEIMA
Length = 1662
Score = 115 bits (289), Expect = 2e-24
Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 324 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPS 383
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ + G L KD L +GD++ R + DGD VL NR P++H+ SM+ VR
Sbjct: 384 ANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVR 443
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 444 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 502
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 503 MGIVQDSLLGSYRL 516
[37][TOP]
>UniRef100_A4I766 DNA-directed RNA polymerase n=1 Tax=Leishmania infantum
RepID=A4I766_LEIIN
Length = 1662
Score = 115 bits (289), Expect = 2e-24
Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 324 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPS 383
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ + G L KD L +GD++ R + DGD VL NR P++H+ SM+ VR
Sbjct: 384 ANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVR 443
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 444 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 502
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 503 MGIVQDSLLGSYRL 516
[38][TOP]
>UniRef100_Q9BJ59 DNA-directed RNA polymerase n=1 Tax=Leptomonas seymouri
RepID=Q9BJ59_LEPSE
Length = 1657
Score = 115 bits (288), Expect = 3e-24
Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP IA +L VN NKK L + +
Sbjct: 324 LMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVNVINKKRLTEFVQRSTYPS 383
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ + G L KD L +GD++ R + DGD VL NR P++H+ SM+ VR
Sbjct: 384 ANYIMRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVR 443
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 444 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 502
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 503 MGIVQDSLLGSYRL 516
[39][TOP]
>UniRef100_B1L739 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum
cryptofilum OPF8 RepID=B1L739_KORCO
Length = 1324
Score = 115 bits (288), Expect = 3e-24
Identities = 68/203 (33%), Positives = 113/203 (55%), Gaps = 14/203 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE------ 177
++GKR + S RTV+ DP + + E+GVP +IA L V YVN N + + +
Sbjct: 331 LIGKRVNFSARTVISPDPMIDIDEVGVPVEIAMVLTVPEYVNENNIEKMKELVMRGPDEY 390
Query: 178 --LRLLEKG-----HFKVC-RKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQ 333
+ KG K+ RKG+ + + L+ GD++ R L DGD V+ NR PS+H+
Sbjct: 391 PGANAIRKGGVTPISLKILQRKGKDALREAAEQLEPGDIVERHLMDGDYVIFNRQPSLHK 450
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ V+VLP + ++P C P DFDGD ++ ++PQ + VE+ EL+ + +
Sbjct: 451 LSMLGHRVKVLP-GATFRLHPAVCVPYNADFDGDEMNLHVPQILDGSVEVRELMGVKYNM 509
Query: 514 INGQSGRNLLSLSQDSLTAAYML 582
++ ++G +++ QD +TA YM+
Sbjct: 510 LSPRTGGSIIGARQDFITALYMI 532
[40][TOP]
>UniRef100_Q25312 DNA-directed RNA polymerase n=1 Tax=Leishmania major
RepID=Q25312_LEIMA
Length = 1663
Score = 114 bits (286), Expect = 4e-24
Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 325 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPS 384
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ + G L KD L +GD++ R + DGD VL NR P++H+ SM+ VR
Sbjct: 385 ANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVR 444
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 445 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 503
Query: 541 LSLSQDSLTAAYML 582
+ + QDS+ +Y L
Sbjct: 504 MGIVQDSVLGSYKL 517
[41][TOP]
>UniRef100_C5XJ93 DNA-directed RNA polymerase (Fragment) n=1 Tax=Sorghum bicolor
RepID=C5XJ93_SORBI
Length = 1571
Score = 114 bits (285), Expect = 6e-24
Identities = 70/196 (35%), Positives = 102/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLD----- 168
MK + L K + + R V+ GDP + L +GVP +IA + V V N L D
Sbjct: 317 MKTLFLSKSSSYTCRAVITGDPYIGLDVVGVPDEIARRMSVQECVTNYNIARLQDMMNKG 376
Query: 169 -CCELRLLEKGHFKVC-RKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSM 342
C L + + +KG + L++G+ + R + DGD V +N+PPS HS+
Sbjct: 377 LCLTYTDLNTNTYDLDGKKGNKKCIM----LRVGETVDRRVLDGDLVFLNKPPSTDMHSI 432
Query: 343 ISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLING 522
+L V V + INPL C PL DFDGDC+H + P+SV ARVE EL A+++QL+N
Sbjct: 433 QALYVHVHD-DHTIKINPLICGPLEADFDGDCVHIFFPRSVLARVEAAELFAVEKQLLNS 491
Query: 523 QSGRNLLSLSQDSLTA 570
+ + + D L A
Sbjct: 492 HNAKLNFQIKNDYLLA 507
[42][TOP]
>UniRef100_Q9NJR9 DNA-directed RNA polymerase n=1 Tax=Leishmania donovani
RepID=Q9NJR9_LEIDO
Length = 1665
Score = 114 bits (284), Expect = 7e-24
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++G R D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 324 LMGSRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYPS 383
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ + G L KD L +GD++ R + DGD VL NR P++H+ SM+ VR
Sbjct: 384 ANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVR 443
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 444 VLNYNTF-RLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 502
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 503 MGIVQDSLLGSYRL 516
[43][TOP]
>UniRef100_Q8SRM3 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi
RepID=Q8SRM3_ENCCU
Length = 1349
Score = 113 bits (283), Expect = 1e-23
Identities = 65/192 (33%), Positives = 115/192 (59%), Gaps = 5/192 (2%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK-- 195
GKR D S RTV+ DP+L++ E+G+P ++A+ L +S V R N++ L L E
Sbjct: 367 GKRVDFSGRTVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKL-QALVLNGPENYP 425
Query: 196 -GHFKVCRKGRPVVLYKKKDLQI--GDLLYRPLTDGDKVLINRPPSIHQHSMISLSVRVL 366
++ V K + ++Y K+D+++ G+++ R L DGD VL NR PS+H+ S++S VRV
Sbjct: 426 GANYVVGEKFKRFLMYGKRDIELKYGEVVERHLMDGDMVLFNRQPSLHRMSIMSHKVRVH 485
Query: 367 PISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLS 546
+ + N C+P DFDGD ++ ++PQ+ AR E + L+++ ++ + G +++
Sbjct: 486 R-NKTLRFNECVCTPYNADFDGDEMNVHVPQTEKARAEASVLMSVSNNIVTPRHGEPIVA 544
Query: 547 LSQDSLTAAYML 582
+QD +T Y++
Sbjct: 545 ATQDFITGLYLI 556
[44][TOP]
>UniRef100_O94666 DNA-directed RNA polymerase III subunit rpc1 n=1
Tax=Schizosaccharomyces pombe RepID=RPC1_SCHPO
Length = 1405
Score = 113 bits (283), Expect = 1e-23
Identities = 70/198 (35%), Positives = 111/198 (56%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE-------- 177
GKR D S RTV+ DP+L + ++ VP +IA+ L V +NKK+L DC
Sbjct: 352 GKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPG 411
Query: 178 ---LRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+ E G + R G + DL+IGD++ R L D D VL NR PS+H+ S+++
Sbjct: 412 ANYVIDRESGFKRFLRFGNRNRI--ADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMA 469
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+V P ++ N C P DFDGD ++ ++PQ+ A+ E EL+ + L++ ++
Sbjct: 470 HLVKVRPWRTL-RFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRN 528
Query: 529 GRNLLSLSQDSLTAAYML 582
G +++ +QD +TAAY+L
Sbjct: 529 GEPIIAATQDFITAAYLL 546
[45][TOP]
>UniRef100_C8VPJ2 Putative uncharacterized protein n=2 Tax=Emericella nidulans
RepID=C8VPJ2_EMENI
Length = 1445
Score = 113 bits (282), Expect = 1e-23
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK-- 195
GKR D S RTV+ DP+L + E+ VP +A+++ VNR NK+ L C +R +K
Sbjct: 372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQC--VRNGQKKW 429
Query: 196 -GHFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
G + +KG P+ K LQ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 430 PGANYIIKKGNPLKTMLKYGNLKFIADQLQEGDIVERHIEDGDIVLFNRQPSLHKLSILS 489
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++
Sbjct: 490 HFAKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKN 548
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++ QD ++AAY+L
Sbjct: 549 GEPIIGAIQDFISAAYLL 566
[46][TOP]
>UniRef100_Q2PYQ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharella sp.
M15 RepID=Q2PYQ2_9FUNG
Length = 547
Score = 113 bits (282), Expect = 1e-23
Identities = 69/195 (35%), Positives = 110/195 (56%), Gaps = 12/195 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++++ E+GVP IA +L VN N++ L RL+
Sbjct: 69 LMGKRVDFSARTVITGDPNISIDEVGVPRSIARNLTFPEIVNDYNRERL-----QRLVAN 123
Query: 196 GH------FKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G+ +V R G V+ + L +GD + R + DGD V+ NR PS+H+ S
Sbjct: 124 GYNEYPGANRVIRAGGDVINLRHASRTSDILLNVGDRVERHILDGDYVIFNRQPSLHKMS 183
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRV+P S+ +N SP DFDGD ++ + PQS R E+ E++ + RQ+I+
Sbjct: 184 MMGHRVRVMPYST-FRLNLSVTSPYNADFDGDEMNLHAPQSYETRAEIQEIMQVPRQIIS 242
Query: 520 GQSGRNLLSLSQDSL 564
+ + ++ + QD+L
Sbjct: 243 PKHNQPVMGIVQDTL 257
[47][TOP]
>UniRef100_P17546 DNA-directed RNA polymerase II subunit RPB1-A n=1 Tax=Trypanosoma
brucei brucei RepID=RPB1A_TRYBB
Length = 1766
Score = 112 bits (281), Expect = 2e-23
Identities = 66/194 (34%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 348 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYPS 407
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ G L +D L IGD++ R + +GD VL NR P++H+ SM+ VR
Sbjct: 408 ANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVR 467
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL S+ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 468 VLNYST-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 526
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 527 MGIVQDSLLGSYRL 540
[48][TOP]
>UniRef100_UPI000022105F Hypothetical protein CBG05787 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI000022105F
Length = 1402
Score = 112 bits (279), Expect = 3e-23
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNREN----KKNLLDCCELR-- 183
GKR D S RTV+ DP+L + ++GVP +A +L VN N +K +++ ++
Sbjct: 354 GKRVDFSGRTVISPDPNLRIDQVGVPVHVAMTLTFPEIVNASNIDKMRKLIVNGSDVHPG 413
Query: 184 ---LLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L++K GH K+ + G L K+L++GD + R L D D VL NR PS+H+ S++S
Sbjct: 414 ANYLVDKKTGHKKLLKYGNREEL--AKNLRLGDTVERHLDDNDVVLFNRQPSLHKISIMS 471
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
+V+P N C+P DFDGD ++ ++PQ+ A+ E +EL+ + LI +S
Sbjct: 472 HRAKVMP-GRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRS 530
Query: 529 GRNLLSLSQDSLTAAYML 582
G L++ QD +T Y+L
Sbjct: 531 GEPLVAAIQDFITGGYLL 548
[49][TOP]
>UniRef100_A8A925 DNA-directed RNA polymerase n=1 Tax=Ignicoccus hospitalis KIN4/I
RepID=A8A925_IGNH4
Length = 889
Score = 112 bits (279), Expect = 3e-23
Identities = 71/201 (35%), Positives = 115/201 (57%), Gaps = 14/201 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKG- 198
GKR D S RTV+ DP+++++E+GVP ++A++L V V V N + + +L+ G
Sbjct: 324 GKRVDFSARTVISPDPNISINEVGVPIEVAKTLTVPVKVTPWNIEEMR-----KLVINGP 378
Query: 199 ------HFKVCRKGRPVVLYKKKD-------LQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
++ + + GR + L KD LQ G + R L DGD VL NR PS+H+ S
Sbjct: 379 DKWPGANYVIMKDGRRIDLRYAKDRKIIAESLQPGWTVERHLQDGDVVLFNRQPSLHRMS 438
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
+++ VRVLP + PL C P DFDGD ++ ++PQS AR E EL+ +++ +++
Sbjct: 439 IMAHLVRVLP-GKTFRLCPLVCPPYNADFDGDEMNLHVPQSEEARAEALELMLVEKHILS 497
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
+ G ++ QD ++ AY+L
Sbjct: 498 PRYGGPIIGGLQDYISGAYLL 518
[50][TOP]
>UniRef100_Q01DV6 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
RepID=Q01DV6_OSTTA
Length = 1406
Score = 111 bits (278), Expect = 4e-23
Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 8/195 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK-- 195
GKR D S RTV+ DP+L + E+G+P IA+++ VNR N L + + E
Sbjct: 373 GKRVDFSARTVISPDPNLGIDEVGIPIYIAKTMTYPEVVNRHNIAMLRERVRNGMAEHPG 432
Query: 196 -GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSV 357
K G + Y + +L+ GD++ R L DGD +L NR PS+H+ S+++
Sbjct: 433 ANFVKFASGGMQYLKYGDRRKIASELRFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKA 492
Query: 358 RVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRN 537
RV+P ++ +N C+P DFDGD ++ + PQ+ AR E +L+ + L ++G
Sbjct: 493 RVMPCRTL-RLNECVCTPYNADFDGDEMNIHCPQTEEARAEAMQLMGVHHNLCTPKNGEI 551
Query: 538 LLSLSQDSLTAAYML 582
L++ +QD LTAA++L
Sbjct: 552 LVAATQDFLTAAFLL 566
[51][TOP]
>UniRef100_Q95W43 DNA-directed RNA polymerase n=1 Tax=Trypanosoma cruzi
RepID=Q95W43_TRYCR
Length = 1731
Score = 111 bits (278), Expect = 4e-23
Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP IA +L V+ NKK L + +
Sbjct: 331 LMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVRRPVYPS 390
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ G L ++D L IGD++ R + +GD VL NR P++H+ SM+ VR
Sbjct: 391 ANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVR 450
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 451 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 509
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 510 MGIVQDSLLGSYRL 523
[52][TOP]
>UniRef100_Q584K3 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
RepID=Q584K3_9TRYP
Length = 1765
Score = 111 bits (278), Expect = 4e-23
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 347 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYPS 406
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ G L +D L IGD++ R + +GD VL NR P++H+ SM+ VR
Sbjct: 407 ANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVR 466
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 467 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 525
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 526 MGIVQDSLLGSYRL 539
[53][TOP]
>UniRef100_Q57YU2 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
RepID=Q57YU2_9TRYP
Length = 1765
Score = 111 bits (278), Expect = 4e-23
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 347 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYPS 406
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ G L +D L IGD++ R + +GD VL NR P++H+ SM+ VR
Sbjct: 407 ANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVR 466
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 467 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 525
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 526 MGIVQDSLLGSYRL 539
[54][TOP]
>UniRef100_Q4DDX5 DNA-directed RNA polymerase n=1 Tax=Trypanosoma cruzi
RepID=Q4DDX5_TRYCR
Length = 1731
Score = 111 bits (278), Expect = 4e-23
Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP IA +L V+ NKK L + +
Sbjct: 331 LMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVRRPVYPS 390
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ G L ++D L IGD++ R + +GD VL NR P++H+ SM+ VR
Sbjct: 391 ANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVR 450
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 451 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 509
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 510 MGIVQDSLLGSYRL 523
[55][TOP]
>UniRef100_C9ZMF2 RNA polymerase IIA largest subunit, putative n=3 Tax=Trypanosoma
brucei RepID=C9ZMF2_TRYBG
Length = 1765
Score = 111 bits (278), Expect = 4e-23
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 347 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYPS 406
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ G L +D L IGD++ R + +GD VL NR P++H+ SM+ VR
Sbjct: 407 ANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVR 466
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 467 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 525
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 526 MGIVQDSLLGSYRL 539
[56][TOP]
>UniRef100_Q2PYT0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Physoderma maydis
RepID=Q2PYT0_9FUNG
Length = 748
Score = 111 bits (278), Expect = 4e-23
Identities = 67/190 (35%), Positives = 109/190 (57%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ E+GVP IA +L V + N LL+ LE
Sbjct: 269 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIAXNLTFPEMVTKYNIDRLLELIRNGPLEH 328
Query: 196 --GHFKVCRKGRPVVLY---KKKDL--QIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K DL Q G ++ R + DGD ++ NR PS+H+ SM+
Sbjct: 329 PGAKYVIRENGERIDLRFARNKSDLTLQHGWIVERHVNDGDLIIFNRQPSLHKMSMMGHR 388
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+RV+P S+ +N SP DFDGD ++ ++PQS+ AR E+ E+ + +Q+++ Q+ +
Sbjct: 389 IRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSMEARAEVQEICMVPKQIVSPQANK 447
Query: 535 NLLSLSQDSL 564
+ + QD+L
Sbjct: 448 PCMGIVQDTL 457
[57][TOP]
>UniRef100_Q26794 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
RepID=Q26794_9TRYP
Length = 1765
Score = 111 bits (277), Expect = 5e-23
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 347 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARRTVYPS 406
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ G L +D L IGD++ R + +GD VL NR P++H+ SM+ VR
Sbjct: 407 ANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVR 466
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 467 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 525
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 526 MGIVQDSLLGSYRL 539
[58][TOP]
>UniRef100_Q2PYS5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hyaloraphidium
curvatum RepID=Q2PYS5_HYACU
Length = 1002
Score = 111 bits (277), Expect = 5e-23
Identities = 66/189 (34%), Positives = 107/189 (56%), Gaps = 7/189 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++++ E+GVP IA +L V N L + LE
Sbjct: 263 LMGKRVDFSSRTVITGDPNISIDEVGVPRSIARTLTFPEIVTPHNVARLQELVRNGALEH 322
Query: 196 --GHFKVCRKGRPVVLY-----KKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
++ V + G + L + LQIGD + R L DGD V+ NR PS+H+ SM+
Sbjct: 323 PGANYIVRQSGDRISLKFVPQAGDQPLQIGDTVERHLQDGDYVIFNRQPSLHKMSMMGHR 382
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+++P S+ +N +P DFDGD ++ + PQS R E+ E++ + RQ+I+ Q+ +
Sbjct: 383 VKIMPFST-FRLNLSVTTPYNADFDGDEMNLHAPQSYETRAEIKEIMMVPRQIISPQANK 441
Query: 535 NLLSLSQDS 561
++ + QD+
Sbjct: 442 PVMGIVQDT 450
[59][TOP]
>UniRef100_P17545 DNA-directed RNA polymerase II subunit RPB1-B n=1 Tax=Trypanosoma
brucei brucei RepID=RPB1B_TRYBB
Length = 1766
Score = 111 bits (277), Expect = 5e-23
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP +A +L VN NKK L + +
Sbjct: 348 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARRTVYPS 407
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
++ G L +D L IGD++ R + +GD VL NR P++H+ SM+ VR
Sbjct: 408 ANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVR 467
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 468 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 526
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 527 MGIVQDSLLGSYRL 540
[60][TOP]
>UniRef100_Q8ISB0 DNA-directed RNA polymerase n=1 Tax=Trypanosoma cruzi
RepID=Q8ISB0_TRYCR
Length = 1731
Score = 110 bits (276), Expect = 6e-23
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + E+GVP IA +L V+ NKK L + +
Sbjct: 331 LMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVRRPVYPS 390
Query: 196 GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
+ G L ++D L IGD++ R + +GD VL NR P++H+ SM+ VR
Sbjct: 391 AFYIHHPNGTSTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVR 450
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
VL ++ +N C +P DFDGD ++ ++PQS+ + EL E++ + + ++
Sbjct: 451 VLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPC 509
Query: 541 LSLSQDSLTAAYML 582
+ + QDSL +Y L
Sbjct: 510 MGIVQDSLLGSYRL 523
[61][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 110 bits (275), Expect = 8e-23
Identities = 68/190 (35%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE- 192
++GKR D S RTV+ GDP++++ E+GVP I +L VN N+ +L E
Sbjct: 276 LMGKRVDFSARTVITGDPNISIDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVANGTNEY 335
Query: 193 KGHFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
G +V R +V K L IGD + R L DGD ++ NR PS+H+ SM+
Sbjct: 336 PGANRVIRANGDIVSLKHTAGSGETLLNIGDRVERHLVDGDYIIFNRQPSLHKMSMMGHK 395
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ + PQS R E+ E++ + RQ+I+ + +
Sbjct: 396 VRVMPFST-FRLNLSVTSPYNADFDGDEMNLHAPQSYETRAEIMEIMRVPRQIISPKHNQ 454
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 455 PVMGIVQDTL 464
[62][TOP]
>UniRef100_Q2PYR5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mortierella
verticillata RepID=Q2PYR5_9FUNG
Length = 1016
Score = 110 bits (274), Expect = 1e-22
Identities = 70/188 (37%), Positives = 109/188 (57%), Gaps = 5/188 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ E+GVP IA +L V N L E
Sbjct: 269 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARTLTYPELVTPYNIDKLQKLVRNGPTEH 328
Query: 196 -GHFKVCRK-GRPVVL-YKKKD--LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVR 360
G V R G+ + L + K++ LQ+G + R + DGD V+ NR PS+H+ SM+ +R
Sbjct: 329 PGAVYVIRDDGQRIDLRWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIR 388
Query: 361 VLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNL 540
V+P S+ +N SP DFDGD ++ ++PQSV R E+ E+ + RQ+++ QS + +
Sbjct: 389 VMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPV 447
Query: 541 LSLSQDSL 564
+ + QD+L
Sbjct: 448 MGIVQDTL 455
[63][TOP]
>UniRef100_A0AAR2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Geosiphon pyriformis
RepID=A0AAR2_9GLOM
Length = 649
Score = 110 bits (274), Expect = 1e-22
Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 7/192 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++++ E+GVP IA +L V N ++L + E
Sbjct: 111 LMGKRVDFSARTVITGDPNISVDEVGVPRSIARNLTYPELVTPYNIEHLQELVRNGPTEH 170
Query: 196 --GHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R L DGD V+ NR PS+H+ SM+
Sbjct: 171 PGAKYVIRDTGERIDLKHHKRAGEVRLQYGWKVERHLNDGDVVIFNRQPSLHKMSMMGHK 230
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQSV R E+ E+ + +Q+++ QS +
Sbjct: 231 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSVETRAEITEICMVPKQIVSPQSNK 289
Query: 535 NLLSLSQDSLTA 570
++ + QD+L A
Sbjct: 290 PVMGIVQDTLCA 301
[64][TOP]
>UniRef100_O28391 DNA-directed RNA polymerase n=1 Tax=Archaeoglobus fulgidus
RepID=O28391_ARCFU
Length = 867
Score = 110 bits (274), Expect = 1e-22
Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 10/197 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGH 201
GKR + S RTV+ DP L+++E+GVP +IAE L V +YV +N +D +L H
Sbjct: 310 GKRVNFSARTVISPDPCLSINEVGVPREIAEELTVPIYVTPQN----IDMAREFVLRSEH 365
Query: 202 FKVCRKGRP------VVLYKKKDL----QIGDLLYRPLTDGDKVLINRPPSIHQHSMISL 351
K RP V+ K++L + G ++ R L DGD VL NR PS+H+ S+++
Sbjct: 366 PKANYIVRPDGRRIRVIESNKEELAEKLEPGWIVERQLMDGDIVLFNRQPSLHRMSIMAH 425
Query: 352 SVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSG 531
VRVLP + +NP C P DFDGD ++ ++PQS+ A+ E L+A+ +++ + G
Sbjct: 426 YVRVLPYKTF-RLNPAVCPPYNADFDGDEMNLHVPQSLEAQAEAKILMAVQEHILSPRFG 484
Query: 532 RNLLSLSQDSLTAAYML 582
++ D ++ Y+L
Sbjct: 485 GPIIGGIHDHISGLYLL 501
[65][TOP]
>UniRef100_A8X1M6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae
RepID=A8X1M6_CAEBR
Length = 1435
Score = 109 bits (273), Expect = 1e-22
Identities = 69/197 (35%), Positives = 111/197 (56%), Gaps = 11/197 (5%)
Frame = +1
Query: 25 KRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNREN----KKNLLDCCELR--- 183
KR D S RTV+ DP+L + ++GVP +A +L VN N +K +++ ++
Sbjct: 372 KRVDFSGRTVISPDPNLRIDQVGVPVHVAMTLTFPEIVNASNIDKMRKLIVNGSDVHPGA 431
Query: 184 --LLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISL 351
L++K GH K+ + G L K+L++GD + R L D D VL NR PS+H+ S++S
Sbjct: 432 NYLVDKKTGHKKLLKYGNREEL--AKNLRLGDTVERHLDDNDVVLFNRQPSLHKISIMSH 489
Query: 352 SVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSG 531
+V+P N C+P DFDGD ++ ++PQ+ A+ E +EL+ + LI +SG
Sbjct: 490 RAKVMP-GRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSG 548
Query: 532 RNLLSLSQDSLTAAYML 582
L++ QD +T Y+L
Sbjct: 549 EPLVAAIQDFITGGYLL 565
[66][TOP]
>UniRef100_Q18566 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis elegans
RepID=Q18566_CAEEL
Length = 1400
Score = 109 bits (272), Expect = 2e-22
Identities = 69/198 (34%), Positives = 113/198 (57%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNREN----KKNLLDCCELR-- 183
GKR D S RTV+ DP+L + ++GVP +A +L VN N ++ +++ ++
Sbjct: 354 GKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG 413
Query: 184 ---LLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L+EK G+ K+ + G+ L K+L++GD + R L D D VL NR PS+H+ S++S
Sbjct: 414 ANYLVEKKTGNKKLLKYGKRDEL--AKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMS 471
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
+V+P N C+P DFDGD ++ ++PQ+ A+ E +EL+ + LI +S
Sbjct: 472 HRAKVMP-GRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRS 530
Query: 529 GRNLLSLSQDSLTAAYML 582
G L++ QD +T Y+L
Sbjct: 531 GEPLVAAIQDFITGGYLL 548
[67][TOP]
>UniRef100_Q2PYQ8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Paraglomus occultum
RepID=Q2PYQ8_9GLOM
Length = 847
Score = 109 bits (272), Expect = 2e-22
Identities = 69/192 (35%), Positives = 110/192 (57%), Gaps = 7/192 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++++ E+GVP IA +L V R N +L + E
Sbjct: 105 LMGKRVDFSARTVITGDPNISVDEVGVPRSIARNLTYPELVTRLNIDHLQELVRNGPSEH 164
Query: 196 --GHFKVCRKGRPVVL--YKKKD---LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L YK+ LQIG + R + DGD V+ NR PS+H+ SM+
Sbjct: 165 PGAKYVIRDTGERIDLKHYKRAGEVRLQIGWKVERHIDDGDIVIFNRQPSLHKMSMMGHR 224
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N +P DFDGD ++ +IPQSV + E+ E+ + +Q+++ QS +
Sbjct: 225 VRVMPYSTF-RLNLSVTTPYNADFDGDEMNMHIPQSVETKAEIMEICMVPKQIVSPQSNK 283
Query: 535 NLLSLSQDSLTA 570
++ + QD+L A
Sbjct: 284 PVMGIVQDTLCA 295
[68][TOP]
>UniRef100_Q2PYQ3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phycomyces
blakesleeanus RepID=Q2PYQ3_PHYBL
Length = 564
Score = 109 bits (272), Expect = 2e-22
Identities = 69/190 (36%), Positives = 107/190 (56%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N L LE
Sbjct: 105 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARNLTYPEIVTPYNIDKLQVLVRNGPLEH 164
Query: 196 --GHFKVCRKGRPVVL-YKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y+K+ LQ G + R + DGD V+ NR PS+H+ SM+
Sbjct: 165 PGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDGDVVIFNRQPSLHKMSMMGHR 224
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS+ R E+ E+ + +Q+++ QS +
Sbjct: 225 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSNK 283
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 284 PVMGIVQDTL 293
[69][TOP]
>UniRef100_A6SCV1 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6SCV1_BOTFB
Length = 1468
Score = 109 bits (272), Expect = 2e-22
Identities = 68/196 (34%), Positives = 111/196 (56%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC-ELRLLEKG 198
GKR D S RTV+ DP+L + E+ VP +A++L V R+N + L C + G
Sbjct: 365 GKRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGPNVHPG 424
Query: 199 HFKVCRKG---RPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
++ +K + + + K+D L+IGD++ R L DGD VL NR PS+H+ S++S
Sbjct: 425 AQQIIKKDSNHKISLKFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLHKLSIMSHY 484
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L ++G
Sbjct: 485 AKIRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLSTPKNGE 543
Query: 535 NLLSLSQDSLTAAYML 582
++S +QD +TAAY+L
Sbjct: 544 PIISATQDFITAAYLL 559
[70][TOP]
>UniRef100_C8SAT5 DNA-directed RNA polymerase subunit A' n=1 Tax=Ferroglobus placidus
DSM 10642 RepID=C8SAT5_FERPL
Length = 870
Score = 109 bits (272), Expect = 2e-22
Identities = 65/193 (33%), Positives = 108/193 (55%), Gaps = 6/193 (3%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGH 201
GKR + S RTV+ DP+L+++E+GVP IAE L V +YV N + + K +
Sbjct: 310 GKRVNFSARTVISPDPNLSINEVGVPKVIAEELTVPIYVTPNNIEEAREYVLRTEHPKAN 369
Query: 202 FKVCRKGRPVVLYKK------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVRV 363
+ + GR + + + L+ G ++ R L DGD VL NR PS+H+ S+++ VRV
Sbjct: 370 YVIRPDGRRIRVIDANREELAEKLEPGWIVERQLKDGDIVLFNRQPSLHRMSIMAHYVRV 429
Query: 364 LPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLL 543
LP + +NP C P DFDGD ++ ++PQS+ A+ E L+A+ +++ + G ++
Sbjct: 430 LPYKTF-RLNPAVCPPYNADFDGDEMNLHVPQSIEAQAEAKILMAVQEHILSPRFGGPII 488
Query: 544 SLSQDSLTAAYML 582
D ++ Y+L
Sbjct: 489 GGIHDHISGLYLL 501
[71][TOP]
>UniRef100_Q5KTW7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entamoeba
histolytica RepID=Q5KTW7_ENTHI
Length = 1589
Score = 108 bits (271), Expect = 2e-22
Identities = 65/192 (33%), Positives = 108/192 (56%), Gaps = 3/192 (1%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE- 192
++GKR D S RTV+ DP+L++ E+GVP +A+ L V + NK+ L + +
Sbjct: 290 LMGKRVDFSARTVISPDPNLSMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVSAGMNDY 349
Query: 193 KGHFKVCRKGRPVVLYK--KKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVRVL 366
G F + RK +K + IGD ++R + +GD V+ NR PS+H+ SM+ VRVL
Sbjct: 350 PGAFMLERKNGQTYRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVL 409
Query: 367 PISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLS 546
P S+ +N +P DFDGD ++ ++PQ++ AR E+ L+ Q+I Q ++
Sbjct: 410 PFST-FRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQIITPQDNGPIMG 468
Query: 547 LSQDSLTAAYML 582
+ QD+ +Y++
Sbjct: 469 IVQDTQCGSYLI 480
[72][TOP]
>UniRef100_C4M5C2 DNA-directed RNA polymerase n=2 Tax=Entamoeba histolytica
RepID=C4M5C2_ENTHI
Length = 1636
Score = 108 bits (271), Expect = 2e-22
Identities = 65/192 (33%), Positives = 108/192 (56%), Gaps = 3/192 (1%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE- 192
++GKR D S RTV+ DP+L++ E+GVP +A+ L V + NK+ L + +
Sbjct: 337 LMGKRVDFSARTVISPDPNLSMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVSAGMNDY 396
Query: 193 KGHFKVCRKGRPVVLYK--KKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVRVL 366
G F + RK +K + IGD ++R + +GD V+ NR PS+H+ SM+ VRVL
Sbjct: 397 PGAFMLERKNGQTYRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVL 456
Query: 367 PISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLS 546
P S+ +N +P DFDGD ++ ++PQ++ AR E+ L+ Q+I Q ++
Sbjct: 457 PFST-FRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQIITPQDNGPIMG 515
Query: 547 LSQDSLTAAYML 582
+ QD+ +Y++
Sbjct: 516 IVQDTQCGSYLI 527
[73][TOP]
>UniRef100_Q2PYQ1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Olpidium brassicae
RepID=Q2PYQ1_9FUNG
Length = 585
Score = 108 bits (271), Expect = 2e-22
Identities = 68/193 (35%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ E+GVP IA +L V N + + E
Sbjct: 105 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPEIVTPYNIDRMQELVRNGPNEH 164
Query: 196 --GHFKVCRKGRPVVL-YKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
F + G + L Y K+ LQ+G + R L DGD ++ NR PS+H+ SM+
Sbjct: 165 PGAKFVIRDTGERIDLRYHKRSGDIPLQVGWKVERHLVDGDVIIFNRQPSLHKMSMMGHK 224
Query: 355 VRVLPISSV---VSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQ 525
VRV+P S+ +S++P SP DFDGD ++ ++PQS+ AR E+NE+ + +Q++
Sbjct: 225 VRVMPYSTFRLNLSVSP---SPYNADFDGDEMNMHVPQSIEARAEINEICMVPKQIVAPA 281
Query: 526 SGRNLLSLSQDSL 564
+ + + + QD+L
Sbjct: 282 ANKPCMGIVQDTL 294
[74][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FCL2_NANOT
Length = 1748
Score = 108 bits (271), Expect = 2e-22
Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L +
Sbjct: 352 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLG-----Q 406
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPS 324
L++ G + + G + L K LQ G + R L DGD +L NR PS
Sbjct: 407 LVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPS 466
Query: 325 IHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALD 504
+H+ SM+S VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L +
Sbjct: 467 LHKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVP 525
Query: 505 RQLINGQSGRNLLSLSQDSLTAAYML 582
+++ Q L+ + QD+L Y +
Sbjct: 526 LNIVSPQRNGPLMGIVQDTLCGIYKI 551
[75][TOP]
>UniRef100_B6QI35 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QI35_PENMQ
Length = 1439
Score = 108 bits (271), Expect = 2e-22
Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE-KG 198
GKR D S RTV+ DP+L + E+ VP +A+++ V R N + L + + G
Sbjct: 369 GKRVDFSGRTVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLQKLVRNGINKWPG 428
Query: 199 HFKVCRKGRPVVLYKK----------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
KV +K + + K K LQIGDL+ R L DGD L NR PS+H+ S++S
Sbjct: 429 AKKVIKKDSGLTISLKHSAKSLDTISKQLQIGDLVERHLVDGDIALYNRQPSLHKLSILS 488
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+V P + +N C+P DFDGD ++ +IPQ+ AR E EL+ + L+ ++
Sbjct: 489 HFVKVRPYRTF-RMNECVCNPYNADFDGDEMNLHIPQTEEARSEAMELMGVKNNLVTPKN 547
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++ QD ++AAY+L
Sbjct: 548 GEPIIGAIQDFISAAYVL 565
[76][TOP]
>UniRef100_A7EYX3 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980
UF-70 RepID=A7EYX3_SCLS1
Length = 1459
Score = 108 bits (271), Expect = 2e-22
Identities = 68/196 (34%), Positives = 111/196 (56%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC-ELRLLEKG 198
GKR D S RTV+ DP+L + E+ VP +A++L V R+N + L C + G
Sbjct: 368 GKRVDFSGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRKCVINGPNVHPG 427
Query: 199 HFKVCRKG---RPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
++ +K + + + K+D L+IGD++ R L DGD VL NR PS+H+ S++S
Sbjct: 428 AQQIVKKDSNHKISLKFAKRDNEAKFLKIGDVVERHLEDGDIVLFNRQPSLHKLSIMSHY 487
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L ++G
Sbjct: 488 AKIRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLSTPKNGE 546
Query: 535 NLLSLSQDSLTAAYML 582
++S +QD +TAAY+L
Sbjct: 547 PIISATQDFITAAYLL 562
[77][TOP]
>UniRef100_A1YIA6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trichophyton rubrum
RepID=A1YIA6_TRIRU
Length = 1015
Score = 108 bits (271), Expect = 2e-22
Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L +
Sbjct: 268 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLG-----Q 322
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPS 324
L++ G + + G + L K LQ G + R L DGD +L NR PS
Sbjct: 323 LVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPS 382
Query: 325 IHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALD 504
+H+ SM+S VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L +
Sbjct: 383 LHKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVP 441
Query: 505 RQLINGQSGRNLLSLSQDSLTAAYML 582
+++ Q L+ + QD+L Y +
Sbjct: 442 LNIVSPQRNGPLMGIVQDTLCGIYKI 467
[78][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1E2G9_COCIM
Length = 1750
Score = 108 bits (270), Expect = 3e-22
Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLG-----Q 407
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPS 324
L++ G + + G + L K LQ G + R L DGD +L NR PS
Sbjct: 408 LVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPS 467
Query: 325 IHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALD 504
+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L +
Sbjct: 468 LHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVP 526
Query: 505 RQLINGQSGRNLLSLSQDSLTAAYML 582
+++ Q L+ + QD+L Y +
Sbjct: 527 LNIVSPQRNGPLMGIVQDTLCGIYKI 552
[79][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735
delta SOWgp RepID=C5PAJ4_COCP7
Length = 1746
Score = 108 bits (270), Expect = 3e-22
Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLG-----Q 407
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPS 324
L++ G + + G + L K LQ G + R L DGD +L NR PS
Sbjct: 408 LVDNGPDVHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPS 467
Query: 325 IHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALD 504
+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++PQS AR ELN+L +
Sbjct: 468 LHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVP 526
Query: 505 RQLINGQSGRNLLSLSQDSLTAAYML 582
+++ Q L+ + QD+L Y +
Sbjct: 527 LNIVSPQRNGPLMGIVQDTLCGIYKI 552
[80][TOP]
>UniRef100_B3T842 DNA-directed RNA polymerase (Fragment) n=1 Tax=uncultured marine
crenarchaeote HF4000_APKG4H17 RepID=B3T842_9ARCH
Length = 993
Score = 108 bits (270), Expect = 3e-22
Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKG- 198
GKR D S RTV+ DP+L L E+GVP Q+A L + V N + L +L+ G
Sbjct: 47 GKRVDFSSRTVISPDPNLDLGEVGVPVQVATKLTIPEIVTEWNIEKL-----KKLVINGP 101
Query: 199 ------HFKVCRKGRPVVLYKKKD-------LQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
++ V G + L +D L+IG L+ R L+DGD VL NR PS+HQ S
Sbjct: 102 DTFPGVNYIVRPDGVKIRLDFVEDRSIIADSLEIGYLVERHLSDGDVVLFNRQPSLHQMS 161
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
+++ VRVLP ++P C P DFDGD ++ ++PQS AR E L+ + QLI+
Sbjct: 162 IMAHHVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAIMLMRVQEQLIS 220
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
+ G ++ +D +T AY+L
Sbjct: 221 PRFGGPIIGGLRDFITGAYLL 241
[81][TOP]
>UniRef100_B3T303 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
HF4000_ANIW93I24 RepID=B3T303_9ARCH
Length = 1264
Score = 108 bits (270), Expect = 3e-22
Identities = 74/201 (36%), Positives = 106/201 (52%), Gaps = 14/201 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKG- 198
GKR D S RTV+ DP+L L E+GVP IA L + V N + L +L+ G
Sbjct: 318 GKRVDFSSRTVISPDPNLDLGEVGVPTSIASKLTIPEIVTEWNIEKL-----KKLVINGP 372
Query: 199 ------HFKVCRKGRPV-------VLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
++ V G + L L+IG L+ R L+DGD VL NR PS+HQ S
Sbjct: 373 NTFPGVNYIVRPDGVKIRLDFVEDTLQVANQLEIGYLVERHLSDGDVVLFNRQPSLHQMS 432
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
+++ VRVLP ++P C P DFDGD ++ ++PQS AR E L+ + QLI+
Sbjct: 433 IMAHHVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQEQLIS 491
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
+ G ++ +D +T AY+L
Sbjct: 492 PRFGGPIIGALRDFITGAYLL 512
[82][TOP]
>UniRef100_Q2PYQ4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Orphella haysii
RepID=Q2PYQ4_9FUNG
Length = 750
Score = 108 bits (269), Expect = 4e-22
Identities = 69/192 (35%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++++ ++GVP IA +L V V N L E
Sbjct: 283 LMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTVPEAVTPYNIATLQMMVRNGPTEH 342
Query: 196 --GHFKVCRKGRPVVL-YKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ LQIG + R L D D V+ NR PS+H+ SM+
Sbjct: 343 PGAKYVIRDTGERIDLRYNKRGGDIPLQIGYRVERHLVDNDVVIFNRQPSLHKMSMMGHR 402
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+ E+ + RQ+++ QS +
Sbjct: 403 VRVMPFSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIKEICMVPRQIVSPQSNK 461
Query: 535 NLLSLSQDSLTA 570
++ + QD+L A
Sbjct: 462 PVMGIVQDTLAA 473
[83][TOP]
>UniRef100_C5JRK1 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis
SLH14081 RepID=C5JRK1_AJEDS
Length = 1456
Score = 108 bits (269), Expect = 4e-22
Identities = 71/198 (35%), Positives = 106/198 (53%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC---------- 171
GKR D S RTV+ DP+L + E+ VP IA ++ V R NK+ L
Sbjct: 372 GKRVDFSARTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431
Query: 172 CELRLLEKGHFKVCRK-GRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+ +FK+ K G P ++ DL+ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYVFKKSQNFKMNLKFGNPNLV--ANDLEEGDIVERHIEDGDIVLFNRQPSLHKLSILS 489
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++
Sbjct: 490 HFAKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKN 548
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++S QD +TAAYML
Sbjct: 549 GEPIISAIQDFITAAYML 566
[84][TOP]
>UniRef100_C5GRI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3
RepID=C5GRI8_AJEDR
Length = 1456
Score = 108 bits (269), Expect = 4e-22
Identities = 71/198 (35%), Positives = 106/198 (53%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC---------- 171
GKR D S RTV+ DP+L + E+ VP IA ++ V R NK+ L
Sbjct: 372 GKRVDFSARTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431
Query: 172 CELRLLEKGHFKVCRK-GRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+ +FK+ K G P ++ DL+ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYVFKKSQNFKMNLKFGNPNLV--ANDLEEGDIVERHIEDGDIVLFNRQPSLHKLSILS 489
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++
Sbjct: 490 HFAKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKN 548
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++S QD +TAAYML
Sbjct: 549 GEPIISAIQDFITAAYML 566
[85][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1H3Q4_PARBA
Length = 1748
Score = 108 bits (269), Expect = 4e-22
Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L +
Sbjct: 359 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGE----- 413
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPS 324
L++ G + + G + L K LQ G + R + DGD +L NR PS
Sbjct: 414 LVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPS 473
Query: 325 IHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALD 504
+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++PQS AR EL++L +
Sbjct: 474 LHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVP 532
Query: 505 RQLINGQSGRNLLSLSQDSLTAAYML 582
Q+++ Q L+ + QD+L Y +
Sbjct: 533 LQIVSPQRNGPLMGIVQDTLCGIYKI 558
[86][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GHL1_PARBD
Length = 1746
Score = 108 bits (269), Expect = 4e-22
Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGE----- 407
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPS 324
L++ G + + G + L K LQ G + R + DGD +L NR PS
Sbjct: 408 LVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPS 467
Query: 325 IHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALD 504
+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++PQS AR EL++L +
Sbjct: 468 LHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVP 526
Query: 505 RQLINGQSGRNLLSLSQDSLTAAYML 582
Q+++ Q L+ + QD+L Y +
Sbjct: 527 LQIVSPQRNGPLMGIVQDTLCGIYKI 552
[87][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SE75_PARBP
Length = 2106
Score = 108 bits (269), Expect = 4e-22
Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGE----- 407
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPS 324
L++ G + + G + L K LQ G + R + DGD +L NR PS
Sbjct: 408 LVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPS 467
Query: 325 IHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALD 504
+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++PQS AR EL++L +
Sbjct: 468 LHKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVP 526
Query: 505 RQLINGQSGRNLLSLSQDSLTAAYML 582
Q+++ Q L+ + QD+L Y +
Sbjct: 527 LQIVSPQRNGPLMGIVQDTLCGIYKI 552
[88][TOP]
>UniRef100_B8MLB5 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8MLB5_TALSN
Length = 1441
Score = 108 bits (269), Expect = 4e-22
Identities = 71/198 (35%), Positives = 107/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE-KG 198
GKR D S RTV+ DP+L + E+ VP +A+++ V R N + L + + G
Sbjct: 370 GKRVDFSGRTVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLRKLVRNGINKWPG 429
Query: 199 HFKVCRKGRPVVLYKKKD----------LQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
KV +K + + K LQIGDL+ R L DGD L NR PS+H+ S++S
Sbjct: 430 AKKVIKKDSGLTISLKHSARSLDLIAAQLQIGDLVERHLVDGDIALYNRQPSLHKLSILS 489
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+V P + +N C+P DFDGD ++ +IPQ+ AR E EL+ + L+ ++
Sbjct: 490 HFVKVRPYRTF-RMNECVCNPYNADFDGDEMNLHIPQTEEARSEAMELMGVKNNLVTPKN 548
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++ QD ++AAYML
Sbjct: 549 GEPIIGAIQDFISAAYML 566
[89][TOP]
>UniRef100_B6H2R1 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum
Wisconsin 54-1255 RepID=B6H2R1_PENCW
Length = 1448
Score = 108 bits (269), Expect = 4e-22
Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLD-CCELRLLEKG 198
GKR D S RTV+ DP+L + E+ VP +A+++ V R NK+ L C G
Sbjct: 372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKWPG 431
Query: 199 HFKVCRKG---RPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ +KG R ++ Y LQ GDL+ R L DGD VL NR PS+H+ S++S
Sbjct: 432 ANLIVKKGTGFRQMLKYSNTQRMADQLQEGDLVERHLEDGDIVLFNRQPSLHKLSILSHF 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
++ P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 492 AKIRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 535 NLLSLSQDSLTAAYML 582
++S QD ++AAY+L
Sbjct: 551 PIISAIQDFISAAYVL 566
[90][TOP]
>UniRef100_B0E6R8 DNA-directed RNA polymerase n=1 Tax=Entamoeba dispar SAW760
RepID=B0E6R8_ENTDI
Length = 1619
Score = 107 bits (268), Expect = 5e-22
Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 3/192 (1%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE- 192
++GKR D S RTV+ DP+L++ E+GVP +A L V + NK+ L + +
Sbjct: 336 LMGKRVDFSARTVISPDPNLSMDEVGVPTGVARILTFPEVVTQHNKEKLQKLVNAGMNDY 395
Query: 193 KGHFKVCRKGRPVVLYK--KKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVRVL 366
G F + RK +K + IGD ++R + +GD V+ NR PS+H+ SM+ VRVL
Sbjct: 396 PGAFMLERKNGQTYRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVL 455
Query: 367 PISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLS 546
P S+ +N +P DFDGD ++ ++PQ++ AR E+ L+ Q+I Q ++
Sbjct: 456 PFST-FRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQIITPQHNGPVMG 514
Query: 547 LSQDSLTAAYML 582
+ QD+ +Y++
Sbjct: 515 IVQDTQCGSYLI 526
[91][TOP]
>UniRef100_Q2PYR1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spiromyces aspiralis
RepID=Q2PYR1_9FUNG
Length = 1022
Score = 107 bits (268), Expect = 5e-22
Identities = 69/192 (35%), Positives = 107/192 (55%), Gaps = 7/192 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++++ E+GVP IA +L V N + L + E
Sbjct: 282 LMGKRVDFSARTVITGDPNISIDEVGVPRSIARNLTYPEVVTPYNIEKLQELVRNGPTEH 341
Query: 196 --GHFKVCRKGRPVVL-YKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ L IG + R + DGD V+ NR PS+H+ SM+
Sbjct: 342 PGAKYVIRDTGERIDLRYNKRGGDIPLAIGYRVERHIMDGDVVIFNRQPSLHKMSMMGHR 401
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRVLP S+ +N SP DFDGD ++ ++PQS +R E+ E+ + RQ+I+ Q+
Sbjct: 402 VRVLPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEESRAEIKEICMVPRQIISPQANS 460
Query: 535 NLLSLSQDSLTA 570
++ + QD+L A
Sbjct: 461 PVMGIVQDTLCA 472
[92][TOP]
>UniRef100_C5FEK3 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FEK3_NANOT
Length = 1443
Score = 107 bits (268), Expect = 5e-22
Identities = 69/196 (35%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE-KG 198
GKR D S RTV+ DP+L + E+ VP +A ++ V R NK+ L C G
Sbjct: 371 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCVRNGTKTWPG 430
Query: 199 HFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ ++G L+ K L GD++ R L DGD VL NR PS+H+ S++S
Sbjct: 431 ANYLIKQGNSFRLFLKYGNLNMIANQLSEGDIVERHLEDGDIVLFNRQPSLHKLSILSHF 490
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 491 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARSEAMELMGVKNNLATPKNGA 549
Query: 535 NLLSLSQDSLTAAYML 582
+++ QD +TAAY+L
Sbjct: 550 PIIAAIQDFITAAYLL 565
[93][TOP]
>UniRef100_A1YIB0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hydnum repandum
RepID=A1YIB0_9HOMO
Length = 1010
Score = 107 bits (268), Expect = 5e-22
Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 9/192 (4%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL----- 180
++GKR D S RTV+ GDP++ L E+GVP IA +L Y R N+ EL
Sbjct: 270 LMGKRVDFSSRTVITGDPNIMLDEVGVPKSIAMTL---TYPERVTPYNIAQLQELVRNGP 326
Query: 181 RLLEKGHFKVCRKGRPVVL-YKKKD---LQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
R + V G + L Y K+ LQ G ++ R L DGD VL NR PS+H+ SM+S
Sbjct: 327 REYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLRDGDYVLFNRQPSLHKMSMMS 386
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+++P S+ +N P DFDGD ++ ++PQS R EL+++ + RQ+I+ Q+
Sbjct: 387 HRVKLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQA 445
Query: 529 GRNLLSLSQDSL 564
+ ++ + QD+L
Sbjct: 446 NKPVMGIVQDTL 457
[94][TOP]
>UniRef100_UPI000023CDC4 hypothetical protein FG09860.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023CDC4
Length = 2443
Score = 107 bits (267), Expect = 7e-22
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 12/199 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE-------- 177
GKR D S RTV+ DP+L + ++ VP +A++L V R N + L C +
Sbjct: 1362 GKRVDFSGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCVKNGPDVWPG 1421
Query: 178 ----LRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMI 345
++ E G+ + + G Y +DL+ GD++ R L D D VL NR PS+H+ S++
Sbjct: 1422 AQRVIKSDEGGYLQSLKFGNRE--YIARDLKFGDIVERHLEDNDIVLFNRQPSLHKLSIM 1479
Query: 346 SLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQ 525
S +V P + +N C P DFDGD ++ ++PQ+ AR E L+ + L +
Sbjct: 1480 SHLAKVRPWRTF-RLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGIKHNLATPK 1538
Query: 526 SGRNLLSLSQDSLTAAYML 582
+G +++ +QD +TAAY+L
Sbjct: 1539 NGEPVIAATQDFITAAYLL 1557
[95][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
RepID=C5GKA7_AJEDR
Length = 1746
Score = 107 bits (267), Expect = 7e-22
Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPLSIAQTLTYPEVVTPFNIAKLGE----- 407
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPS 324
L++ G + + G + L K LQ G + R + DGD +L NR PS
Sbjct: 408 LVDNGPDIHPGARYVIRNTGERIDLRLHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPS 467
Query: 325 IHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALD 504
+H+ SM+ +RV+P S+ +N +P DFDGD ++ ++PQS AR EL++L +
Sbjct: 468 LHKESMMGHRIRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVP 526
Query: 505 RQLINGQSGRNLLSLSQDSLTAAYML 582
Q+++ Q L+ + QD+L Y +
Sbjct: 527 LQIVSPQRNGPLMGIVQDTLCGIYKI 552
[96][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6QYA7_AJECN
Length = 1747
Score = 107 bits (267), Expect = 7e-22
Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGE----- 407
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPS 324
L++ G + + G + L K LQ G + R + DGD +L NR PS
Sbjct: 408 LVDNGPDIHPGARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPS 467
Query: 325 IHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALD 504
+H+ SM+ +RV+P S+ +N +P DFDGD ++ ++PQS AR EL++L +
Sbjct: 468 LHKESMMGHRIRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVP 526
Query: 505 RQLINGQSGRNLLSLSQDSLTAAYML 582
Q+++ Q L+ + QD+L Y +
Sbjct: 527 LQIVSPQRNGPLMGIVQDTLCGIYKI 552
[97][TOP]
>UniRef100_A2QU24 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QU24_ASPNC
Length = 1450
Score = 107 bits (267), Expect = 7e-22
Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE-KG 198
GKR D S RTV+ DP+L + E+ VP +A+++ V R NK+ L + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Query: 199 HFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ +KG+ L+ K LQ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYIMKKGQTFKLFLKYGNLNMIADQLQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHF 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 492 AKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 535 NLLSLSQDSLTAAYML 582
++S QD ++AAY+L
Sbjct: 551 PIISAIQDFISAAYIL 566
[98][TOP]
>UniRef100_A1YIC0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Catenaria
anguillulae RepID=A1YIC0_9FUNG
Length = 1020
Score = 107 bits (267), Expect = 7e-22
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ ++GVP IA +L V R N L + E E
Sbjct: 276 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIASNLTYPEMVTRHNVNRLQEAVERGPEEH 335
Query: 196 GHFKVCRKG-------RPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + LQ G ++ R L D D ++ NR PS+H+ SM+
Sbjct: 336 PGAKYVIRPDGTRVDLRVTGVTGAPSLQPGWIVERHLMDDDVIIFNRQPSLHKMSMMGHR 395
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQSV AR E+ +L + Q+++ QS +
Sbjct: 396 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSVEARAEIQQLCMVPLQIVSPQSNK 454
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 455 PVMGIVQDTL 464
[99][TOP]
>UniRef100_B3T7L4 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
HF4000_APKG3E18 RepID=B3T7L4_9ARCH
Length = 1273
Score = 107 bits (267), Expect = 7e-22
Identities = 75/201 (37%), Positives = 108/201 (53%), Gaps = 14/201 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKG- 198
GKR D S RTV+ DP+L L E+GVP QIA L + V N + L +L+ G
Sbjct: 323 GKRVDFSSRTVISPDPNLDLGEVGVPVQIATKLTIPEIVTEWNIEKL-----KKLVVNGP 377
Query: 199 ------HFKVCRKGRPVVLYKKKD-------LQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
++ V G + L +D L+IG L+ R L+DGD VL NR PS+HQ S
Sbjct: 378 NTFPGVNYIVRPDGVKIRLDFVEDPSIIADSLEIGYLVERHLSDGDIVLFNRQPSLHQMS 437
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
+++ VRVLP ++P C P DFDGD ++ ++PQS AR E L+ + QLI+
Sbjct: 438 IMAHHVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQEQLIS 496
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
+ G ++ +D +T Y+L
Sbjct: 497 PRFGGPIIGGLRDFITGVYLL 517
[100][TOP]
>UniRef100_Q5JJW0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5JJW0_ORYSJ
Length = 1568
Score = 107 bits (266), Expect = 9e-22
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 10/187 (5%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
MK + + K + S R V+ GDP + L+ +GVP ++A+ + V V N L D
Sbjct: 301 MKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSVEEKVTDHNIAQLQD----- 355
Query: 184 LLEKGHFKVCRKGRPVV--LYKKKD--------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
++ KG + L KD L++G+++ R + DGD V +NRPPS +
Sbjct: 356 MMNKGLCLTYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFDGDIVFLNRPPSTDK 415
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
HS+ + V+V + INPL C PL DFDGDC+ + P+S++AR E EL +D+QL
Sbjct: 416 HSVEAFYVQVHN-DHTIKINPLICDPLGADFDGDCVQIFYPRSLSARAEAKELYTVDKQL 474
Query: 514 INGQSGR 534
++ +G+
Sbjct: 475 VSSHNGK 481
[101][TOP]
>UniRef100_B9EWM0 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9EWM0_ORYSJ
Length = 1528
Score = 107 bits (266), Expect = 9e-22
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 10/187 (5%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
MK + + K + S R V+ GDP + L+ +GVP ++A+ + V V N L D
Sbjct: 301 MKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSVEEKVTDHNIAQLQD----- 355
Query: 184 LLEKGHFKVCRKGRPVV--LYKKKD--------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
++ KG + L KD L++G+++ R + DGD V +NRPPS +
Sbjct: 356 MMNKGLCLTYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFDGDIVFLNRPPSTDK 415
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
HS+ + V+V + INPL C PL DFDGDC+ + P+S++AR E EL +D+QL
Sbjct: 416 HSVEAFYVQVHN-DHTIKINPLICDPLGADFDGDCVQIFYPRSLSARAEAKELYTVDKQL 474
Query: 514 INGQSGR 534
++ +G+
Sbjct: 475 VSSHNGK 481
[102][TOP]
>UniRef100_Q756K2 DNA-directed RNA polymerase n=1 Tax=Eremothecium gossypii
RepID=Q756K2_ASHGO
Length = 1459
Score = 107 bits (266), Expect = 9e-22
Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC--------- 174
GKR D S RTV+ DP+L++ E+ VP ++A+ L V R NK L
Sbjct: 369 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKHKLQQLIVNGANVHPG 428
Query: 175 ELRLLEKGHF--KVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
LL+K + R G + L K+LQIGD++ R L DGD VL NR PS+H+ S++S
Sbjct: 429 ANYLLKKNEEARRNLRYGDRIKL--AKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILS 486
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +S
Sbjct: 487 HYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKS 545
Query: 529 GRNLLSLSQDSLTAAYML 582
G +++ +QD +T +Y++
Sbjct: 546 GEPIIAATQDFITGSYLI 563
[103][TOP]
>UniRef100_C9SQ00 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Verticillium
albo-atrum VaMs.102 RepID=C9SQ00_9PEZI
Length = 1456
Score = 107 bits (266), Expect = 9e-22
Identities = 66/200 (33%), Positives = 112/200 (56%), Gaps = 13/200 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE-------- 177
GKR D S RTV+ DP+L ++++ +P +A++L VN + K L C +
Sbjct: 367 GKRVDFSGRTVISPDPNLGITQVAIPILVAKNLTYPERVNDYSLKKLRKCVQNGPDVWPG 426
Query: 178 ---LRLLEKGHFKVCRK--GRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSM 342
+ ++G +K+ K R V +DL++GD++ R + D D VL NR PS+H+ S+
Sbjct: 427 AQQVIKSDEGGYKISLKFGNRGQVA---RDLKVGDVVERHIEDNDIVLFNRQPSLHKLSI 483
Query: 343 ISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLING 522
+S V+V P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L
Sbjct: 484 MSHLVKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATP 542
Query: 523 QSGRNLLSLSQDSLTAAYML 582
++G +++ +QD +TAAY+L
Sbjct: 543 KNGEPIIAATQDFITAAYLL 562
[104][TOP]
>UniRef100_A1CLD8 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CLD8_ASPCL
Length = 1449
Score = 107 bits (266), Expect = 9e-22
Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE-KG 198
GKR D S RTV+ DP+L + E+ VP +A+++ V+R NK+ L + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVSRYNKEKLQQRVRNGTKKWPG 431
Query: 199 HFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ +KG L+ K LQ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYIIKKGSDFKLFLKYGNLNMIADQLQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHF 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 492 AKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 535 NLLSLSQDSLTAAYML 582
++S QD ++AAY+L
Sbjct: 551 PIISAIQDFISAAYVL 566
[105][TOP]
>UniRef100_B3T8B1 DNA-directed RNA polymerase n=1 Tax=uncultured marine crenarchaeote
HF4000_APKG5C13 RepID=B3T8B1_9ARCH
Length = 1268
Score = 107 bits (266), Expect = 9e-22
Identities = 75/201 (37%), Positives = 108/201 (53%), Gaps = 14/201 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKG- 198
GKR D S RTV+ DP+L L E+GVP IA L + V N + L +L+ G
Sbjct: 318 GKRVDFSSRTVISPDPNLDLGEVGVPMSIATKLTIPEIVTEWNIEKL-----KKLVINGP 372
Query: 199 ------HFKVCRKGRPVVLYKKKD-------LQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
++ V G + L +D L+IG L+ R L+DGD VL NR PS+HQ S
Sbjct: 373 NTFPGVNYIVRPDGVKIRLDFVEDTLQVADQLEIGYLVERHLSDGDVVLFNRQPSLHQMS 432
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
+++ VRVLP ++P C P DFDGD ++ ++PQS AR E L+ + QLI+
Sbjct: 433 IMAHHVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQEQLIS 491
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
+ G ++ +D +T AY+L
Sbjct: 492 PRFGGPIIGGLRDFITGAYLL 512
[106][TOP]
>UniRef100_Q0E3V3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Oryza sativa
Japonica Group RepID=Q0E3V3_ORYSJ
Length = 488
Score = 106 bits (265), Expect = 1e-21
Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
M+ + + K + S R+V+ GDP + + IG+P ++A+ + V N L +
Sbjct: 317 MRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQVTDINLNRLQE----- 371
Query: 184 LLEKGHFKVCRKGRPVVLYK-----KKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+++KG R G+ L++G + R + DGD V +NRPPS H+HS+ +
Sbjct: 372 IVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQA 431
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
V V V INPL C+P DFDGDC+H Y PQS+AA+ E EL ++++QL
Sbjct: 432 FRVYVHE-DHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQL 485
[107][TOP]
>UniRef100_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8C4M1_THAPS
Length = 1422
Score = 106 bits (265), Expect = 1e-21
Identities = 67/197 (34%), Positives = 113/197 (57%), Gaps = 10/197 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNREN----KKNLLDCCELR-- 183
GKR D S RTV+ DP+L + ++GVP +A+ + V+R N ++ +L+ ++
Sbjct: 380 GKRVDFSARTVISPDPNLRVDQVGVPVHVAKIMTYPETVSRYNIEKLRQRVLNGPDVHPG 439
Query: 184 --LLEKGHFKVCRKGRPVVLYKK--KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISL 351
L+ G K ++ + L+IGD++ R + DGD VL NR PS+H+ S++S
Sbjct: 440 ANLIRPGGENSFVKSLAYADRERAAQTLRIGDIVERHMEDGDVVLFNRQPSLHKLSIMSH 499
Query: 352 SVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSG 531
V+V+P + N C+P DFDGD ++ ++PQ+ AR+E N L+ + L ++G
Sbjct: 500 QVKVMPWRTF-RFNICVCAPYNADFDGDEMNMHLPQTEEARIEANMLMGVHHNLATPRNG 558
Query: 532 RNLLSLSQDSLTAAYML 582
L++ SQD L+AAY++
Sbjct: 559 EPLVACSQDFLSAAYLI 575
[108][TOP]
>UniRef100_Q2PYS8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rozella allomycis
RepID=Q2PYS8_9FUNG
Length = 809
Score = 106 bits (265), Expect = 1e-21
Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 4/187 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L+L ++GVP IA++L V N + L E
Sbjct: 74 LMGKRVDFSARTVITPDPNLSLDQVGVPRTIAKTLTYPEIVTPYNIEYLQKLVNNGPTEH 133
Query: 196 --GHFKVCRKGRPVVLYKKKD--LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVRV 363
+ V G + L K D LQ G L+ R + DGD VL NR PS+H+ SM+ ++V
Sbjct: 134 PGARYVVRDDGNRIDLRFKTDVVLQPGYLVERHINDGDVVLFNRQPSLHKMSMMGHRIKV 193
Query: 364 LPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLL 543
+P S+ +N +P DFDGD ++ +IPQSV A+ EL EL + Q+++ QS + +
Sbjct: 194 MPYSTF-RLNLSVTTPYNADFDGDEMNLHIPQSVEAKAELVELALVPTQIVSPQSNKPCM 252
Query: 544 SLSQDSL 564
+ QD+L
Sbjct: 253 GIVQDTL 259
[109][TOP]
>UniRef100_C6HPI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus H143
RepID=C6HPI8_AJECH
Length = 1333
Score = 106 bits (265), Expect = 1e-21
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC---------- 171
GKR D S RTV+ DP+L ++E+ VP +A ++ V R NK+ L
Sbjct: 339 GKRVDFSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 398
Query: 172 CELRLLEKGHFKVCRK-GRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L + +FK+ K G P ++ +L+ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 399 ANYVLKKSQNFKMNLKFGNPNLV--ANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILS 456
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++
Sbjct: 457 HFAKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKN 515
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++S QD +TAAY+L
Sbjct: 516 GEPIISAIQDFITAAYLL 533
[110][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JY44_UNCRE
Length = 1747
Score = 106 bits (265), Expect = 1e-21
Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 13/206 (6%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L +
Sbjct: 305 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKL-----GQ 359
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD------LQIGDLLYRPLTDGDKVLINRPPS 324
L++ G + + G + L K LQ G + R L DGD +L NR PS
Sbjct: 360 LVDNGPDIHPGARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDVILFNRQPS 419
Query: 325 IHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALD 504
+H+ SM++ VRV+P S+ +N +P DFDGD ++ ++PQS AR EL++L +
Sbjct: 420 LHKESMMAHRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCLVP 478
Query: 505 RQLINGQSGRNLLSLSQDSLTAAYML 582
+++ Q L+ + QD+L Y +
Sbjct: 479 LNIVSPQRNGPLMGIVQDTLCGIYKI 504
[111][TOP]
>UniRef100_C0NZL8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
RepID=C0NZL8_AJECG
Length = 1456
Score = 106 bits (265), Expect = 1e-21
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC---------- 171
GKR D S RTV+ DP+L ++E+ VP +A ++ V R NK+ L
Sbjct: 372 GKRVDFSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431
Query: 172 CELRLLEKGHFKVCRK-GRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L + +FK+ K G P ++ +L+ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYVLKKSQNFKMNLKFGNPNLV--ANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILS 489
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++
Sbjct: 490 HFAKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKN 548
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++S QD +TAAY+L
Sbjct: 549 GEPIISAIQDFITAAYLL 566
[112][TOP]
>UniRef100_A6RGX8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6RGX8_AJECN
Length = 1439
Score = 106 bits (265), Expect = 1e-21
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC---------- 171
GKR D S RTV+ DP+L ++E+ VP +A ++ V R NK+ L
Sbjct: 372 GKRVDFSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431
Query: 172 CELRLLEKGHFKVCRK-GRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L + +FK+ K G P ++ +L+ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYVLKKSQNFKMNLKFGNPNLV--ANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILS 489
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++
Sbjct: 490 HFAKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKHNLATPKN 548
Query: 529 GRNLLSLSQDSLTAAYML 582
G ++S QD +TAAY+L
Sbjct: 549 GEPIISAIQDFITAAYLL 566
[113][TOP]
>UniRef100_A1YIC5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces
hyalinus RepID=A1YIC5_9FUNG
Length = 960
Score = 106 bits (265), Expect = 1e-21
Identities = 66/187 (35%), Positives = 103/187 (55%), Gaps = 4/187 (2%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP +++ E+GVP +A++L V N +
Sbjct: 234 LMGKRVDFSARTVITGDPHISIEEVGVPLSVAKTLTFPERVTSYNLDRMQALVNNAKNYP 293
Query: 196 G-HFKVCRKGRPVVLYKKKD---LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVRV 363
G + + +GR + L K ++IGD++ R + GD VL NR PS+H+ SM++ VRV
Sbjct: 294 GARYVINERGRRIDLEVAKTTPLIEIGDIVERHMVTGDTVLFNRQPSLHKMSMMAHIVRV 353
Query: 364 LPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLL 543
+P SS +N C+P DFDGD ++ ++PQS EL L + L++ QS + +
Sbjct: 354 MPYSS-FRLNVNVCAPYNADFDGDEMNLHMPQSYETVAELQTLSMVSSLLVSPQSNKPVN 412
Query: 544 SLSQDSL 564
L QD+L
Sbjct: 413 GLVQDAL 419
[114][TOP]
>UniRef100_A1YIC1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Blastocladiella
emersonii RepID=A1YIC1_BLAEM
Length = 1005
Score = 106 bits (265), Expect = 1e-21
Identities = 66/190 (34%), Positives = 107/190 (56%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ ++GVP IA +L V R N + L + E
Sbjct: 261 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIALNLTYPEMVTRHNIRRLQEMVHRGAEEH 320
Query: 196 --GHFKVCRKGRPVVLYKK-----KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G V L +LQ G ++ R L+D D ++ NR PS+H+ SM+
Sbjct: 321 PGAKYVIRPDGSRVDLRVSGAQGAPNLQPGWVVERHLSDNDVIIFNRQPSLHKMSMMGHK 380
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQSV AR E+ +L + Q+++ QS +
Sbjct: 381 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSVEARAEIQQLCMVPLQIVSPQSNK 439
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 440 PVMGIVQDTL 449
[115][TOP]
>UniRef100_A4RTE2 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus
CCE9901 RepID=A4RTE2_OSTLU
Length = 1395
Score = 106 bits (264), Expect = 2e-21
Identities = 64/195 (32%), Positives = 106/195 (54%), Gaps = 8/195 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK-- 195
GKR D S RTV+ DP+L + E+GVP IA+++ VN+ N L + + +
Sbjct: 372 GKRVDFSARTVISPDPNLRIDEVGVPIHIAKTMTYPEVVNKHNMVMLRERVRNGMAKHPG 431
Query: 196 -GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSV 357
K G + Y + +L+ GD++ R L DGD +L NR PS+H+ S+++
Sbjct: 432 ANFVKFASGGMQYLKYGDRRKIASELKFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKA 491
Query: 358 RVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRN 537
R++ ++ N C+P DFDGD ++ + PQ+ AR E +L+ + L ++G
Sbjct: 492 RIMECRTL-RFNECVCTPYNADFDGDEMNIHCPQTEEARAEAMQLMGVQHNLCTPKNGEI 550
Query: 538 LLSLSQDSLTAAYML 582
L++ +QD LTAA++L
Sbjct: 551 LIAATQDFLTAAFLL 565
[116][TOP]
>UniRef100_Q2PYT1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coelomomyces
stegomyiae RepID=Q2PYT1_9FUNG
Length = 542
Score = 106 bits (264), Expect = 2e-21
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 14/197 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ E+GVP IA +L + V R N +L LL+
Sbjct: 76 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTLPEIVTRYNIGHL-----QALLKN 130
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G G V+ D LQ G ++ R + DGD ++ NR PS+H+
Sbjct: 131 G--PSTHPGAKYVIKSNGDRIDLRYTGNKGDLNLQYGWIVERHINDGDIIIFNRQPSLHK 188
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ V+V+P S+ +N SP DFDGD ++ ++PQSV A+ E+ +L + Q+
Sbjct: 189 MSMMGHKVKVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQSVEAKAEIQQLCMVPLQI 247
Query: 514 INGQSGRNLLSLSQDSL 564
++ Q + ++ + QD+L
Sbjct: 248 VSPQGNKPVMGIVQDTL 264
[117][TOP]
>UniRef100_Q2PYR2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Umbelopsis
ramanniana RepID=Q2PYR2_UMBRA
Length = 571
Score = 106 bits (264), Expect = 2e-21
Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ E+GVP IA +L V N L E
Sbjct: 105 LMGKRVDFSARTVITGDPNLSVDEVGVPRSIARTLTYPEIVTPYNMDKLQTLVRNGPTEH 164
Query: 196 --GHFKVCRKGRPVVL-YKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ LQ G + R + DGD V+ NR PS+H+ SM+
Sbjct: 165 PGAKYVIRDTGERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNRQPSLHKMSMMGHR 224
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+RV+P S+ +N SP DFDGD ++ ++PQS+ R E+ E+ + +Q+++ QS +
Sbjct: 225 IRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICMVPKQIVSPQSNK 283
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 284 PVMGIVQDTL 293
[118][TOP]
>UniRef100_C5DY31 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS
732 RepID=C5DY31_ZYGRC
Length = 1458
Score = 106 bits (264), Expect = 2e-21
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC--------- 174
GKR D S RTV+ DP+L++ E+ VP ++A+ L V R NK L
Sbjct: 368 GKRVDFSGRTVISPDPNLSVDEVAVPDRVAKVLTYPERVTRYNKGKLQQLVVNGPNEYPG 427
Query: 175 --ELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L ++ + R G V L K+L+IGDL+ R L DGD VL NR PS+H+ S++S
Sbjct: 428 ANYLLKKDEDARRNLRFGDRVKL--AKNLRIGDLVERHLEDGDVVLFNRQPSLHRLSILS 485
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
++ P + +N C+P DFDGD ++ ++PQS AR E L+ + L+ +S
Sbjct: 486 HYAKIRPWRT-FRLNECVCTPYNADFDGDEMNLHVPQSEEARAEAINLMGVKSNLLTPKS 544
Query: 529 GRNLLSLSQDSLTAAYML 582
G +++ +QD +T +Y++
Sbjct: 545 GEPIIAATQDFITGSYLI 562
[119][TOP]
>UniRef100_B2ADZ3 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
RepID=B2ADZ3_PODAN
Length = 1521
Score = 106 bits (264), Expect = 2e-21
Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 15/202 (7%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE-------- 177
GKR D S RTV+ DP+L++ ++ VP ++A++L V+ N + L C
Sbjct: 374 GKRVDFSGRTVISPDPNLSIEQVAVPERVAKNLTYPERVHANNIQKLKACVRNGPTEYPG 433
Query: 178 -LRLL----EKGHFKVCRKG-RPVVLYKKKD-LQIGDLLYRPLTDGDKVLINRPPSIHQH 336
L++ E+ K K +P +L K D L+IGD++ R L D D VL NR PS+H+
Sbjct: 434 ALQITKNQGEENEMKFLLKHMKPHILEKNADNLRIGDVVERHLEDNDIVLFNRQPSLHKL 493
Query: 337 SMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLI 516
S++S ++ P + +N CSP DFDGD ++ ++PQ+ AR E L+ + L
Sbjct: 494 SIMSHYAKIRPWRTF-RLNECVCSPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLC 552
Query: 517 NGQSGRNLLSLSQDSLTAAYML 582
++G +++ +QD +TAAY+L
Sbjct: 553 TPKNGEPIIAATQDFITAAYLL 574
[120][TOP]
>UniRef100_A1YIC2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coelomomyces
stegomyiae RepID=A1YIC2_9FUNG
Length = 1014
Score = 106 bits (264), Expect = 2e-21
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 14/197 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ E+GVP IA +L + V R N +L LL+
Sbjct: 270 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTLPEIVTRYNIGHL-----QALLKN 324
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G G V+ D LQ G ++ R + DGD ++ NR PS+H+
Sbjct: 325 G--PSTHPGAKYVIKSNGDRIDLRYTGNKGDLNLQYGWIVERHINDGDIIIFNRQPSLHK 382
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ V+V+P S+ +N SP DFDGD ++ ++PQSV A+ E+ +L + Q+
Sbjct: 383 MSMMGHKVKVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQSVEAKAEIQQLCMVPLQI 441
Query: 514 INGQSGRNLLSLSQDSL 564
++ Q + ++ + QD+L
Sbjct: 442 VSPQGNKPVMGIVQDTL 458
[121][TOP]
>UniRef100_A1YIA9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Neolecta vitellina
RepID=A1YIA9_9ASCO
Length = 997
Score = 106 bits (264), Expect = 2e-21
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L + E
Sbjct: 260 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTSYNIHKLQELVRNGPNEH 319
Query: 196 GHFKVCRKG---RPVVLYKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 320 PGAKYIIRDTGERIDLRYHKRAGEIPLQYGWRVERHIVDGDVIIFNRQPSLHKMSMMGHR 379
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+RV+P S+ +N SP DFDGD ++ ++PQS R E++E+ + RQ+++ Q +
Sbjct: 380 IRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISEICMVPRQIVSPQGNK 438
Query: 535 NLLSLSQDSLTA 570
++ + QD+L A
Sbjct: 439 PVMGIVQDTLCA 450
[122][TOP]
>UniRef100_Q5S1Y0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Boletellus
projectellus RepID=Q5S1Y0_9HOMO
Length = 997
Score = 105 bits (263), Expect = 2e-21
Identities = 72/192 (37%), Positives = 107/192 (55%), Gaps = 9/192 (4%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL----- 180
++GKR D S RTV+ GDP+L L E+GVP IA +L Y R N+ EL
Sbjct: 256 LMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNL---TYPERVTPYNIAYLQELVRNGP 312
Query: 181 RLLEKGHFKVCRKGRPVVL-YKKKD---LQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+ V G + L Y K+ LQ G ++ R L DGD VL NR PS+H+ SM+S
Sbjct: 313 STYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMS 372
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+++P S+ +N P DFDGD ++ +IPQS R EL+++ + RQ+I+ Q+
Sbjct: 373 HRVKLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQA 431
Query: 529 GRNLLSLSQDSL 564
+ ++ + QD+L
Sbjct: 432 NKPVMGIVQDTL 443
[123][TOP]
>UniRef100_B0XZZ0 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
RepID=B0XZZ0_ASPFC
Length = 1453
Score = 105 bits (263), Expect = 2e-21
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE-KG 198
GKR D S RTV+ DP+L + E+ VP +A+++ V R NK+ L + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Query: 199 HFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ +KG L+ K +Q GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYIIKKGSDFKLFLKYGNLNMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHF 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 492 AKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 535 NLLSLSQDSLTAAYML 582
++S QD ++AAY+L
Sbjct: 551 PIISAIQDFISAAYIL 566
[124][TOP]
>UniRef100_A1D5Y9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D5Y9_NEOFI
Length = 1453
Score = 105 bits (263), Expect = 2e-21
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE-KG 198
GKR D S RTV+ DP+L + E+ VP +A+++ V R NK+ L + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Query: 199 HFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ +KG L+ K +Q GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYIIKKGSDFKLFLKYGNLNMIADQIQEGDVIERHIEDGDIVLFNRQPSLHKLSILSHF 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 492 AKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 535 NLLSLSQDSLTAAYML 582
++S QD ++AAY+L
Sbjct: 551 PIISAIQDFISAAYIL 566
[125][TOP]
>UniRef100_Q4DZA9 DNA-directed RNA polymerase n=1 Tax=Trypanosoma cruzi
RepID=Q4DZA9_TRYCR
Length = 1553
Score = 105 bits (262), Expect = 3e-21
Identities = 72/204 (35%), Positives = 112/204 (54%), Gaps = 17/204 (8%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL--RLLEK 195
GKR D S R+V+ DP+L + E+ VP ++A +V Y R K NL EL RL+
Sbjct: 361 GKRVDFSGRSVISPDPNLDVDELAVPLRVA---RVLTYPQRVFKSNL----ELMRRLVRN 413
Query: 196 GH--------FKVCRKGRPVVLYKKKD-------LQIGDLLYRPLTDGDKVLINRPPSIH 330
G + ++G L ++D L IGD++ R + +GD VL NR PS+H
Sbjct: 414 GPNVHPGAVAVYLAQEGSKKSLNHERDRESLSARLSIGDVVERHVMNGDVVLFNRQPSLH 473
Query: 331 QHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQ 510
+ SM++ RVLP + N CC+P DFDGD ++ ++ Q+ AR E EL+ +
Sbjct: 474 RISMMAHRARVLPFRTF-RFNECCCAPYNADFDGDEMNVHLVQTEEARAEAFELMLTAKN 532
Query: 511 LINGQSGRNLLSLSQDSLTAAYML 582
+IN ++G +++ +QD L AAY++
Sbjct: 533 IINAKNGEPIIACTQDFLVAAYLV 556
[126][TOP]
>UniRef100_A8PJK8 DNA-directed RNA polymerase n=1 Tax=Brugia malayi
RepID=A8PJK8_BRUMA
Length = 1404
Score = 105 bits (262), Expect = 3e-21
Identities = 65/198 (32%), Positives = 111/198 (56%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNREN----KKNLLDCCELR-- 183
GKR D S RTV+ DP+L + ++GVP +A+ L VN+ N +K +L+ ++
Sbjct: 355 GKRVDFSGRTVISPDPNLRIDQVGVPVYVAKILTFPEIVNKANIERMRKLILNGDDIHPG 414
Query: 184 ---LLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
++E+ G+ + + G + + L++GD++ R L D D VL NR PS+H+ S++S
Sbjct: 415 ANHIVERATGNKRFLKYGNREITAAQ--LKVGDIIERHLDDNDVVLFNRQPSLHKISIMS 472
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
+++P N C+P DFDGD ++ ++PQ+ AR E + L+ + LI +S
Sbjct: 473 HRAKIVP-GRTFRFNECACTPYNADFDGDEMNLHVPQTYEARAEASLLMGVKSNLITPRS 531
Query: 529 GRNLLSLSQDSLTAAYML 582
G L++ QD +T Y+L
Sbjct: 532 GEPLIAAIQDFITGTYLL 549
[127][TOP]
>UniRef100_Q0PPZ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Agonimia sp. AFTOL
684 RepID=Q0PPZ9_9EURO
Length = 1023
Score = 105 bits (262), Expect = 3e-21
Identities = 69/205 (33%), Positives = 109/205 (53%), Gaps = 12/205 (5%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA +L V + N L R
Sbjct: 270 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIARTLTYPETVTQYNINKL-----AR 324
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSI 327
L+ G + + +G + L K+ LQ G + R + DGD +L NR PS+
Sbjct: 325 LVASGPEQHPGARYIIRPQGERIDLRFHKNTSQIILQNGWKVERHIMDGDVILFNRQPSL 384
Query: 328 HQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDR 507
H+ SM+ VRV+P S+ +N +P DFDGD ++ ++PQS R EL++L +
Sbjct: 385 HKESMMGHRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEETRAELSQLCMVPL 443
Query: 508 QLINGQSGRNLLSLSQDSLTAAYML 582
+++ Q L+ + QD+L Y +
Sbjct: 444 NIVSPQRNGPLMGIVQDTLCGIYKI 468
[128][TOP]
>UniRef100_C8VQG7 DNA-directed RNA polymerase (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] n=2 Tax=Emericella
nidulans RepID=C8VQG7_EMENI
Length = 1745
Score = 105 bits (262), Expect = 3e-21
Identities = 70/200 (35%), Positives = 104/200 (52%), Gaps = 7/200 (3%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L
Sbjct: 350 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNG 409
Query: 184 LLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLY-----RPLTDGDKVLINRPPSIHQHSM 342
E + V G + L K LLY R L DGD +L NR PS+H+ SM
Sbjct: 410 PNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKESM 469
Query: 343 ISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLING 522
+ VRV+P S+ +N SP DFDGD ++ ++PQS +R EL +L + + +++
Sbjct: 470 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEESRAELQQLALVPQNIVSP 528
Query: 523 QSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y +
Sbjct: 529 QRNGPLMGIVQDTLCGIYKI 548
[129][TOP]
>UniRef100_C4JWU1 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JWU1_UNCRE
Length = 1435
Score = 105 bits (262), Expect = 3e-21
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK-- 195
GKR D S RTV+ DP+L + E+ VP +A ++ V R NK+ L + +R K
Sbjct: 372 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRE--RIRNGTKVW 429
Query: 196 -GHFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
G + ++G ++ K L+ GD++ R L DGD VL NR PS+H+ S++S
Sbjct: 430 PGANYLSKRGTTFKVFLKYGNLRLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILS 489
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++
Sbjct: 490 HFVKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKN 548
Query: 529 GRNLLSLSQDSLTAAYML 582
G +++ QD +TAAY+L
Sbjct: 549 GEPIIAAIQDFITAAYLL 566
[130][TOP]
>UniRef100_A5H293 DNA-directed RNA polymerase (Fragment) n=1 Tax=Degelia plumbea
RepID=A5H293_9LECA
Length = 1002
Score = 105 bits (262), Expect = 3e-21
Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 335 PGAKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQPSLHKESMMGHR 394
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 395 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNG 453
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y L
Sbjct: 454 PLMGIVQDTLCGIYKL 469
[131][TOP]
>UniRef100_A1YIB6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=A1YIB6_9FUNG
Length = 1018
Score = 105 bits (262), Expect = 3e-21
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ E+GVP IA +L V N + + + E
Sbjct: 273 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRNGPNEH 332
Query: 196 --GHFKVCRKGRPVVL-YKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ LQ G + R L DGD V+ NR PS+H+ SM+
Sbjct: 333 PGAKYVIRDTGERIDLRYHKRAGDIPLQYGYKVERHLNDGDVVIFNRQPSLHKMSMMGHK 392
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS E+ E+ + +Q+I+ QS +
Sbjct: 393 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETNAEIKEICMVPKQIISPQSNK 451
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 452 PVMGIVQDTL 461
[132][TOP]
>UniRef100_Q5QHU1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Amanita phalloides
RepID=Q5QHU1_AMAPH
Length = 1007
Score = 105 bits (261), Expect = 3e-21
Identities = 72/192 (37%), Positives = 107/192 (55%), Gaps = 9/192 (4%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL----- 180
++GKR D S RTV+ GDP+L L E+GVP IA +L Y R N+ EL
Sbjct: 269 LMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNL---TYPERVTPYNIGYLQELVRNGP 325
Query: 181 RLLEKGHFKVCRKGRPVVL-YKKK---DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+ V G + L Y K+ LQ G ++ R L DGD VL NR PS+H+ SM+S
Sbjct: 326 TAYPGARYVVRDTGERIDLRYNKRADAHLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMS 385
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+++P S+ +N P DFDGD ++ +IPQS R EL+++ + RQ+I+ Q+
Sbjct: 386 HRVKLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQA 444
Query: 529 GRNLLSLSQDSL 564
+ ++ + QD+L
Sbjct: 445 NKPVMGIVQDTL 456
[133][TOP]
>UniRef100_Q5KFV9 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KFV9_CRYNE
Length = 1466
Score = 105 bits (261), Expect = 3e-21
Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 16/203 (7%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNREN----KKNLLDCCELR-- 183
GKR D S RTV+ DP+L + E+ VP ++A L V N ++ +++ +L
Sbjct: 362 GKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPG 421
Query: 184 --LLEKGHFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQ 333
+LE+ H + + K ++LQIGD+++R + DGD VL NR PS+H+
Sbjct: 422 ANVLERKHENGSTVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHK 481
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
S++ VRV P + +N C+P DFDGD ++ ++PQ+ AR E EL+++ + L
Sbjct: 482 LSIMCHRVRVRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNL 540
Query: 514 INGQSGRNLLSLSQDSLTAAYML 582
+ ++G +++ QD +TAAY+L
Sbjct: 541 VTPRNGEPIIAAIQDFITAAYLL 563
[134][TOP]
>UniRef100_Q55QA7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q55QA7_CRYNE
Length = 1466
Score = 105 bits (261), Expect = 3e-21
Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 16/203 (7%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNREN----KKNLLDCCELR-- 183
GKR D S RTV+ DP+L + E+ VP ++A L V N ++ +++ +L
Sbjct: 362 GKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQFMRQAIINGSKLHPG 421
Query: 184 --LLEKGHFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQ 333
+LE+ H + + K ++LQIGD+++R + DGD VL NR PS+H+
Sbjct: 422 ANVLERKHENGSTVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHK 481
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
S++ VRV P + +N C+P DFDGD ++ ++PQ+ AR E EL+++ + L
Sbjct: 482 LSIMCHRVRVRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNL 540
Query: 514 INGQSGRNLLSLSQDSLTAAYML 582
+ ++G +++ QD +TAAY+L
Sbjct: 541 VTPRNGEPIIAAIQDFITAAYLL 563
[135][TOP]
>UniRef100_Q1DVM7 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1DVM7_COCIM
Length = 1430
Score = 105 bits (261), Expect = 3e-21
Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRL-LEKG 198
GKR D S RTV+ DP+L + E+ VP +A ++ V R NK+ L + + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431
Query: 199 HFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ ++G ++ K L+ GD++ R L DGD VL NR PS+H+ S++S
Sbjct: 432 ANYLSKRGTTFKVFLKYGNLNLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHF 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 492 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 535 NLLSLSQDSLTAAYML 582
+++ QD +TAAY+L
Sbjct: 551 PIIAAIQDFITAAYLL 566
[136][TOP]
>UniRef100_C5PCH6 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735
delta SOWgp RepID=C5PCH6_COCP7
Length = 1444
Score = 105 bits (261), Expect = 3e-21
Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRL-LEKG 198
GKR D S RTV+ DP+L + E+ VP +A ++ V R NK+ L + + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431
Query: 199 HFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ ++G ++ K L+ GD++ R L DGD VL NR PS+H+ S++S
Sbjct: 432 ANYLSKRGTTFKVFLKYGNLNLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHF 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 492 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 535 NLLSLSQDSLTAAYML 582
+++ QD +TAAY+L
Sbjct: 551 PIIAAIQDFITAAYLL 566
[137][TOP]
>UniRef100_A7J586 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lobariella pallida
RepID=A7J586_9LECA
Length = 996
Score = 105 bits (261), Expect = 3e-21
Identities = 69/201 (34%), Positives = 106/201 (52%), Gaps = 12/201 (5%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L +L++
Sbjct: 255 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLH-----QLVKN 309
Query: 196 G-------HFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G + + G + L K LQ G + R + DGD ++ NR PS+H+ S
Sbjct: 310 GPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKES 369
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 370 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 428
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y L
Sbjct: 429 PQRNGPLMGIVQDTLCGIYKL 449
[138][TOP]
>UniRef100_Q976A5 DNA-directed RNA polymerase n=1 Tax=Sulfolobus tokodaii
RepID=Q976A5_SULTO
Length = 884
Score = 105 bits (261), Expect = 3e-21
Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 10/197 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK-- 195
GKR D S RTV+ DP++++ E+GVP IA++L V V + N + + + EK
Sbjct: 319 GKRVDFSARTVISPDPNISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYV-INGPEKWP 377
Query: 196 -GHFKVCRKGRPVVLYKKKD-------LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISL 351
++ + GR + L KD L G ++ R L DGD VL NR PS+H+ SM+
Sbjct: 378 GANYVIRPDGRRIDLRYVKDRKELASSLTPGYIVERHLIDGDIVLFNRQPSLHRISMMGH 437
Query: 352 SVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSG 531
V+VLP +N L C P DFDGD ++ ++PQS A E E++ + R +I + G
Sbjct: 438 KVKVLP-GRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHRNIITPRYG 496
Query: 532 RNLLSLSQDSLTAAYML 582
++ +QD ++ AY+L
Sbjct: 497 GPIMGGAQDYISGAYLL 513
[139][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 104 bits (260), Expect = 4e-21
Identities = 69/197 (35%), Positives = 110/197 (55%), Gaps = 12/197 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L + E+GVP IA+++ V N ++L+ L+ +
Sbjct: 347 LMGKRVDFSARTVITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDHMLE-----LVRR 401
Query: 196 GH-------FKVCRKGRPVVLY---KKKDL--QIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G+ + + G + L K DL Q G + R + DGD V+ NR P++H+ S
Sbjct: 402 GNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLHKMS 461
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRVLP S+ +N C SP DFDGD ++ ++PQS+ R E+ + RQ+I
Sbjct: 462 MMGHRVRVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIIT 520
Query: 520 GQSGRNLLSLSQDSLTA 570
Q+ + ++ + QD+LTA
Sbjct: 521 PQANKPVMGIVQDTLTA 537
[140][TOP]
>UniRef100_C1MN08 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MN08_9CHLO
Length = 1591
Score = 104 bits (260), Expect = 4e-21
Identities = 62/195 (31%), Positives = 107/195 (54%), Gaps = 8/195 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGH 201
GKR D S RTV+ DP+L + E+GVP IA+ + +++ N +++ + + +
Sbjct: 374 GKRVDFSGRTVISPDPNLRIDEVGVPMHIAKLMTYPEVISKHNIEHIRERVRNGMNKHPG 433
Query: 202 FKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSV 357
R Y K +L+ GD++ R L DGD +L NR PS+H+ S+++
Sbjct: 434 ANFVRFKSGGTQYLKYGDRRRVASELKFGDVVERHLNDGDVLLFNRQPSLHKMSIMAHRA 493
Query: 358 RVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRN 537
+++P ++ N C+P DFDGD ++ + PQ+ AR E EL+ + + L ++G
Sbjct: 494 KIMPWRTL-RFNECVCAPYNADFDGDEMNIHCPQTEEARAEAIELMGVHKNLCTPKNGEI 552
Query: 538 LLSLSQDSLTAAYML 582
L++ +QD LTA+Y+L
Sbjct: 553 LIAATQDFLTASYLL 567
[141][TOP]
>UniRef100_Q9NJJ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scolopendra
polymorpha RepID=Q9NJJ7_SCOPO
Length = 734
Score = 104 bits (260), Expect = 4e-21
Identities = 69/197 (35%), Positives = 110/197 (55%), Gaps = 12/197 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L + ++GVP IA++L V N + + L+++
Sbjct: 5 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQE-----LVQR 59
Query: 196 GH-------FKVCRKGRPVVLY---KKKDL--QIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G+ + + G + L K DL Q G + R + DGD V+ NR P++H+ S
Sbjct: 60 GNNQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQPTLHKMS 119
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ +RVLP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + RQ+I
Sbjct: 120 MMGHHIRVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIIT 178
Query: 520 GQSGRNLLSLSQDSLTA 570
QS R ++ + QD+LTA
Sbjct: 179 PQSNRPVMGIVQDTLTA 195
[142][TOP]
>UniRef100_Q8MX26 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cercomonas sp. ATCC
50319 RepID=Q8MX26_9EUKA
Length = 1014
Score = 104 bits (260), Expect = 4e-21
Identities = 64/196 (32%), Positives = 109/196 (55%), Gaps = 13/196 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ ++GVP IA +L V R N ++R L
Sbjct: 270 LMGKRVDFSARTVITGDPNLSVDQVGVPRSIAMTLTFPEMVTRFN------IAQMRRLVA 323
Query: 196 GHFKVCRKGRPVV-----------LYKKKD--LQIGDLLYRPLTDGDKVLINRPPSIHQH 336
V R ++ + K D L++G + R + DGD +L NR PS+H+
Sbjct: 324 NGPNVHPGARTIIRDDGKRIDLRFVKKSSDQHLEVGYRIERHIHDGDVILFNRQPSLHKM 383
Query: 337 SMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLI 516
S+++ +RV+P S+ +N C +P DFDGD ++ ++PQS+ R E E++ RQ++
Sbjct: 384 SIMAHKIRVMPWSTF-RLNLSCTTPYNADFDGDEMNLHVPQSMMTRAEALEIMLCPRQIV 442
Query: 517 NGQSGRNLLSLSQDSL 564
+ Q+ + ++ + QD+L
Sbjct: 443 SPQANKPVIGIVQDTL 458
[143][TOP]
>UniRef100_Q0PPZ3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acarospora laqueata
RepID=Q0PPZ3_9LECA
Length = 1016
Score = 104 bits (260), Expect = 4e-21
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N L + E
Sbjct: 277 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 336
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD +++NR PS+H+ SM+
Sbjct: 337 PGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIILNRQPSLHKESMMGHR 396
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 397 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNG 455
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 456 PLMGIVQDTLCGVYKM 471
[144][TOP]
>UniRef100_C7GMM0 Rpo31p n=1 Tax=Saccharomyces cerevisiae JAY291 RepID=C7GMM0_YEAS2
Length = 1460
Score = 104 bits (260), Expect = 4e-21
Identities = 66/198 (33%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC--------- 174
GKR D S RTV+ DP+L++ E+ VP ++A+ L V R N+ L +
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Query: 175 --ELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L + + R G + L K+LQIGD++ R L DGD VL NR PS+H+ S++S
Sbjct: 430 ANYLLKRNEDARRNLRYGDRMKL--AKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILS 487
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +S
Sbjct: 488 HYAKIRPWRT-FRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKS 546
Query: 529 GRNLLSLSQDSLTAAYML 582
G +++ +QD +T +Y++
Sbjct: 547 GEPIIAATQDFITGSYLI 564
[145][TOP]
>UniRef100_B9WF61 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WF61_CANDC
Length = 1448
Score = 104 bits (260), Expect = 4e-21
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 12/199 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE-------- 177
GKR D S RTV+ DP+L + E+ VP ++A+ L R NKK L
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLIVNGPDIHPG 425
Query: 178 ----LRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMI 345
++ E G + R G V L K LQIGD++ R + DGD VL NR PS+H+ S++
Sbjct: 426 ANYVMKQNEPGKRNL-RFGDRVKL--AKTLQIGDIVERHIEDGDVVLFNRQPSLHRLSIL 482
Query: 346 SLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQ 525
S ++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +
Sbjct: 483 SHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPK 541
Query: 526 SGRNLLSLSQDSLTAAYML 582
SG +++ +QD +T +Y++
Sbjct: 542 SGEPIIAATQDFITGSYLI 560
[146][TOP]
>UniRef100_B3LJF9 DNA-directed RNA polymerase n=3 Tax=Saccharomyces cerevisiae
RepID=B3LJF9_YEAS1
Length = 1460
Score = 104 bits (260), Expect = 4e-21
Identities = 66/198 (33%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC--------- 174
GKR D S RTV+ DP+L++ E+ VP ++A+ L V R N+ L +
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Query: 175 --ELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L + + R G + L K+LQIGD++ R L DGD VL NR PS+H+ S++S
Sbjct: 430 ANYLLKRNEDARRNLRYGDRMKL--AKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILS 487
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +S
Sbjct: 488 HYAKIRPWRT-FRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKS 546
Query: 529 GRNLLSLSQDSLTAAYML 582
G +++ +QD +T +Y++
Sbjct: 547 GEPIIAATQDFITGSYLI 564
[147][TOP]
>UniRef100_A5H295 DNA-directed RNA polymerase (Fragment) n=1 Tax=Protopannaria
pezizoides RepID=A5H295_9LECA
Length = 1016
Score = 104 bits (260), Expect = 4e-21
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 335 PGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHR 394
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 395 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNG 453
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 454 PLMGIVQDTLCGIYKM 469
[148][TOP]
>UniRef100_A5H276 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cetraria islandica
RepID=A5H276_9LECA
Length = 1003
Score = 104 bits (260), Expect = 4e-21
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L + E
Sbjct: 276 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEXVTPYNIQKLHQLVKNGPNEH 335
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 336 PGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHR 395
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 396 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNG 454
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 455 PLMGIVQDTLCGIYKM 470
[149][TOP]
>UniRef100_A1YIB3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Capniomyces
stellatus RepID=A1YIB3_9FUNG
Length = 1024
Score = 104 bits (260), Expect = 4e-21
Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 7/195 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP++ + ++GVP IA++L V N L + + E
Sbjct: 279 LMGKRVDFSARTVIAGDPNIEIDQVGVPRSIAKNLTYPEVVTPYNIDKLQEMVQNGPNEH 338
Query: 196 --GHFKVCRKGRPVVL-YKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ LQIG + R L D D V+ NR PS+H+ SM+
Sbjct: 339 PGAKYVIRDSGERIDLRYSKRGGDIPLQIGYRVERNLMDDDVVIFNRQPSLHKMSMMGHR 398
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R E+ EL + +Q+++ Q+ +
Sbjct: 399 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHLPQSEETRAEIRELCMVPKQIVSPQANK 457
Query: 535 NLLSLSQDSLTAAYM 579
++ + QD+L A M
Sbjct: 458 PVMGIVQDTLCALLM 472
[150][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
RepID=A1YIA7_ISSOR
Length = 1647
Score = 104 bits (260), Expect = 4e-21
Identities = 70/190 (36%), Positives = 103/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA +L V N + L + E
Sbjct: 265 LMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTYPEIVTPYNIQKLTEMVRNGPNEH 324
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R L D D VL NR PS+H+ SM+
Sbjct: 325 PGAKYVIRENGDRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNRQPSLHKMSMMCHR 384
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL+EL A+ Q+I+ QS +
Sbjct: 385 VKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSELCAVPLQIISPQSNK 443
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 444 PVMGIVQDTL 453
[151][TOP]
>UniRef100_P04051 DNA-directed RNA polymerase III subunit RPC1 n=2 Tax=Saccharomyces
cerevisiae RepID=RPC1_YEAST
Length = 1460
Score = 104 bits (260), Expect = 4e-21
Identities = 66/198 (33%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC--------- 174
GKR D S RTV+ DP+L++ E+ VP ++A+ L V R N+ L +
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Query: 175 --ELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
L + + R G + L K+LQIGD++ R L DGD VL NR PS+H+ S++S
Sbjct: 430 ANYLLKRNEDARRNLRYGDRMKL--AKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILS 487
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +S
Sbjct: 488 HYAKIRPWRT-FRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKS 546
Query: 529 GRNLLSLSQDSLTAAYML 582
G +++ +QD +T +Y++
Sbjct: 547 GEPIIAATQDFITGSYLI 564
[152][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 104 bits (259), Expect = 6e-21
Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 12/197 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L + E+GVP IA+++ V N +L+ L+ +
Sbjct: 347 LMGKRVDFSARTVITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDQMLE-----LVRR 401
Query: 196 GH-------FKVCRKGRPVVLY---KKKDL--QIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G+ + + G + L K DL Q G + R + DGD V+ NR P++H+ S
Sbjct: 402 GNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLHKMS 461
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRVLP S+ +N C SP DFDGD ++ ++PQS+ R E+ + RQ+I
Sbjct: 462 MMGHRVRVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIIT 520
Query: 520 GQSGRNLLSLSQDSLTA 570
Q+ + ++ + QD+LTA
Sbjct: 521 PQANKPVMGIVQDTLTA 537
[153][TOP]
>UniRef100_B8A9M1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
RepID=B8A9M1_ORYSI
Length = 1465
Score = 104 bits (259), Expect = 6e-21
Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 10/187 (5%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
MK + + K + S R V+ GDP + L+ +GVP ++A+ + V V N L D
Sbjct: 300 MKTLFISKSSSFSSRGVITGDPYIGLNVVGVPEEVAKRMSVEEKVTDHNIAQLQD----- 354
Query: 184 LLEKGHFKVCRKGRPVV--LYKKKD--------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
++ KG + L KD L++G+++ R + DGD V +NRPPS +
Sbjct: 355 MMNKGLCLTYTDANSITYSLDAGKDNPNKKHTILKVGEIVNRRVFDGDIVFLNRPPSTDK 414
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
HS+ + V+V + INPL C PL DFD DC+ + P+S++AR E EL +D+QL
Sbjct: 415 HSVEAFYVQVHN-DHTIKINPLICDPLGADFDDDCVQIFYPRSLSARAEAKELYTVDKQL 473
Query: 514 INGQSGR 534
++ +G+
Sbjct: 474 VSSHNGK 480
[154][TOP]
>UniRef100_Q6CMC7 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
RepID=Q6CMC7_KLULA
Length = 1457
Score = 104 bits (259), Expect = 6e-21
Identities = 68/198 (34%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC--------- 174
GKR D S RTV+ DP+L++ E+ VP ++A+ L V R NK L
Sbjct: 368 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPG 427
Query: 175 ELRLLEKGHF--KVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
LL+K + R G V L K+ LQ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 428 ANYLLKKNEDARRNLRYGDRVKLAKQ--LQYGDVVERHIEDGDVVLFNRQPSLHRLSILS 485
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +S
Sbjct: 486 HYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKS 544
Query: 529 GRNLLSLSQDSLTAAYML 582
G +++ +QD +T +Y++
Sbjct: 545 GEPIIAATQDFITGSYLI 562
[155][TOP]
>UniRef100_Q6CL79 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
RepID=Q6CL79_KLULA
Length = 1720
Score = 104 bits (259), Expect = 6e-21
Identities = 71/190 (37%), Positives = 106/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA++L V N L E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEH 399
Query: 196 GHFK-VCRKG--RPVVLYKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K V R+ R + Y K+ LQ G + R +TD D VL NR PS+H+ SM++
Sbjct: 400 PGAKYVIRESGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHR 459
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ Q+++ QS +
Sbjct: 460 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNK 518
Query: 535 NLLSLSQDSL 564
+ + QD+L
Sbjct: 519 PCMGIVQDTL 528
[156][TOP]
>UniRef100_Q5A164 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5A164_CANAL
Length = 1448
Score = 104 bits (259), Expect = 6e-21
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 12/199 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE-------- 177
GKR D S RTV+ DP+L + E+ VP ++A+ L R NKK L
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Query: 178 ----LRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMI 345
++ E G + R G V L K LQIGD++ R + DGD VL NR PS+H+ S++
Sbjct: 426 ANYVMKQNEPGKRNL-RFGDRVKL--AKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSIL 482
Query: 346 SLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQ 525
S ++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +
Sbjct: 483 SHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPK 541
Query: 526 SGRNLLSLSQDSLTAAYML 582
SG +++ +QD +T +Y++
Sbjct: 542 SGEPIIAATQDFITGSYLI 560
[157][TOP]
>UniRef100_Q5A0Z3 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5A0Z3_CANAL
Length = 1448
Score = 104 bits (259), Expect = 6e-21
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 12/199 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE-------- 177
GKR D S RTV+ DP+L + E+ VP ++A+ L R NKK L
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Query: 178 ----LRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMI 345
++ E G + R G V L K LQIGD++ R + DGD VL NR PS+H+ S++
Sbjct: 426 ANYVMKQNEPGKRNL-RFGDRVKL--AKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSIL 482
Query: 346 SLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQ 525
S ++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +
Sbjct: 483 SHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPK 541
Query: 526 SGRNLLSLSQDSLTAAYML 582
SG +++ +QD +T +Y++
Sbjct: 542 SGEPIIAATQDFITGSYLI 560
[158][TOP]
>UniRef100_Q2PYS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Basidiobolus ranarum
RepID=Q2PYS1_9FUNG
Length = 1015
Score = 104 bits (259), Expect = 6e-21
Identities = 66/190 (34%), Positives = 106/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ E+GVP IA +L V N + + + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRNGPNEH 334
Query: 196 --GHFKVCRKGRPVVL-YKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ LQ G + R L +GD V+ NR PS+H+ SM+
Sbjct: 335 PGAKYVIRDTGERIDLRYHKRAGDIPLQYGYKVERHLNNGDVVIFNRQPSLHKMSMMGHK 394
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS + E+ E+ + +Q+I+ QS +
Sbjct: 395 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETKAEIKEICMVPKQIISPQSNK 453
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 454 PVMGIVQDTL 463
[159][TOP]
>UniRef100_Q0PQ13 DNA-directed RNA polymerase (Fragment) n=1 Tax=Canoparmelia
caroliniana RepID=Q0PQ13_9LECA
Length = 1016
Score = 104 bits (259), Expect = 6e-21
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 335 PGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHR 394
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 395 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNG 453
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 454 PLMGIVQDTLCGIYKM 469
[160][TOP]
>UniRef100_Q0PQ02 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lecanora hybocarpa
RepID=Q0PQ02_9LECA
Length = 1016
Score = 104 bits (259), Expect = 6e-21
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 335 PGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHR 394
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 395 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNG 453
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 454 PLMGIVQDTLCGIYKM 469
[161][TOP]
>UniRef100_Q0PQ00 DNA-directed RNA polymerase (Fragment) n=1 Tax=Umbilicaria
mammulata RepID=Q0PQ00_9LECA
Length = 1014
Score = 104 bits (259), Expect = 6e-21
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 335 PGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHR 394
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 395 VRVVPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNG 453
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 454 PLMGIVQDTLCGIYKM 469
[162][TOP]
>UniRef100_C5DJG5 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS
6340 RepID=C5DJG5_LACTC
Length = 1460
Score = 104 bits (259), Expect = 6e-21
Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC--------- 174
GKR D S RTVV DP+L++ E+ VP ++A+ L V R NK+ L
Sbjct: 369 GKRVDFSGRTVVSPDPNLSIDEVAVPDRVAKVLTYPEMVTRYNKQKLQQLVINGPNEHPG 428
Query: 175 ELRLLEKGH--FKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
LL+K + R G + L ++LQ GD++ R L DGD VL NR PS+H+ S++S
Sbjct: 429 ANYLLKKDEEARRNLRYGDRMKL--ARNLQYGDVVERHLEDGDVVLFNRQPSLHRLSILS 486
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +S
Sbjct: 487 HYAKIRPWRT-FRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKS 545
Query: 529 GRNLLSLSQDSLTAAYML 582
G +++ +QD +T +Y++
Sbjct: 546 GEPIIAATQDFITGSYLI 563
[163][TOP]
>UniRef100_C4YGE6 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YGE6_CANAL
Length = 1448
Score = 104 bits (259), Expect = 6e-21
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 12/199 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE-------- 177
GKR D S RTV+ DP+L + E+ VP ++A+ L R NKK L
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Query: 178 ----LRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMI 345
++ E G + R G V L K LQIGD++ R + DGD VL NR PS+H+ S++
Sbjct: 426 ANYVMKQNEPGKRNL-RFGDRVKL--AKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSIL 482
Query: 346 SLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQ 525
S ++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +
Sbjct: 483 SHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPK 541
Query: 526 SGRNLLSLSQDSLTAAYML 582
SG +++ +QD +T +Y++
Sbjct: 542 SGEPIIAATQDFITGSYLI 560
[164][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum
Wisconsin 54-1255 RepID=B6H9U6_PENCW
Length = 1733
Score = 104 bits (259), Expect = 6e-21
Identities = 71/205 (34%), Positives = 103/205 (50%), Gaps = 12/205 (5%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L L E+GVP A L V N + L R
Sbjct: 347 LRQNLMGKRVDFSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPYNIEKLQ-----R 401
Query: 184 LLEKG-------HFKVCRKGRPVVLYKKKDLQIGDLLY-----RPLTDGDKVLINRPPSI 327
L+ G + V G + L K LLY R L DGD +L NR PS+
Sbjct: 402 LVANGPNLHPGARYIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDDGDYILFNRQPSL 461
Query: 328 HQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDR 507
H+ SM+ VRV+P S+ +N SP DFDGD ++ ++PQ +R EL EL + +
Sbjct: 462 HKESMMGHRVRVMPFSTF-RMNLSVTSPYNADFDGDEMNLHVPQGEESRAELAELTLVPK 520
Query: 508 QLINGQSGRNLLSLSQDSLTAAYML 582
+++ Q L+ + QD+L Y +
Sbjct: 521 NIVSPQRNGPLMGIVQDTLCGIYKI 545
[165][TOP]
>UniRef100_UPI00006CF1E9 RNA polymerase Rpb1, domain 2 family protein n=1 Tax=Tetrahymena
thermophila RepID=UPI00006CF1E9
Length = 1759
Score = 103 bits (258), Expect = 8e-21
Identities = 70/216 (32%), Positives = 112/216 (51%), Gaps = 28/216 (12%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S R+V+ D +L L E+GVP IA+SL V VN++N + + L ++
Sbjct: 336 LMGKRVDFSARSVISPDANLWLDELGVPRSIADSLTVPEIVNQQNINRIRE-----LWKQ 390
Query: 196 GHFK-VCRKGRPVVLYKKKD---------------------------LQIGDLLYRPLTD 291
G K + + R +Y+ D ++IG ++ R L +
Sbjct: 391 GKIKSIMKPNREKQIYEAYDAIICSGDRQADDNFDMHVNDDYSYCSQIKIGVIIERALQN 450
Query: 292 GDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAA 471
GD VL NR PS+H+ SM+ VR+LP S+ +N +P DFDGD ++ ++PQS
Sbjct: 451 GDYVLFNRQPSLHKMSMMGHRVRILPYSTF-RLNLSVTTPYNADFDGDEMNMHVPQSYET 509
Query: 472 RVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYM 579
RVEL + + RQ++ ++ + ++ L QDSL M
Sbjct: 510 RVELGYICHVPRQIVTPKANKPVMGLVQDSLLGVAM 545
[166][TOP]
>UniRef100_Q5I2R7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hygrophoropsis
aurantiaca RepID=Q5I2R7_9HOMO
Length = 991
Score = 103 bits (258), Expect = 8e-21
Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL----- 180
++GKR D S RTV+ GDP+L L E+GVP IA +L Y R N+ EL
Sbjct: 258 LMGKRVDFSARTVITGDPNLQLDEVGVPRSIAMNL---TYPERVTPYNIAYLQELVRNGP 314
Query: 181 RLLEKGHFKVCRKGRPVVL-YKKKD---LQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+ V G + L Y K+ LQ G ++ R L DGD VL NR PS+H+ SM+S
Sbjct: 315 TAYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMS 374
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+++P S+ +N P DFDGD ++ +IPQS R EL+++ + RQ+I+ +
Sbjct: 375 HRVKLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPHA 433
Query: 529 GRNLLSLSQDSL 564
+ ++ + QD+L
Sbjct: 434 NKPVMGIVQDTL 445
[167][TOP]
>UniRef100_Q2PYS0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Entomophthora muscae
RepID=Q2PYS0_9FUNG
Length = 1007
Score = 103 bits (258), Expect = 8e-21
Identities = 65/190 (34%), Positives = 107/190 (56%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP L+++E+GVP IA +L V N + + + +
Sbjct: 265 LMGKRVDFSARTVITGDPMLSINEVGVPFSIARNLTFPEMVTSYNFEKMQNLVRNGPTQH 324
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L ++ LQ+G + R + +GD V+ NR PS+H+ SM+
Sbjct: 325 PGAKYVIRDDGVRIDLRHRRATGDMALQVGFCVERHIDNGDVVIFNRQPSLHKMSMMGHH 384
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRVLP S+ +N SP DFDGD ++ ++PQS AR E+ EL+ + +Q+++ Q +
Sbjct: 385 VRVLPFST-FRLNLSVTSPYNADFDGDEMNMHVPQSHEARSEVLELMMVSKQIVSPQGNK 443
Query: 535 NLLSLSQDSL 564
++ + QDSL
Sbjct: 444 PVMGIVQDSL 453
[168][TOP]
>UniRef100_Q2PYR6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coemansia reversa
RepID=Q2PYR6_9FUNG
Length = 1013
Score = 103 bits (258), Expect = 8e-21
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCE--LRLL 189
++GKR D S RTV+ GDP++++ ++GVP IA +L V N L +
Sbjct: 272 LMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTYPETVTPYNIDRLQEYVRNGRDAY 331
Query: 190 EKGHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
F V G + L K LQIG + R L D D ++ NR PS+H+ SM+
Sbjct: 332 PGAKFVVRDNGEQINLQYNKQRGDFPLQIGYRVERNLIDDDVIIFNRQPSLHKMSMMGHR 391
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS +R E+ E+ + +Q I+ QS +
Sbjct: 392 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEESRAEIKEICMVPKQFISPQSNK 450
Query: 535 NLLSLSQDSLTA 570
++ + QD+L A
Sbjct: 451 PVMGIVQDTLCA 462
[169][TOP]
>UniRef100_Q2PYR3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhizophlyctis rosea
RepID=Q2PYR3_9FUNG
Length = 1006
Score = 103 bits (258), Expect = 8e-21
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 6/194 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC-CELRLLE 192
++GKR D S RTV+ GDP+L++ ++GVP IA +L V + N + L
Sbjct: 266 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPEVVTKCNFEKLAAAVANGPTAH 325
Query: 193 KGHFKVCRKG--RPVVLYKKKD---LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSV 357
G V R + Y ++D L+IGD + R L D D ++ NR PS+H+ SM+ V
Sbjct: 326 PGAKYVINSNGDRTDLRYAREDSVILKIGDKVERHLMDDDLIIFNRQPSLHKMSMMGHRV 385
Query: 358 RVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRN 537
+V+P S+ +N SP DFDGD ++ ++PQS + E+ EL + RQ+++ Q
Sbjct: 386 KVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSYQTKAEIQELCVVPRQIVSPQKNGP 444
Query: 538 LLSLSQDSLTAAYM 579
++ + QD+L M
Sbjct: 445 VMGIVQDTLCGITM 458
[170][TOP]
>UniRef100_Q2PYQ0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Piptocephalis
corymbifera RepID=Q2PYQ0_9FUNG
Length = 565
Score = 103 bits (258), Expect = 8e-21
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 12/195 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L + E+GVP IA++L V N + L ++L+
Sbjct: 74 LMGKRVDFSARTVITGDPNLCIDEVGVPISIAKNLTFPELVTSYNMERL-----MQLVRN 128
Query: 196 G-------HFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G + G + L K LQ+G + R L DGD V+ NR PS+H+ S
Sbjct: 129 GPTVHPGAKYVFTDAGDRIDLRYKTIGEDVPLQLGWRVERHLVDGDLVVFNRQPSLHKMS 188
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRV+P S+ +N SP DFDGD ++ ++PQS ++ E+ EL + + +I+
Sbjct: 189 MMGHRVRVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQSYESKAEIRELCMVPKNIIS 247
Query: 520 GQSGRNLLSLSQDSL 564
Q ++ + QD+L
Sbjct: 248 PQKNAPVMGIVQDTL 262
[171][TOP]
>UniRef100_C5MI79 DNA-directed RNA polymerase (Fragment) n=1 Tax=Candida tropicalis
MYA-3404 RepID=C5MI79_CANTT
Length = 1159
Score = 103 bits (258), Expect = 8e-21
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 14/201 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGH 201
GKR D S RTV+ DP+L + E+ VP ++A+ L R N+K L RL+ G
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKL-----QRLVYNGP 420
Query: 202 FK------VCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
V ++ P + K+LQIGD++ R + DGD VL NR PS+H+ S
Sbjct: 421 DTYPGANYVAKQNEPGKRNLRFGDRAKLAKNLQIGDVVERHIEDGDVVLFNRQPSLHRLS 480
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
++S +V P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+
Sbjct: 481 ILSHYAKVRPWRT-FRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 539
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
+SG +++ +QD +T +Y++
Sbjct: 540 PKSGEPIIAATQDFITGSYLI 560
[172][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R4Y0_PICPG
Length = 1743
Score = 103 bits (258), Expect = 8e-21
Identities = 69/190 (36%), Positives = 106/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA++L V + N L + E
Sbjct: 341 LMGKRVDFSARTVISGDPNLELDQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEH 400
Query: 196 GHFKVCRKG---RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R L D D VL NR PS+H+ SM++
Sbjct: 401 PGAKYVIRDNGDRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHR 460
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ Q+++ QS +
Sbjct: 461 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNK 519
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 520 PVMGIVQDTL 529
[173][TOP]
>UniRef100_A5H2E5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ophioparma lapponica
RepID=A5H2E5_9LECA
Length = 981
Score = 103 bits (258), Expect = 8e-21
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N L + +
Sbjct: 256 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKTGPNDH 315
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 316 PGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHR 375
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 376 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNG 434
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 435 PLMGIVQDTLCGVYKM 450
[174][TOP]
>UniRef100_A5H2E3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cetradonia sp. AFTOL
1657 RepID=A5H2E3_9LECA
Length = 984
Score = 103 bits (258), Expect = 8e-21
Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 12/201 (5%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP +A +L V N L +L++
Sbjct: 256 LMGKRVDFSARTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNIHKLH-----QLVKN 310
Query: 196 G-------HFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G + + G + L K LQ G + R + DGD ++ NR PS+H+ S
Sbjct: 311 GPNDHPGAKYVIRADGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSLHKES 370
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 371 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVS 429
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y +
Sbjct: 430 SQRNGPLMGIVQDTLCGTYKM 450
[175][TOP]
>UniRef100_A5H275 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lecidea fuscoatra
RepID=A5H275_9LECA
Length = 1016
Score = 103 bits (258), Expect = 8e-21
Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L + +
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIEKLHQXVKNGPNDH 334
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 335 PGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHR 394
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 395 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNG 453
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 454 PLMGIVQDTLAGIYKM 469
[176][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
RepID=UPI0000F24379
Length = 1739
Score = 103 bits (257), Expect = 1e-20
Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA +L V N L + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEVVTPYNIHRLTEYVRNGPNEH 399
Query: 196 GHFKVCRKG---RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R L D D VL NR PS+H+ SM++
Sbjct: 400 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHR 459
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL+E+ A+ Q+++ QS +
Sbjct: 460 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNK 518
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 519 PVMGIVQDTL 528
[177][TOP]
>UniRef100_C4QEL8 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
RepID=C4QEL8_SCHMA
Length = 1785
Score = 103 bits (257), Expect = 1e-20
Identities = 66/191 (34%), Positives = 109/191 (57%), Gaps = 6/191 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L L ++GVP IA++L V + N +L + L
Sbjct: 245 LMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPEIVTQFNIDHLQKLVQNGTLYP 304
Query: 196 GHFKVCRKG--RPVVLYKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSV 357
G + R+ R + Y K LQ+G ++ R + + D V+ NR P++H+ SM+ V
Sbjct: 305 GAKFIVRENGDRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVIFNRQPTLHKMSMMCHRV 364
Query: 358 RVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRN 537
+VLP S+ +N SP DFDGD ++ ++PQSV + E+++L + R +I Q+ +
Sbjct: 365 KVLPWSTF-RLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKP 423
Query: 538 LLSLSQDSLTA 570
++ + QD+LTA
Sbjct: 424 VMGIVQDTLTA 434
[178][TOP]
>UniRef100_Q2U3T5 DNA-directed RNA polymerase n=1 Tax=Aspergillus oryzae
RepID=Q2U3T5_ASPOR
Length = 1447
Score = 103 bits (257), Expect = 1e-20
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE-KG 198
GKR D S RTV+ DP+L + E+ VP +A+++ V R NK+ L + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Query: 199 HFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ +KG + K LQ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYLVKKGSTFKTFLKYGSLNMIADQLQEGDVVERHIEDGDIVLFNRQPSLHKLSILSHF 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 492 AKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 535 NLLSLSQDSLTAAYML 582
++S QD ++AAY+L
Sbjct: 551 PIISAIQDFISAAYIL 566
[179][TOP]
>UniRef100_Q2PYS4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Spizellomyces
punctatus RepID=Q2PYS4_SPIPN
Length = 792
Score = 103 bits (257), Expect = 1e-20
Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ E+GVP IA +L V N L + LE
Sbjct: 269 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPETVTPYNIHRLQEMVRKGPLEH 328
Query: 196 GHFKVCRK--GRPVVL-YKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
G K K G+ + L Y ++ LQ G + R L D D V+ NR PS+H+ SM+
Sbjct: 329 GGAKYVIKDDGQRIDLRYNRRGGDIHLQNGYRVERHLMDNDIVIFNRQPSLHKMSMMGHR 388
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ N SP DFDGD ++ ++PQS + EL EL + +Q+++ Q
Sbjct: 389 VKVMPYST-FRXNLSVTSPYNADFDGDEMNLHVPQSYETKAELMELCMVPKQIVSPQKNA 447
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 448 PVMGIVQDTL 457
[180][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WN64_CANDC
Length = 1735
Score = 103 bits (257), Expect = 1e-20
Identities = 69/190 (36%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA++L V N L + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEH 399
Query: 196 GHFKVCRKG---RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R L D D VL NR PS+H+ SM++
Sbjct: 400 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHR 459
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++ QS +
Sbjct: 460 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVSPQSNK 518
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 519 PVMGIVQDTL 528
[181][TOP]
>UniRef100_B8NTG3 DNA-directed RNA polymerase n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8NTG3_ASPFN
Length = 1436
Score = 103 bits (257), Expect = 1e-20
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE-KG 198
GKR D S RTV+ DP+L + E+ VP +A+++ V R NK+ L + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Query: 199 HFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ +KG + K LQ GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYLVKKGSTFKTFLKYGSLNMIADQLQEGDVVERHIEDGDIVLFNRQPSLHKLSILSHF 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 492 AKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 535 NLLSLSQDSLTAAYML 582
++S QD ++AAY+L
Sbjct: 551 PIISAIQDFISAAYIL 566
[182][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 103 bits (257), Expect = 1e-20
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L + E
Sbjct: 346 LMGKRVDFSARTVITGDPNLSLDELGVPRTIAKTLTYPETVTPYNIYQLQELVRNGPDEH 405
Query: 196 GHFKVCRKG---RPVVLYKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ L+ G + R + DGD V+ NR PS+H+ SM+
Sbjct: 406 PGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHR 465
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+RV+P S+ +N SP DFDGD ++ ++PQS R E+ E+ + RQ+++ QS +
Sbjct: 466 IRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEIAMVPRQIVSPQSNK 524
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 525 PVMGIVQDTL 534
[183][TOP]
>UniRef100_A7TNS6 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM
70294 RepID=A7TNS6_VANPO
Length = 1460
Score = 103 bits (257), Expect = 1e-20
Identities = 63/196 (32%), Positives = 108/196 (55%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNL----LDCCELRLL 189
GKR D S RTV+ DP+L++ E+ VP ++A+ L V R N++ L ++ +
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNREKLQALVINGPNVHPG 429
Query: 190 EKGHFKVCRKGRPVVLYKK-----KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K L++GD++ R L DGD VL NR PS+H+ S++S
Sbjct: 430 ANYILKANEEARRNLRYGDRLKIAKQLRVGDIVERHLEDGDIVLFNRQPSLHRLSILSHF 489
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +SG
Sbjct: 490 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGE 548
Query: 535 NLLSLSQDSLTAAYML 582
+++ +QD +T +Y++
Sbjct: 549 PIIAATQDFITGSYLI 564
[184][TOP]
>UniRef100_A7J5B1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Teloschistes exilis
RepID=A7J5B1_9LECA
Length = 1003
Score = 103 bits (257), Expect = 1e-20
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA++L V N + L + E
Sbjct: 264 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEH 323
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS H+ SM+
Sbjct: 324 PGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSXHKESMMGHR 383
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 384 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNS 442
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 443 PLMGIVQDTLCGIYKI 458
[185][TOP]
>UniRef100_A7J591 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anaptychia palmatula
RepID=A7J591_9LECA
Length = 1020
Score = 103 bits (257), Expect = 1e-20
Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 12/201 (5%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L +L++
Sbjct: 280 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLH-----QLIKN 334
Query: 196 G-------HFKVCRKGRPVVL-YKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G + + G + L Y ++ LQ G + R + DGD ++ NR PS+H+ S
Sbjct: 335 GPNEHPGARYVIRDNGERIDLRYHRRAGDLVLQYGWKVERHIVDGDFIIFNRQPSLHKES 394
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 395 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVS 453
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y +
Sbjct: 454 PQRNSPLMGIVQDTLCGIYKI 474
[186][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GID7_PICST
Length = 1739
Score = 103 bits (257), Expect = 1e-20
Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA +L V N L + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEVVTPYNIHRLTEYVRNGPNEH 399
Query: 196 GHFKVCRKG---RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R L D D VL NR PS+H+ SM++
Sbjct: 400 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHR 459
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL+E+ A+ Q+++ QS +
Sbjct: 460 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNK 518
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 519 PVMGIVQDTL 528
[187][TOP]
>UniRef100_A2QAT7 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QAT7_ASPNC
Length = 1747
Score = 103 bits (257), Expect = 1e-20
Identities = 68/200 (34%), Positives = 104/200 (52%), Gaps = 7/200 (3%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L
Sbjct: 350 LRQNLMGKRVDFSARTVITGDPNLSLEEVGVPKSIARTLTYPEVVTPYNIEKLQTLVSNG 409
Query: 184 LLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLY-----RPLTDGDKVLINRPPSIHQHSM 342
E + V G + L K LLY R + DGD +L NR PS+H+ SM
Sbjct: 410 PNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESM 469
Query: 343 ISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLING 522
+ VRV+P S+ +N +P DFDGD ++ ++PQS +R EL++L + +++
Sbjct: 470 MGHRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSP 528
Query: 523 QSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y +
Sbjct: 529 QRNGPLMGIVQDTLCGIYKI 548
[188][TOP]
>UniRef100_A1YIB9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allomyces macrogynus
RepID=A1YIB9_ALLMA
Length = 1008
Score = 103 bits (257), Expect = 1e-20
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 14/197 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L++ ++GVP IA +L V N L + L+
Sbjct: 264 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTYPEIVTPYNINKLQE-----LVHN 318
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G + G V+ D LQ G ++ R L DGD ++ NR PS+H+
Sbjct: 319 GPTQ--HPGAKYVIRDNGDRVDLRFIGAKGNLGLQYGWIVERHLDDGDVIIFNRQPSLHK 376
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ V+V+P S+ +N SP DFDGD ++ ++PQS+ A+ E+ +L + Q+
Sbjct: 377 MSMMGHKVKVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSLEAKAEIQQLCMVPLQI 435
Query: 514 INGQSGRNLLSLSQDSL 564
I+ QS + ++ + QD+L
Sbjct: 436 ISPQSNKPVMGIVQDTL 452
[189][TOP]
>UniRef100_A1YIB5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Mucor hiemalis
RepID=A1YIB5_9FUNG
Length = 1009
Score = 103 bits (257), Expect = 1e-20
Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA +L V N L LE
Sbjct: 266 LMGKRVDFSARTVITGDPNLNLDQVGVPRSIARNLTYPEIVTPYNIDKLQALVRNGPLEH 325
Query: 196 --GHFKVCRKGRPVVL-YKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y+K+ LQ G + R + D D V+ NR PS+H+ SM+
Sbjct: 326 PGAKYVIRDNGERIDLRYRKRAGEIPLQYGYRVERHINDDDVVIFNRQPSLHKMSMMGHR 385
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS+ R E+ E+ + +Q+++ QS +
Sbjct: 386 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSNK 444
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 445 PVMGIVQDTL 454
[190][TOP]
>UniRef100_A1YIB2 DNA-directed RNA polymerase (Fragment) n=2 Tax=Smittium culisetae
RepID=A1YIB2_SMICU
Length = 1025
Score = 103 bits (257), Expect = 1e-20
Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 7/195 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L + ++GVP IA++L V N L + + E
Sbjct: 280 LMGKRVDFSARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEH 339
Query: 196 --GHFKVCRKGRPVVL-YKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ LQIG + R L D D V+ NR PS+H+ SM+
Sbjct: 340 PGAKYVIRDSGERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNRQPSLHKMSMMGHR 399
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+ S+ +N SP DFDGD ++ ++PQS R E+ EL + +Q+++ Q R
Sbjct: 400 VKVMDYSTF-RLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVRELCMVPKQIVSPQGNR 458
Query: 535 NLLSLSQDSLTAAYM 579
++ + QD+L A M
Sbjct: 459 PIMGIVQDTLCAMIM 473
[191][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 103 bits (256), Expect = 1e-20
Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 12/197 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L + ++GVP IA++L V N + + L+++
Sbjct: 350 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKMSE-----LVQR 404
Query: 196 GH-------FKVCRKGRPVVLY---KKKDL--QIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G+ + + G + L K DL Q G + R + DGD V+ NR P++H+ S
Sbjct: 405 GNSQYPGAKYIIRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMS 464
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ V+VLP S+ +N C SP DFDGD ++ ++PQS+ R E+ L RQ+I
Sbjct: 465 MMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIIT 523
Query: 520 GQSGRNLLSLSQDSLTA 570
Q+ + ++ + QD+LTA
Sbjct: 524 PQANKPVMGIVQDTLTA 540
[192][TOP]
>UniRef100_Q06VN9 DNA-directed RNA polymerase n=1 Tax=Trichoplusia ni ascovirus 2c
RepID=Q06VN9_TNAVC
Length = 833
Score = 103 bits (256), Expect = 1e-20
Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 3/196 (1%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
+++ +LGKR++ + RTV+ DP L L ++G P +A+ L + V N L E
Sbjct: 300 IRNNLLGKRSEMAGRTVIGPDPTLKLDQVGFPRVMAQHLYIPEKVTESN----LQWAEQM 355
Query: 184 LLEKGHF-KVCRKGRPVVLYKKKD--LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+L G ++ R G+ KKD +Q GD + RPL DGD VL+NR P++H+ SM++
Sbjct: 356 VLHNGTKPRIIRNGK-----MKKDCAIQCGDFICRPLQDGDIVLMNRQPTLHKGSMMAFR 410
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+R L S ++N DFDGD ++ ++PQSVAA VEL L L +G
Sbjct: 411 IR-LHESLTFTLNLATTKAFNADFDGDEMNCFVPQSVAASVELQHLSTPTACLNSGDKAS 469
Query: 535 NLLSLSQDSLTAAYML 582
+ + QD LTAAY +
Sbjct: 470 --ICIVQDCLTAAYCM 483
[193][TOP]
>UniRef100_Q30BD8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cyanophora paradoxa
RepID=Q30BD8_CYAPA
Length = 1000
Score = 103 bits (256), Expect = 1e-20
Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 7/193 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE- 192
++GKR D S RTV+ DP+L + ++GVP IA +L V N + E
Sbjct: 254 LMGKRVDFSARTVITADPNLGIDQVGVPRSIALNLTTPEIVTPYNMDRMYQLIRAGPTEY 313
Query: 193 KGHFKVCRKG--RPVVLYKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
G + R R + Y +K L+ G + R + DGD VL NR PS+H+ S+++
Sbjct: 314 PGARYIIRSDGTRFDLRYVRKASDLHLEPGYRVERHIQDGDYVLFNRQPSLHKMSIMAHR 373
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
++V+P S+ +N SP DFDGD ++ ++PQS R E +E++A+ RQ+++ QS R
Sbjct: 374 IKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSFETRAEASEIIAVPRQIVSPQSNR 432
Query: 535 NLLSLSQDSLTAA 573
++ + QD+L A+
Sbjct: 433 PVMGIVQDTLMAS 445
[194][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KGG3_CRYNE
Length = 1786
Score = 103 bits (256), Expect = 1e-20
Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 10/197 (5%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL- 180
M+ ++GKR D S RTV+ GDP+L L ++GVP IA +L Y R N++ L
Sbjct: 352 MRGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTL---TYPERVTPYNIVYLQTLV 408
Query: 181 ----RLLEKGHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
+ V G V L +K LQ G ++ R L DGD VL NR PS+H+
Sbjct: 409 NNGPATYPGARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHK 468
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+S V+++ S+ +N SP DFDGD ++ ++PQS R EL+++ + RQ+
Sbjct: 469 MSMMSHRVKLMNYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQI 527
Query: 514 INGQSGRNLLSLSQDSL 564
++ Q+ + ++ + QD+L
Sbjct: 528 VSPQANKPVMGIVQDTL 544
[195][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0D054_ASPTN
Length = 1742
Score = 103 bits (256), Expect = 1e-20
Identities = 68/200 (34%), Positives = 104/200 (52%), Gaps = 7/200 (3%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L
Sbjct: 352 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNG 411
Query: 184 LLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLY-----RPLTDGDKVLINRPPSIHQHSM 342
E + V G + L K LLY R + DGD +L NR PS+H+ SM
Sbjct: 412 PNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESM 471
Query: 343 ISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLING 522
+ VRV+P S+ +N +P DFDGD ++ ++PQS +R EL++L + +++
Sbjct: 472 MGHRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSP 530
Query: 523 QSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y +
Sbjct: 531 QRNGPLMGIVQDTLCGIYKI 550
[196][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2W4S0_PYRTR
Length = 1742
Score = 103 bits (256), Expect = 1e-20
Identities = 65/201 (32%), Positives = 107/201 (53%), Gaps = 12/201 (5%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L ++GVP IA +L V + N L + L+
Sbjct: 348 LMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTN-----LVRN 402
Query: 196 G-------HFKVCRKGRPVVLYKKKDL-----QIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G ++ + G + L K+L Q G + R + D D ++ NR PS+H+ S
Sbjct: 403 GPNQHPGANYVIKADGARLDLKHNKNLDDLRLQYGWKVERHINDDDVIIFNRQPSLHKES 462
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ V+V+P S+ +N SP DFDGD ++ ++PQS R E+ L + +Q+++
Sbjct: 463 MMGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSDETRAEVQNLCMVPKQIVS 521
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
Q + L+ + QD+L Y +
Sbjct: 522 PQKNQPLMGIVQDTLLGVYKM 542
[197][TOP]
>UniRef100_A7J593 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pleopsidium gobiense
RepID=A7J593_9LECA
Length = 1017
Score = 103 bits (256), Expect = 1e-20
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+++L E+GVP IA +L V N L + E
Sbjct: 278 LMGKRVDFSARTVITGDPNISLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 337
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 338 PGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHR 397
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 398 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNG 456
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 457 PLMGIVQDTLCGIYKM 472
[198][TOP]
>UniRef100_A7J592 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyxine subcinerea
RepID=A7J592_9LECA
Length = 1015
Score = 103 bits (256), Expect = 1e-20
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+++L E+GVP IA +L V N L + E
Sbjct: 274 LMGKRVDFSARTVITGDPNISLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 333
Query: 196 --GHFKVCRKGRPVVL-YKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 334 PGARYVIRDTGERIDLRYHKRAGDISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHR 393
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 394 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNG 452
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 453 PLMGIVQDTLCGIYKI 468
[199][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 103 bits (256), Expect = 1e-20
Identities = 68/200 (34%), Positives = 105/200 (52%), Gaps = 7/200 (3%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANG 412
Query: 184 LLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLY-----RPLTDGDKVLINRPPSIHQHSM 342
E + V G + L + LLY R L DGD +L NR PS+H+ SM
Sbjct: 413 PNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKESM 472
Query: 343 ISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLING 522
++ VRV+P S+ +N +P DFDGD ++ ++PQS +R EL++L + +++
Sbjct: 473 MAHRVRVMPYST-FRMNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSP 531
Query: 523 QSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y +
Sbjct: 532 QRNGPLMGIVQDTLCGIYKI 551
[200][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 102 bits (255), Expect = 2e-20
Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 7/194 (3%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL- 180
+++ ++GKR + S RTV+ DP LAL E+GVP +A +L V N L +
Sbjct: 345 VRNNLMGKRVNFSARTVITADPQLALDEVGVPRSVAMTLTYPEVVTPYNIDRLWEAVRNG 404
Query: 181 -RLLEKGHFKVCRKGRPVVLY---KKKD--LQIGDLLYRPLTDGDKVLINRPPSIHQHSM 342
F + G+ + L + D L+ G ++ R L +GD VL NR PS+H+ S+
Sbjct: 405 PNAYPGALFVIRNDGKRIALQFVRRSADIVLEPGCVVERHLLNGDLVLFNRQPSLHRMSI 464
Query: 343 ISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLING 522
+ VR+LP S+ +N SP DFDGD ++ ++PQS R E+ EL+A+ + +++
Sbjct: 465 MGHRVRILPYSTF-RMNLSATSPYNADFDGDEMNLHVPQSEEVRAEIKELMAVPKNIVSP 523
Query: 523 QSGRNLLSLSQDSL 564
Q+ R ++ + QDSL
Sbjct: 524 QANRPVMGIVQDSL 537
[201][TOP]
>UniRef100_C1E5P6 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
RepID=C1E5P6_9CHLO
Length = 1479
Score = 102 bits (255), Expect = 2e-20
Identities = 65/195 (33%), Positives = 105/195 (53%), Gaps = 8/195 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGH 201
GKR D S RTV+ DP+L + E+GVP IA+ + V+R N + + + + +
Sbjct: 374 GKRVDFSGRTVISPDPNLRIDEVGVPMHIAKMMTYPEVVSRHNIEMIRERVRNGMNKHPG 433
Query: 202 FKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSV 357
R Y K +L+ GD++ R L DGD +L NR PS+H+ S+++
Sbjct: 434 ANFVRFKSGGTQYLKYGDRRRVASELKYGDVVERHLHDGDVLLFNRQPSLHKMSIMAHRA 493
Query: 358 RVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRN 537
RV+P ++ N C+P DFDGD ++ + PQ+ AR E L+++ L ++G
Sbjct: 494 RVMPWRTL-RFNECVCTPYNADFDGDEMNIHCPQTEEARAEAINLMSVHNNLCTPKNGEI 552
Query: 538 LLSLSQDSLTAAYML 582
L++ +QD LTA+Y+L
Sbjct: 553 LVAATQDFLTASYIL 567
[202][TOP]
>UniRef100_Q5I3E1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Calostoma
cinnabarinum RepID=Q5I3E1_9HOMO
Length = 994
Score = 102 bits (255), Expect = 2e-20
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L E+GVP +A +L Y R N+ EL
Sbjct: 261 LMGKRVDFSARTVITGDPNLELDEVGVPISVAMNL---TYPERVTPFNIHKLQELVRNGP 317
Query: 196 GHFKVCR-----KGRPVVL-YKKKD---LQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+ R G + L Y K+ LQ G ++ R L DGD VL NR PS+H+ SM+S
Sbjct: 318 NEYPGARYVVRDTGERIDLRYNKRTDAFLQHGWIVERHLRDGDYVLFNRQPSLHKMSMMS 377
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
V+++P S+ +N P DFDGD ++ +IPQS R EL+++ + Q+I+ Q+
Sbjct: 378 HRVKLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPLQIISPQA 436
Query: 529 GRNLLSLSQDSL 564
+ ++ + QD+L
Sbjct: 437 NKPVMGIVQDTL 448
[203][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5ACI7_CANAL
Length = 1728
Score = 102 bits (255), Expect = 2e-20
Identities = 69/190 (36%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA++L V N L + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEH 399
Query: 196 GHFKVCRKG---RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R L D D VL NR PS+H+ SM++
Sbjct: 400 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHR 459
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++ QS +
Sbjct: 460 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNK 518
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 519 PVMGIVQDTL 528
[204][TOP]
>UniRef100_Q2PYQ9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Endogone pisiformis
RepID=Q2PYQ9_9FUNG
Length = 845
Score = 102 bits (255), Expect = 2e-20
Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L E+GVP IA +L V N L E
Sbjct: 105 LMGKRVDFSARTVITGDPNLMLDEVGVPRSIARNLTYPEIVTPYNIDKLQLMVRNGPTEH 164
Query: 196 --GHFKVCRKGRPVVL-YKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ L G + R + DGD V+ NR PS+H+ SM+
Sbjct: 165 PGAKYVIRDTGERIDLRYHKRAGDIPLSYGYKVERHINDGDVVIFNRQPSLHKMSMMGHR 224
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+RV+P S+ +N SP DFDGD ++ ++PQSV R E+ E+ + +Q+++ QS
Sbjct: 225 IRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICRVPKQIVSPQSNX 283
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 284 PVMGIVQDTL 293
[205][TOP]
>UniRef100_Q0PQ08 DNA-directed RNA polymerase (Fragment) n=1 Tax=Echinoplaca
strigulacea RepID=Q0PQ08_9LECA
Length = 1017
Score = 102 bits (255), Expect = 2e-20
Identities = 69/201 (34%), Positives = 106/201 (52%), Gaps = 12/201 (5%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP +A +L V N + L +L++
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNIQKL-----HQLVKN 329
Query: 196 G-------HFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G + + G + L K LQ G + R +TDGD ++ NR PS+H+ S
Sbjct: 330 GPNDHPGAKYVIRDTGERIDLRHHKRAGELSLQYGWKVERHITDGDFIIFNRQPSLHKES 389
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+ L + RQ+++
Sbjct: 390 MMGHRVRVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQSEETRSEVANLCWVPRQILS 448
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
L+ + QDSL Y +
Sbjct: 449 PAKNGPLMGIVQDSLCGFYKM 469
[206][TOP]
>UniRef100_Q0PQ01 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bacidia schweinitzii
RepID=Q0PQ01_9LECA
Length = 1016
Score = 102 bits (255), Expect = 2e-20
Identities = 68/201 (33%), Positives = 107/201 (53%), Gaps = 12/201 (5%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA++L V N + L +L++
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLH-----QLVKN 329
Query: 196 G-------HFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G + + G + L K LQ G + R + DGD ++ NR PS+H+ S
Sbjct: 330 GPNDHPGAKYVLRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKES 389
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 390 MMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNVVS 448
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y +
Sbjct: 449 PQRNGPLMGIVQDTLCGIYKI 469
[207][TOP]
>UniRef100_Q0CS43 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0CS43_ASPTN
Length = 1450
Score = 102 bits (255), Expect = 2e-20
Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLE-KG 198
GKR D S RTV+ DP+L + E+ VP +A+++ V R NK+ L + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Query: 199 HFKVCRKGRPVVLYKK--------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ +KG + K +Q GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYLMKKGADYKTFLKYGNLNMIADQIQEGDVVERHIEDGDIVLFNRQPSLHKLSILSHF 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+V P +N C+P DFDGD ++ ++PQ+ AR E EL+ + L ++G
Sbjct: 492 AKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 535 NLLSLSQDSLTAAYML 582
++S QD ++AAY+L
Sbjct: 551 PIISAIQDFISAAYIL 566
[208][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YN85_CANAL
Length = 1742
Score = 102 bits (255), Expect = 2e-20
Identities = 69/190 (36%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA++L V N L + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEH 399
Query: 196 GHFKVCRKG---RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R L D D VL NR PS+H+ SM++
Sbjct: 400 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHR 459
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++ QS +
Sbjct: 460 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNK 518
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 519 PVMGIVQDTL 528
[209][TOP]
>UniRef100_C4R7G6 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R7G6_PICPG
Length = 1460
Score = 102 bits (255), Expect = 2e-20
Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNL----LDCCELRLL 189
GKR D S RTV+ DP+L + E+ VP ++A+ L V R NK L L+ ++
Sbjct: 371 GKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPEKVTRYNKHKLQQLVLNGPDVHPG 430
Query: 190 EKGHFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + + + LQIGD++ R L DGD VL NR PS+H+ S++S
Sbjct: 431 ANYLLKRDEQNRRNLRFGNRQKLANTLQIGDIVERHLEDGDVVLFNRQPSLHRLSILSHF 490
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +SG
Sbjct: 491 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARSEAMNLMGVKNNLLTPKSGE 549
Query: 535 NLLSLSQDSLTAAYML 582
+++ +QD +T +Y++
Sbjct: 550 PIIAATQDFITGSYLI 565
[210][TOP]
>UniRef100_A7J590 DNA-directed RNA polymerase (Fragment) n=1 Tax=Coccocarpia
erythroxyli RepID=A7J590_9LECA
Length = 997
Score = 102 bits (255), Expect = 2e-20
Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 12/201 (5%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L +L++
Sbjct: 256 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLH-----QLVKN 310
Query: 196 G-------HFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G + + G + L K LQ G + R + DGD ++ NR PS H+ S
Sbjct: 311 GPNDHPGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSXHKES 370
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRV+P S+ +N +P DFDGD ++ ++PQS R E+N+L + +++
Sbjct: 371 MMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVS 429
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y +
Sbjct: 430 PQKNGPLMGIVQDTLCGIYKI 450
[211][TOP]
>UniRef100_A3GEY3 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GEY3_PICST
Length = 1448
Score = 102 bits (255), Expect = 2e-20
Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 16/203 (7%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKG- 198
GKR D S RTV+ DP+L + E+ VP +A+ L R N+K L RL+ G
Sbjct: 368 GKRVDFSGRTVISPDPNLKIDEVAVPELVAKVLTYPERCTRYNRKKL-----QRLVVNGP 422
Query: 199 ---------------HFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQ 333
+ R G V L K+LQIGDL+ R + DGD VL NR PS+H+
Sbjct: 423 DIHPGANYVMKQNEQAKRNLRFGDRVKL--AKNLQIGDLVERHIEDGDVVLFNRQPSLHR 480
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
S++S ++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L
Sbjct: 481 LSILSHYAKIRPWRT-FRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 539
Query: 514 INGQSGRNLLSLSQDSLTAAYML 582
+ +SG +++ +QD +T +Y++
Sbjct: 540 LTPKSGEPIIAATQDFITGSYLI 562
[212][TOP]
>UniRef100_A1YIC4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces
hyalinus RepID=A1YIC4_9FUNG
Length = 1003
Score = 102 bits (255), Expect = 2e-20
Identities = 65/190 (34%), Positives = 103/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L + ++GVP IA +L V N + L+ C + E
Sbjct: 260 LMGKRVDFSARTVITGDPNLNIDQVGVPRSIARNLTFPETVTPFNIERLMACVQNGPTEH 319
Query: 196 --GHFKVCRKGRPVVL-YKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ LQ G + R L D D ++ NR PS+H+ SM+
Sbjct: 320 PGAKYVIRDNGERIDLRYSKRGGDIHLQTGYKVERHLVDDDLIIFNRQPSLHKMSMMGHR 379
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N +P DFDGD ++ ++PQ+ R E+ EL + RQ+++ Q
Sbjct: 380 VKVMPYST-FRLNLSVTTPYNADFDGDEMNMHVPQTHETRAEVQELCMVPRQIVSPQKNA 438
Query: 535 NLLSLSQDSL 564
+ + QDSL
Sbjct: 439 PCMGIVQDSL 448
[213][TOP]
>UniRef100_A5ULN6 DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter smithii ATCC
35061 RepID=A5ULN6_METS3
Length = 894
Score = 102 bits (255), Expect = 2e-20
Identities = 62/195 (31%), Positives = 107/195 (54%), Gaps = 8/195 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL--RLLEK 195
GKR + S RTV+ DP+++++E+GVP IA+ + V YVN N + E +
Sbjct: 315 GKRVNFSARTVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDEMRTYIENGPNVHPG 374
Query: 196 GHFKVCRKGRPVVLYKK------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSV 357
++ + GR + +Y + + L+ G ++ R L DGD VL NR PS+H+ SM++ V
Sbjct: 375 ANYVIRTDGRKIRVYDETKDMILEKLEPGYIIERHLKDGDMVLFNRQPSLHRMSMMAHEV 434
Query: 358 RVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRN 537
RVLP + +N C P DFDGD ++ ++ Q+ +R E L+ + +++ + G
Sbjct: 435 RVLPYKT-FRLNLCVCPPYNADFDGDEMNMHVFQTDESRAEAKSLMRVQEHILSPRFGGP 493
Query: 538 LLSLSQDSLTAAYML 582
++ D ++ AY+L
Sbjct: 494 IIGAIHDHISGAYLL 508
[214][TOP]
>UniRef100_B9AEP6 DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter smithii DSM
2375 RepID=B9AEP6_METSM
Length = 894
Score = 102 bits (255), Expect = 2e-20
Identities = 62/195 (31%), Positives = 107/195 (54%), Gaps = 8/195 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL--RLLEK 195
GKR + S RTV+ DP+++++E+GVP IA+ + V YVN N + E +
Sbjct: 315 GKRVNFSARTVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDEMRTYIENGPNVHPG 374
Query: 196 GHFKVCRKGRPVVLYKK------KDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSV 357
++ + GR + +Y + + L+ G ++ R L DGD VL NR PS+H+ SM++ V
Sbjct: 375 ANYVIRTDGRKIRVYDETKDMILEKLEPGYIIERHLKDGDMVLFNRQPSLHRMSMMAHEV 434
Query: 358 RVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRN 537
RVLP + +N C P DFDGD ++ ++ Q+ +R E L+ + +++ + G
Sbjct: 435 RVLPYKT-FRLNLCVCPPYNADFDGDEMNMHVFQTDESRAEAKSLMRVQEHILSPRFGGP 493
Query: 538 LLSLSQDSLTAAYML 582
++ D ++ AY+L
Sbjct: 494 IIGAIHDHISGAYLL 508
[215][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 102 bits (255), Expect = 2e-20
Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA++L V N L + E
Sbjct: 346 LMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEH 405
Query: 196 GHFKVCRKG---RPVVLYKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ L+ G + R + DGD V+ NR PS+H+ SM+
Sbjct: 406 PGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHR 465
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+RV+P S+ +N SP DFDGD ++ ++PQS R E+ E+ + +Q+++ QS +
Sbjct: 466 IRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNK 524
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 525 PVMGIVQDTL 534
[216][TOP]
>UniRef100_Q9NJK2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Polyxenus
fasciculatus RepID=Q9NJK2_9MYRI
Length = 751
Score = 102 bits (254), Expect = 2e-20
Identities = 68/197 (34%), Positives = 108/197 (54%), Gaps = 12/197 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L + ++GVP IA++L V N + + L+ +
Sbjct: 5 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQE-----LVRR 59
Query: 196 GH-------FKVCRKGRPVVLY---KKKDL--QIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G+ + + G + L K DL Q G + R + DGD V+ NR P++H+ S
Sbjct: 60 GNSQYPGAKYIIRDNGERIDLRFHPKPSDLHLQCGYRVERHVRDGDVVIFNRQPTLHKMS 119
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ +RV P S+ +N +P DFDGD ++ ++PQS+ R E+ EL + RQ+I
Sbjct: 120 MMGHHIRVFPWSTF-RMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIIT 178
Query: 520 GQSGRNLLSLSQDSLTA 570
QS R ++ + QD+LTA
Sbjct: 179 PQSNRPVMGIVQDTLTA 195
[217][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
RepID=Q9BMP3_MONBE
Length = 1743
Score = 102 bits (254), Expect = 2e-20
Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 7/193 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNREN--KKNLLDCCELRLL 189
++GKR D S RTV+ DP+LA+ ++GVP +A L V V N K N
Sbjct: 273 LMGKRVDFSARTVITPDPNLAIDQVGVPRTVAAKLTVPERVTNFNLNKMNQYVANGPTQH 332
Query: 190 EKGHFKVCRKGRPVVLY-----KKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L+ + LQ G ++ R L D D ++ NR P++H+ SM+
Sbjct: 333 PGARYIIQEDGTRIDLHIARSHSDRTLQPGFIVERHLQDNDVIIFNRQPTLHKMSMMGHR 392
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+VLP S+ +N SP DFDGD ++ ++PQS+ +R E+ E++ + + ++ QS R
Sbjct: 393 VKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSLGSRAEIEEIMMVHKNILTPQSNR 451
Query: 535 NLLSLSQDSLTAA 573
++ + QD+LT A
Sbjct: 452 PVMGIIQDTLTVA 464
[218][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
RepID=Q9BMP2_STYMT
Length = 1678
Score = 102 bits (254), Expect = 2e-20
Identities = 65/195 (33%), Positives = 108/195 (55%), Gaps = 12/195 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L L ++GVP QIA +L V V EN + +L+E+
Sbjct: 241 LMGKRVDFSARTVITPDPNLQLDQLGVPQQIALNLTVPETVTNENIDEMR-----KLIER 295
Query: 196 G-------HFKVCRKGRPVVLYKKKD-----LQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G + + R + L + ++ + G + R L D D V+ NR PS+H+ S
Sbjct: 296 GPNIWPGAKYIIRHDDRQIDLSQMRNRSEATIHPGFKVERHLRDNDYVIFNRQPSLHKMS 355
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
++ V+VLP S+ +N +P DFDGD ++ ++PQS E+ E++A+ Q+++
Sbjct: 356 LMGHRVKVLPFSTF-RLNLSVTTPYNADFDGDEMNMHVPQSYETMAEIKEIMAVPNQIVS 414
Query: 520 GQSGRNLLSLSQDSL 564
QS + ++ + QDSL
Sbjct: 415 PQSNKPVMGIVQDSL 429
[219][TOP]
>UniRef100_Q17085 DNA-directed RNA polymerase (Fragment) n=1 Tax=Artemia salina
RepID=Q17085_ARTSA
Length = 1341
Score = 102 bits (254), Expect = 2e-20
Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 12/197 (6%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L + ++GVP IA++L V N L + L+++
Sbjct: 266 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEMVTPLNHAKLTE-----LVQR 320
Query: 196 GH-------FKVCRKGRPVVL-YKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
G+ + + G + L Y K LQ G + R + DGD V+ NR P++H+ S
Sbjct: 321 GNSQYPGAKYIIRENGERIDLRYHPKTTDLHLQFGYKVERHIRDGDLVIFNRQPTLHKMS 380
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
M+ VRVLP S+ +N C +P DFDGD ++ ++ QS+ R EL + RQ+I
Sbjct: 381 MMGHRVRVLPWSTF-RMNLSCTTPYNADFDGDEMNLHVAQSLETRAELENIHITPRQIIT 439
Query: 520 GQSGRNLLSLSQDSLTA 570
Q+ R ++ + QD+L A
Sbjct: 440 PQANRPVMGIVQDTLCA 456
[220][TOP]
>UniRef100_Q0PPZ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lichinella
iodopulchra RepID=Q0PPZ6_9PEZI
Length = 1020
Score = 102 bits (254), Expect = 2e-20
Identities = 67/198 (33%), Positives = 104/198 (52%), Gaps = 9/198 (4%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA+ L V N L +R
Sbjct: 281 LMGKRVDFSSRTVITGDPNLSLDEVGVPISIAKILTYPETVTPYNIHKLHQL--VRNGPS 338
Query: 196 GH----FKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
GH + + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 339 GHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKESMMG 398
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
VRV+P S+ +N +P DFDGD ++ ++PQS R E+++L + +++ Q
Sbjct: 399 HRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEETRAEISQLCMVPLNIVSPQR 457
Query: 529 GRNLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 458 NGPLMGIVQDTLVGIYKI 475
[221][TOP]
>UniRef100_O96446 DNA-directed RNA polymerase n=1 Tax=Vairimorpha necatrix
RepID=O96446_9MICR
Length = 1605
Score = 102 bits (254), Expect = 2e-20
Identities = 64/195 (32%), Positives = 112/195 (57%), Gaps = 10/195 (5%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S R+V+ DP++++ E+GVP +IA+ + N L +L+
Sbjct: 311 LMGKRVDFSARSVITPDPNISVEEVGVPSEIAKIHTFPEIITPFNIDRLT-----KLVSN 365
Query: 196 G-------HFKVCRKGRPVVL-YKKKDLQI--GDLLYRPLTDGDKVLINRPPSIHQHSMI 345
G ++ + G+ + L + + D+++ G ++ R + DGD VL NR PS+H+ SM+
Sbjct: 366 GPNEYPGANYVIRNDGQRIDLNFNRGDIKLEEGYVVERHMQDGDVVLFNRQPSLHKMSMM 425
Query: 346 SLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQ 525
+ VRV+ +N C SP DFDGD ++ ++PQS ++ EL EL + +Q+++ Q
Sbjct: 426 AHFVRVME-GKTFRLNLSCVSPYNADFDGDEMNLHMPQSYNSKAELEELCLVSKQVLSPQ 484
Query: 526 SGRNLLSLSQDSLTA 570
S + ++ + QDSLTA
Sbjct: 485 SNKPVMGIVQDSLTA 499
[222][TOP]
>UniRef100_A5J2B6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vairimorpha necatrix
RepID=A5J2B6_9MICR
Length = 1255
Score = 102 bits (254), Expect = 2e-20
Identities = 64/195 (32%), Positives = 112/195 (57%), Gaps = 10/195 (5%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S R+V+ DP++++ E+GVP +IA+ + N L +L+
Sbjct: 311 LMGKRVDFSARSVITPDPNISVEEVGVPSEIAKIHTFPEIITPFNIDRLT-----KLVSN 365
Query: 196 G-------HFKVCRKGRPVVL-YKKKDLQI--GDLLYRPLTDGDKVLINRPPSIHQHSMI 345
G ++ + G+ + L + + D+++ G ++ R + DGD VL NR PS+H+ SM+
Sbjct: 366 GPNEYPGANYVIRNDGQRIDLNFNRGDIKLEEGYVVERHMQDGDVVLFNRQPSLHKMSMM 425
Query: 346 SLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQ 525
+ VRV+ +N C SP DFDGD ++ ++PQS ++ EL EL + +Q+++ Q
Sbjct: 426 AHFVRVME-GKTFRLNLSCVSPYNADFDGDEMNLHMPQSYNSKAELEELCLVSKQVLSPQ 484
Query: 526 SGRNLLSLSQDSLTA 570
S + ++ + QDSLTA
Sbjct: 485 SNKPVMGIVQDSLTA 499
[223][TOP]
>UniRef100_A5H287 DNA-directed RNA polymerase (Fragment) n=1 Tax=Xanthoparmelia
conspersa RepID=A5H287_9LECA
Length = 1000
Score = 102 bits (254), Expect = 2e-20
Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L + E
Sbjct: 268 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 327
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DG+ + NR PS H+ SM+
Sbjct: 328 PGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGEYIXFNRQPSXHKESMMGHR 387
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRVLP S+ +N +P DFDGD ++ ++PQS +R EL +L + R +++ Q
Sbjct: 388 VRVLPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSQESRAELQQLCLVPRNIVSPQKNA 446
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 447 PLMGIVQDTLCGIYKI 462
[224][TOP]
>UniRef100_A5E7R0 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E7R0_LODEL
Length = 1450
Score = 102 bits (254), Expect = 2e-20
Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC--------E 177
GKR D S RTV+ DP+L + E+ VP ++A+ L R NK+ L
Sbjct: 372 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKRKLQQLIINGPDHHPG 431
Query: 178 LRLLEKGHFKVCRKGRPVVLYK-KKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
++K + R R +K + LQ+GDL+ R + DGD VL NR PS+H+ S++S
Sbjct: 432 ANYVQKQNEPGKRNLRFGDRHKLARSLQVGDLVERHIEDGDVVLFNRQPSLHRLSILSHY 491
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +SG
Sbjct: 492 AKIRPWRT-FRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 550
Query: 535 NLLSLSQDSLTAAYML 582
+++ +QD +T +Y++
Sbjct: 551 PIIAATQDFITGSYLI 566
[225][TOP]
>UniRef100_A4YCQ9 DNA-directed RNA polymerase n=1 Tax=Metallosphaera sedula DSM 5348
RepID=A4YCQ9_METS5
Length = 886
Score = 102 bits (254), Expect = 2e-20
Identities = 68/197 (34%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK-- 195
GKR D S RTV+ DP++++ E+GVP +A+ L V V + N + + + +K
Sbjct: 321 GKRVDFSARTVISPDPNISIDEVGVPYDVAQILTVPEKVTKWNIERMRQYV-INGPDKWP 379
Query: 196 -GHFKVCRKGRPVVLYKKKD-------LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISL 351
++ V GR + L KD L ++ R L DGD V+ NR PS+H+ SM+
Sbjct: 380 GANYVVRPDGRRIDLRYVKDRKELAATLAPNFIVERHLVDGDIVIFNRQPSLHRISMMGH 439
Query: 352 SVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSG 531
VRVLP +N L C P DFDGD ++ ++PQS A E EL+ + R ++ + G
Sbjct: 440 KVRVLP-GRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAETKELMTVHRNILTPRYG 498
Query: 532 RNLLSLSQDSLTAAYML 582
++ +QD ++ AY+L
Sbjct: 499 GPIIGSAQDYISGAYLL 515
[226][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BD271
Length = 1749
Score = 102 bits (253), Expect = 3e-20
Identities = 68/190 (35%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA +L V N L + E
Sbjct: 345 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEH 404
Query: 196 GHFKVCRKG---RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R L D D VL NR PS+H+ SM++
Sbjct: 405 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHR 464
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++ QS +
Sbjct: 465 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNK 523
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 524 PVMGIVQDTL 533
[227][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 102 bits (253), Expect = 3e-20
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 14/199 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L + ++GVP IA ++ V N L + L+ +
Sbjct: 332 LMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQE-----LVRR 386
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G+ + G ++ D LQIG + R + DGD V+ NR P++H+
Sbjct: 387 GNSQY--PGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHK 444
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ VR+LP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + R +
Sbjct: 445 MSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMI 503
Query: 514 INGQSGRNLLSLSQDSLTA 570
+ QS R ++ + QD+LTA
Sbjct: 504 VTPQSNRPVMGIVQDTLTA 522
[228][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 102 bits (253), Expect = 3e-20
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 14/199 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L + ++GVP IA ++ V N L + L+ +
Sbjct: 352 LMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQE-----LVRR 406
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G+ + G ++ D LQIG + R + DGD V+ NR P++H+
Sbjct: 407 GNSQY--PGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHK 464
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ VR+LP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + R +
Sbjct: 465 MSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMI 523
Query: 514 INGQSGRNLLSLSQDSLTA 570
+ QS R ++ + QD+LTA
Sbjct: 524 VTPQSNRPVMGIVQDTLTA 542
[229][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
Length = 1706
Score = 102 bits (253), Expect = 3e-20
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 7/192 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDC-CELRLLE 192
++GKR D S RTV+ DP+L + ++GVP +A +L V + V N+ L +
Sbjct: 276 LMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPIRVTAFNQAELSALVANGPTMH 335
Query: 193 KGHFKVCRKG--RPVVLYKKKDLQI----GDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
G + R R + Y K ++ G ++ R L D D VL NR PS+H+ S++
Sbjct: 336 PGAKHIIRSDGTRIDLRYVKNKSELLLAHGWIVERHLRDDDIVLFNRQPSLHKMSIMGHK 395
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
+VL S+ +N C SP DFDGD ++ ++PQ +AAR E ++ R +++GQS R
Sbjct: 396 AKVLDWSTF-RLNLSCTSPYNADFDGDEMNLHVPQGLAARAEAELMMLSSRVIVSGQSNR 454
Query: 535 NLLSLSQDSLTA 570
++S+ QDSL A
Sbjct: 455 PVMSIVQDSLLA 466
[230][TOP]
>UniRef100_Q6FKG9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
RepID=Q6FKG9_CANGA
Length = 1459
Score = 102 bits (253), Expect = 3e-20
Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 14/201 (6%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGH 201
GKR D S RTV+ DP+L++ E+ VP +A+ L V R N K L +L++ G
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNIKKLR-----QLVQNGP 424
Query: 202 ---------FKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHS 339
K + R + Y + +LQ GD++ R L DGD VL NR PS+H+ S
Sbjct: 425 NVHPGANYLLKKNEEARRNLRYGDRQKLANNLQYGDVVERHLEDGDVVLFNRQPSLHRLS 484
Query: 340 MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 519
++S ++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+
Sbjct: 485 ILSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 543
Query: 520 GQSGRNLLSLSQDSLTAAYML 582
+SG +++ +QD +T +Y++
Sbjct: 544 PKSGEPIIAATQDFITGSYLI 564
[231][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 102 bits (253), Expect = 3e-20
Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA +L V N L + E
Sbjct: 345 LMGKRVDFSARTVITGDPNLELDQVGVPRSIARTLTYPEIVTPFNIHKLTEYVRNGPNEH 404
Query: 196 --GHFKVCRKGRPVVL-YKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L Y K+ LQ G + R L D D VL NR PS+H+ SM++
Sbjct: 405 PGAKYVIRDTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHR 464
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R EL++L + Q+++ QS +
Sbjct: 465 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVSPQSNK 523
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 524 PVMGIVQDTL 533
[232][TOP]
>UniRef100_Q0PQ03 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pertusaria dactylina
RepID=Q0PQ03_9LECA
Length = 1015
Score = 102 bits (253), Expect = 3e-20
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 334
Query: 196 --GHFKVCRKGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
+ + G + L K LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 335 PGAKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHR 394
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+++L + +++ Q
Sbjct: 395 VRVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLNIVSPQRNA 453
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 454 PLMGIVQDTLCGIYKI 469
[233][TOP]
>UniRef100_C5E245 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS
6340 RepID=C5E245_LACTC
Length = 1740
Score = 102 bits (253), Expect = 3e-20
Identities = 68/190 (35%), Positives = 103/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA +L V N L E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEH 399
Query: 196 GHFKVCRKG---RPVVLYKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R + D D VL NR PS+H+ SM++
Sbjct: 400 PGAKYIIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIIDEDPVLFNRQPSLHKMSMMAHR 459
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ +Q+++ QS +
Sbjct: 460 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQIVSAQSNK 518
Query: 535 NLLSLSQDSL 564
+ + QD+L
Sbjct: 519 PCMGIVQDTL 528
[234][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RSM9_DEBHA
Length = 1749
Score = 102 bits (253), Expect = 3e-20
Identities = 68/190 (35%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA +L V N L + E
Sbjct: 345 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEH 404
Query: 196 GHFKVCRKG---RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R L D D VL NR PS+H+ SM++
Sbjct: 405 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHR 464
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL+++ A+ Q+++ QS +
Sbjct: 465 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNK 523
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 524 PVMGIVQDTL 533
[235][TOP]
>UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
RepID=B0XMU6_ASPFC
Length = 1750
Score = 102 bits (253), Expect = 3e-20
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 7/200 (3%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L
Sbjct: 351 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANG 410
Query: 184 LLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLY-----RPLTDGDKVLINRPPSIHQHSM 342
E + V G + L + LLY R L DGD +L NR PS+H+ SM
Sbjct: 411 PNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESM 470
Query: 343 ISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLING 522
+ VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++
Sbjct: 471 MGHRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALVPLNIVSP 529
Query: 523 QSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y +
Sbjct: 530 QRNGPLMGIVQDTLCGIYKI 549
[236][TOP]
>UniRef100_A7TTU2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vanderwaltozyma
polyspora DSM 70294 RepID=A7TTU2_VANPO
Length = 1311
Score = 102 bits (253), Expect = 3e-20
Identities = 68/190 (35%), Positives = 103/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA++L V N L E
Sbjct: 22 LMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEH 81
Query: 196 GHFKVCRKG---RPVVLYKKK----DLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R + D D VL NR PS+H+ SM++
Sbjct: 82 PGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHR 141
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL++L A+ Q+++ QS +
Sbjct: 142 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPMQIVSPQSNK 200
Query: 535 NLLSLSQDSL 564
+ + QD+L
Sbjct: 201 PCMGIVQDTL 210
[237][TOP]
>UniRef100_A5H2F1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tornabea
scutellifera RepID=A5H2F1_9LECA
Length = 993
Score = 102 bits (253), Expect = 3e-20
Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 7/196 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L+L E+GVP IA +L V N L + E
Sbjct: 255 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 314
Query: 196 -GHFKVCRKG--RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
G V R G R + + ++ LQ G + R + DGD ++ NR PS+H+ SM+
Sbjct: 315 PGARYVIRDGGERIDLRFHRRAGDLVLQYGWKVERHIVDGDFIIFNRQPSLHKESMMGHR 374
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
VRV+P S+ +N SP DFDGD ++ ++PQS R E+N+L + +++ Q
Sbjct: 375 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNS 433
Query: 535 NLLSLSQDSLTAAYML 582
L+ + QD+L Y +
Sbjct: 434 PLMGIVQDTLCGIYKI 449
[238][TOP]
>UniRef100_A5DCV2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia
guilliermondii RepID=A5DCV2_PICGU
Length = 288
Score = 102 bits (253), Expect = 3e-20
Identities = 69/190 (36%), Positives = 103/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA +L V N L + E
Sbjct: 66 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEH 125
Query: 196 GHFKVCRKG---RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R L D D VL NR PS+H+ SM+
Sbjct: 126 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHR 185
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL+E+ A+ Q+++ QS +
Sbjct: 186 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNK 244
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 245 PVMGIVQDTL 254
[239][TOP]
>UniRef100_A1D1U9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D1U9_NEOFI
Length = 1750
Score = 102 bits (253), Expect = 3e-20
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 7/200 (3%)
Frame = +1
Query: 4 MKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELR 183
++ ++GKR D S RTV+ GDP+L+L E+GVP IA +L V N + L
Sbjct: 351 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANG 410
Query: 184 LLEK--GHFKVCRKGRPVVLYKKKDLQIGDLLY-----RPLTDGDKVLINRPPSIHQHSM 342
E + V G + L + LLY R L DGD +L NR PS+H+ SM
Sbjct: 411 PNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESM 470
Query: 343 ISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLING 522
+ VRV+P S+ +N +P DFDGD ++ ++PQS +R EL +L + +++
Sbjct: 471 MGHRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALVPLNIVSP 529
Query: 523 QSGRNLLSLSQDSLTAAYML 582
Q L+ + QD+L Y +
Sbjct: 530 QRNGPLMGIVQDTLCGIYKI 549
[240][TOP]
>UniRef100_P11512 DNA-directed RNA polymerase subunit A' n=1 Tax=Sulfolobus
acidocaldarius RepID=RPOA1_SULAC
Length = 880
Score = 102 bits (253), Expect = 3e-20
Identities = 69/197 (35%), Positives = 105/197 (53%), Gaps = 10/197 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK-- 195
GKR D S RTV+ DP+L++ E+G+P IA L V V N + + + +K
Sbjct: 315 GKRVDFSARTVISPDPNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYI-INGPDKWP 373
Query: 196 -GHFKVCRKGRPVVLYKKKD-------LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISL 351
++ + GR + L KD + G ++ R L DGD VL NR PS+H+ SM++
Sbjct: 374 GANYVIKPDGRRIDLRYVKDRKELASSITAGYVVERHLVDGDVVLFNRQPSLHRISMMAH 433
Query: 352 SVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSG 531
VRVLP +N L C P DFDGD ++ ++PQS A E EL+ + + +I + G
Sbjct: 434 KVRVLP-GRTFRLNLLDCPPYNADFDGDEMNLHVPQSEEAIAEARELMLVHKNIITPRYG 492
Query: 532 RNLLSLSQDSLTAAYML 582
++ QD ++ AY+L
Sbjct: 493 GPIIGGGQDYISGAYLL 509
[241][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
Tax=Pichia guilliermondii RepID=RPB1_PICGU
Length = 1579
Score = 102 bits (253), Expect = 3e-20
Identities = 69/190 (36%), Positives = 103/190 (54%), Gaps = 7/190 (3%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ GDP+L L ++GVP IA +L V N L + E
Sbjct: 344 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEH 403
Query: 196 GHFKVCRKG---RPVVLYKKKD----LQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLS 354
K + R + Y K+ LQ G + R L D D VL NR PS+H+ SM+
Sbjct: 404 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHR 463
Query: 355 VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 534
V+V+P S+ +N SP DFDGD ++ ++PQS R EL+E+ A+ Q+++ QS +
Sbjct: 464 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNK 522
Query: 535 NLLSLSQDSL 564
++ + QD+L
Sbjct: 523 PVMGIVQDTL 532
[242][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase
III largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 101 bits (252), Expect = 4e-20
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L++ ++GVP IA ++ + V N L + L+ +
Sbjct: 354 LMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQE-----LVRR 408
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G+ + G ++ D LQ G + R + DGD V+ NR P++H+
Sbjct: 409 GNSQY--PGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHK 466
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ VR+LP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + R +
Sbjct: 467 MSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMI 525
Query: 514 INGQSGRNLLSLSQDSLTA 570
+ QS R ++ + QD+LTA
Sbjct: 526 VTPQSNRPVMGIVQDTLTA 544
[243][TOP]
>UniRef100_UPI00015B5AFA PREDICTED: hypothetical protein n=1 Tax=Nasonia vitripennis
RepID=UPI00015B5AFA
Length = 1372
Score = 101 bits (252), Expect = 4e-20
Identities = 71/203 (34%), Positives = 110/203 (54%), Gaps = 16/203 (7%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCEL--RLLEK 195
GKR D S RTV+ DP+L + ++GVP +A+ L Y R NK N+ EL RL++
Sbjct: 347 GKRVDFSSRTVISPDPNLRIEQVGVPIHVAKIL---TYPERVNKCNI----ELMRRLVKN 399
Query: 196 G--------HFKVCR-KGRPVVLYKKK-----DLQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G ++ + K R + Y + DLQ GD++ R L DGD VL NR PS+H+
Sbjct: 400 GPDVHPGANFIEIGKNKERRFLRYGNRQKMAQDLQYGDIVERHLHDGDVVLFNRQPSLHK 459
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
S+++ +VL + N C+P DFDGD ++ ++PQ+ AR E L+ L
Sbjct: 460 LSIMAHKAKVLE-NRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNL 518
Query: 514 INGQSGRNLLSLSQDSLTAAYML 582
+ ++G L++ +QD +T Y+L
Sbjct: 519 VTPRNGELLIAATQDFITGGYLL 541
[244][TOP]
>UniRef100_UPI000151B46E DNA-directed RNA polymerase III largest subunit n=1 Tax=Pichia
guilliermondii ATCC 6260 RepID=UPI000151B46E
Length = 1379
Score = 101 bits (252), Expect = 4e-20
Identities = 63/198 (31%), Positives = 105/198 (53%), Gaps = 11/198 (5%)
Frame = +1
Query: 22 GKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCC--------- 174
GKR D S RTV+ DP+L + E+ VP ++A+ L R N+K L
Sbjct: 297 GKRVDFSARTVISPDPNLRIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQLILNGPDVHPG 356
Query: 175 --ELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMIS 348
+ + + R G V L K+L +GD++ R + DGD VL NR PS+H+ S++S
Sbjct: 357 ANYVMKQNEAAKRNLRFGDKVKL--AKNLHVGDVVERHIEDGDVVLFNRQPSLHRLSILS 414
Query: 349 LSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQS 528
++ P + +N C+P DFDGD ++ ++PQ+ AR E L+ + L+ +S
Sbjct: 415 HYAKIRPWRT-FRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKS 473
Query: 529 GRNLLSLSQDSLTAAYML 582
G +++ +QD +T +Y++
Sbjct: 474 GEPIIAATQDFITGSYLI 491
[245][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1
Tax=Monodelphis domestica RepID=UPI0000F2BF13
Length = 1932
Score = 101 bits (252), Expect = 4e-20
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L++ ++GVP IA ++ + V N L + L+ +
Sbjct: 354 LMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQE-----LVRR 408
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G+ + G ++ D LQ G + R + DGD V+ NR P++H+
Sbjct: 409 GNSQY--PGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHK 466
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ VR+LP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + R +
Sbjct: 467 MSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMI 525
Query: 514 INGQSGRNLLSLSQDSLTA 570
+ QS R ++ + QD+LTA
Sbjct: 526 VTPQSNRPVMGIVQDTLTA 544
[246][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1
Tax=Monodelphis domestica RepID=UPI0000F2BF12
Length = 1970
Score = 101 bits (252), Expect = 4e-20
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L++ ++GVP IA ++ + V N L + L+ +
Sbjct: 354 LMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQE-----LVRR 408
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G+ + G ++ D LQ G + R + DGD V+ NR P++H+
Sbjct: 409 GNSQY--PGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHK 466
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ VR+LP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + R +
Sbjct: 467 MSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMI 525
Query: 514 INGQSGRNLLSLSQDSLTA 570
+ QS R ++ + QD+LTA
Sbjct: 526 VTPQSNRPVMGIVQDTLTA 544
[247][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 101 bits (252), Expect = 4e-20
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L++ ++GVP IA ++ + V N L + L+ +
Sbjct: 354 LMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQE-----LVRR 408
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G+ + G ++ D LQ G + R + DGD V+ NR P++H+
Sbjct: 409 GNSQY--PGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHK 466
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ VR+LP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + R +
Sbjct: 467 MSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMI 525
Query: 514 INGQSGRNLLSLSQDSLTA 570
+ QS R ++ + QD+LTA
Sbjct: 526 VTPQSNRPVMGIVQDTLTA 544
[248][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Pan troglodytes
RepID=UPI0000E24648
Length = 1913
Score = 101 bits (252), Expect = 4e-20
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L++ ++GVP IA ++ + V N L + L+ +
Sbjct: 354 LMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQE-----LVRR 408
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G+ + G ++ D LQ G + R + DGD V+ NR P++H+
Sbjct: 409 GNSQY--PGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHK 466
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ VR+LP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + R +
Sbjct: 467 MSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMI 525
Query: 514 INGQSGRNLLSLSQDSLTA 570
+ QS R ++ + QD+LTA
Sbjct: 526 VTPQSNRPVMGIVQDTLTA 544
[249][TOP]
>UniRef100_UPI0000D9E16B PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Macaca mulatta
RepID=UPI0000D9E16B
Length = 1193
Score = 101 bits (252), Expect = 4e-20
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L++ ++GVP IA ++ + V N L + L+ +
Sbjct: 354 LMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQE-----LVRR 408
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G+ + G ++ D LQ G + R + DGD V+ NR P++H+
Sbjct: 409 GNSQY--PGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHK 466
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ VR+LP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + R +
Sbjct: 467 MSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMI 525
Query: 514 INGQSGRNLLSLSQDSLTA 570
+ QS R ++ + QD+LTA
Sbjct: 526 VTPQSNRPVMGIVQDTLTA 544
[250][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 101 bits (252), Expect = 4e-20
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Frame = +1
Query: 16 VLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEK 195
++GKR D S RTV+ DP+L++ ++GVP IA ++ + V N L + L+ +
Sbjct: 354 LMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQE-----LVRR 408
Query: 196 GHFKVCRKGRPVVLYKKKD--------------LQIGDLLYRPLTDGDKVLINRPPSIHQ 333
G+ + G ++ D LQ G + R + DGD V+ NR P++H+
Sbjct: 409 GNSQY--PGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHK 466
Query: 334 HSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQL 513
SM+ VR+LP S+ +N +P DFDGD ++ ++PQS+ R E+ EL + R +
Sbjct: 467 MSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMI 525
Query: 514 INGQSGRNLLSLSQDSLTA 570
+ QS R ++ + QD+LTA
Sbjct: 526 VTPQSNRPVMGIVQDTLTA 544