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[1][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 268 bits (684), Expect = 2e-70
Identities = 132/153 (86%), Positives = 148/153 (96%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKEARKQLYSENGRHP++EEVAEATGLSMKRL+AVLLTPKAPRSL+QKIGINQNLKPS
Sbjct: 426 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPS 485
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EVIADP+AETAEE LIKQFM++DLEKVL+SLNPREKQVIRWR+G++DGR KTL EIGE++
Sbjct: 486 EVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELM 545
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
GVSRERIR IESCAFRKLKN++R +HLQQYLVS
Sbjct: 546 GVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578
[2][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 268 bits (684), Expect = 2e-70
Identities = 132/153 (86%), Positives = 148/153 (96%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKEARKQLYSENGRHP++EEVAEATGLSMKRL+AVLLTPKAPRSL+QKIGINQNLKPS
Sbjct: 83 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPS 142
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EVIADP+AETAEE LIKQFM++DLEKVL+SLNPREKQVIRWR+G++DGR KTL EIGE++
Sbjct: 143 EVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELM 202
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
GVSRERIR IESCAFRKLKN++R +HLQQYLVS
Sbjct: 203 GVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 235
[3][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 256 bits (655), Expect = 5e-67
Identities = 127/153 (83%), Positives = 144/153 (94%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKEARKQLYSENGRHPDDEEVAEA GLSMKRLSAVLLTPKAPRSL+QKIG+N +LKPS
Sbjct: 417 YRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPS 476
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EVIADPEAETAEE L+KQFMK+DLEKVL++LNPRE QV+RWRFG++DGRMKTL EIGE++
Sbjct: 477 EVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIM 536
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
GVSRERIR IES AFRKLKN+KR + L+QYL++
Sbjct: 537 GVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569
[4][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 252 bits (644), Expect = 9e-66
Identities = 125/155 (80%), Positives = 142/155 (91%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKEARKQLYSE G+HP +EE+AEATGLSMKRL AVLL+PK PRSL+QKIG+NQNLKPS
Sbjct: 418 YRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPS 477
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EVIADPEA T+E+ LIK+FM++DL+KVLDSL REKQVIRWRFGM+DGRMKTL EIGEM+
Sbjct: 478 EVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMM 537
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVSPS 41
GVSRER+R IES AFRKLKN+KRN HLQQYLV+ S
Sbjct: 538 GVSRERVRQIESSAFRKLKNKKRNNHLQQYLVAQS 572
[5][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 251 bits (642), Expect = 1e-65
Identities = 125/155 (80%), Positives = 141/155 (90%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKEARKQLYSE G+HP +EE+AEATGLSMKRL AVLL+PK PRSL+QKIG+NQNLKPS
Sbjct: 418 YRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPS 477
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EVIADPEA T E+ LIK+FM++DL+KVLDSL REKQVIRWRFGM+DGRMKTL EIGEM+
Sbjct: 478 EVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMM 537
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVSPS 41
GVSRER+R IES AFRKLKN+KRN HLQQYLV+ S
Sbjct: 538 GVSRERVRQIESSAFRKLKNKKRNNHLQQYLVAQS 572
[6][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 251 bits (640), Expect = 3e-65
Identities = 124/155 (80%), Positives = 142/155 (91%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKEARKQLYSE G+HP +EE+AEATGLSMKRL AVLL+PK PRSL++KIG+NQNLKPS
Sbjct: 420 YRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPS 479
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EVIADPEA T+E+ LIK+FM++DL+KVLDSL REKQVIRWRFGM+DGRMKTL EIGEM+
Sbjct: 480 EVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMM 539
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVSPS 41
GVSRER+R IES AFRKLKN+KRN HLQQYLV+ S
Sbjct: 540 GVSRERVRQIESSAFRKLKNKKRNNHLQQYLVAQS 574
[7][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 246 bits (628), Expect = 6e-64
Identities = 123/153 (80%), Positives = 139/153 (90%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKEARKQ YSENGRHPDD+EVAEATGLSMKRLSAVLLTPKAPRSL+QK+G N +LK S
Sbjct: 412 YRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLS 471
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EV ADPEAETAE+ L+K+FMKKDLE+VL+SL+PRE QVIRWRFGM+DGRMKTL EIGE++
Sbjct: 472 EVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELM 531
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
GVSRERIR IE AFRKLKN+ R + L+QYLVS
Sbjct: 532 GVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 564
[8][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 245 bits (626), Expect = 1e-63
Identities = 122/153 (79%), Positives = 140/153 (91%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKEARKQLYSE G+ P +EEVAEATGLSMKRL AVLL+PK PRSL+QKIGIN NLKPS
Sbjct: 418 YRVKEARKQLYSETGKQPKNEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPS 477
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EVIADPEAET+E+ L+KQFM++DL+KVLDSL+ REKQVIRWRFGM+DGRMKTL EIGE +
Sbjct: 478 EVIADPEAETSEDILMKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETM 537
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
GVSRER+R I++ AFRKLKN+KRN HLQQYLV+
Sbjct: 538 GVSRERVRQIDTSAFRKLKNKKRNSHLQQYLVA 570
[9][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 241 bits (614), Expect = 3e-62
Identities = 119/153 (77%), Positives = 137/153 (89%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKEARKQLYSENGRHPDD+EVAEA GLSMKRLSAVLLTPKAPRSL+QK+G N +LK S
Sbjct: 415 YRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLS 474
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EV ADPEAETAE+ L+K+FMKKDL KVL SL+PRE QV+RWRFGM+DGRMKTL EIGE++
Sbjct: 475 EVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELM 534
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
GVSRER+R IE AFRKLKN+ R + L+QY+V+
Sbjct: 535 GVSRERVRQIELSAFRKLKNKNRTKQLRQYMVA 567
[10][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 240 bits (612), Expect = 4e-62
Identities = 119/151 (78%), Positives = 139/151 (92%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKEARKQL SENG+ P++EEVAEATGLSMKRL+AVL+TPKAPRSL+QKIG N NLKPS
Sbjct: 423 YRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPS 482
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EVIADPEAETAE+ L KQFM++DLEKVLD+L+ REKQVIRWRFG++DGRMKTL EIGE++
Sbjct: 483 EVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELM 542
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
GVSRERIR IES AFRKL+N+K+ +LQQY+
Sbjct: 543 GVSRERIRQIESSAFRKLQNKKKTINLQQYM 573
[11][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 148 bits (374), Expect = 2e-34
Identities = 80/153 (52%), Positives = 108/153 (70%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKE K+L + R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++
Sbjct: 409 YRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQ 467
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EV ADP AETAEE L + MK+D+ K LD+L RE+QV+ RFG++DGR++TL EIG +
Sbjct: 468 EVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTM 527
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
GVSRERIR IES AFRKL+++KR L+ YLV+
Sbjct: 528 GVSRERIRQIESAAFRKLRSKKRVNALKDYLVT 560
[12][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 148 bits (373), Expect = 2e-34
Identities = 80/152 (52%), Positives = 107/152 (70%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKE K+L + R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++
Sbjct: 409 YRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQ 467
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EV ADP AETAEE L + MK+D+ K LD+L RE+QV+ RFG++DGR++TL EIG +
Sbjct: 468 EVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTM 527
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLV 50
GVSRERIR IES AFRKL+++KR L+ YLV
Sbjct: 528 GVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
[13][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 148 bits (373), Expect = 2e-34
Identities = 80/152 (52%), Positives = 107/152 (70%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKE K+L + R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++
Sbjct: 409 YRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQ 467
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EV ADP AETAEE L + MK+D+ K LD+L RE+QV+ RFG++DGR++TL EIG +
Sbjct: 468 EVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTM 527
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLV 50
GVSRERIR IES AFRKL+++KR L+ YLV
Sbjct: 528 GVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
[14][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
bicolor RepID=C6JRK5_SORBI
Length = 238
Score = 148 bits (373), Expect = 2e-34
Identities = 81/152 (53%), Positives = 108/152 (71%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKE K+L + R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++
Sbjct: 83 YRVKECTKRLRRKLRRRPTNEEIALDTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQ 141
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EV ADP AETAEE L + MKKD+ K LD+L REKQV+ RFG++D R++TL EIG ++
Sbjct: 142 EVTADPSAETAEEMLNRMSMKKDVHKALDTLTTREKQVVVLRFGLEDDRIRTLQEIGNIM 201
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLV 50
GVSRERIR IES AFRKL+++KR + L+ YLV
Sbjct: 202 GVSRERIRQIESGAFRKLRSKKRVKALKDYLV 233
[15][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 148 bits (373), Expect = 2e-34
Identities = 80/152 (52%), Positives = 107/152 (70%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKE K+L + R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++
Sbjct: 408 YRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQ 466
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EV ADP AETAEE L + MK+D+ K LD+L RE+QV+ RFG++DGR++TL EIG +
Sbjct: 467 EVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTM 526
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLV 50
GVSRERIR IES AFRKL+++KR L+ YLV
Sbjct: 527 GVSRERIRQIESAAFRKLRSKKRVNALKDYLV 558
[16][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 147 bits (372), Expect = 3e-34
Identities = 80/152 (52%), Positives = 108/152 (71%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
YRVKE K+L + R P +EE+A TG+ +KR+ A + PK SL+ KIG + ++
Sbjct: 384 YRVKECTKRLRRKLRRRPTNEEIAVDTGIPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQ 442
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
EV ADP AETAEE L + MKKD+ LD+L REKQV+ RFG++DGR++TL EIG ++
Sbjct: 443 EVTADPSAETAEEMLNRMSMKKDVHMALDTLTTREKQVVVLRFGLEDGRIRTLQEIGNIM 502
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLV 50
GVSRERIR IES AFRKL+++K+ + L+ YLV
Sbjct: 503 GVSRERIRQIESGAFRKLRSKKKVKALKDYLV 534
[17][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 146 bits (369), Expect = 7e-34
Identities = 75/150 (50%), Positives = 105/150 (70%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
RVKE R++L + R P +EE+A TG+ ++R+ A + PK SL K+G ++ E
Sbjct: 386 RVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQE 444
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+ D ETAEE L + MK+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++G
Sbjct: 445 ITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMG 504
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
VSRERIR IE AFRKL+ +K+ Q LQ YL
Sbjct: 505 VSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
[18][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 146 bits (369), Expect = 7e-34
Identities = 75/150 (50%), Positives = 105/150 (70%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
RVKE R++L + R P +EE+A TG+ ++R+ A + PK SL K+G ++ E
Sbjct: 189 RVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQE 247
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+ D ETAEE L + MK+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++G
Sbjct: 248 ITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMG 307
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
VSRERIR IE AFRKL+ +K+ Q LQ YL
Sbjct: 308 VSRERIRQIELVAFRKLRGRKKVQSLQHYL 337
[19][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 146 bits (369), Expect = 7e-34
Identities = 75/150 (50%), Positives = 105/150 (70%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
RVKE R++L + R P +EE+A TG+ ++R+ A + PK SL K+G ++ E
Sbjct: 343 RVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQE 401
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+ D ETAEE L + MK+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++G
Sbjct: 402 ITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMG 461
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
VSRERIR IE AFRKL+ +K+ Q LQ YL
Sbjct: 462 VSRERIRQIELVAFRKLRGRKKVQSLQHYL 491
[20][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 146 bits (369), Expect = 7e-34
Identities = 75/150 (50%), Positives = 105/150 (70%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
RVKE R++L + R P +EE+A TG+ ++R+ A + PK SL K+G ++ E
Sbjct: 386 RVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQE 444
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+ D ETAEE L + MK+D+++ LD L+PRE+QVIR+RFGMDDGR++TL +IG ++G
Sbjct: 445 ITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMG 504
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
VSRERIR IE AFRKL+ +K+ Q LQ YL
Sbjct: 505 VSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
[21][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 145 bits (366), Expect = 1e-33
Identities = 70/150 (46%), Positives = 110/150 (73%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ +A++ L E+GR +EEVAE GL++++L +V+ + KAP S+E+ IG + + E
Sbjct: 423 RINKAKRMLVQEHGREARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGE 482
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
++AD + ++ E+ ++KQ M++D+E VL +LNPRE++V+R RFG+DDGR KTL EIG++
Sbjct: 483 LVADTDVDSPEDAIVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFK 542
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL+ RN L++YL
Sbjct: 543 VTRERIRQIEAKAMRKLRQPSRNSILREYL 572
[22][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 144 bits (364), Expect = 3e-33
Identities = 73/150 (48%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R++ A + LY E+ R P EEVAE G+SM RL V + P SL++ +G + + K SE
Sbjct: 344 RIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSE 403
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
++AD +E+ E + K+ KKDL++VLD+L REKQV+R R+G+DDGRMK+L E+GE
Sbjct: 404 IVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFS 463
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
+SRER+R IE A RKL+ R QHL+ YL
Sbjct: 464 LSRERVRQIEMKAMRKLRQNHRTQHLKHYL 493
[23][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 144 bits (364), Expect = 3e-33
Identities = 73/150 (48%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R++ A + LY E+ R P EEVAE G+SM RL V + P SL++ +G + + K SE
Sbjct: 441 RIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSE 500
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
++AD +E+ E + K+ KKDL++VLD+L REKQV+R R+G+DDGRMK+L E+GE
Sbjct: 501 IVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFS 560
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
+SRER+R IE A RKL+ R QHL+ YL
Sbjct: 561 LSRERVRQIEMKAMRKLRQNHRTQHLKHYL 590
[24][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 144 bits (362), Expect = 4e-33
Identities = 70/150 (46%), Positives = 108/150 (72%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ +A+K L E+GR P DEEVAE G+S+++L ++ + K P S+++ IG ++ E
Sbjct: 437 RINKAKKMLIQEHGRQPRDEEVAELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGE 496
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+IAD + E+ E+ LI+Q +K+D++ VL +LNPRE++V+R RFG+DDG+ +TL EIG +
Sbjct: 497 MIADKDVESPEDDLIRQVLKQDVDGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFK 556
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL+ RN L++YL
Sbjct: 557 VTRERIRQIEAKAMRKLRQPSRNGVLREYL 586
[25][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 136 bits (343), Expect = 7e-31
Identities = 73/150 (48%), Positives = 104/150 (69%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
RVKE ++L E R P +EE+A TG++++R+ A + PK S K+G ++ E
Sbjct: 373 RVKECCRRLGRELKRLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQE 431
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
++ D AETAEE L + MKKD+ LDSL+PR+KQV+R+RFG++ GR +TL +IG+++G
Sbjct: 432 IMPDTSAETAEETLHRWLMKKDVNTALDSLSPRKKQVMRYRFGIEGGRARTLHDIGQLMG 491
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
VSRERIR IE AFRKL+++ R Q LQ YL
Sbjct: 492 VSRERIRQIELGAFRKLRSKNRLQSLQHYL 521
[26][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 135 bits (339), Expect = 2e-30
Identities = 73/150 (48%), Positives = 104/150 (69%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
RVKE ++L E R P +EE+A TG++++R+ A + PK S K+G ++ E
Sbjct: 374 RVKECCRRLRRELKRLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQE 432
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
++ D AETAEE L + MKKD+ L+SL+PREK V+R+RFG++ GR +TL +IG+++G
Sbjct: 433 IMPDTSAETAEEVLHRWLMKKDVNTALESLSPREKLVMRYRFGIEGGRPRTLHDIGQIMG 492
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
VSRERIR IE AFRKL+++KR Q LQ YL
Sbjct: 493 VSRERIRQIELGAFRKLRSKKRVQSLQHYL 522
[27][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 132 bits (332), Expect = 1e-29
Identities = 67/150 (44%), Positives = 104/150 (69%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 240 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 299
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+Q+ K +++DLEKVLDSL+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 300 FI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 358
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 359 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 388
[28][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 132 bits (332), Expect = 1e-29
Identities = 67/150 (44%), Positives = 104/150 (69%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 242 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 301
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+Q+ K +++DLEKVLDSL+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 302 FI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 360
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 361 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 390
[29][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 132 bits (332), Expect = 1e-29
Identities = 67/150 (44%), Positives = 104/150 (69%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 241 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 300
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+Q+ K +++DLEKVLDSL+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 301 FI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 359
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 360 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
[30][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 129 bits (325), Expect = 8e-29
Identities = 65/150 (43%), Positives = 104/150 (69%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A+ +++++L + + + P SLE IG ++ + +
Sbjct: 231 RIKKTTKILSQELGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 290
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+Q+ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 291 FI-EADGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 349
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 350 VTRERIRQIEAKALRKLRHPNRNSILKEYI 379
[31][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 129 bits (324), Expect = 1e-28
Identities = 65/150 (43%), Positives = 103/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ KQL E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 255 RIKKVTKQLSQELGRRPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 314
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + E ET EE++ K +++DLE VL++L PRE+ V++ R+G+DDGRMKTL EIG++
Sbjct: 315 FI-ESEGETPEERVAKVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFN 373
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 374 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 403
[32][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 129 bits (324), Expect = 1e-28
Identities = 65/150 (43%), Positives = 103/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 238 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 297
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+Q+ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 298 FI-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 356
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 357 VTRERIRQIEAKALRKLRHPNRNSILKEYI 386
[33][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 129 bits (324), Expect = 1e-28
Identities = 65/150 (43%), Positives = 103/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 242 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 301
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+Q+ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 302 FI-ESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 360
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 361 VTRERIRQIEAKALRKLRHPNRNSILKEYI 390
[34][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 128 bits (321), Expect = 2e-28
Identities = 64/150 (42%), Positives = 104/150 (69%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A + +++++L + + + P SLE IG ++ + +
Sbjct: 237 RIKKTTKLLSQEMGRKPTEEEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 296
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VL+SL+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 297 FI-ESDGETPEDEVSKNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 355
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 356 VTRERIRQIEAKALRKLRHPNRNSILKEYI 385
[35][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 127 bits (320), Expect = 3e-28
Identities = 65/150 (43%), Positives = 103/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE +++++L + + + P SLE IG ++ + +
Sbjct: 226 RIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 285
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+Q+ K +++DLE VLD+L+ RE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 286 FI-EADGETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFN 344
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 345 VTRERIRQIEAKALRKLRHPNRNSILKEYI 374
[36][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 127 bits (320), Expect = 3e-28
Identities = 64/150 (42%), Positives = 103/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 222 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 281
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+Q+ K +++DLE VLD+L+PRE+ V++ R+G+DDGRMKTL EIG++
Sbjct: 282 FI-ESDGETPEDQVSKSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFN 340
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 341 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 370
[37][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 127 bits (319), Expect = 4e-28
Identities = 64/150 (42%), Positives = 103/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+AE +++++L + + + P SLE IG ++ + +
Sbjct: 276 RIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 335
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 336 FI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 394
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 395 VTRERIRQIEAKALRKLRHPNRNSILKEYI 424
[38][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 125 bits (315), Expect = 1e-27
Identities = 63/150 (42%), Positives = 103/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A+ +++++L + + + P SLE IG ++ + +
Sbjct: 269 RIKKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 328
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+Q+ K +++DLE VL +L+PRE+ V++ R+G+DDGRMKTL EIG++
Sbjct: 329 FI-ESDGETPEDQVSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFN 387
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 388 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 417
[39][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 125 bits (315), Expect = 1e-27
Identities = 63/150 (42%), Positives = 103/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 251 RIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 310
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VL++L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 311 FI-EADGETPEDKVAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFN 369
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 370 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 399
[40][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 125 bits (315), Expect = 1e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 250 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 309
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 310 FI-EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFN 368
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 369 VTRERIRQIEAKALRKLRHPNRNSILKEYI 398
[41][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 125 bits (315), Expect = 1e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 250 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 309
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 310 FI-EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFN 368
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 369 VTRERIRQIEAKALRKLRHPNRNSILKEYI 398
[42][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 125 bits (314), Expect = 2e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 255 RIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 314
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 315 FI-ESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 373
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 374 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 403
[43][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 125 bits (313), Expect = 2e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 267 RIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 326
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 327 FI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 385
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 386 VTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[44][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 125 bits (313), Expect = 2e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 265 RIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 324
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 325 FI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 383
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 384 VTRERIRQIEAKALRKLRHPNRNSILKEYI 413
[45][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 125 bits (313), Expect = 2e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 267 RIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 326
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 327 FI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 385
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 386 VTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[46][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 124 bits (312), Expect = 3e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 229 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 288
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+Q+ K +++DLE VL +L+PRE+ V++ R+G+DDGRMKTL EIG++
Sbjct: 289 FI-ESDGETPEDQVSKNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFN 347
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 348 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 377
[47][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 124 bits (312), Expect = 3e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 227 RIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 286
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 287 FI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 345
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 346 VTRERIRQIEAKALRKLRHPNRNSILKEYI 375
[48][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 124 bits (312), Expect = 3e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 267 RIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 326
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 327 FI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 385
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 386 VTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[49][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 124 bits (312), Expect = 3e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 228 RIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 287
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 288 FI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 346
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 347 VTRERIRQIEAKALRKLRHPNRNSILKEYI 376
[50][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 124 bits (312), Expect = 3e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 267 RIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 326
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 327 FI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 385
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 386 VTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[51][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 124 bits (312), Expect = 3e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 267 RIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 326
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 327 FI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 385
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 386 VTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[52][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 124 bits (312), Expect = 3e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 267 RIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 326
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 327 FI-EADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 385
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 386 VTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[53][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 123 bits (309), Expect = 6e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 354 RIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 413
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 414 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 472
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 473 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 502
[54][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 312 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 371
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 372 FI-ESDTENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFE 430
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 431 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 460
[55][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 322 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 381
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 382 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 440
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 441 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 470
[56][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 302 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 361
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 362 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 420
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 421 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 450
[57][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 286 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 345
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 346 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 404
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 405 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 434
[58][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 291 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 350
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 351 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 409
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 410 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 439
[59][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 301 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 360
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 361 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 419
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 420 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 449
[60][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 295 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 354
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 355 FI-ESDTENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFE 413
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 414 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 443
[61][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 302 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 361
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 362 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 420
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 421 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 450
[62][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 330 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 389
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 390 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 448
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 449 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 478
[63][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 309 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 368
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 369 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 427
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 428 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 457
[64][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 298 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 357
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 358 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 416
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 417 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 446
[65][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 307 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 366
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 367 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 425
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 426 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 455
[66][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 320 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 379
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 380 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 438
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 439 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 468
[67][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 123 bits (308), Expect = 8e-27
Identities = 67/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-INQNLKPS 326
R+ + ++ NGR P EE+A +S+++++ + +AP SL Q +G N+
Sbjct: 364 RISKMEQKFALYNGRPPTLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIE 423
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
+ + D AE E+ K +K+DLE VL++LNPRE+ V+R R+G+DDGR+KTL EIG +
Sbjct: 424 DTLIDANAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVF 483
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVSPS*P 35
V+RERIR IE+ A RKLK RNQ LQ+Y V + P
Sbjct: 484 SVTRERIRQIEAKALRKLKQPSRNQVLQEYFVDDAPP 520
[68][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 123 bits (308), Expect = 8e-27
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 311 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 370
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 371 FI-EADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 429
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 430 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 459
[69][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 122 bits (307), Expect = 1e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 269 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 328
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 329 FI-EADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 387
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 388 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 417
[70][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 122 bits (307), Expect = 1e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 269 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 328
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 329 FI-EADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 387
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 388 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 417
[71][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 122 bits (307), Expect = 1e-26
Identities = 62/150 (41%), Positives = 101/150 (67%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E R P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 230 RIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 289
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+++ K +++DLE VLD+L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 290 FI-EADGENPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 348
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 349 VTRERIRQIEAKALRKLRHPNRNSILKEYI 378
[72][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 122 bits (306), Expect = 1e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 247 RIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 306
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 307 FI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFD 365
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 366 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 395
[73][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 122 bits (306), Expect = 1e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 244 RIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 303
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 304 FI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFD 362
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 363 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[74][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 122 bits (306), Expect = 1e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 244 RIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 303
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 304 FI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFD 362
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 363 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[75][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 122 bits (306), Expect = 1e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 245 RIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 304
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 305 FI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFD 363
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 364 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 393
[76][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 122 bits (306), Expect = 1e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 248 RIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 307
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 308 FI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFD 366
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 367 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 396
[77][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 122 bits (306), Expect = 1e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 245 RIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 304
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 305 FI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFD 363
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 364 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 393
[78][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 122 bits (306), Expect = 1e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 244 RIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 303
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E E+ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 304 FI-EADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFD 362
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 363 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[79][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 122 bits (305), Expect = 2e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 289 RIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 348
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + ++E E + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 349 FI-ESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 407
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 408 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 437
[80][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 122 bits (305), Expect = 2e-26
Identities = 63/150 (42%), Positives = 102/150 (68%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 276 RIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 335
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + ++E E + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 336 FI-ESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 394
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 395 VTRERIRQIEAKALRKLRHPNRNGVLKEYI 424
[81][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 121 bits (304), Expect = 2e-26
Identities = 61/150 (40%), Positives = 95/150 (63%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + +QL + GR P EE+AE +++++++ + P SL Q + + + E
Sbjct: 420 RMSKVERQLVMKYGRDPTTEEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSRTVEE 479
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+ D AE ++ K +K+DLE VL++L+PRE+ V+R R+GMDDGR+KTL EIG +
Sbjct: 480 TLVDDHAEHPDDATGKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFS 539
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL+ RN L++YL
Sbjct: 540 VTRERIRQIEAKALRKLRQPSRNGILREYL 569
[82][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 120 bits (302), Expect = 4e-26
Identities = 61/150 (40%), Positives = 101/150 (67%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+A +++++L + + + P SLE IG ++ + +
Sbjct: 254 RIKKVTKLLSQELGRKPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 313
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + ET E+++ K +++DLE VL++L RE+ V++ R+G+DDGRMKTL EIG++
Sbjct: 314 FI-ESDGETPEDRVAKVLLREDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFN 372
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ RN L++Y+
Sbjct: 373 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 402
[83][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 120 bits (302), Expect = 4e-26
Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG-INQNLKPS 326
R+ + ++ NGR+P EE+A +S ++++ + +AP SL Q +G N+
Sbjct: 178 RISKMEQKFALHNGRNPTTEEIAAEMDMSAEKITQIKKAAQAPVSLAQTMGGDNKGRTVE 237
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
+ + D AE E+ K +K+DLE VL++LNPRE+ V+R R+G+DDGR+KTL EIG +
Sbjct: 238 DTLVDVTAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVF 297
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQY 56
V+RERIR IE+ A RKLK RN LQ+Y
Sbjct: 298 SVTRERIRQIEAKALRKLKQPSRNSILQEY 327
[84][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 119 bits (299), Expect = 9e-26
Identities = 60/144 (41%), Positives = 92/144 (63%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+AE G+S +++ ++ + P SLE IG ++ + I D E
Sbjct: 225 RQLVQELGREPTPEEIAEKMGISPEKVREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQE 284
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A+ E+ +++ L +VL SL PRE++V+R RFG+DDGR +TL E+G+ GV+RERI
Sbjct: 285 AQAPAEEASYALLREQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERI 344
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ RKL++ R++ L+ YL
Sbjct: 345 RQIEAKTLRKLRHPSRSKKLKDYL 368
[85][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 119 bits (298), Expect = 1e-25
Identities = 61/150 (40%), Positives = 101/150 (67%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+ K L E GR P +EE+AE+ +++++L + + + P SLE IG ++ + +
Sbjct: 252 RIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 311
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I + + E ++ + K +++DLE VL +L+PRE+ V+R R+G+DDGRMKTL EIG++
Sbjct: 312 FI-EADIENPDQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFD 370
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A KL++ RN L++Y+
Sbjct: 371 VTRERIRQIEAKALLKLRHPNRNGVLKEYI 400
[86][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 117 bits (293), Expect = 4e-25
Identities = 59/144 (40%), Positives = 92/144 (63%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A +S++R+ ++ + P SLE IG ++ + I D +
Sbjct: 224 RQLLQEKGREPTPEEIAREMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQD 283
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ LE+VL++L PRE++V+R RFG+DDGR +TL E+G+ GV+RERI
Sbjct: 284 APAPAEAASFMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERI 343
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 344 RQIEAKALRKLRHPSRSKKLKDFL 367
[87][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 117 bits (292), Expect = 6e-25
Identities = 60/144 (41%), Positives = 93/144 (64%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL + GR P EE+AEA +S++R+ ++ + P SLE IG ++ + I D +
Sbjct: 231 RQLLQQLGREPSPEEIAEAMEISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQD 290
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ LE+VLD+L RE++V+R RFG+DDGR +TL E+G+ GV+RERI
Sbjct: 291 APAPAEAASFMLLKEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERI 350
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 351 RQIEAKALRKLRHPSRSRKLKDFL 374
[88][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 116 bits (291), Expect = 7e-25
Identities = 60/145 (41%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL E GR P EE+A + ++R+ + + P SLE IG ++ + I D
Sbjct: 216 QRQLLQELGREPTPEEIAHEMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDE 275
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A+ E +++ LE+VL+SL PREK+V+R RFG+DDGR +TL E+G+ GV+RER
Sbjct: 276 DAQAPAEAASFMLLREQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRER 335
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ YL
Sbjct: 336 IRQIEAKALRKLRHPSRSKKLKDYL 360
[89][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 116 bits (291), Expect = 7e-25
Identities = 60/145 (41%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+AE L+ +++ +L + P SLE IG + + I D
Sbjct: 229 QRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 288
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 289 EATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 348
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 349 IRQIEAKALRKLRHPSRSKRLKDFL 373
[90][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 116 bits (291), Expect = 7e-25
Identities = 60/145 (41%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+AE L+ +++ +L + P SLE IG + + I D
Sbjct: 232 QRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 291
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 292 EATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 351
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 352 IRQIEAKALRKLRHPSRSKRLKDFL 376
[91][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 116 bits (291), Expect = 7e-25
Identities = 60/145 (41%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+AE L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[92][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 116 bits (291), Expect = 7e-25
Identities = 60/154 (38%), Positives = 100/154 (64%), Gaps = 1/154 (0%)
Frame = -3
Query: 499 VKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEV 320
+++ + L E GR P +EE+AE +S+++L +VL + + SLE+ + + +
Sbjct: 293 IRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSD 352
Query: 319 IADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGV 140
+ + E+ EE + K ++ DLE V++SL+PRE+ V+R R+G+DDGR+KTL EIG++ V
Sbjct: 353 FIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSV 412
Query: 139 SRERIRPIESCAFRKLKNQKRNQHLQQY-LVSPS 41
+RER+R IE+ A RKL+ R+ L+ Y L +PS
Sbjct: 413 TRERVRQIEAKAIRKLRQPYRSSILRDYVLATPS 446
[93][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 116 bits (290), Expect = 1e-24
Identities = 57/151 (37%), Positives = 99/151 (65%)
Frame = -3
Query: 499 VKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEV 320
+++ + L E GR P +EE+AE +S+++L +VL + + SLE+ + + +
Sbjct: 293 IRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSD 352
Query: 319 IADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGV 140
+ + E+ EE + K ++ DLE V++SL+PRE+ V+R R+G+DDGR+KTL EIG++ V
Sbjct: 353 FIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSV 412
Query: 139 SRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
+RER+R IE+ A RKL+ R+ L+ Y+++
Sbjct: 413 TRERVRQIEAKAIRKLRQPYRSSILRDYVLA 443
[94][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 115 bits (289), Expect = 1e-24
Identities = 59/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 192 QRQLLQDLGREPSPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDS 251
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 252 EAQSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 311
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 312 IRQIEAKALRKLRHPSRSKRLKDFL 336
[95][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 115 bits (289), Expect = 1e-24
Identities = 60/144 (41%), Positives = 91/144 (63%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A + ++R+ + + P SLE IG ++ + I D +
Sbjct: 244 RQLVQELGREPTPEEIAAVMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQD 303
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ LE+VL+SL PRE++V+R RFG+DDGR +TL E+G++ GV+RERI
Sbjct: 304 APAPAEAASFTLLKEQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERI 363
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 364 RQIEAKALRKLRHPSRSKKLKDYL 387
[96][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 115 bits (289), Expect = 1e-24
Identities = 60/144 (41%), Positives = 92/144 (63%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A +S++R+ ++ + P SLE IG ++ + I D +
Sbjct: 223 RQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDED 282
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ LE+VL++L PRE++V+R RFG+DDGR +TL E+G+ GV+RERI
Sbjct: 283 APAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERI 342
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 343 RQIEAKALRKLRHPSRSKKLKDYL 366
[97][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 115 bits (289), Expect = 1e-24
Identities = 60/144 (41%), Positives = 92/144 (63%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A +S++R+ ++ + P SLE IG ++ + I D +
Sbjct: 228 RQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDED 287
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ LE+VL++L PRE++V+R RFG+DDGR +TL E+G+ GV+RERI
Sbjct: 288 APAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERI 347
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 348 RQIEAKALRKLRHPSRSKKLKDYL 371
[98][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 115 bits (288), Expect = 2e-24
Identities = 59/145 (40%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+AE L+ +++ +L + P SLE IG + + I D
Sbjct: 227 QRQLLQDLGREPSPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 286
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 287 DATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 346
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 347 IRQIEAKALRKLRHPSRSKRLKDFL 371
[99][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 115 bits (288), Expect = 2e-24
Identities = 61/144 (42%), Positives = 91/144 (63%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+AE +S ++ +L + P SLE IG + + I D +
Sbjct: 216 RQLVQELGREPLPEEIAEQMDMSEDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQD 275
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A+ + + +K LE+VLDSL PRE++V+R RFG+DDG+ +TL E+G+ GV+RERI
Sbjct: 276 AKPPADAAAFELLKGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERI 335
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 336 RQIEAKALRKLRHPMRSKRLKDYL 359
[100][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 115 bits (288), Expect = 2e-24
Identities = 58/145 (40%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDS 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[101][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 115 bits (288), Expect = 2e-24
Identities = 59/145 (40%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+AE L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 DATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[102][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 115 bits (288), Expect = 2e-24
Identities = 58/153 (37%), Positives = 98/153 (64%)
Frame = -3
Query: 499 VKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEV 320
+++ + L E GR P +EE+A+ +S+++L VL + + SLE+ + + +
Sbjct: 276 IRKTTRNLNIEIGRSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSD 335
Query: 319 IADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGV 140
+ + E+ EE + K ++ DLE V++SL+PRE+ V+R R+G+DDGR+KTL EIG++ V
Sbjct: 336 FIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSV 395
Query: 139 SRERIRPIESCAFRKLKNQKRNQHLQQYLVSPS 41
+RER+R IE+ A RKL+ R+ L+ Y+ S S
Sbjct: 396 TRERVRQIEAKAIRKLRQPYRSSILRDYVASNS 428
[103][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 115 bits (287), Expect = 2e-24
Identities = 59/145 (40%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+AE L+ +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[104][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 115 bits (287), Expect = 2e-24
Identities = 59/145 (40%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+AE L+ +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[105][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 115 bits (287), Expect = 2e-24
Identities = 59/145 (40%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+AE L+ +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[106][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 115 bits (287), Expect = 2e-24
Identities = 58/151 (38%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
++ + +KQ + GR P EE+AE +S K+ +L + SLE+ +G ++N K +
Sbjct: 123 KLLKIQKQFLQKLGREPSIEEIAEEMNISEKKAKVLLEIVQGIVSLEEPVGEDENGKLGD 182
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIG-EML 146
+IAD EA E+L +K+ +++VL +L PRE++V+R RFG+DDG+++TL E+G E+
Sbjct: 183 IIADKEAVDPVEELESMLLKEQVDEVLSTLAPREEKVLRLRFGLDDGKIRTLEEVGKELG 242
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
G+SRER+R IE+ A ++L++ R++ L+++L
Sbjct: 243 GISRERVRQIETKALKRLRHPNRSRRLKEFL 273
[107][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 115 bits (287), Expect = 2e-24
Identities = 60/144 (41%), Positives = 91/144 (63%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A LS++++ ++ + P SLE IG + + I D E
Sbjct: 233 RQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQE 292
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A T + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RERI
Sbjct: 293 ALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 352
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 353 RQIEAKALRKLRHPSRSKRLKDFL 376
[108][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 115 bits (287), Expect = 2e-24
Identities = 59/145 (40%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+AE L+ +++ +L + P SLE IG + + I D
Sbjct: 226 QRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 285
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 286 EATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 345
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 346 IRQIEAKALRKLRHPSRSKRLKDFL 370
[109][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 114 bits (286), Expect = 3e-24
Identities = 57/145 (39%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDS 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE V+D+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EAQSPSDHAAYELLKEQLEDVIDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[110][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 114 bits (285), Expect = 4e-24
Identities = 59/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+AE L+ ++ +L + P SLE IG + + I D
Sbjct: 229 QRQLLQDLGREPTPEEIAEDMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 288
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 289 DATSPSEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 348
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 349 IRQIEAKALRKLRHPSRSKRLKDFL 373
[111][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
RepID=B0MPW5_9FIRM
Length = 358
Score = 114 bits (285), Expect = 4e-24
Identities = 57/150 (38%), Positives = 94/150 (62%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
+VK+ QL ENG P +E+A+ G+++ R+ +L + P SLE IG ++ +
Sbjct: 208 KVKKVSSQLLHENGHEPTPQEIADRLGITVDRVREILRISQDPVSLETPIGEEEDSHLGD 267
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I D +A E + +K+ L ++L +L PRE++V+R RFG++DGR +TL E+G+
Sbjct: 268 FIPDEDAPAPAEAASRTLLKEQLSEILGTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFD 327
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 328 VTRERIRQIEAKALRKLRHPSRSKKLKDFL 357
[112][TOP]
>UniRef100_A9RG56 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RG56_PHYPA
Length = 581
Score = 114 bits (285), Expect = 4e-24
Identities = 58/150 (38%), Positives = 98/150 (65%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ ++R + + GR DEEVA A G+S+++L +L + + P S++Q IG +++L E
Sbjct: 428 RINKSRMMIAEDQGRQARDEEVATAVGISVEKLDFILKSARLPASMDQLIGRDKDLPLWE 487
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
++AD +A++ L + +K+D++ VL +L+P E++V+R RFG+DD + TL +IG
Sbjct: 488 MVADKGFNSADDFLTNEVLKQDIDGVLQTLSPTEREVLRLRFGLDDAQSMTLKDIGIFFK 547
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE A RKL++ R LQ ++
Sbjct: 548 VTRERIRQIEVRALRKLRHPTRRNILQGHV 577
[113][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[114][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[115][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[116][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[117][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[118][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[119][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[120][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[121][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[122][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[123][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[124][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 230 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 289
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 290 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 349
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 350 IRQIEAKALRKLRHPSRSKRLKDFL 374
[125][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 114 bits (284), Expect = 5e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[126][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 113 bits (283), Expect = 6e-24
Identities = 59/144 (40%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A LS++++ ++ + P SLE IG + + I D E
Sbjct: 233 RQLLQELGREPSPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQE 292
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RERI
Sbjct: 293 ALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 352
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 353 RQIEAKALRKLRHPSRSKRLKDFL 376
[127][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 113 bits (283), Expect = 6e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPTPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[128][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 113 bits (283), Expect = 6e-24
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGREPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[129][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 113 bits (283), Expect = 6e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ VL + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[130][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 113 bits (283), Expect = 6e-24
Identities = 59/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EEVAE L+ +++ +L + P SLE IG + + I D
Sbjct: 227 QRQLLQDLGREPSPEEVAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 286
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 287 DALAPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 346
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 347 IRQIEAKALRKLRHPSRSKRLKDFL 371
[131][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 113 bits (282), Expect = 8e-24
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[132][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 113 bits (282), Expect = 8e-24
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[133][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 113 bits (282), Expect = 8e-24
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[134][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 113 bits (282), Expect = 8e-24
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 197 QRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 256
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 257 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 316
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 317 IRQIEAKALRKLRHPSRSKRLKDFM 341
[135][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 113 bits (282), Expect = 8e-24
Identities = 59/144 (40%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A LS++++ ++ + P SLE IG + + I D E
Sbjct: 230 RQLLQELGREPAPEEIAAEMDLSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQE 289
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RERI
Sbjct: 290 ALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 349
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 350 RQIEAKALRKLRHPSRSKRLKDFL 373
[136][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GBZ7_9FIRM
Length = 372
Score = 113 bits (282), Expect = 8e-24
Identities = 57/144 (39%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P +E+A +S +R+ +L + P SLE IG + + I D +
Sbjct: 228 RQLVQELGREPAPDEIAHVMNISEERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQD 287
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
+ E + +K+ L+ VL++L PREK+V+ RFG++DGR +TL E+G++ GV+RERI
Sbjct: 288 VQAPAEAAAFELLKEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERI 347
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 348 RQIEAKALRKLRHPMRSKRLKDYL 371
[137][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 113 bits (282), Expect = 8e-24
Identities = 58/145 (40%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L+ +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEGDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EATSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[138][TOP]
>UniRef100_B9RRX0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9RRX0_RICCO
Length = 560
Score = 113 bits (282), Expect = 8e-24
Identities = 56/153 (36%), Positives = 101/153 (66%)
Frame = -3
Query: 505 YRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPS 326
Y++++ARK L + NG++PDD+E+A+ TGLS+ ++ + + S++QKIG + N K
Sbjct: 408 YQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYL 467
Query: 325 EVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEML 146
E + D ++ EE +++Q M +D+ +L SL+ RE+QV+ RFG++D + K+L EIG
Sbjct: 468 EFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHF 527
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
VS+E +R +E +L+N++ ++L+ Y+ S
Sbjct: 528 HVSKEWVRRLEKRVMTRLRNEETCRNLRHYINS 560
[139][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 113 bits (282), Expect = 8e-24
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[140][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 112 bits (281), Expect = 1e-23
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[141][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 112 bits (281), Expect = 1e-23
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[142][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 112 bits (281), Expect = 1e-23
Identities = 55/144 (38%), Positives = 93/144 (64%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+ L E GR P EE+A+ G+S ++ ++ + P SLE IG ++ + + DP+
Sbjct: 226 RNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPD 285
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A+ E+ +++ L++VL +L RE++V+R RFG+DDGR +TL E+G++ GV+RERI
Sbjct: 286 AKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERI 345
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 346 RQIEAKALRKLRHPSRSKKLKDFL 369
[143][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 112 bits (281), Expect = 1e-23
Identities = 58/144 (40%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P +E+A+ G+S+ ++ ++ + P SLE IG ++ + I D +
Sbjct: 215 RQLLQELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDD 274
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 275 APAPAEAAAFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 334
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 335 RQIEAKALRKLRHPSRSKKLKDYL 358
[144][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
delbrueckii subsp. lactis RepID=Q71HU9_LACDL
Length = 167
Score = 112 bits (281), Expect = 1e-23
Identities = 58/145 (40%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P+ EE+A L +K++ VL + P SLE IG + + I D
Sbjct: 22 QRQLLQDLGRDPEPEEIAAEMDLPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDK 81
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K L +VLD+L RE+ V+R RFG+DDG +TL E+G + GV+RER
Sbjct: 82 DATSPEQHAASEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRER 141
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R+ L+ +L
Sbjct: 142 IRQIEAKALRKLRHPSRSNQLRDFL 166
[145][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 112 bits (281), Expect = 1e-23
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[146][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 112 bits (281), Expect = 1e-23
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[147][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 112 bits (281), Expect = 1e-23
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 222 QRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 281
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 282 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 341
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 342 IRQIEAKALRKLRHPSRSKRLKDFM 366
[148][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 112 bits (281), Expect = 1e-23
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[149][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 112 bits (281), Expect = 1e-23
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[150][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 112 bits (281), Expect = 1e-23
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 EAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 343 IRQIEAKALRKLRHPSRSKRLKDFM 367
[151][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 112 bits (280), Expect = 1e-23
Identities = 59/144 (40%), Positives = 89/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ LS ++ ++ + P SLE IG + + I D E
Sbjct: 231 RQLLQELGREPTPEEIAKEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQE 290
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RERI
Sbjct: 291 ALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 350
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 351 RQIEAKALRKLRHPSRSKRLKDFL 374
[152][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 112 bits (280), Expect = 1e-23
Identities = 57/145 (39%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ ++ ++ +L + P SLE IG + + I D
Sbjct: 224 QRQLLQDLGREPTPEEIGAEMDMNTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 283
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + EE + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 284 DATSPEEHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 343
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 344 IRQIEAKALRKLRHPSRSKQLKDFL 368
[153][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 112 bits (280), Expect = 1e-23
Identities = 57/145 (39%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+A+ L+ +++ +L + P SLE IG + + I D
Sbjct: 219 QRQLLQDLGREPSPEEIAKEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 278
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A ++ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 279 DAMAPQDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 338
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 339 IRQIEAKALRKLRHPSRSKRLKDFL 363
[154][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 112 bits (280), Expect = 1e-23
Identities = 56/145 (38%), Positives = 91/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 221 QRQLLQDLGRDPSPEEIGEEMDLPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 280
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 281 DAQSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 340
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 341 IRQIEAKALRKLRHPSRSKRLKDFM 365
[155][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 112 bits (280), Expect = 1e-23
Identities = 55/150 (36%), Positives = 94/150 (62%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ ++L ENGR P DEE+A+A L+++++ ++ T P SLE +G ++ + +
Sbjct: 250 RMMRTARRLTQENGREPSDEELAQALDLTVEKVRSIRKTSMEPVSLETPVGQEEDSQLGD 309
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+ D + E + Q +++ + +VLD L REK+V++ RFG++DG +TL E+G+ G
Sbjct: 310 FLPDEKLEAPSDAASHQMLREQVAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFG 369
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE A RKL++ + + L+ YL
Sbjct: 370 VTRERIRQIEVKALRKLRHPRFGKKLRDYL 399
[156][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 112 bits (280), Expect = 1e-23
Identities = 60/144 (41%), Positives = 89/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A LS +++ +L + P SLE IG ++ + I D +
Sbjct: 228 RQLLQELGRDPKPEEIAAEMDLSEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDED 287
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L +VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 288 APAPAEAAAFSLLKEQLVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERI 347
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 348 RQIEAKALRKLRHPSRSKKLKDYL 371
[157][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 112 bits (279), Expect = 2e-23
Identities = 59/145 (40%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EEV + LS ++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDYGREPTPEEVGKEMDLSPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 EALAPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKRLKDFL 372
[158][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 112 bits (279), Expect = 2e-23
Identities = 57/144 (39%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL + GR P EE+A+ + + R+ ++ + P SLE IG ++ + I D +
Sbjct: 229 RQLLQQLGREPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQD 288
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A + +K+ LE VLD+L PRE++V+R RFG+DDGR +TL E+G+ GV+RERI
Sbjct: 289 APAPADAASFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERI 348
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 349 RQIEAKALRKLRHPSRSRKLKDFL 372
[159][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 112 bits (279), Expect = 2e-23
Identities = 58/145 (40%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ L +++ +L + P SLE IG + + I D
Sbjct: 224 QRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 283
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 284 EATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 343
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 344 IRQIEAKALRKLRHPSRSKQLKDFL 368
[160][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 112 bits (279), Expect = 2e-23
Identities = 58/144 (40%), Positives = 89/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ L+ ++ ++ + P SLE IG + + I D +
Sbjct: 181 RQLLQEIGREPTPEEIAKEMDLTPDKVREIMKIAQEPVSLETPIGEENDSNLGDFIEDHD 240
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E + +K+ LE+VLD+L RE+ V+R RFGMDDGR +TL E+G+ GV+RERI
Sbjct: 241 APAPAEAAAYELLKEQLEEVLDTLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERI 300
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ ++
Sbjct: 301 RQIEAKALRKLRHPSRSKRLKDFM 324
[161][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 112 bits (279), Expect = 2e-23
Identities = 58/145 (40%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ L +++ +L + P SLE IG + + I D
Sbjct: 224 QRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 283
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 284 EATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 343
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 344 IRQIEAKALRKLRHPSRSKQLKDFL 368
[162][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 111 bits (278), Expect = 2e-23
Identities = 59/144 (40%), Positives = 88/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A LS ++ ++ + P SLE IG + + I D E
Sbjct: 232 RQLLQELGREPTPEEIAAEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQE 291
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RERI
Sbjct: 292 ALAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 351
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 352 RQIEAKALRKLRHPSRSKRLKDFL 375
[163][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 111 bits (278), Expect = 2e-23
Identities = 58/144 (40%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+AE L+ +++ ++ + P SLE IG + + I D +
Sbjct: 232 RQLLQELGREPMPEEIAEKMDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQD 291
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RERI
Sbjct: 292 ALEPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 351
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 352 RQIEAKALRKLRHPSRSKRLKDFL 375
[164][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 111 bits (278), Expect = 2e-23
Identities = 56/137 (40%), Positives = 87/137 (63%)
Frame = -3
Query: 463 GRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQ 284
GR P EE+ E L+ +++ +L + P SLE IG + + I D EA++ +
Sbjct: 3 GREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDH 62
Query: 283 LIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERIRPIESCA 104
+ +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RERIR IE+ A
Sbjct: 63 AAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA 122
Query: 103 FRKLKNQKRNQHLQQYL 53
RKL++ R++ L+ +L
Sbjct: 123 LRKLRHPSRSKRLKDFL 139
[165][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 111 bits (278), Expect = 2e-23
Identities = 58/145 (40%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + K++ +L + P SLE IG + + I D
Sbjct: 236 QRQLLQDLGREPLPEEIGAEMDMPTKKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDH 295
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + MKK LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 296 DATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 355
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 356 IRQIEAKALRKLRHPSRSKQLKDFL 380
[166][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 111 bits (278), Expect = 2e-23
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + +Q+ + GR P EE+A+A ++++++ + P SL Q + N N +
Sbjct: 432 RMSKVERQMVLKLGRDPTHEELADAMEMTVEKIKQIKKASLVPISLSQTVN-NSNGEDKR 490
Query: 322 VIAD---------PEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKT 170
+ D PE ET K +K+DLE VL++LNPRE+ V+R R+G+DDGR+KT
Sbjct: 491 TVEDTLIDDYTEHPEGETG-----KVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKT 545
Query: 169 LPEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
L EIG + V+RERIR IE+ A RKL+ RN L++YL
Sbjct: 546 LEEIGNVFSVTRERIRQIEAKALRKLRQPSRNGILREYL 584
[167][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 111 bits (277), Expect = 3e-23
Identities = 59/144 (40%), Positives = 89/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ +S+ R+ ++ + P SLE IG ++ + I D +
Sbjct: 222 RQLLQELGREPTPEEIAKEMEISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDD 281
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 282 ALAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 341
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 342 RQIEAKALRKLRHPSRSKKLKDYL 365
[168][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NKZ2_GLOVI
Length = 350
Score = 111 bits (277), Expect = 3e-23
Identities = 56/150 (37%), Positives = 95/150 (63%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+K+A +QL + GR P ++E+A+A + +L V + P SLE +G ++ +
Sbjct: 196 RIKKATRQLSQQLGRSPSEDEIAQAVEMDADQLRFVRKAIQLPVSLETPVGREEDTALGD 255
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+I + E +++ M +DLE +L +L PRE+ V+R R+G+ DGR +TL E+G+ G
Sbjct: 256 LI-QAKGNEPEHGVVRDLMNQDLESLLQTLTPRERDVLRLRYGLIDGRSRTLDEVGQQFG 314
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
++RERIR IE+ A RKL++ +R Q +++YL
Sbjct: 315 LTRERIRQIEARALRKLRHPQRLQRVREYL 344
[169][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 111 bits (277), Expect = 3e-23
Identities = 56/145 (38%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 224 QRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 283
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
E ++ + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 284 EVQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 343
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ ++
Sbjct: 344 IRQIEAKALRKLRHPSRSKRLKDFM 368
[170][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 111 bits (277), Expect = 3e-23
Identities = 59/144 (40%), Positives = 89/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ L +++ +L + P SLE IG ++ + I D +
Sbjct: 228 RQLLQEFGREPKPEEIAKEMDLPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDD 287
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L +VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 288 APAPAEAAAFSLLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERI 347
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 348 RQIEAKALRKLRHPSRSKKLKDYL 371
[171][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
MC2 155 RepID=A0QVZ5_MYCS2
Length = 319
Score = 111 bits (277), Expect = 3e-23
Identities = 54/149 (36%), Positives = 95/149 (63%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
++ +++++ GR DEE+AE +G+ +++++ +L + P SL+ +G ++ +
Sbjct: 169 KLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGD 228
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I D EA +AE +I + + D+ VL +L+ RE+QVIR RFG+DDG+ +TL +IG++ G
Sbjct: 229 FIEDSEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFG 288
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQY 56
+SRER+R IE KL+N +R L+ Y
Sbjct: 289 LSRERVRQIEREVMAKLRNGERADRLRSY 317
[172][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 111 bits (277), Expect = 3e-23
Identities = 56/145 (38%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 271 QRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 330
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 331 DATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 390
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 391 IRQIEAKALRKLRHPSRSKQLKDFL 415
[173][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 111 bits (277), Expect = 3e-23
Identities = 56/145 (38%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 207 QRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 266
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 267 DATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 326
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 327 IRQIEAKALRKLRHPSRSKQLKDFL 351
[174][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 111 bits (277), Expect = 3e-23
Identities = 56/145 (38%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 271 QRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 330
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 331 DATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 390
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 391 IRQIEAKALRKLRHPSRSKQLKDFL 415
[175][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 111 bits (277), Expect = 3e-23
Identities = 56/145 (38%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 277 QRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 336
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 337 DATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 396
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 397 IRQIEAKALRKLRHPSRSKQLKDFL 421
[176][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
RepID=C2C209_LISGR
Length = 389
Score = 111 bits (277), Expect = 3e-23
Identities = 57/145 (39%), Positives = 88/145 (60%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++ L + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 244 QRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 303
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G + GV+RER
Sbjct: 304 EATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRER 363
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 364 IRQIEAKALRKLRHPSRSKQLKDFL 388
[177][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 111 bits (277), Expect = 3e-23
Identities = 56/145 (38%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++ L + GR P EE+AE +S ++ ++ + P SLE IG + + I D
Sbjct: 232 QRSLLQDLGREPTPEEIAEEMDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQ 291
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 292 DATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 351
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 352 IRQIEAKALRKLRHPSRSKRLKDFL 376
[178][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 111 bits (277), Expect = 3e-23
Identities = 56/145 (38%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 271 QRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 330
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 331 DATSPEDHASYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 390
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 391 IRQIEAKALRKLRHPSRSKQLKDFL 415
[179][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R970_THETN
Length = 372
Score = 110 bits (276), Expect = 4e-23
Identities = 58/145 (40%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL E GR P EE+A+ G+ +++ +L + P SLE IG ++ + I D
Sbjct: 227 QRQLLQELGREPTPEELAKEMGMPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDE 286
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RER
Sbjct: 287 DAPAPAEAAAYTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRER 346
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 347 IRQIEAKALRKLRHPSRSKKLKDFL 371
[180][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 110 bits (276), Expect = 4e-23
Identities = 57/144 (39%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ + ++++ +L + P SLE IG ++ + I D +
Sbjct: 273 RQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDD 332
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L +VLDSLN REK+V++ RFG++DGR +TL E+G+ V+RERI
Sbjct: 333 ALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERI 392
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 393 RQIEAKALRKLRHPSRSKKLKDFL 416
[181][TOP]
>UniRef100_A8ETJ7 RNA polymerase sigma factor n=1 Tax=Arcobacter butzleri RM4018
RepID=A8ETJ7_ARCB4
Length = 626
Score = 110 bits (276), Expect = 4e-23
Identities = 59/153 (38%), Positives = 98/153 (64%), Gaps = 1/153 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ ENG+ PD EE+A+ GL + ++ V+ K P SLE IG +++ K +
Sbjct: 474 RINKIIRKGVQENGKEPDIEEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDEDGKFGD 533
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D +A T + ++K+ ++ ++++L LN RE+ VIR RFG M+D +TL EIG+ L
Sbjct: 534 FVPDEKAPTPIDNIMKEDLQGQIDQILSQLNEREQAVIRMRFGLMEDASDRTLEEIGKEL 593
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
V+RER+R IES A +KLK+ K ++L+ Y+ S
Sbjct: 594 NVTRERVRQIESSAIKKLKHPKVGKNLKNYVES 626
[182][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 110 bits (276), Expect = 4e-23
Identities = 57/144 (39%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ + ++++ +L + P SLE IG ++ + I D +
Sbjct: 267 RQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDD 326
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L +VLDSLN REK+V++ RFG++DGR +TL E+G+ V+RERI
Sbjct: 327 ALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERI 386
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 387 RQIEAKALRKLRHPSRSKKLKDFL 410
[183][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 110 bits (276), Expect = 4e-23
Identities = 57/144 (39%), Positives = 89/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ + ++++ ++ + P SLE IG ++ + I D +
Sbjct: 214 RQLLQELGREPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDD 273
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 274 APAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 333
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 334 RQIEAKALRKLRHPSRSKKLKDYL 357
[184][TOP]
>UniRef100_Q9S1D0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori
RepID=Q9S1D0_HELPY
Length = 675
Score = 110 bits (276), Expect = 4e-23
Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K +
Sbjct: 523 RINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGD 582
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D ++ + ++++ +K +E VLD LN REK VIR RFG +DD +TL EIG+ L
Sbjct: 583 FVEDKNIASSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKEL 642
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RER+R IES A +KL++ + + L+ YL
Sbjct: 643 NVTRERVRQIESSAIKKLRSPQYGRILRNYL 673
[185][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 110 bits (276), Expect = 4e-23
Identities = 57/144 (39%), Positives = 89/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ + ++++ ++ + P SLE IG ++ + I D +
Sbjct: 214 RQLLQELGREPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDD 273
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 274 APAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 333
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 334 RQIEAKALRKLRHPSRSKKLKDYL 357
[186][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
RepID=C7CSZ1_ENTFA
Length = 368
Score = 110 bits (276), Expect = 4e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 DATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 343 IRQIEAKALRKLRHPSRSKQLKDFL 367
[187][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 110 bits (276), Expect = 4e-23
Identities = 59/144 (40%), Positives = 88/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EEVA+ + + ++ ++ + P SLE IG ++ + I D E
Sbjct: 217 RQLLQELGREPQPEEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDE 276
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 277 APAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 336
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 337 RQIEAKALRKLRHPSRSKKLKDYL 360
[188][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
RepID=A5I618_CLOBH
Length = 361
Score = 110 bits (276), Expect = 4e-23
Identities = 59/144 (40%), Positives = 88/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EEVA+ + + ++ ++ + P SLE IG ++ + I D E
Sbjct: 217 RQLLQELGREPQPEEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDE 276
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 277 APAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 336
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 337 RQIEAKALRKLRHPSRSKKLKDYL 360
[189][TOP]
>UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
RepID=A8UQQ5_9AQUI
Length = 571
Score = 110 bits (276), Expect = 4e-23
Identities = 54/149 (36%), Positives = 98/149 (65%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ +A K+L+ E GR P EE+A+ G++ ++ VL + + P SLE IG +++ +
Sbjct: 421 RIIKASKRLFQELGREPTPEEIAKHLGMTPDKVRKVLRSAQEPISLETPIGDDEDTFLKD 480
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I D EE + ++ +++ LE+VL++L+ +E++++R+R+G+ DG TL ++G+M
Sbjct: 481 FIEDKSVPNPEEYVSRKLLREQLERVLETLSDKEREILRYRYGLVDGTEYTLEQVGKMFN 540
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQY 56
V+RERIR IES A RKL++ R ++L+ +
Sbjct: 541 VTRERIRQIESKAIRKLRHPSRAKYLKDF 569
[190][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
RepID=RPOD_ENTFA
Length = 368
Score = 110 bits (276), Expect = 4e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 DATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 343 IRQIEAKALRKLRHPSRSKQLKDFL 367
[191][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 110 bits (275), Expect = 5e-23
Identities = 56/145 (38%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + ++ +L + P SLE IG + + I D
Sbjct: 227 QRQLLQDLGREPTPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDK 286
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE+VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 287 DATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 346
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R+ L+ +L
Sbjct: 347 IRQIEAKALRKLRHPSRSNQLKDFL 371
[192][TOP]
>UniRef100_B6JPJ0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori P12
RepID=B6JPJ0_HELP2
Length = 680
Score = 110 bits (275), Expect = 5e-23
Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K +
Sbjct: 528 RINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGD 587
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D ++ + ++++ +K +E VLD LN REK VIR RFG +DD +TL EIG+ L
Sbjct: 588 FVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKEL 647
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RER+R IES A +KL++ + + L+ YL
Sbjct: 648 NVTRERVRQIESSAIKKLRSPQYGRILRNYL 678
[193][TOP]
>UniRef100_B5Z9M1 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori G27
RepID=B5Z9M1_HELPG
Length = 682
Score = 110 bits (275), Expect = 5e-23
Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K +
Sbjct: 530 RINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGD 589
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D ++ + ++++ +K +E VLD LN REK VIR RFG +DD +TL EIG+ L
Sbjct: 590 FVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKEL 649
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RER+R IES A +KL++ + + L+ YL
Sbjct: 650 NVTRERVRQIESSAIKKLRSPQYGRILRNYL 680
[194][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 110 bits (275), Expect = 5e-23
Identities = 55/145 (37%), Positives = 92/145 (63%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+++ ++ +++ +L + P SLE IG + + I D
Sbjct: 216 QRQLLQDLGREPTPEEISKEMEITPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 275
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A ++ + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 276 DATAPQDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 335
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 336 IRQIEAKALRKLRHPSRSKRLKDFL 360
[195][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 110 bits (275), Expect = 5e-23
Identities = 58/144 (40%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ + ++R+ ++ + P SLE IG ++ + I D +
Sbjct: 227 RQLLQEYGREPMPEEIAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQD 286
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ LE+VL++L RE +V+R RFG+DDGR +TL E+G+ GV+RERI
Sbjct: 287 APAPAEAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERI 346
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 347 RQIEAKALRKLRHPSRSKKLKDYL 370
[196][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 110 bits (275), Expect = 5e-23
Identities = 54/149 (36%), Positives = 94/149 (63%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
++ +++++ GR DEE+AE +G+ ++++ +L + P SL+ +G ++ +
Sbjct: 169 KLARIKREMHQNLGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGD 228
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I D EA +AE +I + + D+ VL +L+ RE+QVIR RFG+DDG+ +TL +IG++ G
Sbjct: 229 FIEDAEAMSAENAVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFG 288
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQY 56
+SRER+R IE KL+N +R L+ Y
Sbjct: 289 LSRERVRQIEREVMAKLRNGERADRLRSY 317
[197][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 110 bits (275), Expect = 5e-23
Identities = 58/144 (40%), Positives = 88/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ + + ++ ++ + P SLE IG ++ + I D E
Sbjct: 224 RQLLQELGREPQPEEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDE 283
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 284 APAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 343
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 344 RQIEAKALRKLRHPSRSKKLKDYL 367
[198][TOP]
>UniRef100_C9AAM5 RNA polymerase sigma-43 factor n=3 Tax=Enterococcus casseliflavus
RepID=C9AAM5_ENTCA
Length = 368
Score = 110 bits (275), Expect = 5e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 DATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 343 IRQIEAKALRKLRHPSRSKQLKDFL 367
[199][TOP]
>UniRef100_C8ZYV7 RNA polymerase sigma-43 factor n=1 Tax=Enterococcus gallinarum EG2
RepID=C8ZYV7_ENTGA
Length = 368
Score = 110 bits (275), Expect = 5e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ L +++ +L + P SLE IG + + I D
Sbjct: 223 QRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 282
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 283 DATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRER 342
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 343 IRQIEAKALRKLRHPSRSKQLKDFL 367
[200][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 110 bits (275), Expect = 5e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 235 QRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 294
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + MKK LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 295 DATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 354
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 355 IRQIEAKALRKLRHPSRSKQLKDFL 379
[201][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 110 bits (275), Expect = 5e-23
Identities = 58/144 (40%), Positives = 88/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ + + ++ ++ + P SLE IG ++ + I D E
Sbjct: 224 RQLLQELGREPQPEEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDE 283
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 284 APAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 343
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 344 RQIEAKALRKLRHPSRSKKLKDYL 367
[202][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 110 bits (275), Expect = 5e-23
Identities = 56/145 (38%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + ++ +L + P SLE IG + + I D
Sbjct: 219 QRQLLQDLGREPTPEEIGAEMDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDK 278
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE+VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 279 DATSPEQHASYEMLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 338
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R+ L+ +L
Sbjct: 339 IRQIEAKALRKLRHPSRSNQLKDFL 363
[203][TOP]
>UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V564_9FIRM
Length = 383
Score = 110 bits (275), Expect = 5e-23
Identities = 57/144 (39%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ G+++ R+ ++ + P SLE IG ++ + I D
Sbjct: 239 RQLLQELGRDPHPEEIAKEMGITVARVHEIMKIAQEPVSLETPIGEEEDSHLGDFIEDEA 298
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +++ LE+VL++L REK V+R RFG++DGR +TL E+G+ GV+RERI
Sbjct: 299 APAPAEAASFMLLREQLEEVLETLTDREKNVLRLRFGLEDGRSRTLEEVGQSFGVTRERI 358
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 359 RQIEAKALRKLRHPSRSKVLRDFL 382
[204][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 110 bits (275), Expect = 5e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 235 QRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 294
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + MKK LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 295 DATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 354
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 355 IRQIEAKALRKLRHPSRSKQLKDFL 379
[205][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 110 bits (275), Expect = 5e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 235 QRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 294
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + MKK LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 295 DATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 354
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 355 IRQIEAKALRKLRHPSRSKQLKDFL 379
[206][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 110 bits (275), Expect = 5e-23
Identities = 56/145 (38%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + ++ +L + P SLE IG + + I D
Sbjct: 227 QRQLLQDLGREPTPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDK 286
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE+VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 287 DATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 346
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R+ L+ +L
Sbjct: 347 IRQIEAKALRKLRHPSRSNQLKDFL 371
[207][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C2E1K8_9LACO
Length = 364
Score = 110 bits (275), Expect = 5e-23
Identities = 56/145 (38%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + ++ +L + P SLE IG + + I D
Sbjct: 219 QRQLLQDLGREPTPEEIGAEMDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDK 278
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE+VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 279 DATSPEQHASYEMLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 338
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R+ L+ +L
Sbjct: 339 IRQIEAKALRKLRHPSRSNQLKDFL 363
[208][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
RepID=A5VJI3_LACRD
Length = 380
Score = 110 bits (275), Expect = 5e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 235 QRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 294
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + MKK LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 295 DATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 354
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 355 IRQIEAKALRKLRHPSRSKQLKDFL 379
[209][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 110 bits (275), Expect = 5e-23
Identities = 56/145 (38%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + ++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPTPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDK 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE+VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 288 DATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R+ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSNQLKDFL 372
[210][TOP]
>UniRef100_B9Y1K0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori B128
RepID=B9Y1K0_HELPY
Length = 679
Score = 110 bits (275), Expect = 5e-23
Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K +
Sbjct: 527 RINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGD 586
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D ++ + ++++ +K +E VLD LN REK VIR RFG +DD +TL EIG+ L
Sbjct: 587 FVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKEL 646
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RER+R IES A +KL++ + + L+ YL
Sbjct: 647 NVTRERVRQIESSAIKKLRSPQYGRILRNYL 677
[211][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 110 bits (275), Expect = 5e-23
Identities = 58/144 (40%), Positives = 88/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A L+ +++ + + P SLE IG + + I D E
Sbjct: 224 RQLLQELGREPTPEEIAAEMDLTPEKVREIQKIAQEPVSLETPIGEEDDSHLGDFIPDDE 283
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RERI
Sbjct: 284 APAPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 343
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 344 RQIEAKALRKLRHPSRSKRLKDFL 367
[212][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XRX4_LACRE
Length = 380
Score = 110 bits (275), Expect = 5e-23
Identities = 57/145 (39%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 235 QRQLLQDLGREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 294
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + MKK LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 295 DATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 354
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 355 IRQIEAKALRKLRHPSRSKQLKDFL 379
[213][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 110 bits (275), Expect = 5e-23
Identities = 58/144 (40%), Positives = 88/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ + + ++ ++ + P SLE IG ++ + I D E
Sbjct: 224 RQLLQELGREPQPEEIAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDE 283
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 284 APAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 343
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 344 RQIEAKALRKLRHPSRSKKLKDYL 367
[214][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 110 bits (275), Expect = 5e-23
Identities = 58/144 (40%), Positives = 88/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A + ++R+ +L + P SLE IG ++ + I D
Sbjct: 238 RQLLQELGREPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDN 297
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
E + +K+ L++VLD+L RE++V+R RFGMDDGR +TL E+G+ V+RERI
Sbjct: 298 VPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERI 357
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 358 RQIEAKALRKLRHPSRSRKLRDYL 381
[215][TOP]
>UniRef100_P55993 RNA polymerase sigma factor rpoD n=1 Tax=Helicobacter pylori
RepID=RPOD_HELPY
Length = 671
Score = 110 bits (275), Expect = 5e-23
Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K +
Sbjct: 519 RINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGD 578
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D ++ + ++++ +K +E VLD LN REK VIR RFG +DD +TL EIG+ L
Sbjct: 579 FVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKEL 638
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RER+R IES A +KL++ + + L+ YL
Sbjct: 639 NVTRERVRQIESSAIKKLRSPQYGRILRNYL 669
[216][TOP]
>UniRef100_UPI0001853CA1 RNA polymerase sigma factor RpoD n=1 Tax=Helicobacter pylori
HPKX_438_AG0C1 RepID=UPI0001853CA1
Length = 319
Score = 110 bits (274), Expect = 7e-23
Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K +
Sbjct: 167 RINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGD 226
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D ++ + ++++ +K +E VLD LN REK VIR RFG +DD +TL EIG+ L
Sbjct: 227 FVEDKNIVSSIDHIMREDLKVQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKEL 286
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RER+R IES A +KL++ + + L+ YL
Sbjct: 287 NVTRERVRQIESSAIKKLRSPQYGRILRNYL 317
[217][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
J2-071 RepID=UPI0000F53BBC
Length = 374
Score = 110 bits (274), Expect = 7e-23
Identities = 56/145 (38%), Positives = 88/145 (60%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++ L + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 229 QRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 288
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G + GV+RER
Sbjct: 289 DATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRER 348
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 349 IRQIEAKALRKLRHPSRSKQLKDFL 373
[218][TOP]
>UniRef100_B2URS0 RNA polymerase sigma factor n=1 Tax=Helicobacter pylori Shi470
RepID=B2URS0_HELPS
Length = 661
Score = 110 bits (274), Expect = 7e-23
Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K +
Sbjct: 509 RINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGD 568
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D ++ + ++++ +K +E VLD LN REK VIR RFG +DD +TL EIG+ L
Sbjct: 569 FVEDKNIVSSIDHIMREDLKVQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKEL 628
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RER+R IES A +KL++ + + L+ YL
Sbjct: 629 NVTRERVRQIESSAIKKLRSPQYGRILRNYL 659
[219][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
RepID=A5N6R2_CLOK5
Length = 354
Score = 110 bits (274), Expect = 7e-23
Identities = 59/144 (40%), Positives = 88/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EEVA+ + + ++ ++ + P SLE IG ++ + I D E
Sbjct: 210 RQLLQELGREPHAEEVAKIMEMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDE 269
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 270 APAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 329
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 330 RQIEAKALRKLRHPSRSKKLKDYL 353
[220][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
RepID=A4TCQ2_MYCGI
Length = 329
Score = 110 bits (274), Expect = 7e-23
Identities = 54/149 (36%), Positives = 94/149 (63%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
++ +++++ GR DEE+AE +G+ +++++ +L + P SL+ +G ++ +
Sbjct: 179 KLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGD 238
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I D EA +AE +I + + D+ VL +L+ RE+QVIR RFG+DDG+ +TL +IG++ G
Sbjct: 239 FIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFG 298
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQY 56
+SRER+R IE KL+N R L+ Y
Sbjct: 299 LSRERVRQIEREVMAKLRNGDRADRLRSY 327
[221][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
13335 RepID=C8PAI1_9LACO
Length = 382
Score = 110 bits (274), Expect = 7e-23
Identities = 56/145 (38%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ +S ++ +L + P SLE IG + + I D
Sbjct: 237 QRQLLQDLGREPTPEEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDK 296
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K+ LE+VLD+L RE+ V+R RFG++DGR +TL E+G + GV+RER
Sbjct: 297 DATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRER 356
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R+ L+ +L
Sbjct: 357 IRQIEAKALRKLRHPSRSNQLKDFL 381
[222][TOP]
>UniRef100_C3XP94 RNA polymerase sigma factor (Fragment) n=1 Tax=Helicobacter
winghamensis ATCC BAA-430 RepID=C3XP94_9HELI
Length = 615
Score = 110 bits (274), Expect = 7e-23
Identities = 60/150 (40%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ E G+ PD E++AE GL + ++ V+ K P SLE IG ++ K +
Sbjct: 466 RINKIMRKCLQEEGKEPDLEKIAEEVGLPLDKVKNVIKITKEPISLEAPIGNGEDGKFGD 525
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D A + ++K+ +K ++ VLD LN REK VIR RFG +DD +TL EIG+ L
Sbjct: 526 FVEDKSAVGPMDHILKEDLKSQIDDVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKEL 585
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQY 56
V+RER+R IES A +KLK+ K + L+ Y
Sbjct: 586 NVTRERVRQIESSAIKKLKHPKVGRKLKNY 615
[223][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
RepID=B2GBZ9_LACF3
Length = 380
Score = 110 bits (274), Expect = 7e-23
Identities = 57/145 (39%), Positives = 88/145 (60%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 235 QRQLLQDLGREPLPEEIGAEMDMDTQKVRDILKISQEPVSLETPIGEEDDSHLGDFIEDH 294
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + MKK LE VLD+L RE+ V+R RFG+DDGR +TL E+G + GV+RER
Sbjct: 295 DATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRER 354
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 355 IRQIEAKALRKLRHPSRSKQLKDFL 379
[224][TOP]
>UniRef100_B9HE05 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HE05_POPTR
Length = 559
Score = 110 bits (274), Expect = 7e-23
Identities = 57/151 (37%), Positives = 96/151 (63%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
++++ARK L + +GR+PDD EVA+ TGLS+ ++ + + SL+QKIG K SE
Sbjct: 408 KIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSE 467
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I D + EE +++Q M++++ +L L+ REKQV+ R+G D + K+L EIG +
Sbjct: 468 FIPDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFR 527
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYLV 50
VS+ER+R IE KL+++ ++L +Y++
Sbjct: 528 VSKERVRKIEKKIMIKLRDEGIRRNLSRYMI 558
[225][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
RepID=RPOD_LISMO
Length = 374
Score = 110 bits (274), Expect = 7e-23
Identities = 56/145 (38%), Positives = 88/145 (60%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++ L + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 229 QRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 288
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G + GV+RER
Sbjct: 289 DATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRER 348
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 349 IRQIEAKALRKLRHPSRSKQLKDFL 373
[226][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
Length = 374
Score = 110 bits (274), Expect = 7e-23
Identities = 56/145 (38%), Positives = 88/145 (60%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++ L + GR P EE+ E L +++ +L + P SLE IG + + I D
Sbjct: 229 QRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 288
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G + GV+RER
Sbjct: 289 DATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRER 348
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 349 IRQIEAKALRKLRHPSRSKQLKDFL 373
[227][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 110 bits (274), Expect = 7e-23
Identities = 56/144 (38%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ + + ++ ++ + P SLE IG ++ + I D E
Sbjct: 234 RQLLQELGREPQPEEIAKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDE 293
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A + + +K+ L K+L++L PRE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 294 APAPADAAAFRMLKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 353
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 354 RQIEAKALRKLRHPSRSKKLKDYL 377
[228][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 109 bits (273), Expect = 9e-23
Identities = 57/150 (38%), Positives = 91/150 (60%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
+VK+ QL E G P EE+AE +S+ ++ ++ + P SLE IG ++ +
Sbjct: 214 KVKKVSSQLLHEYGHDPSAEEIAERLDMSVDKVREIMRVAQEPVSLETPIGEEEDSHLGD 273
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I D +A E + +K+ L VL +L PRE++V+R RFG++DGR +TL E+G+
Sbjct: 274 FIPDDDAPVPAEAASQTLLKEQLADVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFN 333
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 334 VTRERIRQIEAKALRKLRHPSRSKKLRDFL 363
[229][TOP]
>UniRef100_A7I1A4 RNA polymerase sigma factor n=1 Tax=Campylobacter hominis ATCC
BAA-381 RepID=A7I1A4_CAMHC
Length = 624
Score = 109 bits (273), Expect = 9e-23
Identities = 59/153 (38%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ ENG+ PD +A+ GLS+ ++ V+ K P SLE +G + K +
Sbjct: 472 RINKINRKYVQENGKEPDITILAKEVGLSIDKIKQVIKITKEPISLEAPVGNEDDGKFGD 531
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D + +Q++K +K+ ++KVLD LN RE+ VIR RFG +DD +TL EIG+ L
Sbjct: 532 FVEDKGTISPIDQILKNDLKEQIDKVLDQLNERERAVIRMRFGLLDDESDRTLEEIGKEL 591
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 47
V+RER+R IE+ A +KLK+ K + L++Y+ S
Sbjct: 592 SVTRERVRQIEASAIKKLKHPKVGRDLKKYIES 624
[230][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 109 bits (273), Expect = 9e-23
Identities = 56/150 (37%), Positives = 92/150 (61%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
++ ++QL E GR P EE+A+ ++ ++ +L + P SLE IG ++ +
Sbjct: 213 KLVRVQRQLLQELGRDPSPEEIAKEMNITEDKVREILKIAQEPVSLETPIGEEEDSHLGD 272
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I D EA E+ +++ L++VL +L RE++V+R RFG+DDGR +TL E+G+ G
Sbjct: 273 FIEDHEARAPAEEASFTLLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFG 332
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ RKL++ R++ L+ YL
Sbjct: 333 VTRERIRQIEAKTLRKLRHPSRSKKLKDYL 362
[231][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
RepID=A4J7B9_DESRM
Length = 367
Score = 109 bits (273), Expect = 9e-23
Identities = 56/144 (38%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ +S +++ +L + P SLE IG ++ + I D +
Sbjct: 223 RQLLQELGREPSPEEIAKEMDISGEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDAD 282
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E+ +++ L++VL +L RE++V+R RFG+DDGR +TL E+G+ GV+RERI
Sbjct: 283 ARAPAEEASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERI 342
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ RKL++ R++ L+ YL
Sbjct: 343 RQIEAKTLRKLRHPSRSKKLKDYL 366
[232][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
RepID=P77870_HELMO
Length = 333
Score = 109 bits (273), Expect = 9e-23
Identities = 57/144 (39%), Positives = 90/144 (62%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P+ EE+A+ + + R+ ++ + P SLE IG ++ + I D +
Sbjct: 189 RQLLQEFGREPNPEEIAKEMDIPVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQD 248
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ LE+VL++L RE +V+R RFG+DDGR +TL E+G+ GV+RERI
Sbjct: 249 APAPAEAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERI 308
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ Y+
Sbjct: 309 RQIEAKALRKLRHPSRSKKLKDYV 332
[233][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium papyrosolvens DSM 2782
RepID=C7IFS3_9CLOT
Length = 359
Score = 109 bits (273), Expect = 9e-23
Identities = 57/144 (39%), Positives = 89/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P +E+A+ G+S+ ++ ++ + P SLE IG ++ + I D +
Sbjct: 215 RQLLQELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDD 274
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A E +K+ L VLD+L RE++V+R RFG+DDGR +TL E+G+ V+RERI
Sbjct: 275 APAPAEAAAFTLLKEQLIDVLDTLTAREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERI 334
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 335 RQIEAKALRKLRHPSRSKKLKDYL 358
[234][TOP]
>UniRef100_C7H329 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
prausnitzii A2-165 RepID=C7H329_9FIRM
Length = 461
Score = 109 bits (273), Expect = 9e-23
Identities = 55/141 (39%), Positives = 88/141 (62%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+++A QL +NG P EE+A+A +S++R+ + + P SLE +G ++ +
Sbjct: 311 RMRQATNQLVYQNGHEPTPEELAKAMDMSVERVREIQRMAQEPASLESPVGEEEDSSLGD 370
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+AD AE + + + + + + L SL PRE++VIR RFG+DDGR +TL E+G G
Sbjct: 371 FVADENAEAPGKAADRAMVAQQINQALKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFG 430
Query: 142 VSRERIRPIESCAFRKLKNQK 80
V+RER+R IE+ A RKL ++K
Sbjct: 431 VTRERVRQIEAKAIRKLHSRK 451
[235][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
Length = 357
Score = 109 bits (273), Expect = 9e-23
Identities = 57/145 (39%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL E GR P EE+A+ G+ +++ ++ + P SLE IG ++ + I D
Sbjct: 212 QRQLLQELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDE 271
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RER
Sbjct: 272 DAPAPAEAAAFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRER 331
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 332 IRQIEAKALRKLRHPSRSKKLKDFL 356
[236][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PMA8_9THEO
Length = 357
Score = 109 bits (273), Expect = 9e-23
Identities = 57/145 (39%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL E GR P EE+A+ G+ +++ ++ + P SLE IG ++ + I D
Sbjct: 212 QRQLLQELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDE 271
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RER
Sbjct: 272 DAPAPAEAAAFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRER 331
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 332 IRQIEAKALRKLRHPSRSKKLKDFL 356
[237][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
RepID=B0K6Y0_THEPX
Length = 357
Score = 109 bits (273), Expect = 9e-23
Identities = 57/145 (39%), Positives = 90/145 (62%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL E GR P EE+A+ G+ +++ ++ + P SLE IG ++ + I D
Sbjct: 212 QRQLLQELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDE 271
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A E +K+ L VLD+L PRE++V+R RFG+DDGR +TL E+G+ V+RER
Sbjct: 272 DAPAPAEAAAFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRER 331
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 332 IRQIEAKALRKLRHPSRSKKLKDFL 356
[238][TOP]
>UniRef100_B4WSK5 RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WSK5_9SYNE
Length = 298
Score = 109 bits (273), Expect = 9e-23
Identities = 55/150 (36%), Positives = 98/150 (65%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
++K+A++Q ++GR P E+A+ATG ++K++ L + P SL+ K+G NQ+ + +
Sbjct: 150 KIKKAQRQFTQQHGRTPTASEIAQATGFTIKQVREYLDRSRQPLSLDLKVGDNQDTQLGD 209
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
++ D + +T ++ +K DL++++ L P+++QVI RFG++DG+ TL +IG ML
Sbjct: 210 LLED-DGQTPDDYATASSLKSDLKRIMADLTPQQQQVIALRFGLEDGKNMTLAKIGAMLD 268
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
+SRER+R IE A KL+ KR +++YL
Sbjct: 269 ISRERVRQIEREALTKLR--KRQSDMREYL 296
[239][TOP]
>UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9S0J0_RICCO
Length = 548
Score = 109 bits (273), Expect = 9e-23
Identities = 56/149 (37%), Positives = 91/149 (61%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
+V EA++ E +P EE+A+ G++ RL +L + P S++Q + +Q E
Sbjct: 395 KVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQE 454
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+ AD E E E + KQ M+K + +L+ LNPRE+++IR R+G++DG+ K+L EIG + G
Sbjct: 455 ITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFG 514
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQY 56
+S+ER+R +ES A KLK + L+ Y
Sbjct: 515 LSKERVRQLESRALYKLKQCLASHGLEAY 543
[240][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 109 bits (272), Expect = 1e-22
Identities = 57/145 (39%), Positives = 88/145 (60%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++ L + GR P EE+ E L ++ +L + P SLE IG + + I D
Sbjct: 235 QRSLLQDLGREPTPEEIGEEMELGPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 294
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
EA + + + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 295 EAISPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 354
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 355 IRQIEAKALRKLRHPSRSKRLKDFL 379
[241][TOP]
>UniRef100_Q17VT9 RNA polymerase sigma factor n=1 Tax=Helicobacter acinonychis str.
Sheeba RepID=Q17VT9_HELAH
Length = 659
Score = 109 bits (272), Expect = 1e-22
Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
R+ + ++ ENG+ PD E VAE GLS+ ++ V+ K P SLE +G + + K +
Sbjct: 507 RINKVMRKHMQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGD 566
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG-MDDGRMKTLPEIGEML 146
+ D ++ + ++++ +K +E VLD LN REK VIR RFG +DD +TL EIG+ L
Sbjct: 567 FVEDKNIVSSIDHIMREDLKVQIEGVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKEL 626
Query: 145 GVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RER+R IES A +KL++ + + L+ YL
Sbjct: 627 NVTRERVRQIESSAIKKLRSPQYGRILRNYL 657
[242][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
Length = 372
Score = 109 bits (272), Expect = 1e-22
Identities = 56/145 (38%), Positives = 87/145 (60%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++Q + GR P+ EE+A L +K++ L + P SLE IG + + I D
Sbjct: 227 QRQFLQDLGRDPEPEEIAAEMDLPVKKVREALKVAQEPVSLETPIGEEDDSHLGDFIEDK 286
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E+ + +K L +VLD+L RE+ V+R RFG+DDG +TL E+G + GV+RER
Sbjct: 287 DATSPEQHAASEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRER 346
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R+ L+ +L
Sbjct: 347 IRQIEAKALRKLRHPSRSNKLRDFL 371
[243][TOP]
>UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
19977 RepID=B1MCY5_MYCA9
Length = 323
Score = 109 bits (272), Expect = 1e-22
Identities = 53/149 (35%), Positives = 94/149 (63%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
++ +++L+ GR DEE+AE +G+ ++++ +L + P SL+ +G ++ +
Sbjct: 173 KLARIKRELHQRLGREASDEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEEAPLGD 232
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
I D EA +AE +I + + D+ VL +L+ RE+QVIR R+G+DDG+ +TL +IG++ G
Sbjct: 233 FIEDTEAMSAENAVIAELLHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFG 292
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQY 56
+SRER+R IE KL++ R + L+ Y
Sbjct: 293 LSRERVRQIEREVMAKLRHGDRAERLRSY 321
[244][TOP]
>UniRef100_UPI00016C0A4F RNA polymerase, sigma 70 subunit, RpoD family protein n=1
Tax=Epulopiscium sp. 'N.t. morphotype B'
RepID=UPI00016C0A4F
Length = 364
Score = 108 bits (271), Expect = 2e-22
Identities = 56/150 (37%), Positives = 91/150 (60%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSE 323
++ ++QL E GR P EE+A LS+ ++ ++ + P +LE IG ++ +
Sbjct: 214 KLMRIQRQLLQELGRDPQPEEIAREMELSVNKVREIMKISQEPVALETPIGEEEDTNLGD 273
Query: 322 VIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLG 143
+AD +A E +K+ L +VLD+L RE++V++ RFG+DDGR +TL E+G
Sbjct: 274 FLADEDAPAPAEAAAFTLLKEQLIEVLDTLTDREQKVLKLRFGLDDGRARTLEEVGREFN 333
Query: 142 VSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
V+RERIR IE+ A RKL++ R++ L+ YL
Sbjct: 334 VTRERIRQIEAKALRKLRHPSRSKKLRDYL 363
[245][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 108 bits (271), Expect = 2e-22
Identities = 57/144 (39%), Positives = 89/144 (61%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+A+ LS ++ ++ + P SLE IG + + I D +
Sbjct: 223 RQLLLELGREPTPEEIAKEMELSTDKVREIMKISQEPVSLETPIGEENDSNLGDFIEDQD 282
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A + + +K+ LE VLD+L RE+ V+R RFG++DGR +TL E+G++ GV+RERI
Sbjct: 283 ALAPADAASYELLKEQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERI 342
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ +L
Sbjct: 343 RQIEAKALRKLRHPSRSKRLKDFL 366
[246][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 108 bits (271), Expect = 2e-22
Identities = 55/145 (37%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++Q+ + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 227 QRQMLQDLGREPMPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 286
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 287 DATSPAEHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 346
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 347 IRQIEAKALRKLRHPSRSKQLKDFL 371
[247][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
RepID=B8CXH1_HALOH
Length = 358
Score = 108 bits (271), Expect = 2e-22
Identities = 56/144 (38%), Positives = 87/144 (60%)
Frame = -3
Query: 484 KQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPE 305
+QL E GR P EE+ E G+ +++ +L + P SLE IG ++ + I D +
Sbjct: 214 RQLLQEKGREPTPEEIGEEMGMPAEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDED 273
Query: 304 AETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRERI 125
A +++ L+ VLD+L REK+V+ RFG++DGR +TL E+G+ GV+RERI
Sbjct: 274 APAPASAASFTLLREQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERI 333
Query: 124 RPIESCAFRKLKNQKRNQHLQQYL 53
R IE+ A RKL++ R++ L+ YL
Sbjct: 334 RQIEAKALRKLRHPSRSKKLKDYL 357
[248][TOP]
>UniRef100_B2VA41 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2VA41_SULSY
Length = 281
Score = 108 bits (271), Expect = 2e-22
Identities = 57/152 (37%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Frame = -3
Query: 502 RVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIN--QNLKP 329
+VKE ++L E GR P +EE+A+ S+K++ L + P SL+ +G ++
Sbjct: 129 KVKETYEKLKEELGREPTEEEIAKRLNTSVKKVKNALSIVRLPISLDMPLGEGGEEDFTL 188
Query: 328 SEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEM 149
+V++ E E++LI++ + K+LE +LD L+ REK++I+ R+G+D KTL E+GE
Sbjct: 189 LDVLSKKGTEDIEKELIEETIHKELESMLDVLDEREKEIIKMRYGLDGEEPKTLEEVGEK 248
Query: 148 LGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 53
LG+SRER+R +E A +KLK +HL+ +L
Sbjct: 249 LGISRERVRQLEQRALKKLKAVALKKHLKDFL 280
[249][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 108 bits (271), Expect = 2e-22
Identities = 55/145 (37%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++Q+ + GR P EE+ + +++ +L + P SLE IG + + I D
Sbjct: 227 QRQMLQDLGREPMPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ 286
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL E+G++ GV+RER
Sbjct: 287 DATSPAEHAAYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRER 346
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 347 IRQIEAKALRKLRHPSRSKQLKDFL 371
[250][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
RepID=A8U8N7_9LACT
Length = 373
Score = 108 bits (271), Expect = 2e-22
Identities = 56/145 (38%), Positives = 89/145 (61%)
Frame = -3
Query: 487 RKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADP 308
++QL + GR P EE+ L +++ +L + P SLE IG + + I D
Sbjct: 228 QRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDH 287
Query: 307 EAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLPEIGEMLGVSRER 128
+A + E + +K+ LE VLD+L RE+ V+R RFG+DDGR +TL ++G++ GV+RER
Sbjct: 288 DATSPAENAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRER 347
Query: 127 IRPIESCAFRKLKNQKRNQHLQQYL 53
IR IE+ A RKL++ R++ L+ +L
Sbjct: 348 IRQIEAKALRKLRHPSRSKQLKDFL 372