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[1][TOP]
>UniRef100_B2B9K0 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B2B9K0_GOSHI
Length = 1110
Score = 149 bits (376), Expect = 1e-34
Identities = 73/115 (63%), Positives = 85/115 (73%), Gaps = 3/115 (2%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGG---DDAYAKASAWYYVTYHHR 373
MKMS+SFTK+RDAE+I+M VRSLRKEAR WF++ DDAYAKASAWYYVTYHH
Sbjct: 996 MKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHS 1055
Query: 372 YWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNADPSLEYRFSHRLHLN 208
YWG Y+EGMNRD +LSFPWCVY L+ I+KEK A SLE+RF HL+
Sbjct: 1056 YWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHLH 1110
[2][TOP]
>UniRef100_B9HJH7 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH7_POPTR
Length = 1133
Score = 148 bits (373), Expect = 3e-34
Identities = 73/116 (62%), Positives = 87/116 (75%), Gaps = 4/116 (3%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGG---GGDDAYAKASAWYYVTYHHR 373
MKMSKSFTK+RDAEAI M VRSL+KEAR WF++ G DD AKASAWY+VTYHH
Sbjct: 1018 MKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1077
Query: 372 YWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNAD-PSLEYRFSHRLHLN 208
YWGCY+EGMNRD +LSFPWCVY L+ I++ A RR+ PS+E +FS LHL+
Sbjct: 1078 YWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHLS 1133
[3][TOP]
>UniRef100_B3SND7 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B3SND7_GOSHI
Length = 1110
Score = 147 bits (372), Expect = 4e-34
Identities = 74/115 (64%), Positives = 85/115 (73%), Gaps = 3/115 (2%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGG---DDAYAKASAWYYVTYHHR 373
MKMS+SFTK+RDAEAI+M VRSLRKEAR WF++ DDAYAKASAWYYVTYH
Sbjct: 996 MKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPS 1055
Query: 372 YWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNADPSLEYRFSHRLHLN 208
YWG Y+EGMNRD +LSFPWCVY L+ I+KEK A SLE+RF LHL+
Sbjct: 1056 YWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHLH 1110
[4][TOP]
>UniRef100_UPI000198295F PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI000198295F
Length = 1109
Score = 130 bits (327), Expect = 6e-29
Identities = 60/94 (63%), Positives = 72/94 (76%), Gaps = 3/94 (3%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGG---GGDDAYAKASAWYYVTYHHR 373
MKMSKSF KR+DAEAI + VRSLRKEAR WF+ G G DD YA ASAWY+VTYH
Sbjct: 1006 MKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPY 1065
Query: 372 YWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEKIA 271
YWGCY+EGM D +LSFPWCVY L+ I+++K++
Sbjct: 1066 YWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMS 1099
[5][TOP]
>UniRef100_A7P3W3 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W3_VITVI
Length = 1076
Score = 130 bits (327), Expect = 6e-29
Identities = 60/94 (63%), Positives = 72/94 (76%), Gaps = 3/94 (3%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGG---GGDDAYAKASAWYYVTYHHR 373
MKMSKSF KR+DAEAI + VRSLRKEAR WF+ G G DD YA ASAWY+VTYH
Sbjct: 973 MKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPY 1032
Query: 372 YWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEKIA 271
YWGCY+EGM D +LSFPWCVY L+ I+++K++
Sbjct: 1033 YWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMS 1066
[6][TOP]
>UniRef100_A5ATA5 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5ATA5_VITVI
Length = 697
Score = 130 bits (327), Expect = 6e-29
Identities = 60/94 (63%), Positives = 72/94 (76%), Gaps = 3/94 (3%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGG---GGDDAYAKASAWYYVTYHHR 373
MKMSKSF KR+DAEAI + VRSLRKEAR WF+ G G DD YA ASAWY+VTYH
Sbjct: 550 MKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPY 609
Query: 372 YWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEKIA 271
YWGCY+EGM D +LSFPWCVY L+ I+++K++
Sbjct: 610 YWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMS 643
[7][TOP]
>UniRef100_Q75ZN6 RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata
RepID=Q75ZN6_VIGUN
Length = 257
Score = 128 bits (322), Expect = 2e-28
Identities = 60/95 (63%), Positives = 73/95 (76%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
+K+SK F KRRDAEAI V SLRK+AR WF++ G GDD YAKASAWY+VTYH YWG
Sbjct: 165 IKLSKCFNKRRDAEAINKAVTSLRKDARSWFNE--GNNGDDEYAKASAWYHVTYHPSYWG 222
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRR 259
CY++GM RD YLSFPWCV+ L+ I+K+ +NRR
Sbjct: 223 CYNQGMGRDHYLSFPWCVFPQLLQIKKK--VFNRR 255
[8][TOP]
>UniRef100_A7P3W5 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W5_VITVI
Length = 1121
Score = 128 bits (322), Expect = 2e-28
Identities = 63/114 (55%), Positives = 80/114 (70%), Gaps = 3/114 (2%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFH---DSRGGGGDDAYAKASAWYYVTYHHR 373
M+MSKSF +R+DAEAI + V+SLRKEAR WF+ DD YAKASAWY+VTYH
Sbjct: 1008 MRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPD 1067
Query: 372 YWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNADPSLEYRFSHRLHL 211
YWGCY+EGM+RD +LSFPWCVY L+ +++K++ + SLE R S L L
Sbjct: 1068 YWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLS-SLERRLSQGLRL 1120
[9][TOP]
>UniRef100_A5AM83 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5AM83_VITVI
Length = 654
Score = 128 bits (322), Expect = 2e-28
Identities = 63/114 (55%), Positives = 80/114 (70%), Gaps = 3/114 (2%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFH---DSRGGGGDDAYAKASAWYYVTYHHR 373
M+MSKSF +R+DAEAI + V+SLRKEAR WF+ DD YAKASAWY+VTYH
Sbjct: 541 MRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPD 600
Query: 372 YWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNADPSLEYRFSHRLHL 211
YWGCY+EGM+RD +LSFPWCVY L+ +++K++ + SLE R S L L
Sbjct: 601 YWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLS-SLERRLSQGLRL 653
[10][TOP]
>UniRef100_Q6L3W8 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3W8_SOLDE
Length = 1139
Score = 123 bits (309), Expect = 8e-27
Identities = 63/112 (56%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI++ VR+LRKEAR WF R DD KASAWY+VTYH YWG
Sbjct: 1030 MKTSKTFDRRKDAEAISIAVRALRKEARTWF--KRRNDIDDMLPKASAWYHVTYHPTYWG 1087
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNAD-PSLEYRFSHRLHL 211
CY++G+ RD ++SFPWCVY L+ I+KEK A NR + SL + SH+L L
Sbjct: 1088 CYNQGLKRDHFISFPWCVYDQLIQIKKEK-ALNRPVLNLSSLRAQLSHKLVL 1138
[11][TOP]
>UniRef100_Q6L3P6 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P6_SOLDE
Length = 1180
Score = 123 bits (309), Expect = 8e-27
Identities = 63/112 (56%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI++ VR+LRKEAR WF R DD KASAWY+VTYH YWG
Sbjct: 1071 MKASKTFDRRKDAEAISVAVRALRKEARTWF--KRRNDIDDMLPKASAWYHVTYHPTYWG 1128
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNAD-PSLEYRFSHRLHL 211
CY++G+ RD ++SFPWCVY L+ I+KEK A NR + SL + SH+L L
Sbjct: 1129 CYNQGLKRDHFISFPWCVYDQLIQIKKEK-ALNRPVLNLSSLRAQLSHKLVL 1179
[12][TOP]
>UniRef100_Q6L3V2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum demissum
RepID=Q6L3V2_SOLDE
Length = 963
Score = 123 bits (308), Expect = 1e-26
Identities = 63/112 (56%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI++ VR+LRKEAR WF R DD KASAWY+VTYH YWG
Sbjct: 854 MKASKTFDRRKDAEAISVAVRALRKEARTWF--KRRNDIDDMLPKASAWYHVTYHPTYWG 911
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNAD-PSLEYRFSHRLHL 211
CY++G+ RD ++SFPWCVY L+ I+KEK A NR + SL + SH+L L
Sbjct: 912 CYNQGLKRDHFISFPWCVYDQLIQIKKEK-ARNRPVLNLSSLRAQLSHKLVL 962
[13][TOP]
>UniRef100_A4UV17 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV17_SOLTU
Length = 1115
Score = 123 bits (308), Expect = 1e-26
Identities = 63/112 (56%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI++ VR+LRKEAR WF R DD KASAWY+VTYH YWG
Sbjct: 1006 MKASKTFDRRKDAEAISVAVRALRKEARTWF--KRRNDIDDMLPKASAWYHVTYHPTYWG 1063
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNAD-PSLEYRFSHRLHL 211
CY++G+ RD ++SFPWCVY L+ I+KEK A NR + SL + SH+L L
Sbjct: 1064 CYNQGLKRDHFISFPWCVYDQLIQIKKEK-ARNRPVLNLSSLRAQLSHKLVL 1114
[14][TOP]
>UniRef100_Q9ZR58 RNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum
RepID=Q9ZR58_SOLLC
Length = 1114
Score = 120 bits (300), Expect = 8e-26
Identities = 62/112 (55%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI++ VR+LRKEAR WF R DD KASAWY+VTYH YWG
Sbjct: 1005 MKASKTFDRRKDAEAISVAVRALRKEARAWF--KRRNDIDDMLPKASAWYHVTYHPTYWG 1062
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNAD-PSLEYRFSHRLHL 211
CY++G+ R ++SFPWCVY L+ I+K+K A NR + SL + SHRL L
Sbjct: 1063 CYNQGLKRAHFISFPWCVYDQLIQIKKDK-ARNRPVLNLSSLRAQLSHRLVL 1113
[15][TOP]
>UniRef100_Q6L447 RNA-directed RNA polymerase-like, putative n=1 Tax=Solanum demissum
RepID=Q6L447_SOLDE
Length = 1137
Score = 120 bits (300), Expect = 8e-26
Identities = 54/89 (60%), Positives = 68/89 (76%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI++ VR+LRKEAR WF R DD KASAWY+VTYH YWG
Sbjct: 1028 MKTSKTFDRRKDAEAISIAVRALRKEARTWF--KRRNDIDDMLPKASAWYHVTYHPTYWG 1085
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
CY++G+ RD ++SFPWCVY L+ I+KEK
Sbjct: 1086 CYNQGLKRDHFISFPWCVYDQLIQIKKEK 1114
[16][TOP]
>UniRef100_Q6L3P3 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P3_SOLDE
Length = 1021
Score = 120 bits (300), Expect = 8e-26
Identities = 54/89 (60%), Positives = 68/89 (76%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI++ VR+LRKEAR WF R DD KASAWY+VTYH YWG
Sbjct: 912 MKTSKTFDRRKDAEAISIAVRALRKEARTWF--KRRNDIDDMLPKASAWYHVTYHPTYWG 969
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
CY++G+ RD ++SFPWCVY L+ I+KEK
Sbjct: 970 CYNQGLKRDHFISFPWCVYDQLIQIKKEK 998
[17][TOP]
>UniRef100_Q0KIR2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum demissum
RepID=Q0KIR2_SOLDE
Length = 963
Score = 120 bits (300), Expect = 8e-26
Identities = 54/89 (60%), Positives = 68/89 (76%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI++ VR+LRKEAR WF R DD KASAWY+VTYH YWG
Sbjct: 854 MKTSKTFDRRKDAEAISIAVRALRKEARTWF--KRHNDIDDMLPKASAWYHVTYHPTYWG 911
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
CY++G+ RD ++SFPWCVY L+ I+KEK
Sbjct: 912 CYNQGLKRDHFISFPWCVYDQLIQIKKEK 940
[18][TOP]
>UniRef100_Q0KIK9 RNA-directed RNA polymerase, putative n=1 Tax=Solanum tuberosum
RepID=Q0KIK9_SOLTU
Length = 1050
Score = 120 bits (300), Expect = 8e-26
Identities = 54/89 (60%), Positives = 68/89 (76%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI++ VR+LRKEAR WF R DD KASAWY+VTYH YWG
Sbjct: 941 MKTSKTFDRRKDAEAISIAVRALRKEARTWF--KRRNDIDDMLPKASAWYHVTYHPTYWG 998
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
CY++G+ RD ++SFPWCVY L+ I+KEK
Sbjct: 999 CYNQGLKRDHFISFPWCVYDQLIQIKKEK 1027
[19][TOP]
>UniRef100_A4UBI7 Putative RNA-directed RNA polymerase 1 n=1 Tax=Nicotiana attenuata
RepID=A4UBI7_9SOLA
Length = 1044
Score = 119 bits (299), Expect = 1e-25
Identities = 55/89 (61%), Positives = 67/89 (75%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI + VRSLRKEAR WF + DD AKASAWY+VTYHH YWG
Sbjct: 935 MKASKTFDRRKDAEAIGVAVRSLRKEARTWF--KKRSDIDDMLAKASAWYHVTYHHTYWG 992
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
Y+EG+ RD ++SFPWCVY L+ I+K K
Sbjct: 993 LYNEGLRRDHFISFPWCVYDQLIQIKKAK 1021
[20][TOP]
>UniRef100_Q9ZRY7 RNA-directed RNA polymerase n=1 Tax=Nicotiana tabacum
RepID=Q9ZRY7_TOBAC
Length = 1116
Score = 119 bits (297), Expect = 2e-25
Identities = 55/89 (61%), Positives = 66/89 (74%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI + VR LRKEAR WF R DD AKASAWY+VTYHH YWG
Sbjct: 1007 MKASKTFDRRKDAEAIGVAVRCLRKEARAWF--KRRSDIDDMLAKASAWYHVTYHHTYWG 1064
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
Y+EG+ RD ++SFPWCVY L+ I+K K
Sbjct: 1065 LYNEGLKRDHFISFPWCVYDQLIQIKKAK 1093
[21][TOP]
>UniRef100_C1I213 RNA-dependent RNA polymerase n=1 Tax=Nicotiana glutinosa
RepID=C1I213_NICGU
Length = 1117
Score = 119 bits (297), Expect = 2e-25
Identities = 54/89 (60%), Positives = 67/89 (75%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DA+AI + VRSLRKEAR WF R DD AKASAWY+VTYHH YWG
Sbjct: 1008 MKASKTFDRRKDADAIGVAVRSLRKEARTWF--KRRSDIDDMLAKASAWYHVTYHHTYWG 1065
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
Y+EG+ RD ++SFPWC+Y L+ I+K K
Sbjct: 1066 FYNEGLKRDHFISFPWCIYDQLIQIKKAK 1094
[22][TOP]
>UniRef100_B9HJH5 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH5_POPTR
Length = 1139
Score = 118 bits (295), Expect = 3e-25
Identities = 59/107 (55%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK+ KSF K+RD ++I +RSLRK+AR WF +S DD YAKASAWYYVTYH YWG
Sbjct: 1028 MKVGKSFDKKRDFDSINYSIRSLRKQARAWFDES-DNSPDDLYAKASAWYYVTYHPSYWG 1086
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEK-IAWNRRNADPSLEYRFS 226
Y+EGMNR +LSFPWC Y L+ I+K K + + SL +RFS
Sbjct: 1087 RYNEGMNRVHFLSFPWCFYDKLIDIKKGKALGGGGASRLTSLVHRFS 1133
[23][TOP]
>UniRef100_C7F747 Putative RNA-dependent RNA polymerase n=1 Tax=Zea mays
RepID=C7F747_MAIZE
Length = 1108
Score = 113 bits (283), Expect = 8e-24
Identities = 55/89 (61%), Positives = 68/89 (76%), Gaps = 2/89 (2%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHD-SRGGGGDDAY-AKASAWYYVTYHHRY 370
+KM+K+FTK DA+AI M VRSLRKEAR WF++ S G G DA AKASAWY+VTYH +Y
Sbjct: 1005 LKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEMSTGEDGQDAMEAKASAWYHVTYHQQY 1064
Query: 369 WGCYDEGMNRDPYLSFPWCVYSLLVPIQK 283
WG Y+EG +R +SFPWCVY LV I++
Sbjct: 1065 WGSYNEGYDRPHLISFPWCVYDKLVAIKQ 1093
[24][TOP]
>UniRef100_Q9ZRX3 RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida
RepID=Q9ZRX3_PETHY
Length = 775
Score = 113 bits (282), Expect = 1e-23
Identities = 52/79 (65%), Positives = 60/79 (75%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +RRDAEAI + VRSLRKEAR WF R DD AKASAWY+V YH YWG
Sbjct: 698 MKASKTFDRRRDAEAIGVAVRSLRKEARTWF--KRRSDIDDLLAKASAWYHVAYHPTYWG 755
Query: 363 CYDEGMNRDPYLSFPWCVY 307
CY+EG+ RD ++SFPWCVY
Sbjct: 756 CYNEGLKRDHFISFPWCVY 774
[25][TOP]
>UniRef100_Q6RFI0 RNA-directed RNA polymerase 1 n=1 Tax=Hordeum vulgare subsp. vulgare
RepID=Q6RFI0_HORVD
Length = 1115
Score = 112 bits (280), Expect = 2e-23
Identities = 53/94 (56%), Positives = 69/94 (73%), Gaps = 5/94 (5%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFH----DSRGGGGDDAYAKASAWYYVTYHH 376
+KM+K+FTK+ DA+AI + V+SLRKEAR WF D G G AKASAWY+VTYH
Sbjct: 1002 LKMAKNFTKKSDADAIRLAVKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHP 1061
Query: 375 RYWGCYDEGMNRDPYL-SFPWCVYSLLVPIQKEK 277
+YWGCY+EG + P+L SFPWCVY L+ I+++K
Sbjct: 1062 QYWGCYNEGYDHRPHLISFPWCVYDKLILIKQKK 1095
[26][TOP]
>UniRef100_B5M060 RNA-directed RNA polymerase 1b n=1 Tax=Hordeum vulgare
RepID=B5M060_HORVU
Length = 1115
Score = 110 bits (276), Expect = 5e-23
Identities = 52/94 (55%), Positives = 69/94 (73%), Gaps = 5/94 (5%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFH----DSRGGGGDDAYAKASAWYYVTYHH 376
+KM+K+FTK+ DA+AI + V+SLRKEAR WF D G G AKASAWY+VTYH
Sbjct: 1002 LKMAKNFTKKSDADAIRLAVKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHP 1061
Query: 375 RYWGCYDEGMNRDPYL-SFPWCVYSLLVPIQKEK 277
+YWGCY++G + P+L SFPWCVY L+ I+++K
Sbjct: 1062 QYWGCYNKGYDHRPHLISFPWCVYDKLILIKQKK 1095
[27][TOP]
>UniRef100_Q9LQV2 F10B6.19 n=1 Tax=Arabidopsis thaliana RepID=Q9LQV2_ARATH
Length = 1107
Score = 110 bits (274), Expect = 9e-23
Identities = 60/109 (55%), Positives = 72/109 (66%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
M+MSKSFTKRRDAE+I VR+LRKE F+ S + A KASAWY+VTYH YWG
Sbjct: 1001 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENESA--KASAWYHVTYHSSYWG 1058
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNADPSLEYRFSHRL 217
Y+EG+NRD +LSF WCVY LV I+K + RR +LE R H L
Sbjct: 1059 LYNEGLNRDHFLSFAWCVYDKLVRIKKTNL--GRRQRQETLE-RLDHVL 1104
[28][TOP]
>UniRef100_Q8H1K9 RNA-dependent RNA polymerase 1 n=1 Tax=Arabidopsis thaliana
RepID=Q8H1K9_ARATH
Length = 1107
Score = 110 bits (274), Expect = 9e-23
Identities = 60/109 (55%), Positives = 72/109 (66%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
M+MSKSFTKRRDAE+I VR+LRKE F+ S + A KASAWY+VTYH YWG
Sbjct: 1001 MRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENESA--KASAWYHVTYHSSYWG 1058
Query: 363 CYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNADPSLEYRFSHRL 217
Y+EG+NRD +LSF WCVY LV I+K + RR +LE R H L
Sbjct: 1059 LYNEGLNRDHFLSFAWCVYDKLVRIKKTNL--GRRQRQETLE-RLDHVL 1104
[29][TOP]
>UniRef100_B9F2V8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group
RepID=B9F2V8_ORYSJ
Length = 1027
Score = 109 bits (273), Expect = 1e-22
Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 4/93 (4%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFH----DSRGGGGDDAYAKASAWYYVTYHH 376
+KM+K+FTK+ DA+AI + VRSLRKEAR F D G G D + AKASAWY+VTYH
Sbjct: 917 LKMAKNFTKKSDADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHP 976
Query: 375 RYWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
+WGCY+EG R ++SFPWC+Y L+ I++ +
Sbjct: 977 EFWGCYNEGYERPHFISFPWCIYEKLLRIKQRR 1009
[30][TOP]
>UniRef100_A2X9D0 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2X9D0_ORYSI
Length = 1067
Score = 109 bits (273), Expect = 1e-22
Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 4/93 (4%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFH----DSRGGGGDDAYAKASAWYYVTYHH 376
+KM+K+FTK+ DA+AI + VRSLRKEAR F D G G D + AKASAWY+VTYH
Sbjct: 957 LKMAKNFTKKSDADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHP 1016
Query: 375 RYWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
+WGCY+EG R ++SFPWC+Y L+ I++ +
Sbjct: 1017 EFWGCYNEGYERPHFISFPWCIYEKLLRIKQRR 1049
[31][TOP]
>UniRef100_Q0DXS3 Probable RNA-dependent RNA polymerase 1 n=1 Tax=Oryza sativa
Japonica Group RepID=RDR1_ORYSJ
Length = 740
Score = 109 bits (273), Expect = 1e-22
Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 4/93 (4%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFH----DSRGGGGDDAYAKASAWYYVTYHH 376
+KM+K+FTK+ DA+AI + VRSLRKEAR F D G G D + AKASAWY+VTYH
Sbjct: 630 LKMAKNFTKKSDADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHP 689
Query: 375 RYWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
+WGCY+EG R ++SFPWC+Y L+ I++ +
Sbjct: 690 EFWGCYNEGYERPHFISFPWCIYEKLLRIKQRR 722
[32][TOP]
>UniRef100_B9HVU2 Rna-dependent RNA polymerase (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9HVU2_POPTR
Length = 1102
Score = 107 bits (268), Expect = 4e-22
Identities = 49/88 (55%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGG-DDAYAKASAWYYVTYHHRYW 367
M+M +SF K++D E I V SLRK+AR WF++S DD Y KASAWY+VTYH R+W
Sbjct: 1015 MRMGRSFDKKKDLEGINFSVSSLRKQARAWFNESGSKESPDDVYRKASAWYHVTYHPRFW 1074
Query: 366 GCYDEGMNRDPYLSFPWCVYSLLVPIQK 283
G Y+EGM+R +LSFPWCV+ L I+K
Sbjct: 1075 GLYNEGMDRVHFLSFPWCVHDKLFEIKK 1102
[33][TOP]
>UniRef100_Q6RFH9 RNA-directed RNA polymerase 2 n=1 Tax=Hordeum vulgare subsp. vulgare
RepID=Q6RFH9_HORVD
Length = 1115
Score = 104 bits (259), Expect = 5e-21
Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 4/93 (4%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDD----AYAKASAWYYVTYHH 376
+KM+K+FTK DA+AI + V+SLRKEAR WF D D +YAKASAWY+VTYH
Sbjct: 1003 LKMAKNFTKSSDADAIRLAVKSLRKEARSWFSDMSADESGDVHEASYAKASAWYHVTYHP 1062
Query: 375 RYWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
Y+GCY++ R +SFPWCVY L+ I++ K
Sbjct: 1063 EYYGCYNKIYERPHLISFPWCVYDKLLHIKQRK 1095
[34][TOP]
>UniRef100_B5M059 RNA-directed RNA polymerase 1a (Fragment) n=1 Tax=Hordeum vulgare
RepID=B5M059_HORVU
Length = 1114
Score = 104 bits (259), Expect = 5e-21
Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 4/93 (4%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDD----AYAKASAWYYVTYHH 376
+KM+K+FTK DA+AI + V+SLRKEAR WF D D +YAKASAWY+VTYH
Sbjct: 1003 LKMAKNFTKSSDADAIRLAVKSLRKEARSWFSDMSADESGDVHEASYAKASAWYHVTYHP 1062
Query: 375 RYWGCYDEGMNRDPYLSFPWCVYSLLVPIQKEK 277
Y+GCY++ R +SFPWCVY L+ I++ K
Sbjct: 1063 EYYGCYNKIYERPHLISFPWCVYDKLLHIKQRK 1095
[35][TOP]
>UniRef100_C5XZ94 Putative uncharacterized protein Sb04g028630 n=1 Tax=Sorghum bicolor
RepID=C5XZ94_SORBI
Length = 1114
Score = 103 bits (258), Expect = 6e-21
Identities = 53/103 (51%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDD--AYAKASAWYYVTYHHRY 370
+KM+K+FTK DA+AI M VRSLRKEAR WF++ D AKASAWY+VTY +Y
Sbjct: 1005 LKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEMSTSEDDQDATEAKASAWYHVTYDPQY 1064
Query: 369 WGCYDEGMNRDPYLSFPWCVYSLLVPIQKEKIAWNRRNADPSL 241
WG Y+EG +R +SFPWCVY LV I++ + + + DP+L
Sbjct: 1065 WGNYNEGYDRPHLISFPWCVYDKLVIIKQRRNFFTQ--MDPNL 1105
[36][TOP]
>UniRef100_A4UV46 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV46_SOLTU
Length = 1065
Score = 83.2 bits (204), Expect = 1e-14
Identities = 39/63 (61%), Positives = 47/63 (74%)
Frame = -1
Query: 543 MKMSKSFTKRRDAEAITMXVRSLRKEARPWFHDSRGGGGDDAYAKASAWYYVTYHHRYWG 364
MK SK+F +R+DAEAI++ VR+LRKEAR WF R DD KASAWY+VTYH YWG
Sbjct: 1005 MKTSKTFDRRKDAEAISIAVRALRKEARTWF--KRRNDIDDMLPKASAWYHVTYHPTYWG 1062
Query: 363 CYD 355
CY+
Sbjct: 1063 CYN 1065
[37][TOP]
>UniRef100_A9T7J6 RNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9T7J6_PHYPA
Length = 843
Score = 64.7 bits (156), Expect = 4e-09
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Frame = -1
Query: 543 MKMSKSFTKRRD--AEAITMXVRSLRKEARPWFHDSRGGG-GDDAYAKASAWYYVTYHHR 373
+ +++ + KRR+ E I VRSL EAR F ++ DD YAKASAWY+VTYH
Sbjct: 748 LNLARQYVKRREDVVERIRDAVRSLINEARQRFDENADDMVDDDIYAKASAWYHVTYHPE 807
Query: 372 YWGCYDEGMNRDPYLSFPWCVYSLLVPIQK 283
+ G +SFPW +Y++L+ I+K
Sbjct: 808 HIKVSATGRREVHLISFPWVIYNVLLQIKK 837