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[1][TOP]
>UniRef100_A2Q624 Ribonuclease H n=1 Tax=Medicago truncatula RepID=A2Q624_MEDTR
Length = 235
Score = 70.9 bits (172), Expect = 4e-11
Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Frame = -2
Query: 428 ILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIVGMIHDLLRF 249
IL E+ + +GL+L W G++ ++ +DS + LVQ + H+Y ++ I LLR
Sbjct: 119 ILHVEISGLYHGLKLCWDIGIKHVVCHSDSTTVVDLVQKDLNVHHKYGNLIMAIKKLLRR 178
Query: 248 DWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLL-EDPLQAALPLLADDYCGTLFMR 81
DW V+ R L EGNA D LAK G L +L E P A LLA D G F+R
Sbjct: 179 DWVVSLRHTLCEGNAAADFLAKKGALSDTSLVILNEAPPDIAFVLLA-DAVGVKFVR 234
[2][TOP]
>UniRef100_Q2HTL5 Ribonuclease H (Fragment) n=1 Tax=Medicago truncatula
RepID=Q2HTL5_MEDTR
Length = 233
Score = 67.0 bits (162), Expect = 6e-10
Identities = 42/118 (35%), Positives = 61/118 (51%)
Frame = -2
Query: 434 SEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIVGMIHDLL 255
++IL EL + GL+L V ++ ++DS LA++L+ R+H YAA++ I DLL
Sbjct: 116 ADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQNIKDLL 175
Query: 254 RFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYCGTLFMR 81
D ++ LREGN D AK G L + + P LPLL D G F+R
Sbjct: 176 N-DRNISLHHTLREGNQCADFFAKFGANSDAALVVHQSPPADLLPLLRADALGIYFVR 232
[3][TOP]
>UniRef100_A2Q681 Ribonuclease H n=1 Tax=Medicago truncatula RepID=A2Q681_MEDTR
Length = 170
Score = 66.2 bits (160), Expect = 1e-09
Identities = 46/120 (38%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
FS G L EL +L GLQL W G R + + D + AL L+ +H +A ++
Sbjct: 44 FSESCGRVSNLLVELYAILNGLQLAWDLGFRIITLEPDYKSALDLILDNDTTYHPHAIVL 103
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKL-LEDPLQAALPLLADDYC 99
G I L+ DW + F LREGN D LAK + LKL + P Q A LLAD C
Sbjct: 104 GRIRTLMSRDWSLLFNHTLREGNECADWLAKYDAQSDVSLKLWVSPPPQFAHVLLADASC 163
[4][TOP]
>UniRef100_A4PSD6 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
n=1 Tax=Medicago truncatula RepID=A4PSD6_MEDTR
Length = 869
Score = 65.5 bits (158), Expect = 2e-09
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Frame = -2
Query: 434 SEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIVGMIHDLL 255
S+IL EL + G+ G+ M V++DS L+++L+ +FH +AA++ I D L
Sbjct: 752 SDILLAELTAIYDGINTAIDMGITDMAVYSDSLLSINLITTTSSKFHIHAALIQDIRDKL 811
Query: 254 RFDWQVNFRL--ILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYCGTLFMR 81
NF L LREGN D LAK G + + + P PLL +D GTLF+R
Sbjct: 812 SLR---NFSLNHTLREGNQSADYLAKLGAMSDVNVLIHQSPPDELCPLLKNDAAGTLFLR 868
[5][TOP]
>UniRef100_A2Q4M4 Ribonuclease H n=1 Tax=Medicago truncatula RepID=A2Q4M4_MEDTR
Length = 147
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/136 (28%), Positives = 70/136 (51%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
FS ++G+S E++ + GL L + G ++ ++DS+ + ++ ++H YA+ +
Sbjct: 10 FSSYLGLSNNTYAEIIAIYQGLHLARNFGCTYIICYSDSKGGIDILAKPVKKYHCYASAI 69
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYCG 96
I DL+ +W+V LREGNA D LAK G+ + + KL P + +L +D
Sbjct: 70 ANIIDLMNLEWEVKLCHSLREGNASADFLAKWGSSNDIKWKLRNTPPEDLKAILLNDSMR 129
Query: 95 TLFMRR*RSNLVLFSF 48
T ++ V+F F
Sbjct: 130 TFVF----NSFVVFLF 141
[6][TOP]
>UniRef100_Q1SMZ7 Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q1SMZ7_MEDTR
Length = 438
Score = 62.8 bits (151), Expect = 1e-08
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = -2
Query: 455 FSIFVGIS-EILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAI 279
FS F+ S +IL+ EL + L + + ++ ++DS LA++L+ R+H YA +
Sbjct: 313 FSGFIPNSTDILQAELTAIHQSLHMVIDSNMNDVMCYSDSLLAVNLIMNDTPRYHTYAVL 372
Query: 278 VGMIHDLLRFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYC 99
+ I DLL + LREGN D AK G L + + P LPLL D
Sbjct: 373 IQNIKDLLSVR-NITLHHTLREGNQCADFFAKLGANSDVHLVVHQSPPADLLPLLRADAI 431
Query: 98 GTLFMR 81
GT+F+R
Sbjct: 432 GTVFIR 437
[7][TOP]
>UniRef100_Q9LQJ0 F28G4.15 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LQJ0_ARATH
Length = 272
Score = 61.6 bits (148), Expect = 3e-08
Identities = 35/125 (28%), Positives = 57/125 (45%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
FS+ +GI EL YGL + W +GV ++ + DS++ + ++ G D H + +V
Sbjct: 144 FSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLV 203
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYCG 96
+ H LL DW V + RE N + D LA L + ++ DD G
Sbjct: 204 RLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVMSIVHDDVAG 263
Query: 95 TLFMR 81
+ + R
Sbjct: 264 SAYPR 268
[8][TOP]
>UniRef100_Q9LNS0 F1L3.4 n=1 Tax=Arabidopsis thaliana RepID=Q9LNS0_ARATH
Length = 253
Score = 61.6 bits (148), Expect = 3e-08
Identities = 35/125 (28%), Positives = 57/125 (45%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
FS+ +GI EL YGL + W +GV ++ + DS++ + ++ G D H + +V
Sbjct: 125 FSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLV 184
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYCG 96
+ H LL DW V + RE N + D LA L + ++ DD G
Sbjct: 185 RLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVMSIVHDDVAG 244
Query: 95 TLFMR 81
+ + R
Sbjct: 245 SAYPR 249
[9][TOP]
>UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like n=1 Tax=Arabidopsis
thaliana RepID=Q9FG26_ARATH
Length = 676
Score = 59.7 bits (143), Expect = 1e-07
Identities = 38/128 (29%), Positives = 58/128 (45%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
F++ +G+ EL + YGL + W +G RR+ + DS L + +Q G H A +V
Sbjct: 548 FALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLV 607
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYCG 96
+ H + DW V + RE N + D LA LL+ + +L +D G
Sbjct: 608 RLCHGFISKDWIVRITHVYREANRLADGLANYAFTLPFGFLLLDSCPEHVSSILLEDVMG 667
Query: 95 TLFMRR*R 72
T F R R
Sbjct: 668 TSFPRHVR 675
[10][TOP]
>UniRef100_Q9SJZ8 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=Q9SJZ8_ARATH
Length = 321
Score = 58.9 bits (141), Expect = 2e-07
Identities = 35/125 (28%), Positives = 57/125 (45%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
F++ +G+ EL + YGL + W +G RR+ + DS++ + + G H + ++
Sbjct: 193 FAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFLL 252
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYCG 96
+ +D L W V + RE N + D LA S L LLE +L DD G
Sbjct: 253 RLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLHLLESRPDVVSSILLDDVAG 312
Query: 95 TLFMR 81
+ R
Sbjct: 313 VSYPR 317
[11][TOP]
>UniRef100_B9HFN7 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HFN7_POPTR
Length = 245
Score = 58.9 bits (141), Expect = 2e-07
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
F+ +GI + EL + GLQL W +G R++ + +DS++ + L+ R + I+
Sbjct: 116 FARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNII 175
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLAKDG-TRD--SCRLKLLEDPLQAALPLLADD 105
I +L DW+V + RE N V D LA G TRD +LE+P PLL D
Sbjct: 176 MQIKGMLGRDWEVTTYHVYREANCVADWLANYGLTRDLLDRGSDVLEEPPSGLYPLLYYD 235
Query: 104 YCGTLFMR 81
G+ R
Sbjct: 236 LIGSTVTR 243
[12][TOP]
>UniRef100_Q9ZUY7 Putative reverse transcriptase n=1 Tax=Arabidopsis thaliana
RepID=Q9ZUY7_ARATH
Length = 314
Score = 58.5 bits (140), Expect = 2e-07
Identities = 26/90 (28%), Positives = 49/90 (54%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
F++ +G+ EL + YGL + W + V R+ + DS++ + +++G + H + +V
Sbjct: 186 FALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLV 245
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLA 186
+ HD + DW+V + RE N + D LA
Sbjct: 246 RLCHDFISRDWRVRISHVYREANRLADGLA 275
[13][TOP]
>UniRef100_A0MEQ4 Putative uncharacterized protein (Fragment) n=1 Tax=Arabidopsis
thaliana RepID=A0MEQ4_ARATH
Length = 315
Score = 58.5 bits (140), Expect = 2e-07
Identities = 26/90 (28%), Positives = 49/90 (54%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
F++ +G+ EL + YGL + W + V R+ + DS++ + +++G + H + +V
Sbjct: 186 FALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLV 245
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLA 186
+ HD + DW+V + RE N + D LA
Sbjct: 246 RLCHDFISRDWRVRISHVYREANRLADGLA 275
[14][TOP]
>UniRef100_Q2HVF1 Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago
truncatula RepID=Q2HVF1_MEDTR
Length = 126
Score = 57.4 bits (137), Expect = 5e-07
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = -2
Query: 443 VGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIVGMIH 264
VGIS IL E+ ++ G++L W G R+++ F DS + LV RFH YA ++ +I
Sbjct: 48 VGISNILHAEIQTLI-GIKLCWETGYRKLMCFFDSIHVVELVMKDISRFHHYANLLELIQ 106
Query: 263 DLLRFDWQVNFRLILREGNA 204
+ L DW ++ + IL +GN+
Sbjct: 107 NYLDKDWFISIQHILWDGNS 126
[15][TOP]
>UniRef100_Q1PEZ4 Putative uncharacterized protein n=1 Tax=Arabidopsis thaliana
RepID=Q1PEZ4_ARATH
Length = 314
Score = 55.8 bits (133), Expect = 1e-06
Identities = 25/90 (27%), Positives = 48/90 (53%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
F++ +G+ EL + YGL + W + V R+ + DS++ + +++ + H + +V
Sbjct: 186 FALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIXINEVHPLSFLV 245
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLA 186
+ HD + DW+V + RE N + D LA
Sbjct: 246 RLCHDFISRDWRVRISHVYREANRLADGLA 275
[16][TOP]
>UniRef100_Q2HUI8 Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HUI8_MEDTR
Length = 208
Score = 55.5 bits (132), Expect = 2e-06
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Frame = -2
Query: 455 FSIFVGIS-EILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAI 279
FS F+ S +IL EL + G + GV M ++DS L+++L+ ++H YA +
Sbjct: 83 FSGFIADSTDILLAELTAIHRGFSIASDMGVNEMACYSDSLLSINLITGQASKYHAYAVL 142
Query: 278 VGMIHDLLRFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYC 99
+ I DLL + + LREGN D +AK G + + P Q LL +D
Sbjct: 143 IQDIKDLLS-SHNFSIQHCLREGNQCADFMAKFGASSNNVCFIHPSPPQDLHVLLRNDAI 201
Query: 98 GTLFMR 81
GT F R
Sbjct: 202 GTCFPR 207
[17][TOP]
>UniRef100_B9IKN0 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IKN0_POPTR
Length = 245
Score = 55.1 bits (131), Expect = 2e-06
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
F+ + I + EL + GLQL W +G R++ + +DS++ + L+ R + I+
Sbjct: 116 FARNIDICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNII 175
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLAKDG-TRD--SCRLKLLEDPLQAALPLLADD 105
I D+L DW+V + RE N V D LA G +RD +LE+P PL D
Sbjct: 176 MQIKDMLGRDWEVTTYHVYREANCVADWLANYGLSRDLLDRGSDVLEEPPSGLYPLFYYD 235
Query: 104 YCGT 93
G+
Sbjct: 236 LIGS 239
[18][TOP]
>UniRef100_Q9FMM8 Non-LTR retroelement reverse transcriptase-like protein n=1
Tax=Arabidopsis thaliana RepID=Q9FMM8_ARATH
Length = 308
Score = 54.7 bits (130), Expect = 3e-06
Identities = 37/128 (28%), Positives = 57/128 (44%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
FS+ +G EL + YGL W K V R+ + DS+ + ++ G H + +V
Sbjct: 180 FSLNIGRCSAQHAELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLV 239
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYCG 96
+ H+ L+ DW V + RE N + D LA S + A LL +D G
Sbjct: 240 RLCHNFLQKDWLVRIVYVYREANCLADGLANYTILLSLGFHSFDFVPDAMSSLLKEDTLG 299
Query: 95 TLFMRR*R 72
+ +RR R
Sbjct: 300 STQLRRVR 307
[19][TOP]
>UniRef100_B9RSJ8 Putative uncharacterized protein n=1 Tax=Ricinus communis
RepID=B9RSJ8_RICCO
Length = 140
Score = 54.7 bits (130), Expect = 3e-06
Identities = 35/115 (30%), Positives = 54/115 (46%)
Frame = -2
Query: 425 LKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIVGMIHDLLRFD 246
L+ E LYGL+L W G +++L+ D+QL + ++ QY ++ I +L ++
Sbjct: 16 LEPESTVCLYGLRLAWLSGHKQVLMEVDNQLVVDVLSEKVAPSRQYLSLHSEIVKMLGWN 75
Query: 245 WQVNFRLILREGNAVVDLLAKDGTRDSCRLKLLEDPLQAALPLLADDYCGTLFMR 81
W V RE N D LA G + +L+ P + LL D GT F R
Sbjct: 76 WIVRINHSFREANRCADCLANTGHSFALGYHVLQAPPDQVVQLLFQDNVGTSFPR 130
[20][TOP]
>UniRef100_B9HV70 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HV70_POPTR
Length = 245
Score = 54.3 bits (129), Expect = 4e-06
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Frame = -2
Query: 455 FSIFVGISEILKXELLXMLYGLQL*WSKGVRRMLVFTDSQLALSLVQLGCDRFHQYAAIV 276
F+ +GI + EL + GLQL W +G R++ + +DS++ + L+ R + I+
Sbjct: 116 FARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNII 175
Query: 275 GMIHDLLRFDWQVNFRLILREGNAVVDLLAKDG-TRD--SCRLKLLEDPLQAALPLLADD 105
I +L +W+V + RE N V D LA G TRD +LE+ PLL D
Sbjct: 176 MQIKGMLGRNWEVTTYHVYREANCVADWLANYGLTRDLLDRGSDVLEELPSGLYPLLYYD 235
Query: 104 YCGTLFMR 81
G++ R
Sbjct: 236 LIGSIVTR 243