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[1][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 143 bits (361), Expect = 5e-33
Identities = 72/80 (90%), Positives = 77/80 (96%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YDDE+IKKAEAM KPGL+EITAKQDSFIF VE+TGAVKASQL+LN+IEILKQKLDAVRLS
Sbjct: 239 YDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLS 298
Query: 304 EDTVEADDPFGELGAHMRGG 245
EDTVEADD FGELGAHMRGG
Sbjct: 299 EDTVEADDQFGELGAHMRGG 318
[2][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 139 bits (351), Expect = 7e-32
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YDDE++KKAEAM KPGLVEI AK+DSFIF VE+TGA+KASQLVLNAI++LKQKLDAVRLS
Sbjct: 239 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLS 298
Query: 304 EDTVEADDPFGELGAHMRGG 245
EDTVEADD FGELGAHMRGG
Sbjct: 299 EDTVEADDQFGELGAHMRGG 318
[3][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 139 bits (351), Expect = 7e-32
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YDDE++KKAEAM KPGLVEI AK+DSFIF VE+TGA+KASQLVLNAI++LKQKLDAVRLS
Sbjct: 239 YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLS 298
Query: 304 EDTVEADDPFGELGAHMRGG 245
EDTVEADD FGELGAHMRGG
Sbjct: 299 EDTVEADDQFGELGAHMRGG 318
[4][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 137 bits (346), Expect = 3e-31
Identities = 69/80 (86%), Positives = 75/80 (93%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YD+E+IKKAE+M KPGLV I AK+DSFIF VE+TGA+KASQLVLNAIEILKQKLDAVRLS
Sbjct: 239 YDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLS 298
Query: 304 EDTVEADDPFGELGAHMRGG 245
EDTVEADD FGELGAHMRGG
Sbjct: 299 EDTVEADDQFGELGAHMRGG 318
[5][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 135 bits (341), Expect = 1e-30
Identities = 67/80 (83%), Positives = 75/80 (93%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YD+E+IKKAEAM KPGL+EI+ K DSFIF VE+TGAVKASQLVLNAI++LKQKLDAVRLS
Sbjct: 240 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 299
Query: 304 EDTVEADDPFGELGAHMRGG 245
+DTVEADD FGELGAHMRGG
Sbjct: 300 DDTVEADDQFGELGAHMRGG 319
[6][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 135 bits (341), Expect = 1e-30
Identities = 67/80 (83%), Positives = 75/80 (93%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YD+E+IKKAEAM KPGL+EI+ K DSFIF VE+TGAVKASQLVLNAI++LKQKLDAVRLS
Sbjct: 240 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 299
Query: 304 EDTVEADDPFGELGAHMRGG 245
+DTVEADD FGELGAHMRGG
Sbjct: 300 DDTVEADDQFGELGAHMRGG 319
[7][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 130 bits (327), Expect = 5e-29
Identities = 66/78 (84%), Positives = 72/78 (92%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YDDE+IKKAEAM K GL++I AK+DSFIF VE+TGAVKASQLVLNAIEILKQKLDAVRLS
Sbjct: 244 YDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLS 303
Query: 304 EDTVEADDPFGELGAHMR 251
+DTVEADD FGELG HMR
Sbjct: 304 DDTVEADDQFGELGVHMR 321
[8][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 128 bits (322), Expect = 2e-28
Identities = 64/80 (80%), Positives = 72/80 (90%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YD+E++KKAEAM KPGLVEI +K+DSFIF VE+TGA+KASQ+ LNAIEILK KLDAVRLS
Sbjct: 243 YDEEVLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDAVRLS 302
Query: 304 EDTVEADDPFGELGAHMRGG 245
DT EADD FGELGAHMRGG
Sbjct: 303 FDTEEADDQFGELGAHMRGG 322
[9][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 128 bits (322), Expect = 2e-28
Identities = 63/80 (78%), Positives = 73/80 (91%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YD+E+IKKAEAM KPGL+EI K DSF+F VE+TGA+KASQLVLNAI+ILKQKLDA+RLS
Sbjct: 240 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 299
Query: 304 EDTVEADDPFGELGAHMRGG 245
++TVEADD FGELGAHMR G
Sbjct: 300 DNTVEADDQFGELGAHMREG 319
[10][TOP]
>UniRef100_B9GHC8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9GHC8_POPTR
Length = 87
Score = 109 bits (272), Expect = 1e-22
Identities = 54/74 (72%), Positives = 66/74 (89%)
Frame = -2
Query: 481 DDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSE 302
DD++IKKAEA KPG+++I AK+D+F+FIV +TGA+KASQLVL+AIEILKQKLDAVRLS+
Sbjct: 12 DDKVIKKAEAKGKPGIIDIRAKEDNFVFIVGSTGAIKASQLVLDAIEILKQKLDAVRLSD 71
Query: 301 DTVEADDPFGELGA 260
D VEADD F EL A
Sbjct: 72 DIVEADDQFDELSA 85
[11][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 107 bits (266), Expect = 5e-22
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YDDE+IKKA+AM KPGL+EI AK+DSFIF VETTGA+ A +L++NAI +L+QKLDAVRL
Sbjct: 255 YDDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQ 314
Query: 304 EDTVEADDPFGELGAHMRGG 245
+D D GELGAH+ GG
Sbjct: 315 DD----DADLGELGAHLVGG 330
[12][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 104 bits (260), Expect = 3e-21
Identities = 52/79 (65%), Positives = 64/79 (81%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YDDE+IK AEA+ KPGLVEITAK+DSF+F VETTGA+ A +L++NAI +L+QKLDAVRL
Sbjct: 253 YDDEVIKHAEAIGKPGLVEITAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVRLQ 312
Query: 304 EDTVEADDPFGELGAHMRG 248
+D D GELGAH+ G
Sbjct: 313 DD----DGDLGELGAHLGG 327
[13][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 103 bits (257), Expect = 6e-21
Identities = 52/79 (65%), Positives = 63/79 (79%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YDDE+IK AEA+ KPGLVEI AK+DSFIF VETTGA+ A +L++NAI +L+QKLDAVRL
Sbjct: 253 YDDEVIKHAEALGKPGLVEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQ 312
Query: 304 EDTVEADDPFGELGAHMRG 248
+D D GELGAH+ G
Sbjct: 313 DD----DGDLGELGAHLGG 327
[14][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 70.5 bits (171), Expect = 6e-11
Identities = 31/67 (46%), Positives = 51/67 (76%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YD E +KKAE + KPGLV+I AK+D+F F VE+TGA++ ++V+NA+++L++K++ R
Sbjct: 260 YDGECLKKAEELGKPGLVDIRAKEDAFHFTVESTGALRPEEIVVNALKVLERKMEVTRGE 319
Query: 304 EDTVEAD 284
D +E +
Sbjct: 320 LDILERE 326
[15][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 67.8 bits (164), Expect = 4e-10
Identities = 32/67 (47%), Positives = 48/67 (71%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YD E +K AE M KPGLV+I AK+D+F+F VE+TGA+ +VLNA+++L KL+ +
Sbjct: 258 YDGECLKWAEDMGKPGLVDIRAKEDTFLFTVESTGALPPETIVLNALKVLDTKLEMTKSE 317
Query: 304 EDTVEAD 284
D V+++
Sbjct: 318 LDIVKSE 324
[16][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 61.6 bits (148), Expect = 3e-08
Identities = 27/60 (45%), Positives = 41/60 (68%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
YD E++KK + KPGL+++ D F FIVE+TG +K ++VL A+ IL+ KLD + +S
Sbjct: 250 YDGEVMKKVNELGKPGLIDVRPGLDCFTFIVESTGVLKVEEVVLQAVHILQSKLDTIGVS 309
[17][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 59.3 bits (142), Expect = 1e-07
Identities = 29/68 (42%), Positives = 44/68 (64%)
Frame = -2
Query: 484 YDDELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLS 305
+D E++KK M K GL++I DSF F VE+TG + A ++VL A+ IL+ KLD V
Sbjct: 233 FDGEIVKKVNEMGKHGLIDIRPCFDSFTFHVESTGVLDAEEIVLQAVHILQTKLDTVGGE 292
Query: 304 EDTVEADD 281
D +E+++
Sbjct: 293 LDMIESEN 300
[18][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 57.0 bits (136), Expect = 6e-07
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = -2
Query: 475 ELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVR 311
E KKAE+ KP LV + KQD FIF VE++GA+K +VL AI+I+K+KL ++
Sbjct: 240 ECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294
[19][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = -2
Query: 475 ELIKKAEAMXKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSED 299
EL + EA LVEI + DSFIF VE+TGA+ +++ ++A+ ILK+KL A+R++ED
Sbjct: 272 ELQRNVEAAGMAELVEIAWRDDSFIFSVESTGAIAPAKICVDAVNILKKKLLALRIAED 330