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[1][TOP]
>UniRef100_C6T7E3 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T7E3_SOYBN
Length = 291
Score = 195 bits (495), Expect = 2e-48
Identities = 97/124 (78%), Positives = 112/124 (90%)
Frame = -2
Query: 535 VSDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVS 356
VSDHGRHMKGFNR KVREPVE ++P+EED+ +SP EEE ++ EVVRTKYFDMPPLTV+
Sbjct: 171 VSDHGRHMKGFNRLKVREPVE-QLPVEEDEILSPQEEE--ESIDEVVRTKYFDMPPLTVA 227
Query: 355 EAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEPAREA 176
EAIEQL NVDH FY FRNEETGEINIVYKRKEGGYGLI+PKG+G+AEKLEP+++EPA E+
Sbjct: 228 EAIEQLENVDHDFYGFRNEETGEINIVYKRKEGGYGLIVPKGDGEAEKLEPVVLEPAIES 287
Query: 175 SLKE 164
SLKE
Sbjct: 288 SLKE 291
[2][TOP]
>UniRef100_B9SEK8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1
Tax=Ricinus communis RepID=B9SEK8_RICCO
Length = 311
Score = 181 bits (459), Expect = 3e-44
Identities = 90/124 (72%), Positives = 101/124 (81%)
Frame = -2
Query: 535 VSDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVS 356
VSDHGRHMKGFNR KVREPV V + D+ L +E E + EVVRTKYFDMPPLTVS
Sbjct: 188 VSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDEDEDYIDEVVRTKYFDMPPLTVS 247
Query: 355 EAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEPAREA 176
EAIEQL NVDH FY FRNEETGEINI+YKRK GGYG+IIPK NG+AEKLEP+++EPARE
Sbjct: 248 EAIEQLKNVDHDFYGFRNEETGEINIIYKRKAGGYGIIIPKENGKAEKLEPVVIEPAREP 307
Query: 175 SLKE 164
S+ E
Sbjct: 308 SIAE 311
[3][TOP]
>UniRef100_B9I297 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I297_POPTR
Length = 306
Score = 179 bits (455), Expect = 9e-44
Identities = 92/123 (74%), Positives = 105/123 (85%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSE 353
SDHGRHMKGFNR KVREPV +V + D++S ++E E ++ EVVRTK+FDMPPLTVSE
Sbjct: 187 SDHGRHMKGFNRLKVREPVP-QVVEGDADEVS--QQEVEDSIEEVVRTKFFDMPPLTVSE 243
Query: 352 AIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEPAREAS 173
AIEQL NVDH FY FRNEETGEINIVYKRK GGYGLIIPKGN +AE+LEPL+VEPARE+S
Sbjct: 244 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGNDEAERLEPLVVEPARESS 303
Query: 172 LKE 164
L E
Sbjct: 304 LAE 306
[4][TOP]
>UniRef100_B9IDE9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IDE9_POPTR
Length = 231
Score = 179 bits (453), Expect = 1e-43
Identities = 89/123 (72%), Positives = 103/123 (83%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSE 353
SDHGRHMKGFNR KVREP+ V ++ D++S ++E E + EVVRTKYFDMPPLTVSE
Sbjct: 111 SDHGRHMKGFNRLKVREPMHQVVVEDDADEVS--QQEDEDYIEEVVRTKYFDMPPLTVSE 168
Query: 352 AIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEPAREAS 173
AIEQL +V H FY FR+EETGEINI+YKRK GGYGLIIPKGNG+AE+LEPL+VEPARE S
Sbjct: 169 AIEQLEHVHHDFYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPS 228
Query: 172 LKE 164
L E
Sbjct: 229 LAE 231
[5][TOP]
>UniRef100_A9PHY3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa
RepID=A9PHY3_POPTR
Length = 306
Score = 179 bits (453), Expect = 1e-43
Identities = 89/123 (72%), Positives = 103/123 (83%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSE 353
SDHGRHMKGFNR KVREP+ V ++ D++S ++E E + EVVRTKYFDMPPLTVSE
Sbjct: 186 SDHGRHMKGFNRLKVREPMHQVVVEDDADEVS--QQEDEDYIEEVVRTKYFDMPPLTVSE 243
Query: 352 AIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEPAREAS 173
AIEQL +V H FY FR+EETGEINI+YKRK GGYGLIIPKGNG+AE+LEPL+VEPARE S
Sbjct: 244 AIEQLEHVHHDFYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPS 303
Query: 172 LKE 164
L E
Sbjct: 304 LAE 306
[6][TOP]
>UniRef100_UPI0001984F94 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984F94
Length = 298
Score = 167 bits (424), Expect = 3e-40
Identities = 85/124 (68%), Positives = 101/124 (81%), Gaps = 1/124 (0%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPL-EEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVS 356
SDHGRHMKGFNR KVR+P E PL EE+ D+ P +E+G+ + E+VRTKYFDMPPLTV
Sbjct: 179 SDHGRHMKGFNRLKVRDP---ETPLVEEEADVVPQKEDGDL-INEIVRTKYFDMPPLTVP 234
Query: 355 EAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEPAREA 176
EA+EQL NVDH F+ FRNEETGEINI+YKRK GGYGLIIPK NG+ E+LEP++V+ RE
Sbjct: 235 EAVEQLENVDHDFFGFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKSDREP 294
Query: 175 SLKE 164
SL E
Sbjct: 295 SLAE 298
[7][TOP]
>UniRef100_A7QEV5 Chromosome chr16 scaffold_86, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QEV5_VITVI
Length = 230
Score = 167 bits (424), Expect = 3e-40
Identities = 85/124 (68%), Positives = 101/124 (81%), Gaps = 1/124 (0%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPL-EEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVS 356
SDHGRHMKGFNR KVR+P E PL EE+ D+ P +E+G+ + E+VRTKYFDMPPLTV
Sbjct: 111 SDHGRHMKGFNRLKVRDP---ETPLVEEEADVVPQKEDGDL-INEIVRTKYFDMPPLTVP 166
Query: 355 EAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEPAREA 176
EA+EQL NVDH F+ FRNEETGEINI+YKRK GGYGLIIPK NG+ E+LEP++V+ RE
Sbjct: 167 EAVEQLENVDHDFFGFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKSDREP 226
Query: 175 SLKE 164
SL E
Sbjct: 227 SLAE 230
[8][TOP]
>UniRef100_P19954 30S ribosomal protein 1, chloroplastic n=1 Tax=Spinacia oleracea
RepID=RR30_SPIOL
Length = 302
Score = 159 bits (402), Expect = 1e-37
Identities = 81/129 (62%), Positives = 99/129 (76%), Gaps = 5/129 (3%)
Frame = -2
Query: 535 VSDHGRHMKGFNRAKVREPVEVEVPLEE-----DDDISPLEEEGEATLVEVVRTKYFDMP 371
VSDHGRHMKGFNR+KVR+P V + EE + +P+ E + + EVVRTKYFDMP
Sbjct: 175 VSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDDDFIEEVVRTKYFDMP 234
Query: 370 PLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVE 191
PLT++EA+EQL NVDH FYAFRNEETG+INI+YKRKEGGYGLIIPK +G+ EKLE L V+
Sbjct: 235 PLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-DGKTEKLESLPVQ 293
Query: 190 PAREASLKE 164
++ S E
Sbjct: 294 TDKQPSFAE 302
[9][TOP]
>UniRef100_Q9FLV3 Similarity to ribosomal protein 30S subunit n=2 Tax=Arabidopsis
thaliana RepID=Q9FLV3_ARATH
Length = 365
Score = 156 bits (395), Expect = 8e-37
Identities = 84/126 (66%), Positives = 95/126 (75%), Gaps = 3/126 (2%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPV--EVEVPLEEDDDISPLEEEGEATLV-EVVRTKYFDMPPLT 362
SDHGRHMKGFNR KVREPV V +E+ D S EEE E L+ E+VRTK F+MPPLT
Sbjct: 240 SDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPPLT 299
Query: 361 VSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEPAR 182
V+EA+EQL V H FY F+NEETGEINIVYKRKEGGYGLIIPK +G+AEK+EPL E
Sbjct: 300 VAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLN 359
Query: 181 EASLKE 164
E S E
Sbjct: 360 EHSFAE 365
[10][TOP]
>UniRef100_Q672Q2 Chloroplast-specific ribosomal protein n=1 Tax=Solanum lycopersicum
RepID=Q672Q2_SOLLC
Length = 311
Score = 154 bits (390), Expect = 3e-36
Identities = 83/128 (64%), Positives = 96/128 (75%), Gaps = 5/128 (3%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGE-----ATLVEVVRTKYFDMPP 368
SD GRHMKGF+R KVR+P + V +ED + EEE E + EVVR K FDMPP
Sbjct: 186 SDRGRHMKGFDRLKVRDPEALLV--QEDLETLSQEEEVEDDKSDGFVTEVVRKKSFDMPP 243
Query: 367 LTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEP 188
L+V+EAIEQL NVDH FY FRNEETGEINIVY+RKEGGYGLIIPK +G+ EKLEPL VEP
Sbjct: 244 LSVNEAIEQLENVDHDFYGFRNEETGEINIVYRRKEGGYGLIIPKEDGKTEKLEPLEVEP 303
Query: 187 AREASLKE 164
+E S+ E
Sbjct: 304 EKEPSIAE 311
[11][TOP]
>UniRef100_C9EFD1 Chloroplast ribosomal protein (Fragment) n=1 Tax=Solanum tuberosum
RepID=C9EFD1_SOLTU
Length = 280
Score = 149 bits (377), Expect = 9e-35
Identities = 80/119 (67%), Positives = 91/119 (76%), Gaps = 6/119 (5%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGE------ATLVEVVRTKYFDMP 371
SDHGRHMKGF+R KVR+P + V +ED + P EEE E + EVVR K FDMP
Sbjct: 158 SDHGRHMKGFDRLKVRDPEVLLV--QEDLETLPQEEEVEDDDKSDGFVTEVVRKKSFDMP 215
Query: 370 PLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMV 194
PL+V+EAIEQL NVDH FY FRNEETGEINIVY+RKEGGYGLIIPK +G+ EKLEPL V
Sbjct: 216 PLSVNEAIEQLENVDHDFYGFRNEETGEINIVYRRKEGGYGLIIPKEDGKTEKLEPLEV 274
[12][TOP]
>UniRef100_B9NGT0 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NGT0_POPTR
Length = 71
Score = 121 bits (304), Expect = 3e-26
Identities = 60/71 (84%), Positives = 63/71 (88%)
Frame = -2
Query: 376 MPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLM 197
MPPLTVSEAIEQL NVDH FY FRNEETGEINIVYKRK GGYG IIPKGN +AE+LEPL+
Sbjct: 1 MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGPIIPKGNYEAERLEPLV 60
Query: 196 VEPAREASLKE 164
VEPARE SL E
Sbjct: 61 VEPAREPSLAE 71
[13][TOP]
>UniRef100_Q84M68 Os03g0856500 protein n=3 Tax=Oryza sativa RepID=Q84M68_ORYSJ
Length = 309
Score = 110 bits (275), Expect = 6e-23
Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 12/115 (10%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVP--LEEDDD-----ISPLEE-----EGEATLVEVVRTKYFD 377
RH+KG + PV P L+ +DD + LEE + + L +VVRTK F+
Sbjct: 185 RHLKG-----TKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDTVLTKVVRTKVFE 239
Query: 376 MPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEK 212
MPPL+V EA+EQLVNVDH FYAFR+E+TGE+N++YKRKEGG+GLI+PKG+G K
Sbjct: 240 MPPLSVEEAMEQLVNVDHNFYAFRDEKTGEMNVLYKRKEGGFGLIVPKGDGHLHK 294
[14][TOP]
>UniRef100_B6TYP8 Plastid-specific 30S ribosomal protein 1 n=1 Tax=Zea mays
RepID=B6TYP8_MAIZE
Length = 309
Score = 108 bits (271), Expect = 2e-22
Identities = 52/90 (57%), Positives = 68/90 (75%), Gaps = 1/90 (1%)
Frame = -2
Query: 481 PVEVEVPLEEDD-DISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFR 305
P ++ P E DD + + E+ E L +VVRTK F+MPPLTV EA+EQL NVDH FY FR
Sbjct: 190 PADLLPPAEADDLEAAVGAEDEETVLAKVVRTKVFEMPPLTVEEALEQLENVDHDFYCFR 249
Query: 304 NEETGEINIVYKRKEGGYGLIIPKGNGQAE 215
+E TG++NI+Y+RKEGGYGLIIPK +G+ +
Sbjct: 250 DEATGQVNILYRRKEGGYGLIIPKNDGKVD 279
[15][TOP]
>UniRef100_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LMC5_PICSI
Length = 321
Score = 103 bits (258), Expect = 6e-21
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 10/123 (8%)
Frame = -2
Query: 526 HGRHMKGFNRAKVREPVEV------EVPLEEDDDISPLEEEGEATLV----EVVRTKYFD 377
HGR K + K+ E + E +E DD++ +EE + EVVRTKYF+
Sbjct: 191 HGRPSKMRKQPKLGELLSTVVMDVKETRDKELDDLADVEEMRYEKIDDLSDEVVRTKYFE 250
Query: 376 MPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLM 197
MPP++ EA+EQL+NVDH FYAFRN E+GE+N++YKRK GGYGLI+PK N + E P M
Sbjct: 251 MPPMSPEEALEQLMNVDHDFYAFRNMESGEVNVLYKRKHGGYGLIVPKNNERWE--NPTM 308
Query: 196 VEP 188
P
Sbjct: 309 EVP 311
[16][TOP]
>UniRef100_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
bicolor RepID=C5WRX8_SORBI
Length = 310
Score = 102 bits (255), Expect = 1e-20
Identities = 52/101 (51%), Positives = 70/101 (69%), Gaps = 7/101 (6%)
Frame = -2
Query: 475 EVEVPLEEDDDISPLE-------EEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAF 317
E E+PL +DD + E E+ + + +VVRTK F+MPPLTV EA+EQL NV H F
Sbjct: 188 EEELPLLDDDLVEADELAAAVGAEDEQTVVAKVVRTKVFEMPPLTVEEALEQLDNVGHNF 247
Query: 316 YAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMV 194
Y FR+E TG++NI+Y+RKEGGYGLIIPK +G + + + V
Sbjct: 248 YCFRDEATGQVNILYRRKEGGYGLIIPKEDGNFDNKDTVGV 288
[17][TOP]
>UniRef100_Q2JIS4 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIS4_SYNJB
Length = 190
Score = 92.0 bits (227), Expect = 2e-17
Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = -2
Query: 493 KVREPVEVEVPLEEDDDISPLEEEGEATL-VEVVRTKYFDMPPLTVSEAIEQLVNVDHAF 317
+VR + V + + PL E +A L EVVRTKYF MPP+TV EA+ QL VDH F
Sbjct: 103 RVRHTPKTSVAVAQQPVTDPLNTERQAELPAEVVRTKYFAMPPMTVQEALHQLELVDHDF 162
Query: 316 YAFRNEETGEINIVYKRKEGGYGLIIPK 233
Y FRN E GEIN++Y R GGYGLI P+
Sbjct: 163 YVFRNIENGEINVIYVRNHGGYGLIRPR 190
[18][TOP]
>UniRef100_A9TA00 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9TA00_PHYPA
Length = 297
Score = 92.0 bits (227), Expect = 2e-17
Identities = 50/95 (52%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = -2
Query: 508 GFNRAKVREPVEVEVPLEEDDDISP-LEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVN 332
G R P EV E D+ P LE + + EVVRTKYF+M P+ EA+EQLVN
Sbjct: 190 GHGRPAKYSPRIGEVLSNEVVDLDPILERKPDDLPDEVVRTKYFEMRPMKPLEALEQLVN 249
Query: 331 VDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGN 227
V H FYAFRN E+GEINI+YKR GGYG+I+P+ +
Sbjct: 250 VGHDFYAFRNVESGEINILYKRTHGGYGIIVPRND 284
[19][TOP]
>UniRef100_Q2JS19 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=Q2JS19_SYNJA
Length = 191
Score = 91.7 bits (226), Expect = 3e-17
Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = -2
Query: 493 KVREPVEVEVPLEEDDDISPLEEEGEATLV-EVVRTKYFDMPPLTVSEAIEQLVNVDHAF 317
++R + V + + PL E +A L EVVRTKYF MPP+TV EA+ QL VDH F
Sbjct: 103 RIRHSPKTSVAVAQQPLTDPLNTERQAELPPEVVRTKYFAMPPMTVQEALHQLELVDHDF 162
Query: 316 YAFRNEETGEINIVYKRKEGGYGLIIP 236
Y FRN E GEIN++Y RK GGYGLI P
Sbjct: 163 YVFRNIENGEINVIYVRKHGGYGLIRP 189
[20][TOP]
>UniRef100_A9RWK9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWK9_PHYPA
Length = 221
Score = 91.3 bits (225), Expect = 4e-17
Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Frame = -2
Query: 526 HGRHMKGFNRAKVREPVEVEVPLEEDDDISP-LEEEGEATLVEVVRTKYFDMPPLTVSEA 350
HGR K + ++ E + EV D+ P L + + E+VRTKYF+M P+ EA
Sbjct: 113 HGRPTKSRHSPRIGEVLSDEVV-----DLDPILGRKPDDLPDEIVRTKYFEMRPMKPLEA 167
Query: 349 IEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+EQLVNV H FYAFRN E+GEINI+YKR GGYG+I+P+
Sbjct: 168 LEQLVNVGHDFYAFRNVESGEINILYKRTHGGYGIIVPR 206
[21][TOP]
>UniRef100_B8HK26 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7425 RepID=B8HK26_CYAP4
Length = 209
Score = 90.9 bits (224), Expect = 5e-17
Identities = 54/103 (52%), Positives = 65/103 (63%), Gaps = 2/103 (1%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEED--DDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAI 347
R +R+K EPV V VPL D D +P E EVVRTKYF MPP+T+ EA+
Sbjct: 97 RRQDKHSRSK-EEPV-VSVPLVTDLTGDRTPELPE------EVVRTKYFAMPPMTLREAL 148
Query: 346 EQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQA 218
EQL VDH FY FRN ETGEIN++Y+R GGYG+I P+ A
Sbjct: 149 EQLELVDHDFYMFRNAETGEINVIYERNHGGYGVIQPRNGSSA 191
[22][TOP]
>UniRef100_B2IVM1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2IVM1_NOSP7
Length = 214
Score = 89.0 bits (219), Expect = 2e-16
Identities = 41/61 (67%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK-GN 227
EVVRTKYF MPP+T++EA+EQL V H FY FRN ETGEIN++Y+R GGYG+I P+ GN
Sbjct: 131 EVVRTKYFSMPPMTLAEALEQLQLVGHDFYMFRNSETGEINVIYERNHGGYGVIHPRNGN 190
Query: 226 G 224
G
Sbjct: 191 G 191
[23][TOP]
>UniRef100_B9I261 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I261_POPTR
Length = 118
Score = 88.2 bits (217), Expect = 3e-16
Identities = 46/79 (58%), Positives = 54/79 (68%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSE 353
SDHGRHMKGFN+ KVREP+ EV D + + + + L E V TKYFDMPPLTV E
Sbjct: 37 SDHGRHMKGFNKLKVREPMSQEVENVAD---TVSQRKDDDNLDEAVHTKYFDMPPLTVHE 93
Query: 352 AIEQLVNVDHAFYAFRNEE 296
AI +L NVDHAFY F + E
Sbjct: 94 AIVRLGNVDHAFYGFGHAE 112
[24][TOP]
>UniRef100_Q8YSA5 Light-repressed protein n=1 Tax=Nostoc sp. PCC 7120
RepID=Q8YSA5_ANASP
Length = 213
Score = 87.8 bits (216), Expect = 4e-16
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGN 227
EVVRTKYF MPP+TV+EA+EQL V H FY F N ETGEIN++Y+R GGYG+I P+ N
Sbjct: 132 EVVRTKYFSMPPMTVTEALEQLQLVGHDFYMFHNAETGEINVIYERNHGGYGVIQPRNN 190
[25][TOP]
>UniRef100_Q3M699 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Anabaena variabilis ATCC 29413 RepID=Q3M699_ANAVT
Length = 213
Score = 87.8 bits (216), Expect = 4e-16
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGN 227
EVVRTKYF MPP+TV+EA+EQL V H FY F N ETGEIN++Y+R GGYG+I P+ N
Sbjct: 132 EVVRTKYFSMPPMTVTEALEQLQLVGHDFYMFHNAETGEINVIYERNHGGYGVIQPRNN 190
[26][TOP]
>UniRef100_A0ZCI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Nodularia spumigena CCY9414 RepID=A0ZCI5_NODSP
Length = 213
Score = 85.9 bits (211), Expect = 2e-15
Identities = 39/59 (66%), Positives = 46/59 (77%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGN 227
EVVRTKYF MPP+TV+EA EQL V H FY F N ETGEIN++Y+R GGYG+I P+ N
Sbjct: 132 EVVRTKYFSMPPMTVAEATEQLQLVGHDFYMFHNAETGEINVIYERNHGGYGVIQPRHN 190
[27][TOP]
>UniRef100_Q8DKM6 LrtA protein n=1 Tax=Thermosynechococcus elongatus BP-1
RepID=Q8DKM6_THEEB
Length = 209
Score = 84.3 bits (207), Expect = 5e-15
Identities = 46/91 (50%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = -2
Query: 502 NRAK-VREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVD 326
+RAK VE EV + D +P E +VVR KYF MPP+T+ EA+E L VD
Sbjct: 102 SRAKDTNSVVEPEVVTDLVGDRTPQLPE------QVVRMKYFAMPPMTIQEALEHLEMVD 155
Query: 325 HAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
H FY FRN +TGEIN+VY+R GGYG+I P+
Sbjct: 156 HDFYVFRNRDTGEINVVYERNHGGYGVIQPR 186
[28][TOP]
>UniRef100_Q5N179 Light repressed protein A homolog n=1 Tax=Synechococcus elongatus
PCC 6301 RepID=Q5N179_SYNP6
Length = 207
Score = 84.3 bits (207), Expect = 5e-15
Identities = 37/64 (57%), Positives = 48/64 (75%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNG 224
++VRTKYF MP +TV +A+ QL VDH FY FRN TGEIN++Y+R GGYG+I P+ G
Sbjct: 134 DIVRTKYFAMPAMTVEDALAQLQLVDHDFYMFRNAATGEINVIYERNHGGYGVIQPRPEG 193
Query: 223 QAEK 212
+EK
Sbjct: 194 NSEK 197
[29][TOP]
>UniRef100_Q31KN7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Synechococcus elongatus PCC 7942 RepID=Q31KN7_SYNE7
Length = 207
Score = 84.3 bits (207), Expect = 5e-15
Identities = 37/64 (57%), Positives = 48/64 (75%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNG 224
++VRTKYF MP +TV +A+ QL VDH FY FRN TGEIN++Y+R GGYG+I P+ G
Sbjct: 134 DIVRTKYFAMPAMTVEDALAQLQLVDHDFYMFRNAATGEINVIYERNHGGYGVIQPRPEG 193
Query: 223 QAEK 212
+EK
Sbjct: 194 NSEK 197
[30][TOP]
>UniRef100_B9YPU1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax='Nostoc
azollae' 0708 RepID=B9YPU1_ANAAZ
Length = 214
Score = 84.3 bits (207), Expect = 5e-15
Identities = 38/61 (62%), Positives = 47/61 (77%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNG 224
EVVRTKYF MPP+T++EA EQL V H FY FRN ETGEIN++Y+R GGYG+I P+
Sbjct: 132 EVVRTKYFPMPPMTLAEAQEQLQLVGHDFYMFRNAETGEINVIYERNHGGYGVIQPRNGN 191
Query: 223 Q 221
+
Sbjct: 192 R 192
[31][TOP]
>UniRef100_Q7NMI0 Glr0786 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NMI0_GLOVI
Length = 187
Score = 84.0 bits (206), Expect = 6e-15
Identities = 37/66 (56%), Positives = 49/66 (74%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
+E+ A EVVRTKYF MPP++ EA++ L VDH F+ FRN E+GEIN++Y R GGY
Sbjct: 122 DEKATALPKEVVRTKYFAMPPMSPEEALDHLALVDHDFFVFRNAESGEINVLYARNHGGY 181
Query: 250 GLIIPK 233
GLI+P+
Sbjct: 182 GLIVPR 187
[32][TOP]
>UniRef100_Q10ZL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZL6_TRIEI
Length = 215
Score = 83.6 bits (205), Expect = 8e-15
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLV-EVVRTKYFDMPPLTVSEAIE 344
R K ++KV + V++ +E + L + +A L EVVRTKYF MP +TV EA+E
Sbjct: 92 RKYKEKRQSKVNKTKTVDL-IESQPVVENLIGDRQAELPSEVVRTKYFPMPSMTVEEALE 150
Query: 343 QLVNVDHAFYAFRNEETGEINIVYKR-KEGGYGLIIPKGNG 224
QL +DH FY F N TGEIN++YKR GGYGLI P+ NG
Sbjct: 151 QLQLIDHDFYMFSNGVTGEINVIYKRYHHGGYGLIQPRPNG 191
[33][TOP]
>UniRef100_C7QW97 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Cyanothece RepID=C7QW97_CYAP0
Length = 205
Score = 83.6 bits (205), Expect = 8e-15
Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEV-EVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIE 344
++ + N K PV+V EV + + + EV+R KYF MPP+T+ EA+
Sbjct: 100 KYKEKLNNKKAPNPVKVGEVTTATAIEGDLIGDRTPELPAEVIRMKYFAMPPMTIDEALH 159
Query: 343 QLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGN 227
QL VDH FY FRN++T EIN++Y+R GGYG+I P G+
Sbjct: 160 QLELVDHDFYMFRNKDTDEINVIYQRNHGGYGVIQPHGS 198
[34][TOP]
>UniRef100_B4VJW0 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4VJW0_9CYAN
Length = 215
Score = 83.2 bits (204), Expect = 1e-14
Identities = 39/61 (63%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK-GN 227
EVVR KYF MPP+T+ EA EQL VDH FY FRN +T EIN++Y+R GGYG+I P+ GN
Sbjct: 132 EVVRMKYFAMPPMTIEEATEQLQLVDHDFYMFRNAKTDEINVIYERNHGGYGVIQPRNGN 191
Query: 226 G 224
G
Sbjct: 192 G 192
[35][TOP]
>UniRef100_B9ND14 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9ND14_POPTR
Length = 102
Score = 82.4 bits (202), Expect = 2e-14
Identities = 48/92 (52%), Positives = 56/92 (60%), Gaps = 13/92 (14%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDD-----DISPLEEEGEATLVEV--------VR 392
SDHGRHMKGFN+ KVREP+ V + D D L+E LV + V
Sbjct: 8 SDHGRHMKGFNKFKVREPMSQVVENDADTVSQRKDDDNLDELFYMHLVTIHSIISSNAVH 67
Query: 391 TKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEE 296
TKYFDMPP+TV EAI +L NVDHAFY FR+ E
Sbjct: 68 TKYFDMPPVTVDEAIVRLGNVDHAFYGFRHAE 99
[36][TOP]
>UniRef100_A0YIH4 Light-repressed protein n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YIH4_9CYAN
Length = 212
Score = 81.3 bits (199), Expect = 4e-14
Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLV-EVVRTKYFDMPPLTVSEAIE 344
R K + K P ++ +E I L + + L EVVRTKYF MPP+ + +A+E
Sbjct: 92 RKFKDKRQGKHLHPPKLAEVVENQPVIEDLIGDRQPELPPEVVRTKYFAMPPMNLQDALE 151
Query: 343 QLVNVDHAFYAFRNEETGEINIVYKR-KEGGYGLIIPKGN 227
QL VDH FY F N +TGE+N++YKR GGYGLI P+ N
Sbjct: 152 QLQLVDHDFYVFCNADTGELNVIYKRVNHGGYGLIQPRNN 191
[37][TOP]
>UniRef100_B9I248 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I248_POPTR
Length = 115
Score = 81.3 bits (199), Expect = 4e-14
Identities = 48/92 (52%), Positives = 55/92 (59%), Gaps = 13/92 (14%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDD-----DISPLEEEGEATLVEV--------VR 392
SDHGRHMKGFN+ KVREP+ V + D D L+E LV + V
Sbjct: 18 SDHGRHMKGFNKLKVREPMSQVVENDADTVSQRKDDDNLDELFYMHLVTIHSIISSNAVH 77
Query: 391 TKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEE 296
TKYFDMPPLTV EAI +L NVDHAFY F + E
Sbjct: 78 TKYFDMPPLTVDEAIVRLGNVDHAFYGFGHAE 109
[38][TOP]
>UniRef100_B5VV76 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Arthrospira maxima CS-328 RepID=B5VV76_SPIMA
Length = 212
Score = 80.9 bits (198), Expect = 5e-14
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 9/81 (11%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRK-EGGYGLI----- 242
EVVRTKYF MPP+++ EA+EQL +DH FY FRN ET EIN++Y+R GGYG+I
Sbjct: 132 EVVRTKYFAMPPMSIQEALEQLQLIDHDFYMFRNAETDEINVIYQRSHHGGYGVIQPRNG 191
Query: 241 -IPKGNGQ--AEKLEPLMVEP 188
+P NGQ AE E P
Sbjct: 192 SVPTSNGQTGAELTERASTSP 212
[39][TOP]
>UniRef100_B4WNT9 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WNT9_9SYNE
Length = 224
Score = 79.7 bits (195), Expect = 1e-13
Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDD------DISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+ A VR P +V+ + D DIS + VVR+KYF MPP+TV A+E
Sbjct: 102 DHATVR-PTDVDATINAPDITSHNADISEVLNHQPKLPDTVVRSKYFAMPPMTVQTALEN 160
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAE 215
L V H FY FRN ETGEIN++Y+R GYGL+ P+ N Q +
Sbjct: 161 LELVGHDFYMFRNVETGEINVIYERNHKGYGLLQPRQNHQTK 202
[40][TOP]
>UniRef100_B1WZE1 Light repressed protein n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WZE1_CYAA5
Length = 201
Score = 78.6 bits (192), Expect = 3e-13
Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLV-EVVRTKYFDMPPLTVSEAIE 344
++ + N K + V+ L E + L + EA L EV+R KYF MPP+++ EA
Sbjct: 95 KYKEKINNHKPQSSVKNPEVLPEREIEKDLIGDREAALPPEVIRMKYFAMPPMSIEEAKH 154
Query: 343 QLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEK 212
QL VDH FY FRN++T EIN++Y R GG+G+I P+ + +K
Sbjct: 155 QLELVDHDFYMFRNQDTDEINVIYMRNHGGFGVIQPREPNENDK 198
[41][TOP]
>UniRef100_B0JSS1 Light repressed protein A homolog n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JSS1_MICAN
Length = 199
Score = 78.2 bits (191), Expect = 4e-13
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = -2
Query: 493 KVREPVEV-EVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAF 317
+ PV+ EV E+ D S + + EVVR KYF MPP+T+ EA+ QL VDH F
Sbjct: 102 RTNAPVKTSEVVQEKPLDGSLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDF 161
Query: 316 YAFRNEETGEINIVYKRKEGGYGLIIPK 233
Y F N++T EIN++Y+R GG+G+I P+
Sbjct: 162 YMFCNKDTNEINVIYQRNHGGFGVIQPR 189
[42][TOP]
>UniRef100_B0CDL4 High light inducible protein n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDL4_ACAM1
Length = 212
Score = 78.2 bits (191), Expect = 4e-13
Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Frame = -2
Query: 511 KGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVE-VVRTKYFDMPPLTVSEAIEQLV 335
KG NR+K V ++ P EE I L + L E VVR KYF + P++V +A+EQL
Sbjct: 105 KGSNRSKA---VALQTP-EEQPLIGDLTRDRAPELPEEVVRCKYFAISPMSVHDALEQLD 160
Query: 334 NVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
VDH FY F N +TG++N++Y+R GGYG+I P+
Sbjct: 161 LVDHDFYVFENADTGQLNVIYERNHGGYGVIQPR 194
[43][TOP]
>UniRef100_B7KLI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7424 RepID=B7KLI5_CYAP7
Length = 199
Score = 77.4 bits (189), Expect = 6e-13
Identities = 33/57 (57%), Positives = 44/57 (77%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
EVVR KYF MPP+++ EA+EQL VDH F+ FRN +T EIN++Y R GG+G+I P+
Sbjct: 133 EVVRMKYFGMPPMSIDEALEQLQLVDHDFFMFRNRDTNEINVIYIRNHGGFGVIQPR 189
[44][TOP]
>UniRef100_P47908 Light repressed protein A n=1 Tax=Synechococcus sp. PCC 7002
RepID=LRTA_SYNP2
Length = 193
Score = 77.0 bits (188), Expect = 8e-13
Identities = 34/57 (59%), Positives = 43/57 (75%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
EVVR KYF MPP+T+ EA+EQL VDH FY F N++T IN++Y R GGYG+I P+
Sbjct: 133 EVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTNAINVIYIRNHGGYGVIQPR 189
[45][TOP]
>UniRef100_P74518 Light repressed protein A homolog n=1 Tax=Synechocystis sp. PCC
6803 RepID=LRTA_SYNY3
Length = 191
Score = 76.6 bits (187), Expect = 1e-12
Identities = 33/56 (58%), Positives = 43/56 (76%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
EV+R KYF MPP+ + +A+EQL VDH FY FRN++T EIN++Y R GGYG+I P
Sbjct: 132 EVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRNKDTDEINVIYIRNHGGYGVIQP 187
[46][TOP]
>UniRef100_A8YEZ8 LrtA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YEZ8_MICAE
Length = 199
Score = 75.9 bits (185), Expect = 2e-12
Identities = 43/99 (43%), Positives = 61/99 (61%)
Frame = -2
Query: 529 DHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEA 350
DH H + K E V+ E PL DD++ + + EVVR KYF MPP+T+ EA
Sbjct: 100 DHRTH----STVKTSEVVQ-EKPL--DDNL--IGDRTPELPAEVVRMKYFAMPPMTIEEA 150
Query: 349 IEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ QL VDH F+ F N++T EIN++Y+R GG+G+I P+
Sbjct: 151 LTQLQLVDHDFFMFCNKDTNEINVIYQRNHGGFGVIQPR 189
[47][TOP]
>UniRef100_A3IRI7 Light repressed protein n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IRI7_9CHRO
Length = 199
Score = 75.9 bits (185), Expect = 2e-12
Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLV-EVVRTKYFDMPPLTVSEAIE 344
++ + N K + V+ L E + L + E L EV+R KYF MPP+++ EA
Sbjct: 93 KYKEKINNHKPQSSVKSPDVLPETEVKEDLIGDREVELPPEVIRMKYFAMPPMSIEEAKH 152
Query: 343 QLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
QL VDH FY FRN++T EIN++Y R GG+G+I P+
Sbjct: 153 QLELVDHDFYMFRNQDTDEINVIYMRNHGGFGVIQPR 189
[48][TOP]
>UniRef100_B4AWR2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7822 RepID=B4AWR2_9CHRO
Length = 199
Score = 75.5 bits (184), Expect = 2e-12
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
EVVR KYF MP +++ EA+EQL VDH FY FRN T EIN++Y R GGYG+I P+
Sbjct: 133 EVVRMKYFAMPLMSIEEALEQLQLVDHDFYMFRNRNTNEINVIYIRNHGGYGVIQPR 189
[49][TOP]
>UniRef100_A5GUZ2 Light repressed protein A homolog n=1 Tax=Synechococcus sp. RCC307
RepID=A5GUZ2_SYNR3
Length = 187
Score = 73.9 bits (180), Expect = 7e-12
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = -2
Query: 400 VVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
VVR KYF MPP++V EAI QL +DH FY FRN + GE+ +VY+R GGYG+I
Sbjct: 131 VVRRKYFAMPPMSVEEAIHQLEVIDHDFYVFRNADNGELQVVYQRNHGGYGVI 183
[50][TOP]
>UniRef100_Q4CAE1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Crocosphaera watsonii WH 8501 RepID=Q4CAE1_CROWT
Length = 199
Score = 73.6 bits (179), Expect = 9e-12
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
EV+R KYF MP +++ EA QL VDH FY FRN+ET EIN++Y R GG+G+I P+
Sbjct: 133 EVIRMKYFAMPSMSIEEAKHQLELVDHDFYMFRNQETEEINVIYMRNHGGFGIIQPR 189
[51][TOP]
>UniRef100_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD
Length = 189
Score = 72.0 bits (175), Expect = 3e-11
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = -2
Query: 457 EEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINI 278
EE++DI P +VRTK F M P++ EA+ Q+ +DH F+ F N +TG+IN+
Sbjct: 124 EEEEDIEP----------RIVRTKQFQMKPMSAEEAVLQMELLDHDFFVFTNADTGDINV 173
Query: 277 VYKRKEGGYGLIIP 236
VY+R++G YGLI P
Sbjct: 174 VYRRRDGNYGLIEP 187
[52][TOP]
>UniRef100_Q7V2R9 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
subsp. pastoris str. CCMP1986 RepID=Q7V2R9_PROMP
Length = 194
Score = 71.6 bits (174), Expect = 3e-11
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISP--LEEEGEATLVEV-VRTKYFDMPPLTVSEA 350
RH K + V+ +EE D I EE E L E ++ KYF+M P+++ EA
Sbjct: 96 RHNKKLHNNLVKNKNSYSNAIEESDSIDKDIFNEEREVRLPEPSIKKKYFEMIPISLEEA 155
Query: 349 IEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+QL +DH FY FRN+ E+ ++YKR GGYGLI K
Sbjct: 156 RKQLDFIDHDFYLFRNKLNNELQVIYKRNHGGYGLIQSK 194
[53][TOP]
>UniRef100_A4CWK2 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CWK2_SYNPV
Length = 195
Score = 71.2 bits (173), Expect = 4e-11
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEV-VRTKYFDMPPLTVS 356
SDH H G K E E L+ + + L + E L VR KYF MPP+T+
Sbjct: 98 SDH-HHSHGH---KASETPTTEAVLDNEAVVESLLDGKEVQLPSPGVRRKYFAMPPMTLE 153
Query: 355 EAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKG 230
+A +QL +DH FY FR+ ++GE+ ++Y R GGYG+I +G
Sbjct: 154 QARQQLDLIDHDFYVFRDSDSGELQVIYHRNHGGYGVIEARG 195
[54][TOP]
>UniRef100_Q8RCC0 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8RCC0_THETN
Length = 184
Score = 70.9 bits (172), Expect = 6e-11
Identities = 39/89 (43%), Positives = 52/89 (58%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDH 323
NR E + +VP D+ EEE T E+V+TK F + P++ EAI Q+ + H
Sbjct: 95 NRFGANESIRFDVPTIYDEGEKREEEE---TSFEIVKTKRFPIKPMSPEEAILQMNLLGH 151
Query: 322 AFYAFRNEETGEINIVYKRKEGGYGLIIP 236
F+ F N ET IN+VYKRK+G YGLI P
Sbjct: 152 TFFVFTNAETDMINVVYKRKDGKYGLIEP 180
[55][TOP]
>UniRef100_C0Z6T8 Putative uncharacterized protein yvyD n=1 Tax=Brevibacillus brevis
NBRC 100599 RepID=C0Z6T8_BREBN
Length = 185
Score = 70.9 bits (172), Expect = 6e-11
Identities = 31/84 (36%), Positives = 54/84 (64%)
Frame = -2
Query: 484 EPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFR 305
+PV V +P +++DI +++VRTK FD+ P+ EA+ Q+ + H+F+ F+
Sbjct: 112 QPVAVMIPDVDEEDID----------IDIVRTKRFDLKPMDAQEAVMQMDMLGHSFFVFQ 161
Query: 304 NEETGEINIVYKRKEGGYGLIIPK 233
N +T ++++VY+R +G YGLI PK
Sbjct: 162 NSDTNDVSVVYRRNDGRYGLIEPK 185
[56][TOP]
>UniRef100_C4L5L1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sp. AT1b RepID=C4L5L1_EXISA
Length = 187
Score = 70.5 bits (171), Expect = 7e-11
Identities = 36/76 (47%), Positives = 50/76 (65%)
Frame = -2
Query: 460 LEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEIN 281
LE DD + +E EA L E+VRTK F + P+ EAI Q+ + H+F+ F + ETG N
Sbjct: 113 LEGPDDTPAVYDEDEAEL-ELVRTKRFTLKPMDTEEAILQMDMLGHSFFVFSDAETGNTN 171
Query: 280 IVYKRKEGGYGLIIPK 233
+VY+RK+G YGLI P+
Sbjct: 172 VVYRRKDGKYGLIEPE 187
[57][TOP]
>UniRef100_C6PFL3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Thermoanaerobacter italicus Ab9 RepID=C6PFL3_9THEO
Length = 181
Score = 70.5 bits (171), Expect = 7e-11
Identities = 37/89 (41%), Positives = 52/89 (58%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDH 323
NR E + E+P + +EE E T E+V+TK F + P++ EAI Q+ + H
Sbjct: 95 NRFGANESIRFEIPSVYQE----AKEEEEETSFEIVKTKRFPIKPMSAEEAILQMNLLGH 150
Query: 322 AFYAFRNEETGEINIVYKRKEGGYGLIIP 236
F+ F N +T IN+VYKRK+G YGLI P
Sbjct: 151 NFFVFTNADTDTINVVYKRKDGKYGLIEP 179
[58][TOP]
>UniRef100_B5IMZ9 Light repressed protein n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5IMZ9_9CHRO
Length = 195
Score = 70.5 bits (171), Expect = 7e-11
Identities = 30/55 (54%), Positives = 40/55 (72%)
Frame = -2
Query: 397 VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
VR KYF MPP+++ EA+ QL +DH FY FR E+G+I +VY R GG+G+I PK
Sbjct: 139 VRRKYFAMPPMSLDEALHQLELIDHDFYVFREAESGQIQVVYHRNHGGFGVIQPK 193
[59][TOP]
>UniRef100_Q8XIE9 30S ribosomal protein S30AE family n=1 Tax=Clostridium perfringens
RepID=Q8XIE9_CLOPE
Length = 179
Score = 70.1 bits (170), Expect = 1e-10
Identities = 30/69 (43%), Positives = 47/69 (68%)
Frame = -2
Query: 442 ISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRK 263
I P+E+ E ++V+TK FD+ P+ EA+ Q+ + H F+ F++ ET ++N+VYKRK
Sbjct: 106 IDPIEDMKEEKEAKIVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPETNQLNVVYKRK 165
Query: 262 EGGYGLIIP 236
+G YGLI P
Sbjct: 166 DGNYGLIEP 174
[60][TOP]
>UniRef100_Q0SR10 Ribosomal subunit interface protein n=1 Tax=Clostridium perfringens
SM101 RepID=Q0SR10_CLOPS
Length = 179
Score = 70.1 bits (170), Expect = 1e-10
Identities = 30/69 (43%), Positives = 47/69 (68%)
Frame = -2
Query: 442 ISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRK 263
I P+E+ E ++V+TK FD+ P+ EA+ Q+ + H F+ F++ ET ++N+VYKRK
Sbjct: 106 IDPIEDMKEEKEAKIVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPETNQLNVVYKRK 165
Query: 262 EGGYGLIIP 236
+G YGLI P
Sbjct: 166 DGNYGLIEP 174
[61][TOP]
>UniRef100_C6Q3Y9 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Thermoanaerobacter mathranii subsp. mathranii str.
A3 RepID=C6Q3Y9_9THEO
Length = 181
Score = 70.1 bits (170), Expect = 1e-10
Identities = 37/89 (41%), Positives = 52/89 (58%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDH 323
NR E + E+P + +EE E T E+V+TK F + P++ EAI Q+ + H
Sbjct: 95 NRFGANESIRFEIPPVYQE----AKEEEEETSFEIVKTKRFPIKPMSAEEAILQMNLLGH 150
Query: 322 AFYAFRNEETGEINIVYKRKEGGYGLIIP 236
F+ F N +T IN+VYKRK+G YGLI P
Sbjct: 151 NFFVFTNADTDTINVVYKRKDGKYGLIEP 179
[62][TOP]
>UniRef100_Q0TND9 Ribosomal subunit interface protein n=6 Tax=Clostridium perfringens
RepID=Q0TND9_CLOP1
Length = 179
Score = 70.1 bits (170), Expect = 1e-10
Identities = 30/69 (43%), Positives = 47/69 (68%)
Frame = -2
Query: 442 ISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRK 263
I P+E+ E ++V+TK FD+ P+ EA+ Q+ + H F+ F++ ET ++N+VYKRK
Sbjct: 106 IDPIEDMKEEKEAKIVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPETNQLNVVYKRK 165
Query: 262 EGGYGLIIP 236
+G YGLI P
Sbjct: 166 DGNYGLIEP 174
[63][TOP]
>UniRef100_B1YLH2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sibiricum 255-15 RepID=B1YLH2_EXIS2
Length = 187
Score = 69.7 bits (169), Expect = 1e-10
Identities = 36/76 (47%), Positives = 50/76 (65%)
Frame = -2
Query: 460 LEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEIN 281
LE + +P+ EE EA L E+VRTK F + P+ EAI Q+ + H F+ F + ETG N
Sbjct: 113 LEGPEAEAPVYEEDEAEL-ELVRTKRFTLKPMDTEEAILQMDMLGHTFFVFSDAETGNTN 171
Query: 280 IVYKRKEGGYGLIIPK 233
+VY+RK+G YGLI P+
Sbjct: 172 VVYRRKDGRYGLIEPE 187
[64][TOP]
>UniRef100_Q7XYJ6 Ribosomal protein rpS22 (Fragment) n=1 Tax=Bigelowiella natans
RepID=Q7XYJ6_BIGNA
Length = 170
Score = 69.7 bits (169), Expect = 1e-10
Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Frame = -2
Query: 460 LEEDDDISPLE----EEGEATL--VEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNE 299
++ DD+ E EG A + V VVR K F MPP+++ +A L +DH FY FRN
Sbjct: 87 VQGQDDVQQEEYSGIPEGYAPVEDVSVVRRKKFPMPPISIEDATLCLDYLDHDFYVFRNS 146
Query: 298 ETGEINIVYKRKEGGYGLIIPK 233
ET EIN+VY+R EGG GLI P+
Sbjct: 147 ETKEINVVYRRAEGGVGLIEPE 168
[65][TOP]
>UniRef100_C6J2M0 Ribosomal subunit interface protein n=1 Tax=Paenibacillus sp. oral
taxon 786 str. D14 RepID=C6J2M0_9BACL
Length = 183
Score = 69.3 bits (168), Expect = 2e-10
Identities = 40/93 (43%), Positives = 56/93 (60%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR ++ V+ + +E+ S +EGE L EVVRTK F + P+ V EAI Q
Sbjct: 89 KHKTKINRKLRQKGVKNSLFVEDATTGSVALDEGEEEL-EVVRTKRFTLKPMDVEEAILQ 147
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
+ V H F+ F N +T E+N+VYKR +G YGLI
Sbjct: 148 MNMVGHNFFVFSNIDTKEVNVVYKRNDGKYGLI 180
[66][TOP]
>UniRef100_A3DJE4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3
Tax=Clostridium thermocellum RepID=A3DJE4_CLOTH
Length = 177
Score = 69.3 bits (168), Expect = 2e-10
Identities = 38/73 (52%), Positives = 49/73 (67%)
Frame = -2
Query: 451 DDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVY 272
DDD +EEE + EVVRTK F + P+TV EAI Q+ + H F+ F N ET E N+VY
Sbjct: 109 DDD--EVEEEPK---FEVVRTKKFAIKPMTVEEAILQMNLLGHQFFMFSNAETNEANVVY 163
Query: 271 KRKEGGYGLIIPK 233
+RK+G YGLI P+
Sbjct: 164 RRKDGNYGLIEPE 176
[67][TOP]
>UniRef100_Q3AZ51 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Synechococcus sp. CC9902 RepID=Q3AZ51_SYNS9
Length = 195
Score = 68.9 bits (167), Expect = 2e-10
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Frame = -2
Query: 457 EEDDDISPLE----EEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEET 293
EE D S +E + EA L E VR KYF MPP+T+ +A QL +DH FY FR+ +T
Sbjct: 115 EEVSDESAVEGSLVDGKEAQLPEPGVRRKYFSMPPMTLDDARHQLDVIDHDFYLFRDSKT 174
Query: 292 GEINIVYKRKEGGYGLI 242
G++ ++Y+R GGYG+I
Sbjct: 175 GDLQVIYRRNHGGYGVI 191
[68][TOP]
>UniRef100_A2BV60 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9515 RepID=A2BV60_PROM5
Length = 194
Score = 68.9 bits (167), Expect = 2e-10
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = -2
Query: 445 DISPLEEEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYK 269
D + ++ EA L E ++ KYF+M P+++ EA +QL +DH FY FRN++ E+ ++YK
Sbjct: 123 DKNIFNDKREAKLPEPSIKNKYFEMIPISLEEARKQLDLIDHDFYVFRNKKNNELQVIYK 182
Query: 268 RKEGGYGLIIPK 233
RK GGYGLI K
Sbjct: 183 RKHGGYGLIQSK 194
[69][TOP]
>UniRef100_C4G2X0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4G2X0_ABIDE
Length = 175
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/66 (48%), Positives = 46/66 (69%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
+++ E V+V+RTK F + P+ EA Q+ ++H+FY FRN ET E+N+VYKRK G Y
Sbjct: 109 DDDYEDEDVKVIRTKRFAVKPMDPEEACVQMELLNHSFYVFRNAETDEVNVVYKRKNGDY 168
Query: 250 GLIIPK 233
GLI P+
Sbjct: 169 GLIEPE 174
[70][TOP]
>UniRef100_C2U573 Ribosome-associated factor Y n=3 Tax=Bacillus cereus
RepID=C2U573_BACCE
Length = 180
Score = 68.9 bits (167), Expect = 2e-10
Identities = 41/96 (42%), Positives = 57/96 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE V+ + ++ L+E E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSVKTNFILPEAVAVLDEVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[71][TOP]
>UniRef100_C2QJQ3 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Bacillus cereus R309803 RepID=C2QJQ3_BACCE
Length = 180
Score = 68.9 bits (167), Expect = 2e-10
Identities = 41/96 (42%), Positives = 57/96 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE V+ + ++ L+E E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSVKTNFILPEAVAVLDEVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[72][TOP]
>UniRef100_B7HEI9 Ribosomal subunit interface protein n=9 Tax=Bacillus cereus group
RepID=B7HEI9_BACC4
Length = 180
Score = 68.6 bits (166), Expect = 3e-10
Identities = 40/96 (41%), Positives = 57/96 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE ++ + ++ L+E E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSIKTNFILPEAVAVLDEVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[73][TOP]
>UniRef100_UPI00006DCB57 hypothetical protein CdifQ_04002839 n=1 Tax=Clostridium difficile
QCD-32g58 RepID=UPI00006DCB57
Length = 138
Score = 68.2 bits (165), Expect = 4e-10
Identities = 37/71 (52%), Positives = 47/71 (66%)
Frame = -2
Query: 454 EDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIV 275
E DD +EE E ++E R K F++ P++ EAI Q+ V H FY FRN++ EINIV
Sbjct: 67 EFDDYDYDDEEDENIVIE--RRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDNFEINIV 124
Query: 274 YKRKEGGYGLI 242
YKRK GGYGLI
Sbjct: 125 YKRKAGGYGLI 135
[74][TOP]
>UniRef100_C9XLM7 Putative sigma 54 modulation protein n=3 Tax=Clostridium difficile
RepID=C9XLM7_CLODI
Length = 187
Score = 68.2 bits (165), Expect = 4e-10
Identities = 37/71 (52%), Positives = 47/71 (66%)
Frame = -2
Query: 454 EDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIV 275
E DD +EE E ++E R K F++ P++ EAI Q+ V H FY FRN++ EINIV
Sbjct: 116 EFDDYDYDDEEDENIVIE--RRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDNFEINIV 173
Query: 274 YKRKEGGYGLI 242
YKRK GGYGLI
Sbjct: 174 YKRKAGGYGLI 184
[75][TOP]
>UniRef100_A7VXE1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753
RepID=A7VXE1_9CLOT
Length = 183
Score = 68.2 bits (165), Expect = 4e-10
Identities = 34/86 (39%), Positives = 54/86 (62%)
Frame = -2
Query: 493 KVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFY 314
K+R ++ L ++ + + EEE E ++ R K+F + PL V EAI Q+ + H F+
Sbjct: 96 KIRAVGAIDEFLAQETEEASAEEEAEGDY-KIERIKHFALKPLLVEEAILQMNMIGHQFF 154
Query: 313 AFRNEETGEINIVYKRKEGGYGLIIP 236
F+N ETG++N+VY RK+G YGL+ P
Sbjct: 155 MFQNMETGDVNVVYVRKDGTYGLLEP 180
[76][TOP]
>UniRef100_A7GUW3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GUW3_BACCN
Length = 179
Score = 67.8 bits (164), Expect = 5e-10
Identities = 40/96 (41%), Positives = 55/96 (57%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE + D + +EE + +E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSAKTAFILPDQLG--QEEVQEDELELVRTKRFDLKPMDVEEAILQ 143
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E NIVY RK+G YGLI K
Sbjct: 144 MDMLGHNFFVFTNADTNETNIVYGRKDGKYGLIEAK 179
[77][TOP]
>UniRef100_A5GJ89 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJ89_SYNPW
Length = 195
Score = 67.8 bits (164), Expect = 5e-10
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEV-VRTKYFDMPPLTVS 356
SDH H G + E E L+++ + L + E L VR KYF MPP+T+
Sbjct: 98 SDH-HHSHGH---RASETPTTESVLDDEAIVESLLDGKEVQLPSPGVRRKYFSMPPMTLE 153
Query: 355 EAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
+A +QL +DH FY FR+ +G++ ++Y+R GGYG+I
Sbjct: 154 QARQQLDLIDHDFYLFRDSASGDLQVIYRRNHGGYGVI 191
[78][TOP]
>UniRef100_A2BPM8 Light repressed protein A n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPM8_PROMS
Length = 194
Score = 67.8 bits (164), Expect = 5e-10
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -2
Query: 445 DISPLEEEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYK 269
D + +E EA+L E ++ KYF+M P++ EA +QL +DH FY FRN++ E+ ++YK
Sbjct: 123 DKALFKEGTEASLPEPSIKNKYFEMTPISSDEARKQLDLIDHDFYVFRNKKNNELQVIYK 182
Query: 268 RKEGGYGLIIPK 233
R GGYGLI K
Sbjct: 183 RNHGGYGLIQSK 194
[79][TOP]
>UniRef100_C2WEE0 Ribosome-associated factor Y n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WEE0_BACCE
Length = 180
Score = 67.8 bits (164), Expect = 5e-10
Identities = 41/96 (42%), Positives = 55/96 (57%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE + + + LEE E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSPKTTFILTESAATLEEVKEDDL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[80][TOP]
>UniRef100_C2SSP0 Ribosome-associated factor Y n=1 Tax=Bacillus cereus BDRD-ST196
RepID=C2SSP0_BACCE
Length = 180
Score = 67.8 bits (164), Expect = 5e-10
Identities = 40/96 (41%), Positives = 57/96 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE V+ + ++ L+ E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSVKTNFILPEAVAVLDAVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H+F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHSFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[81][TOP]
>UniRef100_B7HX18 Ribosomal subunit interface protein n=6 Tax=Bacillus cereus group
RepID=B7HX18_BACC7
Length = 180
Score = 67.8 bits (164), Expect = 5e-10
Identities = 40/96 (41%), Positives = 57/96 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE ++ + ++ L+E E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSMKTNFILPEAVAVLDEVEEDQL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[82][TOP]
>UniRef100_B7A6F1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thermus
aquaticus Y51MC23 RepID=B7A6F1_THEAQ
Length = 186
Score = 67.8 bits (164), Expect = 5e-10
Identities = 33/67 (49%), Positives = 44/67 (65%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P EEEG +VR K F+M P+ EA+ Q+ + H F+ FRN +T EIN+VY+RK+G
Sbjct: 123 PEEEEGP----RIVRVKRFEMKPMDPEEAVFQMEALGHDFFVFRNAKTDEINVVYRRKDG 178
Query: 256 GYGLIIP 236
YGLI P
Sbjct: 179 NYGLIEP 185
[83][TOP]
>UniRef100_Q72XS8 Ribosomal subunit interface protein n=5 Tax=Bacillus cereus group
RepID=Q72XS8_BACC1
Length = 180
Score = 67.8 bits (164), Expect = 5e-10
Identities = 40/96 (41%), Positives = 57/96 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE ++ + ++ L+E E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSMKTNFILPEAVAVLDEVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[84][TOP]
>UniRef100_B5UPY3 Ribosomal subunit interface protein n=6 Tax=Bacillus cereus group
RepID=B5UPY3_BACCE
Length = 180
Score = 67.8 bits (164), Expect = 5e-10
Identities = 40/96 (41%), Positives = 57/96 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE ++ + ++ L+E E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSMKTNFILPEAVAVLDEVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[85][TOP]
>UniRef100_A1HT12 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Thermosinus carboxydivorans Nor1 RepID=A1HT12_9FIRM
Length = 174
Score = 67.8 bits (164), Expect = 5e-10
Identities = 30/63 (47%), Positives = 44/63 (69%)
Frame = -2
Query: 421 GEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
GE+ VV+TK F + P+ V EAI Q+ ++H FY F N ET ++N++Y+RK+G YGLI
Sbjct: 111 GESEDFRVVKTKRFPVKPMDVEEAIMQMNLINHDFYVFMNAETEQVNVIYRRKDGNYGLI 170
Query: 241 IPK 233
P+
Sbjct: 171 EPE 173
[86][TOP]
>UniRef100_Q8ENI5 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis
RepID=Q8ENI5_OCEIH
Length = 185
Score = 67.4 bits (163), Expect = 6e-10
Identities = 29/65 (44%), Positives = 46/65 (70%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
E+E + +E+VRTK F++ P+ EAI Q+ + H F+ F N+++GE N+VY+R++G Y
Sbjct: 119 EDEEDENQLEIVRTKRFNLKPMDSEEAILQMDMLGHEFFVFTNDDSGETNVVYRRRDGKY 178
Query: 250 GLIIP 236
GLI P
Sbjct: 179 GLIEP 183
[87][TOP]
>UniRef100_Q31CD8 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Prochlorococcus marinus str. MIT 9312
RepID=Q31CD8_PROM9
Length = 194
Score = 67.4 bits (163), Expect = 6e-10
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Frame = -2
Query: 463 PLEEDD----DISPLEEEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNE 299
P+E D D + ++ EA+L E ++ KYF+M P++ EA +QL +DH FY FRN+
Sbjct: 113 PIESADSNVLDKTLFKQGREASLPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYVFRNK 172
Query: 298 ETGEINIVYKRKEGGYGLIIPK 233
+ E+ ++YKR GGYGLI K
Sbjct: 173 KNNELQVIYKRNHGGYGLIQSK 194
[88][TOP]
>UniRef100_A3PBB8 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9301 RepID=A3PBB8_PROM0
Length = 194
Score = 67.4 bits (163), Expect = 6e-10
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = -2
Query: 430 EEEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGG 254
+E EA+L E ++ KYF+M P++ EA +QL +DH FY FRN++ E+ ++YKR GG
Sbjct: 128 KEGTEASLPEPSIKNKYFEMTPISSDEARKQLDLIDHDFYVFRNKKNNELQVIYKRNHGG 187
Query: 253 YGLIIPK 233
YGLI K
Sbjct: 188 YGLIQSK 194
[89][TOP]
>UniRef100_C7IPR2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Thermoanaerobacter ethanolicus CCSD1
RepID=C7IPR2_THEET
Length = 181
Score = 67.4 bits (163), Expect = 6e-10
Identities = 37/89 (41%), Positives = 53/89 (59%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDH 323
NR E + E+P ++ EEEG E+V+TK F + P++ EAI Q+ + H
Sbjct: 95 NRFGANESIRFEIP-PVYEEAKGEEEEGS---FEIVKTKRFPIKPMSPEEAILQMNLLGH 150
Query: 322 AFYAFRNEETGEINIVYKRKEGGYGLIIP 236
+F+ F N +T IN+VYKRK+G YGLI P
Sbjct: 151 SFFVFTNADTDTINVVYKRKDGKYGLIEP 179
[90][TOP]
>UniRef100_C3AT15 Ribosome-associated factor Y n=3 Tax=Bacillus RepID=C3AT15_BACMY
Length = 180
Score = 67.4 bits (163), Expect = 6e-10
Identities = 41/96 (42%), Positives = 55/96 (57%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE + + + LEE E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSPKTAFILTEPAATLEEVKEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[91][TOP]
>UniRef100_C2Q3D0 Ribosome-associated factor Y n=2 Tax=Bacillus cereus
RepID=C2Q3D0_BACCE
Length = 180
Score = 67.4 bits (163), Expect = 6e-10
Identities = 39/96 (40%), Positives = 57/96 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE ++ + ++ L+ E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSIKTNFILPEAVAVLDAVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H+F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHSFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[92][TOP]
>UniRef100_B0A7Y1 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0A7Y1_9CLOT
Length = 187
Score = 67.4 bits (163), Expect = 6e-10
Identities = 36/93 (38%), Positives = 56/93 (60%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
R K + K + + + + +D + +++GE +V + R K FDM P++ EA+ Q
Sbjct: 93 RRYKNKLKGKYQSKGQESIRFQNIEDNAAEDKDGEFDIV-IERHKKFDMKPMSPEEAVLQ 151
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
+ V H FY FRN +T EI+IVY+R+ GGYGLI
Sbjct: 152 MELVGHDFYMFRNIDTDEISIVYRRETGGYGLI 184
[93][TOP]
>UniRef100_A3YVD7 Light repressed protein A-like protein n=1 Tax=Synechococcus sp. WH
5701 RepID=A3YVD7_9SYNE
Length = 195
Score = 67.4 bits (163), Expect = 6e-10
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -2
Query: 406 VEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
V VR KYF MP +++ +A+ QL +DH FY FR E +G + +VY+R GG+G+I PK
Sbjct: 136 VPAVRRKYFSMPAMSLDQALHQLELIDHDFYVFREESSGGLQVVYRRNHGGFGVIQPK 193
[94][TOP]
>UniRef100_B9NHV3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NHV3_POPTR
Length = 51
Score = 67.4 bits (163), Expect = 6e-10
Identities = 40/71 (56%), Positives = 42/71 (59%)
Frame = -2
Query: 376 MPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLM 197
MPPLTV EAIEQL NVDHAFY FRNEET NG A +LE L+
Sbjct: 1 MPPLTVDEAIEQLENVDHAFYGFRNEET--------------------ENGSAGQLELLV 40
Query: 196 VEPAREASLKE 164
VEPARE SL E
Sbjct: 41 VEPAREPSLVE 51
[95][TOP]
>UniRef100_Q5SIS0 Ribosomal subunit interface protein n=2 Tax=Thermus thermophilus
RepID=Q5SIS0_THET8
Length = 186
Score = 67.0 bits (162), Expect = 8e-10
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P EEEG +VR K F+M P+ EA Q+ + H+F+ FRN +T EIN++Y+RK+G
Sbjct: 123 PEEEEGP----RIVRVKRFEMKPMDPEEAAFQMEALGHSFFVFRNAKTDEINVIYRRKDG 178
Query: 256 GYGLIIP 236
YGLI P
Sbjct: 179 NYGLIEP 185
[96][TOP]
>UniRef100_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Roseiflexus castenholzii DSM 13941
RepID=A7NNI5_ROSCS
Length = 198
Score = 67.0 bits (162), Expect = 8e-10
Identities = 27/69 (39%), Positives = 51/69 (73%)
Frame = -2
Query: 439 SPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKE 260
+P++EE + +VRTK F + P+ EA+EQ+ + H+F+ F++ +TG++N++Y+R++
Sbjct: 129 APIDEEEQRP--RIVRTKEFQVKPMYSDEAVEQMELLGHSFFIFQDADTGKLNVLYRRQD 186
Query: 259 GGYGLIIPK 233
G YGLI+P+
Sbjct: 187 GNYGLIVPE 195
[97][TOP]
>UniRef100_A2CBL6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9303 RepID=A2CBL6_PROM3
Length = 195
Score = 67.0 bits (162), Expect = 8e-10
Identities = 27/52 (51%), Positives = 39/52 (75%)
Frame = -2
Query: 397 VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
VR KYF MPP++V +A QL +DH FY FR +E+G++ ++Y+R GGYG+I
Sbjct: 140 VRRKYFAMPPMSVEQARHQLDLIDHDFYLFREQESGQLQVIYRRNHGGYGVI 191
[98][TOP]
>UniRef100_B7IPV2 Ribosomal subunit interface protein n=5 Tax=Bacillus cereus group
RepID=B7IPV2_BACC2
Length = 180
Score = 67.0 bits (162), Expect = 8e-10
Identities = 39/96 (40%), Positives = 57/96 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE ++ + ++ ++E E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSMKTNFILPEAVAVMDEVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[99][TOP]
>UniRef100_B6G1P8 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6G1P8_9CLOT
Length = 190
Score = 67.0 bits (162), Expect = 8e-10
Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDDDISP-LEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVD 326
++ K R P + E ++++ L+ E E V + R K F++ P+++ EAI Q+ D
Sbjct: 99 DKFKTRVPGNFSIRYEGIEELAQELDYEVEEPEVVIERRKKFNLKPMSIEEAILQMNLTD 158
Query: 325 HAFYAFRNEETGEINIVYKRKEGGYGLI 242
H FY F++ E+ EI +VYKRKEGGYGLI
Sbjct: 159 HDFYMFKDRESFEICLVYKRKEGGYGLI 186
[100][TOP]
>UniRef100_C5D7S1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. WCH70 RepID=C5D7S1_GEOSW
Length = 182
Score = 66.6 bits (161), Expect = 1e-09
Identities = 38/93 (40%), Positives = 55/93 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+R +V + ++++ P EE E E+VRTK+F + P+ EAI Q
Sbjct: 90 KHKTKVNR-KLRNKETKQVLVTQNNN--PPVEENEEEEFEIVRTKHFSLKPMDSEEAILQ 146
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
+ + H F+ F N ET NIVY+RK+G YGLI
Sbjct: 147 MNLLGHNFFIFTNAETNRTNIVYRRKDGKYGLI 179
[101][TOP]
>UniRef100_A8G3B2 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3B2_PROM2
Length = 194
Score = 66.6 bits (161), Expect = 1e-09
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -2
Query: 445 DISPLEEEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYK 269
D + L++ EA+L E ++ KYF+M P++ EA +QL +DH FY FRN + E+ ++YK
Sbjct: 123 DEALLKDGIEASLPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYVFRNNKNNELQVIYK 182
Query: 268 RKEGGYGLIIPK 233
R GGYGLI K
Sbjct: 183 RNHGGYGLIQSK 194
[102][TOP]
>UniRef100_A6TLE5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alkaliphilus metalliredigens QYMF RepID=A6TLE5_ALKMQ
Length = 177
Score = 66.6 bits (161), Expect = 1e-09
Identities = 31/72 (43%), Positives = 47/72 (65%)
Frame = -2
Query: 448 DDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYK 269
++I E+ ++ ++V+TK F M P+ EA+ Q+ + H FY F N ET E+N+VYK
Sbjct: 105 ENIPTYVEDVDSDESKIVKTKRFAMKPMHSEEAVLQMELIGHNFYMFANAETDEVNVVYK 164
Query: 268 RKEGGYGLIIPK 233
RK+G YGLI P+
Sbjct: 165 RKDGNYGLIEPE 176
[103][TOP]
>UniRef100_A4XJ41 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Caldicellulosiruptor saccharolyticus DSM 8903
RepID=A4XJ41_CALS8
Length = 182
Score = 66.6 bits (161), Expect = 1e-09
Identities = 35/89 (39%), Positives = 54/89 (60%)
Frame = -2
Query: 499 RAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHA 320
RAK E + EE + EE GE ++ +TK F + P++V EAI Q+ + H+
Sbjct: 96 RAKDAESLRYMTFEEEAQQETNQEENGE---FKIAKTKRFPIKPMSVDEAILQMNLLGHS 152
Query: 319 FYAFRNEETGEINIVYKRKEGGYGLIIPK 233
F+ F N++T ++N+VYKR +G YGLI P+
Sbjct: 153 FFVFLNQDTDKVNVVYKRNDGAYGLIEPE 181
[104][TOP]
>UniRef100_Q2B1U0 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. NRRL
B-14911 RepID=Q2B1U0_9BACI
Length = 184
Score = 66.6 bits (161), Expect = 1e-09
Identities = 35/70 (50%), Positives = 46/70 (65%)
Frame = -2
Query: 451 DDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVY 272
D+ +P+ EE + L EVVR K FD+ P+ EAI Q+ + H+FY F N ET N+VY
Sbjct: 113 DEPEAPVLEEEDNDL-EVVRQKSFDLKPMDNEEAILQMNLLGHSFYVFTNAETNRTNVVY 171
Query: 271 KRKEGGYGLI 242
KRK+G YGLI
Sbjct: 172 KRKDGRYGLI 181
[105][TOP]
>UniRef100_A9VQA3 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Bacillus cereus group RepID=A9VQA3_BACWK
Length = 180
Score = 66.6 bits (161), Expect = 1e-09
Identities = 39/96 (40%), Positives = 57/96 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE ++ + ++ L+ E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSMKTNFILPEAVAVLDAVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H+F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHSFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[106][TOP]
>UniRef100_C2ZFA1 Ribosome-associated factor Y n=2 Tax=Bacillus cereus
RepID=C2ZFA1_BACCE
Length = 180
Score = 66.6 bits (161), Expect = 1e-09
Identities = 40/96 (41%), Positives = 56/96 (58%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE V+ + ++ L+ E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSVKTNFILPEAVAVLDAVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[107][TOP]
>UniRef100_C2YZ14 Ribosome-associated factor Y n=1 Tax=Bacillus cereus AH1271
RepID=C2YZ14_BACCE
Length = 180
Score = 66.6 bits (161), Expect = 1e-09
Identities = 40/96 (41%), Positives = 56/96 (58%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE V+ + ++ L+ E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSVKTNFILPEAVAVLDAVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[108][TOP]
>UniRef100_B9P0E9 Light repressed protein A n=1 Tax=Prochlorococcus marinus str. MIT
9202 RepID=B9P0E9_PROMA
Length = 194
Score = 66.6 bits (161), Expect = 1e-09
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -2
Query: 445 DISPLEEEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYK 269
D + L++ EA+L E ++ KYF+M P++ EA +QL +DH FY FRN + E+ ++YK
Sbjct: 123 DEALLKDGIEASLPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYVFRNSKNNELQVIYK 182
Query: 268 RKEGGYGLIIPK 233
R GGYGLI K
Sbjct: 183 RNHGGYGLIQSK 194
[109][TOP]
>UniRef100_Q7V8W0 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
str. MIT 9313 RepID=Q7V8W0_PROMM
Length = 195
Score = 66.2 bits (160), Expect = 1e-09
Identities = 27/52 (51%), Positives = 39/52 (75%)
Frame = -2
Query: 397 VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
VR KYF MPP++V +A QL +DH FY FR +E+G++ ++Y+R GGYG+I
Sbjct: 140 VRRKYFAMPPMSVEQARYQLDLIDHDFYLFREQESGQLQVIYRRNHGGYGVI 191
[110][TOP]
>UniRef100_B8FYZ1 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Desulfitobacterium hafniense RepID=B8FYZ1_DESHD
Length = 175
Score = 66.2 bits (160), Expect = 1e-09
Identities = 38/89 (42%), Positives = 50/89 (56%)
Frame = -2
Query: 499 RAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHA 320
R KV + E+E P +DD EVVR K F P++V EAI Q+ V H
Sbjct: 97 RTKVLKDHEIEHPALYEDDSE-----------EVVRHKKFGTKPMSVEEAIMQMNLVGHN 145
Query: 319 FYAFRNEETGEINIVYKRKEGGYGLIIPK 233
FYAF N +T IN+VY+R+ G YGL+ P+
Sbjct: 146 FYAFTNMDTNVINVVYRRRSGDYGLLEPE 174
[111][TOP]
>UniRef100_UPI00017F5ACC putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
ATCC 43255 RepID=UPI00017F5ACC
Length = 185
Score = 65.9 bits (159), Expect = 2e-09
Identities = 34/63 (53%), Positives = 44/63 (69%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
+EE E ++E R K F++ P++ EAI Q+ V H FY FRN++ EINIVYKRK GGY
Sbjct: 122 DEEDENIVIE--RRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDNFEINIVYKRKAGGY 179
Query: 250 GLI 242
GLI
Sbjct: 180 GLI 182
[112][TOP]
>UniRef100_UPI0001794B34 hypothetical protein CLOSPO_00786 n=1 Tax=Clostridium sporogenes
ATCC 15579 RepID=UPI0001794B34
Length = 175
Score = 65.9 bits (159), Expect = 2e-09
Identities = 28/68 (41%), Positives = 46/68 (67%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P E GE ++V+TK F M P++ EA+ Q+ + H F+ ++N +T E+N++Y+RK+G
Sbjct: 107 PDYESGENKETQIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTEEVNVIYRRKDG 166
Query: 256 GYGLIIPK 233
YGLI P+
Sbjct: 167 NYGLIEPE 174
[113][TOP]
>UniRef100_Q5WDF7 Ribosomal protein S30EA n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WDF7_BACSK
Length = 184
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -2
Query: 448 DDISPLEEE-GEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVY 272
+++ PL +E E +EVVRTK F++ P+ EAI Q+ + H F+ F + E+G N+VY
Sbjct: 111 NELEPLRDEVAEDDELEVVRTKRFNLKPMDAEEAILQMDLLGHNFFVFSDAESGSTNVVY 170
Query: 271 KRKEGGYGLIIPK 233
+RK+G YGLI P+
Sbjct: 171 RRKDGKYGLIEPE 183
[114][TOP]
>UniRef100_B2A816 Sigma 54 modulation protein, SSU ribosomal protein S30P n=1
Tax=Natranaerobius thermophilus JW/NM-WN-LF
RepID=B2A816_NATTJ
Length = 178
Score = 65.9 bits (159), Expect = 2e-09
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = -2
Query: 427 EEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYG 248
EEG+ E+V+TK F + P+T EA+ Q+ + H F+ FRN ET E+N+VY+RK+G YG
Sbjct: 115 EEGKDP--EIVKTKRFAIKPMTPEEAVLQMELIGHDFFVFRNAETEEVNVVYRRKDGNYG 172
Query: 247 LIIPK 233
I P+
Sbjct: 173 QIEPE 177
[115][TOP]
>UniRef100_B0TGY7 Sigma 54 modulation protein/ribosomal protein s30ae n=1
Tax=Heliobacterium modesticaldum Ice1 RepID=B0TGY7_HELMI
Length = 174
Score = 65.9 bits (159), Expect = 2e-09
Identities = 31/65 (47%), Positives = 44/65 (67%)
Frame = -2
Query: 427 EEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYG 248
E+ AT VVR+K F + P+ V EAI Q+ + H+F+ F N ET ++N+VY RK+G YG
Sbjct: 108 EKNGATEPRVVRSKRFALKPMPVDEAIMQMNLIGHSFFVFSNAETEQVNVVYLRKDGNYG 167
Query: 247 LIIPK 233
LI P+
Sbjct: 168 LIEPE 172
[116][TOP]
>UniRef100_A8MJN7 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJN7_ALKOO
Length = 181
Score = 65.9 bits (159), Expect = 2e-09
Identities = 30/64 (46%), Positives = 42/64 (65%)
Frame = -2
Query: 427 EEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYG 248
E G A+ ++VRTK F + P+ EA+ Q+ + H FY F + ET E+ +VYKRK+G YG
Sbjct: 113 ENGNASESKIVRTKRFSIKPMNAEEAVLQMELLGHNFYVFLDGETDEVGVVYKRKDGNYG 172
Query: 247 LIIP 236
LI P
Sbjct: 173 LIEP 176
[117][TOP]
>UniRef100_Q1PJW9 Light repressed protein A n=1 Tax=uncultured Prochlorococcus
marinus clone HF10-88F10 RepID=Q1PJW9_PROMA
Length = 194
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = -2
Query: 445 DISPLEEEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYK 269
D + L++ EA+L E ++ KYF+M P++ EA +QL +DH FY FRN++ ++ ++YK
Sbjct: 123 DEALLKDGIEASLPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYVFRNKKNNQLQVIYK 182
Query: 268 RKEGGYGLIIPK 233
R GGYGLI K
Sbjct: 183 RNHGGYGLIQSK 194
[118][TOP]
>UniRef100_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Atopobium parvulum DSM 20469 RepID=C8W7H2_ATOPD
Length = 196
Score = 65.9 bits (159), Expect = 2e-09
Identities = 33/80 (41%), Positives = 45/80 (56%)
Frame = -2
Query: 472 VEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEET 293
+E+P E+ DD ++VR KY D+ P+T EA+ Q + H FY F N T
Sbjct: 123 IEIPAEDLDD-------------QLVREKYVDLEPMTEEEALVQTDLLGHDFYVFVNSST 169
Query: 292 GEINIVYKRKEGGYGLIIPK 233
G N++Y RK GGYG+I PK
Sbjct: 170 GLTNVIYHRKNGGYGIIKPK 189
[119][TOP]
>UniRef100_B0KBV4 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Thermoanaerobacter RepID=B0KBV4_THEP3
Length = 181
Score = 65.9 bits (159), Expect = 2e-09
Identities = 37/89 (41%), Positives = 52/89 (58%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDH 323
NR E + E+P ++ EEEG E+V+TK F + P++ EAI Q+ + H
Sbjct: 95 NRFGSNESIRFEIP-PAYEEAKGEEEEGS---FEIVKTKRFPIKPMSPEEAILQMNLLGH 150
Query: 322 AFYAFRNEETGEINIVYKRKEGGYGLIIP 236
F+ F N +T IN+VYKRK+G YGLI P
Sbjct: 151 NFFVFTNADTDTINVVYKRKDGKYGLIEP 179
[120][TOP]
>UniRef100_C4GCR0 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles
DSM 14600 RepID=C4GCR0_9FIRM
Length = 176
Score = 65.9 bits (159), Expect = 2e-09
Identities = 28/65 (43%), Positives = 43/65 (66%)
Frame = -2
Query: 427 EEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYG 248
+E E +++VRTK FD+ P+ +A Q+ + H+F+ F N ET +N+VY+RK G YG
Sbjct: 111 DEDEEEEIKIVRTKKFDLKPMYAEDACAQMELLGHSFFVFTNAETDAVNVVYRRKNGSYG 170
Query: 247 LIIPK 233
LI P+
Sbjct: 171 LIEPE 175
[121][TOP]
>UniRef100_C2KX79 Ribosome-associated inhibitor A n=1 Tax=Oribacterium sinus F0268
RepID=C2KX79_9FIRM
Length = 176
Score = 65.9 bits (159), Expect = 2e-09
Identities = 29/68 (42%), Positives = 47/68 (69%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P ++E E +++VRTK+ D+ P+T EA Q+ + H+F+ F++ TG++N+VYKRK
Sbjct: 111 PAQDEEE---IKIVRTKHIDLKPMTAEEACLQMELLGHSFFVFQDGNTGKVNVVYKRKAN 167
Query: 256 GYGLIIPK 233
YGLI P+
Sbjct: 168 SYGLIEPE 175
[122][TOP]
>UniRef100_C1FQQ9 Ribosomal subunit interface protein n=2 Tax=Clostridium botulinum
RepID=C1FQQ9_CLOBJ
Length = 175
Score = 65.9 bits (159), Expect = 2e-09
Identities = 28/68 (41%), Positives = 46/68 (67%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P E GE ++V+TK F M P++ EA+ Q+ + H F+ ++N +T E+N++Y+RK+G
Sbjct: 107 PDYESGENKETQIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTEEVNVIYRRKDG 166
Query: 256 GYGLIIPK 233
YGLI P+
Sbjct: 167 NYGLIEPE 174
[123][TOP]
>UniRef100_A3ZA02 Light repressed protein A-like protein n=1 Tax=Synechococcus sp.
RS9917 RepID=A3ZA02_9SYNE
Length = 195
Score = 65.9 bits (159), Expect = 2e-09
Identities = 27/52 (51%), Positives = 38/52 (73%)
Frame = -2
Query: 397 VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
VR KYF MPP+++ EA QL +DH FY FR+ TG++ ++Y+R GGYG+I
Sbjct: 140 VRRKYFAMPPMSLEEARHQLDVIDHDFYLFRDASTGDLQVIYRRNHGGYGVI 191
[124][TOP]
>UniRef100_UPI0001B41AC9 ribosomal subunit interface protein n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41AC9
Length = 111
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/96 (40%), Positives = 56/96 (58%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE ++ + ++ L+ E L E+VRTK FD+ P+ V EAI Q
Sbjct: 18 KHKTKVNR-KLREKGSMKTNFILPEAVAVLDAVEEDEL-ELVRTKRFDLKPMDVEEAILQ 75
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 76 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 111
[125][TOP]
>UniRef100_B7GL70 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Anoxybacillus
flavithermus WK1 RepID=B7GL70_ANOFW
Length = 182
Score = 65.5 bits (158), Expect = 2e-09
Identities = 41/93 (44%), Positives = 51/93 (54%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE V L ++ E E E EVVRTK F + P+ EAI Q
Sbjct: 90 KHKTKVNR-KMREKEANGVTLTATVPVATEEHEEEE--FEVVRTKRFSLKPMDSEEAILQ 146
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
+ + H FY F N ET N+VYKRK+G YGLI
Sbjct: 147 MNMLGHNFYVFINAETNRTNVVYKRKDGKYGLI 179
[126][TOP]
>UniRef100_A5CYJ2 Ribosome-associated protein Y n=1 Tax=Pelotomaculum
thermopropionicum SI RepID=A5CYJ2_PELTS
Length = 175
Score = 65.5 bits (158), Expect = 2e-09
Identities = 32/68 (47%), Positives = 46/68 (67%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P EE+G +VRTK F + P+ V EAI Q+ + H+F+ F N ET ++N+VY+RK+G
Sbjct: 111 PEEEDGP----RLVRTKRFAIKPMPVEEAILQMNLLGHSFFVFSNAETEQVNVVYRRKDG 166
Query: 256 GYGLIIPK 233
YGLI P+
Sbjct: 167 NYGLIEPE 174
[127][TOP]
>UniRef100_Q1PKX8 Light repressed protein A-like protein n=1 Tax=uncultured
Prochlorococcus marinus clone ASNC2259
RepID=Q1PKX8_PROMA
Length = 194
Score = 65.5 bits (158), Expect = 2e-09
Identities = 27/55 (49%), Positives = 39/55 (70%)
Frame = -2
Query: 397 VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
++ KYF+M P++ EA +QL +DH FY FRN++ E+ ++YKR GGYGLI K
Sbjct: 140 IKNKYFEMTPISSDEARKQLDLIDHDFYVFRNKKNNELQVIYKRNHGGYGLIQSK 194
[128][TOP]
>UniRef100_Q063T8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. BL107 RepID=Q063T8_9SYNE
Length = 195
Score = 65.5 bits (158), Expect = 2e-09
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Frame = -2
Query: 457 EEDDDISPLE----EEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEET 293
EE D S +E + EA L E VR KYF MPP+T+ +A QL +DH FY F++ T
Sbjct: 115 EEVSDESVVEGSLVDGKEAQLPEPGVRRKYFSMPPMTLDDARHQLDVIDHDFYLFKDSAT 174
Query: 292 GEINIVYKRKEGGYGLI 242
G + ++Y+R GGYG+I
Sbjct: 175 GALQVIYRRNHGGYGVI 191
[129][TOP]
>UniRef100_B0K3A9 Sigma 54 modulation protein/ribosomal protein S30EA n=3
Tax=Thermoanaerobacter RepID=B0K3A9_THEPX
Length = 181
Score = 65.5 bits (158), Expect = 2e-09
Identities = 37/89 (41%), Positives = 52/89 (58%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDH 323
NR E + E+P ++ EEEG E+V+TK F + P++ EAI Q+ + H
Sbjct: 95 NRFGSNESIRFEIP-PVYEEAKGEEEEGS---FEIVKTKRFPIKPMSPEEAILQMNLLGH 150
Query: 322 AFYAFRNEETGEINIVYKRKEGGYGLIIP 236
F+ F N +T IN+VYKRK+G YGLI P
Sbjct: 151 NFFVFTNADTDTINVVYKRKDGKYGLIEP 179
[130][TOP]
>UniRef100_C3GRH2 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1 RepID=C3GRH2_BACTU
Length = 180
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/96 (40%), Positives = 56/96 (58%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE ++ + ++ L+ E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSMKTNFILPEAVAVLDAVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[131][TOP]
>UniRef100_A0RKX8 Sigma 54 modulation protein / SSU ribosomal protein S30P n=26
Tax=Bacillus cereus group RepID=A0RKX8_BACAH
Length = 180
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/96 (40%), Positives = 56/96 (58%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR K+RE ++ + ++ L+ E L E+VRTK FD+ P+ V EAI Q
Sbjct: 87 KHKTKVNR-KLREKGSMKTNFILPEAVAVLDAVEEDEL-ELVRTKRFDLKPMDVEEAILQ 144
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E N+VY RK+G YGLI K
Sbjct: 145 MDMLGHNFFVFTNADTNETNVVYGRKDGKYGLIETK 180
[132][TOP]
>UniRef100_A6NQP5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus
ATCC 29799 RepID=A6NQP5_9BACE
Length = 181
Score = 65.5 bits (158), Expect = 2e-09
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = -2
Query: 454 EDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEET-GEINI 278
++++IS + E +VRTK F + P++V EAI Q+ VDH F+AFR+ + G +
Sbjct: 106 DEEEISSFVPDTEEEEFRIVRTKKFPIRPMSVEEAILQMNLVDHTFFAFRDADADGSFAV 165
Query: 277 VYKRKEGGYGLII 239
VYKR +GGYGLI+
Sbjct: 166 VYKRNDGGYGLIV 178
[133][TOP]
>UniRef100_UPI00017F60C6 putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F60C6
Length = 185
Score = 65.1 bits (157), Expect = 3e-09
Identities = 34/63 (53%), Positives = 44/63 (69%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
+EE E ++E R K F++ P++ EAI Q+ V H FY FRN++ EINIVYKRK GGY
Sbjct: 122 DEEYENIVIE--RRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDNFEINIVYKRKAGGY 179
Query: 250 GLI 242
GLI
Sbjct: 180 GLI 182
[134][TOP]
>UniRef100_Q7U8F3 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U8F3_SYNPX
Length = 195
Score = 64.7 bits (156), Expect = 4e-09
Identities = 26/56 (46%), Positives = 41/56 (73%)
Frame = -2
Query: 397 VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKG 230
VR KYF MPP+++ EA QL +DH FY FR++++ ++ ++Y+R GGYG+I +G
Sbjct: 140 VRRKYFAMPPMSLEEARRQLDLIDHDFYLFRDKDSDQLQVIYRRNHGGYGVIQARG 195
[135][TOP]
>UniRef100_A9KS11 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium phytofermentans ISDg RepID=A9KS11_CLOPH
Length = 178
Score = 64.7 bits (156), Expect = 4e-09
Identities = 30/67 (44%), Positives = 40/67 (59%)
Frame = -2
Query: 433 LEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGG 254
L E+ + + + R K F M P+ EA Q+ + H FY FRN ET E+N+VYKRK
Sbjct: 111 LNEDSDEEDINITRVKRFAMKPMDAEEACVQMELLGHNFYVFRNAETDEVNVVYKRKGNS 170
Query: 253 YGLIIPK 233
YGLI P+
Sbjct: 171 YGLIEPE 177
[136][TOP]
>UniRef100_B8BRE6 Light-repressed protein a n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8BRE6_THAPS
Length = 198
Score = 64.7 bits (156), Expect = 4e-09
Identities = 41/98 (41%), Positives = 55/98 (56%)
Frame = -2
Query: 526 HGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAI 347
HG G N A+V +EV+ E +D EEE + V TK P+++ EAI
Sbjct: 107 HGGPNMGENIAEVLNAIEVD---ESEDGA---EEESYIDPDQAVVTKV-KSTPISIKEAI 159
Query: 346 EQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
L +DH FY FR+EET E+++VYKR GG GLI P+
Sbjct: 160 FALDYIDHDFYVFRDEETNEVSVVYKRNAGGVGLIQPE 197
[137][TOP]
>UniRef100_UPI0001694CB6 ribosomal subunit interface protein n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694CB6
Length = 182
Score = 64.3 bits (155), Expect = 5e-09
Identities = 35/85 (41%), Positives = 49/85 (57%)
Frame = -2
Query: 490 VREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYA 311
V EP V +EE++ E+VRTK F + P+ V EAI Q+ V H F+
Sbjct: 109 VMEPSSVANTVEEEE-------------YELVRTKRFTLKPMDVEEAILQMNMVGHNFFV 155
Query: 310 FRNEETGEINIVYKRKEGGYGLIIP 236
F N +T ++N+VYKR++G YGLI P
Sbjct: 156 FANMDTDQVNVVYKREDGRYGLIEP 180
[138][TOP]
>UniRef100_Q3AI28 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. CC9605 RepID=Q3AI28_SYNSC
Length = 195
Score = 64.3 bits (155), Expect = 5e-09
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Frame = -2
Query: 448 DDISPLE----EEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEI 284
+D SP+E + EA L + VR KYF MPP+ + EA QL +DH FY FR +E+ ++
Sbjct: 118 NDASPVEASLLQGREAELPDPGVRRKYFAMPPMGLEEARRQLDLIDHDFYLFREKESDQL 177
Query: 283 NIVYKRKEGGYGLI 242
++Y+R GGYG+I
Sbjct: 178 QVIYRRNHGGYGVI 191
[139][TOP]
>UniRef100_B9EAE7 Ribosomal subunit interface protein homolog n=1 Tax=Macrococcus
caseolyticus JCSC5402 RepID=B9EAE7_MACCJ
Length = 186
Score = 64.3 bits (155), Expect = 5e-09
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P EE+G+ +E++R+K F + P+ EA+ Q+ + H F+ F + ET E NIVYKRK+G
Sbjct: 118 PEEEKGDE--IEIIRSKQFALKPMDAEEAVLQMNMLGHDFFIFNDRETNETNIVYKRKDG 175
Query: 256 GYGLI 242
YGLI
Sbjct: 176 KYGLI 180
[140][TOP]
>UniRef100_A4J928 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Desulfotomaculum reducens MI-1 RepID=A4J928_DESRM
Length = 173
Score = 64.3 bits (155), Expect = 5e-09
Identities = 29/71 (40%), Positives = 46/71 (64%)
Frame = -2
Query: 445 DISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKR 266
D+ + E+ E +V++TK F + P+ + EAI Q+ + H F+ F N ET + N++YKR
Sbjct: 102 DLGVVVEDMEDETPQVIKTKRFAIKPMALDEAIMQMNLLGHDFFVFSNAETEQTNVIYKR 161
Query: 265 KEGGYGLIIPK 233
K+G YGLI P+
Sbjct: 162 KDGNYGLIEPE 172
[141][TOP]
>UniRef100_C3WBJ3 Sigma(54) modulation protein n=1 Tax=Fusobacterium mortiferum ATCC
9817 RepID=C3WBJ3_FUSMR
Length = 183
Score = 64.3 bits (155), Expect = 5e-09
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Frame = -2
Query: 502 NRAKVREPVEVEVPL----EEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLV 335
++ K+R V+ P+ + D + + +E+E +V+V Y P+ V EAI QL
Sbjct: 92 HKDKIRTAVQSREPMIRKVKYDPETNTVEKEAAVNVVKV----YLPPKPMDVEEAILQLE 147
Query: 334 NVDHAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
++ AF+ F N ETGE+NIVYKRK+G YG I P
Sbjct: 148 ILNRAFFPFTNAETGEMNIVYKRKDGDYGHIEP 180
[142][TOP]
>UniRef100_C2C307 Ribosome-associated inhibitor protein Y n=1 Tax=Listeria grayi DSM
20601 RepID=C2C307_LISGR
Length = 189
Score = 64.3 bits (155), Expect = 5e-09
Identities = 32/71 (45%), Positives = 44/71 (61%)
Frame = -2
Query: 454 EDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIV 275
E +D +P EE +E+VRTK F + P+ EA+ Q+ + H F+ F + ET NIV
Sbjct: 114 EINDSTPSEETDSDYDIEIVRTKSFSLKPMDSEEAVLQMNLLGHNFFVFNDAETNGTNIV 173
Query: 274 YKRKEGGYGLI 242
YKRK+G YGLI
Sbjct: 174 YKRKDGKYGLI 184
[143][TOP]
>UniRef100_C0BAM2 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC
27758 RepID=C0BAM2_9FIRM
Length = 189
Score = 64.3 bits (155), Expect = 5e-09
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = -2
Query: 418 EATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLII 239
E+ +E+VRTK F + P+ +A Q+ + H FY F N ET E+N+VYKRK G YGLI
Sbjct: 126 ESDEIEIVRTKRFGIKPMFPEDACIQMELLGHNFYVFSNAETDEVNVVYKRKNGTYGLIE 185
Query: 238 PK 233
P+
Sbjct: 186 PE 187
[144][TOP]
>UniRef100_A5KKP2 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC
27756 RepID=A5KKP2_9FIRM
Length = 198
Score = 64.3 bits (155), Expect = 5e-09
Identities = 31/76 (40%), Positives = 48/76 (63%)
Frame = -2
Query: 460 LEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEIN 281
+E DD+ S +E + +VRTK F + P+ +A Q+ + H+F+ F N ET E+N
Sbjct: 127 IESDDESSDDDE------IRIVRTKKFGIKPMFPEDACIQMELLGHSFFVFSNAETDEVN 180
Query: 280 IVYKRKEGGYGLIIPK 233
+VYKRK+G +GLI P+
Sbjct: 181 VVYKRKDGSFGLIEPE 196
[145][TOP]
>UniRef100_UPI0001789185 sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789185
Length = 188
Score = 63.9 bits (154), Expect = 7e-09
Identities = 31/54 (57%), Positives = 38/54 (70%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
EVVRTK F M P+ V EAI Q+ V H F+ F N +T E+N+VYKR +G YGLI
Sbjct: 132 EVVRTKRFTMKPMDVEEAILQMNMVGHNFFVFSNIDTQEVNVVYKRDDGKYGLI 185
[146][TOP]
>UniRef100_Q898W3 SSU ribosomal protein S30P n=1 Tax=Clostridium tetani
RepID=Q898W3_CLOTE
Length = 176
Score = 63.9 bits (154), Expect = 7e-09
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
++V+TK F + P++ EA+ Q+ + H F+ F + +TGE+N+VYKRK+G YGLI P+
Sbjct: 119 KIVKTKRFAIKPMSSEEAVLQMELIGHNFFVFESADTGEVNVVYKRKDGNYGLIEPE 175
[147][TOP]
>UniRef100_A5UVY5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Roseiflexus sp. RS-1 RepID=A5UVY5_ROSS1
Length = 193
Score = 63.9 bits (154), Expect = 7e-09
Identities = 32/96 (33%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Frame = -2
Query: 511 KGFNRAKVREP---VEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
K + R K+R + +P ++ +EE E +VRTK F + P+ EA+EQ
Sbjct: 97 KHWRRGKLRRQGGQIVEALPELAAPSLADTQEEEERP--RIVRTKEFQVKPMYSDEAVEQ 154
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F++ +TG++N++Y+R++G YGLI+P+
Sbjct: 155 MELLGHNFFIFQDADTGKLNVLYRRQDGNYGLIVPE 190
[148][TOP]
>UniRef100_C8NDQ1 Ribosomal subunit interface protein n=1 Tax=Granulicatella adiacens
ATCC 49175 RepID=C8NDQ1_9LACT
Length = 186
Score = 63.9 bits (154), Expect = 7e-09
Identities = 35/93 (37%), Positives = 55/93 (59%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
+H NR + ++ +P + +P EEE T +E+VRTK D+ P+ EA+ Q
Sbjct: 97 KHKTKINRKSREKGFDIVLPTLPE---APEEEE---TGLEIVRTKRIDLKPMDSEEAVLQ 150
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
+ + H F+ +++ ET E NIVY+RK+G YGLI
Sbjct: 151 MNMLGHNFFIYQDAETNETNIVYRRKDGKYGLI 183
[149][TOP]
>UniRef100_B6G8G1 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
13279 RepID=B6G8G1_9ACTN
Length = 194
Score = 63.9 bits (154), Expect = 7e-09
Identities = 38/93 (40%), Positives = 55/93 (59%)
Frame = -2
Query: 511 KGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVN 332
+G + A+V PVE P+ + D+ EEE + ++VR K ++ P+T +A+ Q
Sbjct: 104 QGLSAAEVA-PVE---PVADLADLLIPEEEDD----QLVRVKEIELTPMTEEQALVQTDL 155
Query: 331 VDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ H FY F N TG IN+VY RK GGYG+I PK
Sbjct: 156 LGHDFYVFENSTTGLINVVYHRKNGGYGIIKPK 188
[150][TOP]
>UniRef100_Q7VDH9 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus
RepID=Q7VDH9_PROMA
Length = 195
Score = 63.5 bits (153), Expect = 9e-09
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = -2
Query: 532 SDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEV-VRTKYFDMPPLTVS 356
SDH H +RA + P EV LE+ L E EA L + +R KYF M P+ +
Sbjct: 98 SDH--HHSPGHRASIT-PTTEEV-LEDKSINGSLVEGKEAKLPKPGIRRKYFPMHPMNIE 153
Query: 355 EAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+A QL +DH FY F+ E+ ++ ++Y+RK GGYG+I K
Sbjct: 154 QAQHQLDLIDHDFYLFKEAESEQLQVIYRRKNGGYGVIQAK 194
[151][TOP]
>UniRef100_Q2RLX7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLX7_MOOTA
Length = 190
Score = 63.5 bits (153), Expect = 9e-09
Identities = 30/68 (44%), Positives = 45/68 (66%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P EE G ++RTK F + P+ V EAI Q+ + H+F+ F N ET E+N++Y+R++G
Sbjct: 124 PEEENGPEP--RLIRTKRFPIKPMPVEEAILQMNLLGHSFFVFSNAETEEVNVLYRRRDG 181
Query: 256 GYGLIIPK 233
YGLI P+
Sbjct: 182 NYGLIEPE 189
[152][TOP]
>UniRef100_C7ICT8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium papyrosolvens DSM 2782
RepID=C7ICT8_9CLOT
Length = 176
Score = 63.5 bits (153), Expect = 9e-09
Identities = 30/72 (41%), Positives = 48/72 (66%)
Frame = -2
Query: 448 DDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYK 269
D+ +++ E T +VVR+K F + P+ V EAI Q+ + H F+ F N ++ ++N+VYK
Sbjct: 104 DNTKFIDDVQEETEFKVVRSKRFAVKPMDVEEAILQMNLLGHEFFMFYNADSRQVNVVYK 163
Query: 268 RKEGGYGLIIPK 233
RK+G YGLI P+
Sbjct: 164 RKDGNYGLIEPE 175
[153][TOP]
>UniRef100_C6Q126 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium carboxidivorans P7 RepID=C6Q126_9CLOT
Length = 175
Score = 63.5 bits (153), Expect = 9e-09
Identities = 28/71 (39%), Positives = 48/71 (67%)
Frame = -2
Query: 445 DISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKR 266
D+ P ++E ++V+TK F + P++ EA+ Q+ + H F+ +++ E GE+N+VYKR
Sbjct: 108 DLEPKDKEES----KIVKTKRFAIKPMSSEEAVLQMELLGHNFFVYKDAENGEVNVVYKR 163
Query: 265 KEGGYGLIIPK 233
K+G YGLI P+
Sbjct: 164 KDGNYGLIEPE 174
[154][TOP]
>UniRef100_B7AN97 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus
ATCC 43243 RepID=B7AN97_9BACE
Length = 179
Score = 63.5 bits (153), Expect = 9e-09
Identities = 33/96 (34%), Positives = 55/96 (57%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
R +K + + + + +E D ++++ + V+++RTK FD+ P+ EA Q
Sbjct: 86 RQLKKYKNKLIDKQQDAAAFAQEYIDKEYVDDDAD---VKIIRTKRFDVKPMDPEEACVQ 142
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H+FY F N ET +IN+VYKRK YGLI P+
Sbjct: 143 MELLGHSFYVFFNSETEQINVVYKRKGNTYGLIEPE 178
[155][TOP]
>UniRef100_B0MPR7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM
15702 RepID=B0MPR7_9FIRM
Length = 211
Score = 63.5 bits (153), Expect = 9e-09
Identities = 31/71 (43%), Positives = 50/71 (70%)
Frame = -2
Query: 448 DDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYK 269
DD+ +EE+ + EVV+ K F++ P++ EAI Q+ ++HAF+ FRN +TGEIN+VY+
Sbjct: 143 DDV--VEEQAD---FEVVKHKKFNLRPMSEDEAILQMNMLEHAFFMFRNAKTGEINVVYR 197
Query: 268 RKEGGYGLIIP 236
R +G Y ++ P
Sbjct: 198 RDDGNYAVLEP 208
[156][TOP]
>UniRef100_A8SVF0 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC
27759 RepID=A8SVF0_9FIRM
Length = 175
Score = 63.5 bits (153), Expect = 9e-09
Identities = 34/80 (42%), Positives = 47/80 (58%)
Frame = -2
Query: 472 VEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEET 293
V+ +E+DDDI ++VRTK F + P+ +A Q+ + H FY FRN ET
Sbjct: 107 VDEDIEDDDDI------------KIVRTKKFAVKPMYPEDACIQMDLLGHNFYVFRNAET 154
Query: 292 GEINIVYKRKEGGYGLIIPK 233
E+N+VYKRK YGLI P+
Sbjct: 155 DEVNVVYKRKGNTYGLIEPE 174
[157][TOP]
>UniRef100_A7B7M8 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC
29149 RepID=A7B7M8_RUMGN
Length = 185
Score = 63.5 bits (153), Expect = 9e-09
Identities = 32/75 (42%), Positives = 47/75 (62%)
Frame = -2
Query: 457 EEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINI 278
E +DD S +E + +VRTK F + P+ +A Q+ + HAF+ F N ET E+N+
Sbjct: 115 ESEDDTSVDDE------IRIVRTKRFGIKPMYPEDACIQMDLLGHAFFVFCNAETDEVNV 168
Query: 277 VYKRKEGGYGLIIPK 233
VYKRK+G +GLI P+
Sbjct: 169 VYKRKDGSFGLIEPE 183
[158][TOP]
>UniRef100_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
RepID=C6YXL0_ORYSJ
Length = 321
Score = 63.5 bits (153), Expect = 9e-09
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 12/115 (10%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVP--LEEDDD-----ISPLEE-----EGEATLVEVVRTKYFD 377
RH+KG + PV P L+ +DD + LEE + + L VVRTK F+
Sbjct: 185 RHLKG-----TKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDTVLTRVVRTKVFE 239
Query: 376 MPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEK 212
MPPL+ EA+EQL N DH F+A + G +++ G +G I+P+G+G ++
Sbjct: 240 MPPLSGEEAMEQLGNGDHTFHALPRRKNGGDEPPVQKEGGRFGPIVPQGDGPLQR 294
[159][TOP]
>UniRef100_Q0ICJ8 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
CC9311 RepID=Q0ICJ8_SYNS3
Length = 191
Score = 63.2 bits (152), Expect = 1e-08
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = -2
Query: 469 EVPLEEDDDISPLEEEGEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEET 293
+V L E L E EA L VR KYF MP +++ EA QL +DH FY FR++E+
Sbjct: 111 DVLLTERPTEDSLLEGKEAQLPSPGVRRKYFAMPAMSLEEARHQLELIDHDFYLFRDKES 170
Query: 292 GEINIVYKRKEGGYGLI 242
GE+ ++Y R GG+G+I
Sbjct: 171 GELQVIYHRNHGGFGVI 187
[160][TOP]
>UniRef100_C6D4V5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Paenibacillus sp. JDR-2 RepID=C6D4V5_PAESJ
Length = 182
Score = 63.2 bits (152), Expect = 1e-08
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = -2
Query: 442 ISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRK 263
+S ++EE E +E+VRTK F + P+ V EAI Q+ V H F+ F N + E+N+VYKR
Sbjct: 116 VSVMDEEDE---LELVRTKRFMLKPMDVEEAILQMNMVGHNFFVFSNIDNKEVNVVYKRS 172
Query: 262 EGGYGLI 242
+G YGLI
Sbjct: 173 DGKYGLI 179
[161][TOP]
>UniRef100_B8GDB0 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Chloroflexus aggregans DSM 9485 RepID=B8GDB0_CHLAD
Length = 197
Score = 63.2 bits (152), Expect = 1e-08
Identities = 28/69 (40%), Positives = 50/69 (72%)
Frame = -2
Query: 439 SPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKE 260
+P+E E A +V+RTK F + P+ V +AIEQ+ + H F+ F++ ET +I+++Y+R++
Sbjct: 130 APVETEPVA---KVIRTKTFRLRPMFVDDAIEQMELLGHTFFVFQDAETMQISVLYRRRD 186
Query: 259 GGYGLIIPK 233
G YG+I+P+
Sbjct: 187 GNYGVIVPE 195
[162][TOP]
>UniRef100_B8CYM6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Halothermothrix orenii H 168 RepID=B8CYM6_HALOH
Length = 184
Score = 63.2 bits (152), Expect = 1e-08
Identities = 34/95 (35%), Positives = 51/95 (53%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
R K + + +E E+ E+D+ P +VRTK F + P++V EA Q
Sbjct: 98 RERKQEFKKEYKEERREEILNSEEDEFKP----------RIVRTKKFAIKPMSVEEAAMQ 147
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
+ + H F+ F N T ++N+VYKRK+G YGLI P
Sbjct: 148 MDLLGHDFFVFTNANTEQVNVVYKRKDGNYGLIEP 182
[163][TOP]
>UniRef100_B5YI17 SSU ribosomal protein S30P n=1 Tax=Thermodesulfovibrio yellowstonii
DSM 11347 RepID=B5YI17_THEYD
Length = 173
Score = 63.2 bits (152), Expect = 1e-08
Identities = 34/86 (39%), Positives = 53/86 (61%)
Frame = -2
Query: 493 KVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFY 314
K +E V+ + E S L EE E T +V+ K FD+ P++ EA++QL +D F+
Sbjct: 87 KYKEKVQNKNKKETIKYPSALSEEVE-TAKRIVKYKKFDLRPMSPEEAVDQLELLDKDFF 145
Query: 313 AFRNEETGEINIVYKRKEGGYGLIIP 236
F N +G++N++YKRK+G +GLI P
Sbjct: 146 IFINSFSGDVNVIYKRKDGNFGLIEP 171
[164][TOP]
>UniRef100_A5N3B3 Predicted ribosome-associated protein n=2 Tax=Clostridium kluyveri
RepID=A5N3B3_CLOK5
Length = 175
Score = 63.2 bits (152), Expect = 1e-08
Identities = 26/68 (38%), Positives = 48/68 (70%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P E+E + ++V+TK F + P++ EA+ Q+ + H+F+ +R+ E G++N++YKR++G
Sbjct: 107 PDEKETDNQEHKIVKTKRFAVKPMSSEEAVLQMELLGHSFFVYRDAEQGDVNVIYKRRDG 166
Query: 256 GYGLIIPK 233
YGLI P+
Sbjct: 167 NYGLIEPE 174
[165][TOP]
>UniRef100_D0CH01 Sigma 54 modulation protein n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CH01_9SYNE
Length = 195
Score = 63.2 bits (152), Expect = 1e-08
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Frame = -2
Query: 448 DDISPLEEE----GEATLVEV-VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEI 284
+D SP+E EA L + VR KYF MPP+ + +A QL +DH FY FR +E+ ++
Sbjct: 118 NDASPVESSLLQGREAELPDPGVRRKYFAMPPMGLEDARRQLDLIDHDFYLFREKESDQL 177
Query: 283 NIVYKRKEGGYGLI 242
++Y+R GGYG+I
Sbjct: 178 QVIYRRNHGGYGVI 191
[166][TOP]
>UniRef100_C6QNN3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. Y4.1MC1 RepID=C6QNN3_9BACI
Length = 183
Score = 63.2 bits (152), Expect = 1e-08
Identities = 30/62 (48%), Positives = 40/62 (64%)
Frame = -2
Query: 427 EEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYG 248
E+ E E+VRTK+F + P+ EAI Q+ + H F+ F N ET NIVY+RK+G YG
Sbjct: 119 EDNEEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIVYRRKDGKYG 178
Query: 247 LI 242
LI
Sbjct: 179 LI 180
[167][TOP]
>UniRef100_C6PBD3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571
RepID=C6PBD3_CLOTS
Length = 179
Score = 63.2 bits (152), Expect = 1e-08
Identities = 30/61 (49%), Positives = 41/61 (67%)
Frame = -2
Query: 418 EATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLII 239
E T EVV+TK F + P++V EAI Q+ + H F+ F N +T + +VYKRK+G YGLI
Sbjct: 117 EETEFEVVKTKRFPVKPMSVQEAILQMNLLGHNFFVFTNSDTDDFTVVYKRKDGRYGLIE 176
Query: 238 P 236
P
Sbjct: 177 P 177
[168][TOP]
>UniRef100_C4FCG3 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis
DSM 13280 RepID=C4FCG3_9ACTN
Length = 194
Score = 63.2 bits (152), Expect = 1e-08
Identities = 37/93 (39%), Positives = 55/93 (59%)
Frame = -2
Query: 511 KGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVN 332
+G + A+V PVE P+ + D+ E+E + ++VR K ++ P+T EA+ Q
Sbjct: 104 QGLSAAEVA-PVE---PVADLADLLLPEDEDD----QLVRVKEVELTPMTDEEALVQTDL 155
Query: 331 VDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ H FY F N TG +N+VY RK GGYG+I PK
Sbjct: 156 IGHDFYVFENSVTGLVNVVYHRKNGGYGIIKPK 188
[169][TOP]
>UniRef100_C4EX83 SSU ribosomal protein S30P n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EX83_9BACT
Length = 180
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/79 (36%), Positives = 51/79 (64%)
Frame = -2
Query: 469 EVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETG 290
++ E + + EEE + V +V+ K F + +T EA Q+ + H+F+ FR+ +TG
Sbjct: 102 DISFELETEPFVAEEEKQEGGVNIVKVKRFPVRVMTPEEAALQMDLLGHSFFLFRDGDTG 161
Query: 289 EINIVYKRKEGGYGLIIPK 233
++N+VY+RKEGGYG++ P+
Sbjct: 162 DLNVVYRRKEGGYGVLKPE 180
[170][TOP]
>UniRef100_C2HJY8 Ribosome-associated inhibitor A n=1 Tax=Finegoldia magna ATCC 53516
RepID=C2HJY8_PEPMA
Length = 179
Score = 63.2 bits (152), Expect = 1e-08
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = -2
Query: 418 EATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLII 239
E + +V+TK F + P+ EAI Q+ +DH F+ F + +T +N+VYKRK+G YGL++
Sbjct: 115 EIPIGAIVKTKEFGIKPMDKEEAIMQMELIDHDFFVFLDSKTNNVNVVYKRKDGNYGLLV 174
Query: 238 P 236
P
Sbjct: 175 P 175
[171][TOP]
>UniRef100_C2D8Z3 Possible ribosome-associated inhibitor A n=1 Tax=Atopobium vaginae
DSM 15829 RepID=C2D8Z3_9ACTN
Length = 192
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/56 (51%), Positives = 36/56 (64%)
Frame = -2
Query: 400 VVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+VR KY D+ P+T EA+ Q + H FY F N TG IN+VY R GGYG+I PK
Sbjct: 130 LVREKYIDLHPMTEEEALVQTDLIGHDFYVFENATTGLINVVYHRHNGGYGIIKPK 185
[172][TOP]
>UniRef100_B9CNR8 Light-repressed protein n=1 Tax=Atopobium rimae ATCC 49626
RepID=B9CNR8_9ACTN
Length = 195
Score = 63.2 bits (152), Expect = 1e-08
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = -2
Query: 526 HGRHMKGFNRAKVREPVE--VEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSE 353
H ++ +G RA +E + +E P E+ DD ++VR KY D+ P+T E
Sbjct: 105 HAQNTRG--RALSQEELANLIETPAEDLDD-------------QLVREKYIDLLPMTEEE 149
Query: 352 AIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
A+ Q + H FY F N TG N++Y RK GGYG+I P+
Sbjct: 150 ALVQTDLLGHDFYVFVNSTTGLTNVIYHRKNGGYGIIKPR 189
[173][TOP]
>UniRef100_B5CNW3 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CNW3_9FIRM
Length = 186
Score = 63.2 bits (152), Expect = 1e-08
Identities = 30/75 (40%), Positives = 48/75 (64%)
Frame = -2
Query: 457 EEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINI 278
E +DD + +E +++VRTK F + P+ +A Q+ + H+F+ F N ET E+N+
Sbjct: 116 ETEDDAAEDDE------IQIVRTKKFGIKPMFPEDACIQMELLGHSFFVFSNAETDEVNV 169
Query: 277 VYKRKEGGYGLIIPK 233
VYKRK+G +GLI P+
Sbjct: 170 VYKRKDGSFGLIEPE 184
[174][TOP]
>UniRef100_C1EFG3 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFG3_9CHLO
Length = 284
Score = 63.2 bits (152), Expect = 1e-08
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETG-EINIVYKRKEGGYGLIIP 236
EVVR K+ + TV EA E++ N+ H F+AFRN G E+N+VYKR GGYG+I+P
Sbjct: 221 EVVREKFHPVRKCTVYEAAEEMENLGHTFFAFRNVAQGNEVNVVYKRDAGGYGVIVP 277
[175][TOP]
>UniRef100_Q9K6W6 Ribosomal protein S30AE family n=1 Tax=Bacillus halodurans
RepID=Q9K6W6_BACHD
Length = 187
Score = 62.8 bits (151), Expect = 2e-08
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = -2
Query: 469 EVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETG 290
E+ LEE+DD+ +VVR K F++ P+ EAI Q+ + H F+ F N +G
Sbjct: 121 EILLEEEDDL------------QVVRKKRFNLKPMDTEEAILQMDMLGHNFFVFSNAISG 168
Query: 289 EINIVYKRKEGGYGLIIPK 233
+ N+VY+RK+G YGLI P+
Sbjct: 169 DTNVVYRRKDGKYGLIEPE 187
[176][TOP]
>UniRef100_C5CEL9 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT
Length = 178
Score = 62.8 bits (151), Expect = 2e-08
Identities = 31/86 (36%), Positives = 50/86 (58%)
Frame = -2
Query: 499 RAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHA 320
RA++R + LE ++ EE G +++ RTK F + P+ + EA+ Q+ + H
Sbjct: 93 RARMRHRASAKEILEAIPEVPDEEERG----LQITRTKRFSIKPMKIDEALLQMEMLGHT 148
Query: 319 FYAFRNEETGEINIVYKRKEGGYGLI 242
F+ FRN +T E+N++Y RK G GLI
Sbjct: 149 FFVFRNVDTDEVNVLYLRKNGTVGLI 174
[177][TOP]
>UniRef100_A2C0K6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. NATL1A RepID=A2C0K6_PROM1
Length = 194
Score = 62.8 bits (151), Expect = 2e-08
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = -2
Query: 397 VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
VR KYF+M P+T+ +A QL +DH FY FR EE + ++Y+R GGYG+I K
Sbjct: 139 VRRKYFEMDPMTIEQARVQLDLIDHDFYLFREEEGSALRVIYRRNHGGYGVIQEK 193
[178][TOP]
>UniRef100_C9LS67 Ribosomal subunit interface protein n=1 Tax=Selenomonas sputigena
ATCC 35185 RepID=C9LS67_9FIRM
Length = 181
Score = 62.8 bits (151), Expect = 2e-08
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
EEEGE LV +TK F + P+ V EAI Q+ ++H F+ FRN E+ EIN+VY+R +G Y
Sbjct: 118 EEEGEFPLV---KTKRFVVKPMDVQEAIMQMNLLNHNFFVFRNAESEEINVVYRRTDGKY 174
Query: 250 GLIIP 236
LI P
Sbjct: 175 ALIEP 179
[179][TOP]
>UniRef100_C5EVT1 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EVT1_9FIRM
Length = 187
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = -2
Query: 460 LEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEIN 281
+EE+D++ E +++V+TK F + P EA Q+ + H+FY F N +T ++N
Sbjct: 118 IEEEDEVQDDE-------IQIVKTKKFAIKPTIPEEACLQMEMLGHSFYVFLNADTDQVN 170
Query: 280 IVYKRKEGGYGLIIPK 233
+VYKRK G YGLI P+
Sbjct: 171 VVYKRKNGTYGLIEPE 186
[180][TOP]
>UniRef100_C1XLG1 Sigma 54 modulation protein; SSU ribosomal protein S30P n=1
Tax=Meiothermus ruber DSM 1279 RepID=C1XLG1_MEIRU
Length = 183
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/65 (44%), Positives = 43/65 (66%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
EEE E +VRTK F M P+T +A ++ + H F+ FRN +T +IN++Y+R++G Y
Sbjct: 120 EEEAEP---RIVRTKRFHMKPMTPEDAAFEMEALGHDFFVFRNADTEQINVIYRRRDGNY 176
Query: 250 GLIIP 236
GLI P
Sbjct: 177 GLIEP 181
[181][TOP]
>UniRef100_B6FVY1 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6FVY1_9CLOT
Length = 194
Score = 62.8 bits (151), Expect = 2e-08
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = -2
Query: 451 DDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVY 272
++D+ E+E L + R K ++ P++ EA+ Q+ V H FY FRN+ET EI +VY
Sbjct: 124 EEDLEDFEDE----LFIIKRRKRINIKPMSEEEAVLQMELVGHDFYIFRNDETDEIALVY 179
Query: 271 KRKEGGYGLI 242
KRK GGYG+I
Sbjct: 180 KRKNGGYGII 189
[182][TOP]
>UniRef100_A7FQJ2 Ribosomal subunit interface protein n=7 Tax=Clostridium botulinum
RepID=A7FQJ2_CLOB1
Length = 175
Score = 62.8 bits (151), Expect = 2e-08
Identities = 27/68 (39%), Positives = 45/68 (66%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P E E ++V+TK F M P++ EA+ Q+ + H F+ ++N +T E+N++Y+RK+G
Sbjct: 107 PDYESEENKETQIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTEEVNVIYRRKDG 166
Query: 256 GYGLIIPK 233
YGLI P+
Sbjct: 167 NYGLIEPE 174
[183][TOP]
>UniRef100_Q0B0B5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen
RepID=Q0B0B5_SYNWW
Length = 181
Score = 62.4 bits (150), Expect = 2e-08
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
+VVR+K F + P+ V EAI Q+ + H+F+ F N ++ E+N+VYKRK+G YGLI P
Sbjct: 123 KVVRSKRFALKPMDVEEAIMQMNLLGHSFFVFFNPQSEEVNVVYKRKDGNYGLIEP 178
[184][TOP]
>UniRef100_Q05SE1 Putative uncharacterized protein n=1 Tax=Synechococcus sp. RS9916
RepID=Q05SE1_9SYNE
Length = 195
Score = 62.4 bits (150), Expect = 2e-08
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = -2
Query: 397 VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
VR KYF MPP++V EA QL +DH F+ FR+ + E+ ++Y+R GGYG+I
Sbjct: 140 VRRKYFPMPPMSVEEARHQLDLIDHDFFLFRDASSKELQVIYRRNHGGYGVI 191
[185][TOP]
>UniRef100_C8WT44 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446 RepID=C8WT44_ALIAC
Length = 180
Score = 62.4 bits (150), Expect = 2e-08
Identities = 32/96 (33%), Positives = 54/96 (56%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
R+ + NR ++ + D ++ ++E ++VVR K F + P+ V EA+ Q
Sbjct: 89 RYKEKLNRRFRARGPRPQLKAADRDAVAETDDE-----IKVVRVKRFPIKPMDVEEAVLQ 143
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N ET E+N+VY+R+ G YGLI P+
Sbjct: 144 MELLGHDFFVFMNAETEEVNVVYRRRSGDYGLIEPQ 179
[186][TOP]
>UniRef100_C5VNV1 Ribosomal subunit interface protein n=1 Tax=Clostridium botulinum D
str. 1873 RepID=C5VNV1_CLOBO
Length = 178
Score = 62.4 bits (150), Expect = 2e-08
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
++V+TK F + P++ EA+ Q+ + H F+ FRN +T E+N++YKRK+G YGLI P+
Sbjct: 121 KIVKTKKFAVKPMSNEEAVLQMELLGHNFFVFRNSDTDEVNVLYKRKDGQYGLIEPE 177
[187][TOP]
>UniRef100_C9RVC1 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Geobacillus RepID=C9RVC1_9BACI
Length = 182
Score = 62.4 bits (150), Expect = 2e-08
Identities = 36/85 (42%), Positives = 48/85 (56%)
Frame = -2
Query: 496 AKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAF 317
AK+ PV + E+ EEE E+VRTK+F + P+ EAI Q+ + H F
Sbjct: 106 AKLAAPVSIGASAAEN------EEE-----FEIVRTKHFSLKPMDSEEAILQMNLLGHNF 154
Query: 316 YAFRNEETGEINIVYKRKEGGYGLI 242
+ F N ET NIVY+RK+G YGLI
Sbjct: 155 FIFTNAETNRTNIVYRRKDGKYGLI 179
[188][TOP]
>UniRef100_B7DUH5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Alicyclobacillus acidocaldarius LAA1
RepID=B7DUH5_9BACL
Length = 180
Score = 62.4 bits (150), Expect = 2e-08
Identities = 32/96 (33%), Positives = 54/96 (56%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
R+ + NR ++ + D ++ ++E ++VVR K F + P+ V EA+ Q
Sbjct: 89 RYKEKLNRRFRARGPRPQLKAADRDAVAETDDE-----IKVVRVKRFPIKPMDVEEAVLQ 143
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N ET E+N+VY+R+ G YGLI P+
Sbjct: 144 MELLGHDFFVFMNAETEEVNVVYRRRSGDYGLIEPQ 179
[189][TOP]
>UniRef100_B0P2P9 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1
RepID=B0P2P9_9CLOT
Length = 179
Score = 62.4 bits (150), Expect = 2e-08
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = -2
Query: 460 LEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEIN 281
+E++DD+ E + ++R+K F + P+ V EA Q+ + H F+ FRN +T E+N
Sbjct: 110 MEQEDDVEDDE-------IRIIRSKKFAIKPMDVEEACVQMELLGHDFFVFRNADTFEVN 162
Query: 280 IVYKRKEGGYGLIIPK 233
+VYKRK YGLI P+
Sbjct: 163 VVYKRKGNTYGLIEPE 178
[190][TOP]
>UniRef100_Q67T85 30S ribosomal protein S30AE family n=1 Tax=Symbiobacterium
thermophilum RepID=Q67T85_SYMTH
Length = 178
Score = 62.0 bits (149), Expect = 3e-08
Identities = 25/57 (43%), Positives = 42/57 (73%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+VV+ K F + P+TV EAI Q+ + H F+ F N +TG++N++Y+R +G YGL++P+
Sbjct: 121 KVVKVKRFPVKPVTVDEAILQMDLLSHDFFVFVNSDTGKVNVLYRRHDGDYGLLVPE 177
[191][TOP]
>UniRef100_Q46H11 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Prochlorococcus marinus str. NATL2A
RepID=Q46H11_PROMT
Length = 194
Score = 62.0 bits (149), Expect = 3e-08
Identities = 27/55 (49%), Positives = 36/55 (65%)
Frame = -2
Query: 397 VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
VR KYF+M P+ + +A QL +DH FY FR EE + ++YKR GGYG+I K
Sbjct: 139 VRRKYFEMTPMNIEQARVQLDLIDHDFYLFREEEGSALRVIYKRNHGGYGVIQEK 193
[192][TOP]
>UniRef100_Q1IYK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Deinococcus geothermalis DSM 11300
RepID=Q1IYK5_DEIGD
Length = 186
Score = 62.0 bits (149), Expect = 3e-08
Identities = 26/56 (46%), Positives = 40/56 (71%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
E+VRTK FD+ P++ +A+ Q+ + H FY F+N +TG +VY+R++G YGLI P
Sbjct: 130 EIVRTKRFDLRPMSPEDAVTQMEALGHDFYVFKNMDTGGCAVVYRRRDGHYGLIEP 185
[193][TOP]
>UniRef100_B8I5T8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium cellulolyticum H10 RepID=B8I5T8_CLOCE
Length = 176
Score = 62.0 bits (149), Expect = 3e-08
Identities = 29/62 (46%), Positives = 43/62 (69%)
Frame = -2
Query: 418 EATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLII 239
E T +VVR+K F + P+ V EAI Q+ + H F+ F N ++ ++N+VYKRK+G YGLI
Sbjct: 114 EETEFKVVRSKRFAVKPMDVEEAILQMNLLGHEFFMFYNADSRQVNVVYKRKDGNYGLIE 173
Query: 238 PK 233
P+
Sbjct: 174 PE 175
[194][TOP]
>UniRef100_A0Q2Y0 Ribosomal subunit interface protein n=1 Tax=Clostridium novyi NT
RepID=A0Q2Y0_CLONN
Length = 178
Score = 62.0 bits (149), Expect = 3e-08
Identities = 30/78 (38%), Positives = 49/78 (62%)
Frame = -2
Query: 466 VPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGE 287
VP +++D+I ++V+TK F + P++ EA+ Q+ + H F+ F N ET E
Sbjct: 110 VPKDDEDNIES----------KIVKTKRFAIKPMSREEAVLQMELLGHNFFVFTNAETEE 159
Query: 286 INIVYKRKEGGYGLIIPK 233
+N++YKRK+G YGLI P+
Sbjct: 160 VNVLYKRKDGQYGLIEPE 177
[195][TOP]
>UniRef100_C9RBI8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Ammonifex degensii KC4 RepID=C9RBI8_9THEO
Length = 177
Score = 62.0 bits (149), Expect = 3e-08
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = -2
Query: 424 EGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGL 245
+GE VV+ K F P+++ EAI Q+ + H F+ F N ET ++N+VY+RK+G YGL
Sbjct: 113 KGEEEEFRVVKVKRFAWKPMSIKEAILQMNLLGHNFFVFTNAETEQVNVVYRRKDGNYGL 172
Query: 244 IIPK 233
I P+
Sbjct: 173 IEPE 176
[196][TOP]
>UniRef100_Q71WR7 Ribosomal subunit interface protein n=9 Tax=Listeria
RepID=Q71WR7_LISMF
Length = 187
Score = 62.0 bits (149), Expect = 3e-08
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P E EG+ L E+VRTK F + P+ EA+ Q+ + H+FY + + ET NIVY RK+G
Sbjct: 121 PEENEGDFDL-EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDG 179
Query: 256 GYGLI 242
YGLI
Sbjct: 180 KYGLI 184
[197][TOP]
>UniRef100_C5RGA6 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium cellulovorans 743B RepID=C5RGA6_CLOCL
Length = 180
Score = 62.0 bits (149), Expect = 3e-08
Identities = 28/71 (39%), Positives = 48/71 (67%)
Frame = -2
Query: 445 DISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKR 266
+++ E E E+ ++V+TK F + P+ EA+ Q+ + H F+ F ++ET E+N+VYKR
Sbjct: 111 ELAATEVEEES---KIVKTKRFAIKPMNAEEAVLQMELLGHNFFVFMDDETSEVNVVYKR 167
Query: 265 KEGGYGLIIPK 233
K+G +GLI P+
Sbjct: 168 KDGNFGLIEPE 178
[198][TOP]
>UniRef100_C4CGR1 SSU ribosomal protein S30P n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CGR1_9CHLR
Length = 194
Score = 62.0 bits (149), Expect = 3e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Frame = -2
Query: 466 VPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGE 287
+P+ D + EEE E +VR K F + P++ EAIEQ+ + H F+ F N + E
Sbjct: 115 LPVSTLDGLDVAEEEEETPSELLVRRKRFKIQPMSEEEAIEQMELLGHDFFVFFNPDLAE 174
Query: 286 INIVYKRKEGGYGLIIPK 233
IN++Y+R++G YG+I P+
Sbjct: 175 INVLYRRRDGLYGVIQPE 192
[199][TOP]
>UniRef100_C1XVX9 SSU ribosomal protein S30P; sigma 54 modulation protein n=1
Tax=Meiothermus silvanus DSM 9946 RepID=C1XVX9_9DEIN
Length = 184
Score = 62.0 bits (149), Expect = 3e-08
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = -2
Query: 505 FNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVD 326
F + PV +P + + EEG ++VRTK F M P++ +A ++ +
Sbjct: 101 FQEYRNHVPVMAGIPTPPESET----EEGP----QIVRTKRFAMKPMSPEDAAFEMEALG 152
Query: 325 HAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
H F+ FRN ET +IN++Y+R++G YGLI P
Sbjct: 153 HDFFVFRNAETEDINVIYRRRDGNYGLIEP 182
[200][TOP]
>UniRef100_A4ECY7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
ATCC 25986 RepID=A4ECY7_9ACTN
Length = 194
Score = 62.0 bits (149), Expect = 3e-08
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = -2
Query: 463 PLEEDDDISPL---EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEET 293
P+E +D++ L EE+ + +VR K D+ P+T +A+ Q + H FY F N T
Sbjct: 113 PVERVEDLADLLLPEEDDDL----LVREKVIDVTPMTEEQALVQTDLLGHDFYVFENATT 168
Query: 292 GEINIVYKRKEGGYGLIIPK 233
G IN+VY RK GGYG+I P+
Sbjct: 169 GLINVVYHRKNGGYGIIKPR 188
[201][TOP]
>UniRef100_Q97F93 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Clostridium
acetobutylicum RepID=Q97F93_CLOAB
Length = 174
Score = 61.6 bits (148), Expect = 3e-08
Identities = 25/57 (43%), Positives = 42/57 (73%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
E+V+TK F + P++ EA+ ++ + H F+ F+N ++ E+N+VYKRK+G YGLI P+
Sbjct: 117 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYGLIEPE 173
[202][TOP]
>UniRef100_A9W9Y4 Ribosomal subunit interface protein n=2 Tax=Chloroflexus
RepID=A9W9Y4_CHLAA
Length = 197
Score = 61.6 bits (148), Expect = 3e-08
Identities = 28/69 (40%), Positives = 48/69 (69%)
Frame = -2
Query: 439 SPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKE 260
+P E EA V+RTK F + P+ V +AIEQ+ + H F+ F++ ET +++++Y+R++
Sbjct: 130 TPTEVGSEA---RVIRTKTFRLRPMFVDDAIEQMELLGHNFFVFQDAETMQVSVLYRRRD 186
Query: 259 GGYGLIIPK 233
G YG+IIP+
Sbjct: 187 GNYGVIIPE 195
[203][TOP]
>UniRef100_A9BE19 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9211 RepID=A9BE19_PROM4
Length = 197
Score = 61.6 bits (148), Expect = 3e-08
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = -2
Query: 397 VRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+R KYF MPP++ +A QL +DH FY F+ ET ++ ++Y+R GGYG+I K
Sbjct: 140 IRRKYFSMPPMSTEQARHQLDLIDHDFYMFKEIETQQLQVIYRRTHGGYGIIQAK 194
[204][TOP]
>UniRef100_C4V4X1 Ribosome-associated inhibitor A n=1 Tax=Selenomonas flueggei ATCC
43531 RepID=C4V4X1_9FIRM
Length = 181
Score = 61.6 bits (148), Expect = 3e-08
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = -2
Query: 436 PLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEG 257
P+ EE E L VV+TK F + P+ V EAI Q+ ++H F+ FRN E+ E+NIVY R +G
Sbjct: 114 PIPEEDE--LYPVVKTKRFTLQPMDVQEAIMQMNLLNHHFFVFRNAESEEVNIVYGRHDG 171
Query: 256 GYGLI 242
Y LI
Sbjct: 172 KYALI 176
[205][TOP]
>UniRef100_C2LVK8 Ribosomal subunit interface protein n=1 Tax=Staphylococcus hominis
SK119 RepID=C2LVK8_STAHO
Length = 191
Score = 61.6 bits (148), Expect = 3e-08
Identities = 29/81 (35%), Positives = 45/81 (55%)
Frame = -2
Query: 484 EPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFR 305
EP E ++D+ E +E++R+K F + P+ EA+ Q+ + H FY F
Sbjct: 107 EPFIAEQQTVVNEDVEATSESSNENEIEIIRSKQFSLKPMDSEEAVLQMDLLGHDFYIFT 166
Query: 304 NEETGEINIVYKRKEGGYGLI 242
+ ET +IVY+RK+G YGLI
Sbjct: 167 DRETDGTSIVYRRKDGKYGLI 187
[206][TOP]
>UniRef100_C2AF84 SSU ribosomal protein S30P; sigma 54 modulation protein n=1
Tax=Thermomonospora curvata DSM 43183 RepID=C2AF84_THECU
Length = 221
Score = 61.6 bits (148), Expect = 3e-08
Identities = 30/85 (35%), Positives = 49/85 (57%)
Frame = -2
Query: 496 AKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAF 317
A EP P EE ++ P+ +G+ LV VR K+ P+T+ +A+ ++ V H F
Sbjct: 134 APAAEPAAATEPAEEGGNVVPIAMDGDGPLV--VREKFHRSAPMTIDQALYEMELVGHDF 191
Query: 316 YAFRNEETGEINIVYKRKEGGYGLI 242
+ FR++E G ++VY+RK YG+I
Sbjct: 192 FLFRDKENGHPSVVYRRKGWNYGVI 216
[207][TOP]
>UniRef100_A8S366 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8S366_9CLOT
Length = 187
Score = 61.6 bits (148), Expect = 3e-08
Identities = 30/76 (39%), Positives = 46/76 (60%)
Frame = -2
Query: 460 LEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEIN 281
+EE+D++ E +++V+TK F + P EA Q+ + H FY F N +T ++N
Sbjct: 118 IEEEDEVQDDE-------IQIVKTKKFAIKPTIPEEACLQMEMLGHNFYVFLNADTDQVN 170
Query: 280 IVYKRKEGGYGLIIPK 233
+VYKRK G YGLI P+
Sbjct: 171 VVYKRKNGTYGLIEPE 186
[208][TOP]
>UniRef100_Q5M196 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=2 Tax=Streptococcus thermophilus RepID=Q5M196_STRT1
Length = 182
Score = 61.2 bits (147), Expect = 4e-08
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDDDISPLEEE-GEATLVEVVRTKYFDMPPLTVSEAIEQLVNVD 326
N+ K+ +VP E +EE EA VEVVRTK ++ P+ V EAI Q+ +
Sbjct: 92 NKTKIARKYREKVPTGEMFSTEFNKEEVEEAPAVEVVRTKNIELKPMDVEEAILQMELLG 151
Query: 325 HAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
H F+ + + E N++YKR++G YGLI K
Sbjct: 152 HDFFIYTDSEDHTTNVLYKREDGNYGLIEAK 182
[209][TOP]
>UniRef100_C4FR72 Putative uncharacterized protein n=1 Tax=Veillonella dispar ATCC
17748 RepID=C4FR72_9FIRM
Length = 175
Score = 61.2 bits (147), Expect = 4e-08
Identities = 31/69 (44%), Positives = 46/69 (66%)
Frame = -2
Query: 439 SPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKE 260
+P+EEE +EVV+ K+F + P+ V EAI Q+ + H F+ F N ET +N+VY+R +
Sbjct: 109 APVEEE----TIEVVKRKHFAVRPMDVEEAILQMNLIGHDFFMFFNAETEAMNVVYRRHD 164
Query: 259 GGYGLIIPK 233
G YGLI P+
Sbjct: 165 GFYGLIEPE 173
[210][TOP]
>UniRef100_Q4L4H7 Uncharacterized protein SH2139 n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Y2139_STAHJ
Length = 192
Score = 61.2 bits (147), Expect = 4e-08
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = -2
Query: 469 EVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETG 290
E P E DD++ E + +E++R+K F + P+ EA+ Q+ + H FY F + ET
Sbjct: 115 EAPPENVDDVNA--EPTNDSEIEIIRSKQFSLKPMDSEEAVLQMELLGHDFYIFTDRETD 172
Query: 289 EINIVYKRKEGGYGLI 242
+IVYKRK+G YGLI
Sbjct: 173 GTSIVYKRKDGKYGLI 188
[211][TOP]
>UniRef100_Q5KV92 Ribosomal protein S30EA n=1 Tax=Geobacillus kaustophilus
RepID=Q5KV92_GEOKA
Length = 183
Score = 60.8 bits (146), Expect = 6e-08
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
E+VRTK+F + P+ EAI Q+ + H F+ F N ET NIVY+RK+G YGLI
Sbjct: 127 EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIVYRRKDGKYGLI 180
[212][TOP]
>UniRef100_C4Z2Z4 Putative sigma-54 modulation protein n=1 Tax=Eubacterium eligens
ATCC 27750 RepID=C4Z2Z4_EUBE2
Length = 175
Score = 60.8 bits (146), Expect = 6e-08
Identities = 29/67 (43%), Positives = 43/67 (64%)
Frame = -2
Query: 433 LEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGG 254
+E++ + V+++RTK F + P+ EA Q+ + H FY F N ET E+N+VYKRK
Sbjct: 107 VEKDYDDDEVKIIRTKRFGIKPMDPEEACVQMELLGHNFYVFFNSETEEVNVVYKRKGNT 166
Query: 253 YGLIIPK 233
YGLI P+
Sbjct: 167 YGLIEPE 173
[213][TOP]
>UniRef100_B1I6C1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Candidatus Desulforudis audaxviator MP104C
RepID=B1I6C1_DESAP
Length = 174
Score = 60.8 bits (146), Expect = 6e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = -2
Query: 400 VVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
+VRTK F + P+ V EA+ Q+ + H+F+ F N E ++N++Y+RK+G YGLI P
Sbjct: 117 IVRTKRFALKPMPVDEAVMQMNLLGHSFFVFANAENQQVNVIYRRKDGHYGLIEP 171
[214][TOP]
>UniRef100_B0S0M8 30S ribosomal protein S30AE family n=1 Tax=Finegoldia magna ATCC
29328 RepID=B0S0M8_FINM2
Length = 179
Score = 60.8 bits (146), Expect = 6e-08
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = -2
Query: 400 VVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
+V+TK F + P+ EAI Q+ +DH F+ F + +T +N+VYKR +G YGL++P
Sbjct: 121 IVKTKEFGIKPMDKEEAIMQMELIDHDFFVFLDSKTNNVNVVYKRNDGNYGLLVP 175
[215][TOP]
>UniRef100_A4ISU0 Ribosomal subunit interface protein n=1 Tax=Geobacillus
thermodenitrificans NG80-2 RepID=A4ISU0_GEOTN
Length = 182
Score = 60.8 bits (146), Expect = 6e-08
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
E+VRTK+F + P+ EAI Q+ + H F+ F N ET NIVY+RK+G YGLI
Sbjct: 126 EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIVYRRKDGRYGLI 179
[216][TOP]
>UniRef100_C8VY36 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Desulfotomaculum acetoxidans DSM 771
RepID=C8VY36_9FIRM
Length = 177
Score = 60.8 bits (146), Expect = 6e-08
Identities = 25/57 (43%), Positives = 41/57 (71%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+++R K F+M P++V EA+ Q+ + H+F+ F N ++ N+VYKRK+G YGLI P+
Sbjct: 120 KILRNKRFNMKPMSVEEAVLQMNLLGHSFFVFSNADSDRANVVYKRKDGNYGLIEPE 176
[217][TOP]
>UniRef100_C2AWR2 Sigma 54 modulation protein; SSU ribosomal protein S30P n=1
Tax=Veillonella parvula DSM 2008 RepID=C2AWR2_9FIRM
Length = 175
Score = 60.8 bits (146), Expect = 6e-08
Identities = 31/69 (44%), Positives = 46/69 (66%)
Frame = -2
Query: 439 SPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKE 260
+P+EEE +EVV+ K+F + P+ V EAI Q+ + H F+ F N ET +N+VY+R +
Sbjct: 109 APVEEE----TIEVVKRKHFVVRPMDVEEAILQMNLIGHDFFMFFNAETEAMNVVYRRHD 164
Query: 259 GGYGLIIPK 233
G YGLI P+
Sbjct: 165 GFYGLIEPE 173
[218][TOP]
>UniRef100_C0FTS3 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans
DSM 16841 RepID=C0FTS3_9FIRM
Length = 176
Score = 60.8 bits (146), Expect = 6e-08
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEED--DDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAI 347
R +K + V + ++D D+ S +EE ++++RTK FDM P+ +A
Sbjct: 83 RQLKKYRTKLVTKQQNAAAVFKQDFLDEKSEDDEE-----IKIIRTKKFDMKPMYPEDAC 137
Query: 346 EQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
++ + H FY F N ET ++N+VYKRK YGLI P+
Sbjct: 138 VEMELLGHDFYVFINAETEDVNVVYKRKGNTYGLIEPE 175
[219][TOP]
>UniRef100_C0CVD1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
DSM 15981 RepID=C0CVD1_9CLOT
Length = 176
Score = 60.8 bits (146), Expect = 6e-08
Identities = 28/66 (42%), Positives = 41/66 (62%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
EE+ + + +V+TK F + P EA Q+ + H FY F N +T ++N+VYKRK G Y
Sbjct: 110 EEDEQEDDIRIVKTKKFAIKPTIPEEACLQMEMLGHNFYVFLNSDTDQVNVVYKRKNGTY 169
Query: 250 GLIIPK 233
GLI P+
Sbjct: 170 GLIEPE 175
[220][TOP]
>UniRef100_B4BN91 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. G11MC16 RepID=B4BN91_9BACI
Length = 182
Score = 60.8 bits (146), Expect = 6e-08
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
E+VRTK+F + P+ EAI Q+ + H F+ F N ET NIVY+RK+G YGLI
Sbjct: 126 EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIVYRRKDGRYGLI 179
[221][TOP]
>UniRef100_B0PAJ5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
DSM 17241 RepID=B0PAJ5_9FIRM
Length = 178
Score = 60.8 bits (146), Expect = 6e-08
Identities = 27/56 (48%), Positives = 38/56 (67%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
+V R K F + P+ + EAI Q+ V+H F+ F N E+ EIN+VYKR+ G YGL+ P
Sbjct: 120 DVKRVKRFTLRPMDIDEAILQMNLVEHEFFVFLNAESNEINVVYKRRNGAYGLLEP 175
[222][TOP]
>UniRef100_A8SKZ7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC
33270 RepID=A8SKZ7_9FIRM
Length = 174
Score = 60.8 bits (146), Expect = 6e-08
Identities = 31/88 (35%), Positives = 53/88 (60%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDH 323
N+ K+++ + + + PLEEE ++VR K FD+ ++ EAI Q+ ++H
Sbjct: 89 NKTKLQKKYQALETIRFEKIAEPLEEEES----KIVRVKKFDVATMSEEEAILQIELLNH 144
Query: 322 AFYAFRNEETGEINIVYKRKEGGYGLII 239
F+ F+N + + N++YKRK+G YGLII
Sbjct: 145 DFFIFKNAKDYKTNVLYKRKDGNYGLII 172
[223][TOP]
>UniRef100_B7GE66 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7GE66_PHATR
Length = 209
Score = 60.8 bits (146), Expect = 6e-08
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = -2
Query: 526 HGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMP-PLTVSEA 350
HG G + +V E +E + E EE + + + K FD+ P++V EA
Sbjct: 115 HGGEKMGNDIMEVLENLE---DVSEYTATPVAEEYVDPEAPTITKVKNFDLTKPMSVQEA 171
Query: 349 IEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
+ L +DH FY FRN ET EI++VYKR GG GL+ P
Sbjct: 172 VFALDYIDHDFYVFRNAETNEISVVYKRHVGGIGLVEP 209
[224][TOP]
>UniRef100_P28368 Uncharacterized protein yvyD n=1 Tax=Bacillus subtilis
RepID=YVYD_BACSU
Length = 189
Score = 60.8 bits (146), Expect = 6e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = -2
Query: 460 LEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEIN 281
L D DI+ ++ E +++VR K F++ P+ EAI Q+ + H F+ F N ET N
Sbjct: 113 LGSDTDIAVQDDIEEEESLDIVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNAETNLTN 172
Query: 280 IVYKRKEGGYGLIIP 236
+VY+R +G YGLI P
Sbjct: 173 VVYRRNDGKYGLIEP 187
[225][TOP]
>UniRef100_C1TPS4 SSU ribosomal protein S30P n=1 Tax=Dethiosulfovibrio peptidovorans
DSM 11002 RepID=C1TPS4_9BACT
Length = 182
Score = 60.5 bits (145), Expect = 8e-08
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = -2
Query: 433 LEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGG 254
+EE+ E ++V+ K F + P++ EA Q+ + H+F+ F N E+G +N+VYKRK GG
Sbjct: 119 VEEKDE----KIVKVKKFPLRPMSAEEACMQMDLLGHSFFIFSNVESGSMNVVYKRKSGG 174
Query: 253 YGLIIP 236
YGL+ P
Sbjct: 175 YGLLEP 180
[226][TOP]
>UniRef100_B0MGZ9 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
14662 RepID=B0MGZ9_9FIRM
Length = 176
Score = 60.5 bits (145), Expect = 8e-08
Identities = 30/76 (39%), Positives = 49/76 (64%)
Frame = -2
Query: 460 LEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEIN 281
+++D+D+ E+E + ++R+K F + P+ V EA Q+ + H F+ FRN +T E+N
Sbjct: 107 IDKDEDVD--EDE-----IRIIRSKKFAIKPMDVEEACIQMDLLGHNFFVFRNADTFEVN 159
Query: 280 IVYKRKEGGYGLIIPK 233
+VYKRK YGLI P+
Sbjct: 160 VVYKRKGNTYGLIEPE 175
[227][TOP]
>UniRef100_A7VDW4 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50
RepID=A7VDW4_9CLOT
Length = 170
Score = 60.5 bits (145), Expect = 8e-08
Identities = 30/66 (45%), Positives = 41/66 (62%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
EE E +++VR K F + P+ +A Q+ + H FY FRN ET E+N+VYKRK Y
Sbjct: 104 EETDEDDEIKIVRCKKFAVKPMYPEDACIQMDLLGHNFYVFRNAETEEVNVVYKRKGNTY 163
Query: 250 GLIIPK 233
GLI P+
Sbjct: 164 GLIEPE 169
[228][TOP]
>UniRef100_A6BHR0 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM
13814 RepID=A6BHR0_9FIRM
Length = 178
Score = 60.5 bits (145), Expect = 8e-08
Identities = 33/90 (36%), Positives = 50/90 (55%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDH 323
N+ RE E D +E++GE +++VRTK F P+ +A Q+ + H
Sbjct: 90 NKLVAREQEGGNFKQEFFDAEDNIEDDGE---IKIVRTKKFGFKPMYPEDACVQMELLGH 146
Query: 322 AFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
FY F N E+ E+N+VY+RK G +GLI P+
Sbjct: 147 DFYVFCNAESDEVNVVYRRKNGTFGLIEPE 176
[229][TOP]
>UniRef100_Q3AFQ6 Ribosomal subunit interface protein n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AFQ6_CARHZ
Length = 177
Score = 60.1 bits (144), Expect = 1e-07
Identities = 25/58 (43%), Positives = 42/58 (72%)
Frame = -2
Query: 406 VEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+++V++K F + P++ EA Q+ + H+F+ F N +T EIN+VYKR++G YGLI P+
Sbjct: 119 IKIVKSKRFAIKPMSPEEAAMQMELLGHSFFVFTNADTDEINVVYKRRDGKYGLIEPE 176
[230][TOP]
>UniRef100_B9MLV8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Anaerocellum thermophilum DSM 6725
RepID=B9MLV8_ANATD
Length = 181
Score = 60.1 bits (144), Expect = 1e-07
Identities = 26/66 (39%), Positives = 44/66 (66%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
E + E + + +TK F + P++V EAI Q+ + H F+ F N++T ++N+VY+R +G Y
Sbjct: 115 EVQEENSEFRIAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDTDKVNVVYRRNDGAY 174
Query: 250 GLIIPK 233
GLI P+
Sbjct: 175 GLIEPE 180
[231][TOP]
>UniRef100_B8E0U8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0U8_DICTD
Length = 179
Score = 60.1 bits (144), Expect = 1e-07
Identities = 30/65 (46%), Positives = 43/65 (66%)
Frame = -2
Query: 433 LEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGG 254
L EE + EVV+ K F + P+ + EAI Q+ + H F+ FR+ ET +I +VYKRK+G
Sbjct: 111 LIEETKEEKPEVVKVKRFLLKPMDLEEAILQMELLGHDFFIFRDAETDKIEVVYKRKDGK 170
Query: 253 YGLII 239
YGLI+
Sbjct: 171 YGLIV 175
[232][TOP]
>UniRef100_A9AY42 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Herpetosiphon aurantiacus ATCC 23779
RepID=A9AY42_HERA2
Length = 186
Score = 60.1 bits (144), Expect = 1e-07
Identities = 26/66 (39%), Positives = 44/66 (66%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
E+ +A +++R K + P+ EAIEQ+ + H+F+ FR+ ET +I +VY+R +G Y
Sbjct: 121 EDAEQAEERQIIRAKEVTLRPMFSDEAIEQMELLGHSFFVFRDAETEKIQVVYRRNDGNY 180
Query: 250 GLIIPK 233
GLI+P+
Sbjct: 181 GLIMPR 186
[233][TOP]
>UniRef100_A0ALJ5 YfiA protein n=2 Tax=Listeria RepID=A0ALJ5_LISW6
Length = 187
Score = 60.1 bits (144), Expect = 1e-07
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = -2
Query: 439 SPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKE 260
+P EE +E+VRTK F + P+ EA+ Q+ + H+FY + + ET NIVY RK+
Sbjct: 119 TPPEENESDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKD 178
Query: 259 GGYGLI 242
G YGLI
Sbjct: 179 GKYGLI 184
[234][TOP]
>UniRef100_C9KNJ3 Ribosomal subunit interface protein n=1 Tax=Mitsuokella multacida
DSM 20544 RepID=C9KNJ3_9FIRM
Length = 181
Score = 60.1 bits (144), Expect = 1e-07
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = -2
Query: 439 SPLEE-EGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRK 263
SP+ + E+ +VV+TK+F + P+ V EAI ++ ++H F+ FR+ ET +N+VY+R
Sbjct: 111 SPMPDVHDESDTYKVVKTKHFIVKPMDVQEAIMEMNLLNHNFFVFRDAETEAVNVVYRRD 170
Query: 262 EGGYGLI 242
+G YGLI
Sbjct: 171 DGNYGLI 177
[235][TOP]
>UniRef100_B0G387 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G387_9FIRM
Length = 177
Score = 60.1 bits (144), Expect = 1e-07
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
EE E V++VRTK F + P+ +A Q+ + H F+ F N E E+N+VYKRK+G +
Sbjct: 110 EESIEDDEVKIVRTKRFGIKPMYPEDACVQMELLGHNFFVFFNAENEEVNVVYKRKDGSF 169
Query: 250 GLIIPK 233
GLI P+
Sbjct: 170 GLIEPE 175
[236][TOP]
>UniRef100_D0BMS6 Ribosomal subunit interface protein n=1 Tax=Granulicatella elegans
ATCC 700633 RepID=D0BMS6_9LACT
Length = 182
Score = 59.7 bits (143), Expect = 1e-07
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = -2
Query: 481 PVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRN 302
PV VP D+D S LE +VRTK D+ P+ EA+ Q+ + H F+ +++
Sbjct: 108 PVAPVVPEPVDEDESVLE---------IVRTKRVDLKPMDSEEAVLQMNMLGHNFFIYQD 158
Query: 301 EETGEINIVYKRKEGGYGLI 242
ET E +IVY+RK+G YGLI
Sbjct: 159 AETNETHIVYRRKDGKYGLI 178
[237][TOP]
>UniRef100_C6LIX7 Ribosomal subunit interface protein n=1 Tax=Bryantella
formatexigens DSM 14469 RepID=C6LIX7_9FIRM
Length = 176
Score = 59.7 bits (143), Expect = 1e-07
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
EE E V ++RTK+F + P+ +A Q+ + H F+ F N ET E+N+VYKRK Y
Sbjct: 110 EETVEPEEVNIIRTKHFGIKPMYPEDACIQMELLGHNFFVFCNAETEEVNVVYKRKGNTY 169
Query: 250 GLIIPK 233
GLI P+
Sbjct: 170 GLIEPE 175
[238][TOP]
>UniRef100_C2LQ50 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=1 Tax=Streptococcus salivarius SK126
RepID=C2LQ50_STRSL
Length = 182
Score = 59.7 bits (143), Expect = 1e-07
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Frame = -2
Query: 502 NRAKVREPVEVEVPLEE--DDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNV 329
N+ K+ +VP E D + E+ EA VEVVRTK ++ P+ V EAI Q+ +
Sbjct: 92 NKTKIARKHREKVPTGEVFSADFNN-EQVEEAPAVEVVRTKNIELKPMDVEEAILQMELL 150
Query: 328 DHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
H F+ + + E N++YKR++G YGLI K
Sbjct: 151 GHDFFIYTDSEDHTTNVLYKREDGNYGLIEAK 182
[239][TOP]
>UniRef100_C0WCZ2 Sigma-54 modulation protein n=1 Tax=Acidaminococcus sp. D21
RepID=C0WCZ2_9FIRM
Length = 180
Score = 59.7 bits (143), Expect = 1e-07
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = -2
Query: 445 DISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKR 266
D+ +GE +V RTK + M P+ V EAI Q+ ++H F+ F N+ET + +VY+R
Sbjct: 111 DVEEASADGE---FKVARTKTYAMRPMNVQEAIMQMNMLNHDFFVFFNDETESMAVVYRR 167
Query: 265 KEGGYGLIIPK 233
K G YGLI P+
Sbjct: 168 KAGDYGLINPE 178
[240][TOP]
>UniRef100_C0BYR7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
15053 RepID=C0BYR7_9CLOT
Length = 178
Score = 59.7 bits (143), Expect = 1e-07
Identities = 35/96 (36%), Positives = 53/96 (55%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQ 341
RH +G N + E E E E+DD+ V++VRTK F + P+ +A Q
Sbjct: 95 RHQEGGNFRQ--EFFESEYATEDDDE------------VKIVRTKRFGIKPMYPEDACIQ 140
Query: 340 LVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+ + H F+ F N +T E+N+VY+RK G +GLI P+
Sbjct: 141 MDLLGHDFFVFCNADTDEVNVVYRRKNGTFGLIEPE 176
[241][TOP]
>UniRef100_B1B8N8 Ribosomal subunit interface protein n=1 Tax=Clostridium botulinum C
str. Eklund RepID=B1B8N8_CLOBO
Length = 184
Score = 59.7 bits (143), Expect = 1e-07
Identities = 29/78 (37%), Positives = 47/78 (60%)
Frame = -2
Query: 466 VPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGE 287
VP + +D I ++V+TK F + P++ EA+ Q+ + H F+ F N +T E
Sbjct: 116 VPKDNEDSIES----------KIVKTKRFAIKPMSKEEAVLQMELLGHNFFVFTNGDTEE 165
Query: 286 INIVYKRKEGGYGLIIPK 233
+N++YKRK+G YGLI P+
Sbjct: 166 VNVLYKRKDGQYGLIEPE 183
[242][TOP]
>UniRef100_C4ZI34 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Eubacterium rectale
ATCC 33656 RepID=C4ZI34_EUBR3
Length = 175
Score = 59.3 bits (142), Expect = 2e-07
Identities = 31/74 (41%), Positives = 44/74 (59%)
Frame = -2
Query: 454 EDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIV 275
+DD + + E E +++VRTK F M P+ +A Q+ H F+ FRN E E+N+V
Sbjct: 103 QDDFVEADDAEDEE--IKIVRTKRFGMKPMYPEDACIQMELSGHDFFVFRNAENDEVNVV 160
Query: 274 YKRKEGGYGLIIPK 233
YKRK YGLI P+
Sbjct: 161 YKRKGHTYGLIEPE 174
[243][TOP]
>UniRef100_Q1K310 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Desulfuromonas acetoxidans DSM 684
RepID=Q1K310_DESAC
Length = 182
Score = 59.3 bits (142), Expect = 2e-07
Identities = 23/57 (40%), Positives = 41/57 (71%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPK 233
+V+R+ F + P++V EA+ Q+ + F F +++T E+N++Y+RK+G YGLI+PK
Sbjct: 125 KVIRSHSFSIKPMSVDEAVMQMDLLQKEFLVFTDDDTEEVNVIYRRKDGNYGLIVPK 181
[244][TOP]
>UniRef100_C5QQC2 Ribosome-associated inhibitor protein Y n=1 Tax=Staphylococcus
epidermidis M23864:W1 RepID=C5QQC2_STAEP
Length = 191
Score = 59.3 bits (142), Expect = 2e-07
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = -2
Query: 487 REPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAF 308
+E EV +++S EE + +E++R+K F + P+ EA+ Q+ + H F+ F
Sbjct: 106 QEVFVAEVQEATPEEVSGAEEPDNDSDIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIF 165
Query: 307 RNEETGEINIVYKRKEGGYGLI 242
+ ET +IVY+RK+G YGLI
Sbjct: 166 TDRETDGTSIVYRRKDGKYGLI 187
[245][TOP]
>UniRef100_A8FHW6 Ribosome-associated inhibitor A n=2 Tax=Bacillus pumilus
RepID=A8FHW6_BACP2
Length = 187
Score = 59.3 bits (142), Expect = 2e-07
Identities = 27/66 (40%), Positives = 42/66 (63%)
Frame = -2
Query: 433 LEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGG 254
++++ E E+VR K F++ P+ EAI Q+ + H+F+ F N ET N+VY+R +G
Sbjct: 120 VQDDEEIDETEIVRQKRFNLKPMDSEEAILQMNMLGHSFFVFTNAETNLTNVVYRRNDGK 179
Query: 253 YGLIIP 236
YGLI P
Sbjct: 180 YGLIEP 185
[246][TOP]
>UniRef100_B0NJJ3 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC
35704 RepID=B0NJJ3_EUBSP
Length = 179
Score = 59.3 bits (142), Expect = 2e-07
Identities = 28/66 (42%), Positives = 43/66 (65%)
Frame = -2
Query: 430 EEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGY 251
E++GE +++VRTK F P+ +A Q+ + H F+ F N ET E+N+VY+RK G +
Sbjct: 115 EDDGE---IKIVRTKKFGFKPMYPEDACVQMELLGHDFFVFCNAETDEVNVVYRRKNGTF 171
Query: 250 GLIIPK 233
GLI P+
Sbjct: 172 GLIEPE 177
[247][TOP]
>UniRef100_A6CQE4 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. SG-1
RepID=A6CQE4_9BACI
Length = 189
Score = 59.3 bits (142), Expect = 2e-07
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = -2
Query: 403 EVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
EVVRTK F++ P+ EAI Q+ + H+F+ F + ET NIVYKR++G YGLI
Sbjct: 133 EVVRTKQFNLKPMDSEEAILQMNLLGHSFFIFTDAETNATNIVYKRRDGKYGLI 186
[248][TOP]
>UniRef100_Q03GZ9 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Pediococcus pentosaceus ATCC 25745
RepID=Q03GZ9_PEDPA
Length = 184
Score = 58.9 bits (141), Expect = 2e-07
Identities = 31/77 (40%), Positives = 49/77 (63%)
Frame = -2
Query: 472 VEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEET 293
VE+P DI +E E EA+ ++VRTK + P+ EAI Q+ + H F+ + + E+
Sbjct: 108 VEIP---SGDI--VENEEEASQFDIVRTKQVSLKPMGSEEAILQMDMLGHNFFIYEDAES 162
Query: 292 GEINIVYKRKEGGYGLI 242
G ++IVY+R++G YGLI
Sbjct: 163 GSVDIVYRRRDGRYGLI 179
[249][TOP]
>UniRef100_B1HN67 Hypothetical yvyD protein n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HN67_LYSSC
Length = 183
Score = 58.9 bits (141), Expect = 2e-07
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = -2
Query: 400 VVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLI 242
+VRTK FD+ P+ EA+ Q+ + H FY F + E+ NIVYKRK+G YGLI
Sbjct: 128 IVRTKQFDLKPMDQEEAVLQMNMLGHDFYVFTDAESNGTNIVYKRKDGKYGLI 180
[250][TOP]
>UniRef100_Q62PU3 YvyD n=2 Tax=Bacillus licheniformis ATCC 14580 RepID=Q62PU3_BACLD
Length = 187
Score = 58.9 bits (141), Expect = 2e-07
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = -2
Query: 520 RHMKGFNRAKVREPVEVEVPLEEDDDI-SPLEEEGEATLVEVVRTKYFDMPPLTVSEAIE 344
+H NR K RE + E + I + ++E+ E +VVR K F++ P+ EAI
Sbjct: 91 KHKTKVNR-KFREKGSSKHVFAEGNGIGTAVQEDIEDEQPQVVRQKRFNLKPMDNEEAIL 149
Query: 343 QLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIP 236
Q+ + H+F+ F N ET N+VY+R +G YGLI P
Sbjct: 150 QMNMLGHSFFVFTNAETNLTNVVYRRNDGKYGLIEP 185