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[1][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 217 bits (552), Expect = 4e-55
Identities = 107/128 (83%), Positives = 121/128 (94%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
ATGLSMKRL+AVLLTPKAPRSL+QKIGINQNLKPSEVIADP+AETAEE LI QFM++DLE
Sbjct: 451 ATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLE 510
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
KVL+SLNPREKQVIRWR+G++DGR K QEIGE++GVSRERIR IESCAFRKLKN++R +
Sbjct: 511 KVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTK 570
Query: 92 HLQQYLVS 69
HLQQYLVS
Sbjct: 571 HLQQYLVS 578
[2][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 217 bits (552), Expect = 4e-55
Identities = 107/128 (83%), Positives = 121/128 (94%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
ATGLSMKRL+AVLLTPKAPRSL+QKIGINQNLKPSEVIADP+AETAEE LI QFM++DLE
Sbjct: 108 ATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLE 167
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
KVL+SLNPREKQVIRWR+G++DGR K QEIGE++GVSRERIR IESCAFRKLKN++R +
Sbjct: 168 KVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTK 227
Query: 92 HLQQYLVS 69
HLQQYLVS
Sbjct: 228 HLQQYLVS 235
[3][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 208 bits (530), Expect = 1e-52
Identities = 104/130 (80%), Positives = 118/130 (90%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
ATGLSMKRL AVLL+PK PRSL+QKIG+NQNLKPSEVIADPEA T+E+ LI +FM++DL+
Sbjct: 443 ATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLD 502
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
KVLDSL REKQVIRWRFGM+DGRMK QEIGEM+GVSRER+R IES AFRKLKN+KRN
Sbjct: 503 KVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNN 562
Query: 92 HLQQYLVSQS 63
HLQQYLV+QS
Sbjct: 563 HLQQYLVAQS 572
[4][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 207 bits (528), Expect = 2e-52
Identities = 104/130 (80%), Positives = 117/130 (90%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
ATGLSMKRL AVLL+PK PRSL+QKIG+NQNLKPSEVIADPEA T E+ LI +FM++DL+
Sbjct: 443 ATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLD 502
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
KVLDSL REKQVIRWRFGM+DGRMK QEIGEM+GVSRER+R IES AFRKLKN+KRN
Sbjct: 503 KVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNN 562
Query: 92 HLQQYLVSQS 63
HLQQYLV+QS
Sbjct: 563 HLQQYLVAQS 572
[5][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 207 bits (526), Expect = 4e-52
Identities = 103/130 (79%), Positives = 118/130 (90%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
ATGLSMKRL AVLL+PK PRSL++KIG+NQNLKPSEVIADPEA T+E+ LI +FM++DL+
Sbjct: 445 ATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLD 504
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
KVLDSL REKQVIRWRFGM+DGRMK QEIGEM+GVSRER+R IES AFRKLKN+KRN
Sbjct: 505 KVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNN 564
Query: 92 HLQQYLVSQS 63
HLQQYLV+QS
Sbjct: 565 HLQQYLVAQS 574
[6][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 204 bits (519), Expect = 3e-51
Identities = 101/130 (77%), Positives = 118/130 (90%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
ATGLSMKRL AVLL+PK PRSL+QKIGIN NLKPSEVIADPEAET+E+ L+ QFM++DL+
Sbjct: 443 ATGLSMKRLMAVLLSPKPPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQFMRQDLD 502
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
KVLDSL+ REKQVIRWRFGM+DGRMK QEIGE +GVSRER+R I++ AFRKLKN+KRN
Sbjct: 503 KVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQIDTSAFRKLKNKKRNS 562
Query: 92 HLQQYLVSQS 63
HLQQYLV+Q+
Sbjct: 563 HLQQYLVAQT 572
[7][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 202 bits (513), Expect = 1e-50
Identities = 100/128 (78%), Positives = 117/128 (91%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
A GLSMKRLSAVLLTPKAPRSL+QKIG+N +LKPSEVIADPEAETAEE L+ QFMK+DLE
Sbjct: 442 AAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLE 501
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
KVL++LNPRE QV+RWRFG++DGRMK QEIGE++GVSRERIR IES AFRKLKN+KR +
Sbjct: 502 KVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTK 561
Query: 92 HLQQYLVS 69
L+QYL++
Sbjct: 562 QLKQYLLA 569
[8][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 196 bits (499), Expect = 5e-49
Identities = 97/126 (76%), Positives = 114/126 (90%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
ATGLSMKRL+AVL+TPKAPRSL+QKIG N NLKPSEVIADPEAETAE+ L QFM++DLE
Sbjct: 448 ATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLE 507
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
KVLD+L+ REKQVIRWRFG++DGRMK QEIGE++GVSRERIR IES AFRKL+N+K+
Sbjct: 508 KVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTI 567
Query: 92 HLQQYL 75
+LQQY+
Sbjct: 568 NLQQYM 573
[9][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 194 bits (494), Expect = 2e-48
Identities = 98/128 (76%), Positives = 113/128 (88%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
ATGLSMKRLSAVLLTPKAPRSL+QK+G N +LK SEV ADPEAETAE+ L+ +FMKKDLE
Sbjct: 437 ATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLE 496
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
+VL+SL+PRE QVIRWRFGM+DGRMK QEIGE++GVSRERIR IE AFRKLKN+ R +
Sbjct: 497 RVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTK 556
Query: 92 HLQQYLVS 69
L+QYLVS
Sbjct: 557 QLRQYLVS 564
[10][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 187 bits (476), Expect = 2e-46
Identities = 93/128 (72%), Positives = 110/128 (85%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
A GLSMKRLSAVLLTPKAPRSL+QK+G N +LK SEV ADPEAETAE+ L+ +FMKKDL
Sbjct: 440 AAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLA 499
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
KVL SL+PRE QV+RWRFGM+DGRMK QEIGE++GVSRER+R IE AFRKLKN+ R +
Sbjct: 500 KVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRKLKNKNRTK 559
Query: 92 HLQQYLVS 69
L+QY+V+
Sbjct: 560 QLRQYMVA 567
[11][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 125 bits (315), Expect = 1e-27
Identities = 67/127 (52%), Positives = 90/127 (70%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L MK+D+ K
Sbjct: 435 TGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHK 493
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD+L RE+QV+ RFG++DGR++ QEIG +GVSRERIR IES AFRKL+++KR
Sbjct: 494 ALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNA 553
Query: 89 LQQYLVS 69
L+ YLV+
Sbjct: 554 LKDYLVT 560
[12][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 125 bits (314), Expect = 1e-27
Identities = 67/126 (53%), Positives = 89/126 (70%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L MK+D+ K
Sbjct: 435 TGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHK 493
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD+L RE+QV+ RFG++DGR++ QEIG +GVSRERIR IES AFRKL+++KR
Sbjct: 494 ALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNA 553
Query: 89 LQQYLV 72
L+ YLV
Sbjct: 554 LKDYLV 559
[13][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 125 bits (314), Expect = 1e-27
Identities = 67/126 (53%), Positives = 89/126 (70%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L MK+D+ K
Sbjct: 435 TGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHK 493
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD+L RE+QV+ RFG++DGR++ QEIG +GVSRERIR IES AFRKL+++KR
Sbjct: 494 ALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNA 553
Query: 89 LQQYLV 72
L+ YLV
Sbjct: 554 LKDYLV 559
[14][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
bicolor RepID=C6JRK5_SORBI
Length = 238
Score = 125 bits (314), Expect = 1e-27
Identities = 68/126 (53%), Positives = 90/126 (71%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L MKKD+ K
Sbjct: 109 TGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSMKKDVHK 167
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD+L REKQV+ RFG++D R++ QEIG ++GVSRERIR IES AFRKL+++KR +
Sbjct: 168 ALDTLTTREKQVVVLRFGLEDDRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKRVKA 227
Query: 89 LQQYLV 72
L+ YLV
Sbjct: 228 LKDYLV 233
[15][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 125 bits (314), Expect = 1e-27
Identities = 67/126 (53%), Positives = 89/126 (70%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L MK+D+ K
Sbjct: 434 TGMPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPTAETAEEMLNRLSMKRDVHK 492
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD+L RE+QV+ RFG++DGR++ QEIG +GVSRERIR IES AFRKL+++KR
Sbjct: 493 ALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNA 552
Query: 89 LQQYLV 72
L+ YLV
Sbjct: 553 LKDYLV 558
[16][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 124 bits (312), Expect = 3e-27
Identities = 67/126 (53%), Positives = 90/126 (71%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG+ +KR+ A + PK SL+ KIG + ++ EV ADP AETAEE L MKKD+
Sbjct: 410 TGIPIKRVEAAVNLPKYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSMKKDVHM 468
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD+L REKQV+ RFG++DGR++ QEIG ++GVSRERIR IES AFRKL+++K+ +
Sbjct: 469 ALDTLTTREKQVVVLRFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKA 528
Query: 89 LQQYLV 72
L+ YLV
Sbjct: 529 LKDYLV 534
[17][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 123 bits (309), Expect = 6e-27
Identities = 62/125 (49%), Positives = 86/125 (68%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG+ ++R+ A + PK SL K+G ++ E+ D ETAEE L MK+D+++
Sbjct: 411 TGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKEDVDR 469
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD L+PRE+QVIR+RFGMDDGR++ +IG ++GVSRERIR IE AFRKL+ +K+ Q
Sbjct: 470 ALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQS 529
Query: 89 LQQYL 75
LQ YL
Sbjct: 530 LQHYL 534
[18][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 123 bits (309), Expect = 6e-27
Identities = 62/125 (49%), Positives = 86/125 (68%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG+ ++R+ A + PK SL K+G ++ E+ D ETAEE L MK+D+++
Sbjct: 214 TGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKEDVDR 272
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD L+PRE+QVIR+RFGMDDGR++ +IG ++GVSRERIR IE AFRKL+ +K+ Q
Sbjct: 273 ALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQS 332
Query: 89 LQQYL 75
LQ YL
Sbjct: 333 LQHYL 337
[19][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 123 bits (309), Expect = 6e-27
Identities = 62/125 (49%), Positives = 86/125 (68%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG+ ++R+ A + PK SL K+G ++ E+ D ETAEE L MK+D+++
Sbjct: 368 TGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKEDVDR 426
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD L+PRE+QVIR+RFGMDDGR++ +IG ++GVSRERIR IE AFRKL+ +K+ Q
Sbjct: 427 ALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQS 486
Query: 89 LQQYL 75
LQ YL
Sbjct: 487 LQHYL 491
[20][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 123 bits (309), Expect = 6e-27
Identities = 62/125 (49%), Positives = 86/125 (68%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG+ ++R+ A + PK SL K+G ++ E+ D ETAEE L MK+D+++
Sbjct: 411 TGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQEITPDTSTETAEEMLHRWLMKEDVDR 469
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD L+PRE+QVIR+RFGMDDGR++ +IG ++GVSRERIR IE AFRKL+ +K+ Q
Sbjct: 470 ALDGLSPRERQVIRYRFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQS 529
Query: 89 LQQYL 75
LQ YL
Sbjct: 530 LQHYL 534
[21][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 119 bits (297), Expect = 1e-25
Identities = 59/124 (47%), Positives = 83/124 (66%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+SM RL V + P SL++ +G + + K SE++AD +E+ E + + KKDL++V
Sbjct: 370 GISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRV 429
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
LD+L REKQV+R R+G+DDGRMK E+GE +SRER+R IE A RKL+ R QHL
Sbjct: 430 LDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHL 489
Query: 86 QQYL 75
+ YL
Sbjct: 490 KHYL 493
[22][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 119 bits (297), Expect = 1e-25
Identities = 59/124 (47%), Positives = 83/124 (66%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+SM RL V + P SL++ +G + + K SE++AD +E+ E + + KKDL++V
Sbjct: 467 GISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRV 526
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
LD+L REKQV+R R+G+DDGRMK E+GE +SRER+R IE A RKL+ R QHL
Sbjct: 527 LDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHL 586
Query: 86 QQYL 75
+ YL
Sbjct: 587 KHYL 590
[23][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 118 bits (296), Expect = 2e-25
Identities = 56/124 (45%), Positives = 91/124 (73%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
GL++++L +V+ + KAP S+E+ IG + + E++AD + ++ E+ ++ Q M++D+E V
Sbjct: 449 GLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQLMRQDIEGV 508
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
L +LNPRE++V+R RFG+DDGR K +EIG++ V+RERIR IE+ A RKL+ RN L
Sbjct: 509 LRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNSIL 568
Query: 86 QQYL 75
++YL
Sbjct: 569 REYL 572
[24][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 116 bits (290), Expect = 9e-25
Identities = 60/125 (48%), Positives = 86/125 (68%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG++++R+ A + PK S K+G ++ E++ D AETAEE L MKKD+
Sbjct: 398 TGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTSAETAEETLHRWLMKKDVNT 456
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LDSL+PR+KQV+R+RFG++ GR + +IG+++GVSRERIR IE AFRKL+++ R Q
Sbjct: 457 ALDSLSPRKKQVMRYRFGIEGGRARTLHDIGQLMGVSRERIRQIELGAFRKLRSKNRLQS 516
Query: 89 LQQYL 75
LQ YL
Sbjct: 517 LQHYL 521
[25][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 114 bits (285), Expect = 3e-24
Identities = 60/125 (48%), Positives = 86/125 (68%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
TG++++R+ A + PK S K+G ++ E++ D AETAEE L MKKD+
Sbjct: 399 TGMTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTSAETAEEVLHRWLMKKDVNT 457
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
L+SL+PREK V+R+RFG++ GR + +IG+++GVSRERIR IE AFRKL+++KR Q
Sbjct: 458 ALESLSPREKLVMRYRFGIEGGRPRTLHDIGQIMGVSRERIRQIELGAFRKLRSKKRVQS 517
Query: 89 LQQYL 75
LQ YL
Sbjct: 518 LQHYL 522
[26][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 112 bits (279), Expect = 2e-23
Identities = 54/124 (43%), Positives = 88/124 (70%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+S+++L ++ + K P S+++ IG ++ E+IAD + E+ E+ LI Q +K+D++ V
Sbjct: 463 GMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQVLKQDVDGV 522
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
L +LNPRE++V+R RFG+DDG+ + +EIG + V+RERIR IE+ A RKL+ RN L
Sbjct: 523 LCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLRQPSRNGVL 582
Query: 86 QQYL 75
++YL
Sbjct: 583 REYL 586
[27][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 107 bits (268), Expect = 3e-22
Identities = 53/123 (43%), Positives = 87/123 (70%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+Q+ +++DLEKVL
Sbjct: 267 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVL 325
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
DSL+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 326 DSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 385
Query: 83 QYL 75
+Y+
Sbjct: 386 EYI 388
[28][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 107 bits (268), Expect = 3e-22
Identities = 53/123 (43%), Positives = 87/123 (70%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+Q+ +++DLEKVL
Sbjct: 269 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVL 327
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
DSL+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 328 DSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 387
Query: 83 QYL 75
+Y+
Sbjct: 388 EYI 390
[29][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 107 bits (268), Expect = 3e-22
Identities = 53/123 (43%), Positives = 87/123 (70%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+Q+ +++DLEKVL
Sbjct: 268 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLEKVL 326
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
DSL+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 327 DSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 386
Query: 83 QYL 75
+Y+
Sbjct: 387 EYI 389
[30][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 105 bits (262), Expect = 2e-21
Identities = 56/130 (43%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIG-INQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
+S+++++ + +AP SL Q +G N+ + + D AE E+ +K+DLE V
Sbjct: 391 MSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLIDANAEGPEKVSGKSLLKEDLENV 450
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
L++LNPRE+ V+R R+G+DDGR+K +EIG + V+RERIR IE+ A RKLK RNQ L
Sbjct: 451 LNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNQVL 510
Query: 86 QQYLVSQS*P 57
Q+Y V + P
Sbjct: 511 QEYFVDDAPP 520
[31][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 104 bits (260), Expect = 3e-21
Identities = 51/123 (41%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+Q+ +++DLE VL
Sbjct: 265 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLESVL 323
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 324 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 383
Query: 83 QYL 75
+Y+
Sbjct: 384 EYI 386
[32][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 104 bits (260), Expect = 3e-21
Identities = 51/123 (41%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+Q+ +++DLE VL
Sbjct: 258 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKNLLREDLESVL 316
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 317 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 376
Query: 83 QYL 75
+Y+
Sbjct: 377 EYI 379
[33][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 104 bits (260), Expect = 3e-21
Identities = 51/123 (41%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+Q+ +++DLE VL
Sbjct: 269 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLESVL 327
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 328 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 387
Query: 83 QYL 75
+Y+
Sbjct: 388 EYI 390
[34][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 103 bits (257), Expect = 6e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 254 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVL 312
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 313 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 372
Query: 83 QYL 75
+Y+
Sbjct: 373 EYI 375
[35][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 103 bits (257), Expect = 6e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 294 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVL 352
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 353 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 412
Query: 83 QYL 75
+Y+
Sbjct: 413 EYI 415
[36][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 103 bits (257), Expect = 6e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 294 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVL 352
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 353 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 412
Query: 83 QYL 75
+Y+
Sbjct: 413 EYI 415
[37][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 103 bits (257), Expect = 6e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 292 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVL 350
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 351 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 410
Query: 83 QYL 75
+Y+
Sbjct: 411 EYI 413
[38][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 103 bits (257), Expect = 6e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 255 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVL 313
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 314 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 373
Query: 83 QYL 75
+Y+
Sbjct: 374 EYI 376
[39][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 103 bits (257), Expect = 6e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 294 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVL 352
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 353 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 412
Query: 83 QYL 75
+Y+
Sbjct: 413 EYI 415
[40][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 103 bits (257), Expect = 6e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 294 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVL 352
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 353 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 412
Query: 83 QYL 75
+Y+
Sbjct: 413 EYI 415
[41][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 103 bits (257), Expect = 6e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 294 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVL 352
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 353 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 412
Query: 83 QYL 75
+Y+
Sbjct: 413 EYI 415
[42][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 103 bits (257), Expect = 6e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 303 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVL 361
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 362 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 421
Query: 83 QYL 75
+Y+
Sbjct: 422 EYI 424
[43][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 103 bits (257), Expect = 6e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 294 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVL 352
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 353 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 412
Query: 83 QYL 75
+Y+
Sbjct: 413 EYI 415
[44][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 103 bits (256), Expect = 8e-21
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+Q+ +++DLE VL
Sbjct: 249 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKSLLREDLETVL 307
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V++ R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 308 DTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 367
Query: 83 QYL 75
+Y+
Sbjct: 368 EYI 370
[45][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 102 bits (255), Expect = 1e-20
Identities = 50/123 (40%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 264 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKNLLREDLESVL 322
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+SL+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 323 NSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 382
Query: 83 QYL 75
+Y+
Sbjct: 383 EYI 385
[46][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 102 bits (253), Expect = 2e-20
Identities = 50/123 (40%), Positives = 85/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + E ET EE++ +++DLE VL
Sbjct: 282 ITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESEGETPEERVAKVLLREDLESVL 340
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L PRE+ V++ R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 341 ETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 400
Query: 83 QYL 75
+Y+
Sbjct: 401 EYI 403
[47][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 101 bits (252), Expect = 2e-20
Identities = 49/123 (39%), Positives = 86/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 278 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDKVAKNLLREDLEAVL 336
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 337 NTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLK 396
Query: 83 QYL 75
+Y+
Sbjct: 397 EYI 399
[48][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 101 bits (252), Expect = 2e-20
Identities = 50/123 (40%), Positives = 85/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+Q+ +++DLE VL
Sbjct: 253 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDQVSKSLLREDLENVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+ RE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 312 DTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 371
Query: 83 QYL 75
+Y+
Sbjct: 372 EYI 374
[49][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 101 bits (252), Expect = 2e-20
Identities = 49/123 (39%), Positives = 85/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+++ +++DLE VL
Sbjct: 257 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGENPEDEVSKNLLREDLENVL 315
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 316 DTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 375
Query: 83 QYL 75
+Y+
Sbjct: 376 EYI 378
[50][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 101 bits (251), Expect = 3e-20
Identities = 49/123 (39%), Positives = 85/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 277 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLLREDLEGVL 335
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 336 STLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILK 395
Query: 83 QYL 75
+Y+
Sbjct: 396 EYI 398
[51][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 101 bits (251), Expect = 3e-20
Identities = 49/123 (39%), Positives = 85/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 282 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDEVSKSLLREDLESVL 340
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 341 STLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 400
Query: 83 QYL 75
+Y+
Sbjct: 401 EYI 403
[52][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 101 bits (251), Expect = 3e-20
Identities = 49/123 (39%), Positives = 85/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 277 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVAKNLLREDLEGVL 335
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 336 STLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILK 395
Query: 83 QYL 75
+Y+
Sbjct: 396 EYI 398
[53][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 100 bits (248), Expect = 7e-20
Identities = 49/123 (39%), Positives = 85/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+Q+ +++DLE VL
Sbjct: 296 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKHLLREDLETVL 354
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V++ R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 355 CTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLK 414
Query: 83 QYL 75
+Y+
Sbjct: 415 EYI 417
[54][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 100 bits (248), Expect = 7e-20
Identities = 49/123 (39%), Positives = 85/123 (69%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+Q+ +++DLE VL
Sbjct: 256 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDQVSKNLLREDLETVL 314
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V++ R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 315 CTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLK 374
Query: 83 QYL 75
+Y+
Sbjct: 375 EYI 377
[55][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 99.8 bits (247), Expect = 9e-20
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 1/123 (0%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIG-INQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
+S ++++ + +AP SL Q +G N+ + + D AE E+ +K+DLE V
Sbjct: 205 MSAEKITQIKKAAQAPVSLAQTMGGDNKGRTVEDTLVDVTAEGPEKVSGKSLLKEDLENV 264
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
L++LNPRE+ V+R R+G+DDGR+K +EIG + V+RERIR IE+ A RKLK RN L
Sbjct: 265 LNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNSIL 324
Query: 86 QQY 78
Q+Y
Sbjct: 325 QEY 327
[56][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 98.2 bits (243), Expect = 3e-19
Identities = 48/124 (38%), Positives = 79/124 (63%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+S +++ ++ + P SLE IG ++ + I D EA+ E+ +++ L +V
Sbjct: 245 GISPEKVREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEASYALLREQLNEV 304
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
L SL PRE++V+R RFG+DDGR + +E+G+ GV+RERIR IE+ RKL++ R++ L
Sbjct: 305 LQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKL 364
Query: 86 QQYL 75
+ YL
Sbjct: 365 KDYL 368
[57][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 97.4 bits (241), Expect = 4e-19
Identities = 49/123 (39%), Positives = 80/123 (65%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S++R+ ++ + P SLE IG ++ + I D +A E +K+ LE+VL
Sbjct: 244 ISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVL 303
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L PRE++V+R RFG+DDGR + +E+G+ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 304 ETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 363
Query: 83 QYL 75
YL
Sbjct: 364 DYL 366
[58][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 97.4 bits (241), Expect = 4e-19
Identities = 49/123 (39%), Positives = 80/123 (65%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S++R+ ++ + P SLE IG ++ + I D +A E +K+ LE+VL
Sbjct: 249 ISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVL 308
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L PRE++V+R RFG+DDGR + +E+G+ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 309 ETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 368
Query: 83 QYL 75
YL
Sbjct: 369 DYL 371
[59][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 97.4 bits (241), Expect = 4e-19
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++++ + P SL Q + + + E + D AE ++ +K+DLE VL
Sbjct: 447 MTVEKINQIQKASLVPISLSQSVNDDDSRTVEETLVDDHAEHPDDATGKVLLKEDLENVL 506
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L+PRE+ V+R R+GMDDGR+K +EIG + V+RERIR IE+ A RKL+ RN L+
Sbjct: 507 NTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQPSRNGILR 566
Query: 83 QYL 75
+YL
Sbjct: 567 EYL 569
[60][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 97.1 bits (240), Expect = 6e-19
Identities = 49/123 (39%), Positives = 79/123 (64%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ ++R+ + + P SLE IG ++ + I D +A+ E +++ LE+VL
Sbjct: 238 IPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDEDAQAPAEAASFMLLREQLEEVL 297
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+SL PREK+V+R RFG+DDGR + +E+G+ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 298 NSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 357
Query: 83 QYL 75
YL
Sbjct: 358 DYL 360
[61][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 97.1 bits (240), Expect = 6e-19
Identities = 48/123 (39%), Positives = 80/123 (65%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S++R+ ++ + P SLE IG ++ + I D +A E +K+ LE+VL
Sbjct: 245 ISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L PRE++V+R RFG+DDGR + +E+G+ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 ETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLRHPSRSKKLK 364
Query: 83 QYL 75
+L
Sbjct: 365 DFL 367
[62][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 96.7 bits (239), Expect = 7e-19
Identities = 49/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ E + +K+ LE VL
Sbjct: 214 LPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSEHAAYELLKEQLEDVL 273
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 274 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 333
Query: 83 QYL 75
+L
Sbjct: 334 DFL 336
[63][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 96.7 bits (239), Expect = 7e-19
Identities = 49/123 (39%), Positives = 79/123 (64%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ ++R+ + + P SLE IG ++ + I D +A E +K+ LE+VL
Sbjct: 265 IPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFTLLKEQLEEVL 324
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+SL PRE++V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 325 ESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKKLK 384
Query: 83 QYL 75
YL
Sbjct: 385 DYL 387
[64][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 96.7 bits (239), Expect = 7e-19
Identities = 47/123 (38%), Positives = 84/123 (68%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + ET E+++ +++DLE VL
Sbjct: 281 ITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDGETPEDRVAKVLLREDLESVL 339
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L RE+ V++ R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 340 ETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 399
Query: 83 QYL 75
+Y+
Sbjct: 400 EYI 402
[65][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 96.7 bits (239), Expect = 7e-19
Identities = 49/123 (39%), Positives = 79/123 (64%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
LS++++ ++ + P SLE IG + + I D EA T + + +K+ LE VL
Sbjct: 254 LSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVL 313
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 314 DTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 373
Query: 83 QYL 75
+L
Sbjct: 374 DFL 376
[66][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 96.3 bits (238), Expect = 1e-18
Identities = 49/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + E + +K+ LE VL
Sbjct: 251 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVL 310
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 311 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 370
Query: 83 QYL 75
+L
Sbjct: 371 DFL 373
[67][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 96.3 bits (238), Expect = 1e-18
Identities = 48/123 (39%), Positives = 79/123 (64%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 252 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[68][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 96.3 bits (238), Expect = 1e-18
Identities = 48/123 (39%), Positives = 79/123 (64%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 17 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVL 76
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 77 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 136
Query: 83 QYL 75
+L
Sbjct: 137 DFL 139
[69][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 96.3 bits (238), Expect = 1e-18
Identities = 49/120 (40%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
K++ +L + P SLE IG + + I D +A + + + MKK LE VLD+L
Sbjct: 261 KKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTL 320
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 321 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 380
[70][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 96.3 bits (238), Expect = 1e-18
Identities = 49/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + E + +K+ LE VL
Sbjct: 254 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVL 313
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 314 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 373
Query: 83 QYL 75
+L
Sbjct: 374 DFL 376
[71][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 96.3 bits (238), Expect = 1e-18
Identities = 49/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + E + +K+ LE VL
Sbjct: 252 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[72][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 339 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNLLREDLEGVL 397
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 398 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLK 457
Query: 83 QYL 75
+Y+
Sbjct: 458 EYI 460
[73][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 349 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 407
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 408 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 467
Query: 83 QYL 75
+Y+
Sbjct: 468 EYI 470
[74][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 329 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 387
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 388 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 447
Query: 83 QYL 75
+Y+
Sbjct: 448 EYI 450
[75][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 313 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 371
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 372 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 431
Query: 83 QYL 75
+Y+
Sbjct: 432 EYI 434
[76][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
++ ++ +L + P SLE IG + + I D +A + EE + +K+ LE VL
Sbjct: 246 MNTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVL 305
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 306 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 365
Query: 83 QYL 75
+L
Sbjct: 366 DFL 368
[77][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 318 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 376
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 377 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 436
Query: 83 QYL 75
+Y+
Sbjct: 437 EYI 439
[78][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 328 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 386
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 387 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 446
Query: 83 QYL 75
+Y+
Sbjct: 447 EYI 449
[79][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 322 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDTENPEQDVAKNLLREDLEGVL 380
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 381 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLK 440
Query: 83 QYL 75
+Y+
Sbjct: 441 EYI 443
[80][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 329 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 387
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 388 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 447
Query: 83 QYL 75
+Y+
Sbjct: 448 EYI 450
[81][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 357 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 415
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 416 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 475
Query: 83 QYL 75
+Y+
Sbjct: 476 EYI 478
[82][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 336 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 394
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 395 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 454
Query: 83 QYL 75
+Y+
Sbjct: 455 EYI 457
[83][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 381 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 439
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 440 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 499
Query: 83 QYL 75
+Y+
Sbjct: 500 EYI 502
[84][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 325 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 383
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 384 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 443
Query: 83 QYL 75
+Y+
Sbjct: 444 EYI 446
[85][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 334 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 392
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 393 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 452
Query: 83 QYL 75
+Y+
Sbjct: 453 EYI 455
[86][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 347 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 405
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 406 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 465
Query: 83 QYL 75
+Y+
Sbjct: 466 EYI 468
[87][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 338 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKNLLREDLEGVL 396
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 397 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 456
Query: 83 QYL 75
+Y+
Sbjct: 457 EYI 459
[88][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 95.5 bits (236), Expect = 2e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 296 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLLREDLEGVL 354
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 355 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 414
Query: 83 QYL 75
+Y+
Sbjct: 415 EYI 417
[89][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 95.5 bits (236), Expect = 2e-18
Identities = 49/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S ++ +L + P SLE IG + + I D +A+ + + +K LE+VL
Sbjct: 237 MSEDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAKPPADAAAFELLKGQLEEVL 296
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
DSL PRE++V+R RFG+DDG+ + +E+G+ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 297 DSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRKLRHPMRSKRLK 356
Query: 83 QYL 75
YL
Sbjct: 357 DYL 359
[90][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 95.5 bits (236), Expect = 2e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 296 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVAKTLLREDLEGVL 354
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 355 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 414
Query: 83 QYL 75
+Y+
Sbjct: 415 EYI 417
[91][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 95.5 bits (236), Expect = 2e-18
Identities = 49/126 (38%), Positives = 80/126 (63%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
A +S++R+ ++ + P SLE IG ++ + I D +A E +K+ LE
Sbjct: 249 AMEISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLE 308
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
+VLD+L RE++V+R RFG+DDGR + +E+G+ GV+RERIR IE+ A RKL++ R++
Sbjct: 309 EVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSR 368
Query: 92 HLQQYL 75
L+ +L
Sbjct: 369 KLKDFL 374
[92][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 95.5 bits (236), Expect = 2e-18
Identities = 49/123 (39%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA + E + +K+ LE VL
Sbjct: 246 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVL 305
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 306 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 365
Query: 83 QYL 75
+L
Sbjct: 366 DFL 368
[93][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 95.5 bits (236), Expect = 2e-18
Identities = 47/124 (37%), Positives = 87/124 (70%), Gaps = 1/124 (0%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S K+ +L + SLE+ +G ++N K ++IAD EA E+L + +K+ +++VL
Sbjct: 150 ISEKKAKVLLEIVQGIVSLEEPVGEDENGKLGDIIADKEAVDPVEELESMLLKEQVDEVL 209
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIG-EMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
+L PRE++V+R RFG+DDG+++ +E+G E+ G+SRER+R IE+ A ++L++ R++ L
Sbjct: 210 STLAPREEKVLRLRFGLDDGKIRTLEEVGKELGGISRERVRQIETKALKRLRHPNRSRRL 269
Query: 86 QQYL 75
+++L
Sbjct: 270 KEFL 273
[94][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 95.5 bits (236), Expect = 2e-18
Identities = 49/123 (39%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA + E + +K+ LE VL
Sbjct: 246 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVL 305
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 306 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 365
Query: 83 QYL 75
+L
Sbjct: 366 DFL 368
[95][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 95.5 bits (236), Expect = 2e-18
Identities = 47/123 (38%), Positives = 79/123 (64%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA++ + + +K+ LE V+
Sbjct: 252 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVI 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[96][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 95.5 bits (236), Expect = 2e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ VL + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[97][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 250 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[98][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 250 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[99][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 250 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[100][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[101][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/120 (40%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + + + MKK LE VLD+L
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTL 319
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 320 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[102][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[103][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[104][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 219 LPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 278
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 279 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 338
Query: 83 QYL 75
++
Sbjct: 339 DFM 341
[105][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[106][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D +A + E + +K+ LE VL
Sbjct: 252 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[107][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/120 (40%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + + + MKK LE VLD+L
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTL 319
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 320 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[108][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/120 (40%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + + + MKK LE VLD+L
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTL 319
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 320 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[109][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
RepID=A5VJI3_LACRD
Length = 380
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/120 (40%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + + + MKK LE VLD+L
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTL 319
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 320 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[110][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XRX4_LACRE
Length = 380
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/120 (40%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + + + MKK LE VLD+L
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTL 319
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 320 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[111][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/127 (37%), Positives = 81/127 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S+++L VL + + SLE+ + + + + + E+ EE + ++ DLE V+
Sbjct: 302 MSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVEKSMLRDDLENVI 361
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+SL+PRE+ V+R R+G+DDGR+K +EIG++ V+RER+R IE+ A RKL+ R+ L+
Sbjct: 362 NSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILR 421
Query: 83 QYLVSQS 63
Y+ S S
Sbjct: 422 DYVASNS 428
[112][TOP]
>UniRef100_A9RG56 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RG56_PHYPA
Length = 581
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/126 (38%), Positives = 84/126 (66%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
A G+S+++L +L + + P S++Q IG +++L E++AD +A++ L N+ +K+D++
Sbjct: 452 AVGISVEKLDFILKSARLPASMDQLIGRDKDLPLWEMVADKGFNSADDFLTNEVLKQDID 511
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
VL +L+P E++V+R RFG+DD + ++IG V+RERIR IE A RKL++ R
Sbjct: 512 GVLQTLSPTEREVLRLRFGLDDAQSMTLKDIGIFFKVTRERIRQIEVRALRKLRHPTRRN 571
Query: 92 HLQQYL 75
LQ ++
Sbjct: 572 ILQGHV 577
[113][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 95.1 bits (235), Expect = 2e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[114][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 95.1 bits (235), Expect = 2e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 248 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVL 307
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 308 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 367
Query: 83 QYL 75
+L
Sbjct: 368 DFL 370
[115][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 250 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[116][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
LS++++ ++ + P SLE IG + + I D EA + + +K+ LE VL
Sbjct: 254 LSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVL 313
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 314 DTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 373
Query: 83 QYL 75
+L
Sbjct: 374 DFL 376
[117][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 274 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVL 332
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 333 ATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 392
Query: 83 QYL 75
+Y+
Sbjct: 393 EYI 395
[118][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[119][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[120][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/124 (36%), Positives = 81/124 (65%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+S ++ ++ + P SLE IG ++ + + DP+A+ E+ +++ L++V
Sbjct: 246 GISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEV 305
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
L +L RE++V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L
Sbjct: 306 LKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKL 365
Query: 86 QQYL 75
+ +L
Sbjct: 366 KDFL 369
[121][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 271 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVL 329
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 330 ATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 389
Query: 83 QYL 75
+Y+
Sbjct: 390 EYI 392
[122][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 250 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[123][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 252 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[124][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D +A + E + +K+ LE VL
Sbjct: 249 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVL 308
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 309 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 368
Query: 83 QYL 75
+L
Sbjct: 369 DFL 371
[125][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 271 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVL 329
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 330 ATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 389
Query: 83 QYL 75
+Y+
Sbjct: 390 EYI 392
[126][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 250 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[127][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 272 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVL 330
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 331 ATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 390
Query: 83 QYL 75
+Y+
Sbjct: 391 EYI 393
[128][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 275 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVL 333
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 334 ATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 393
Query: 83 QYL 75
+Y+
Sbjct: 394 EYI 396
[129][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 272 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVL 330
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 331 ATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 390
Query: 83 QYL 75
+Y+
Sbjct: 391 EYI 393
[130][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/120 (39%), Positives = 77/120 (64%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + E+ + +K+ LE VLD+L
Sbjct: 296 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTL 355
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 356 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[131][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
LS++++ ++ + P SLE IG + + I D EA + + +K+ LE VL
Sbjct: 251 LSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVL 310
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 311 DTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 370
Query: 83 QYL 75
+L
Sbjct: 371 DFL 373
[132][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[133][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[134][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/120 (39%), Positives = 77/120 (64%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + E+ + +K+ LE VLD+L
Sbjct: 232 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTL 291
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 292 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 351
[135][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 244 LPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 303
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 304 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 363
Query: 83 QYL 75
++
Sbjct: 364 DFM 366
[136][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 250 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[137][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 252 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[138][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 250 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[139][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 252 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[140][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 252 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[141][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 252 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[142][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 252 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[143][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 252 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[144][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[145][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/120 (39%), Positives = 77/120 (64%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + E+ + +K+ LE VLD+L
Sbjct: 296 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTL 355
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 356 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[146][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/120 (39%), Positives = 77/120 (64%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + E+ + +K+ LE VLD+L
Sbjct: 302 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTL 361
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 362 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 421
[147][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
RepID=B2GBZ9_LACF3
Length = 380
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ +++ +L + P SLE IG + + I D +A + + + MKK LE VL
Sbjct: 257 MDTQKVRDILKISQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVL 316
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G + GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 317 DTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 376
Query: 83 QYL 75
+L
Sbjct: 377 DFL 379
[148][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GBZ7_9FIRM
Length = 372
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S +R+ +L + P SLE IG + + I D + + E + +K+ L+ VL
Sbjct: 249 ISEERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDVQAPAEAAAFELLKEQLDDVL 308
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L PREK+V+ RFG++DGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 309 ETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRHPMRSKRLK 368
Query: 83 QYL 75
YL
Sbjct: 369 DYL 371
[149][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E E+ + +++DLE VL
Sbjct: 271 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPEQDVSKTLLREDLEGVL 329
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 330 ATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 389
Query: 83 QYL 75
+Y+
Sbjct: 390 EYI 392
[150][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[151][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 252 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[152][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/120 (39%), Positives = 77/120 (64%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + E+ + +K+ LE VLD+L
Sbjct: 296 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTL 355
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 356 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[153][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 94.7 bits (234), Expect = 3e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 250 LAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[154][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 94.7 bits (234), Expect = 3e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA++ + + +K+ LE VL
Sbjct: 245 LPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
++
Sbjct: 365 DFM 367
[155][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + ++E E + +++DLE VL
Sbjct: 316 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTLLREDLEGVL 374
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 375 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 434
Query: 83 QYL 75
+Y+
Sbjct: 435 EYI 437
[156][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/119 (39%), Positives = 76/119 (63%)
Frame = -1
Query: 431 RLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLN 252
++ +L + P SLE IG + + I D +A + E+ + +K+ LE+VLD+L
Sbjct: 253 KVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLT 312
Query: 251 PREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R+ L+ +L
Sbjct: 313 DREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371
[157][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/123 (39%), Positives = 83/123 (67%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + ++E E + +++DLE VL
Sbjct: 303 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-ESDSENPELDVAKTLLREDLEGVL 361
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A RKL++ RN L+
Sbjct: 362 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLK 421
Query: 83 QYL 75
+Y+
Sbjct: 422 EYI 424
[158][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
delbrueckii subsp. lactis RepID=Q71HU9_LACDL
Length = 167
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/123 (39%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +K++ VL + P SLE IG + + I D +A + E+ ++ +K L +VL
Sbjct: 44 LPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVL 103
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDG + +E+G + GV+RERIR IE+ A RKL++ R+ L+
Sbjct: 104 DTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLR 163
Query: 83 QYL 75
+L
Sbjct: 164 DFL 166
[159][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/123 (39%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ ++ +L + P SLE IG + + I D +A + E + +K+ LE VL
Sbjct: 251 LTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVL 310
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 311 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 370
Query: 83 QYL 75
+L
Sbjct: 371 DFL 373
[160][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
RepID=C7CSZ1_ENTFA
Length = 368
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/123 (39%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D +A + E + +K+ LE VL
Sbjct: 245 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 364
Query: 83 QYL 75
+L
Sbjct: 365 DFL 367
[161][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/119 (39%), Positives = 76/119 (63%)
Frame = -1
Query: 431 RLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLN 252
++ +L + P SLE IG + + I D +A + E+ + +K+ LE+VLD+L
Sbjct: 253 KVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLT 312
Query: 251 PREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R+ L+ +L
Sbjct: 313 DREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371
[162][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
RepID=C2C209_LISGR
Length = 389
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/123 (39%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 266 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVL 325
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G + GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 326 DTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 385
Query: 83 QYL 75
+L
Sbjct: 386 DFL 388
[163][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 94.4 bits (233), Expect = 4e-18
Identities = 47/119 (39%), Positives = 76/119 (63%)
Frame = -1
Query: 431 RLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLN 252
++ +L + P SLE IG + + I D +A + E+ + +K+ LE+VLD+L
Sbjct: 254 KVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLT 313
Query: 251 PREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R+ L+ +L
Sbjct: 314 DREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 372
[164][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 94.4 bits (233), Expect = 4e-18
Identities = 46/129 (35%), Positives = 83/129 (64%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S+++L +VL + + SLE+ + + + + + E+ EE + ++ DLE V+
Sbjct: 319 MSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVI 378
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+SL+PRE+ V+R R+G+DDGR+K +EIG++ V+RER+R IE+ A RKL+ R+ L+
Sbjct: 379 NSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILR 438
Query: 83 QYLVSQS*P 57
Y+++ P
Sbjct: 439 DYVLASLSP 447
[165][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
RepID=RPOD_ENTFA
Length = 368
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/123 (39%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D +A + E + +K+ LE VL
Sbjct: 245 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 364
Query: 83 QYL 75
+L
Sbjct: 365 DFL 367
[166][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 94.0 bits (232), Expect = 5e-18
Identities = 49/123 (39%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
LS ++ +L + P SLE IG + + I D EA + + +K+ LE VL
Sbjct: 250 LSPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[167][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 94.0 bits (232), Expect = 5e-18
Identities = 47/120 (39%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + E + +K+ LE VLD+L
Sbjct: 252 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESVLDTL 311
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 312 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 371
[168][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 94.0 bits (232), Expect = 5e-18
Identities = 49/123 (39%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
LS +++ +L + P SLE IG ++ + I D +A E +K+ L +VL
Sbjct: 249 LSEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFSLLKEQLVEVL 308
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 309 DTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSRSKKLK 368
Query: 83 QYL 75
YL
Sbjct: 369 DYL 371
[169][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 94.0 bits (232), Expect = 5e-18
Identities = 47/123 (38%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ + R+ ++ + P SLE IG ++ + I D +A + +K+ LE VL
Sbjct: 250 IGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPADAASFMLLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[170][TOP]
>UniRef100_C9AAM5 RNA polymerase sigma-43 factor n=3 Tax=Enterococcus casseliflavus
RepID=C9AAM5_ENTCA
Length = 368
Score = 94.0 bits (232), Expect = 5e-18
Identities = 48/123 (39%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D +A + E + +K+ LE VL
Sbjct: 245 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 364
Query: 83 QYL 75
+L
Sbjct: 365 DFL 367
[171][TOP]
>UniRef100_C8ZYV7 RNA polymerase sigma-43 factor n=1 Tax=Enterococcus gallinarum EG2
RepID=C8ZYV7_ENTGA
Length = 368
Score = 94.0 bits (232), Expect = 5e-18
Identities = 48/123 (39%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D +A + E + +K+ LE VL
Sbjct: 245 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 364
Query: 83 QYL 75
+L
Sbjct: 365 DFL 367
[172][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 94.0 bits (232), Expect = 5e-18
Identities = 47/115 (40%), Positives = 74/115 (64%)
Frame = -1
Query: 419 VLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLNPREK 240
+L + P SLE IG + + I D +A + E+ + +K+ LE+VLD+L RE+
Sbjct: 249 ILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEVLDTLTDREE 308
Query: 239 QVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R+ L+ +L
Sbjct: 309 NVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363
[173][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 94.0 bits (232), Expect = 5e-18
Identities = 47/120 (39%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + E + +K+ LE VLD+L
Sbjct: 252 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESVLDTL 311
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 312 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 371
[174][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C2E1K8_9LACO
Length = 364
Score = 94.0 bits (232), Expect = 5e-18
Identities = 47/115 (40%), Positives = 74/115 (64%)
Frame = -1
Query: 419 VLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLNPREK 240
+L + P SLE IG + + I D +A + E+ + +K+ LE+VLD+L RE+
Sbjct: 249 ILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEVLDTLTDREE 308
Query: 239 QVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R+ L+ +L
Sbjct: 309 NVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363
[175][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 94.0 bits (232), Expect = 5e-18
Identities = 48/123 (39%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 250 LAPEKVREILKIAQEPVSLETPIGEEGDSHLGDFIEDQEATSPADHAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[176][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/125 (36%), Positives = 82/125 (65%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S+++L +VL + + SLE+ + + + + + E+ EE + ++ DLE V+
Sbjct: 319 MSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVI 378
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+SL+PRE+ V+R R+G+DDGR+K +EIG++ V+RER+R IE+ A RKL+ R+ L+
Sbjct: 379 NSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILR 438
Query: 83 QYLVS 69
Y+++
Sbjct: 439 DYVLA 443
[177][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 93.6 bits (231), Expect = 6e-18
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D +A ++ + +K+ LE VL
Sbjct: 241 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDAAAYELLKEQLEDVL 300
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 301 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 360
Query: 83 QYL 75
+L
Sbjct: 361 DFL 363
[178][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 93.6 bits (231), Expect = 6e-18
Identities = 46/123 (37%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D +A++ + + +K+ LE VL
Sbjct: 243 LPAEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAQSPADHAAYELLKEQLEDVL 302
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 303 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 362
Query: 83 QYL 75
++
Sbjct: 363 DFM 365
[179][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 93.6 bits (231), Expect = 6e-18
Identities = 48/124 (38%), Positives = 77/124 (62%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+S+ ++ ++ + P SLE IG ++ + I D +A E +K+ L V
Sbjct: 235 GMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTLLKEQLIDV 294
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
LD+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L
Sbjct: 295 LDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKL 354
Query: 86 QQYL 75
+ YL
Sbjct: 355 KDYL 358
[180][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
13335 RepID=C8PAI1_9LACO
Length = 382
Score = 93.6 bits (231), Expect = 6e-18
Identities = 47/123 (38%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S ++ +L + P SLE IG + + I D +A + E+ + +K+ LE+VL
Sbjct: 259 MSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVL 318
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG++DGR + +E+G + GV+RERIR IE+ A RKL++ R+ L+
Sbjct: 319 DTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLK 378
Query: 83 QYL 75
+L
Sbjct: 379 DFL 381
[181][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 93.2 bits (230), Expect = 8e-18
Identities = 48/123 (39%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
LS ++ ++ + P SLE IG + + I D EA + + +K+ LE VL
Sbjct: 252 LSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVL 311
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 312 DTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 371
Query: 83 QYL 75
+L
Sbjct: 372 DFL 374
[182][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
J2-071 RepID=UPI0000F53BBC
Length = 374
Score = 93.2 bits (230), Expect = 8e-18
Identities = 47/123 (38%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D +A + + + +K+ LE VL
Sbjct: 251 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVL 310
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G + GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 311 DTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 370
Query: 83 QYL 75
+L
Sbjct: 371 DFL 373
[183][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 93.2 bits (230), Expect = 8e-18
Identities = 48/123 (39%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
LS ++ ++ + P SLE IG + + I D EA + + +K+ LE VL
Sbjct: 253 LSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVL 312
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 313 DTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 372
Query: 83 QYL 75
+L
Sbjct: 373 DFL 375
[184][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 93.2 bits (230), Expect = 8e-18
Identities = 46/123 (37%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D E ++ + + +K+ LE VL
Sbjct: 246 LPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDHAAYELLKEQLEDVL 305
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 306 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 365
Query: 83 QYL 75
++
Sbjct: 366 DFM 368
[185][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 93.2 bits (230), Expect = 8e-18
Identities = 46/123 (37%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
++ +++ +L + P SLE IG + + I D +A ++ + +K+ LE VL
Sbjct: 238 ITPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATAPQDAAAYELLKEQLEDVL 297
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 298 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 357
Query: 83 QYL 75
+L
Sbjct: 358 DFL 360
[186][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
RepID=RPOD_LISMO
Length = 374
Score = 93.2 bits (230), Expect = 8e-18
Identities = 47/123 (38%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D +A + + + +K+ LE VL
Sbjct: 251 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVL 310
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G + GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 311 DTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 370
Query: 83 QYL 75
+L
Sbjct: 371 DFL 373
[187][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
Length = 374
Score = 93.2 bits (230), Expect = 8e-18
Identities = 47/123 (38%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D +A + + + +K+ LE VL
Sbjct: 251 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVL 310
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G + GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 311 DTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 370
Query: 83 QYL 75
+L
Sbjct: 371 DFL 373
[188][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 92.8 bits (229), Expect = 1e-17
Identities = 48/123 (39%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L ++ +L + P SLE IG + + I D EA + + + +K+ LE VL
Sbjct: 257 LGPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHAAYELLKEQLEDVL 316
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 317 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 376
Query: 83 QYL 75
+L
Sbjct: 377 DFL 379
[189][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 92.8 bits (229), Expect = 1e-17
Identities = 46/123 (37%), Positives = 79/123 (64%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++ R+ ++ + P SLE IG + + I D EAE+ EE +++ L+ +L
Sbjct: 235 IAVDRVIEIMKVAQEPVSLETPIGEEDDSHLGDFITDEEAESPEESASFVLLREHLDGIL 294
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L RE++V+R RFG+DDGR + +E+G+ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 295 NTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 354
Query: 83 QYL 75
Y+
Sbjct: 355 DYI 357
[190][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F68_PEDPA
Length = 379
Score = 92.8 bits (229), Expect = 1e-17
Identities = 47/119 (39%), Positives = 75/119 (63%)
Frame = -1
Query: 431 RLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLN 252
++ +L + P SLE IG + + I D EA + + + +K+ LE VLD+L
Sbjct: 260 KVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEGVLDTLT 319
Query: 251 PREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 320 DREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 378
[191][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 92.8 bits (229), Expect = 1e-17
Identities = 47/123 (38%), Positives = 78/123 (63%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
++ +++ +L + P SLE IG + + I D EA + + Q +K+ LE VL
Sbjct: 255 VATEKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYQMLKEQLESVL 314
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG++DGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 315 DTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLR 374
Query: 83 QYL 75
+L
Sbjct: 375 DFL 377
[192][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 92.8 bits (229), Expect = 1e-17
Identities = 46/123 (37%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S ++ ++ + P SLE IG + + I D +A + + + +K+ LE VL
Sbjct: 254 ISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVL 313
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 314 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 373
Query: 83 QYL 75
+L
Sbjct: 374 DFL 376
[193][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
RepID=C0XLP2_LACHI
Length = 389
Score = 92.8 bits (229), Expect = 1e-17
Identities = 46/120 (38%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + + + +K+ LE VLD+L
Sbjct: 269 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTL 328
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 329 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 388
[194][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
11577 RepID=C0WTG9_LACBU
Length = 389
Score = 92.8 bits (229), Expect = 1e-17
Identities = 46/120 (38%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + + + +K+ LE VLD+L
Sbjct: 269 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTL 328
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 329 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 388
[195][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
Length = 372
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/123 (38%), Positives = 75/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +K++ L + P SLE IG + + I D +A + E+ ++ +K L +VL
Sbjct: 249 LPVKKVREALKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVL 308
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDG + +E+G + GV+RERIR IE+ A RKL++ R+ L+
Sbjct: 309 DTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLR 368
Query: 83 QYL 75
+L
Sbjct: 369 DFL 371
[196][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/123 (38%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ ++ ++ + P SLE IG + + I D +A E + +K+ LE+VL
Sbjct: 202 LTPDKVREIMKIAQEPVSLETPIGEENDSNLGDFIEDHDAPAPAEAAAYELLKEQLEEVL 261
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFGMDDGR + +E+G+ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 262 DTLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKRLK 321
Query: 83 QYL 75
++
Sbjct: 322 DFM 324
[197][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EU48_9BACT
Length = 387
Score = 92.4 bits (228), Expect = 1e-17
Identities = 44/124 (35%), Positives = 78/124 (62%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+++ R+ + + P SLE IG ++ + + + D + + +E NQ +++ LE++
Sbjct: 263 GVTVDRVEEIQKIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPDEAAANQILREQLEEM 322
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
L+ L REK+V+R RFG++DG +E+G GV+RERIR IE+ A RKL++ R++ L
Sbjct: 323 LEDLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKRL 382
Query: 86 QQYL 75
+ +L
Sbjct: 383 RDFL 386
[198][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
RepID=A8U8N7_9LACT
Length = 373
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/123 (38%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D +A + E + +K+ LE VL
Sbjct: 250 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPAENAAYELLKEQLEDVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +++G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[199][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/123 (38%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ +L + P SLE IG + + I D +A + + +K+ LE VL
Sbjct: 249 LTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVL 308
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 309 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 368
Query: 83 QYL 75
+L
Sbjct: 369 DFL 371
[200][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 92.0 bits (227), Expect = 2e-17
Identities = 48/123 (39%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S+ R+ ++ + P SLE IG ++ + I D +A E +K+ L VL
Sbjct: 243 ISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPAEAAAFTMLKEQLINVL 302
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 303 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 362
Query: 83 QYL 75
YL
Sbjct: 363 DYL 365
[201][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 92.0 bits (227), Expect = 2e-17
Identities = 46/123 (37%), Positives = 82/123 (66%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+++++L + + + P SLE IG ++ + + I + + E ++ + +++DLE VL
Sbjct: 279 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADIENPDQDVAKNLLREDLEGVL 337
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
+L+PRE+ V+R R+G+DDGRMK +EIG++ V+RERIR IE+ A KL++ RN L+
Sbjct: 338 ATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALLKLRHPNRNGVLK 397
Query: 83 QYL 75
+Y+
Sbjct: 398 EYI 400
[202][TOP]
>UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC
4571 RepID=A8YVM2_LACH4
Length = 356
Score = 91.7 bits (226), Expect = 2e-17
Identities = 45/115 (39%), Positives = 74/115 (64%)
Frame = -1
Query: 419 VLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLNPREK 240
+L + P SLE IG + + I D +A + E+ + +K+ LE+VL++L RE+
Sbjct: 241 ILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREE 300
Query: 239 QVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R+ L+ ++
Sbjct: 301 NVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 355
[203][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 91.7 bits (226), Expect = 2e-17
Identities = 48/123 (39%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG ++ + I D +A E +K+ L +VL
Sbjct: 249 LPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFSLLKEQLIEVL 308
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 309 DTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSRSKKLK 368
Query: 83 QYL 75
YL
Sbjct: 369 DYL 371
[204][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
MC2 155 RepID=A0QVZ5_MYCS2
Length = 319
Score = 91.7 bits (226), Expect = 2e-17
Identities = 45/124 (36%), Positives = 79/124 (63%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
+G+ +++++ +L + P SL+ +G ++ + I D EA +AE +I++ + D+
Sbjct: 194 SGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRY 253
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
VL +L+ RE+QVIR RFG+DDG+ + +IG++ G+SRER+R IE KL+N +R
Sbjct: 254 VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADR 313
Query: 89 LQQY 78
L+ Y
Sbjct: 314 LRSY 317
[205][TOP]
>UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus
DSM 20075 RepID=C9LZ42_LACHE
Length = 370
Score = 91.7 bits (226), Expect = 2e-17
Identities = 45/115 (39%), Positives = 74/115 (64%)
Frame = -1
Query: 419 VLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLNPREK 240
+L + P SLE IG + + I D +A + E+ + +K+ LE+VL++L RE+
Sbjct: 255 ILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREE 314
Query: 239 QVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R+ L+ ++
Sbjct: 315 NVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
[206][TOP]
>UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus
RepID=C2KFH9_9LACO
Length = 370
Score = 91.7 bits (226), Expect = 2e-17
Identities = 45/115 (39%), Positives = 74/115 (64%)
Frame = -1
Query: 419 VLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLNPREK 240
+L + P SLE IG + + I D +A + E+ + +K+ LE+VL++L RE+
Sbjct: 255 ILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREE 314
Query: 239 QVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R+ L+ ++
Sbjct: 315 NVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
[207][TOP]
>UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus
RepID=C2HPX4_LACAC
Length = 370
Score = 91.7 bits (226), Expect = 2e-17
Identities = 45/115 (39%), Positives = 74/115 (64%)
Frame = -1
Query: 419 VLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLNPREK 240
+L + P SLE IG + + I D +A + E+ + +K+ LE+VL++L RE+
Sbjct: 255 ILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREE 314
Query: 239 QVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R+ L+ ++
Sbjct: 315 NVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
[208][TOP]
>UniRef100_C2FI52 RNA polymerase sigma factor n=2 Tax=Lactobacillus plantarum
RepID=C2FI52_LACPL
Length = 368
Score = 91.7 bits (226), Expect = 2e-17
Identities = 46/120 (38%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + + + +K+ LE VLD+L
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLDTL 307
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 308 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[209][TOP]
>UniRef100_C2EK73 RNA polymerase sigma factor n=1 Tax=Lactobacillus ultunensis DSM
16047 RepID=C2EK73_9LACO
Length = 370
Score = 91.7 bits (226), Expect = 2e-17
Identities = 45/115 (39%), Positives = 74/115 (64%)
Frame = -1
Query: 419 VLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSLNPREK 240
+L + P SLE IG + + I D +A + E+ + +K+ LE+VL++L RE+
Sbjct: 255 ILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREE 314
Query: 239 QVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R+ L+ ++
Sbjct: 315 NVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFM 369
[210][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 91.7 bits (226), Expect = 2e-17
Identities = 47/123 (38%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ + + P SLE IG + + I D EA + + +K+ LE VL
Sbjct: 245 LTPEKVREIQKIAQEPVSLETPIGEEDDSHLGDFIPDDEAPAPADAAAYELLKEQLEDVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
Query: 83 QYL 75
+L
Sbjct: 365 DFL 367
[211][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R970_THETN
Length = 372
Score = 91.3 bits (225), Expect = 3e-17
Identities = 47/124 (37%), Positives = 76/124 (61%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+ +++ +L + P SLE IG ++ + I D +A E +K+ L V
Sbjct: 248 GMPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAYTMLKEQLMDV 307
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
LD+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L
Sbjct: 308 LDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKL 367
Query: 86 QQYL 75
+ +L
Sbjct: 368 KDFL 371
[212][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 91.3 bits (225), Expect = 3e-17
Identities = 46/123 (37%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ +++ ++ + P SLE IG + + I D +A + + +K+ LE VL
Sbjct: 253 LTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLEDVL 312
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 313 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 372
Query: 83 QYL 75
+L
Sbjct: 373 DFL 375
[213][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 91.3 bits (225), Expect = 3e-17
Identities = 47/123 (38%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ ++R+ ++ + P SLE IG ++ + I D +A E +K+ LE+VL
Sbjct: 248 IPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILLKEQLEEVL 307
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L RE +V+R RFG+DDGR + +E+G+ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 308 ETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 367
Query: 83 QYL 75
YL
Sbjct: 368 DYL 370
[214][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
RepID=A1T7W4_MYCVP
Length = 329
Score = 91.3 bits (225), Expect = 3e-17
Identities = 45/124 (36%), Positives = 79/124 (63%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
+G+ +++++ +L + P SL+ +G ++ + I D EA +AE +I++ + D+
Sbjct: 204 SGIPVEKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRY 263
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
VL +L+ RE+QVIR RFG+DDG+ + +IG++ G+SRER+R IE KL+N +R
Sbjct: 264 VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADR 323
Query: 89 LQQY 78
L+ Y
Sbjct: 324 LRSY 327
[215][TOP]
>UniRef100_C6VQS5 RNA polymerase sigma factor n=1 Tax=Lactobacillus plantarum JDM1
RepID=C6VQS5_LACPJ
Length = 368
Score = 91.3 bits (225), Expect = 3e-17
Identities = 46/120 (38%), Positives = 76/120 (63%)
Frame = -1
Query: 434 KRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVLDSL 255
+++ +L + P SLE IG + + I D +A + + + +K+ LE VLD+L
Sbjct: 248 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLDTL 307
Query: 254 NPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYL 75
RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+ +L
Sbjct: 308 TNREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[216][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
25644 RepID=C2E8V2_9LACO
Length = 373
Score = 91.3 bits (225), Expect = 3e-17
Identities = 46/123 (37%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +++ +L + P SLE IG + + I D A + + + +K+ +E VL
Sbjct: 250 LPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHAATSPADHAAYELLKEQIESVL 309
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 310 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLK 369
Query: 83 QYL 75
+L
Sbjct: 370 DFL 372
[217][TOP]
>UniRef100_C0CZA7 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0CZA7_9CLOT
Length = 405
Score = 91.3 bits (225), Expect = 3e-17
Identities = 44/126 (34%), Positives = 77/126 (61%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLE 273
A G++ KR+ ++ T SLE +G + +AD ++ E+Q N ++++++
Sbjct: 279 AVGMTEKRVEELIQTSGDTVSLETPVGDEDGSSLGDFVADNAGDSTEDQAENVLLREEID 338
Query: 272 KVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQ 93
+L LN RE+QVI+ RFG+++GR +E+G V+RERIR IE+ A RKL+N R++
Sbjct: 339 SMLQGLNERERQVIKLRFGLENGRPLTLEEVGRQFNVTRERIRQIETAALRKLRNPVRSK 398
Query: 92 HLQQYL 75
++ +L
Sbjct: 399 KVRDFL 404
[218][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 91.3 bits (225), Expect = 3e-17
Identities = 47/123 (38%), Positives = 75/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ ++R+ +L + P SLE IG ++ + I D E +K+ L++VL
Sbjct: 259 MPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVL 318
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE++V+R RFGMDDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 319 DTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLR 378
Query: 83 QYL 75
YL
Sbjct: 379 DYL 381
[219][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
RepID=A5N6R2_CLOK5
Length = 354
Score = 90.9 bits (224), Expect = 4e-17
Identities = 47/123 (38%), Positives = 75/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ + ++ ++ + P SLE IG ++ + I D EA E +K+ L VL
Sbjct: 231 MPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVL 290
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 291 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 350
Query: 83 QYL 75
YL
Sbjct: 351 DYL 353
[220][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 90.9 bits (224), Expect = 4e-17
Identities = 46/123 (37%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ ++++ ++ + P SLE IG ++ + I D +A E +K+ L VL
Sbjct: 235 MPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVL 294
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 295 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 354
Query: 83 QYL 75
YL
Sbjct: 355 DYL 357
[221][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 90.9 bits (224), Expect = 4e-17
Identities = 45/124 (36%), Positives = 78/124 (62%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
+G+ ++++ +L + P SL+ +G ++ + I D EA +AE +I++ + D+
Sbjct: 194 SGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRH 253
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
VL +L+ RE+QVIR RFG+DDG+ + +IG++ G+SRER+R IE KL+N +R
Sbjct: 254 VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADR 313
Query: 89 LQQY 78
L+ Y
Sbjct: 314 LRSY 317
[222][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 90.9 bits (224), Expect = 4e-17
Identities = 47/123 (38%), Positives = 75/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ + ++ ++ + P SLE IG ++ + I D EA E +K+ L VL
Sbjct: 245 MPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 364
Query: 83 QYL 75
YL
Sbjct: 365 DYL 367
[223][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 90.9 bits (224), Expect = 4e-17
Identities = 46/123 (37%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ ++++ ++ + P SLE IG ++ + I D +A E +K+ L VL
Sbjct: 235 MPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVL 294
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 295 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 354
Query: 83 QYL 75
YL
Sbjct: 355 DYL 357
[224][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 90.9 bits (224), Expect = 4e-17
Identities = 47/123 (38%), Positives = 75/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ + ++ ++ + P SLE IG ++ + I D EA E +K+ L VL
Sbjct: 238 MPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVL 297
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 298 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 357
Query: 83 QYL 75
YL
Sbjct: 358 DYL 360
[225][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 90.9 bits (224), Expect = 4e-17
Identities = 47/123 (38%), Positives = 75/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ + ++ ++ + P SLE IG ++ + I D EA E +K+ L VL
Sbjct: 245 MPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 364
Query: 83 QYL 75
YL
Sbjct: 365 DYL 367
[226][TOP]
>UniRef100_C4V564 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V564_9FIRM
Length = 383
Score = 90.9 bits (224), Expect = 4e-17
Identities = 46/124 (37%), Positives = 77/124 (62%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+++ R+ ++ + P SLE IG ++ + I D A E +++ LE+V
Sbjct: 259 GITVARVHEIMKIAQEPVSLETPIGEEEDSHLGDFIEDEAAPAPAEAASFMLLREQLEEV 318
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
L++L REK V+R RFG++DGR + +E+G+ GV+RERIR IE+ A RKL++ R++ L
Sbjct: 319 LETLTDREKNVLRLRFGLEDGRSRTLEEVGQSFGVTRERIRQIEAKALRKLRHPSRSKVL 378
Query: 86 QQYL 75
+ +L
Sbjct: 379 RDFL 382
[227][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
RepID=A5I618_CLOBH
Length = 361
Score = 90.9 bits (224), Expect = 4e-17
Identities = 47/123 (38%), Positives = 75/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ + ++ ++ + P SLE IG ++ + I D EA E +K+ L VL
Sbjct: 238 MPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVL 297
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 298 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 357
Query: 83 QYL 75
YL
Sbjct: 358 DYL 360
[228][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 90.9 bits (224), Expect = 4e-17
Identities = 47/123 (38%), Positives = 75/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ + ++ ++ + P SLE IG ++ + I D EA E +K+ L VL
Sbjct: 245 MPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVL 304
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 305 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 364
Query: 83 QYL 75
YL
Sbjct: 365 DYL 367
[229][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 90.5 bits (223), Expect = 5e-17
Identities = 46/123 (37%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
LS ++ ++ + P SLE IG + + I D +A + + +K+ LE VL
Sbjct: 244 LSTDKVREIMKISQEPVSLETPIGEENDSNLGDFIEDQDALAPADAASYELLKEQLEHVL 303
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG++DGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 304 DTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLK 363
Query: 83 QYL 75
+L
Sbjct: 364 DFL 366
[230][TOP]
>UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens
RepID=Q0SRH3_CLOPS
Length = 366
Score = 90.5 bits (223), Expect = 5e-17
Identities = 47/123 (38%), Positives = 75/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ + ++ +L + P SLE IG ++ + I D +A E +K+ L VL
Sbjct: 243 MPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTMLKEQLINVL 302
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 303 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 362
Query: 83 QYL 75
YL
Sbjct: 363 DYL 365
[231][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
RepID=A4TCQ2_MYCGI
Length = 329
Score = 90.5 bits (223), Expect = 5e-17
Identities = 45/124 (36%), Positives = 78/124 (62%)
Frame = -1
Query: 449 TGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEK 270
+G+ +++++ +L + P SL+ +G ++ + I D EA +AE +I++ + D+
Sbjct: 204 SGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRY 263
Query: 269 VLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
VL +L+ RE+QVIR RFG+DDG+ + +IG++ G+SRER+R IE KL+N R
Sbjct: 264 VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGDRADR 323
Query: 89 LQQY 78
L+ Y
Sbjct: 324 LRSY 327
[232][TOP]
>UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens
RepID=Q0TNV3_CLOP1
Length = 366
Score = 90.5 bits (223), Expect = 5e-17
Identities = 47/123 (38%), Positives = 75/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ + ++ +L + P SLE IG ++ + I D +A E +K+ L VL
Sbjct: 243 MPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTMLKEQLINVL 302
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 303 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 362
Query: 83 QYL 75
YL
Sbjct: 363 DYL 365
[233][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium papyrosolvens DSM 2782
RepID=C7IFS3_9CLOT
Length = 359
Score = 90.5 bits (223), Expect = 5e-17
Identities = 47/124 (37%), Positives = 76/124 (61%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+S+ ++ ++ + P SLE IG ++ + I D +A E +K+ L V
Sbjct: 235 GMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTLLKEQLIDV 294
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
LD+L RE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L
Sbjct: 295 LDTLTAREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKL 354
Query: 86 QQYL 75
+ YL
Sbjct: 355 KDYL 358
[234][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 90.5 bits (223), Expect = 5e-17
Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 9/135 (6%)
Frame = -1
Query: 452 ATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIAD---------PEAETAEEQLI 300
A ++++++ + P SL Q + N N + + D PE ET + L
Sbjct: 456 AMEMTVEKIKQIKKASLVPISLSQTVN-NSNGEDKRTVEDTLIDDYTEHPEGETGKVLL- 513
Query: 299 NQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFR 120
K+DLE VL++LNPRE+ V+R R+G+DDGR+K +EIG + V+RERIR IE+ A R
Sbjct: 514 ----KEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALR 569
Query: 119 KLKNQKRNQHLQQYL 75
KL+ RN L++YL
Sbjct: 570 KLRQPSRNGILREYL 584
[235][TOP]
>UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM
Length = 432
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/123 (36%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ ++ +L + P SLE IG + + I D EA + + + +++ LE VL
Sbjct: 305 LTADKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYEMLREQLESVL 364
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG++DGR + +E+G + GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 365 DTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 424
Query: 83 QYL 75
++
Sbjct: 425 DFM 427
[236][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
Eklund 17B RepID=B2TMC7_CLOBB
Length = 374
Score = 90.1 bits (222), Expect = 7e-17
Identities = 48/123 (39%), Positives = 74/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L + ++ + + P SLE IG ++ + I D EA E +K+ L VL
Sbjct: 251 LPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVL 310
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 311 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 370
Query: 83 QYL 75
YL
Sbjct: 371 DYL 373
[237][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
8052 RepID=A6LRQ7_CLOB8
Length = 376
Score = 90.1 bits (222), Expect = 7e-17
Identities = 48/123 (39%), Positives = 74/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L + ++ + + P SLE IG ++ + I D EA E +K+ L VL
Sbjct: 253 LPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVL 312
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 313 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 372
Query: 83 QYL 75
YL
Sbjct: 373 DYL 375
[238][TOP]
>UniRef100_Q4HEV2 RNA polymerase sigma factor n=1 Tax=Campylobacter coli RM2228
RepID=Q4HEV2_CAMCO
Length = 621
Score = 90.1 bits (222), Expect = 7e-17
Identities = 50/125 (40%), Positives = 77/125 (61%), Gaps = 1/125 (0%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
GLS+ ++ V+ K P SLE IG + K + + D + + + ++ +K+ +++V
Sbjct: 493 GLSVDKVKQVIKITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEV 552
Query: 266 LDSLNPREKQVIRWRFG-MDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD LN REK VIR RFG MDD + +EIG+ L V+RER+R IES A +KLK+ K +
Sbjct: 553 LDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRK 612
Query: 89 LQQYL 75
L+ Y+
Sbjct: 613 LKNYI 617
[239][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
Length = 357
Score = 90.1 bits (222), Expect = 7e-17
Identities = 46/124 (37%), Positives = 76/124 (61%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+ +++ ++ + P SLE IG ++ + I D +A E +K+ L V
Sbjct: 233 GMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTMLKEQLMDV 292
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
LD+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L
Sbjct: 293 LDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKL 352
Query: 86 QQYL 75
+ +L
Sbjct: 353 KDFL 356
[240][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PMA8_9THEO
Length = 357
Score = 90.1 bits (222), Expect = 7e-17
Identities = 46/124 (37%), Positives = 76/124 (61%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+ +++ ++ + P SLE IG ++ + I D +A E +K+ L V
Sbjct: 233 GMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTMLKEQLMDV 292
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
LD+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L
Sbjct: 293 LDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKL 352
Query: 86 QQYL 75
+ +L
Sbjct: 353 KDFL 356
[241][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
RepID=B2V2K8_CLOBA
Length = 374
Score = 90.1 bits (222), Expect = 7e-17
Identities = 48/123 (39%), Positives = 74/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L + ++ + + P SLE IG ++ + I D EA E +K+ L VL
Sbjct: 251 LPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVL 310
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 311 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 370
Query: 83 QYL 75
YL
Sbjct: 371 DYL 373
[242][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
RepID=B0K6Y0_THEPX
Length = 357
Score = 90.1 bits (222), Expect = 7e-17
Identities = 46/124 (37%), Positives = 76/124 (61%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
G+ +++ ++ + P SLE IG ++ + I D +A E +K+ L V
Sbjct: 233 GMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFTMLKEQLMDV 292
Query: 266 LDSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHL 87
LD+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L
Sbjct: 293 LDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKL 352
Query: 86 QQYL 75
+ +L
Sbjct: 353 KDFL 356
[243][TOP]
>UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC
Length = 432
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/123 (36%), Positives = 76/123 (61%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L+ ++ +L + P SLE IG + + I D EA + + + +++ LE VL
Sbjct: 305 LTADKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYEMLREQLESVL 364
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG++DGR + +E+G + GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 365 DTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 424
Query: 83 QYL 75
++
Sbjct: 425 DFM 427
[244][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
RepID=B1QWY9_CLOBU
Length = 369
Score = 90.1 bits (222), Expect = 7e-17
Identities = 48/123 (39%), Positives = 74/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L + ++ + + P SLE IG ++ + I D EA E +K+ L VL
Sbjct: 246 LPVDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVL 305
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 306 DTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 365
Query: 83 QYL 75
YL
Sbjct: 366 DYL 368
[245][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 90.1 bits (222), Expect = 7e-17
Identities = 45/123 (36%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ + ++ ++ + P SLE IG ++ + I D EA + + +K+ L K+L
Sbjct: 255 MPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPADAAAFRMLKEQLLKIL 314
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
++L PRE++V+R RFG+DDGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 315 NTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 374
Query: 83 QYL 75
YL
Sbjct: 375 DYL 377
[246][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 89.7 bits (221), Expect = 9e-17
Identities = 44/123 (35%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+S +++ + + P SLE +G + + I D +A + + +K+ LE+VL
Sbjct: 193 ISPEKVREIQKVSQEPVSLETPVGEESDSNLGDFIEDQDALAPADAAAFELLKEQLEEVL 252
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG++DGR + +E+G++ GV+RERIR IE+ A RKL++ R++ L+
Sbjct: 253 DTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKRLK 312
Query: 83 QYL 75
+L
Sbjct: 313 DFL 315
[247][TOP]
>UniRef100_Q1G9X1 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842 RepID=Q1G9X1_LACDA
Length = 372
Score = 89.7 bits (221), Expect = 9e-17
Identities = 45/123 (36%), Positives = 74/123 (60%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
L +K++ L + P SLE IG + + I D + + E+ ++ ++ L +VL
Sbjct: 249 LPVKKVREALKVAQEPVSLETPIGEEDDSHLGDFIEDKDTTSPEQHAASEMLRDQLAEVL 308
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
D+L RE+ V+R RFG+DDG + +E+G + GV+RERIR IE+ A RKL++ R+ L+
Sbjct: 309 DTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLR 368
Query: 83 QYL 75
+L
Sbjct: 369 DFL 371
[248][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 89.7 bits (221), Expect = 9e-17
Identities = 46/123 (37%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ ++++ +L + P SLE IG ++ + I D +A E +K+ L +VL
Sbjct: 294 MPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVL 353
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
DSLN REK+V++ RFG++DGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 354 DSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 413
Query: 83 QYL 75
+L
Sbjct: 414 DFL 416
[249][TOP]
>UniRef100_A7I1A4 RNA polymerase sigma factor n=1 Tax=Campylobacter hominis ATCC
BAA-381 RepID=A7I1A4_CAMHC
Length = 624
Score = 89.7 bits (221), Expect = 9e-17
Identities = 49/127 (38%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = -1
Query: 446 GLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKV 267
GLS+ ++ V+ K P SLE +G + K + + D + +Q++ +K+ ++KV
Sbjct: 498 GLSIDKIKQVIKITKEPISLEAPVGNEDDGKFGDFVEDKGTISPIDQILKNDLKEQIDKV 557
Query: 266 LDSLNPREKQVIRWRFG-MDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQH 90
LD LN RE+ VIR RFG +DD + +EIG+ L V+RER+R IE+ A +KLK+ K +
Sbjct: 558 LDQLNERERAVIRMRFGLLDDESDRTLEEIGKELSVTRERVRQIEASAIKKLKHPKVGRD 617
Query: 89 LQQYLVS 69
L++Y+ S
Sbjct: 618 LKKYIES 624
[250][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 89.7 bits (221), Expect = 9e-17
Identities = 46/123 (37%), Positives = 77/123 (62%)
Frame = -1
Query: 443 LSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLINQFMKKDLEKVL 264
+ ++++ +L + P SLE IG ++ + I D +A E +K+ L +VL
Sbjct: 288 MPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVL 347
Query: 263 DSLNPREKQVIRWRFGMDDGRMKXXQEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQ 84
DSLN REK+V++ RFG++DGR + +E+G+ V+RERIR IE+ A RKL++ R++ L+
Sbjct: 348 DSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLK 407
Query: 83 QYL 75
+L
Sbjct: 408 DFL 410