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[1][TOP]
>UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like n=1 Tax=Arabidopsis
thaliana RepID=Q9FG26_ARATH
Length = 676
Score = 68.9 bits (167), Expect = 2e-10
Identities = 36/86 (41%), Positives = 49/86 (56%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+GVCS AELWG+ +GL A RG+ ++ +E DSA + FL G HP LVR H
Sbjct: 552 IGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCH 611
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ ++ + HVYRE N +AD A
Sbjct: 612 GFISKDWIVRITHVYREANRLADGLA 637
[2][TOP]
>UniRef100_Q9ZUY7 Putative reverse transcriptase n=1 Tax=Arabidopsis thaliana
RepID=Q9ZUY7_ARATH
Length = 314
Score = 66.6 bits (161), Expect = 8e-10
Identities = 36/86 (41%), Positives = 48/86 (55%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+GVCS AELWG+ +GL A R +++ IE DS + FL G VHP LVR H
Sbjct: 190 IGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCH 249
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ ++ + HVYRE N +AD A
Sbjct: 250 DFISRDWRVRISHVYREANRLADGLA 275
[3][TOP]
>UniRef100_Q9LQJ0 F28G4.15 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LQJ0_ARATH
Length = 272
Score = 66.6 bits (161), Expect = 8e-10
Identities = 35/86 (40%), Positives = 48/86 (55%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G+CS AELWG +GL A RG +++ +E DS + FL G HP LVR H
Sbjct: 148 IGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCH 207
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
L+ ++ + HVYRE N +AD A
Sbjct: 208 GLLSKDWSVRISHVYREANRLADGLA 233
[4][TOP]
>UniRef100_Q9LNS0 F1L3.4 n=1 Tax=Arabidopsis thaliana RepID=Q9LNS0_ARATH
Length = 253
Score = 66.6 bits (161), Expect = 8e-10
Identities = 35/86 (40%), Positives = 48/86 (55%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G+CS AELWG +GL A RG +++ +E DS + FL G HP LVR H
Sbjct: 129 IGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCH 188
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
L+ ++ + HVYRE N +AD A
Sbjct: 189 GLLSKDWSVRISHVYREANRLADGLA 214
[5][TOP]
>UniRef100_A0MEQ4 Putative uncharacterized protein (Fragment) n=1 Tax=Arabidopsis
thaliana RepID=A0MEQ4_ARATH
Length = 315
Score = 66.6 bits (161), Expect = 8e-10
Identities = 36/86 (41%), Positives = 48/86 (55%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+GVCS AELWG+ +GL A R +++ IE DS + FL G VHP LVR H
Sbjct: 190 IGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCH 249
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ ++ + HVYRE N +AD A
Sbjct: 250 DFISRDWRVRISHVYREANRLADGLA 275
[6][TOP]
>UniRef100_B9SG51 Putative uncharacterized protein n=1 Tax=Ricinus communis
RepID=B9SG51_RICCO
Length = 132
Score = 65.9 bits (159), Expect = 1e-09
Identities = 34/86 (39%), Positives = 44/86 (51%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G CSI A LWGL HGL A G K+L++ DS + + + PLV
Sbjct: 14 IGRCSITGAGLWGLYHGLTLAWKLGIRKLLVKVDSMCAVPLVTGEKDISSSYAPLVSGIR 73
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
++GQN + HVYRE NF AD A
Sbjct: 74 SMLGQNWQVSVSHVYREANFAADGLA 99
[7][TOP]
>UniRef100_B9HV70 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HV70_POPTR
Length = 245
Score = 65.9 bits (159), Expect = 1e-09
Identities = 33/90 (36%), Positives = 52/90 (57%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G+CS ++AELW + GL+ A RGF K+ +E+DS + +N V + ++ +
Sbjct: 120 IGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIK 179
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFAKNGL 195
++G+N + HVYRE N VAD A GL
Sbjct: 180 GMLGRNWEVTTYHVYREANCVADWLANYGL 209
[8][TOP]
>UniRef100_Q9SJZ8 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=Q9SJZ8_ARATH
Length = 321
Score = 65.5 bits (158), Expect = 2e-09
Identities = 34/86 (39%), Positives = 47/86 (54%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+GVCS AELWG+ +GL A GRG ++ +E DS + FL G HP L+R +
Sbjct: 197 IGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFLLRLCY 256
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ + + HVYRE N +AD A
Sbjct: 257 DFLSKGWIVRISHVYREANRLADGLA 282
[9][TOP]
>UniRef100_Q9FMM8 Non-LTR retroelement reverse transcriptase-like protein n=1
Tax=Arabidopsis thaliana RepID=Q9FMM8_ARATH
Length = 308
Score = 65.1 bits (157), Expect = 2e-09
Identities = 33/86 (38%), Positives = 48/86 (55%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G CS HAELWG+ +GL FA + ++ +E DS + FL G HP LVR H
Sbjct: 184 IGRCSAQHAELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCH 243
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ + ++ + +VYRE N +AD A
Sbjct: 244 NFLQKDWLVRIVYVYREANCLADGLA 269
[10][TOP]
>UniRef100_Q1PEZ4 Putative uncharacterized protein n=1 Tax=Arabidopsis thaliana
RepID=Q1PEZ4_ARATH
Length = 314
Score = 63.9 bits (154), Expect = 5e-09
Identities = 35/86 (40%), Positives = 47/86 (54%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+GVCS AELWG+ +GL A R +++ IE DS + FL VHP LVR H
Sbjct: 190 IGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIXINEVHPLSFLVRLCH 249
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ ++ + HVYRE N +AD A
Sbjct: 250 DFISRDWRVRISHVYREANRLADGLA 275
[11][TOP]
>UniRef100_B9HFN7 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HFN7_POPTR
Length = 245
Score = 63.9 bits (154), Expect = 5e-09
Identities = 32/90 (35%), Positives = 52/90 (57%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G+CS ++AELW + GL+ A RGF K+ +E+DS + +N V + ++ +
Sbjct: 120 IGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIK 179
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFAKNGL 195
++G++ + HVYRE N VAD A GL
Sbjct: 180 GMLGRDWEVTTYHVYREANCVADWLANYGL 209
[12][TOP]
>UniRef100_Q9SI81 F23N19.5 n=1 Tax=Arabidopsis thaliana RepID=Q9SI81_ARATH
Length = 233
Score = 62.0 bits (149), Expect = 2e-08
Identities = 33/86 (38%), Positives = 46/86 (53%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G C AELWG+ +GL A RG +++ +E DS + FL G HP LVR H
Sbjct: 109 IGRCLAPLAELWGVYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCH 168
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ ++ + HVYRE N +AD A
Sbjct: 169 GFLSRDWIVRIGHVYREANRLADGLA 194
[13][TOP]
>UniRef100_B9IKN0 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IKN0_POPTR
Length = 245
Score = 61.6 bits (148), Expect = 3e-08
Identities = 31/90 (34%), Positives = 51/90 (56%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+ +CS ++AELW + GL+ A RGF K+ +E+DS + +N V + ++ +
Sbjct: 120 IDICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGLINGDSVRVDRNYNIIMQIK 179
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFAKNGL 195
++G++ + HVYRE N VAD A GL
Sbjct: 180 DMLGRDWEVTTYHVYREANCVADWLANYGL 209
[14][TOP]
>UniRef100_P0C2F6 Putative ribonuclease H protein At1g65750 n=1 Tax=Arabidopsis
thaliana RepID=RNHX1_ARATH
Length = 620
Score = 61.2 bits (147), Expect = 3e-08
Identities = 33/86 (38%), Positives = 46/86 (53%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G CS AELWG+ +GL FA + ++ +E DS + FL G HP LVR H
Sbjct: 496 IGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCH 555
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ ++ + HVYRE N +AD A
Sbjct: 556 GFLQKDWLVRIVHVYREANRLADGLA 581
[15][TOP]
>UniRef100_Q9FXC8 F12A21.24 n=1 Tax=Arabidopsis thaliana RepID=Q9FXC8_ARATH
Length = 803
Score = 60.5 bits (145), Expect = 6e-08
Identities = 32/86 (37%), Positives = 46/86 (53%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G CS AELWG+ +G A + +++ +E DS + FL G HP LVR H
Sbjct: 679 IGRCSAPLAELWGVYYGFYLAWTKALTRVELEVDSELVVGFLKTGIGDQHPLSFLVRLCH 738
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
L+ ++ + HVYRE N +AD A
Sbjct: 739 GLLSKDWIVRITHVYREANRLADGLA 764
[16][TOP]
>UniRef100_Q9FWJ4 Putative uncharacterized protein F21N10.9 n=1 Tax=Arabidopsis
thaliana RepID=Q9FWJ4_ARATH
Length = 256
Score = 60.1 bits (144), Expect = 7e-08
Identities = 30/86 (34%), Positives = 46/86 (53%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G+CS AELWG+ +GL A + +++ +E DS + FL G HP L R +
Sbjct: 51 IGICSAPQAELWGVYYGLYIAWEKWVTRVELEVDSEIVVGFLKTGIGDSHPLSFLARLCY 110
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ ++ + HVYRE N +AD A
Sbjct: 111 GFISKDWIVRISHVYREANRLADGLA 136
[17][TOP]
>UniRef100_O80790 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=O80790_ARATH
Length = 970
Score = 58.2 bits (139), Expect = 3e-07
Identities = 31/86 (36%), Positives = 43/86 (50%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G C AELWG +GL A +GF ++ + DS + FL+ G HP LVR
Sbjct: 846 IGSCDAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVVGFLSTGISKAHPLSFLVRLCQ 905
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
++ + HVYRE N +AD A
Sbjct: 906 GFFTRDWLVRVSHVYREANRLADGLA 931
[18][TOP]
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=O82276_ARATH
Length = 1231
Score = 57.0 bits (136), Expect = 6e-07
Identities = 30/86 (34%), Positives = 44/86 (51%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G C+ AELWG +GL A +GF ++ ++ D + FL+ G HP LVR
Sbjct: 1107 IGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQ 1166
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
++ + HVYRE N +AD A
Sbjct: 1167 GFFTRDWLVRVSHVYREANRLADGLA 1192
[19][TOP]
>UniRef100_B2BXY8 Non-LTR retrotransposon transposase n=1 Tax=Arabidopsis cebennensis
RepID=B2BXY8_9BRAS
Length = 799
Score = 56.2 bits (134), Expect = 1e-06
Identities = 30/86 (34%), Positives = 45/86 (52%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G+CS AELW + +GL A R +++ +E DS + FL HP LVR +
Sbjct: 670 IGICSAPLAELWRVYYGLYIAWERKITRLEVEVDSELVVGFLTTWISDSHPLSFLVRLCY 729
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ ++ + HVYRE N +AD A
Sbjct: 730 GFISRDWIVRISHVYREANRLADGLA 755
[20][TOP]
>UniRef100_B2BXJ9 Putative uncharacterized protein n=1 Tax=Arabidopsis lyrata subsp.
lyrata RepID=B2BXJ9_ARALY
Length = 172
Score = 56.2 bits (134), Expect = 1e-06
Identities = 30/86 (34%), Positives = 46/86 (53%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G CS AELWG+ +GL A +++++E DS+ + FL G HP LVR +
Sbjct: 48 IGRCSAPLAELWGVYYGLYTAWEHRVTRLVLEVDSSLVVGFLTTGIGDSHPLSILVRLCY 107
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFA 207
+ ++ + HVYR+ N AD A
Sbjct: 108 GFIARDWIVRVTHVYRKANRFADGLA 133
[21][TOP]
>UniRef100_Q2HX37 LINE-type retrotransposon LIb DNA, complete sequence, Insertion at
the S14 site n=1 Tax=Ipomoea batatas RepID=Q2HX37_IPOBA
Length = 1366
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/89 (37%), Positives = 44/89 (49%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G + AELWGL GL A RGF+K++ E DS ++ L K PV LV++
Sbjct: 1244 IGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTPDASILVKDCK 1303
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFAKNG 198
L+ I H+ RE N AD A G
Sbjct: 1304 LLLDHFQEIKVTHILREGNQCADFLANLG 1332
[22][TOP]
>UniRef100_Q2HX35 LINE-type retrotransposon LIb DNA, complete sequence, Insertion at
the S11 site n=1 Tax=Ipomoea batatas RepID=Q2HX35_IPOBA
Length = 1898
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/89 (37%), Positives = 44/89 (49%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G + AELWGL GL A RGF+K++ E DS ++ L K PV LV++
Sbjct: 1776 IGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTPDASILVKDCK 1835
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFAKNG 198
L+ I H+ RE N AD A G
Sbjct: 1836 LLLDHFQEIKVTHILREGNQCADFLANLG 1864
[23][TOP]
>UniRef100_Q2HX34 LINE-type retrotransposon LIb DNA, complete sequence, Insertion at
the SCL6 site n=1 Tax=Ipomoea batatas RepID=Q2HX34_IPOBA
Length = 1366
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/89 (37%), Positives = 44/89 (49%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G + AELWGL GL A RGF+K++ E DS ++ L K PV LV++
Sbjct: 1244 IGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTPDASILVKDCK 1303
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFAKNG 198
L+ I H+ RE N AD A G
Sbjct: 1304 LLLDHFQEIKVTHILREGNQCADFLANLG 1332
[24][TOP]
>UniRef100_B9S4K7 Putative uncharacterized protein n=1 Tax=Ricinus communis
RepID=B9S4K7_RICCO
Length = 135
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+ VCS L E+W ++ L A GF KI++E DSA I+ KG C ++ E H
Sbjct: 11 ISVCSALEVEVWEALNVLILAWMMGFKKIILEVDSATAIQLCKKGNTTDRNCSSMMAEIH 70
Query: 284 HLVGQNCYIHWKHVYREVNFVAD 216
+ + ++ H+Y E N AD
Sbjct: 71 KCLDWDWDVNCVHIYHEANKYAD 93
[25][TOP]
>UniRef100_Q2PEU3 Putative uncharacterized protein n=1 Tax=Trifolium pratense
RepID=Q2PEU3_TRIPR
Length = 553
Score = 54.3 bits (129), Expect = 4e-06
Identities = 29/92 (31%), Positives = 46/92 (50%)
Frame = -2
Query: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFH 285
+G CS + AELWG+ GL +A GF+ + + DS ++ + G PLV+
Sbjct: 429 LGNCSAIIAELWGVAEGLSYARRLGFTAVELNVDSVVVVQAIKTGRFSSSVGLPLVKHIR 488
Query: 284 HLVGQNCYIHWKHVYREVNFVADSFAKNGLRI 189
++ + I +H YRE N AD+ A G +
Sbjct: 489 RMLDLDWEIKIEHAYRESNKCADAMANIGCHL 520