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[1][TOP]
>UniRef100_A7PD40 Chromosome chr17 scaffold_12, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PD40_VITVI
Length = 1127
Score = 202 bits (513), Expect = 2e-50
Identities = 93/137 (67%), Positives = 112/137 (81%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
AYD +LE +GFE FLE A HKEMYAEKM LM FYGAE+EDE+LTGNL+N+ YLQRDN
Sbjct: 977 AYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQRDN 1036
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSF 183
RR+T+MKDRILISVK LQ+EAKEW C+ H++Q MASAWYHVTYH + ++ +FLSF
Sbjct: 1037 RRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQHQKMASAWYHVTYHSTFSSQTPNFLSF 1096
Query: 182 PWIVGDILLHIKSVNSK 132
PWIVG++LL IKS NS+
Sbjct: 1097 PWIVGEVLLVIKSANSR 1113
[2][TOP]
>UniRef100_B9IEP4 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9IEP4_POPTR
Length = 1110
Score = 199 bits (507), Expect = 8e-50
Identities = 91/136 (66%), Positives = 114/136 (83%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE GFE FL AS +KE Y EKM+ LM +YGA+TEDE+LTGNL++R +YLQRDNR
Sbjct: 973 YDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQRDNR 1032
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFP 180
+Y D+KDRIL+S+K+L++EAKEWFE+ C E+Q MASAWYHVTYHP Y+HE + LSFP
Sbjct: 1033 KYGDVKDRILVSLKNLKKEAKEWFESSCNPTEHQCMASAWYHVTYHPTYFHERMNCLSFP 1092
Query: 179 WIVGDILLHIKSVNSK 132
WIVGDILL+IKS+NS+
Sbjct: 1093 WIVGDILLNIKSLNSR 1108
[3][TOP]
>UniRef100_B9RB56 RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis
RepID=B9RB56_RICCO
Length = 983
Score = 199 bits (506), Expect = 1e-49
Identities = 95/138 (68%), Positives = 110/138 (79%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE GFE F+E A SHK+MY EK++ LM +Y A+ EDE+LTGNLQN+A YLQRDNR
Sbjct: 828 YDHDLEVKGFEEFVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNR 887
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFP 180
RY D KDRILISVK LQ+EAKEWFE+ CQ E Q +ASAWYHVTYHP Y+ E + LSFP
Sbjct: 888 RYGDTKDRILISVKSLQKEAKEWFESCCQAKEKQRLASAWYHVTYHPSYFQEGITCLSFP 947
Query: 179 WIVGDILLHIKSVNSKVL 126
WIV DILL+IKS NSK L
Sbjct: 948 WIVADILLNIKSANSKNL 965
[4][TOP]
>UniRef100_Q647I4 Putative RNA-dependent RNA polymerase RdRP2 n=1 Tax=Nicotiana
benthamiana RepID=Q647I4_NICBE
Length = 1120
Score = 174 bits (440), Expect = 5e-42
Identities = 78/140 (55%), Positives = 107/140 (76%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
AYD L +G+EAF+ETA +HKE Y ++M +L+ +YGAE E E+LTGNL+ ++ YLQRDN
Sbjct: 980 AYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEKEVEILTGNLRQKSVYLQRDN 1039
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSF 183
RRY ++KDRIL+S K LQ+E K WF C++ E++ +ASAWYHVTYHP Y S++ L F
Sbjct: 1040 RRYFELKDRILVSAKSLQKEVKGWFTGCCKEDEHKKLASAWYHVTYHPSYCEGSANCLGF 1099
Query: 182 PWIVGDILLHIKSVNSKVLS 123
PW+VGDILL IK N++ ++
Sbjct: 1100 PWVVGDILLDIKLHNTRKIT 1119
[5][TOP]
>UniRef100_O82504 F2P3.11 protein n=1 Tax=Arabidopsis thaliana RepID=O82504_ARATH
Length = 1133
Score = 172 bits (435), Expect = 2e-41
Identities = 79/138 (57%), Positives = 107/138 (77%), Gaps = 1/138 (0%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
AYD+ LE GFE+F+ETA +H++MY EK+T+LM +YGA E+E+LTG L+ + YL RDN
Sbjct: 982 AYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDN 1041
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQ-QHEYQAMASAWYHVTYHPKYYHESSSFLS 186
RRY DMKDRI +SVKDL +EA WFE C+ + + + +ASAWY+VTY+P + E +FLS
Sbjct: 1042 RRYGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKKLASAWYYVTYNPNHRDEKLTFLS 1101
Query: 185 FPWIVGDILLHIKSVNSK 132
FPWIVGD+LL IK+ N++
Sbjct: 1102 FPWIVGDVLLDIKAENAQ 1119
[6][TOP]
>UniRef100_Q19VG2 RNA-dependent RNA polymerase n=1 Tax=Zea mays RepID=Q19VG2_MAIZE
Length = 1127
Score = 138 bits (348), Expect = 2e-31
Identities = 68/132 (51%), Positives = 90/132 (68%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE GF+ FL+ A E YAE++ ALM +Y AE EDE+LTGN++N+ YL+RDN+
Sbjct: 978 YDPDLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAEREDEILTGNIRNKLVYLRRDNK 1037
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFP 180
RY +MKDRI+ +V L E + W A C++ + +ASAWYHVTYHP E F SFP
Sbjct: 1038 RYFEMKDRIIAAVDALHAEVRGWLRA-CKEDDASRVASAWYHVTYHPDRRGE-KRFWSFP 1095
Query: 179 WIVGDILLHIKS 144
WI+ D LL IK+
Sbjct: 1096 WIICDTLLAIKA 1107
[7][TOP]
>UniRef100_C4JBQ0 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C4JBQ0_MAIZE
Length = 525
Score = 138 bits (348), Expect = 2e-31
Identities = 68/132 (51%), Positives = 90/132 (68%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE GF+ FL+ A E YAE++ ALM +Y AE EDE+LTGN++N+ YL+RDN+
Sbjct: 376 YDPDLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAEREDEILTGNIRNKLVYLRRDNK 435
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFP 180
RY +MKDRI+ +V L E + W A C++ + +ASAWYHVTYHP E F SFP
Sbjct: 436 RYFEMKDRIIAAVDALHAEVRGWLRA-CKEDDASRVASAWYHVTYHPDRRGE-KRFWSFP 493
Query: 179 WIVGDILLHIKS 144
WI+ D LL IK+
Sbjct: 494 WIICDTLLAIKA 505
[8][TOP]
>UniRef100_B9FFL3 Putative uncharacterized protein n=2 Tax=Oryza sativa Japonica
Group RepID=B9FFL3_ORYSJ
Length = 335
Score = 135 bits (339), Expect = 2e-30
Identities = 66/132 (50%), Positives = 88/132 (66%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE G + FL+ A + E+Y EK+T LM +Y AE EDE+LTGN++N+ YL+RDN+
Sbjct: 181 YDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNK 240
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFP 180
RY +MKDRI+ +V L REA+ W + ++ + MASAWY VTYHP F SFP
Sbjct: 241 RYFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWYRVTYHPD-RRRGKRFWSFP 299
Query: 179 WIVGDILLHIKS 144
WI D LL IK+
Sbjct: 300 WIACDNLLAIKA 311
[9][TOP]
>UniRef100_C5YA80 Putative uncharacterized protein Sb06g019330 n=1 Tax=Sorghum bicolor
RepID=C5YA80_SORBI
Length = 1128
Score = 135 bits (339), Expect = 2e-30
Identities = 67/132 (50%), Positives = 89/132 (67%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE GF+ FL+TA E+YAEK+ LM +Y AE EDE+LTGN++N+ YL+RDN+
Sbjct: 979 YDPDLEVAGFDKFLDTAEEQYEVYAEKLGTLMTYYSAEHEDEILTGNIRNKLVYLRRDNK 1038
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFP 180
RY +MKDRI+ +V L E + W A ++ + +ASAWYHVTYHP E F SFP
Sbjct: 1039 RYFEMKDRIIAAVDALHAEVRGWLRAR-KEDDASKLASAWYHVTYHPDRRGE-KRFWSFP 1096
Query: 179 WIVGDILLHIKS 144
W+ D LL IK+
Sbjct: 1097 WVACDTLLAIKA 1108
[10][TOP]
>UniRef100_Q7XM31 Probable RNA-dependent RNA polymerase 2 n=1 Tax=Oryza sativa Japonica
Group RepID=RDR2_ORYSJ
Length = 1136
Score = 135 bits (339), Expect = 2e-30
Identities = 66/132 (50%), Positives = 88/132 (66%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE G + FL+ A + E+Y EK+T LM +Y AE EDE+LTGN++N+ YL+RDN+
Sbjct: 982 YDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNK 1041
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFP 180
RY +MKDRI+ +V L REA+ W + ++ + MASAWY VTYHP F SFP
Sbjct: 1042 RYFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWYRVTYHPD-RRRGKRFWSFP 1100
Query: 179 WIVGDILLHIKS 144
WI D LL IK+
Sbjct: 1101 WIACDNLLAIKA 1112
[11][TOP]
>UniRef100_A2XUF4 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XUF4_ORYSI
Length = 1136
Score = 134 bits (338), Expect = 3e-30
Identities = 66/132 (50%), Positives = 88/132 (66%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE G + FL+ A + E+Y EK+T LM +Y AE EDE+LTGN++N+ YL+RDN+
Sbjct: 982 YDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAEHEDEILTGNIRNKMLYLKRDNK 1041
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFP 180
RY +MKDRI+ +V L REA+ W + ++ + MASAWY VTYHP F SFP
Sbjct: 1042 RYFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWYRVTYHPD-RRRGKRFWSFP 1100
Query: 179 WIVGDILLHIKS 144
WI D LL IK+
Sbjct: 1101 WIACDNLLAIKA 1112
[12][TOP]
>UniRef100_A7P3W5 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W5_VITVI
Length = 1121
Score = 98.6 bits (244), Expect = 3e-19
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E GFE ++ A +K Y K+ LM +YG +TE E+L+G++ + R
Sbjct: 959 SYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRK 1018
Query: 362 RRYTDMKDRILISVKDLQREAKEWF-----EADCQQHEYQAMASAWYHVTYHPKY---YH 207
+ I ++VK L++EA+ WF E D + + A ASAWYHVTYHP Y Y+
Sbjct: 1019 D-----AEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYN 1073
Query: 206 ES---SSFLSFPWIVGDILLHIK 147
E FLSFPW V D L+H K
Sbjct: 1074 EGMDRDHFLSFPWCVYDKLIHTK 1096
[13][TOP]
>UniRef100_A5AM83 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5AM83_VITVI
Length = 654
Score = 98.6 bits (244), Expect = 3e-19
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E GFE ++ A +K Y K+ LM +YG +TE E+L+G++ + R
Sbjct: 492 SYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRK 551
Query: 362 RRYTDMKDRILISVKDLQREAKEWF-----EADCQQHEYQAMASAWYHVTYHPKY---YH 207
+ I ++VK L++EA+ WF E D + + A ASAWYHVTYHP Y Y+
Sbjct: 552 D-----AEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYN 606
Query: 206 ES---SSFLSFPWIVGDILLHIK 147
E FLSFPW V D L+H K
Sbjct: 607 EGMDRDHFLSFPWCVYDKLIHTK 629
[14][TOP]
>UniRef100_Q6L3W8 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3W8_SOLDE
Length = 1139
Score = 97.4 bits (241), Expect = 6e-19
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 9/149 (6%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD++LE +GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 981 SYDVDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRK 1040
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ES 201
+ I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ +
Sbjct: 1041 D-----AEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKR 1095
Query: 200 SSFLSFPWIVGDILLHI---KSVNSKVLS 123
F+SFPW V D L+ I K++N VL+
Sbjct: 1096 DHFISFPWCVYDQLIQIKKEKALNRPVLN 1124
[15][TOP]
>UniRef100_Q0KIK9 RNA-directed RNA polymerase, putative n=1 Tax=Solanum tuberosum
RepID=Q0KIK9_SOLTU
Length = 1050
Score = 97.4 bits (241), Expect = 6e-19
Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 6/143 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +LE +GFE +++ A +K Y K+ LM++YG +TE E+L+G + + R
Sbjct: 892 SYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKTSKTFDRRK 951
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ES 201
+ I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ +
Sbjct: 952 D-----AEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKR 1006
Query: 200 SSFLSFPWIVGDILLHIKSVNSK 132
F+SFPW V D L+ IK ++
Sbjct: 1007 DHFISFPWCVYDQLIQIKKEKAR 1029
[16][TOP]
>UniRef100_B9HJH7 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH7_POPTR
Length = 1133
Score = 97.4 bits (241), Expect = 6e-19
Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 13/148 (8%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD ++E +GFE +++ A +K Y K+ LM++YG +TE ELL+G+ + ++
Sbjct: 970 YDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGS-------FMKMSK 1022
Query: 359 RYTDMKD--RILISVKDLQREAKEWFE-----ADCQQHEYQAMASAWYHVTYHPKY---Y 210
+T +D I ++V+ L++EA+ WF D Q + A ASAWYHVTYH Y Y
Sbjct: 1023 SFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCY 1082
Query: 209 HESSS---FLSFPWIVGDILLHIKSVNS 135
+E + FLSFPW V D L+ IK NS
Sbjct: 1083 NEGMNRDHFLSFPWCVYDKLIQIKRRNS 1110
[17][TOP]
>UniRef100_B3SND7 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B3SND7_GOSHI
Length = 1110
Score = 97.4 bits (241), Expect = 6e-19
Identities = 58/150 (38%), Positives = 85/150 (56%), Gaps = 13/150 (8%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD ++E GFE +++ A HK Y K+ LM +YG +TE E+L G + + +R
Sbjct: 948 YDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGG-------IMKMSR 1000
Query: 359 RYTDMKD--RILISVKDLQREAKEWF-----EADCQQHEYQAMASAWYHVTYHPKY---Y 210
+T +D I ++V+ L++EA+ WF E D + + A ASAWY+VTYHP Y Y
Sbjct: 1001 SFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQY 1060
Query: 209 HESSS---FLSFPWIVGDILLHIKSVNSKV 129
+E + FLSFPW V D L+ IK + V
Sbjct: 1061 NEGMNRDHFLSFPWCVYDKLIQIKKEKAAV 1090
[18][TOP]
>UniRef100_Q0KIR2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum demissum
RepID=Q0KIR2_SOLDE
Length = 963
Score = 97.1 bits (240), Expect = 7e-19
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +LE +GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 805 SYDADLEVDGFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRK 864
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ES 201
+ I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ +
Sbjct: 865 D-----AEAISIAVRALRKEARTWFKRHNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKR 919
Query: 200 SSFLSFPWIVGDILLHIKSVNSK 132
F+SFPW V D L+ IK ++
Sbjct: 920 DHFISFPWCVYDQLIQIKKEKAR 942
[19][TOP]
>UniRef100_Q6L447 RNA-directed RNA polymerase-like, putative n=1 Tax=Solanum demissum
RepID=Q6L447_SOLDE
Length = 1137
Score = 96.7 bits (239), Expect = 1e-18
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +LE +GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 979 SYDTDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRK 1038
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ES 201
+ I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ +
Sbjct: 1039 D-----AEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKR 1093
Query: 200 SSFLSFPWIVGDILLHIKSVNSK 132
F+SFPW V D L+ IK ++
Sbjct: 1094 DHFISFPWCVYDQLIQIKKEKAR 1116
[20][TOP]
>UniRef100_Q6L3P3 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P3_SOLDE
Length = 1021
Score = 96.7 bits (239), Expect = 1e-18
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +LE +GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 863 SYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRK 922
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ES 201
+ I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ +
Sbjct: 923 D-----AEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKR 977
Query: 200 SSFLSFPWIVGDILLHIKSVNSK 132
F+SFPW V D L+ IK ++
Sbjct: 978 DHFISFPWCVYDQLIQIKKEKAR 1000
[21][TOP]
>UniRef100_Q6L3V2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum demissum
RepID=Q6L3V2_SOLDE
Length = 963
Score = 96.3 bits (238), Expect = 1e-18
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +LE +GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 805 SYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRK 864
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ES 201
+ I ++V+ L++EA+ WF+ + ASAWYHVTYHP Y+ +
Sbjct: 865 D-----AEAISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKR 919
Query: 200 SSFLSFPWIVGDILLHIKSVNSK 132
F+SFPW V D L+ IK ++
Sbjct: 920 DHFISFPWCVYDQLIQIKKEKAR 942
[22][TOP]
>UniRef100_Q6L3P6 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum
RepID=Q6L3P6_SOLDE
Length = 1180
Score = 96.3 bits (238), Expect = 1e-18
Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 9/149 (6%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +LE +GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 1022 SYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRK 1081
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ES 201
+ I ++V+ L++EA+ WF+ + ASAWYHVTYHP Y+ +
Sbjct: 1082 D-----AEAISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKR 1136
Query: 200 SSFLSFPWIVGDILLHI---KSVNSKVLS 123
F+SFPW V D L+ I K++N VL+
Sbjct: 1137 DHFISFPWCVYDQLIQIKKEKALNRPVLN 1165
[23][TOP]
>UniRef100_A4UV17 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV17_SOLTU
Length = 1115
Score = 96.3 bits (238), Expect = 1e-18
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +LE +GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 957 SYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRK 1016
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ES 201
+ I ++V+ L++EA+ WF+ + ASAWYHVTYHP Y+ +
Sbjct: 1017 D-----AEAISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKR 1071
Query: 200 SSFLSFPWIVGDILLHIKSVNSK 132
F+SFPW V D L+ IK ++
Sbjct: 1072 DHFISFPWCVYDQLIQIKKEKAR 1094
[24][TOP]
>UniRef100_Q9ZR58 RNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum
RepID=Q9ZR58_SOLLC
Length = 1114
Score = 95.5 bits (236), Expect = 2e-18
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 6/138 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E +GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 956 SYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRK 1015
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ES 201
+ I ++V+ L++EA+ WF+ + ASAWYHVTYHP Y+ +
Sbjct: 1016 D-----AEAISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKR 1070
Query: 200 SSFLSFPWIVGDILLHIK 147
+ F+SFPW V D L+ IK
Sbjct: 1071 AHFISFPWCVYDQLIQIK 1088
[25][TOP]
>UniRef100_C1I213 RNA-dependent RNA polymerase n=1 Tax=Nicotiana glutinosa
RepID=C1I213_NICGU
Length = 1117
Score = 94.7 bits (234), Expect = 4e-18
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++ NGFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 959 SYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRK 1018
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES--- 201
D I ++V+ L++EA+ WF+ + A ASAWYHVTYH Y Y+E
Sbjct: 1019 DA-----DAIGVAVRSLRKEARTWFKRRSDIDDMLAKASAWYHVTYHHTYWGFYNEGLKR 1073
Query: 200 SSFLSFPWIVGDILLHIKSVNSK 132
F+SFPW + D L+ IK ++
Sbjct: 1074 DHFISFPWCIYDQLIQIKKAKAR 1096
[26][TOP]
>UniRef100_Q9ZRX3 RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida
RepID=Q9ZRX3_PETHY
Length = 775
Score = 93.2 bits (230), Expect = 1e-17
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 6/132 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +LE +GFE +++ A +K Y +K+ LM +YG +TE E L+G + + D
Sbjct: 649 SYDTDLEVDGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASKTF--DR 706
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES--- 201
RR + I ++V+ L++EA+ WF+ + A ASAWYHV YHP Y Y+E
Sbjct: 707 RRDA---EAIGVAVRSLRKEARTWFKRRSDIDDLLAKASAWYHVAYHPTYWGCYNEGLKR 763
Query: 200 SSFLSFPWIVGD 165
F+SFPW V D
Sbjct: 764 DHFISFPWCVYD 775
[27][TOP]
>UniRef100_A5ATA5 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5ATA5_VITVI
Length = 697
Score = 93.2 bits (230), Expect = 1e-17
Identities = 55/143 (38%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E +GFE ++ A +K Y K+ +LM YG TE E+L+G+L + D
Sbjct: 501 SYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCYGIRTESEILSGSLMKMSKSF--DK 558
Query: 362 RRYTDMKDRILISVKDLQREAKEWFE-----ADCQQHEYQAMASAWYHVTYHPKY---YH 207
R+ + I ++V+ L++EA+ WF + A+ASAWYHVTYHP Y Y+
Sbjct: 559 RKDA---EAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYN 615
Query: 206 ES---SSFLSFPWIVGDILLHIK 147
E FLSFPW V D L+ IK
Sbjct: 616 EGMYHDHFLSFPWCVYDKLIQIK 638
[28][TOP]
>UniRef100_A9T7J6 RNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9T7J6_PHYPA
Length = 843
Score = 92.0 bits (227), Expect = 2e-17
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 9/146 (6%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
A+D + G+E F++ A HK Y K+ LM YG ETE E ++G + N A ++
Sbjct: 699 AFDPVMVITGYEEFIDMAKFHKNEYDRKLIGLMNQYGIETEAEAVSGYMLNLA---RQYV 755
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEA---DCQQHEYQAMASAWYHVTYHPKYYHESSS- 195
+R D+ +RI +V+ L EA++ F+ D + A ASAWYHVTYHP++ S++
Sbjct: 756 KRREDVVERIRDAVRSLINEARQRFDENADDMVDDDIYAKASAWYHVTYHPEHIKVSATG 815
Query: 194 -----FLSFPWIVGDILLHIKSVNSK 132
+SFPW++ ++LL IK +
Sbjct: 816 RREVHLISFPWVIYNVLLQIKKAGGR 841
[29][TOP]
>UniRef100_Q9ZRY7 RNA-directed RNA polymerase n=1 Tax=Nicotiana tabacum
RepID=Q9ZRY7_TOBAC
Length = 1116
Score = 91.3 bits (225), Expect = 4e-17
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++ +GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 958 SYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRK 1017
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES--- 201
+ I ++V+ L++EA+ WF+ + A ASAWYHVTYH Y Y+E
Sbjct: 1018 DA-----EAIGVAVRCLRKEARAWFKRRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKR 1072
Query: 200 SSFLSFPWIVGDILLHIKSVNSK 132
F+SFPW V D L+ IK ++
Sbjct: 1073 DHFISFPWCVYDQLIQIKKAKAR 1095
[30][TOP]
>UniRef100_B9HJH5 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HJH5_POPTR
Length = 1139
Score = 91.3 bits (225), Expect = 4e-17
Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 7/139 (5%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E +GF+ ++ A +K +Y K+ +M +YG +TE E+++G++ +
Sbjct: 979 SYDPDMEVDGFQKHIDEAFHYKSVYDNKLGNMMDYYGIKTEAEIISGSIMKVGKSFDK-K 1037
Query: 362 RRYTDMKDRILISVKDLQREAKEWF-EADCQQHEYQAMASAWYHVTYHPKY---YHESSS 195
R + D I S++ L+++A+ WF E+D + A ASAWY+VTYHP Y Y+E +
Sbjct: 1038 RDF----DSINYSIRSLRKQARAWFDESDNSPDDLYAKASAWYYVTYHPSYWGRYNEGMN 1093
Query: 194 ---FLSFPWIVGDILLHIK 147
FLSFPW D L+ IK
Sbjct: 1094 RVHFLSFPWCFYDKLIDIK 1112
[31][TOP]
>UniRef100_Q6RFH9 RNA-directed RNA polymerase 2 n=1 Tax=Hordeum vulgare subsp. vulgare
RepID=Q6RFH9_HORVD
Length = 1115
Score = 90.9 bits (224), Expect = 5e-17
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 13/149 (8%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +L +G++ ++ A K Y K+ LM+ YG ++E E+++G + A + +
Sbjct: 954 SYDTDLIVDGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSS 1013
Query: 362 RRYTDMKDRILISVKDLQREAKEWFE-------ADCQQHEYQAMASAWYHVTYHPKYY-- 210
D I ++VK L++EA+ WF D + Y A ASAWYHVTYHP+YY
Sbjct: 1014 DA-----DAIRLAVKSLRKEARSWFSDMSADESGDVHEASY-AKASAWYHVTYHPEYYGC 1067
Query: 209 ----HESSSFLSFPWIVGDILLHIKSVNS 135
+E +SFPW V D LLHIK S
Sbjct: 1068 YNKIYERPHLISFPWCVYDKLLHIKQRKS 1096
[32][TOP]
>UniRef100_B5M059 RNA-directed RNA polymerase 1a (Fragment) n=1 Tax=Hordeum vulgare
RepID=B5M059_HORVU
Length = 1114
Score = 90.9 bits (224), Expect = 5e-17
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 13/149 (8%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +L +G++ ++ A K Y K+ LM+ YG ++E E+++G + A + +
Sbjct: 954 SYDTDLIVDGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSS 1013
Query: 362 RRYTDMKDRILISVKDLQREAKEWFE-------ADCQQHEYQAMASAWYHVTYHPKYY-- 210
D I ++VK L++EA+ WF D + Y A ASAWYHVTYHP+YY
Sbjct: 1014 DA-----DAIRLAVKSLRKEARSWFSDMSADESGDVHEASY-AKASAWYHVTYHPEYYGC 1067
Query: 209 ----HESSSFLSFPWIVGDILLHIKSVNS 135
+E +SFPW V D LLHIK S
Sbjct: 1068 YNKIYERPHLISFPWCVYDKLLHIKQRKS 1096
[33][TOP]
>UniRef100_Q75ZN6 RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata
RepID=Q75ZN6_VIGUN
Length = 257
Score = 89.7 bits (221), Expect = 1e-16
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 6/138 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E +GF +++ A HK Y K+ LM +YG +TE E+L+GN+ + +
Sbjct: 116 SYDFDMEVDGFLDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIIKLSKCFNK-- 173
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES--- 201
RR + ++ +V L+++A+ WF + A ASAWYHVTYHP Y Y++
Sbjct: 174 RRDAEAINK---AVTSLRKDARSWFNEGNNGDDEYAKASAWYHVTYHPSYWGCYNQGMGR 230
Query: 200 SSFLSFPWIVGDILLHIK 147
+LSFPW V LL IK
Sbjct: 231 DHYLSFPWCVFPQLLQIK 248
[34][TOP]
>UniRef100_B2B9K0 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum
RepID=B2B9K0_GOSHI
Length = 1110
Score = 89.4 bits (220), Expect = 2e-16
Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 13/144 (9%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD ++E GF +++ A +K Y K+ LM +YG +TE E+L+G + + +R
Sbjct: 948 YDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGG-------IMKMSR 1000
Query: 359 RYTDMKD--RILISVKDLQREAKEWF-----EADCQQHEYQAMASAWYHVTYHPKY---Y 210
+T +D I ++V+ L++EA+ WF E D + + A ASAWY+VTYH Y Y
Sbjct: 1001 SFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQY 1060
Query: 209 HESSS---FLSFPWIVGDILLHIK 147
+E + FLSFPW V D L+ IK
Sbjct: 1061 NEGMNRDHFLSFPWCVYDKLIQIK 1084
[35][TOP]
>UniRef100_UPI000198295F PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI000198295F
Length = 1109
Score = 89.0 bits (219), Expect = 2e-16
Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E +GFE ++ A +K Y K+ +LM G TE E+L+G++ + D
Sbjct: 957 SYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSF--DK 1014
Query: 362 RRYTDMKDRILISVKDLQREAKEWFE-----ADCQQHEYQAMASAWYHVTYHPKY---YH 207
R+ + I ++V+ L++EA+ WF + A+ASAWYHVTYHP Y Y+
Sbjct: 1015 RKDA---EAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYN 1071
Query: 206 ES---SSFLSFPWIVGDILLHIK 147
E FLSFPW V D L+ IK
Sbjct: 1072 EGMYHDHFLSFPWCVYDKLIQIK 1094
[36][TOP]
>UniRef100_A7P3W3 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P3W3_VITVI
Length = 1076
Score = 89.0 bits (219), Expect = 2e-16
Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E +GFE ++ A +K Y K+ +LM G TE E+L+G++ + D
Sbjct: 924 SYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSF--DK 981
Query: 362 RRYTDMKDRILISVKDLQREAKEWFE-----ADCQQHEYQAMASAWYHVTYHPKY---YH 207
R+ + I ++V+ L++EA+ WF + A+ASAWYHVTYHP Y Y+
Sbjct: 982 RKDA---EAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYN 1038
Query: 206 ES---SSFLSFPWIVGDILLHIK 147
E FLSFPW V D L+ IK
Sbjct: 1039 EGMYHDHFLSFPWCVYDKLIQIK 1061
[37][TOP]
>UniRef100_A4UBI7 Putative RNA-directed RNA polymerase 1 n=1 Tax=Nicotiana attenuata
RepID=A4UBI7_9SOLA
Length = 1044
Score = 89.0 bits (219), Expect = 2e-16
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+Y ++ NGFE + + A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 886 SYAGDMIVNGFEDYTDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGVMKASKTFDRRK 945
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES--- 201
+ I ++V+ L++EA+ WF+ + A ASAWYHVTYH Y Y+E
Sbjct: 946 DA-----EAIGVAVRSLRKEARTWFKKRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLRR 1000
Query: 200 SSFLSFPWIVGDILLHIKSVNSK 132
F+SFPW V D L+ IK ++
Sbjct: 1001 DHFISFPWCVYDQLIQIKKAKAR 1023
[38][TOP]
>UniRef100_Q9LQV2 F10B6.19 n=1 Tax=Arabidopsis thaliana RepID=Q9LQV2_ARATH
Length = 1107
Score = 87.4 bits (215), Expect = 6e-16
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E +GFE +++ A K Y K+ LM +YG +TE E+L+G + R +
Sbjct: 952 SYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGG-------IMRMS 1004
Query: 362 RRYTDMKDRILI--SVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES- 201
+ +T +D I +V+ L++E F A ++ A ASAWYHVTYH Y Y+E
Sbjct: 1005 KSFTKRRDAESIGRAVRALRKETLSLFNASEEEENESAKASAWYHVTYHSSYWGLYNEGL 1064
Query: 200 --SSFLSFPWIVGDILLHIKSVN 138
FLSF W V D L+ IK N
Sbjct: 1065 NRDHFLSFAWCVYDKLVRIKKTN 1087
[39][TOP]
>UniRef100_Q8H1K9 RNA-dependent RNA polymerase 1 n=1 Tax=Arabidopsis thaliana
RepID=Q8H1K9_ARATH
Length = 1107
Score = 87.4 bits (215), Expect = 6e-16
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E +GFE +++ A K Y K+ LM +YG +TE E+L+G + R +
Sbjct: 952 SYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGG-------IMRMS 1004
Query: 362 RRYTDMKDRILI--SVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES- 201
+ +T +D I +V+ L++E F A ++ A ASAWYHVTYH Y Y+E
Sbjct: 1005 KSFTKRRDAESIGRAVRALRKETLSLFNASEEEENESAKASAWYHVTYHSSYWGLYNEGL 1064
Query: 200 --SSFLSFPWIVGDILLHIKSVN 138
FLSF W V D L+ IK N
Sbjct: 1065 NRDHFLSFAWCVYDKLVRIKKTN 1087
[40][TOP]
>UniRef100_B9HVU2 Rna-dependent RNA polymerase (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9HVU2_POPTR
Length = 1102
Score = 85.1 bits (209), Expect = 3e-15
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++E +GF+ ++ A +K Y K+ +M +YG +TE E++ G + R
Sbjct: 966 SYDPDMEVDGFKDYINEAFYYKSEYDNKLGNMMDYYGIKTEAEIIGG-------CIMRMG 1018
Query: 362 RRYTDMKD--RILISVKDLQREAKEWFEADCQQH---EYQAMASAWYHVTYHPKY---YH 207
R + KD I SV L+++A+ WF + + ASAWYHVTYHP++ Y+
Sbjct: 1019 RSFDKKKDLEGINFSVSSLRKQARAWFNESGSKESPDDVYRKASAWYHVTYHPRFWGLYN 1078
Query: 206 ESSS---FLSFPWIVGDILLHIK 147
E FLSFPW V D L IK
Sbjct: 1079 EGMDRVHFLSFPWCVHDKLFEIK 1101
[41][TOP]
>UniRef100_Q9SG02 Putative RNA-directed RNA polymerase; 73997-69985 n=1 Tax=Arabidopsis
thaliana RepID=Q9SG02_ARATH
Length = 1196
Score = 84.0 bits (206), Expect = 6e-15
Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD LE GFE + A HK +Y ++ L+ Y + E+E++TG++ + Y ++
Sbjct: 1022 YDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKY---TSK 1078
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHE----------YQAMASAWYHVTYHPKYY 210
+ ++K+R+ S L++E ++ FE HE Y+ ASAWYHVTYHP++
Sbjct: 1079 KQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWV 1138
Query: 209 HES-----------SSFLSFPWIVGDILLHIK 147
+S ++ LSF WI D L IK
Sbjct: 1139 KKSLELQDPDESSHAAMLSFAWIAADYLARIK 1170
[42][TOP]
>UniRef100_A4UV46 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum
RepID=A4UV46_SOLTU
Length = 1065
Score = 83.2 bits (204), Expect = 1e-14
Identities = 41/111 (36%), Positives = 64/111 (57%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +LE +GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R
Sbjct: 956 SYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRK 1015
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYY 210
+ I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+
Sbjct: 1016 D-----AEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYW 1061
[43][TOP]
>UniRef100_Q9LKP0 RNA-dependent RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q9LKP0_ARATH
Length = 1196
Score = 82.8 bits (203), Expect = 1e-14
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD LE GFE + A HK Y ++ L+ Y + E+E++TG++ + Y ++
Sbjct: 1022 YDAVLEIPGFEDLIPEAWGHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKY---TSK 1078
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHE----------YQAMASAWYHVTYHPKYY 210
+ ++K+R+ S L++E ++ FE HE Y+ ASAWYHVTYHP++
Sbjct: 1079 KQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWV 1138
Query: 209 HES-----------SSFLSFPWIVGDILLHIK 147
+S ++ LSF WI D L IK
Sbjct: 1139 KKSLELQDPDESSHAAMLSFAWIAADYLARIK 1170
[44][TOP]
>UniRef100_Q6RFI0 RNA-directed RNA polymerase 1 n=1 Tax=Hordeum vulgare subsp. vulgare
RepID=Q6RFI0_HORVD
Length = 1115
Score = 82.4 bits (202), Expect = 2e-14
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 13/145 (8%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +L +G++ ++ A KE Y K+ LM+ YG +E E+++G + A + +
Sbjct: 953 SYDTDLIVDGYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKS 1012
Query: 362 RRYTDMKDRILISVKDLQREAKEWF------EADCQQHEYQAMASAWYHVTYHPKY---- 213
D I ++VK L++EA+ WF E+ A ASAWYHVTYHP+Y
Sbjct: 1013 DA-----DAIRLAVKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHPQYWGCY 1067
Query: 212 ---YHESSSFLSFPWIVGDILLHIK 147
Y +SFPW V D L+ IK
Sbjct: 1068 NEGYDHRPHLISFPWCVYDKLILIK 1092
[45][TOP]
>UniRef100_C7F747 Putative RNA-dependent RNA polymerase n=1 Tax=Zea mays
RepID=C7F747_MAIZE
Length = 1108
Score = 82.4 bits (202), Expect = 2e-14
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +L +G+E ++ A KE Y ++ LM YG ++E E+++G + A N
Sbjct: 956 SYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCILKMAK-----N 1010
Query: 362 RRYTDMKDRILISVKDLQREAKEWFE----ADCQQHEYQAMASAWYHVTYHPKYY----- 210
+ D I ++V+ L++EA+ WF + Q +A ASAWYHVTYH +Y+
Sbjct: 1011 FTKSSDADAIRMAVRSLRKEARSWFNEMSTGEDGQDAMEAKASAWYHVTYHQQYWGSYNE 1070
Query: 209 -HESSSFLSFPWIVGDILLHIK 147
++ +SFPW V D L+ IK
Sbjct: 1071 GYDRPHLISFPWCVYDKLVAIK 1092
[46][TOP]
>UniRef100_B5M060 RNA-directed RNA polymerase 1b n=1 Tax=Hordeum vulgare
RepID=B5M060_HORVU
Length = 1115
Score = 82.4 bits (202), Expect = 2e-14
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 13/145 (8%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +L +G++ ++ A KE Y K+ LM+ YG +E E+++G + A + +
Sbjct: 953 SYDTDLIVDGYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKS 1012
Query: 362 RRYTDMKDRILISVKDLQREAKEWF------EADCQQHEYQAMASAWYHVTYHPKY---- 213
D I ++VK L++EA+ WF E+ A ASAWYHVTYHP+Y
Sbjct: 1013 DA-----DAIRLAVKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHPQYWGCY 1067
Query: 212 ---YHESSSFLSFPWIVGDILLHIK 147
Y +SFPW V D L+ IK
Sbjct: 1068 NKGYDHRPHLISFPWCVYDKLILIK 1092
[47][TOP]
>UniRef100_C5XZ94 Putative uncharacterized protein Sb04g028630 n=1 Tax=Sorghum bicolor
RepID=C5XZ94_SORBI
Length = 1114
Score = 81.6 bits (200), Expect = 3e-14
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD +L +G+E ++ A KE Y ++ LM YG ++E E+++G A N
Sbjct: 956 SYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCFLKMAK-----N 1010
Query: 362 RRYTDMKDRILISVKDLQREAKEWFE----ADCQQHEYQAMASAWYHVTYHPKYY----- 210
+ D I ++V+ L++EA+ WF ++ Q +A ASAWYHVTY P+Y+
Sbjct: 1011 FTKSSDADAIRMAVRSLRKEARSWFNEMSTSEDDQDATEAKASAWYHVTYDPQYWGNYNE 1070
Query: 209 -HESSSFLSFPWIVGDILLHIK 147
++ +SFPW V D L+ IK
Sbjct: 1071 GYDRPHLISFPWCVYDKLVIIK 1092
[48][TOP]
>UniRef100_B8A9C4 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8A9C4_ORYSI
Length = 307
Score = 80.1 bits (196), Expect = 9e-14
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD++LE G FL +A K Y +++AL+ Y TE EL+TG++ S ++ ++
Sbjct: 133 YDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TSLVKNSSK 189
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----DCQQHE------YQAMASAWYHVTYHPKYY 210
+ D+KDR+ + L++E K FE+ C+ + Y+ ASAWY VTYHPK+
Sbjct: 190 KQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIDDDEKNLLYEMKASAWYQVTYHPKWV 249
Query: 209 HESSSF-----------LSFPWIVGDILLHIK 147
+S LSF WI D L IK
Sbjct: 250 EKSRGILGPDGEEIPASLSFAWIPVDYLARIK 281
[49][TOP]
>UniRef100_B9F2V8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group
RepID=B9F2V8_ORYSJ
Length = 1027
Score = 79.7 bits (195), Expect = 1e-13
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 12/144 (8%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++ +G+E ++ A + K+ Y K+ LM YG ++E E+++G + A + +
Sbjct: 868 SYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKS 927
Query: 362 RRYTDMKDRILISVKDLQREAKEWF---EADCQQHEY---QAMASAWYHVTYHPKYY--- 210
D I ++V+ L++EA+ F D H + +A ASAWYHVTYHP+++
Sbjct: 928 D-----ADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCY 982
Query: 209 ---HESSSFLSFPWIVGDILLHIK 147
+E F+SFPW + + LL IK
Sbjct: 983 NEGYERPHFISFPWCIYEKLLRIK 1006
[50][TOP]
>UniRef100_A2X9D0 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2X9D0_ORYSI
Length = 1067
Score = 79.7 bits (195), Expect = 1e-13
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 12/144 (8%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++ +G+E ++ A + K+ Y K+ LM YG ++E E+++G + A + +
Sbjct: 908 SYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKS 967
Query: 362 RRYTDMKDRILISVKDLQREAKEWF---EADCQQHEY---QAMASAWYHVTYHPKYY--- 210
D I ++V+ L++EA+ F D H + +A ASAWYHVTYHP+++
Sbjct: 968 D-----ADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCY 1022
Query: 209 ---HESSSFLSFPWIVGDILLHIK 147
+E F+SFPW + + LL IK
Sbjct: 1023 NEGYERPHFISFPWCIYEKLLRIK 1046
[51][TOP]
>UniRef100_Q0DXS3 Probable RNA-dependent RNA polymerase 1 n=1 Tax=Oryza sativa
Japonica Group RepID=RDR1_ORYSJ
Length = 740
Score = 79.7 bits (195), Expect = 1e-13
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 12/144 (8%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
+YD ++ +G+E ++ A + K+ Y K+ LM YG ++E E+++G + A + +
Sbjct: 581 SYDTDMIVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKS 640
Query: 362 RRYTDMKDRILISVKDLQREAKEWF---EADCQQHEY---QAMASAWYHVTYHPKYY--- 210
D I ++V+ L++EA+ F D H + +A ASAWYHVTYHP+++
Sbjct: 641 D-----ADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCY 695
Query: 209 ---HESSSFLSFPWIVGDILLHIK 147
+E F+SFPW + + LL IK
Sbjct: 696 NEGYERPHFISFPWCIYEKLLRIK 719
[52][TOP]
>UniRef100_UPI0000DD8B5B Os01g0527600 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8B5B
Length = 385
Score = 77.4 bits (189), Expect = 6e-13
Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD++LE G FL +A K Y +++AL+ Y TE EL+TG++ ++ ++
Sbjct: 211 YDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TFLVKNSSK 267
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
+ D+KDR+ + L++E K FE+ D + Y+ ASAWY VTYHPK+
Sbjct: 268 KQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWV 327
Query: 209 HESSSF-----------LSFPWIVGDILLHIK 147
+S LSF WI D L IK
Sbjct: 328 EKSRGILGPDGEEIPASLSFAWIPVDYLARIK 359
[53][TOP]
>UniRef100_B9EXA5 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group
RepID=B9EXA5_ORYSJ
Length = 1571
Score = 77.4 bits (189), Expect = 6e-13
Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD++LE G FL +A K Y +++AL+ Y TE EL+TG++ ++ ++
Sbjct: 1397 YDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TFLVKNSSK 1453
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
+ D+KDR+ + L++E K FE+ D + Y+ ASAWY VTYHPK+
Sbjct: 1454 KQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWV 1513
Query: 209 HESSSF-----------LSFPWIVGDILLHIK 147
+S LSF WI D L IK
Sbjct: 1514 EKSRGILGPDGEEIPASLSFAWIPVDYLARIK 1545
[54][TOP]
>UniRef100_Q8LHH9 Probable RNA-dependent RNA polymerase SHL2 n=1 Tax=Oryza sativa
Japonica Group RepID=SHL2_ORYSJ
Length = 1218
Score = 77.4 bits (189), Expect = 6e-13
Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD++LE G FL +A K Y +++AL+ Y TE EL+TG++ ++ ++
Sbjct: 1044 YDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TFLVKNSSK 1100
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
+ D+KDR+ + L++E K FE+ D + Y+ ASAWY VTYHPK+
Sbjct: 1101 KQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWV 1160
Query: 209 HESSSF-----------LSFPWIVGDILLHIK 147
+S LSF WI D L IK
Sbjct: 1161 EKSRGILGPDGEEIPASLSFAWIPVDYLARIK 1192
[55][TOP]
>UniRef100_C5Z764 Putative uncharacterized protein Sb10g025950 n=1 Tax=Sorghum bicolor
RepID=C5Z764_SORBI
Length = 1239
Score = 77.0 bits (188), Expect = 8e-13
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 13/144 (9%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD++LE G +FLE A K +Y ++ L+ YG +E EL+TG + Y N+
Sbjct: 1082 YDIDLEVPGALSFLEDAWQCKCLYEAQLNTLLSQYGLRSEAELVTGEIWPLVGY----NK 1137
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA------DCQQHEYQAMASAWYHVTYHPKYY---- 210
+K+RI + L +E + FE+ D + Y+ ASAWY VTYHP++
Sbjct: 1138 YQYQLKERINYAYSKLHQEFRSIFESIDISYCDNKNLAYEMKASAWYQVTYHPEFIRLRE 1197
Query: 209 ---HESSSFLSFPWIVGDILLHIK 147
++ + LSF WI D L IK
Sbjct: 1198 PDDEKTPARLSFAWIAVDYLAQIK 1221
[56][TOP]
>UniRef100_C5Z766 Putative uncharacterized protein Sb10g025970 n=1 Tax=Sorghum bicolor
RepID=C5Z766_SORBI
Length = 1251
Score = 75.5 bits (184), Expect = 2e-12
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 14/145 (9%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE G +FLE A K +Y ++ L+ +G +E EL+TG + + Y N+
Sbjct: 1102 YDTDLEVPGALSFLEDAWKCKCLYEAQLNTLLNQFGVHSEAELVTGEIWSLVGY----NK 1157
Query: 359 RYT-DMKDRILISVKDLQREAKEWFEA------DCQQHEYQAMASAWYHVTYHPKYY--- 210
+Y +K+R+ + L +E + FE+ D + Y+ ASAWY VTYHP++
Sbjct: 1158 KYQYQLKERLNYAYSKLHQEFRSIFESIDVSYGDSKNLAYEMKASAWYQVTYHPEFIRLR 1217
Query: 209 ----HESSSFLSFPWIVGDILLHIK 147
++ + LSF WI D L IK
Sbjct: 1218 ELDDEKTPARLSFAWIPVDYLAQIK 1242
[57][TOP]
>UniRef100_B9HA49 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HA49_POPTR
Length = 1198
Score = 74.7 bits (182), Expect = 4e-12
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 21/158 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YDL+LE G F+ A K Y ++ L+ Y + E+E++TG++ S + +R
Sbjct: 1024 YDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVW---SMPKGSSR 1080
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
+ D+K+R+ S L+RE ++ FE D + Y+ ASAWY VTYHP +
Sbjct: 1081 KQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWI 1140
Query: 209 HES-----------SSFLSFPWIVGDILLHIKSVNSKV 129
+S S LSF WI D L IK +S++
Sbjct: 1141 QKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRI 1178
[58][TOP]
>UniRef100_B4FZU3 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FZU3_MAIZE
Length = 552
Score = 72.4 bits (176), Expect = 2e-11
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD ++E G FL +A K Y ++ AL+ YG TE EL+T ++ + Y +R
Sbjct: 378 YDADMEVAGAADFLSSAWQCKCSYETQLNALLNQYGVRTEAELVTEHIWSLPKY---SSR 434
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
R D+K+R+ + L +E + FE+ D + Y+ ASAWY VTYHP++
Sbjct: 435 RQGDIKERLKNAYYALHKEFRSIFESIVTDQTEISDDEKSRFYEMKASAWYQVTYHPEWV 494
Query: 209 HESSSF-----------LSFPWIVGDILLHIK 147
+S LSF WI + L IK
Sbjct: 495 QKSREMFKSDCEDMPARLSFAWIAVEHLARIK 526
[59][TOP]
>UniRef100_B6DZR9 RNA-directed RNA polymerase 6a (Fragment) n=1 Tax=Hordeum vulgare
RepID=B6DZR9_HORVU
Length = 1047
Score = 71.6 bits (174), Expect = 3e-11
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 27/158 (17%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD ++E G FL +A K Y ++ AL+K YG TE EL+T ++ + Y ++R
Sbjct: 867 YDTDMEVPGAADFLSSAWQCKCSYEAQLDALLKQYGVRTEAELVTEHIWSLPKY---NSR 923
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA--------------DCQQHEYQAMASAWYHVTYH 222
+ D+K+R+ + L++E + FE+ D + Y+ ASAWY VTYH
Sbjct: 924 KQGDIKERLKNAYSALRKEYRAIFESVEAPGQAKAVALDDDERNRVYEMKASAWYQVTYH 983
Query: 221 PKYYHES-------------SSFLSFPWIVGDILLHIK 147
PK+ S + LSF WI + L IK
Sbjct: 984 PKWVERSREALLEPDREEDTPARLSFAWIPVEHLARIK 1021
[60][TOP]
>UniRef100_B9IKW9 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9IKW9_POPTR
Length = 1200
Score = 70.9 bits (172), Expect = 6e-11
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE G ++ A K Y ++ L+ Y + E+E++TG++ + Y +R
Sbjct: 1026 YDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKY---SSR 1082
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHE----------YQAMASAWYHVTYHPKYY 210
+ ++KDR+ S L++E ++ FE + E Y+ ASAWY V YHP +
Sbjct: 1083 KQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWV 1142
Query: 209 HES-----------SSFLSFPWIVGDILLHIK 147
+S S LSF WI D L IK
Sbjct: 1143 KKSLELQDPDGAGTSVMLSFAWIAADYLARIK 1174
[61][TOP]
>UniRef100_C5XM68 Putative uncharacterized protein Sb03g022880 n=1 Tax=Sorghum bicolor
RepID=C5XM68_SORBI
Length = 1207
Score = 70.1 bits (170), Expect = 1e-10
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD ++E G FL +A K Y ++ AL+ YG TE EL+T ++ + Y +R
Sbjct: 1033 YDADMEVPGATDFLSSAWECKCSYETQLNALLNQYGVRTEAELVTEHIWSLPKY---SSR 1089
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
+ D+K+R+ + L ++ + FE+ D + Y+ ASAWY VTYHPK+
Sbjct: 1090 KQGDIKERLKNAYSALHKDFRSIFESFVTDQTEISDDEKIRFYEMKASAWYQVTYHPKWV 1149
Query: 209 HESSSF-----------LSFPWIVGDILLHIK 147
+S LSF WI + L IK
Sbjct: 1150 QKSREMLKPDFEDMPARLSFAWIGVEHLARIK 1181
[62][TOP]
>UniRef100_B9RP51 RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis
RepID=B9RP51_RICCO
Length = 1203
Score = 70.1 bits (170), Expect = 1e-10
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE +G ++ A K Y ++ L+ Y + E+E++TG++ S + ++R
Sbjct: 1029 YDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIW---SMPKCNSR 1085
Query: 359 RYTDMKDRILISVKDLQREAKEWFEADCQQHE----------YQAMASAWYHVTYHPKYY 210
+ ++K+R+ S L++E ++ FE E Y+ ASAWY V YHPK+
Sbjct: 1086 KQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWV 1145
Query: 209 HES-----------SSFLSFPWIVGDILLHIK 147
++S +S LSF WI D L IK
Sbjct: 1146 NKSMELQEPDAAGCASMLSFAWIAADYLARIK 1177
[63][TOP]
>UniRef100_C6T7X1 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T7X1_SOYBN
Length = 290
Score = 67.4 bits (163), Expect = 6e-10
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 28/159 (17%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE G F+ A K Y +++ L+ Y + E+E++TG + + Y ++R
Sbjct: 107 YDKDLEVPGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKY---NSR 163
Query: 359 RYTDMKDRILISVKDLQREAKEWFE------ADCQQHE----YQAMASAWYHVTYHPKYY 210
+ ++K+R+ S L++E + FE + + E Y+ ASAWY VTYHP++
Sbjct: 164 KQGELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWV 223
Query: 209 HE------------------SSSFLSFPWIVGDILLHIK 147
+ S+ LSFPWI D L K
Sbjct: 224 KKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTK 262
[64][TOP]
>UniRef100_A9CRC9 RNA-dependent RNA polymerase 6 n=1 Tax=Nicotiana tabacum
RepID=A9CRC9_TOBAC
Length = 1197
Score = 66.6 bits (161), Expect = 1e-09
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD LE G AF++ A + K Y ++ L+ Y E+E++TG++ + Y +
Sbjct: 1023 YDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKY---SAK 1079
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
+ ++K+R+ + L++E + FE D + Y+ ASAWY VTYHP +
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139
Query: 209 HES-----------SSFLSFPWIVGDILLHIK 147
S + LSF WI D L IK
Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIK 1171
[65][TOP]
>UniRef100_B3TNC1 RNA-dependent RNA polymerase n=1 Tax=Nicotiana attenuata
RepID=B3TNC1_9SOLA
Length = 1197
Score = 64.7 bits (156), Expect = 4e-09
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE G AF++ A + K Y ++ L+ Y E+E++TG++ + Y +
Sbjct: 1023 YDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKY---SAK 1079
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
+ ++K+R+ + L++E + FE D + Y+ ASAWY VTY+P +
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 209 H-----------ESSSFLSFPWIVGDILLHIK 147
S+ LSF WI D L IK
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIK 1171
[66][TOP]
>UniRef100_C5YIV2 Putative uncharacterized protein Sb07g006150 n=1 Tax=Sorghum bicolor
RepID=C5YIV2_SORBI
Length = 1220
Score = 64.3 bits (155), Expect = 5e-09
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Frame = -2
Query: 542 AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDN 363
AYD++LE G F A K Y ++ AL+ Y TE EL+TG + + A +R
Sbjct: 1061 AYDIDLEVPGASHFFLDAWQWKCAYESRLNALLNQYSGCTEAELVTGVIWSLADGRKRKK 1120
Query: 362 RRYTDMKDRILISVKDLQREAKEWFEADCQQHE----------YQAMASAWYHVTYHPKY 213
+ ++ + +L +E + FE + Y+ ASAWY VTYHP++
Sbjct: 1121 H---EANEKFSHAYPELHQEFRRVFENIAADQDRMSDEKKNLVYEMKASAWYQVTYHPEW 1177
Query: 212 Y----------HESSSFLSFPWIVGDILLHIK 147
E + LSFPWI D L IK
Sbjct: 1178 IRFSREKEPHGEERPARLSFPWIAIDYLACIK 1209
[67][TOP]
>UniRef100_A7P5T3 Chromosome chr4 scaffold_6, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P5T3_VITVI
Length = 1197
Score = 63.5 bits (153), Expect = 9e-09
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 22/153 (14%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
+D +L G F+ A HK Y ++ L+ Y + E+E++TG++ + Y +R
Sbjct: 1022 FDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKY---KSR 1078
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
+ ++ +R+ + L++E ++ FE D + Y+ ASAWY VTYHP +
Sbjct: 1079 KQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWV 1138
Query: 209 HESSS------------FLSFPWIVGDILLHIK 147
+S LSF WI D L IK
Sbjct: 1139 KKSLELQNPDEVFGERVMLSFAWITADYLARIK 1171
[68][TOP]
>UniRef100_C3ZPA8 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3ZPA8_BRAFL
Length = 1867
Score = 63.5 bits (153), Expect = 9e-09
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 16/148 (10%)
Frame = -2
Query: 536 DLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTG---NLQNRASYLQRD 366
D +L GF++++E A + +Y M ++M YG +E E+++G ++ R L+
Sbjct: 970 DHDLVREGFDSYIEDAQTQLNIYNNMMMSIMSLYGITSEGEVVSGCILKVKQRLGLLK-- 1027
Query: 365 NRRYTDMKDRILISVKDLQREAK---------EWFEADCQQHEYQAMASAWYHVTYHPKY 213
N R+ ++ + + K L R+ + E + ++ E ASAWY VTY Y
Sbjct: 1028 NERF-EVTEYVRARFKTLWRKTRAEFFKQFDVEELSEERRKEEQLKRASAWYMVTYSDAY 1086
Query: 212 ----YHESSSFLSFPWIVGDILLHIKSV 141
+ S LSFPW+V D+L +K +
Sbjct: 1087 DEKPHDPSPKLLSFPWVVYDVLASLKKI 1114
[69][TOP]
>UniRef100_C3Z737 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z737_BRAFL
Length = 1492
Score = 63.2 bits (152), Expect = 1e-08
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Frame = -2
Query: 509 EAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDRIL 330
+ + A + Y +++ LM YG ETE E ++G + ++ DNR +R+
Sbjct: 1067 QRYKRQAEQSRGRYNDQLKYLMDRYGIETEAEAMSGCIGRIHKHM--DNRYDRHEVERVF 1124
Query: 329 IS-VKDLQREAKEWF------EADCQQHEY----QAMASAWYHVTYHPKYYHESSSFLSF 183
+KDL+R +E F E + ++ +Y QA ASAWY VTY + LSF
Sbjct: 1125 KERIKDLRRRTREEFFVEFGGEKNVKKSDYPPEVQAKASAWYVVTYSDA---NENRLLSF 1181
Query: 182 PWIVGDILLHIK 147
PWIVGDIL IK
Sbjct: 1182 PWIVGDILAVIK 1193
[70][TOP]
>UniRef100_C3Z3S5 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z3S5_BRAFL
Length = 1922
Score = 62.4 bits (150), Expect = 2e-08
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Frame = -2
Query: 536 DLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTG---NLQNRASYLQRD 366
D +L GFE++ + A + +Y K+ ++M YG +E E+++G ++ R L+
Sbjct: 988 DQDLIREGFESYTDDAQTQLNIYNTKIRSIMSLYGISSEGEVVSGCILKVKQRLGLLK-- 1045
Query: 365 NRRYTDMKDRILISVKDLQR----------EAKEWFEADCQQHEYQAMASAWYHVTYHPK 216
N R+ ++ + + K L R + KE D ++ E ASAWY VTY
Sbjct: 1046 NERF-EVTEYVRARFKTLWRKTRAEFFRQFDEKEESSTDRRREEQLKKASAWYMVTYSDD 1104
Query: 215 YYHE----SSSFLSFPWIVGDILLHIK 147
Y ++ S LSFPW+V D+L +K
Sbjct: 1105 YNNKPHGASPKLLSFPWVVYDVLGGLK 1131
[71][TOP]
>UniRef100_Q71BB5 RNA-directed RNA polymerase-like protein n=1 Tax=Branchiostoma
floridae RepID=Q71BB5_BRAFL
Length = 1005
Score = 61.6 bits (148), Expect = 3e-08
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
Frame = -2
Query: 536 DLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTG---NLQNRASYLQRD 366
D +L GF++++E A + +Y M ++M YG +E E+++G ++ R L+
Sbjct: 850 DHDLVREGFDSYIEDAQTQLNIYNNMMMSIMSLYGITSEGEVVSGCILKVKQRLGLLK-- 907
Query: 365 NRRYTDMKDRILISVKDLQREAK---------EWFEADCQQHEYQAMASAWYHVTYHP-- 219
N R+ ++ + + K L R+ + E + ++ E ASAWY VTY
Sbjct: 908 NERF-EVAEYVRARFKTLWRKTRAEFFKQFDVEELSEERRKEEQLKKASAWYMVTYSDAN 966
Query: 218 KYYHESSSFLSFPWIVGDILLHIKSV 141
K S LSFPW+V D+L +K +
Sbjct: 967 KPLDPSPKLLSFPWVVYDVLASLKKI 992
[72][TOP]
>UniRef100_B5BLP6 RNA-dependent RNA polymerase 6 n=1 Tax=Nicotiana tabacum
RepID=B5BLP6_TOBAC
Length = 1197
Score = 60.5 bits (145), Expect = 8e-08
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD L G F++ A + K Y ++ L+ Y E+E++TG++ + Y +
Sbjct: 1023 YDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKY---SAK 1079
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
+ ++K+R+ + L++E + FE D + Y+ ASAWY VTY+P +
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 209 H-----------ESSSFLSFPWIVGDILLHIK 147
S+ LSF WI D L IK
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIK 1171
[73][TOP]
>UniRef100_UPI0001868CE3 hypothetical protein BRAFLDRAFT_101874 n=1 Tax=Branchiostoma floridae
RepID=UPI0001868CE3
Length = 1415
Score = 58.9 bits (141), Expect = 2e-07
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Frame = -2
Query: 536 DLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRR 357
D L ++++ A ++ Y +++ +LM YG ETE E ++G + +++ + R
Sbjct: 977 DCGLVVGEHVSYVKKARRSRDRYNDQLRSLMAQYGIETEAEAVSGCIVKLHKHMEDRHER 1036
Query: 356 YTDMKDRILISVKDLQREAKEWF--------EADCQQHEYQAMASAWYHVTYHPKYYHES 201
Y +++ + ++DL++ ++ F + ASAWY VTY
Sbjct: 1037 Y-EIERVAKVRIEDLRKRTRQDFFEEFGGEESVELDHPHVLGKASAWYTVTYS----DPD 1091
Query: 200 SSFLSFPWIVGDILLHIKS 144
+ LSFPW++GD+L +K+
Sbjct: 1092 AKLLSFPWVIGDVLGILKT 1110
[74][TOP]
>UniRef100_A9U458 RNA-directed RNA polymerase (Fragment) n=2 Tax=Physcomitrella patens
subsp. patens RepID=A9U458_PHYPA
Length = 1049
Score = 58.9 bits (141), Expect = 2e-07
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 30/161 (18%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +L+ G+E +L+ A + K Y ++ +M + + E L+ L+ + L+ NR
Sbjct: 888 YDYDLQVPGYEVYLDDAWTKKISYDRQLRCMMTHFNVQREAALIASWLKRGSPGLRSVNR 947
Query: 359 R------------YTDMKDRILISVKDLQRE--AKEWFEADCQQ----HEYQAMASAWYH 234
Y + + + K L + +++ E+ + ++ A ASAWYH
Sbjct: 948 NRGDAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSEDMVESSSSEIKGPTDFAAKASAWYH 1007
Query: 233 VTYHPKYYH----------ESS--SFLSFPWIVGDILLHIK 147
VTYHP++ ESS LSFPWI +L +IK
Sbjct: 1008 VTYHPEWKQKALEIFENSGESSPRPLLSFPWITASVLSNIK 1048
[75][TOP]
>UniRef100_Q647I5 Putative RNA-dependent RNA polymerase SDE1 n=1 Tax=Nicotiana
benthamiana RepID=Q647I5_NICBE
Length = 1197
Score = 58.2 bits (139), Expect = 4e-07
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Frame = -2
Query: 539 YDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNR 360
YD +LE G F+ A + K Y ++ L+ Y E+E++TG++ + Y +
Sbjct: 1023 YDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKY---SAK 1079
Query: 359 RYTDMKDRILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYY 210
+ ++K+R+ + L++E + FE D + Y+ ASAWY VTY+P +
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 209 H-----------ESSSFLSFPWIVGDILLHI 150
S+ LSF WI D L I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARI 1170
[76][TOP]
>UniRef100_C3Z728 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma
floridae RepID=C3Z728_BRAFL
Length = 1207
Score = 57.4 bits (137), Expect = 7e-07
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Frame = -2
Query: 536 DLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRR 357
D L ++++ A ++ Y +++ +LM YG ETE E ++G + ++ R
Sbjct: 841 DYGLVIGEHVSYVKKARRSRDRYNDQLRSLMAQYGIETESEAVSGCIVKLHKHMDDRYER 900
Query: 356 YTDMKDRILISVKDLQREAKEWF--------EADCQQHEYQAMASAWYHVTYHPKYYHES 201
Y +++ + ++DL++ ++ F + ASAWY VTY
Sbjct: 901 Y-EIERVAKVRIEDLRKRTRQDFFEEFGGEESVELDHPHVLKKASAWYTVTYS----DPD 955
Query: 200 SSFLSFPWIVGDIL--LHIKSVNS 135
+ LSFPW++GDIL L++K+ +
Sbjct: 956 AKLLSFPWVIGDILGILNLKTATT 979
[77][TOP]
>UniRef100_UPI0001868BE6 hypothetical protein BRAFLDRAFT_101867 n=1 Tax=Branchiostoma floridae
RepID=UPI0001868BE6
Length = 1395
Score = 53.9 bits (128), Expect = 7e-06
Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Frame = -2
Query: 431 AETEDELLTGNLQNRASYLQRDNRRYTDMKDRILIS-VKDLQREAKEWF------EADCQ 273
AETE E ++G + ++ DNR +R+ +KDL+R +E F E + +
Sbjct: 982 AETEAEAMSGCIGRIHKHM--DNRYDRHEVERVFKERIKDLRRRTREEFFVEFGGEKNVK 1039
Query: 272 QHEY----QAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILLHIK 147
+ +Y QA ASAWY VTY + LSFPWIVGDIL IK
Sbjct: 1040 KSDYPPEVQAKASAWYVVTYSGA---NENRLLSFPWIVGDILAVIK 1082
[78][TOP]
>UniRef100_B7PCS8 RNA-dependent RNA polymerase, putative (Fragment) n=1 Tax=Ixodes
scapularis RepID=B7PCS8_IXOSC
Length = 632
Score = 53.5 bits (127), Expect = 9e-06
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Frame = -2
Query: 524 EANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTD- 348
E G+ E+A + +Y +M +++ +G +TE E+++G + + + Y N+ TD
Sbjct: 226 EYPGWRDHEESAQTALAVYGSRMEQILRQHGIKTEGEVVSGIINSVSDY----NKSKTDK 281
Query: 347 --MKDRILISVKDLQREAKEWF----EADCQQHEYQA----------MASAWYHVTYHPK 216
++ + +DL + +E F +A CQ + +ASAWY VTY
Sbjct: 282 ASVEALVEKQYRDLVKSTREQFFRDVDAACQSLKVPTEAGKLTVLLQVASAWYMVTYAGV 341
Query: 215 YYHESSSFLSFPWIVGDILLHI-KSVNSKVL 126
+ + S+ SFPW V D+LL + K VN+ L
Sbjct: 342 W--QESNCYSFPWSVSDVLLLVMKQVNASEL 370