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[1][TOP] >UniRef100_A7PD40 Chromosome chr17 scaffold_12, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7PD40_VITVI Length = 1127 Score = 192 bits (488), Expect = 1e-47 Identities = 88/128 (68%), Positives = 105/128 (82%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE FLE A HKEMYAEKM LM FYGAE+EDE+LTGNL+N+ YLQRDNRR+T+MKDR Sbjct: 986 GFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQRDNRRFTEMKDR 1045 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILL 116 ILISVK LQ+EAKEW C+ H++Q MASAWYHVTYH + ++ +FLSFPWIVG++LL Sbjct: 1046 ILISVKSLQKEAKEWLYGSCKPHQHQKMASAWYHVTYHSTFSSQTPNFLSFPWIVGEVLL 1105 Query: 115 HIKSVNSK 92 IKS NS+ Sbjct: 1106 VIKSANSR 1113 [2][TOP] >UniRef100_B9RB56 RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RB56_RICCO Length = 983 Score = 191 bits (486), Expect = 2e-47 Identities = 91/130 (70%), Positives = 105/130 (80%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE F+E A SHK+MY EK++ LM +Y A+ EDE+LTGNLQN+A YLQRDNRRY D KDR Sbjct: 836 GFEEFVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKDR 895 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILL 116 ILISVK LQ+EAKEWFE+ CQ E Q +ASAWYHVTYHP Y+ E + LSFPWIV DILL Sbjct: 896 ILISVKSLQKEAKEWFESCCQAKEKQRLASAWYHVTYHPSYFQEGITCLSFPWIVADILL 955 Query: 115 HIKSVNSKVL 86 +IKS NSK L Sbjct: 956 NIKSANSKNL 965 [3][TOP] >UniRef100_B9IEP4 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IEP4_POPTR Length = 1110 Score = 191 bits (486), Expect = 2e-47 Identities = 87/128 (67%), Positives = 109/128 (85%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE FL AS +KE Y EKM+ LM +YGA+TEDE+LTGNL++R +YLQRDNR+Y D+KDR Sbjct: 981 GFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQRDNRKYGDVKDR 1040 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILL 116 IL+S+K+L++EAKEWFE+ C E+Q MASAWYHVTYHP Y+HE + LSFPWIVGDILL Sbjct: 1041 ILVSLKNLKKEAKEWFESSCNPTEHQCMASAWYHVTYHPTYFHERMNCLSFPWIVGDILL 1100 Query: 115 HIKSVNSK 92 +IKS+NS+ Sbjct: 1101 NIKSLNSR 1108 [4][TOP] >UniRef100_Q647I4 Putative RNA-dependent RNA polymerase RdRP2 n=1 Tax=Nicotiana benthamiana RepID=Q647I4_NICBE Length = 1120 Score = 169 bits (428), Expect = 9e-41 Identities = 74/131 (56%), Positives = 102/131 (77%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G+EAF+ETA +HKE Y ++M +L+ +YGAE E E+LTGNL+ ++ YLQRDNRRY ++KDR Sbjct: 989 GYEAFIETAKNHKETYLDRMNSLLNYYGAEKEVEILTGNLRQKSVYLQRDNRRYFELKDR 1048 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILL 116 IL+S K LQ+E K WF C++ E++ +ASAWYHVTYHP Y S++ L FPW+VGDILL Sbjct: 1049 ILVSAKSLQKEVKGWFTGCCKEDEHKKLASAWYHVTYHPSYCEGSANCLGFPWVVGDILL 1108 Query: 115 HIKSVNSKVLS 83 IK N++ ++ Sbjct: 1109 DIKLHNTRKIT 1119 [5][TOP] >UniRef100_O82504 F2P3.11 protein n=1 Tax=Arabidopsis thaliana RepID=O82504_ARATH Length = 1133 Score = 162 bits (411), Expect = 8e-39 Identities = 74/129 (57%), Positives = 101/129 (78%), Gaps = 1/129 (0%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE+F+ETA +H++MY EK+T+LM +YGA E+E+LTG L+ + YL RDNRRY DMKDR Sbjct: 991 GFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDR 1050 Query: 295 ILISVKDLQREAKEWFEADCQ-QHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDIL 119 I +SVKDL +EA WFE C+ + + + +ASAWY+VTY+P + E +FLSFPWIVGD+L Sbjct: 1051 ITLSVKDLHKEAMGWFEKSCEDEQQKKKLASAWYYVTYNPNHRDEKLTFLSFPWIVGDVL 1110 Query: 118 LHIKSVNSK 92 L IK+ N++ Sbjct: 1111 LDIKAENAQ 1119 [6][TOP] >UniRef100_Q19VG2 RNA-dependent RNA polymerase n=1 Tax=Zea mays RepID=Q19VG2_MAIZE Length = 1127 Score = 131 bits (330), Expect = 2e-29 Identities = 64/124 (51%), Positives = 85/124 (68%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GF+ FL+ A E YAE++ ALM +Y AE EDE+LTGN++N+ YL+RDN+RY +MKDR Sbjct: 986 GFDEFLDAAEERYEAYAERLGALMTYYSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDR 1045 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILL 116 I+ +V L E + W A C++ + +ASAWYHVTYHP E F SFPWI+ D LL Sbjct: 1046 IIAAVDALHAEVRGWLRA-CKEDDASRVASAWYHVTYHPDRRGE-KRFWSFPWIICDTLL 1103 Query: 115 HIKS 104 IK+ Sbjct: 1104 AIKA 1107 [7][TOP] >UniRef100_C4JBQ0 Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4JBQ0_MAIZE Length = 525 Score = 131 bits (330), Expect = 2e-29 Identities = 64/124 (51%), Positives = 85/124 (68%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GF+ FL+ A E YAE++ ALM +Y AE EDE+LTGN++N+ YL+RDN+RY +MKDR Sbjct: 384 GFDEFLDAAEERYEAYAERLGALMTYYSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDR 443 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILL 116 I+ +V L E + W A C++ + +ASAWYHVTYHP E F SFPWI+ D LL Sbjct: 444 IIAAVDALHAEVRGWLRA-CKEDDASRVASAWYHVTYHPDRRGE-KRFWSFPWIICDTLL 501 Query: 115 HIKS 104 IK+ Sbjct: 502 AIKA 505 [8][TOP] >UniRef100_B9FFL3 Putative uncharacterized protein n=2 Tax=Oryza sativa Japonica Group RepID=B9FFL3_ORYSJ Length = 335 Score = 128 bits (321), Expect = 2e-28 Identities = 62/124 (50%), Positives = 83/124 (66%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G + FL+ A + E+Y EK+T LM +Y AE EDE+LTGN++N+ YL+RDN+RY +MKDR Sbjct: 189 GSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDR 248 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILL 116 I+ +V L REA+ W + ++ + MASAWY VTYHP F SFPWI D LL Sbjct: 249 IVAAVDALHREARGWLLSSRKEEDASRMASAWYRVTYHPD-RRRGKRFWSFPWIACDNLL 307 Query: 115 HIKS 104 IK+ Sbjct: 308 AIKA 311 [9][TOP] >UniRef100_C5YA80 Putative uncharacterized protein Sb06g019330 n=1 Tax=Sorghum bicolor RepID=C5YA80_SORBI Length = 1128 Score = 128 bits (321), Expect = 2e-28 Identities = 63/124 (50%), Positives = 84/124 (67%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GF+ FL+TA E+YAEK+ LM +Y AE EDE+LTGN++N+ YL+RDN+RY +MKDR Sbjct: 987 GFDKFLDTAEEQYEVYAEKLGTLMTYYSAEHEDEILTGNIRNKLVYLRRDNKRYFEMKDR 1046 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILL 116 I+ +V L E + W A ++ + +ASAWYHVTYHP E F SFPW+ D LL Sbjct: 1047 IIAAVDALHAEVRGWLRAR-KEDDASKLASAWYHVTYHPDRRGE-KRFWSFPWVACDTLL 1104 Query: 115 HIKS 104 IK+ Sbjct: 1105 AIKA 1108 [10][TOP] >UniRef100_Q7XM31 Probable RNA-dependent RNA polymerase 2 n=1 Tax=Oryza sativa Japonica Group RepID=RDR2_ORYSJ Length = 1136 Score = 128 bits (321), Expect = 2e-28 Identities = 62/124 (50%), Positives = 83/124 (66%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G + FL+ A + E+Y EK+T LM +Y AE EDE+LTGN++N+ YL+RDN+RY +MKDR Sbjct: 990 GSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDR 1049 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILL 116 I+ +V L REA+ W + ++ + MASAWY VTYHP F SFPWI D LL Sbjct: 1050 IVAAVDALHREARGWLLSSRKEEDASRMASAWYRVTYHPD-RRRGKRFWSFPWIACDNLL 1108 Query: 115 HIKS 104 IK+ Sbjct: 1109 AIKA 1112 [11][TOP] >UniRef100_A2XUF4 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=A2XUF4_ORYSI Length = 1136 Score = 127 bits (320), Expect = 3e-28 Identities = 62/124 (50%), Positives = 83/124 (66%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G + FL+ A + E+Y EK+T LM +Y AE EDE+LTGN++N+ YL+RDN+RY +MKDR Sbjct: 990 GSDEFLQAAEEYYELYEEKLTTLMNYYRAEHEDEILTGNIRNKMLYLKRDNKRYFEMKDR 1049 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILL 116 I+ +V L REA+ W + ++ + MASAWY VTYHP F SFPWI D LL Sbjct: 1050 IVAAVDALHREARGWLLSSRKEEDASRMASAWYRVTYHPD-RRRGKRFWSFPWIACDNLL 1108 Query: 115 HIKS 104 IK+ Sbjct: 1109 AIKA 1112 [12][TOP] >UniRef100_A7P3W5 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7P3W5_VITVI Length = 1121 Score = 92.4 bits (228), Expect = 1e-17 Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 11/134 (8%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE ++ A +K Y K+ LM +YG +TE E+L+G++ + R + Sbjct: 968 GFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDA-----EA 1022 Query: 295 ILISVKDLQREAKEWF-----EADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFL 149 I ++VK L++EA+ WF E D + + A ASAWYHVTYHP Y Y+E FL Sbjct: 1023 IGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFL 1082 Query: 148 SFPWIVGDILLHIK 107 SFPW V D L+H K Sbjct: 1083 SFPWCVYDKLIHTK 1096 [13][TOP] >UniRef100_A5AM83 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5AM83_VITVI Length = 654 Score = 92.4 bits (228), Expect = 1e-17 Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 11/134 (8%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE ++ A +K Y K+ LM +YG +TE E+L+G++ + R + Sbjct: 501 GFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDA-----EA 555 Query: 295 ILISVKDLQREAKEWF-----EADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFL 149 I ++VK L++EA+ WF E D + + A ASAWYHVTYHP Y Y+E FL Sbjct: 556 IGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFL 615 Query: 148 SFPWIVGDILLHIK 107 SFPW V D L+H K Sbjct: 616 SFPWCVYDKLIHTK 629 [14][TOP] >UniRef100_B3SND7 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum RepID=B3SND7_GOSHI Length = 1110 Score = 90.5 bits (223), Expect = 5e-17 Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 13/142 (9%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKD- 299 GFE +++ A HK Y K+ LM +YG +TE E+L G + + +R +T +D Sbjct: 956 GFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGG-------IMKMSRSFTKKRDA 1008 Query: 298 -RILISVKDLQREAKEWF-----EADCQQHEYQAMASAWYHVTYHPKY---YHESSS--- 155 I ++V+ L++EA+ WF E D + + A ASAWY+VTYHP Y Y+E + Sbjct: 1009 EAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDH 1068 Query: 154 FLSFPWIVGDILLHIKSVNSKV 89 FLSFPW V D L+ IK + V Sbjct: 1069 FLSFPWCVYDKLIQIKKEKAAV 1090 [15][TOP] >UniRef100_B9HJH7 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9HJH7_POPTR Length = 1133 Score = 90.1 bits (222), Expect = 7e-17 Identities = 55/140 (39%), Positives = 80/140 (57%), Gaps = 13/140 (9%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKD- 299 GFE +++ A +K Y K+ LM++YG +TE ELL+G+ + ++ +T +D Sbjct: 978 GFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGS-------FMKMSKSFTKKRDA 1030 Query: 298 -RILISVKDLQREAKEWFE-----ADCQQHEYQAMASAWYHVTYHPKY---YHESSS--- 155 I ++V+ L++EA+ WF D Q + A ASAWYHVTYH Y Y+E + Sbjct: 1031 EAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRDH 1090 Query: 154 FLSFPWIVGDILLHIKSVNS 95 FLSFPW V D L+ IK NS Sbjct: 1091 FLSFPWCVYDKLIQIKRRNS 1110 [16][TOP] >UniRef100_A9T7J6 RNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T7J6_PHYPA Length = 843 Score = 89.7 bits (221), Expect = 9e-17 Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 9/137 (6%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G+E F++ A HK Y K+ LM YG ETE E ++G + N A ++ +R D+ +R Sbjct: 708 GYEEFIDMAKFHKNEYDRKLIGLMNQYGIETEAEAVSGYMLNLA---RQYVKRREDVVER 764 Query: 295 ILISVKDLQREAKEWFEA---DCQQHEYQAMASAWYHVTYHPKYYHESSS------FLSF 143 I +V+ L EA++ F+ D + A ASAWYHVTYHP++ S++ +SF Sbjct: 765 IRDAVRSLINEARQRFDENADDMVDDDIYAKASAWYHVTYHPEHIKVSATGRREVHLISF 824 Query: 142 PWIVGDILLHIKSVNSK 92 PW++ ++LL IK + Sbjct: 825 PWVIYNVLLQIKKAGGR 841 [17][TOP] >UniRef100_C1I213 RNA-dependent RNA polymerase n=1 Tax=Nicotiana glutinosa RepID=C1I213_NICGU Length = 1117 Score = 88.6 bits (218), Expect = 2e-16 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R D Sbjct: 968 GFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDA-----DA 1022 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFLSFPWI 134 I ++V+ L++EA+ WF+ + A ASAWYHVTYH Y Y+E F+SFPW Sbjct: 1023 IGVAVRSLRKEARTWFKRRSDIDDMLAKASAWYHVTYHHTYWGFYNEGLKRDHFISFPWC 1082 Query: 133 VGDILLHIKSVNSK 92 + D L+ IK ++ Sbjct: 1083 IYDQLIQIKKAKAR 1096 [18][TOP] >UniRef100_Q0KIK9 RNA-directed RNA polymerase, putative n=1 Tax=Solanum tuberosum RepID=Q0KIK9_SOLTU Length = 1050 Score = 88.2 bits (217), Expect = 3e-16 Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM++YG +TE E+L+G + + R + Sbjct: 901 GFEDYIDEAFDYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKTSKTFDRRKDA-----EA 955 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ESSSFLSFPWI 134 I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ + F+SFPW Sbjct: 956 ISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWC 1015 Query: 133 VGDILLHIKSVNSK 92 V D L+ IK ++ Sbjct: 1016 VYDQLIQIKKEKAR 1029 [19][TOP] >UniRef100_Q0KIR2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum demissum RepID=Q0KIR2_SOLDE Length = 963 Score = 87.8 bits (216), Expect = 3e-16 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 814 GFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDA-----EA 868 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ESSSFLSFPWI 134 I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ + F+SFPW Sbjct: 869 ISIAVRALRKEARTWFKRHNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWC 928 Query: 133 VGDILLHIKSVNSK 92 V D L+ IK ++ Sbjct: 929 VYDQLIQIKKEKAR 942 [20][TOP] >UniRef100_Q6L447 RNA-directed RNA polymerase-like, putative n=1 Tax=Solanum demissum RepID=Q6L447_SOLDE Length = 1137 Score = 87.4 bits (215), Expect = 4e-16 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 988 GFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDA-----EA 1042 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ESSSFLSFPWI 134 I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ + F+SFPW Sbjct: 1043 ISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWC 1102 Query: 133 VGDILLHIKSVNSK 92 V D L+ IK ++ Sbjct: 1103 VYDQLIQIKKEKAR 1116 [21][TOP] >UniRef100_Q6L3W8 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum RepID=Q6L3W8_SOLDE Length = 1139 Score = 87.4 bits (215), Expect = 4e-16 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 9/140 (6%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 990 GFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDA-----EA 1044 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ESSSFLSFPWI 134 I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ + F+SFPW Sbjct: 1045 ISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWC 1104 Query: 133 VGDILLHI---KSVNSKVLS 83 V D L+ I K++N VL+ Sbjct: 1105 VYDQLIQIKKEKALNRPVLN 1124 [22][TOP] >UniRef100_Q6L3P3 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum RepID=Q6L3P3_SOLDE Length = 1021 Score = 87.4 bits (215), Expect = 4e-16 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 872 GFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDA-----EA 926 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ESSSFLSFPWI 134 I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ + F+SFPW Sbjct: 927 ISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWC 986 Query: 133 VGDILLHIKSVNSK 92 V D L+ IK ++ Sbjct: 987 VYDQLIQIKKEKAR 1000 [23][TOP] >UniRef100_Q9ZR58 RNA-directed RNA polymerase n=1 Tax=Solanum lycopersicum RepID=Q9ZR58_SOLLC Length = 1114 Score = 87.0 bits (214), Expect = 6e-16 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 6/129 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 965 GFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDA-----EA 1019 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ESSSFLSFPWI 134 I ++V+ L++EA+ WF+ + ASAWYHVTYHP Y+ + + F+SFPW Sbjct: 1020 ISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFISFPWC 1079 Query: 133 VGDILLHIK 107 V D L+ IK Sbjct: 1080 VYDQLIQIK 1088 [24][TOP] >UniRef100_Q6L3V2 RNA dependent RNA polymerase family protein n=1 Tax=Solanum demissum RepID=Q6L3V2_SOLDE Length = 963 Score = 87.0 bits (214), Expect = 6e-16 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 814 GFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDA-----EA 868 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ESSSFLSFPWI 134 I ++V+ L++EA+ WF+ + ASAWYHVTYHP Y+ + F+SFPW Sbjct: 869 ISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWC 928 Query: 133 VGDILLHIKSVNSK 92 V D L+ IK ++ Sbjct: 929 VYDQLIQIKKEKAR 942 [25][TOP] >UniRef100_Q6L3P6 RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum RepID=Q6L3P6_SOLDE Length = 1180 Score = 87.0 bits (214), Expect = 6e-16 Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 9/140 (6%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 1031 GFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDA-----EA 1085 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ESSSFLSFPWI 134 I ++V+ L++EA+ WF+ + ASAWYHVTYHP Y+ + F+SFPW Sbjct: 1086 ISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWC 1145 Query: 133 VGDILLHI---KSVNSKVLS 83 V D L+ I K++N VL+ Sbjct: 1146 VYDQLIQIKKEKALNRPVLN 1165 [26][TOP] >UniRef100_A4UV17 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum RepID=A4UV17_SOLTU Length = 1115 Score = 87.0 bits (214), Expect = 6e-16 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 966 GFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDA-----EA 1020 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYH------ESSSFLSFPWI 134 I ++V+ L++EA+ WF+ + ASAWYHVTYHP Y+ + F+SFPW Sbjct: 1021 ISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWC 1080 Query: 133 VGDILLHIKSVNSK 92 V D L+ IK ++ Sbjct: 1081 VYDQLIQIKKEKAR 1094 [27][TOP] >UniRef100_Q9ZRY7 RNA-directed RNA polymerase n=1 Tax=Nicotiana tabacum RepID=Q9ZRY7_TOBAC Length = 1116 Score = 86.3 bits (212), Expect = 1e-15 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 967 GFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDA-----EA 1021 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFLSFPWI 134 I ++V+ L++EA+ WF+ + A ASAWYHVTYH Y Y+E F+SFPW Sbjct: 1022 IGVAVRCLRKEARAWFKRRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWC 1081 Query: 133 VGDILLHIKSVNSK 92 V D L+ IK ++ Sbjct: 1082 VYDQLIQIKKAKAR 1095 [28][TOP] >UniRef100_A4UBI7 Putative RNA-directed RNA polymerase 1 n=1 Tax=Nicotiana attenuata RepID=A4UBI7_9SOLA Length = 1044 Score = 85.9 bits (211), Expect = 1e-15 Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE + + A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 895 GFEDYTDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGVMKASKTFDRRKDA-----EA 949 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFLSFPWI 134 I ++V+ L++EA+ WF+ + A ASAWYHVTYH Y Y+E F+SFPW Sbjct: 950 IGVAVRSLRKEARTWFKKRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLRRDHFISFPWC 1009 Query: 133 VGDILLHIKSVNSK 92 V D L+ IK ++ Sbjct: 1010 VYDQLIQIKKAKAR 1023 [29][TOP] >UniRef100_Q6RFH9 RNA-directed RNA polymerase 2 n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q6RFH9_HORVD Length = 1115 Score = 84.7 bits (208), Expect = 3e-15 Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 13/140 (9%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G++ ++ A K Y K+ LM+ YG ++E E+++G + A + + D Sbjct: 963 GYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDA-----DA 1017 Query: 295 ILISVKDLQREAKEWFE-------ADCQQHEYQAMASAWYHVTYHPKYY------HESSS 155 I ++VK L++EA+ WF D + Y A ASAWYHVTYHP+YY +E Sbjct: 1018 IRLAVKSLRKEARSWFSDMSADESGDVHEASY-AKASAWYHVTYHPEYYGCYNKIYERPH 1076 Query: 154 FLSFPWIVGDILLHIKSVNS 95 +SFPW V D LLHIK S Sbjct: 1077 LISFPWCVYDKLLHIKQRKS 1096 [30][TOP] >UniRef100_B5M059 RNA-directed RNA polymerase 1a (Fragment) n=1 Tax=Hordeum vulgare RepID=B5M059_HORVU Length = 1114 Score = 84.7 bits (208), Expect = 3e-15 Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 13/140 (9%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G++ ++ A K Y K+ LM+ YG ++E E+++G + A + + D Sbjct: 963 GYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDA-----DA 1017 Query: 295 ILISVKDLQREAKEWFE-------ADCQQHEYQAMASAWYHVTYHPKYY------HESSS 155 I ++VK L++EA+ WF D + Y A ASAWYHVTYHP+YY +E Sbjct: 1018 IRLAVKSLRKEARSWFSDMSADESGDVHEASY-AKASAWYHVTYHPEYYGCYNKIYERPH 1076 Query: 154 FLSFPWIVGDILLHIKSVNS 95 +SFPW V D LLHIK S Sbjct: 1077 LISFPWCVYDKLLHIKQRKS 1096 [31][TOP] >UniRef100_A5ATA5 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5ATA5_VITVI Length = 697 Score = 84.7 bits (208), Expect = 3e-15 Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 11/134 (8%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE ++ A +K Y K+ +LM YG TE E+L+G+L + D R+ + Sbjct: 510 GFEDYVRDAFYYKSQYDFKLGSLMDCYGIRTESEILSGSLMKMSKSF--DKRKDA---EA 564 Query: 295 ILISVKDLQREAKEWFE-----ADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFL 149 I ++V+ L++EA+ WF + A+ASAWYHVTYHP Y Y+E FL Sbjct: 565 IALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFL 624 Query: 148 SFPWIVGDILLHIK 107 SFPW V D L+ IK Sbjct: 625 SFPWCVYDKLIQIK 638 [32][TOP] >UniRef100_Q9ZRX3 RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY Length = 775 Score = 84.0 bits (206), Expect = 5e-15 Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 6/123 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y +K+ LM +YG +TE E L+G + + D RR + Sbjct: 658 GFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASKTF--DRRRDAEA--- 712 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFLSFPWI 134 I ++V+ L++EA+ WF+ + A ASAWYHV YHP Y Y+E F+SFPW Sbjct: 713 IGVAVRSLRKEARTWFKRRSDIDDLLAKASAWYHVAYHPTYWGCYNEGLKRDHFISFPWC 772 Query: 133 VGD 125 V D Sbjct: 773 VYD 775 [33][TOP] >UniRef100_B9HJH5 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9HJH5_POPTR Length = 1139 Score = 83.6 bits (205), Expect = 6e-15 Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 7/130 (5%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GF+ ++ A +K +Y K+ +M +YG +TE E+++G++ + R + D Sbjct: 988 GFQKHIDEAFHYKSVYDNKLGNMMDYYGIKTEAEIISGSIMKVGKSFDK-KRDF----DS 1042 Query: 295 ILISVKDLQREAKEWF-EADCQQHEYQAMASAWYHVTYHPKY---YHESSS---FLSFPW 137 I S++ L+++A+ WF E+D + A ASAWY+VTYHP Y Y+E + FLSFPW Sbjct: 1043 INYSIRSLRKQARAWFDESDNSPDDLYAKASAWYYVTYHPSYWGRYNEGMNRVHFLSFPW 1102 Query: 136 IVGDILLHIK 107 D L+ IK Sbjct: 1103 CFYDKLIDIK 1112 [34][TOP] >UniRef100_B2B9K0 RNA-dependent RNA polymerase n=1 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI Length = 1110 Score = 82.4 bits (202), Expect = 1e-14 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 13/136 (9%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GF +++ A +K Y K+ LM +YG +TE E+L+G + + R +T +D Sbjct: 956 GFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMS-------RSFTKKRDA 1008 Query: 295 --ILISVKDLQREAKEWF-----EADCQQHEYQAMASAWYHVTYHPKY---YHESSS--- 155 I ++V+ L++EA+ WF E D + + A ASAWY+VTYH Y Y+E + Sbjct: 1009 ESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNEGMNRDH 1068 Query: 154 FLSFPWIVGDILLHIK 107 FLSFPW V D L+ IK Sbjct: 1069 FLSFPWCVYDKLIQIK 1084 [35][TOP] >UniRef100_Q75ZN6 RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata RepID=Q75ZN6_VIGUN Length = 257 Score = 80.9 bits (198), Expect = 4e-14 Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 6/129 (4%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GF +++ A HK Y K+ LM +YG +TE E+L+GN+ + + RR + ++ Sbjct: 125 GFLDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIIKLSKCFNK--RRDAEAINK 182 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFLSFPWI 134 +V L+++A+ WF + A ASAWYHVTYHP Y Y++ +LSFPW Sbjct: 183 ---AVTSLRKDARSWFNEGNNGDDEYAKASAWYHVTYHPSYWGCYNQGMGRDHYLSFPWC 239 Query: 133 VGDILLHIK 107 V LL IK Sbjct: 240 VFPQLLQIK 248 [36][TOP] >UniRef100_UPI000198295F PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI000198295F Length = 1109 Score = 80.5 bits (197), Expect = 5e-14 Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 11/134 (8%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE ++ A +K Y K+ +LM G TE E+L+G++ + D R+ + Sbjct: 966 GFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSF--DKRKDAEA--- 1020 Query: 295 ILISVKDLQREAKEWFE-----ADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFL 149 I ++V+ L++EA+ WF + A+ASAWYHVTYHP Y Y+E FL Sbjct: 1021 IALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFL 1080 Query: 148 SFPWIVGDILLHIK 107 SFPW V D L+ IK Sbjct: 1081 SFPWCVYDKLIQIK 1094 [37][TOP] >UniRef100_A7P3W3 Chromosome chr1 scaffold_5, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7P3W3_VITVI Length = 1076 Score = 80.5 bits (197), Expect = 5e-14 Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 11/134 (8%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE ++ A +K Y K+ +LM G TE E+L+G++ + D R+ + Sbjct: 933 GFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSF--DKRKDAEA--- 987 Query: 295 ILISVKDLQREAKEWFE-----ADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFL 149 I ++V+ L++EA+ WF + A+ASAWYHVTYHP Y Y+E FL Sbjct: 988 IALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFL 1047 Query: 148 SFPWIVGDILLHIK 107 SFPW V D L+ IK Sbjct: 1048 SFPWCVYDKLIQIK 1061 [38][TOP] >UniRef100_Q9LQV2 F10B6.19 n=1 Tax=Arabidopsis thaliana RepID=Q9LQV2_ARATH Length = 1107 Score = 79.3 bits (194), Expect = 1e-13 Identities = 50/134 (37%), Positives = 71/134 (52%), Gaps = 8/134 (5%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A K Y K+ LM +YG +TE E+L+G + R ++ +T +D Sbjct: 961 GFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM-------RMSKSFTKRRDA 1013 Query: 295 ILI--SVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFLSFP 140 I +V+ L++E F A ++ A ASAWYHVTYH Y Y+E FLSF Sbjct: 1014 ESIGRAVRALRKETLSLFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFA 1073 Query: 139 WIVGDILLHIKSVN 98 W V D L+ IK N Sbjct: 1074 WCVYDKLVRIKKTN 1087 [39][TOP] >UniRef100_Q8H1K9 RNA-dependent RNA polymerase 1 n=1 Tax=Arabidopsis thaliana RepID=Q8H1K9_ARATH Length = 1107 Score = 79.3 bits (194), Expect = 1e-13 Identities = 50/134 (37%), Positives = 71/134 (52%), Gaps = 8/134 (5%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A K Y K+ LM +YG +TE E+L+G + R ++ +T +D Sbjct: 961 GFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM-------RMSKSFTKRRDA 1013 Query: 295 ILI--SVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKY---YHES---SSFLSFP 140 I +V+ L++E F A ++ A ASAWYHVTYH Y Y+E FLSF Sbjct: 1014 ESIGRAVRALRKETLSLFNASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFA 1073 Query: 139 WIVGDILLHIKSVN 98 W V D L+ IK N Sbjct: 1074 WCVYDKLVRIKKTN 1087 [40][TOP] >UniRef100_Q9SG02 Putative RNA-directed RNA polymerase; 73997-69985 n=1 Tax=Arabidopsis thaliana RepID=Q9SG02_ARATH Length = 1196 Score = 78.2 bits (191), Expect = 3e-13 Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE + A HK +Y ++ L+ Y + E+E++TG++ + Y +++ ++K+R Sbjct: 1030 GFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYT---SKKQGELKER 1086 Query: 295 ILISVKDLQREAKEWFEADCQQHE----------YQAMASAWYHVTYHPKYYHES----- 161 + S L++E ++ FE HE Y+ ASAWYHVTYHP++ +S Sbjct: 1087 LKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQD 1146 Query: 160 ------SSFLSFPWIVGDILLHIK 107 ++ LSF WI D L IK Sbjct: 1147 PDESSHAAMLSFAWIAADYLARIK 1170 [41][TOP] >UniRef100_B9HVU2 Rna-dependent RNA polymerase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HVU2_POPTR Length = 1102 Score = 77.4 bits (189), Expect = 5e-13 Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 11/134 (8%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GF+ ++ A +K Y K+ +M +YG +TE E++ G + R R + KD Sbjct: 975 GFKDYINEAFYYKSEYDNKLGNMMDYYGIKTEAEIIGG-------CIMRMGRSFDKKKDL 1027 Query: 295 --ILISVKDLQREAKEWFEADCQQH---EYQAMASAWYHVTYHPKY---YHESSS---FL 149 I SV L+++A+ WF + + ASAWYHVTYHP++ Y+E FL Sbjct: 1028 EGINFSVSSLRKQARAWFNESGSKESPDDVYRKASAWYHVTYHPRFWGLYNEGMDRVHFL 1087 Query: 148 SFPWIVGDILLHIK 107 SFPW V D L IK Sbjct: 1088 SFPWCVHDKLFEIK 1101 [42][TOP] >UniRef100_Q9LKP0 RNA-dependent RNA polymerase n=1 Tax=Arabidopsis thaliana RepID=Q9LKP0_ARATH Length = 1196 Score = 77.0 bits (188), Expect = 6e-13 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE + A HK Y ++ L+ Y + E+E++TG++ + Y +++ ++K+R Sbjct: 1030 GFEDLIPEAWGHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYT---SKKQGELKER 1086 Query: 295 ILISVKDLQREAKEWFEADCQQHE----------YQAMASAWYHVTYHPKYYHES----- 161 + S L++E ++ FE HE Y+ ASAWYHVTYHP++ +S Sbjct: 1087 LKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQD 1146 Query: 160 ------SSFLSFPWIVGDILLHIK 107 ++ LSF WI D L IK Sbjct: 1147 PDESSHAAMLSFAWIAADYLARIK 1170 [43][TOP] >UniRef100_Q6RFI0 RNA-directed RNA polymerase 1 n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q6RFI0_HORVD Length = 1115 Score = 76.3 bits (186), Expect = 1e-12 Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 13/136 (9%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G++ ++ A KE Y K+ LM+ YG +E E+++G + A + + D Sbjct: 962 GYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSDA-----DA 1016 Query: 295 ILISVKDLQREAKEWF------EADCQQHEYQAMASAWYHVTYHPKY-------YHESSS 155 I ++VK L++EA+ WF E+ A ASAWYHVTYHP+Y Y Sbjct: 1017 IRLAVKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHPQYWGCYNEGYDHRPH 1076 Query: 154 FLSFPWIVGDILLHIK 107 +SFPW V D L+ IK Sbjct: 1077 LISFPWCVYDKLILIK 1092 [44][TOP] >UniRef100_C7F747 Putative RNA-dependent RNA polymerase n=1 Tax=Zea mays RepID=C7F747_MAIZE Length = 1108 Score = 76.3 bits (186), Expect = 1e-12 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 10/133 (7%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G+E ++ A KE Y ++ LM YG ++E E+++G + A + + D Sbjct: 965 GYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCILKMAKNFTKSSDA-----DA 1019 Query: 295 ILISVKDLQREAKEWFE----ADCQQHEYQAMASAWYHVTYHPKYY------HESSSFLS 146 I ++V+ L++EA+ WF + Q +A ASAWYHVTYH +Y+ ++ +S Sbjct: 1020 IRMAVRSLRKEARSWFNEMSTGEDGQDAMEAKASAWYHVTYHQQYWGSYNEGYDRPHLIS 1079 Query: 145 FPWIVGDILLHIK 107 FPW V D L+ IK Sbjct: 1080 FPWCVYDKLVAIK 1092 [45][TOP] >UniRef100_B5M060 RNA-directed RNA polymerase 1b n=1 Tax=Hordeum vulgare RepID=B5M060_HORVU Length = 1115 Score = 76.3 bits (186), Expect = 1e-12 Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 13/136 (9%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G++ ++ A KE Y K+ LM+ YG +E E+++G + A + + D Sbjct: 962 GYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSDA-----DA 1016 Query: 295 ILISVKDLQREAKEWF------EADCQQHEYQAMASAWYHVTYHPKY-------YHESSS 155 I ++VK L++EA+ WF E+ A ASAWYHVTYHP+Y Y Sbjct: 1017 IRLAVKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHPQYWGCYNKGYDHRPH 1076 Query: 154 FLSFPWIVGDILLHIK 107 +SFPW V D L+ IK Sbjct: 1077 LISFPWCVYDKLILIK 1092 [46][TOP] >UniRef100_C5XZ94 Putative uncharacterized protein Sb04g028630 n=1 Tax=Sorghum bicolor RepID=C5XZ94_SORBI Length = 1114 Score = 75.5 bits (184), Expect = 2e-12 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 10/133 (7%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G+E ++ A KE Y ++ LM YG ++E E+++G A + + D Sbjct: 965 GYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCFLKMAKNFTKSSDA-----DA 1019 Query: 295 ILISVKDLQREAKEWFE----ADCQQHEYQAMASAWYHVTYHPKYY------HESSSFLS 146 I ++V+ L++EA+ WF ++ Q +A ASAWYHVTY P+Y+ ++ +S Sbjct: 1020 IRMAVRSLRKEARSWFNEMSTSEDDQDATEAKASAWYHVTYDPQYWGNYNEGYDRPHLIS 1079 Query: 145 FPWIVGDILLHIK 107 FPW V D L+ IK Sbjct: 1080 FPWCVYDKLVIIK 1092 [47][TOP] >UniRef100_B9F2V8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9F2V8_ORYSJ Length = 1027 Score = 74.3 bits (181), Expect = 4e-12 Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 12/135 (8%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G+E ++ A + K+ Y K+ LM YG ++E E+++G + A + + D Sbjct: 877 GYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDA-----DA 931 Query: 295 ILISVKDLQREAKEWFEA---DCQQHEY---QAMASAWYHVTYHPKYY------HESSSF 152 I ++V+ L++EA+ F D H + +A ASAWYHVTYHP+++ +E F Sbjct: 932 IRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHF 991 Query: 151 LSFPWIVGDILLHIK 107 +SFPW + + LL IK Sbjct: 992 ISFPWCIYEKLLRIK 1006 [48][TOP] >UniRef100_A2X9D0 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=A2X9D0_ORYSI Length = 1067 Score = 74.3 bits (181), Expect = 4e-12 Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 12/135 (8%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G+E ++ A + K+ Y K+ LM YG ++E E+++G + A + + D Sbjct: 917 GYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDA-----DA 971 Query: 295 ILISVKDLQREAKEWFEA---DCQQHEY---QAMASAWYHVTYHPKYY------HESSSF 152 I ++V+ L++EA+ F D H + +A ASAWYHVTYHP+++ +E F Sbjct: 972 IRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHF 1031 Query: 151 LSFPWIVGDILLHIK 107 +SFPW + + LL IK Sbjct: 1032 ISFPWCIYEKLLRIK 1046 [49][TOP] >UniRef100_Q0DXS3 Probable RNA-dependent RNA polymerase 1 n=1 Tax=Oryza sativa Japonica Group RepID=RDR1_ORYSJ Length = 740 Score = 74.3 bits (181), Expect = 4e-12 Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 12/135 (8%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G+E ++ A + K+ Y K+ LM YG ++E E+++G + A + + D Sbjct: 590 GYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDA-----DA 644 Query: 295 ILISVKDLQREAKEWFEA---DCQQHEY---QAMASAWYHVTYHPKYY------HESSSF 152 I ++V+ L++EA+ F D H + +A ASAWYHVTYHP+++ +E F Sbjct: 645 IRLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHF 704 Query: 151 LSFPWIVGDILLHIK 107 +SFPW + + LL IK Sbjct: 705 ISFPWCIYEKLLRIK 719 [50][TOP] >UniRef100_A4UV46 Putative RNA-dependent RNA-polymerase n=1 Tax=Solanum tuberosum RepID=A4UV46_SOLTU Length = 1065 Score = 73.9 bits (180), Expect = 5e-12 Identities = 37/102 (36%), Positives = 57/102 (55%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 GFE +++ A +K Y K+ LM +YG +TE E+L+G + + R + Sbjct: 965 GFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDA-----EA 1019 Query: 295 ILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYY 170 I I+V+ L++EA+ WF+ + ASAWYHVTYHP Y+ Sbjct: 1020 ISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYW 1061 [51][TOP] >UniRef100_B8A9C4 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=B8A9C4_ORYSI Length = 307 Score = 71.2 bits (173), Expect = 3e-11 Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G FL +A K Y +++AL+ Y TE EL+TG++ S ++ +++ D+KDR Sbjct: 141 GASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TSLVKNSSKKQGDIKDR 197 Query: 295 ILISVKDLQREAKEWFEA----DCQQHE------YQAMASAWYHVTYHPKYYHESSSF-- 152 + + L++E K FE+ C+ + Y+ ASAWY VTYHPK+ +S Sbjct: 198 LKTAYSALRKEFKSTFESIASDQCEIDDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILG 257 Query: 151 ---------LSFPWIVGDILLHIK 107 LSF WI D L IK Sbjct: 258 PDGEEIPASLSFAWIPVDYLARIK 281 [52][TOP] >UniRef100_UPI0000DD8B5B Os01g0527600 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000DD8B5B Length = 385 Score = 68.6 bits (166), Expect = 2e-10 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G FL +A K Y +++AL+ Y TE EL+TG++ ++ +++ D+KDR Sbjct: 219 GASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TFLVKNSSKKQGDIKDR 275 Query: 295 ILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYYHESSSF-- 152 + + L++E K FE+ D + Y+ ASAWY VTYHPK+ +S Sbjct: 276 LKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILG 335 Query: 151 ---------LSFPWIVGDILLHIK 107 LSF WI D L IK Sbjct: 336 PDGEEIPASLSFAWIPVDYLARIK 359 [53][TOP] >UniRef100_B9EXA5 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9EXA5_ORYSJ Length = 1571 Score = 68.6 bits (166), Expect = 2e-10 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G FL +A K Y +++AL+ Y TE EL+TG++ ++ +++ D+KDR Sbjct: 1405 GASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TFLVKNSSKKQGDIKDR 1461 Query: 295 ILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYYHESSSF-- 152 + + L++E K FE+ D + Y+ ASAWY VTYHPK+ +S Sbjct: 1462 LKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILG 1521 Query: 151 ---------LSFPWIVGDILLHIK 107 LSF WI D L IK Sbjct: 1522 PDGEEIPASLSFAWIPVDYLARIK 1545 [54][TOP] >UniRef100_Q8LHH9 Probable RNA-dependent RNA polymerase SHL2 n=1 Tax=Oryza sativa Japonica Group RepID=SHL2_ORYSJ Length = 1218 Score = 68.6 bits (166), Expect = 2e-10 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G FL +A K Y +++AL+ Y TE EL+TG++ ++ +++ D+KDR Sbjct: 1052 GASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TFLVKNSSKKQGDIKDR 1108 Query: 295 ILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYYHESSSF-- 152 + + L++E K FE+ D + Y+ ASAWY VTYHPK+ +S Sbjct: 1109 LKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILG 1168 Query: 151 ---------LSFPWIVGDILLHIK 107 LSF WI D L IK Sbjct: 1169 PDGEEIPASLSFAWIPVDYLARIK 1192 [55][TOP] >UniRef100_C5Z764 Putative uncharacterized protein Sb10g025950 n=1 Tax=Sorghum bicolor RepID=C5Z764_SORBI Length = 1239 Score = 68.2 bits (165), Expect = 3e-10 Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 13/136 (9%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G +FLE A K +Y ++ L+ YG +E EL+TG + Y N+ +K+R Sbjct: 1090 GALSFLEDAWQCKCLYEAQLNTLLSQYGLRSEAELVTGEIWPLVGY----NKYQYQLKER 1145 Query: 295 ILISVKDLQREAKEWFEA------DCQQHEYQAMASAWYHVTYHPKYY-------HESSS 155 I + L +E + FE+ D + Y+ ASAWY VTYHP++ ++ + Sbjct: 1146 INYAYSKLHQEFRSIFESIDISYCDNKNLAYEMKASAWYQVTYHPEFIRLREPDDEKTPA 1205 Query: 154 FLSFPWIVGDILLHIK 107 LSF WI D L IK Sbjct: 1206 RLSFAWIAVDYLAQIK 1221 [56][TOP] >UniRef100_C5Z766 Putative uncharacterized protein Sb10g025970 n=1 Tax=Sorghum bicolor RepID=C5Z766_SORBI Length = 1251 Score = 67.8 bits (164), Expect = 4e-10 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 14/137 (10%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYT-DMKD 299 G +FLE A K +Y ++ L+ +G +E EL+TG + + Y N++Y +K+ Sbjct: 1110 GALSFLEDAWKCKCLYEAQLNTLLNQFGVHSEAELVTGEIWSLVGY----NKKYQYQLKE 1165 Query: 298 RILISVKDLQREAKEWFEA------DCQQHEYQAMASAWYHVTYHPKYY-------HESS 158 R+ + L +E + FE+ D + Y+ ASAWY VTYHP++ ++ Sbjct: 1166 RLNYAYSKLHQEFRSIFESIDVSYGDSKNLAYEMKASAWYQVTYHPEFIRLRELDDEKTP 1225 Query: 157 SFLSFPWIVGDILLHIK 107 + LSF WI D L IK Sbjct: 1226 ARLSFAWIPVDYLAQIK 1242 [57][TOP] >UniRef100_B9HA49 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9HA49_POPTR Length = 1198 Score = 65.5 bits (158), Expect = 2e-09 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 21/150 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G F+ A K Y ++ L+ Y + E+E++TG++ S + +R+ D+K+R Sbjct: 1032 GATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVW---SMPKGSSRKQGDLKER 1088 Query: 295 ILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYYHES----- 161 + S L+RE ++ FE D + Y+ ASAWY VTYHP + +S Sbjct: 1089 LKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLELQD 1148 Query: 160 ------SSFLSFPWIVGDILLHIKSVNSKV 89 S LSF WI D L IK +S++ Sbjct: 1149 SDGAGISVMLSFAWIAADYLARIKIRHSRI 1178 [58][TOP] >UniRef100_B4FZU3 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FZU3_MAIZE Length = 552 Score = 65.5 bits (158), Expect = 2e-09 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G FL +A K Y ++ AL+ YG TE EL+T ++ + Y +RR D+K+R Sbjct: 386 GAADFLSSAWQCKCSYETQLNALLNQYGVRTEAELVTEHIWSLPKY---SSRRQGDIKER 442 Query: 295 ILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYYHESSSF-- 152 + + L +E + FE+ D + Y+ ASAWY VTYHP++ +S Sbjct: 443 LKNAYYALHKEFRSIFESIVTDQTEISDDEKSRFYEMKASAWYQVTYHPEWVQKSREMFK 502 Query: 151 ---------LSFPWIVGDILLHIK 107 LSF WI + L IK Sbjct: 503 SDCEDMPARLSFAWIAVEHLARIK 526 [59][TOP] >UniRef100_B6DZR9 RNA-directed RNA polymerase 6a (Fragment) n=1 Tax=Hordeum vulgare RepID=B6DZR9_HORVU Length = 1047 Score = 64.7 bits (156), Expect = 3e-09 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 27/150 (18%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G FL +A K Y ++ AL+K YG TE EL+T ++ + Y ++R+ D+K+R Sbjct: 875 GAADFLSSAWQCKCSYEAQLDALLKQYGVRTEAELVTEHIWSLPKY---NSRKQGDIKER 931 Query: 295 ILISVKDLQREAKEWFEA--------------DCQQHEYQAMASAWYHVTYHPKYYHES- 161 + + L++E + FE+ D + Y+ ASAWY VTYHPK+ S Sbjct: 932 LKNAYSALRKEYRAIFESVEAPGQAKAVALDDDERNRVYEMKASAWYQVTYHPKWVERSR 991 Query: 160 ------------SSFLSFPWIVGDILLHIK 107 + LSF WI + L IK Sbjct: 992 EALLEPDREEDTPARLSFAWIPVEHLARIK 1021 [60][TOP] >UniRef100_B9IKW9 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR Length = 1200 Score = 63.9 bits (154), Expect = 5e-09 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G ++ A K Y ++ L+ Y + E+E++TG++ + Y +R+ ++KDR Sbjct: 1034 GASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKY---SSRKQGELKDR 1090 Query: 295 ILISVKDLQREAKEWFEADCQQHE----------YQAMASAWYHVTYHPKYYHES----- 161 + S L++E ++ FE + E Y+ ASAWY V YHP + +S Sbjct: 1091 LKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLELQD 1150 Query: 160 ------SSFLSFPWIVGDILLHIK 107 S LSF WI D L IK Sbjct: 1151 PDGAGTSVMLSFAWIAADYLARIK 1174 [61][TOP] >UniRef100_C5XM68 Putative uncharacterized protein Sb03g022880 n=1 Tax=Sorghum bicolor RepID=C5XM68_SORBI Length = 1207 Score = 63.2 bits (152), Expect = 9e-09 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G FL +A K Y ++ AL+ YG TE EL+T ++ + Y +R+ D+K+R Sbjct: 1041 GATDFLSSAWECKCSYETQLNALLNQYGVRTEAELVTEHIWSLPKY---SSRKQGDIKER 1097 Query: 295 ILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYYHESSSF-- 152 + + L ++ + FE+ D + Y+ ASAWY VTYHPK+ +S Sbjct: 1098 LKNAYSALHKDFRSIFESFVTDQTEISDDEKIRFYEMKASAWYQVTYHPKWVQKSREMLK 1157 Query: 151 ---------LSFPWIVGDILLHIK 107 LSF WI + L IK Sbjct: 1158 PDFEDMPARLSFAWIGVEHLARIK 1181 [62][TOP] >UniRef100_C3Z737 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z737_BRAFL Length = 1492 Score = 63.2 bits (152), Expect = 9e-09 Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 11/132 (8%) Frame = -3 Query: 469 EAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDRIL 290 + + A + Y +++ LM YG ETE E ++G + ++ DNR +R+ Sbjct: 1067 QRYKRQAEQSRGRYNDQLKYLMDRYGIETEAEAMSGCIGRIHKHM--DNRYDRHEVERVF 1124 Query: 289 IS-VKDLQREAKEWF------EADCQQHEY----QAMASAWYHVTYHPKYYHESSSFLSF 143 +KDL+R +E F E + ++ +Y QA ASAWY VTY + LSF Sbjct: 1125 KERIKDLRRRTREEFFVEFGGEKNVKKSDYPPEVQAKASAWYVVTYSDA---NENRLLSF 1181 Query: 142 PWIVGDILLHIK 107 PWIVGDIL IK Sbjct: 1182 PWIVGDILAVIK 1193 [63][TOP] >UniRef100_B9RP51 RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO Length = 1203 Score = 61.6 bits (148), Expect = 3e-08 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G ++ A K Y ++ L+ Y + E+E++TG++ S + ++R+ ++K+R Sbjct: 1037 GSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIW---SMPKCNSRKQGELKER 1093 Query: 295 ILISVKDLQREAKEWFEADCQQHE----------YQAMASAWYHVTYHPKYYHES----- 161 + S L++E ++ FE E Y+ ASAWY V YHPK+ ++S Sbjct: 1094 LKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMELQE 1153 Query: 160 ------SSFLSFPWIVGDILLHIK 107 +S LSF WI D L IK Sbjct: 1154 PDAAGCASMLSFAWIAADYLARIK 1177 [64][TOP] >UniRef100_C3ZPA8 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZPA8_BRAFL Length = 1867 Score = 61.6 bits (148), Expect = 3e-08 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 16/141 (11%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTG---NLQNRASYLQRDNRRYTDM 305 GF++++E A + +Y M ++M YG +E E+++G ++ R L+ N R+ ++ Sbjct: 977 GFDSYIEDAQTQLNIYNNMMMSIMSLYGITSEGEVVSGCILKVKQRLGLLK--NERF-EV 1033 Query: 304 KDRILISVKDLQREAK---------EWFEADCQQHEYQAMASAWYHVTYHPKY----YHE 164 + + K L R+ + E + ++ E ASAWY VTY Y + Sbjct: 1034 TEYVRARFKTLWRKTRAEFFKQFDVEELSEERRKEEQLKRASAWYMVTYSDAYDEKPHDP 1093 Query: 163 SSSFLSFPWIVGDILLHIKSV 101 S LSFPW+V D+L +K + Sbjct: 1094 SPKLLSFPWVVYDVLASLKKI 1114 [65][TOP] >UniRef100_A7P5T3 Chromosome chr4 scaffold_6, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7P5T3_VITVI Length = 1197 Score = 61.2 bits (147), Expect = 3e-08 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 22/145 (15%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G F+ A HK Y ++ L+ Y + E+E++TG++ + Y +R+ ++ +R Sbjct: 1030 GSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKY---KSRKQGELTER 1086 Query: 295 ILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYYHESSS--- 155 + + L++E ++ FE D + Y+ ASAWY VTYHP + +S Sbjct: 1087 LKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQN 1146 Query: 154 ---------FLSFPWIVGDILLHIK 107 LSF WI D L IK Sbjct: 1147 PDEVFGERVMLSFAWITADYLARIK 1171 [66][TOP] >UniRef100_A9CRC9 RNA-dependent RNA polymerase 6 n=1 Tax=Nicotiana tabacum RepID=A9CRC9_TOBAC Length = 1197 Score = 60.5 bits (145), Expect = 6e-08 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G AF++ A + K Y ++ L+ Y E+E++TG++ + Y ++ ++K+R Sbjct: 1031 GSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKY---SAKKQGELKER 1087 Query: 295 ILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYYHES----- 161 + + L++E + FE D + Y+ ASAWY VTYHP + S Sbjct: 1088 LKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQL 1147 Query: 160 ------SSFLSFPWIVGDILLHIK 107 + LSF WI D L IK Sbjct: 1148 PDAVSNTVMLSFAWIAADYLARIK 1171 [67][TOP] >UniRef100_C3Z3S5 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z3S5_BRAFL Length = 1922 Score = 60.5 bits (145), Expect = 6e-08 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 17/140 (12%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTG---NLQNRASYLQRDNRRYTDM 305 GFE++ + A + +Y K+ ++M YG +E E+++G ++ R L+ N R+ ++ Sbjct: 995 GFESYTDDAQTQLNIYNTKIRSIMSLYGISSEGEVVSGCILKVKQRLGLLK--NERF-EV 1051 Query: 304 KDRILISVKDLQR----------EAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHE--- 164 + + K L R + KE D ++ E ASAWY VTY Y ++ Sbjct: 1052 TEYVRARFKTLWRKTRAEFFRQFDEKEESSTDRRREEQLKKASAWYMVTYSDDYNNKPHG 1111 Query: 163 -SSSFLSFPWIVGDILLHIK 107 S LSFPW+V D+L +K Sbjct: 1112 ASPKLLSFPWVVYDVLGGLK 1131 [68][TOP] >UniRef100_C6T7X1 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T7X1_SOYBN Length = 290 Score = 60.1 bits (144), Expect = 8e-08 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 28/151 (18%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G F+ A K Y +++ L+ Y + E+E++TG + + Y ++R+ ++K+R Sbjct: 115 GSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKY---NSRKQGELKER 171 Query: 295 ILISVKDLQREAKEWFE------ADCQQHE----YQAMASAWYHVTYHPKYYHE------ 164 + S L++E + FE + + E Y+ ASAWY VTYHP++ + Sbjct: 172 LKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKKSLDLQD 231 Query: 163 ------------SSSFLSFPWIVGDILLHIK 107 S+ LSFPWI D L K Sbjct: 232 KSSENQEADSLGSTVMLSFPWIAVDYLARTK 262 [69][TOP] >UniRef100_Q71BB5 RNA-directed RNA polymerase-like protein n=1 Tax=Branchiostoma floridae RepID=Q71BB5_BRAFL Length = 1005 Score = 59.7 bits (143), Expect = 1e-07 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 14/139 (10%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTG---NLQNRASYLQRDNRRYTDM 305 GF++++E A + +Y M ++M YG +E E+++G ++ R L+ N R+ ++ Sbjct: 857 GFDSYIEDAQTQLNIYNNMMMSIMSLYGITSEGEVVSGCILKVKQRLGLLK--NERF-EV 913 Query: 304 KDRILISVKDLQREAK---------EWFEADCQQHEYQAMASAWYHVTYHP--KYYHESS 158 + + K L R+ + E + ++ E ASAWY VTY K S Sbjct: 914 AEYVRARFKTLWRKTRAEFFKQFDVEELSEERRKEEQLKKASAWYMVTYSDANKPLDPSP 973 Query: 157 SFLSFPWIVGDILLHIKSV 101 LSFPW+V D+L +K + Sbjct: 974 KLLSFPWVVYDVLASLKKI 992 [70][TOP] >UniRef100_UPI0001868CE3 hypothetical protein BRAFLDRAFT_101874 n=1 Tax=Branchiostoma floridae RepID=UPI0001868CE3 Length = 1415 Score = 58.2 bits (139), Expect = 3e-07 Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 8/129 (6%) Frame = -3 Query: 466 AFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILI 287 ++++ A ++ Y +++ +LM YG ETE E ++G + +++ + RY +++ + Sbjct: 987 SYVKKARRSRDRYNDQLRSLMAQYGIETEAEAVSGCIVKLHKHMEDRHERY-EIERVAKV 1045 Query: 286 SVKDLQREAKEWF--------EADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIV 131 ++DL++ ++ F + ASAWY VTY + LSFPW++ Sbjct: 1046 RIEDLRKRTRQDFFEEFGGEESVELDHPHVLGKASAWYTVTYS----DPDAKLLSFPWVI 1101 Query: 130 GDILLHIKS 104 GD+L +K+ Sbjct: 1102 GDVLGILKT 1110 [71][TOP] >UniRef100_B3TNC1 RNA-dependent RNA polymerase n=1 Tax=Nicotiana attenuata RepID=B3TNC1_9SOLA Length = 1197 Score = 57.8 bits (138), Expect = 4e-07 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G AF++ A + K Y ++ L+ Y E+E++TG++ + Y ++ ++K+R Sbjct: 1031 GSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKY---SAKKQGELKER 1087 Query: 295 ILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYYH------- 167 + + L++E + FE D + Y+ ASAWY VTY+P + Sbjct: 1088 LKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQL 1147 Query: 166 ----ESSSFLSFPWIVGDILLHIK 107 S+ LSF WI D L IK Sbjct: 1148 PDAVSSTVMLSFAWIAADYLARIK 1171 [72][TOP] >UniRef100_C3Z728 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3Z728_BRAFL Length = 1207 Score = 57.0 bits (136), Expect = 6e-07 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 10/134 (7%) Frame = -3 Query: 466 AFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILI 287 ++++ A ++ Y +++ +LM YG ETE E ++G + ++ RY +++ + Sbjct: 851 SYVKKARRSRDRYNDQLRSLMAQYGIETESEAVSGCIVKLHKHMDDRYERY-EIERVAKV 909 Query: 286 SVKDLQREAKEWF--------EADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIV 131 ++DL++ ++ F + ASAWY VTY + LSFPW++ Sbjct: 910 RIEDLRKRTRQDFFEEFGGEESVELDHPHVLKKASAWYTVTYS----DPDAKLLSFPWVI 965 Query: 130 GDIL--LHIKSVNS 95 GDIL L++K+ + Sbjct: 966 GDILGILNLKTATT 979 [73][TOP] >UniRef100_B5BLP6 RNA-dependent RNA polymerase 6 n=1 Tax=Nicotiana tabacum RepID=B5BLP6_TOBAC Length = 1197 Score = 56.2 bits (134), Expect = 1e-06 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 21/144 (14%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G F++ A + K Y ++ L+ Y E+E++TG++ + Y ++ ++K+R Sbjct: 1031 GSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKY---SAKKQGELKER 1087 Query: 295 ILISVKDLQREAKEWFEA----------DCQQHEYQAMASAWYHVTYHPKYYH------- 167 + + L++E + FE D + Y+ ASAWY VTY+P + Sbjct: 1088 LKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQL 1147 Query: 166 ----ESSSFLSFPWIVGDILLHIK 107 S+ LSF WI D L IK Sbjct: 1148 PDAISSTVMLSFAWIAADYLARIK 1171 [74][TOP] >UniRef100_UPI0001868BE6 hypothetical protein BRAFLDRAFT_101867 n=1 Tax=Branchiostoma floridae RepID=UPI0001868BE6 Length = 1395 Score = 53.9 bits (128), Expect = 5e-06 Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 11/106 (10%) Frame = -3 Query: 391 AETEDELLTGNLQNRASYLQRDNRRYTDMKDRILIS-VKDLQREAKEWF------EADCQ 233 AETE E ++G + ++ DNR +R+ +KDL+R +E F E + + Sbjct: 982 AETEAEAMSGCIGRIHKHM--DNRYDRHEVERVFKERIKDLRRRTREEFFVEFGGEKNVK 1039 Query: 232 QHEY----QAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILLHIK 107 + +Y QA ASAWY VTY + LSFPWIVGDIL IK Sbjct: 1040 KSDYPPEVQAKASAWYVVTYSGA---NENRLLSFPWIVGDILAVIK 1082 [75][TOP] >UniRef100_C5YIV2 Putative uncharacterized protein Sb07g006150 n=1 Tax=Sorghum bicolor RepID=C5YIV2_SORBI Length = 1220 Score = 53.9 bits (128), Expect = 5e-06 Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 20/143 (13%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDR 296 G F A K Y ++ AL+ Y TE EL+TG + + A +R + ++ Sbjct: 1070 GASHFFLDAWQWKCAYESRLNALLNQYSGCTEAELVTGVIWSLADGRKRKKH---EANEK 1126 Query: 295 ILISVKDLQREAKEWFEADCQQHE----------YQAMASAWYHVTYHPKYY-------- 170 + +L +E + FE + Y+ ASAWY VTYHP++ Sbjct: 1127 FSHAYPELHQEFRRVFENIAADQDRMSDEKKNLVYEMKASAWYQVTYHPEWIRFSREKEP 1186 Query: 169 --HESSSFLSFPWIVGDILLHIK 107 E + LSFPWI D L IK Sbjct: 1187 HGEERPARLSFPWIAIDYLACIK 1209 [76][TOP] >UniRef100_B7PCS8 RNA-dependent RNA polymerase, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PCS8_IXOSC Length = 632 Score = 53.1 bits (126), Expect = 9e-06 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 18/148 (12%) Frame = -3 Query: 475 GFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTD---M 305 G+ E+A + +Y +M +++ +G +TE E+++G + + + Y N+ TD + Sbjct: 229 GWRDHEESAQTALAVYGSRMEQILRQHGIKTEGEVVSGIINSVSDY----NKSKTDKASV 284 Query: 304 KDRILISVKDLQREAKEWF----EADCQQHEYQA----------MASAWYHVTYHPKYYH 167 + + +DL + +E F +A CQ + +ASAWY VTY + Sbjct: 285 EALVEKQYRDLVKSTREQFFRDVDAACQSLKVPTEAGKLTVLLQVASAWYMVTYAGVW-- 342 Query: 166 ESSSFLSFPWIVGDILLHI-KSVNSKVL 86 + S+ SFPW V D+LL + K VN+ L Sbjct: 343 QESNCYSFPWSVSDVLLLVMKQVNASEL 370