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[1][TOP]
>UniRef100_C6TAR7 Pseudouridylate synthase n=1 Tax=Glycine max RepID=C6TAR7_SOYBN
Length = 370
Score = 249 bits (636), Expect = 9e-65
Identities = 129/163 (79%), Positives = 141/163 (86%), Gaps = 5/163 (3%)
Frame = +3
Query: 75 ECS---ADRPAKISKIEHPIPIDGDEEEGMSQKQR--IQRYLLAIEYIGTRFSGSQKQLT 239
ECS +RP+KIS IE+PI D DEEE M + R IQRYL+AIEYIGTRFSGSQKQL
Sbjct: 12 ECSDNNINRPSKISIIEYPIDSDIDEEEEMIKNPRNGIQRYLVAIEYIGTRFSGSQKQLN 71
Query: 240 CRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEP 419
RTVVGVLEEAF KF+ QPVSV+CSSRT AGVHALSNVCHVDIQRISKRRPGE+LTPHEP
Sbjct: 72 VRTVVGVLEEAFSKFVGQPVSVSCSSRTVAGVHALSNVCHVDIQRISKRRPGEVLTPHEP 131
Query: 420 SVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYFY 548
+VV +AVNHFLQK D+DLMVIDVRCVPSDFHAR+KAQER YFY
Sbjct: 132 AVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQERIYFY 174
[2][TOP]
>UniRef100_Q1SKV8 Pseudouridylate synthase n=1 Tax=Medicago truncatula
RepID=Q1SKV8_MEDTR
Length = 361
Score = 236 bits (601), Expect = 1e-60
Identities = 119/161 (73%), Positives = 134/161 (83%), Gaps = 2/161 (1%)
Frame = +3
Query: 72 EECSAD--RPAKISKIEHPIPIDGDEEEGMSQKQRIQRYLLAIEYIGTRFSGSQKQLTCR 245
EECS + RP+KISKIE +E ++IQRYL+A+EYIGTRF G QKQLT R
Sbjct: 13 EECSDNNNRPSKISKIE-------EEMNQHHHHRKIQRYLVAVEYIGTRFFGFQKQLTDR 65
Query: 246 TVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSV 425
TV GVLE+AFCKF+ QPVSV CSSRTDAGVHALSNVCHVDI+RISKR+PGE+L PHEP+V
Sbjct: 66 TVAGVLEDAFCKFVGQPVSVVCSSRTDAGVHALSNVCHVDIERISKRKPGEVLQPHEPAV 125
Query: 426 VRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYFY 548
VR+AVNHFLQK + DL VIDVRCVPSDFHARYKAQERTYFY
Sbjct: 126 VRRAVNHFLQKENGDLAVIDVRCVPSDFHARYKAQERTYFY 166
[3][TOP]
>UniRef100_A7QCG7 Pseudouridylate synthase n=1 Tax=Vitis vinifera RepID=A7QCG7_VITVI
Length = 380
Score = 231 bits (588), Expect = 3e-59
Identities = 110/161 (68%), Positives = 136/161 (84%), Gaps = 5/161 (3%)
Frame = +3
Query: 81 SADRPAKISKIEHPIPIDGDEEEG-----MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCR 245
S RP+KI++ + DG++++ M+Q R+QRYL+A+EYIGTRFSGSQ+QL CR
Sbjct: 28 SPQRPSKIARTDDLS--DGEQQDSVASKTMTQNPRVQRYLVAVEYIGTRFSGSQQQLNCR 85
Query: 246 TVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSV 425
TV G L+EAF KF+ QPVS+ CSSRTDAGVHALSNVCHVD++RISKR+PGE+L PHEP+V
Sbjct: 86 TVAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPAV 145
Query: 426 VRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYFY 548
VR+AVNHFLQK++ D+MVIDVRCVP DFHARYKA+ERTYFY
Sbjct: 146 VRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARERTYFY 186
[4][TOP]
>UniRef100_B9SKD4 Pseudouridylate synthase n=1 Tax=Ricinus communis
RepID=B9SKD4_RICCO
Length = 372
Score = 229 bits (583), Expect = 1e-58
Identities = 114/166 (68%), Positives = 137/166 (82%), Gaps = 10/166 (6%)
Frame = +3
Query: 81 SADRPAKISKIEHPIPI--DGDEE--------EGMSQKQRIQRYLLAIEYIGTRFSGSQK 230
S +RP+KI K + + +G+EE E MS ++QRYL+A+EYIGT+F+GSQK
Sbjct: 13 SRNRPSKILKTQDFVDDNEEGEEELQESSFVAESMSSNPKLQRYLIAVEYIGTKFAGSQK 72
Query: 231 QLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTP 410
QL RTVVGVLEEAFCKF+ Q VSV+ SSRTDAGVHALSNVCHVDI+RISKR+PGE+L P
Sbjct: 73 QLNGRTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALSNVCHVDIERISKRKPGEVLPP 132
Query: 411 HEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYFY 548
HEP+VVR+AVNHFLQK++ D+MV DVRCVPSDFHAR+KAQERTYFY
Sbjct: 133 HEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQERTYFY 178
[5][TOP]
>UniRef100_UPI000034F4DB tRNA pseudouridine synthase family protein n=1 Tax=Arabidopsis
thaliana RepID=UPI000034F4DB
Length = 372
Score = 223 bits (567), Expect = 9e-57
Identities = 108/165 (65%), Positives = 136/165 (82%), Gaps = 7/165 (4%)
Frame = +3
Query: 75 ECSADRPAKISKIEHPIPIDGDEEEGMSQKQ-------RIQRYLLAIEYIGTRFSGSQKQ 233
E S +R +K+++IE + +E++G++ + R+QRYL+AIEYIGTRFSGSQ+Q
Sbjct: 15 EESLERLSKVARIEGFSDEESEEQQGLADLESMNPVNPRVQRYLVAIEYIGTRFSGSQQQ 74
Query: 234 LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPH 413
RTVVGVL+EAF KF+ QPV + CSSRTDAGVHALSNVCHVD++RISKR+PGE+L PH
Sbjct: 75 AKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPH 134
Query: 414 EPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYFY 548
EP VV++AVNHFLQ+ D D+MVIDVRCVPS++HARYKAQERTYFY
Sbjct: 135 EPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFY 179
[6][TOP]
>UniRef100_Q6NKP7 Pseudouridylate synthase n=2 Tax=Arabidopsis thaliana
RepID=Q6NKP7_ARATH
Length = 372
Score = 223 bits (567), Expect = 9e-57
Identities = 108/165 (65%), Positives = 136/165 (82%), Gaps = 7/165 (4%)
Frame = +3
Query: 75 ECSADRPAKISKIEHPIPIDGDEEEGMSQKQ-------RIQRYLLAIEYIGTRFSGSQKQ 233
E S +R +K+++IE + +E++G++ + R+QRYL+AIEYIGTRFSGSQ+Q
Sbjct: 15 EESLERLSKVARIEGFSDEESEEQQGLADLESMNPVNPRVQRYLVAIEYIGTRFSGSQQQ 74
Query: 234 LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPH 413
RTVVGVL+EAF KF+ QPV + CSSRTDAGVHALSNVCHVD++RISKR+PGE+L PH
Sbjct: 75 AKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPH 134
Query: 414 EPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYFY 548
EP VV++AVNHFLQ+ D D+MVIDVRCVPS++HARYKAQERTYFY
Sbjct: 135 EPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFY 179
[7][TOP]
>UniRef100_C5YTE9 Pseudouridylate synthase n=1 Tax=Sorghum bicolor RepID=C5YTE9_SORBI
Length = 387
Score = 208 bits (530), Expect = 2e-52
Identities = 101/140 (72%), Positives = 119/140 (85%), Gaps = 2/140 (1%)
Frame = +3
Query: 135 GDEEEGMS--QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVT 308
G+E E M+ + R QRYL+A+EYIGTRFSGSQ+Q RTVVGVLEEAF +F+ QPVS+
Sbjct: 51 GEESEVMAGARNPRAQRYLVAVEYIGTRFSGSQQQPNQRTVVGVLEEAFHRFIGQPVSIF 110
Query: 309 CSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDV 488
CSSRTDAGVHALSNVCHVD++RISKR+PGE+LTPHEP VV++AVNHFL K++ D+MV DV
Sbjct: 111 CSSRTDAGVHALSNVCHVDVERISKRKPGEVLTPHEPGVVKRAVNHFLLKNEGDIMVTDV 170
Query: 489 RCVPSDFHARYKAQERTYFY 548
RCV DFHARYKA ERTY Y
Sbjct: 171 RCVAPDFHARYKALERTYHY 190
[8][TOP]
>UniRef100_Q2QWH9 Pseudouridylate synthase n=1 Tax=Oryza sativa Japonica Group
RepID=Q2QWH9_ORYSJ
Length = 391
Score = 207 bits (526), Expect = 5e-52
Identities = 96/131 (73%), Positives = 114/131 (87%)
Frame = +3
Query: 156 SQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGV 335
++ + QRYL+A+EY+GTRFSGSQ+QL RTVVGVLEEAF KF+ QPVS+ CSSRTD GV
Sbjct: 65 ARNPQAQRYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDTGV 124
Query: 336 HALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHA 515
HALSNVCHVD++RISKR+PGE+L PHEP VV++AVNHFLQK++ D+MV DVRCV DFHA
Sbjct: 125 HALSNVCHVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMVTDVRCVAPDFHA 184
Query: 516 RYKAQERTYFY 548
RYKA ERTY Y
Sbjct: 185 RYKALERTYHY 195
[9][TOP]
>UniRef100_B8BNJ9 Pseudouridylate synthase n=1 Tax=Oryza sativa Indica Group
RepID=B8BNJ9_ORYSI
Length = 391
Score = 207 bits (526), Expect = 5e-52
Identities = 96/131 (73%), Positives = 114/131 (87%)
Frame = +3
Query: 156 SQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGV 335
++ + QRYL+A+EY+GTRFSGSQ+QL RTVVGVLEEAF KF+ QPVS+ CSSRTD GV
Sbjct: 65 ARNPQAQRYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDTGV 124
Query: 336 HALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHA 515
HALSNVCHVD++RISKR+PGE+L PHEP VV++AVNHFLQK++ D+MV DVRCV DFHA
Sbjct: 125 HALSNVCHVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMVTDVRCVAPDFHA 184
Query: 516 RYKAQERTYFY 548
RYKA ERTY Y
Sbjct: 185 RYKALERTYHY 195
[10][TOP]
>UniRef100_B9N771 Pseudouridylate synthase n=1 Tax=Populus trichocarpa
RepID=B9N771_POPTR
Length = 326
Score = 202 bits (513), Expect = 2e-50
Identities = 96/129 (74%), Positives = 113/129 (87%)
Frame = +3
Query: 162 KQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHA 341
K +QRYL+A+EYIGTRF GSQ+QL RTVVGVL+EAF KF+ QPV++ SSRTDAGVHA
Sbjct: 2 KPGLQRYLVAVEYIGTRFCGSQQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHA 61
Query: 342 LSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARY 521
LSNVCHVD++RISKR+PGE+L PHEP+VVRKAVNHFLQK + D+MV DVR V + FHAR+
Sbjct: 62 LSNVCHVDVERISKRKPGEVLPPHEPAVVRKAVNHFLQKKEGDIMVTDVRSVSAHFHARF 121
Query: 522 KAQERTYFY 548
KAQERTYFY
Sbjct: 122 KAQERTYFY 130
[11][TOP]
>UniRef100_B6SIS1 Pseudouridylate synthase n=1 Tax=Zea mays RepID=B6SIS1_MAIZE
Length = 386
Score = 199 bits (507), Expect = 8e-50
Identities = 98/140 (70%), Positives = 115/140 (82%), Gaps = 2/140 (1%)
Frame = +3
Query: 135 GDEEEGMS--QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVT 308
G+E E M+ + R QRYL+A+EYIGTRFSGSQKQ RTV GVLEEAF +F+ QPVS+
Sbjct: 50 GEESEMMAGARNPRAQRYLVAVEYIGTRFSGSQKQPNQRTVTGVLEEAFHRFIGQPVSII 109
Query: 309 CSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDV 488
SSRTDAGVHALSNVCHVD++RISKR+PGE+LTPHEP VV++AVNHFL K + D+MV DV
Sbjct: 110 FSSRTDAGVHALSNVCHVDVERISKRKPGEVLTPHEPGVVKRAVNHFLLKSEGDIMVTDV 169
Query: 489 RCVPSDFHARYKAQERTYFY 548
CV DFHARYK+ ERTY Y
Sbjct: 170 CCVAPDFHARYKSLERTYHY 189
[12][TOP]
>UniRef100_O04502 Pseudouridylate synthase n=1 Tax=Arabidopsis thaliana
RepID=O04502_ARATH
Length = 250
Score = 177 bits (448), Expect = 6e-43
Identities = 92/162 (56%), Positives = 118/162 (72%), Gaps = 7/162 (4%)
Frame = +3
Query: 75 ECSADRPAKISKIEHPIPIDGDEEEGMSQKQ-------RIQRYLLAIEYIGTRFSGSQKQ 233
E S +R +K+++IE + +E++G++ + R+QRYL+AIEYIGTRFSGSQ+Q
Sbjct: 15 EESLERLSKVARIEGFSDEESEEQQGLADLESMNPVNPRVQRYLVAIEYIGTRFSGSQQQ 74
Query: 234 LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPH 413
RTVVGVL+ DAGVHALSNVCHVD++RISKR+PGE+L PH
Sbjct: 75 AKDRTVVGVLQ-------------------DAGVHALSNVCHVDVERISKRKPGEVLPPH 115
Query: 414 EPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERT 539
EP VV++AVNHFLQ+ D D+MVIDVRCVPS++HARYKAQERT
Sbjct: 116 EPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERT 157
[13][TOP]
>UniRef100_A9SK13 Pseudouridylate synthase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9SK13_PHYPA
Length = 331
Score = 168 bits (425), Expect = 3e-40
Identities = 82/133 (61%), Positives = 99/133 (74%), Gaps = 2/133 (1%)
Frame = +3
Query: 156 SQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGV 335
S K +QRYL+ +EYIGTRF G Q+Q RTV G LE AF KF+ QPV SSRTD GV
Sbjct: 4 SAKAGVQRYLITVEYIGTRFLGFQRQKGKRTVQGCLESAFEKFIGQPVISAVSSRTDTGV 63
Query: 336 HALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFL--QKHDNDLMVIDVRCVPSDF 509
HAL+N CHVD++R SKR+PGE++ PHEP VV+ A+NHFL QK D+ V+ V+CV DF
Sbjct: 64 HALANTCHVDVERKSKRKPGEVMPPHEPRVVQTAINHFLHAQKDAGDMAVVGVQCVSPDF 123
Query: 510 HARYKAQERTYFY 548
HARY+AQERTY Y
Sbjct: 124 HARYRAQERTYHY 136
[14][TOP]
>UniRef100_C1FJS9 Pseudouridylate synthase n=1 Tax=Micromonas sp. RCC299
RepID=C1FJS9_9CHLO
Length = 452
Score = 106 bits (265), Expect = 1e-21
Identities = 67/177 (37%), Positives = 90/177 (50%), Gaps = 22/177 (12%)
Frame = +3
Query: 84 ADRPAKISKIEHPIPIDGDEEEGMSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVL 263
A+ PA + + P+ G ++ RYLL ++Y GT F G Q+Q RTV G +
Sbjct: 35 AEGPAGVERSRDSAPVAPSSIMGATRAA--PRYLLRVQYDGTNFHGFQRQANARTVQGCV 92
Query: 264 EEAFCKF------------------LSQPVSVTCSSRTDAGVHALSNVCHVDIQ-RISKR 386
E+A F + + SSRTDAGVHAL N HVD+ R+S+R
Sbjct: 93 EDALDAFAGGGGGGGGGGGGDGADTMRSSIVTHGSSRTDAGVHALDNTMHVDLPPRVSRR 152
Query: 387 RPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCV---PSDFHARYKAQERTYFY 548
P L PHEP VV A+NHFL+K + + RC+ P+ FHAR+ A RTY Y
Sbjct: 153 EPTRALPPHEPHVVASALNHFLKKRGAPDVAV-TRCIRVDPNAFHARFSATGRTYHY 208
[15][TOP]
>UniRef100_UPI0001B7B6E3 UPI0001B7B6E3 related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7B6E3
Length = 291
Score = 91.7 bits (226), Expect = 3e-17
Identities = 62/128 (48%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGV---LEEAFCKFLS-QPVSVTCSSRTDAGVHAL 344
RYL+ +Y+GT F+G VGV LEEA + S +PV T SSRTDAGVHAL
Sbjct: 13 RYLVFFQYLGTDFNGVAAVRGNHRAVGVQNFLEEAAKRLNSVEPVRFTISSRTDAGVHAL 72
Query: 345 SNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
SN H+DIQ RRPG P P +V KA+N L KH + V+ VP+DFHAR+
Sbjct: 73 SNAAHLDIQ----RRPGR--PPFSPEIVTKALNTHL-KHP-AIRVLKAFRVPNDFHARHA 124
Query: 525 AQERTYFY 548
A RTY Y
Sbjct: 125 ATSRTYLY 132
[16][TOP]
>UniRef100_A2ADA5 tRNA pseudouridine synthase-like 1 n=1 Tax=Mus musculus
RepID=PUSL1_MOUSE
Length = 291
Score = 91.7 bits (226), Expect = 3e-17
Identities = 63/128 (49%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVL---EEAFCKFLS-QPVSVTCSSRTDAGVHAL 344
RYL+ ++Y+GT F+G VGVL EEA + S PV T SSRTDAGVHAL
Sbjct: 13 RYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAGVHAL 72
Query: 345 SNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
SN H+DIQ RRPG+ +P P VV KA+N L KH + V+ VP+DFHAR+
Sbjct: 73 SNAAHLDIQ----RRPGQ--SPFSPEVVAKALNTHL-KHP-AIRVLKAFRVPNDFHARHA 124
Query: 525 AQERTYFY 548
A RTY Y
Sbjct: 125 ATSRTYQY 132
[17][TOP]
>UniRef100_UPI0000E1F17A PREDICTED: pseudouridylate synthase-like 1 n=1 Tax=Pan troglodytes
RepID=UPI0000E1F17A
Length = 293
Score = 90.1 bits (222), Expect = 9e-17
Identities = 59/128 (46%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGV---LEEAFCKFLS-QPVSVTCSSRTDAGVHAL 344
RYL+ +Y+GT F+G + VGV LEEA + S +PV T SSRTDAGVHAL
Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72
Query: 345 SNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
SN H+D+QR S R P P V+ +A+N L+ + V+ VPSDFHARY
Sbjct: 73 SNAAHLDVQRRSGR------PPFPPEVLAEALNTHLR--HPAIRVLRAFRVPSDFHARYA 124
Query: 525 AQERTYFY 548
A RTY Y
Sbjct: 125 ATSRTYLY 132
[18][TOP]
>UniRef100_C1N0D6 Pseudouridylate synthase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N0D6_9CHLO
Length = 390
Score = 89.7 bits (221), Expect = 1e-16
Identities = 58/128 (45%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQP---VSVTCSSRTDAGVHALS 347
RYLL I+Y G F G Q+Q RTV G +EEA KF ++T SSRTDAGVHAL
Sbjct: 7 RYLLRIQYDGGAFHGFQRQANARTVQGCVEEAMAKFTGVEGGVHAITGSSRTDAGVHALD 66
Query: 348 NVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVID-VRCVPSDFHARYK 524
HVDI PH V KAVNH+L+K + R P FHARY
Sbjct: 67 ATAHVDIDD-GDAGDAPPPPPHSARTVMKAVNHYLRKTAPMASIASCARVCPETFHARYC 125
Query: 525 AQERTYFY 548
A RTY Y
Sbjct: 126 ATARTYRY 133
[19][TOP]
>UniRef100_UPI0001758939 PREDICTED: similar to CG34140 CG34140-PA n=1 Tax=Tribolium
castaneum RepID=UPI0001758939
Length = 258
Score = 89.0 bits (219), Expect = 2e-16
Identities = 55/136 (40%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCR--------TVVGVLEEAFCKF--LSQPVSVTCSSR 320
+ RYLL YIGT F G+Q+Q+T R TV G LE A + + PV V SSR
Sbjct: 3 LNRYLLHFSYIGTPFMGAQRQVTGRMPRPDDPSTVQGQLEMALKRLNPTNDPV-VYLSSR 61
Query: 321 TDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVP 500
TD+GVHAL++ CHVD+ R ++ +EP + +N + K++ + VI VP
Sbjct: 62 TDSGVHALNSTCHVDLYRSNELE-------YEPKTITICLNRYFDKNEVPIRVIKTYWVP 114
Query: 501 SDFHARYKAQERTYFY 548
DFH R+ A RTY Y
Sbjct: 115 PDFHCRHTAISRTYLY 130
[20][TOP]
>UniRef100_Q8N0Z8 tRNA pseudouridine synthase-like 1 n=1 Tax=Homo sapiens
RepID=PUSL1_HUMAN
Length = 303
Score = 88.2 bits (217), Expect = 4e-16
Identities = 58/128 (45%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGV---LEEAFCKFLS-QPVSVTCSSRTDAGVHAL 344
RYL+ +Y+GT F+G + VGV LEEA + S +PV T SSRTDAGVHAL
Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVHAL 72
Query: 345 SNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
SN H+D+QR S R P P V+ +A+N L+ + V+ VPSDFHAR+
Sbjct: 73 SNAAHLDVQRRSGR------PPFPPEVLAEALNTHLR--HPAIRVLRAFRVPSDFHARHA 124
Query: 525 AQERTYFY 548
A RTY Y
Sbjct: 125 ATSRTYLY 132
[21][TOP]
>UniRef100_C6AB91 Pseudouridylate synthase n=1 Tax=Bartonella grahamii as4aup
RepID=C6AB91_BARGA
Length = 247
Score = 87.4 bits (215), Expect = 6e-16
Identities = 46/124 (37%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L +EY G+ ++G Q+Q TV G LE+A F Q +++T + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAKLHTVQGALEQAIFSFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD + P VR A+N L+K + +++V+ VP DF AR+ A +R
Sbjct: 63 HVD-----------FIKNWHPHTVRDALNALLRKQGEAISILNVQNVPDDFDARFSAVKR 111
Query: 537 TYFY 548
Y +
Sbjct: 112 HYIF 115
[22][TOP]
>UniRef100_C0ZW56 Pseudouridylate synthase n=1 Tax=Rhodococcus erythropolis PR4
RepID=C0ZW56_RHOE4
Length = 294
Score = 87.4 bits (215), Expect = 6e-16
Identities = 55/124 (44%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L I Y GT FSG +Q RTV G +E+ L QPV +T + RTDAGVHA V
Sbjct: 22 RLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRQPVQLTVAGRTDAGVHATGQVA 81
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD+ PGELL P +PS + + + FL K D+ V + VP DF AR+ A R
Sbjct: 82 HVDV-------PGELL-PDDPSRLVRRLARFLPK---DVRVKQISVVPGDFDARFSAIRR 130
Query: 537 TYFY 548
Y Y
Sbjct: 131 YYEY 134
[23][TOP]
>UniRef100_C3JGZ4 Pseudouridylate synthase n=1 Tax=Rhodococcus erythropolis SK121
RepID=C3JGZ4_RHOER
Length = 294
Score = 87.0 bits (214), Expect = 8e-16
Identities = 54/124 (43%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L I Y GT FSG +Q RTV G +E+ L +PV +T + RTDAGVHA V
Sbjct: 22 RLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRRPVQLTVAGRTDAGVHATGQVA 81
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD+ PGELL P +PS + + + FL K D+ V + VP DF AR+ A R
Sbjct: 82 HVDV-------PGELL-PDDPSRLVRRLARFLPK---DVRVKQISVVPGDFDARFSAMRR 130
Query: 537 TYFY 548
Y Y
Sbjct: 131 YYEY 134
[24][TOP]
>UniRef100_UPI00005BE6CC PREDICTED: pseudouridylate synthase-like 1 n=1 Tax=Bos taurus
RepID=UPI00005BE6CC
Length = 303
Score = 86.7 bits (213), Expect = 1e-15
Identities = 60/128 (46%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGV---LEEAFCKFLS-QPVSVTCSSRTDAGVHAL 344
RYL+ +Y+GT F+G + VGV LEEA + S PV T SSRTDAGVHAL
Sbjct: 9 RYLVYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVMPVKFTISSRTDAGVHAL 68
Query: 345 SNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
SN H+DIQR S L P P V+ +A+N L KH + V+ VPS FHAR+
Sbjct: 69 SNAAHLDIQRRSD------LPPFSPEVLTEALNTHL-KHP-AIRVLQAFRVPSHFHARHA 120
Query: 525 AQERTYFY 548
A RTY Y
Sbjct: 121 AISRTYLY 128
[25][TOP]
>UniRef100_A6QP68 Pseudouridylate synthase (Fragment) n=1 Tax=Bos taurus
RepID=A6QP68_BOVIN
Length = 312
Score = 86.7 bits (213), Expect = 1e-15
Identities = 60/128 (46%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGV---LEEAFCKFLS-QPVSVTCSSRTDAGVHAL 344
RYL+ +Y+GT F+G + VGV LEEA + S PV T SSRTDAGVHAL
Sbjct: 34 RYLVYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVMPVKFTISSRTDAGVHAL 93
Query: 345 SNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
SN H+DIQR S L P P V+ +A+N L KH + V+ VPS FHAR+
Sbjct: 94 SNAAHLDIQRRSD------LPPFSPEVLTEALNTHL-KHP-AIRVLQAFRVPSHFHARHA 145
Query: 525 AQERTYFY 548
A RTY Y
Sbjct: 146 AISRTYLY 153
[26][TOP]
>UniRef100_Q9ZCA3 tRNA pseudouridine synthase A n=1 Tax=Rickettsia prowazekii
RepID=TRUA_RICPR
Length = 245
Score = 86.7 bits (213), Expect = 1e-15
Identities = 49/124 (39%), Positives = 72/124 (58%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT F+G Q+Q +V +LEEA KF S+ V++ S RTDAGVHA+ V
Sbjct: 3 RYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + EP + KA+N+F++ + D+ V + V ++FHAR+ A R
Sbjct: 63 HFDLSKYL-----------EPYKIIKAINYFVRPY--DVGVWNCELVSNNFHARFSAISR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYIY 113
[27][TOP]
>UniRef100_A9ILJ7 tRNA pseudouridine synthase A n=1 Tax=Bartonella tribocorum CIP
105476 RepID=TRUA_BART1
Length = 247
Score = 85.9 bits (211), Expect = 2e-15
Identities = 44/126 (34%), Positives = 69/126 (54%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+ R+ L +EY G+ ++G Q+Q T+ G LE+A +F Q +++T + RTDAGVHA
Sbjct: 1 MSRFKLTLEYDGSNYAGWQRQAKLHTIQGALEQAIFRFSGQQLTITTAGRTDAGVHATGQ 60
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V HVD + P VR A+N L++ + +++V VP DF AR+ A
Sbjct: 61 VAHVD-----------FIKNWPPHTVRDALNALLRQQSEAISILNVENVPDDFDARFSAI 109
Query: 531 ERTYFY 548
+R Y +
Sbjct: 110 KRHYLF 115
[28][TOP]
>UniRef100_Q6G547 tRNA pseudouridine synthase A n=1 Tax=Bartonella henselae
RepID=TRUA_BARHE
Length = 247
Score = 84.0 bits (206), Expect = 7e-15
Identities = 44/124 (35%), Positives = 69/124 (55%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L +EY G+ ++G Q+Q RT+ LE+A F Q +++T + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELRTIQSALEQALFHFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD ++ + VR A+N LQK +++ ++ V+ VP F AR+ A +R
Sbjct: 63 HVDFEKNWRTH-----------TVRDALNAHLQKQGDNIAILHVQNVPDSFDARFSAIKR 111
Query: 537 TYFY 548
Y +
Sbjct: 112 HYLF 115
[29][TOP]
>UniRef100_Q68VQ6 tRNA pseudouridine synthase A n=1 Tax=Rickettsia typhi
RepID=TRUA_RICTY
Length = 245
Score = 83.6 bits (205), Expect = 9e-15
Identities = 47/124 (37%), Positives = 70/124 (56%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT FSG Q+Q +V +LEEA KF + V++ S RTDAGVHA+ +
Sbjct: 3 RYKITIEYLGTHFSGWQRQAGVLSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQIA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + EP + KA+N+F++ + + V + V ++FHAR+ A R
Sbjct: 63 HFDLSKYL-----------EPYKIIKAINYFVRPY--AVGVWNCELVSNNFHARFSATSR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYIY 113
[30][TOP]
>UniRef100_C6XQ46 Pseudouridylate synthase n=1 Tax=Hirschia baltica ATCC 49814
RepID=C6XQ46_HIRBI
Length = 247
Score = 82.8 bits (203), Expect = 2e-14
Identities = 50/124 (40%), Positives = 70/124 (56%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L IEY G+ + G Q+Q T R+V VLEEA KF + V+V + RTDAGVHA+ V
Sbjct: 3 RFKLTIEYDGSPYVGWQRQKTHRSVQQVLEEAIPKFAGETVTVHGAGRTDAGVHAMGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ + E T VR A+NHF++ D + ++ V +FHAR+ A R
Sbjct: 63 HIDLSK-------EFTT----DKVRDAMNHFMK--DEPVSILLAEEVSDEFHARFSAYAR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYIY 113
[31][TOP]
>UniRef100_Q6G1G9 tRNA pseudouridine synthase A n=1 Tax=Bartonella quintana
RepID=TRUA_BARQU
Length = 247
Score = 82.8 bits (203), Expect = 2e-14
Identities = 44/124 (35%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L +EY G+ ++G Q+Q T+ LE+A F Q ++ T + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELHTIQSALEQAIFHFSGQQLTTTTAGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD + + VR A+N +LQK ++ V++V+ VP +F AR+ A +R
Sbjct: 63 HVD-----------FIKNWQTYTVRDALNAYLQKQGEEIAVLNVQNVPDNFDARFSAIKR 111
Query: 537 TYFY 548
Y +
Sbjct: 112 HYLF 115
[32][TOP]
>UniRef100_A4S4E5 Pseudouridylate synthase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S4E5_OSTLU
Length = 308
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/134 (41%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTC--SSRTDAGVHA 341
+ RYL +EY G RF G Q+Q TV G L+EA F ++ C SSRTD GVHA
Sbjct: 11 VPRYLAFLEYDGARFRGFQRQCGVAATVQGALDEALTAFTGARGAIECVGSSRTDVGVHA 70
Query: 342 LSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSD----- 506
L N H D R +K G + PH+ + VR+ VN+ L+K + V + CV D
Sbjct: 71 LRNSAHFDFARTTK--DGTTVEPHDGASVRRGVNYHLRKLGAAVRVTE--CVRVDEMNPK 126
Query: 507 FHARYKAQERTYFY 548
FHAR+ A R Y Y
Sbjct: 127 FHARHDAVARRYRY 140
[33][TOP]
>UniRef100_B9KZV8 Pseudouridylate synthase n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9KZV8_THERP
Length = 279
Score = 82.0 bits (201), Expect = 3e-14
Identities = 51/125 (40%), Positives = 68/125 (54%)
Frame = +3
Query: 174 QRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
QRY L Y GT FSGSQ+Q RTV GVLEEA + +PV V + RTDAGVHA+ V
Sbjct: 4 QRYRLDFGYEGTAFSGSQRQPGLRTVQGVLEEALARLAGEPVRVALAGRTDAGVHAVGQV 63
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
D L H+ + + +A+ +L + D++V V +P+ FHAR A +
Sbjct: 64 ASFD-----------LCWRHDEATLARALQAWLPE---DVVVYRVARMPAGFHARRGAVD 109
Query: 534 RTYFY 548
R Y Y
Sbjct: 110 REYRY 114
[34][TOP]
>UniRef100_B0WVR9 Pseudouridylate synthase n=1 Tax=Culex quinquefasciatus
RepID=B0WVR9_CULQU
Length = 476
Score = 82.0 bits (201), Expect = 3e-14
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVS---VTCSSRTDAGVHA 341
+ RYL+ + Y+GT F + + ++V G LE A KF +PV+ + SSRTDAGVHA
Sbjct: 1 MNRYLINLSYVGTHFRDNGRLEDPQSVEGALEIALKKF--RPVNEFKIKLSSRTDAGVHA 58
Query: 342 LSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARY 521
L+N HVD++R + + P+EP + + +N + V+ R VP FHAR
Sbjct: 59 LNNAVHVDLERYNGK-------PYEPDKLTQGLNRTFGSQKIPIRVLRTRHVPLTFHARL 111
Query: 522 KAQERTYFY 548
A+ RTY Y
Sbjct: 112 CAKSRTYLY 120
[35][TOP]
>UniRef100_Q5FGS1 tRNA pseudouridine synthase A n=1 Tax=Ehrlichia ruminantium str.
Gardel RepID=TRUA_EHRRG
Length = 246
Score = 82.0 bits (201), Expect = 3e-14
Identities = 51/125 (40%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + IEY G+ F G QKQ ++ +LE+A KF Q V+V + RTDAGVHAL V
Sbjct: 2 RYKIVIEYDGSNFIGWQKQNHNSNSIQEILEKAIFKFSKQHVTVYGAGRTDAGVHALGQV 61
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D L T E +VR A+N+ L H + V+ V +DFHAR+ A+
Sbjct: 62 AHFD-----------LTTDFETYIVRNAINYHLISH--AIAVVHVEKTDTDFHARFSAKR 108
Query: 534 RTYFY 548
R Y Y
Sbjct: 109 RYYLY 113
[36][TOP]
>UniRef100_A7HPQ3 tRNA pseudouridine synthase A n=1 Tax=Parvibaculum lavamentivorans
DS-1 RepID=TRUA_PARL1
Length = 246
Score = 81.6 bits (200), Expect = 3e-14
Identities = 49/124 (39%), Positives = 64/124 (51%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G+ F G Q Q R+V VLEE F Q + + + RTDAGVHAL V
Sbjct: 3 RYKLTIEYDGSPFVGWQAQTNGRSVQQVLEEGIKGFCGQELKIFGAGRTDAGVHALGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD + TP P +R AVN ++ H + +++ VP F AR+ A +R
Sbjct: 63 HVDFE-----------TPVAPDTLRDAVNAHMRPH--PVAIVEAEEVPDSFEARFSAVKR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYMY 113
[37][TOP]
>UniRef100_C8X4C1 tRNA pseudouridine synthase A n=1 Tax=Desulfohalobium retbaense DSM
5692 RepID=C8X4C1_9DELT
Length = 254
Score = 80.5 bits (197), Expect = 7e-14
Identities = 49/124 (39%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L + Y GT F+G Q Q RTV G LE+AF P+ V + RTD+GVHA+ VC
Sbjct: 3 RLKLVVAYTGTHFAGWQLQPRDRTVQGCLEDAFATLCQHPLRVHGAGRTDSGVHAVGQVC 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H DI P + KA+N L K D+ V + V DFHAR+ AQ +
Sbjct: 63 HCDIPPEKNHIPWQ-----------KALNAILPK---DIAVCEAAYVRDDFHARFSAQAK 108
Query: 537 TYFY 548
Y Y
Sbjct: 109 EYAY 112
[38][TOP]
>UniRef100_UPI00018450E4 hypothetical protein PROVRUST_02317 n=1 Tax=Providencia rustigianii
DSM 4541 RepID=UPI00018450E4
Length = 271
Score = 80.1 bits (196), Expect = 1e-13
Identities = 49/132 (37%), Positives = 67/132 (50%)
Frame = +3
Query: 153 MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
MS+ ++ R L IEY G+R+ G Q+Q ++V G LEEA K ++P+SV C+ RTDAG
Sbjct: 1 MSESTKLYRIALGIEYNGSRYYGWQRQQEVKSVQGCLEEALSKIAAEPISVNCAGRTDAG 60
Query: 333 VHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFH 512
VHA V H + I K E + A H D+ V + V +FH
Sbjct: 61 VHATGQVVHFETTAIRK----------EAAWTMGANTHL----PPDIAVRWCKPVDEEFH 106
Query: 513 ARYKAQERTYFY 548
AR+ A R Y Y
Sbjct: 107 ARFSATARRYRY 118
[39][TOP]
>UniRef100_UPI00003849ED COG0101: Pseudouridylate synthase n=1 Tax=Magnetospirillum
magnetotacticum MS-1 RepID=UPI00003849ED
Length = 256
Score = 80.1 bits (196), Expect = 1e-13
Identities = 47/124 (37%), Positives = 65/124 (52%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY GT F+G Q+Q +V GVLE+A K P ++ + RTDAGVHA V
Sbjct: 3 RYRLLVEYDGTPFNGWQRQDKGLSVQGVLEQAVEKLTGSPCTINAAGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD+ R + VR A+N+ ++ + V+ V DFHAR+ A R
Sbjct: 63 HVDLPR-----------DYPADTVRDALNYHMK--PKPVAVVAAELVGDDFHARFSAVGR 109
Query: 537 TYFY 548
+Y Y
Sbjct: 110 SYLY 113
[40][TOP]
>UniRef100_B8IFQ2 tRNA pseudouridine synthase A n=1 Tax=Methylobacterium nodulans ORS
2060 RepID=TRUA_METNO
Length = 254
Score = 80.1 bits (196), Expect = 1e-13
Identities = 50/124 (40%), Positives = 65/124 (52%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY GT F+G Q+Q RTV LEEA +F+++PV V C+ RTDAGVHA V
Sbjct: 3 RYKLVVEYDGTAFAGWQRQAADRTVQQALEEAIERFVNRPVRVHCAGRTDAGVHASHQVV 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ R VR A N L+ + V+ V DF AR+ A +R
Sbjct: 63 HLDLDR-----------EWRTDTVRDATNAHLR--PEPVSVLSAARVGPDFDARHSALKR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[41][TOP]
>UniRef100_Q5HBA4 tRNA pseudouridine synthase A n=1 Tax=Ehrlichia ruminantium str.
Welgevonden RepID=TRUA_EHRRW
Length = 246
Score = 80.1 bits (196), Expect = 1e-13
Identities = 51/125 (40%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + IEY G+ F G QKQ ++ +LE+A KF Q V V + RTDAGVHAL V
Sbjct: 2 RYKIVIEYDGSDFIGWQKQNHNSNSIQEILEKAIFKFSKQHVIVYGAGRTDAGVHALGQV 61
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D L T E +VR A+N+ L H + V+ V +DFHAR+ A+
Sbjct: 62 AHFD-----------LTTDFETYIVRNAINYHLISH--AIAVVHVEKTDTDFHARFSAKR 108
Query: 534 RTYFY 548
R Y Y
Sbjct: 109 RYYLY 113
[42][TOP]
>UniRef100_A3SF68 Pseudouridylate synthase n=2 Tax=Sulfitobacter RepID=A3SF68_9RHOB
Length = 262
Score = 79.7 bits (195), Expect = 1e-13
Identities = 45/126 (35%), Positives = 68/126 (53%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+QRY L IEY G F G Q+Q+ +V G +E+A K + ++ + RTDAGVHAL+
Sbjct: 1 MQRYALKIEYHGAPFVGWQRQIDLASVQGAIEDALAKIEPRAHNIAAAGRTDAGVHALAQ 60
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H D++R P + +A+N+ L+ + ++D V DFHAR+ A
Sbjct: 61 VAHCDMER-----------DWTPFRLSEAINYHLK--PLPIAIVDCVAVDDDFHARFSAL 107
Query: 531 ERTYFY 548
ER Y +
Sbjct: 108 ERRYLF 113
[43][TOP]
>UniRef100_B4J2A3 Pseudouridylate synthase n=1 Tax=Drosophila grimshawi
RepID=B4J2A3_DROGR
Length = 317
Score = 79.7 bits (195), Expect = 1e-13
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFLSQ-PVSVTCSSRT 323
+ RYLL I YIGT F G QK +L ++ G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTNFRGIQKTINKLEEARLDTNSIQGCLELALRVFRPKNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + HVD++R + P++ S + +N L KH + ++ + V
Sbjct: 61 DAGVHALHSTVHVDLERSDGK-------PYDTSTLTGVLNRTLDKHKLPIRILSSQRVVD 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 TFHCRYHATGRTYLY 128
[44][TOP]
>UniRef100_B4J2A2 Pseudouridylate synthase n=1 Tax=Drosophila grimshawi
RepID=B4J2A2_DROGR
Length = 496
Score = 79.7 bits (195), Expect = 1e-13
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFLSQ-PVSVTCSSRT 323
+ RYLL I YIGT F G QK +L ++ G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTNFRGIQKTINKLEEARLDTNSIQGCLELALRVFRPKNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + HVD++R + P++ S + +N L KH + ++ + V
Sbjct: 61 DAGVHALHSTVHVDLERSDGK-------PYDTSTLTGVLNRTLDKHKLPIRILSSQRVVD 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 TFHCRYHATGRTYLY 128
[45][TOP]
>UniRef100_A1UUB6 tRNA pseudouridine synthase A n=1 Tax=Bartonella bacilliformis
KC583 RepID=TRUA_BARBK
Length = 247
Score = 79.7 bits (195), Expect = 1e-13
Identities = 40/124 (32%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L +EY G+ ++G Q+Q RTV G +E+A F Q +++T + RTDAGVHA V
Sbjct: 3 RFKLTLEYDGSNYAGWQRQAELRTVQGAVEQAIFHFSGQQLTITTAGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD ++ + + A+N L++ +++ +++V +P F AR A +R
Sbjct: 63 HVDFEK-----------DWHVNTIHNALNAHLRQQGDNIAILNVENIPDSFDARLSAVKR 111
Query: 537 TYFY 548
Y +
Sbjct: 112 HYLF 115
[46][TOP]
>UniRef100_UPI000197C6D8 hypothetical protein PROVRETT_02654 n=1 Tax=Providencia rettgeri
DSM 1131 RepID=UPI000197C6D8
Length = 271
Score = 79.3 bits (194), Expect = 2e-13
Identities = 49/132 (37%), Positives = 67/132 (50%)
Frame = +3
Query: 153 MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
MS+ ++ R L IEY G+R+ G Q+Q ++V G LEEA K ++P+SV C+ RTDAG
Sbjct: 1 MSESTQLYRIALGIEYNGSRYFGWQRQQEVKSVQGCLEEALSKIAAEPISVFCAGRTDAG 60
Query: 333 VHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFH 512
VHA V H + I K E + A H D+ V + V +FH
Sbjct: 61 VHATGQVVHFETSAIRK----------EAAWTMGANTHL----PPDIAVRWCKPVAEEFH 106
Query: 513 ARYKAQERTYFY 548
AR+ A R Y Y
Sbjct: 107 ARFSATARRYRY 118
[47][TOP]
>UniRef100_A8F322 Pseudouridylate synthase n=1 Tax=Rickettsia massiliae MTU5
RepID=A8F322_RICM5
Length = 246
Score = 79.3 bits (194), Expect = 2e-13
Identities = 47/124 (37%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT +G QKQ +V +LEEA KF + V + S RTDAGVHA+ V
Sbjct: 4 RYKITIEYLGTDLAGWQKQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQVA 63
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + L PH+ + A+N+F + + + V + P++FHAR+ A R
Sbjct: 64 HFDLSK--------YLEPHK---IITAINYFARPY--AVGVWNCELAPNNFHARFSATSR 110
Query: 537 TYFY 548
Y Y
Sbjct: 111 YYIY 114
[48][TOP]
>UniRef100_B6XIY7 Pseudouridylate synthase n=1 Tax=Providencia alcalifaciens DSM
30120 RepID=B6XIY7_9ENTR
Length = 271
Score = 79.3 bits (194), Expect = 2e-13
Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Frame = +3
Query: 153 MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
MS+ ++ R L IEY G+R+ G Q+Q ++V G LE A K ++P+SV C+ RTDAG
Sbjct: 1 MSESPKLHRIALGIEYNGSRYYGWQRQQEVQSVQGCLEAALSKIAAEPISVNCAGRTDAG 60
Query: 333 VHALSNVCHVDIQRISKRRPGELLT-PHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDF 509
VHA V H + I K + T H P +D+ V + V +F
Sbjct: 61 VHATGQVVHFETSAIRKEAAWTMGTNTHLP---------------DDIAVRWCKPVDDEF 105
Query: 510 HARYKAQERTYFY 548
HAR+ A R Y Y
Sbjct: 106 HARFSATARRYRY 118
[49][TOP]
>UniRef100_A5BWE9 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5BWE9_VITVI
Length = 812
Score = 79.0 bits (193), Expect = 2e-13
Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Frame = +3
Query: 81 SADRPAKISKIEHPIPIDGDEEEG-----MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCR 245
S RP+KI++ + DG++++ M+Q R+QRYL+A+EYIGTRFSGSQ+QL CR
Sbjct: 640 SPQRPSKIARTDDLS--DGEQQDSVASKTMTQNPRVQRYLVAVEYIGTRFSGSQQQLNCR 697
Query: 246 TVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHE-PS 422
TVVG L F + + VS R V +VC + ++ IS P + P + PS
Sbjct: 698 TVVGALSGVFSELVLCLVSRKLRKRDTISVLVSVSVCKM-LENISSNGPNSXIIPVDLPS 756
Query: 423 VVRKAVNHFL 452
+A + F+
Sbjct: 757 AWVEAFHKFI 766
[50][TOP]
>UniRef100_B7Q911 Pseudouridylate synthase n=1 Tax=Ixodes scapularis
RepID=B7Q911_IXOSC
Length = 350
Score = 79.0 bits (193), Expect = 2e-13
Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQ-----LTCRTVVGVLEEAFCKF--LSQPVSVTCSSRTDAGV 335
RYLL Y+GTR+ G Q+Q L TV G +E A LS+PV + +SRTD GV
Sbjct: 4 RYLLKFSYLGTRYRGMQRQSSRPCLENWTVQGAIEGALRNLRPLSEPVLIL-ASRTDTGV 62
Query: 336 HALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHA 515
HA + HVD+ P ++P + +N + D+D++V +V VPS FHA
Sbjct: 63 HASLSAGHVDLV------PANTAQCYQPLQIFSVLNRHFARRDHDIVVREVLPVPSWFHA 116
Query: 516 RYKAQERTYFY 548
RY A+ R+Y Y
Sbjct: 117 RYLAKSRSYVY 127
[51][TOP]
>UniRef100_B3M6Q9 Pseudouridylate synthase n=1 Tax=Drosophila ananassae
RepID=B3M6Q9_DROAN
Length = 307
Score = 79.0 bits (193), Expect = 2e-13
Identities = 50/135 (37%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRT 323
+ RYLL I YIGT F G QK +L T+ G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTSFRGIQKTVNKSEQPRLDTNTIQGCLELALRVFRPTNDIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + HVD+QR + P++ + +N L K + ++ + V
Sbjct: 61 DAGVHALHSTVHVDLQRYDGQ-------PYDTGTLTGVLNRTLDKQRLPIRILSSQVVSD 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 SFHCRYHATGRTYLY 128
[52][TOP]
>UniRef100_A8GQ80 tRNA pseudouridine synthase A n=1 Tax=Rickettsia akari str.
Hartford RepID=TRUA_RICAH
Length = 245
Score = 79.0 bits (193), Expect = 2e-13
Identities = 47/124 (37%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT +G Q+Q +V +LEEA KF + V + S RTDAGVHA+ V
Sbjct: 3 RYKITIEYLGTNLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + L PH+ + A+N+F + + ++V V +DFHAR+ A R
Sbjct: 63 HFDLSK--------YLEPHK---IITAINYFARPY--AVVVWHCAIVLNDFHARFSATSR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYIY 113
[53][TOP]
>UniRef100_UPI00016E3733 UPI00016E3733 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E3733
Length = 295
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/129 (41%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQK----QLTCRTVVGVLEEAFCKFLS-QPVSVTCSSRTDAGVHA 341
RYL+ +YIGT +SG K QL + V LE+A K PVS++ SSRTDAGVHA
Sbjct: 2 RYLIFFQYIGTNYSGVVKVPPQQLVKKGVQDHLEDAVRKLKPLNPVSMSISSRTDAGVHA 61
Query: 342 LSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARY 521
LSN H D+QR + P ++ A+N+ L+ + V V DFHAR+
Sbjct: 62 LSNSAHFDLQRRDDK------PPFAAHILVDALNYHLR--TEQISVTRAHRVAGDFHARF 113
Query: 522 KAQERTYFY 548
A+ RTY Y
Sbjct: 114 CARSRTYVY 122
[54][TOP]
>UniRef100_UPI00016E3732 UPI00016E3732 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E3732
Length = 305
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/129 (41%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQK----QLTCRTVVGVLEEAFCKFLS-QPVSVTCSSRTDAGVHA 341
RYL+ +YIGT +SG K QL + V LE+A K PVS++ SSRTDAGVHA
Sbjct: 7 RYLIFFQYIGTNYSGVVKVPPQQLVKKGVQDHLEDAVRKLKPLNPVSMSISSRTDAGVHA 66
Query: 342 LSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARY 521
LSN H D+QR + P ++ A+N+ L+ + V V DFHAR+
Sbjct: 67 LSNSAHFDLQRRDDK------PPFAAHILVDALNYHLR--TEQISVTRAHRVAGDFHARF 118
Query: 522 KAQERTYFY 548
A+ RTY Y
Sbjct: 119 CARSRTYVY 127
[55][TOP]
>UniRef100_A3UFC3 Pseudouridylate synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633
RepID=A3UFC3_9RHOB
Length = 253
Score = 78.6 bits (192), Expect = 3e-13
Identities = 51/124 (41%), Positives = 65/124 (52%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F G Q+Q +V G LE A K P V + RTD+GVHAL V
Sbjct: 3 RYKLTIEYDGGPFVGWQRQDNGPSVQGALEAAAAKLDGGPREVYGAGRTDSGVHALGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD++ K P + VR A+NH L+ H + V++ V +FHAR+KA R
Sbjct: 63 HVDLE---KDLPAD--------KVRDAINHHLKPH--PIAVVEAVRVTDEFHARFKAHRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 GYIY 113
[56][TOP]
>UniRef100_Q29EU3 GA20054 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=Q29EU3_DROPS
Length = 504
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/135 (39%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRT 323
+ RYLL I YIGT F G QK L +V G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTTFRGIQKTINKLEPQSLDTNSVQGCLELALRVFHPTNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + HVD+ R R G+ P++ + + +N L K + V+ + VP
Sbjct: 61 DAGVHALHSTVHVDLAR----RDGQ---PYDTTTLTGVLNRTLDKQRLPIRVLSSQVVPD 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 TFHCRYHAIGRTYLY 128
[57][TOP]
>UniRef100_Q17EU6 Pseudouridylate synthase n=1 Tax=Aedes aegypti RepID=Q17EU6_AEDAE
Length = 325
Score = 78.6 bits (192), Expect = 3e-13
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTC--------RTVVGVLEEAFCKFLS-QPVSVTCSSRT 323
+ RYL+ + YIGT F G QK L +V GVLE A KF + SSRT
Sbjct: 1 MNRYLINLSYIGTHFRGIQKNLLKDSGYLEDPHSVEGVLEIALKKFAPVNEFKIKLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL N HVD++R S + P++ + + +N + ++D + VP
Sbjct: 61 DAGVHALHNTVHVDLERPSGK-------PYKTYKLTQGLNRTFGSQGLPIRILDTKLVPM 113
Query: 504 DFHARYKAQERTYFY 548
HAR A+ RTY Y
Sbjct: 114 SCHARLCAKSRTYLY 128
[58][TOP]
>UniRef100_B4H5I1 GL16086 n=1 Tax=Drosophila persimilis RepID=B4H5I1_DROPE
Length = 504
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/135 (39%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRT 323
+ RYLL I YIGT F G QK L +V G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTTFRGIQKTINKLEPQSLDTNSVQGCLELALRVFHPTNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + HVD+ R R G+ P++ + + +N L K + V+ + VP
Sbjct: 61 DAGVHALHSTVHVDLAR----RDGQ---PYDTTTLTGVLNRTLDKQRLPIRVLSSQVVPD 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 TFHCRYHAIGRTYLY 128
[59][TOP]
>UniRef100_Q7PA67 Pseudouridylate synthase n=1 Tax=Rickettsia sibirica 246
RepID=Q7PA67_RICSI
Length = 245
Score = 78.2 bits (191), Expect = 4e-13
Identities = 46/124 (37%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT +G Q+Q +V +LEEA KF + V + S RTDAGVHA+ V
Sbjct: 3 RYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + L PH+ + A+N+F + + + V + P++FHAR+ A R
Sbjct: 63 HFDLSK--------YLEPHK---IITAINYFARPY--AVGVWNCELAPNNFHARFSATSR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 YYIY 113
[60][TOP]
>UniRef100_B2Q0E5 Pseudouridylate synthase n=1 Tax=Providencia stuartii ATCC 25827
RepID=B2Q0E5_PROST
Length = 271
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/132 (36%), Positives = 67/132 (50%)
Frame = +3
Query: 153 MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
MS+ ++ R L IEY G+R+ G Q+Q ++V G LE+A K + P++V C+ RTDAG
Sbjct: 1 MSESTKLSRIALGIEYNGSRYYGWQRQQEVKSVQGCLEDALSKVANHPINVFCAGRTDAG 60
Query: 333 VHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFH 512
VHA V H D I K + VN L + D+ V + V +FH
Sbjct: 61 VHATGQVVHFDTPVIRKEAAWTM-----------GVNTHLPE---DIAVRWCKPVDEEFH 106
Query: 513 ARYKAQERTYFY 548
AR+ A R Y Y
Sbjct: 107 ARFSATARRYRY 118
[61][TOP]
>UniRef100_Q92FZ9 tRNA pseudouridine synthase A n=1 Tax=Rickettsia conorii
RepID=TRUA_RICCN
Length = 245
Score = 78.2 bits (191), Expect = 4e-13
Identities = 46/124 (37%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT +G Q+Q +V +LEEA KF + V + S RTDAGVHA+ V
Sbjct: 3 RYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + L PH+ + A+N+F + + + V + P++FHAR+ A R
Sbjct: 63 HFDLSK--------YLEPHK---IITAINYFARPY--AVGVWNCELAPNNFHARFSATSR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 YYIY 113
[62][TOP]
>UniRef100_C3PLZ3 tRNA pseudouridine synthase A n=1 Tax=Rickettsia africae ESF-5
RepID=TRUA_RICAE
Length = 245
Score = 78.2 bits (191), Expect = 4e-13
Identities = 46/124 (37%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT +G Q+Q +V +LEEA KF + V + S RTDAGVHA+ V
Sbjct: 3 RYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + L PH+ + A+N+F + + + V + P++FHAR+ A R
Sbjct: 63 HFDLSK--------YLEPHK---IITAINYFARPY--AVGVWNCELAPNNFHARFSATSR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 YYIY 113
[63][TOP]
>UniRef100_UPI0001B7B6E2 UPI0001B7B6E2 related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7B6E2
Length = 278
Score = 77.8 bits (190), Expect = 5e-13
Identities = 51/100 (51%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Frame = +3
Query: 252 VGVLEEAFCKFLS-QPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVV 428
V L+EA + S +PV T SSRTDAGVHALSN H+DIQ RRPG P P +V
Sbjct: 6 VRFLQEAAKRLNSVEPVRFTISSRTDAGVHALSNAAHLDIQ----RRPGR--PPFSPEIV 59
Query: 429 RKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYFY 548
KA+N L KH + V+ VP+DFHAR+ A RTY Y
Sbjct: 60 TKALNTHL-KHP-AIRVLKAFRVPNDFHARHAATSRTYLY 97
[64][TOP]
>UniRef100_C4YWP4 Pseudouridylate synthase n=1 Tax=Rickettsia endosymbiont of Ixodes
scapularis RepID=C4YWP4_9RICK
Length = 245
Score = 77.8 bits (190), Expect = 5e-13
Identities = 46/124 (37%), Positives = 67/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT +G QKQ +V +LEEA K + V + S RTDAGVHA+ V
Sbjct: 3 RYKITIEYLGTNLAGWQKQAGVMSVQQILEEAIYKLSGEQVILFGSGRTDAGVHAIGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + L PH+ + A+N+F + + + V + P++FHAR+ A R
Sbjct: 63 HFDLSK--------YLEPHK---IIAAINYFARPY--AVGVWNCELAPNNFHARFSATSR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYIY 113
[65][TOP]
>UniRef100_C4K2W2 tRNA pseudouridine synthase A n=1 Tax=Rickettsia peacockii str.
Rustic RepID=TRUA_RICPU
Length = 245
Score = 77.8 bits (190), Expect = 5e-13
Identities = 46/124 (37%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT +G Q+Q +V +LEEA KF + V + S RTDAGVHA+ V
Sbjct: 3 RYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAVGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + L PH+ + A+N+F + + + V + P++FHAR+ A R
Sbjct: 63 HFDLSK--------YLEPHK---IITAINYFARPY--AVGVWNCELAPNNFHARFSATSR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 YYIY 113
[66][TOP]
>UniRef100_B0UP40 tRNA pseudouridine synthase A n=1 Tax=Methylobacterium sp. 4-46
RepID=TRUA_METS4
Length = 250
Score = 77.8 bits (190), Expect = 5e-13
Identities = 49/124 (39%), Positives = 61/124 (49%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY G+ F+G Q+Q RTV LEEA +F PV V C+ RTDAGVHA V
Sbjct: 3 RYKLVVEYDGSGFAGWQRQAADRTVQQALEEAIARFAGAPVRVHCAGRTDAGVHATHQVV 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ R VR A N L+ + V+ V DF AR+ A R
Sbjct: 63 HLDLDR-----------DWRTDTVRDASNAHLR--PEPVAVVSAERVRPDFDARHSALRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[67][TOP]
>UniRef100_B1XY46 Pseudouridylate synthase n=1 Tax=Leptothrix cholodnii SP-6
RepID=B1XY46_LEPCP
Length = 262
Score = 77.4 bits (189), Expect = 6e-13
Identities = 48/124 (38%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L + Y G+ + G Q Q TV VLE A C+F + P+ V+C+ RTDAGVHAL+ V
Sbjct: 2 RLALGLSYRGSAYRGWQSQTNGATVQDVLEAALCRFAATPIRVSCAGRTDAGVHALNQVV 61
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D R EP + N +L D+ V R VP FHAR A+ R
Sbjct: 62 HLDTDR-----------DREPFSWVRGTNTYLPP---DVAVQWCRPVPDAFHARNAARAR 107
Query: 537 TYFY 548
Y Y
Sbjct: 108 RYAY 111
[68][TOP]
>UniRef100_A4BSZ9 Pseudouridylate synthase n=1 Tax=Nitrococcus mobilis Nb-231
RepID=A4BSZ9_9GAMM
Length = 284
Score = 77.4 bits (189), Expect = 6e-13
Identities = 51/124 (41%), Positives = 61/124 (49%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L IEY G+RFSG Q+Q +V LEEA + PV+VTC+ RTDAGVHA V
Sbjct: 27 RVALGIEYDGSRFSGWQRQSHRLSVQVALEEALSRVADHPVTVTCAGRTDAGVHATHQVI 86
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D T PS R V D+ + VR VP FHAR+ A R
Sbjct: 87 HFD------------TTAPRPS--RAWVRGVNSNLPGDIRITWVRAVPQVFHARFAATAR 132
Query: 537 TYFY 548
+Y Y
Sbjct: 133 SYRY 136
[69][TOP]
>UniRef100_B4LCD6 GJ12898 n=1 Tax=Drosophila virilis RepID=B4LCD6_DROVI
Length = 513
Score = 77.4 bits (189), Expect = 6e-13
Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFLSQ-PVSVTCSSRT 323
++RYLL I YIGT F G QK +L +V G LE A F + + SSRT
Sbjct: 1 MRRYLLNIAYIGTNFRGIQKTVNKLEEARLDTNSVQGCLELALRVFRPKNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + HVD++R + ++ + + +N L K + + V+ + VP
Sbjct: 61 DAGVHALHSTVHVDLERSDNKF-------YDTTTLTGVLNRTLDKQNLPIRVLSTQRVPD 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 TFHCRYHAIGRTYLY 128
[70][TOP]
>UniRef100_B0BVL0 tRNA pseudouridine synthase A n=2 Tax=Rickettsia rickettsii
RepID=TRUA_RICRO
Length = 245
Score = 77.4 bits (189), Expect = 6e-13
Identities = 45/124 (36%), Positives = 69/124 (55%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT +G Q+Q +V +LEEA KF + V + + RTDAGVHA+ V
Sbjct: 3 RYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGAGRTDAGVHAVGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + L PH+ + A+N+F++ + + V + P++FHAR+ A R
Sbjct: 63 HFDLSK--------YLEPHK---IITAINYFVRPY--AVGVWNCELAPNNFHARFSATSR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 YYIY 113
[71][TOP]
>UniRef100_A8GUM4 tRNA pseudouridine synthase A n=2 Tax=Rickettsia bellii
RepID=TRUA_RICB8
Length = 245
Score = 77.4 bits (189), Expect = 6e-13
Identities = 43/124 (34%), Positives = 69/124 (55%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY +++EY+GT +G Q+Q +V +LEEA KF + V++ S RTDAGVHA+ +
Sbjct: 3 RYKISVEYLGTNLAGWQRQSGVMSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQIA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + EP + +A+N+F + + + V + V ++FHAR+ A R
Sbjct: 63 HFDLSKY-----------FEPYKIIRAINYFTRPY--IVGVCNCELVDNNFHARFSAIAR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYVY 113
[72][TOP]
>UniRef100_UPI0001B4768C tRNA pseudouridine synthase A n=1 Tax=Brucella sp. 83/13
RepID=UPI0001B4768C
Length = 251
Score = 77.0 bits (188), Expect = 8e-13
Identities = 44/124 (35%), Positives = 64/124 (51%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY GT + G Q+Q V G +E+AF KF + ++++ + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEELTLSAAGRTDAGVHATAQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD+ + VR AVN L D + +++V F AR+ A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 537 TYFY 548
Y Y
Sbjct: 112 HYLY 115
[73][TOP]
>UniRef100_B7RLD9 Pseudouridylate synthase n=1 Tax=Roseobacter sp. GAI101
RepID=B7RLD9_9RHOB
Length = 256
Score = 77.0 bits (188), Expect = 8e-13
Identities = 45/122 (36%), Positives = 65/122 (53%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G + G Q+Q+ TV GV+E+A K + + + RTD GVHAL V
Sbjct: 3 RYALKIEYNGAPYVGWQRQIGLATVQGVIEDALAKVEPRAHKIAAAGRTDGGVHALGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D++R +P + +A+N ++ N + V+D V +FHAR+ AQER
Sbjct: 63 HCDMER-----------DWDPFRLSEALNFHMK--PNPVAVVDCAPVGPEFHARFSAQER 109
Query: 537 TY 542
Y
Sbjct: 110 RY 111
[74][TOP]
>UniRef100_A4U350 Pseudouridylate synthase n=1 Tax=Magnetospirillum gryphiswaldense
RepID=A4U350_9PROT
Length = 245
Score = 77.0 bits (188), Expect = 8e-13
Identities = 50/125 (40%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L IEY GT F G Q+Q +V G +E A +F +VT + RTDAGVHA V
Sbjct: 3 RFKLLIEYHGTPFVGWQRQDNGISVQGEVEAAIFRFCGLETTVTAAGRTDAGVHATGQVI 62
Query: 357 HVDIQR-ISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D+ R +S R V+ A+N+ L+ H + V V VP DFHAR+ A
Sbjct: 63 HFDLDRDVSAER------------VQGALNYHLKPH--PIAVRAVEIVPDDFHARFSALG 108
Query: 534 RTYFY 548
R+Y Y
Sbjct: 109 RSYLY 113
[75][TOP]
>UniRef100_B4MXC6 Pseudouridylate synthase n=1 Tax=Drosophila willistoni
RepID=B4MXC6_DROWI
Length = 313
Score = 77.0 bits (188), Expect = 8e-13
Identities = 51/135 (37%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRT 323
+ RYLL I YIGT F G QK +L +V G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLDQPRLDTNSVQGCLELALRVFRPTNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + HVD++R + P+ + + +N L K + V+ VP
Sbjct: 61 DAGVHALHSTIHVDLERYDGQ-------PYALTTLTGVLNRTLGKQRLPIRVLSTELVPD 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 TFHCRYHAIGRTYLY 128
[76][TOP]
>UniRef100_B4MXC5 GK25867, isoform A n=1 Tax=Drosophila willistoni RepID=B4MXC5_DROWI
Length = 508
Score = 77.0 bits (188), Expect = 8e-13
Identities = 51/135 (37%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRT 323
+ RYLL I YIGT F G QK +L +V G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLDQPRLDTNSVQGCLELALRVFRPTNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + HVD++R + P+ + + +N L K + V+ VP
Sbjct: 61 DAGVHALHSTIHVDLERYDGQ-------PYALTTLTGVLNRTLGKQRLPIRVLSTELVPD 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 TFHCRYHAIGRTYLY 128
[77][TOP]
>UniRef100_Q2WAT0 tRNA pseudouridine synthase A n=1 Tax=Magnetospirillum magneticum
AMB-1 RepID=TRUA_MAGSA
Length = 256
Score = 77.0 bits (188), Expect = 8e-13
Identities = 46/124 (37%), Positives = 64/124 (51%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY GT F+G Q+Q +V G+LE+A K P ++ + RTDAGVHA V
Sbjct: 3 RYRLLVEYDGTPFNGWQRQDKGLSVQGILEKAVEKLCGVPCTLHAAGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD+ R + VR A+N+ ++ + V+ V DFHAR+ A R
Sbjct: 63 HVDLPR-----------DYPADTVRDALNYHMK--PKPVAVVAAELVDEDFHARFSAVGR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 AYLY 113
[78][TOP]
>UniRef100_Q3YS43 tRNA pseudouridine synthase A n=1 Tax=Ehrlichia canis str. Jake
RepID=TRUA_EHRCJ
Length = 245
Score = 77.0 bits (188), Expect = 8e-13
Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + IEY G+ F G Q+Q ++ +LEEA KF + V+ + RTDAGVHAL V
Sbjct: 2 RYKITIEYNGSNFIGWQRQKHLSNSIQEILEEAIFKFSRESVTTYVAGRTDAGVHALGQV 61
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D L + VVR A+N+ L H + V++V +FHAR+ A++
Sbjct: 62 AHFD-----------LTADFDAYVVRNAINYHLIPH--SISVLNVEKTDDEFHARFSAKK 108
Query: 534 RTYFY 548
R Y Y
Sbjct: 109 RHYLY 113
[79][TOP]
>UniRef100_Q2YJQ4 tRNA pseudouridine synthase A n=25 Tax=Brucella RepID=TRUA_BRUA2
Length = 251
Score = 77.0 bits (188), Expect = 8e-13
Identities = 44/124 (35%), Positives = 64/124 (51%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY GT + G Q+Q V G +E+AF KF + ++++ + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD+ + VR AVN L D + +++V F AR+ A+ R
Sbjct: 63 HVDLAK-----------DWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARAR 111
Query: 537 TYFY 548
Y Y
Sbjct: 112 HYLY 115
[80][TOP]
>UniRef100_A2ADA5-2 Isoform 2 of tRNA pseudouridine synthase-like 1 n=1 Tax=Mus
musculus RepID=A2ADA5-2
Length = 280
Score = 77.0 bits (188), Expect = 8e-13
Identities = 47/85 (55%), Positives = 55/85 (64%)
Frame = +3
Query: 294 PVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDL 473
PV T SSRTDAGVHALSN H+DIQ RRPG+ +P P VV KA+N L KH +
Sbjct: 21 PVRFTISSRTDAGVHALSNAAHLDIQ----RRPGQ--SPFSPEVVAKALNTHL-KHP-AI 72
Query: 474 MVIDVRCVPSDFHARYKAQERTYFY 548
V+ VP+DFHAR+ A RTY Y
Sbjct: 73 RVLKAFRVPNDFHARHAATSRTYQY 97
[81][TOP]
>UniRef100_UPI0001795BE2 PREDICTED: similar to LOC617640 protein n=1 Tax=Equus caballus
RepID=UPI0001795BE2
Length = 389
Score = 76.6 bits (187), Expect = 1e-12
Identities = 44/85 (51%), Positives = 53/85 (62%)
Frame = +3
Query: 294 PVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDL 473
PV +T SSRTDAGVHALSN H+D+Q RR G+ P P V+ KA+N L+ +
Sbjct: 141 PVKLTISSRTDAGVHALSNAAHLDVQ----RRSGQ--PPFSPEVLAKALNTHLR--HPAI 192
Query: 474 MVIDVRCVPSDFHARYKAQERTYFY 548
V+ VPSDFHARY A RTY Y
Sbjct: 193 RVLQAFRVPSDFHARYSATSRTYLY 217
[82][TOP]
>UniRef100_Q2GGK1 tRNA pseudouridine synthase A n=2 Tax=Ehrlichia chaffeensis
RepID=TRUA_EHRCR
Length = 245
Score = 76.6 bits (187), Expect = 1e-12
Identities = 48/125 (38%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + IEY G+ F G QKQ + ++ +LE A KF Q +V + RTDAGVHAL V
Sbjct: 2 RYKITIEYNGSNFIGWQKQKHSSNSIQEILENAILKFSQQHTTVYVAGRTDAGVHALGQV 61
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D L T + VVR A+N+ L H + ++ V FHAR+ A++
Sbjct: 62 AHFD-----------LTTNLDTYVVRNAINYHLIPH--AIAILSVEKTDDKFHARFSAKK 108
Query: 534 RTYFY 548
R Y Y
Sbjct: 109 RHYLY 113
[83][TOP]
>UniRef100_UPI00017F3392 tRNA pseudouridine synthase A n=1 Tax=Escherichia coli O157:H7 str.
EC4024 RepID=UPI00017F3392
Length = 270
Score = 76.3 bits (186), Expect = 1e-12
Identities = 47/130 (36%), Positives = 66/130 (50%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
+++ + R L IEY G+++ G Q+Q R+V LE+A + ++P+SV C+ RTDAGVH
Sbjct: 5 EQKPVHRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPISVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H D + K L VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHFDTTAVRKDAAWTL-----------GVNANL---PGDIAVRWVKAVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[84][TOP]
>UniRef100_UPI000160BFD8 tRNA pseudouridine synthase A n=1 Tax=Mycobacterium leprae TN
RepID=UPI000160BFD8
Length = 320
Score = 76.3 bits (186), Expect = 1e-12
Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Frame = +3
Query: 90 RPAKISKIEHPIPIDGDEEEGMSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEE 269
R +K + P P +S+ R++ L I Y GT F+G Q RTV GVL+E
Sbjct: 19 RRSKPRRTRWPTPASLTRPPNISEDVRLR---LDIAYDGTDFAGWAVQAGQRTVAGVLDE 75
Query: 270 AFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDI--QRISKRRPGELLTPH--EPSVVRKA 437
AF PV + + RTD GVHA V HVDI +SK P +PH +P +
Sbjct: 76 AFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANP---RSPHTGDPEFL-PL 131
Query: 438 VNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYFY 548
+ + D+ V+D+ C P F AR+ A R Y Y
Sbjct: 132 LRRLSRLLPVDVRVLDIACAPVGFDARFSALRRHYRY 168
[85][TOP]
>UniRef100_C8SJ05 tRNA pseudouridine synthase A n=1 Tax=Mesorhizobium opportunistum
WSM2075 RepID=C8SJ05_9RHIZ
Length = 249
Score = 76.3 bits (186), Expect = 1e-12
Identities = 49/124 (39%), Positives = 65/124 (52%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L IEY G+ F+G Q Q +V +EEA KF + V + + RTDAGVHA + V
Sbjct: 3 RFRLDIEYDGSLFAGWQHQADQPSVQQAIEEAIEKFCGEAVRLRAAGRTDAGVHATAQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD + K PG+ VR AVN LQ ++++ VP DF AR+ A R
Sbjct: 63 HVD---LVKAWPGD--------KVRDAVNAHLQAAGARVVILKAGVVPDDFDARFSATGR 111
Query: 537 TYFY 548
Y Y
Sbjct: 112 HYLY 115
[86][TOP]
>UniRef100_A8F079 tRNA pseudouridine synthase A n=1 Tax=Rickettsia canadensis str.
McKiel RepID=TRUA_RICCK
Length = 245
Score = 76.3 bits (186), Expect = 1e-12
Identities = 45/124 (36%), Positives = 68/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT +G Q+Q +V +LEEA KF + V + S RTDAGVHA+ V
Sbjct: 3 RYKITIEYLGTDLAGWQRQAGIMSVQQILEEAIYKFSGEQVVLFGSGRTDAGVHAIGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + L H+ + A+N+F + + ++V + P++FHAR+ A R
Sbjct: 63 HFDLSK--------NLETHK---IITAINYFARPY--SVIVWNCEMAPNNFHARFSAVSR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYIY 113
[87][TOP]
>UniRef100_A7IKI9 tRNA pseudouridine synthase A n=1 Tax=Xanthobacter autotrophicus
Py2 RepID=TRUA_XANP2
Length = 245
Score = 75.9 bits (185), Expect = 2e-12
Identities = 48/124 (38%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY GT ++G Q Q +TV G L +AF +F + V V + RTDAGVHA V
Sbjct: 3 RYKLTIEYDGTPYAGWQIQADQQTVQGALAQAFKRFCGEDVHVAGAGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD+ R VR A+ L+ H + V+ VP F AR+ A +R
Sbjct: 63 HVDLSR-----------HWRSDTVRDAMTAQLRPH--PIAVLSAEEVPDSFDARFSATKR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYLY 113
[88][TOP]
>UniRef100_A5W6Y1 Pseudouridylate synthase n=1 Tax=Pseudomonas putida F1
RepID=A5W6Y1_PSEP1
Length = 332
Score = 75.5 bits (184), Expect = 2e-12
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 1/138 (0%)
Frame = +3
Query: 138 DEEEGMSQKQRIQRYLLAIEYIGTRFSGSQKQLT-CRTVVGVLEEAFCKFLSQPVSVTCS 314
D S + R L +EY G R+ G Q+Q + +V LE+A K ++P+SV C+
Sbjct: 53 DTATAESAAEGYSRIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCA 112
Query: 315 SRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRC 494
RTDAGVH V H D + + R + T +F H D+ V+ R
Sbjct: 113 GRTDAGVHGCGQVVHFDTRAVRDERAWTMGT------------NFNLPH--DISVVWSRP 158
Query: 495 VPSDFHARYKAQERTYFY 548
+P+DFHAR+KA R Y Y
Sbjct: 159 MPADFHARFKACARRYRY 176
[89][TOP]
>UniRef100_B4QKT6 Pseudouridylate synthase n=1 Tax=Drosophila simulans
RepID=B4QKT6_DROSI
Length = 499
Score = 75.5 bits (184), Expect = 2e-12
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRT 323
+ RYLL I YIGT F G QK +L ++ G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSIQGCLELALQVFHPTNEIHTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + VD++R + + P++ +++ +N L K + V+ + V +
Sbjct: 61 DAGVHALHSTVQVDLERTNGQ-------PYDTTILTGVLNRTLNKQRLPIRVLSSKLVAN 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 SFHCRYDATGRTYLY 128
[90][TOP]
>UniRef100_B4HVB8 Pseudouridylate synthase n=1 Tax=Drosophila sechellia
RepID=B4HVB8_DROSE
Length = 499
Score = 75.5 bits (184), Expect = 2e-12
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRT 323
+ RYLL I YIGT F G QK +L ++ G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLERSRLDTNSIQGCLELALQVFHPTNEIHTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + VD++R + + P++ +++ +N L K + V+ + V +
Sbjct: 61 DAGVHALHSTVQVDLERTNGQ-------PYDTTILTGVLNRTLNKQRLPIRVLSSKLVAN 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 SFHCRYDATGRTYLY 128
[91][TOP]
>UniRef100_Q98D55 tRNA pseudouridine synthase A n=1 Tax=Mesorhizobium loti
RepID=TRUA_RHILO
Length = 248
Score = 75.5 bits (184), Expect = 2e-12
Identities = 48/124 (38%), Positives = 65/124 (52%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L IEY G+ F+G Q Q +V +E+A KF + V + + RTDAGVHA + V
Sbjct: 3 RFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAVRLRAAGRTDAGVHASAQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD ++K PG+ VR AVN LQ + ++ VP DF AR+ A R
Sbjct: 63 HVD---LAKPWPGD--------KVRDAVNAHLQAAGAHVAILKAAIVPDDFDARFSATGR 111
Query: 537 TYFY 548
Y Y
Sbjct: 112 HYLY 115
[92][TOP]
>UniRef100_A4YLC1 tRNA pseudouridine synthase A n=1 Tax=Bradyrhizobium sp. ORS278
RepID=TRUA_BRASO
Length = 245
Score = 75.5 bits (184), Expect = 2e-12
Identities = 50/124 (40%), Positives = 61/124 (49%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F G Q Q T +V GVLE A P V S RTDAGVHA V
Sbjct: 3 RYKLTIEYDGAPFCGWQLQETLPSVQGVLEAAVQATCGVPTRVHGSGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H DI + P +R A+N L+ N + V+D + VP F AR+ A++R
Sbjct: 63 HCDIDK-----------EFRPDKLRDALNAHLR--PNPVAVLDAQIVPDTFEARFSARKR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[93][TOP]
>UniRef100_UPI00005A0CDD PREDICTED: similar to pseudouridylate synthase-like 1 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A0CDD
Length = 294
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/128 (42%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVL---EEAFCKFLSQ-PVSVTCSSRTDAGVHAL 344
R L+ +Y G +G + VGVL EEA + S PV T SSRTDAGVHAL
Sbjct: 11 RSLVYSQYWGRALNGVAAVRGSQRAVGVLNYLEEAAKRLNSVVPVRFTISSRTDAGVHAL 70
Query: 345 SNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
SN H+D+Q RR G+ P P V+ +A+N ++ + V+ VPSDFHAR+
Sbjct: 71 SNAAHLDVQ----RRSGQ--PPFSPEVLAEALNAHVR--HPAIRVLQAFRVPSDFHARHA 122
Query: 525 AQERTYFY 548
A RTY Y
Sbjct: 123 ATSRTYLY 130
[94][TOP]
>UniRef100_UPI0000EB41D8 tRNA pseudouridine synthase-like 1 (EC 5.4.99.-) (tRNA-uridine
isomerase-like 1) (tRNA pseudouridylate synthase-like
1). n=1 Tax=Canis lupus familiaris RepID=UPI0000EB41D8
Length = 303
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/128 (42%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVL---EEAFCKFLSQ-PVSVTCSSRTDAGVHAL 344
R L+ +Y G +G + VGVL EEA + S PV T SSRTDAGVHAL
Sbjct: 13 RSLVYSQYWGRALNGVAAVRGSQRAVGVLNYLEEAAKRLNSVVPVRFTISSRTDAGVHAL 72
Query: 345 SNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
SN H+D+Q RR G+ P P V+ +A+N ++ + V+ VPSDFHAR+
Sbjct: 73 SNAAHLDVQ----RRSGQ--PPFSPEVLAEALNAHVR--HPAIRVLQAFRVPSDFHARHA 124
Query: 525 AQERTYFY 548
A RTY Y
Sbjct: 125 ATSRTYLY 132
[95][TOP]
>UniRef100_Q5GSK8 Pseudouridylate synthase n=1 Tax=Wolbachia endosymbiont strain TRS
of Brugia malayi RepID=Q5GSK8_WOLTR
Length = 249
Score = 75.1 bits (183), Expect = 3e-12
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + IEY G+ FSG QKQ + ++ +E A F + V++ C RTDAGVHAL V
Sbjct: 6 RYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGEKVTLHCGGRTDAGVHALGQV 65
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D++R E +R A+N+ L+ ++V++ V + FH+R+ A++
Sbjct: 66 AHFDMER-----------KFELYKIRNAINYHLK--SIPIVVLNAETVDNTFHSRFSAKK 112
Query: 534 RTYFY 548
R Y Y
Sbjct: 113 RYYEY 117
[96][TOP]
>UniRef100_C1B043 Pseudouridylate synthase n=1 Tax=Rhodococcus opacus B4
RepID=C1B043_RHOOB
Length = 270
Score = 74.7 bits (182), Expect = 4e-12
Identities = 48/121 (39%), Positives = 62/121 (51%)
Frame = +3
Query: 186 LAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVD 365
L + Y GT FSG +Q RTV G +EE L P+ +T + RTDAGVHA V HVD
Sbjct: 3 LDVAYDGTDFSGWARQNGLRTVCGEIEEKLGAVLRSPLQLTVAGRTDAGVHATGQVAHVD 62
Query: 366 IQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYF 545
+ P E L P EPS + + + FL K D+ + + P F AR+ A R Y
Sbjct: 63 V-------PVEAL-PDEPSRLVRRLARFLPK---DVRIKQISFAPEHFDARFSAMRRHYE 111
Query: 546 Y 548
Y
Sbjct: 112 Y 112
[97][TOP]
>UniRef100_C5CSH0 tRNA pseudouridine synthase A n=1 Tax=Variovorax paradoxus S110
RepID=TRUA_VARPS
Length = 270
Score = 74.7 bits (182), Expect = 4e-12
Identities = 47/124 (37%), Positives = 57/124 (45%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L I Y G + G Q Q + RTV LE A KF +QP+ C+ RTDAGVHAL V
Sbjct: 2 RLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALAKFAAQPIGTLCAGRTDAGVHALMQVV 61
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D EP + N FL +D+ V + VP +FH R A R
Sbjct: 62 HFD-----------TTVEREPFSWMRGTNRFL---PDDIAVQWAQPVPDEFHCRASALAR 107
Query: 537 TYFY 548
Y Y
Sbjct: 108 RYLY 111
[98][TOP]
>UniRef100_Q31YE0 tRNA pseudouridine synthase A n=1 Tax=Shigella boydii Sb227
RepID=TRUA_SHIBS
Length = 270
Score = 74.7 bits (182), Expect = 4e-12
Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +3
Query: 153 MSQKQRIQRYLLA--IEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTD 326
MS +Q++ Y +A IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 327 AGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSD 506
AGVH V H E P + + VN L +D+ V V+ VP D
Sbjct: 61 AGVHGTGQVVHF-----------ETTAPRKDAAWTLGVNANL---PDDIAVRWVKAVPDD 106
Query: 507 FHARYKAQERTYFY 548
FHAR+ A R Y Y
Sbjct: 107 FHARFSATARRYRY 120
[99][TOP]
>UniRef100_Q2S4S9 tRNA pseudouridine synthase A n=1 Tax=Salinibacter ruber DSM 13855
RepID=TRUA_SALRD
Length = 265
Score = 74.7 bits (182), Expect = 4e-12
Identities = 55/128 (42%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY GT F G Q Q T TV G LEEA + VT S RTDAGVHA V
Sbjct: 3 RYRLLVEYDGTDFHGWQIQPTVPTVQGALEEAVDTVVGTACRVTGSGRTDAGVHARGQVA 62
Query: 357 HVDI--QRISKRRPGEL--LTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
HVD+ R R G L LTP +V R V P DFHARY
Sbjct: 63 HVDLPETRDPYRLRGSLNGLTPDAVAVRR------------------VERAPDDFHARYD 104
Query: 525 AQERTYFY 548
A+ R Y Y
Sbjct: 105 ARRRRYHY 112
[100][TOP]
>UniRef100_B6IPI0 tRNA pseudouridine synthase A n=1 Tax=Rhodospirillum centenum SW
RepID=TRUA_RHOCS
Length = 245
Score = 74.7 bits (182), Expect = 4e-12
Identities = 48/126 (38%), Positives = 66/126 (52%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+QR+ L +EY G F G Q+Q +V LEEA +F + V+V C+ RTDAGVHAL+
Sbjct: 1 MQRWKLTLEYDGRPFVGWQRQDNGPSVQQALEEAIYRFTQETVTVFCAGRTDAGVHALAM 60
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V VD+ R + V+ A+N L+ H + V+ V V DFHAR+
Sbjct: 61 VASVDLAREA-----------TADKVQAALNFHLKPH--PVAVLRVEPVAPDFHARFSCL 107
Query: 531 ERTYFY 548
R Y Y
Sbjct: 108 GRAYLY 113
[101][TOP]
>UniRef100_UPI00015B44A3 PREDICTED: similar to CG34140-PA n=1 Tax=Nasonia vitripennis
RepID=UPI00015B44A3
Length = 298
Score = 74.3 bits (181), Expect = 5e-12
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Frame = +3
Query: 174 QRYLLAIEYIGTRFSGSQKQLT-----CRTVVGVLEEAFCKF-LSQPVSVTCSSRTDAGV 335
+RYLL + YIGT + GSQK + T+ G +E + +F S +++ + RTDAGV
Sbjct: 6 RRYLLKLSYIGTSYRGSQKHVNNAVVDIDTIQGAIEYSMRRFNFSNIPTISLAGRTDAGV 65
Query: 336 HALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHA 515
HAL HVD++ G L T + + + +N L ++++ ++ V DFHA
Sbjct: 66 HALCTSAHVDLEH-----SGTLDTEY----LVRMMNRNLINANHEIRIMSAHEVSKDFHA 116
Query: 516 RYKAQERTYFY 548
RY A+ RTY Y
Sbjct: 117 RYSAKSRTYLY 127
[102][TOP]
>UniRef100_Q3A9U9 Pseudouridylate synthase n=1 Tax=Carboxydothermus hydrogenoformans
Z-2901 RepID=Q3A9U9_CARHZ
Length = 246
Score = 74.3 bits (181), Expect = 5e-12
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALS 347
+ + L I Y GT F+G QKQ T +T+ G+LEE K L +PV V + RTDAGVHAL
Sbjct: 4 LPNFKLTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILKEPVKVIGAGRTDAGVHALG 63
Query: 348 NVCHVDIQ-RISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
V + + + E+L P+ +R V++ VP DFHARY
Sbjct: 64 QVVNFSAPWKAPVDKIPEILNNTLPTAIR---------------VLEAEIVPDDFHARYS 108
Query: 525 AQERTYFY 548
A+++ Y Y
Sbjct: 109 ARKKEYRY 116
[103][TOP]
>UniRef100_C2AM23 Pseudouridylate synthase n=1 Tax=Tsukamurella paurometabola DSM
20162 RepID=C2AM23_TSUPA
Length = 301
Score = 74.3 bits (181), Expect = 5e-12
Identities = 53/140 (37%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Frame = +3
Query: 135 GDEEEG--MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVT 308
GDE + + + + RY L I Y GT FSG +Q RTV GV+EEA L PV +T
Sbjct: 15 GDERDSPPVESDRDMTRYRLDIAYDGTDFSGWARQPERRTVCGVVEEAIGTVLRTPVQLT 74
Query: 309 CSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDV 488
+ RTDAGVHA V HVD +L P +VR+ Q D+ V +
Sbjct: 75 VAGRTDAGVHATGQVAHVDT---------DLALPE--GLVRRLARMLPQ----DVRVTAI 119
Query: 489 RCVPSDFHARYKAQERTYFY 548
P++F AR+ A R Y Y
Sbjct: 120 AEAPAEFDARFSALRRHYEY 139
[104][TOP]
>UniRef100_Q0E8K6 Pseudouridylate synthase n=1 Tax=Drosophila melanogaster
RepID=Q0E8K6_DROME
Length = 306
Score = 74.3 bits (181), Expect = 5e-12
Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRTDA 329
RYLL I YIGT F G QK +L +++ G LE A F + + SSRTDA
Sbjct: 3 RYLLNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELALQVFHPTNEIHTVLSSRTDA 62
Query: 330 GVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDF 509
GVHAL + VD++R + + P++ +++ +N L K + V+ + V + F
Sbjct: 63 GVHALHSTVQVDLERPNGQ-------PYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSF 115
Query: 510 HARYKAQERTYFY 548
H RY A RTY Y
Sbjct: 116 HCRYDAIGRTYLY 128
[105][TOP]
>UniRef100_B4L909 Pseudouridylate synthase n=1 Tax=Drosophila mojavensis
RepID=B4L909_DROMO
Length = 320
Score = 74.3 bits (181), Expect = 5e-12
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLT--------CRTVVGVLEEAFCKFLS-QPVSVTCSSRT 323
+ RYLL I YIGTRF G QK + +V G LE A F + SSRT
Sbjct: 1 MHRYLLNISYIGTRFRGIQKTINKLEESRVDTNSVQGCLELALRVFRPVNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + HVD++R + ++ +++ +N L K + V+ + V
Sbjct: 61 DAGVHALHSTVHVDLERNDGK-------CYDTTILTGVLNRTLDKQSLPIRVLSTQRVAD 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 TFHCRYHAIGRTYLY 128
[106][TOP]
>UniRef100_B4L908 Pseudouridylate synthase n=1 Tax=Drosophila mojavensis
RepID=B4L908_DROMO
Length = 499
Score = 74.3 bits (181), Expect = 5e-12
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLT--------CRTVVGVLEEAFCKFLS-QPVSVTCSSRT 323
+ RYLL I YIGTRF G QK + +V G LE A F + SSRT
Sbjct: 1 MHRYLLNISYIGTRFRGIQKTINKLEESRVDTNSVQGCLELALRVFRPVNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + HVD++R + ++ +++ +N L K + V+ + V
Sbjct: 61 DAGVHALHSTVHVDLERNDGK-------CYDTTILTGVLNRTLDKQSLPIRVLSTQRVAD 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 TFHCRYHAIGRTYLY 128
[107][TOP]
>UniRef100_B8CPW5 tRNA pseudouridine synthase A n=1 Tax=Shewanella piezotolerans WP3
RepID=TRUA_SHEPW
Length = 261
Score = 74.3 bits (181), Expect = 5e-12
Identities = 47/124 (37%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L IEY G+R+ G Q+QL +V G LE+A K ++P++V C+ RTD GVH V
Sbjct: 2 RVALGIEYDGSRYYGWQRQLDVDSVQGQLEKALSKVANEPITVQCAGRTDTGVHGTGQVV 61
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D I K L VN L +D+ V V+ V +FHAR+ A R
Sbjct: 62 HFDTNAIRKETAWTL-----------GVNVNL---PDDIAVRWVKVVDEEFHARFSATAR 107
Query: 537 TYFY 548
Y Y
Sbjct: 108 RYRY 111
[108][TOP]
>UniRef100_Q4UJT2 tRNA pseudouridine synthase A n=1 Tax=Rickettsia felis
RepID=TRUA_RICFE
Length = 245
Score = 74.3 bits (181), Expect = 5e-12
Identities = 45/124 (36%), Positives = 67/124 (54%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY+GT +G Q+Q +V +LEEA KF + V + S RTDAGVHA+ V
Sbjct: 3 RYKITIEYLGTNLAGWQRQAGVISVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + L PH+ + A+N+F + + + V + ++FHAR+ A R
Sbjct: 63 HFDLSK--------HLEPHK---IITAINYFARPY--AVGVWNCELASNNFHARFSATSR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYIY 113
[109][TOP]
>UniRef100_A9D7F5 Pseudouridylate synthase n=1 Tax=Shewanella benthica KT99
RepID=A9D7F5_9GAMM
Length = 261
Score = 73.9 bits (180), Expect = 7e-12
Identities = 48/124 (38%), Positives = 61/124 (49%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L IEY G+++ G Q+QL TV LE A K +QP+SV C+ RTD+GVH V
Sbjct: 2 RVALGIEYDGSKYYGWQRQLEVDTVQAQLERALSKVANQPISVHCAGRTDSGVHGTGQVV 61
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H + I K L VN L +D+ V V+ V DFHAR+ A R
Sbjct: 62 HFETTAIRKESAWTL-----------GVNVNL---PDDIAVKWVKLVDDDFHARFSATAR 107
Query: 537 TYFY 548
Y Y
Sbjct: 108 RYRY 111
[110][TOP]
>UniRef100_Q8UIC9 tRNA pseudouridine synthase A n=1 Tax=Agrobacterium tumefaciens
str. C58 RepID=TRUA_AGRT5
Length = 266
Score = 73.9 bits (180), Expect = 7e-12
Identities = 43/124 (34%), Positives = 61/124 (49%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ + +EY GT + G Q+Q +V G LE A + VS+ + RTD+GVHA+ V
Sbjct: 3 RFRMTVEYDGTPYYGWQRQENGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ R EP +R A+N L + V+D V DF AR+ A R
Sbjct: 63 HIDLSR-----------DWEPYKLRNALNAHLAMAGEAVAVLDAAAVTEDFDARFSALRR 111
Query: 537 TYFY 548
Y Y
Sbjct: 112 HYLY 115
[111][TOP]
>UniRef100_UPI00006A081F tRNA pseudouridine synthase-like 1 (EC 5.4.99.-) (tRNA-uridine
isomerase-like 1) (tRNA pseudouridylate synthase-like
1). n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI00006A081F
Length = 227
Score = 73.6 bits (179), Expect = 9e-12
Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGV---LEEAFCKFLSQPVSVT---CSSRTDAGVH 338
RYL+ +Y GT++SG + ++V+GV LE A K +PV SSRTD+GVH
Sbjct: 7 RYLVFFQYYGTKYSGVMETPVTQSVLGVQNYLEMAAQKL--RPVGTVKFFISSRTDSGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
A+ N HVDIQR + + P ++ +A+NH LQ + ++ V +FHAR
Sbjct: 65 AICNSAHVDIQRANGK------PPFTEDILVQALNHHLQ--PEPIRLLKAVRVCDNFHAR 116
Query: 519 YKAQERTYFY 548
+KA RTY Y
Sbjct: 117 HKALSRTYVY 126
[112][TOP]
>UniRef100_B0KF93 Pseudouridylate synthase n=1 Tax=Pseudomonas putida GB-1
RepID=B0KF93_PSEPG
Length = 286
Score = 73.6 bits (179), Expect = 9e-12
Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 1/138 (0%)
Frame = +3
Query: 138 DEEEGMSQKQRIQRYLLAIEYIGTRFSGSQKQLT-CRTVVGVLEEAFCKFLSQPVSVTCS 314
D S + R L +EY G R+ G Q+Q + +V LE+A K ++P+SV C+
Sbjct: 7 DTATAESAAEGFSRIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICA 66
Query: 315 SRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRC 494
RTDAGVH + H D + + R + T +F H D+ V+ +
Sbjct: 67 GRTDAGVHGCGQIVHFDTRAVRDERAWTMGT------------NFNLPH--DISVVWSQP 112
Query: 495 VPSDFHARYKAQERTYFY 548
+P+DFHAR+KA R Y Y
Sbjct: 113 MPADFHARFKACARRYRY 130
[113][TOP]
>UniRef100_A8ZTL2 Pseudouridylate synthase n=1 Tax=Desulfococcus oleovorans Hxd3
RepID=A8ZTL2_DESOH
Length = 252
Score = 73.6 bits (179), Expect = 9e-12
Identities = 49/125 (39%), Positives = 63/125 (50%)
Frame = +3
Query: 174 QRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
+ + L IEY G F G Q Q RTV G + A Q VSV S RTDAGVHA++ V
Sbjct: 3 KNFRLIIEYDGACFHGWQIQKDLRTVQGEITGALASITGQAVSVIGSGRTDAGVHAMAQV 62
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
T EP ++KA+N L K D+++ D R V +FHARY A+
Sbjct: 63 ASFICD-----------TRLEPGTLQKALNGILAK---DIVIHDCREVSLNFHARYSAKS 108
Query: 534 RTYFY 548
+TY Y
Sbjct: 109 KTYRY 113
[114][TOP]
>UniRef100_Q15VG2 tRNA pseudouridine synthase A n=1 Tax=Pseudoalteromonas atlantica
T6c RepID=TRUA_PSEA6
Length = 263
Score = 73.6 bits (179), Expect = 9e-12
Identities = 46/124 (37%), Positives = 63/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L +EY G RF G Q+Q +V LEEA + ++P+ V C+ RTDAGVHA V
Sbjct: 2 RIALGVEYDGARFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQVV 61
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H + + +RP T +N +L + + V V+ VP DFHAR+ A R
Sbjct: 62 HFE---TTSQRPDRAWT--------LGINTYL---PDTISVRWVKAVPEDFHARFSATAR 107
Query: 537 TYFY 548
Y Y
Sbjct: 108 RYRY 111
[115][TOP]
>UniRef100_B0T1S6 tRNA pseudouridine synthase A n=1 Tax=Caulobacter sp. K31
RepID=TRUA_CAUSK
Length = 249
Score = 73.6 bits (179), Expect = 9e-12
Identities = 46/124 (37%), Positives = 63/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G ++G Q Q + +V G +E A F Q + + + RTD GVHA + V
Sbjct: 3 RYRLTIEYDGRPYNGFQAQASQPSVQGAIEAAVKAFTGQTIRIAAAGRTDTGVHATAQVV 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD++R P E V A+N L + + V+D V D+HAR+ A ER
Sbjct: 63 HVDLER---DWPAE--------TVMNALNAHLVR--EAISVLDAVVVSDDWHARFSANER 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 RYLY 113
[116][TOP]
>UniRef100_UPI0000DAEF6D hypothetical protein Wendoof_01000930 n=1 Tax=Wolbachia
endosymbiont of Drosophila willistoni TSC#14030-0811.24
RepID=UPI0000DAEF6D
Length = 166
Score = 73.2 bits (178), Expect = 1e-11
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + +EY G+ FSG QKQ + ++ +E A F + V++ C RTDAGVHAL V
Sbjct: 2 RYKITVEYNGSNFSGWQKQQHSANSIQEKIENAIFNFSGEKVTLYCGGRTDAGVHALGQV 61
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D+++ E +R A+N+ L+ ++V++ V FHAR+ A++
Sbjct: 62 AHFDMEK-----------EFELYRIRNAINYHLK--SIPIVVLNAEVVDDAFHARFSAKK 108
Query: 534 RTYFY 548
R Y Y
Sbjct: 109 RYYEY 113
[117][TOP]
>UniRef100_B1J537 Pseudouridylate synthase n=1 Tax=Pseudomonas putida W619
RepID=B1J537_PSEPW
Length = 284
Score = 73.2 bits (178), Expect = 1e-11
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Frame = +3
Query: 156 SQKQRIQRYLLAIEYIGTRFSGSQKQLT-CRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
S + R L +EY G+R+ G Q+Q + +V LE+A K ++P++V C+ RTDAG
Sbjct: 11 SAAEGFTRIALGVEYKGSRYRGWQRQASGVPSVQQALEQALSKVANEPITVVCAGRTDAG 70
Query: 333 VHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFH 512
VH + H D + R L T +F H D+ V+ R +P+DFH
Sbjct: 71 VHGCGQIVHFDTRANRDERAWTLGT------------NFNLPH--DISVVWSRPMPADFH 116
Query: 513 ARYKAQERTYFY 548
AR+KA R Y Y
Sbjct: 117 ARFKATARRYRY 128
[118][TOP]
>UniRef100_A1WY08 Pseudouridylate synthase n=1 Tax=Halorhodospira halophila SL1
RepID=A1WY08_HALHL
Length = 266
Score = 73.2 bits (178), Expect = 1e-11
Identities = 48/132 (36%), Positives = 66/132 (50%)
Frame = +3
Query: 153 MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
M+++ QR L +EY GT FSG Q+Q +V LE A + + PV+V C+ RTDAG
Sbjct: 1 MAERGAEQRIALVLEYDGTGFSGWQRQDDAPSVQEALEGAVSRIANHPVAVVCAGRTDAG 60
Query: 333 VHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFH 512
VHA + V H D + RP + + + V+ V V +DFH
Sbjct: 61 VHAAAQVVHFD---TTASRPLHAWVLGTNAQLPETVS-----------VRSAHAVDADFH 106
Query: 513 ARYKAQERTYFY 548
ARY+AQ R Y Y
Sbjct: 107 ARYQAQRRGYRY 118
[119][TOP]
>UniRef100_C4C5H0 Pseudouridylate synthase n=1 Tax=Sebaldella termitidis ATCC 33386
RepID=C4C5H0_9FUSO
Length = 244
Score = 73.2 bits (178), Expect = 1e-11
Identities = 41/121 (33%), Positives = 64/121 (52%)
Frame = +3
Query: 186 LAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVD 365
+ EY G++FSG Q+QL +TV G +EE + ++ V++ S RTD GVHAL V +
Sbjct: 6 IVYEYDGSKFSGFQRQLNKKTVQGSIEEVIKNYFNEEVNLLSSGRTDKGVHALGQVSNFF 65
Query: 366 IQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYF 545
+++ P +++ +N L + V D + SDFHAR+ A+ RTY
Sbjct: 66 MEK-----------SISPDIIKGILNRAL---SGKIRVTDAKEADSDFHARFSAKTRTYL 111
Query: 546 Y 548
Y
Sbjct: 112 Y 112
[120][TOP]
>UniRef100_A9CXA0 Pseudouridylate synthase n=1 Tax=Hoeflea phototrophica DFL-43
RepID=A9CXA0_9RHIZ
Length = 255
Score = 73.2 bits (178), Expect = 1e-11
Identities = 45/124 (36%), Positives = 61/124 (49%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G+ ++G Q+Q ++ +E A F Q VS+ + RTDAGVHA V
Sbjct: 3 RYRLDIEYDGSGYAGWQRQDDHPSIQQAIETAIHGFCGQAVSIRGAGRTDAGVHAWGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD++ VR A+N LQ + ++ R VP DF AR+ A R
Sbjct: 63 HVDLE-----------NQWSDDTVRDAINAHLQMARERVAILAAREVPEDFDARFSATRR 111
Query: 537 TYFY 548
Y Y
Sbjct: 112 HYVY 115
[121][TOP]
>UniRef100_A3JQ02 Pseudouridylate synthase n=1 Tax=Rhodobacterales bacterium HTCC2150
RepID=A3JQ02_9RHOB
Length = 265
Score = 73.2 bits (178), Expect = 1e-11
Identities = 48/126 (38%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F+G Q+Q +TV G +E A K + +T + RTDAGVHA+ V
Sbjct: 3 RYALKIEYHGAPFAGWQRQPELQTVQGAIEAAIRKLEAGNAGITAAGRTDAGVHAVGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRC--VPSDFHARYKAQ 530
HVD+ + + + +A+NH H L V V C V DFHAR+ A
Sbjct: 63 HVDMAK-----------SWDLFRLTEAINH----HLKPLPVAIVACAQVDDDFHARFGAL 107
Query: 531 ERTYFY 548
ER Y +
Sbjct: 108 ERQYLF 113
[122][TOP]
>UniRef100_B4PC20 Pseudouridylate synthase n=1 Tax=Drosophila yakuba
RepID=B4PC20_DROYA
Length = 306
Score = 73.2 bits (178), Expect = 1e-11
Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFLS-QPVSVTCSSRT 323
+ RYLL I YIGT F G QK +L +V G LE A F + SSRT
Sbjct: 1 MNRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALRVFHPINEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + VD++R + + P++ + + +N L K + V+ + V +
Sbjct: 61 DAGVHALHSTVQVDLERPNGQ-------PYDTTTLTGVLNRTLNKQGLPIRVLSSKLVSN 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 SFHCRYHAIGRTYLY 128
[123][TOP]
>UniRef100_B4PC19 Pseudouridylate synthase n=1 Tax=Drosophila yakuba
RepID=B4PC19_DROYA
Length = 495
Score = 73.2 bits (178), Expect = 1e-11
Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFLS-QPVSVTCSSRT 323
+ RYLL I YIGT F G QK +L +V G LE A F + SSRT
Sbjct: 1 MNRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALRVFHPINEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + VD++R + + P++ + + +N L K + V+ + V +
Sbjct: 61 DAGVHALHSTVQVDLERPNGQ-------PYDTTTLTGVLNRTLNKQGLPIRVLSSKLVSN 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 SFHCRYHAIGRTYLY 128
[124][TOP]
>UniRef100_B3NEK9 Pseudouridylate synthase n=1 Tax=Drosophila erecta
RepID=B3NEK9_DROER
Length = 288
Score = 73.2 bits (178), Expect = 1e-11
Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRT 323
+ RYLL I YIGT F G QK +L +V G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALQVFHPTNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + VD++R + + P++ + + +N L K + V+ + V +
Sbjct: 61 DAGVHALHSTVQVDLERPNGQ-------PYDTTTLTGVLNRTLNKQRLPIRVLSSQLVDN 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 SFHCRYDAIGRTYLY 128
[125][TOP]
>UniRef100_B3NEK8 Pseudouridylate synthase n=1 Tax=Drosophila erecta
RepID=B3NEK8_DROER
Length = 499
Score = 73.2 bits (178), Expect = 1e-11
Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQK--------QLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRT 323
+ RYLL I YIGT F G QK +L +V G LE A F + + SSRT
Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALQVFHPTNEIQTVLSSRT 60
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHAL + VD++R + + P++ + + +N L K + V+ + V +
Sbjct: 61 DAGVHALHSTVQVDLERPNGQ-------PYDTTTLTGVLNRTLNKQRLPIRVLSSQLVDN 113
Query: 504 DFHARYKAQERTYFY 548
FH RY A RTY Y
Sbjct: 114 SFHCRYDAIGRTYLY 128
[126][TOP]
>UniRef100_Q73G93 tRNA pseudouridine synthase A n=1 Tax=Wolbachia endosymbiont of
Drosophila melanogaster RepID=TRUA_WOLPM
Length = 245
Score = 73.2 bits (178), Expect = 1e-11
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + +EY G+ FSG QKQ + ++ +E A F + V++ C RTDAGVHAL V
Sbjct: 2 RYKITVEYNGSNFSGWQKQQHSANSIQEKIENAIFNFSGEKVTLYCGGRTDAGVHALGQV 61
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D+++ E +R A+N+ L+ ++V++ V FHAR+ A++
Sbjct: 62 AHFDMEK-----------EFELYRIRNAINYHLK--SIPIVVLNAEVVDDAFHARFSAKK 108
Query: 534 RTYFY 548
R Y Y
Sbjct: 109 RYYEY 113
[127][TOP]
>UniRef100_Q8CWM6 tRNA pseudouridine synthase A n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=TRUA_THEEB
Length = 284
Score = 73.2 bits (178), Expect = 1e-11
Identities = 46/132 (34%), Positives = 64/132 (48%)
Frame = +3
Query: 153 MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
++ Q QR L I+Y GT F G Q+Q+ RTV V+E+A ++ PVSV + RTD G
Sbjct: 5 IAPSQSGQRLALLIQYQGTHFHGWQRQVGQRTVQEVIEQAIASVVNHPVSVVAAGRTDTG 64
Query: 333 VHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFH 512
VHA V HV T + P V + + D+++ VP D+H
Sbjct: 65 VHAAGQVAHV--------------TVNSPIPVHRWPGILNARLPADVVIRAAAAVPPDWH 110
Query: 513 ARYKAQERTYFY 548
AR+ A R Y Y
Sbjct: 111 ARFSALWRRYRY 122
[128][TOP]
>UniRef100_B1M6N9 tRNA pseudouridine synthase A n=1 Tax=Methylobacterium
radiotolerans JCM 2831 RepID=TRUA_METRJ
Length = 253
Score = 73.2 bits (178), Expect = 1e-11
Identities = 44/124 (35%), Positives = 61/124 (49%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G+ F G Q+Q TV G +E A +F + +TC+ RTDAGVHA+ V
Sbjct: 3 RYKLVIEYDGSPFCGWQRQADDPTVQGAIEAAVTRFSGENARLTCAGRTDAGVHAIHQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ + VR A+N L+ + ++ VP F AR+ A R
Sbjct: 63 HLDLAK-----------DWRTDTVRDALNAHLR--PQPVAILSAETVPDSFDARHSAIRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[129][TOP]
>UniRef100_A4WCV2 tRNA pseudouridine synthase A n=1 Tax=Enterobacter sp. 638
RepID=TRUA_ENT38
Length = 270
Score = 73.2 bits (178), Expect = 1e-11
Identities = 46/126 (36%), Positives = 63/126 (50%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+ R L IEY G+++ G Q+Q R+V LE+A + +QP++V C+ RTDAGVH
Sbjct: 9 VHRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANQPIAVCCAGRTDAGVHGTGQ 68
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H + + K L VN L D+ V V+ VP DFHAR+ A
Sbjct: 69 VVHFETTSVRKDAAWTL-----------GVNANL---PGDIAVRWVKDVPDDFHARFSAT 114
Query: 531 ERTYFY 548
R Y Y
Sbjct: 115 ARRYRY 120
[130][TOP]
>UniRef100_Q21IY8 Pseudouridylate synthase n=1 Tax=Saccharophagus degradans 2-40
RepID=Q21IY8_SACD2
Length = 289
Score = 72.8 bits (177), Expect = 2e-11
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Frame = +3
Query: 147 EGMSQKQRIQRYLLAIEYIGTRFSGSQKQLTC-RTVVGVLEEAFCKFLSQPVSVTCSSRT 323
+G + ++R +L +EY G+ + G Q+QLT TV LE+A ++PV++ C+ RT
Sbjct: 14 DGTPVPEGMRRVVLQVEYDGSPYCGFQRQLTAPNTVQAELEKALSSVANEPVTIVCAGRT 73
Query: 324 DAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPS 503
DAGVHA S + H D L + VN L + VI + V
Sbjct: 74 DAGVHATSQIVHFD-----------TLAGRPSKAWLQGVNTHL---PFSIRVISAKEVGF 119
Query: 504 DFHARYKAQERTYFY 548
DFHAR+ A RTY Y
Sbjct: 120 DFHARFSALSRTYRY 134
[131][TOP]
>UniRef100_Q0S3E5 Pseudouridylate synthase n=1 Tax=Rhodococcus jostii RHA1
RepID=Q0S3E5_RHOSR
Length = 297
Score = 72.8 bits (177), Expect = 2e-11
Identities = 48/125 (38%), Positives = 64/125 (51%)
Frame = +3
Query: 174 QRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
+R L I Y GT FSG +Q RTV G +EE L P+ +T + RTDAGVHA V
Sbjct: 26 RRLRLDIAYDGTDFSGWARQNGLRTVCGEIEEKLGAVLRTPLQLTVAGRTDAGVHATGQV 85
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
HVD+ P + L P +PS + + + FL K D+ + + P F AR+ A
Sbjct: 86 AHVDV-------PVDAL-PDDPSRLVRRLARFLPK---DVRIKRIAFAPEHFDARFSAMR 134
Query: 534 RTYFY 548
R Y Y
Sbjct: 135 RHYEY 139
[132][TOP]
>UniRef100_Q1YHJ2 Pseudouridylate synthase n=1 Tax=Aurantimonas manganoxydans
SI85-9A1 RepID=Q1YHJ2_MOBAS
Length = 259
Score = 72.8 bits (177), Expect = 2e-11
Identities = 45/124 (36%), Positives = 64/124 (51%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L IEY GT + G Q+Q T + V+E A F + ++ + RTDAGVHA V
Sbjct: 3 RFKLTIEYDGTPYCGWQRQKTDLSAQEVIETAVEGFTGEAATLFAAGRTDAGVHASGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD++R EP VR A+N L+ D + ++ V DF AR+ A++R
Sbjct: 63 HVDLRR-----------DWEPDTVRDALNAHLR--DAPVAILSAERVADDFDARFSARKR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 FYLY 113
[133][TOP]
>UniRef100_C8P6B5 tRNA pseudouridine synthase A n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P6B5_9LACO
Length = 256
Score = 72.8 bits (177), Expect = 2e-11
Identities = 53/127 (41%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQP---VSVTCSSRTDAGVHALS 347
RY + Y G FSG Q Q RTV VL+ A K P VSV S RTDAGVHAL+
Sbjct: 3 RYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKHPDPPVSVIGSGRTDAGVHALN 62
Query: 348 NVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKA 527
V H DI P +L +RKA+N L D++V V +FHARY A
Sbjct: 63 QVAHFDI-------PYQL----SDEAMRKALNSLLPL---DILVKKAERVDENFHARYSA 108
Query: 528 QERTYFY 548
+TY Y
Sbjct: 109 HRKTYRY 115
[134][TOP]
>UniRef100_C2YLL6 Pseudouridylate synthase n=1 Tax=Bacillus cereus AH1271
RepID=C2YLL6_BACCE
Length = 250
Score = 72.8 bits (177), Expect = 2e-11
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQ-LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGV 335
++ ++ Y L I+Y G RF G Q+ T+ G +E + + + + + SRTDAGV
Sbjct: 2 KENKMNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGV 61
Query: 336 HALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHA 515
HAL+ V + + E L H+ V+K +N +L ND+ V DV VP FHA
Sbjct: 62 HALNQVANF--------QSDEKLVEHK---VKKYLNQYLP---NDISVTDVEEVPDRFHA 107
Query: 516 RYKAQERTYFY 548
RY ++ +TY Y
Sbjct: 108 RYNSKAKTYLY 118
[135][TOP]
>UniRef100_C2EVC9 Pseudouridylate synthase n=1 Tax=Lactobacillus vaginalis ATCC 49540
RepID=C2EVC9_9LACO
Length = 256
Score = 72.8 bits (177), Expect = 2e-11
Identities = 52/127 (40%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQP---VSVTCSSRTDAGVHALS 347
RY + Y G+ FSG Q Q RTV VL+ A K P + V S RTDAGVHAL+
Sbjct: 3 RYKITFAYDGSNFSGFQIQPHKRTVEQVLKNAVNKIAKHPTPEIPVIGSGRTDAGVHALN 62
Query: 348 NVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKA 527
V H DI P L +RKA+N L D+++ V SDFHARY A
Sbjct: 63 QVAHFDI-------PYHL----SNESMRKALNSILPL---DILIKKAELVDSDFHARYSA 108
Query: 528 QERTYFY 548
+TY Y
Sbjct: 109 HNKTYRY 115
[136][TOP]
>UniRef100_C2B7C3 Pseudouridylate synthase n=1 Tax=Citrobacter youngae ATCC 29220
RepID=C2B7C3_9ENTR
Length = 270
Score = 72.8 bits (177), Expect = 2e-11
Identities = 47/130 (36%), Positives = 64/130 (49%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
Q+ + L IEY G+++ G Q+Q R+V LE+A + ++PVSV C+ RTDAGVH
Sbjct: 5 QQPSPHKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVSVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H + + K L VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHFETHAVRKDAAWTL-----------GVNANL---PGDIAVRWVKAVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[137][TOP]
>UniRef100_A3RVR7 Pseudouridylate synthase n=2 Tax=Ralstonia solanacearum
RepID=A3RVR7_RALSO
Length = 274
Score = 72.8 bits (177), Expect = 2e-11
Identities = 47/124 (37%), Positives = 60/124 (48%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L I+Y G FSG Q Q TV VLE A +F + T + RTDAGVHAL +
Sbjct: 3 RIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQIV 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D + EP + N FL + + V + VP DFHAR+ A R
Sbjct: 63 HLDTDLV-----------REPFSWVRGTNAFL---PSTVAVRWAQAVPEDFHARFSAHRR 108
Query: 537 TYFY 548
TY+Y
Sbjct: 109 TYYY 112
[138][TOP]
>UniRef100_Q2RNZ9 tRNA pseudouridine synthase A n=1 Tax=Rhodospirillum rubrum ATCC
11170 RepID=TRUA_RHORT
Length = 278
Score = 72.8 bits (177), Expect = 2e-11
Identities = 47/124 (37%), Positives = 63/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY G + G Q+Q T+ LEEA + V S RTD+GVHAL V
Sbjct: 3 RYRLTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATRVHGSGRTDSGVHALGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ R + + V KA+N L+ + VID V DFHAR+ A+ER
Sbjct: 63 HLDLPR-----------AYGAATVMKALNAHLR--PQPIAVIDAAEVAEDFHARFSAEER 109
Query: 537 TYFY 548
+Y Y
Sbjct: 110 SYRY 113
[139][TOP]
>UniRef100_Q2SJD3 Pseudouridylate synthase n=1 Tax=Hahella chejuensis KCTC 2396
RepID=Q2SJD3_HAHCH
Length = 283
Score = 72.4 bits (176), Expect = 2e-11
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLT-CRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
R L + Y G+R+ G Q Q + +V +E A K PVSV C+ RTDAGVHA++ V
Sbjct: 23 RVALVLGYDGSRYHGWQAQNSGVPSVQAEVESALAKVADHPVSVVCAGRTDAGVHAVNQV 82
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H + + + P VNHFL D+ V VP DFHARY A
Sbjct: 83 VHFETKAL-----------RSPYSWAMGVNHFLPA---DVSVSWAGAVPEDFHARYTATS 128
Query: 534 RTYFY 548
R+Y Y
Sbjct: 129 RSYRY 133
[140][TOP]
>UniRef100_C4ZI89 Pseudouridylate synthase n=1 Tax=Eubacterium rectale ATCC 33656
RepID=C4ZI89_EUBR3
Length = 252
Score = 72.4 bits (176), Expect = 2e-11
Identities = 46/131 (35%), Positives = 68/131 (51%)
Frame = +3
Query: 156 SQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGV 335
++++R R + + Y GT + G Q Q T+ VL E + L + + VT +SRTDAGV
Sbjct: 3 AKQERYMRVKMIVAYDGTNYCGWQIQPNGITIEQVLNEHLSRLLKEDIKVTGASRTDAGV 62
Query: 336 HALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHA 515
H+L NVC D + R P E ++ A+N QK D++V+D V DFH
Sbjct: 63 HSLGNVCMFD---TNTRMPAEKIS--------YALN---QKLPEDIVVVDSCEVSDDFHP 108
Query: 516 RYKAQERTYFY 548
R+ +TY Y
Sbjct: 109 RFSKSRKTYEY 119
[141][TOP]
>UniRef100_C0QUR7 Pseudouridylate synthase n=1 Tax=Persephonella marina EX-H1
RepID=C0QUR7_PERMH
Length = 244
Score = 72.4 bits (176), Expect = 2e-11
Identities = 48/123 (39%), Positives = 62/123 (50%)
Frame = +3
Query: 180 YLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCH 359
Y L I YIG + G QKQ RTV GVLEE + + + S RTDAGVHAL V
Sbjct: 7 YKLVIMYIGKNYHGWQKQPKHRTVQGVLEEKLKVLFKEDIVLIGSGRTDAGVHALGQV-- 64
Query: 360 VDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERT 539
+ + IS R+P E+ ++ R D+ V V VP FHAR+ A+ +T
Sbjct: 65 ANFKTISYRKPEEIYRYLNATLPR------------DISVKSVEEVPLSFHARFSAKGKT 112
Query: 540 YFY 548
Y Y
Sbjct: 113 YIY 115
[142][TOP]
>UniRef100_C8NWW5 tRNA pseudouridine synthase A n=1 Tax=Corynebacterium genitalium
ATCC 33030 RepID=C8NWW5_9CORY
Length = 303
Score = 72.4 bits (176), Expect = 2e-11
Identities = 53/141 (37%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Frame = +3
Query: 150 GMSQKQR-IQRYLLAIEYIGTRFSGSQKQLTC-------RTVVGVLEEAFCKFLSQPVSV 305
G+ ++Q I R L I Y GTRF G +Q RTV G LE+A L PV +
Sbjct: 9 GLDEEQAGIVRLRLDIAYDGTRFHGWARQAAAPGEETPVRTVQGELEDALSLILRHPVEL 68
Query: 306 TCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVID 485
T + RTDAGVHA V H D + K + EP + + + L+ DL V
Sbjct: 69 TVAGRTDAGVHATGQVAHAD---VPKHALDQRSIVGEPEKLTRRLARLLEP---DLRVTA 122
Query: 486 VRCVPSDFHARYKAQERTYFY 548
V P DF AR+ A RTY Y
Sbjct: 123 VTEAPRDFDARFSALTRTYRY 143
[143][TOP]
>UniRef100_C7MEW9 Pseudouridylate synthase I n=1 Tax=Brachybacterium faecium DSM 4810
RepID=C7MEW9_BRAFD
Length = 346
Score = 72.4 bits (176), Expect = 2e-11
Identities = 54/142 (38%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Frame = +3
Query: 126 PIDGDEEEGMSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSV 305
P DG E R R L + Y GT F G Q RTV G LE+A + P V
Sbjct: 22 PADGPGAES----PRTTRLRLDLSYDGTDFHGWAAQPGQRTVQGELEKALRRIARIPARV 77
Query: 306 TCSSRTDAGVHALSNVCHVDI-QRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVI 482
T + RTDAGVHA VCH+D+ + PG +P P+ V+ D++V
Sbjct: 78 TVAGRTDAGVHARGQVCHLDLPDDVLATLPGR--SPRTPA--EALVSRLAGVLPEDVVVH 133
Query: 483 DVRCVPSDFHARYKAQERTYFY 548
R VP DF AR+ AQ R Y Y
Sbjct: 134 VAREVPDDFDARFGAQWRRYRY 155
[144][TOP]
>UniRef100_C2F179 Pseudouridylate synthase n=2 Tax=Lactobacillus reuteri
RepID=C2F179_LACRE
Length = 256
Score = 72.4 bits (176), Expect = 2e-11
Identities = 51/127 (40%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQP---VSVTCSSRTDAGVHALS 347
RY + Y GT FSG Q Q RTV L+ A K P + V S RTDAGVHAL+
Sbjct: 3 RYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPNPAIPVIGSGRTDAGVHALN 62
Query: 348 NVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKA 527
V H DI P L +RKA+N L D+++ V +DFHARY A
Sbjct: 63 QVAHFDI-------PYHL----SNESMRKALNSILPL---DILIKKAELVDNDFHARYSA 108
Query: 528 QERTYFY 548
+TY Y
Sbjct: 109 HRKTYRY 115
[145][TOP]
>UniRef100_B2RIV6 tRNA pseudouridine synthase A n=1 Tax=Porphyromonas gingivalis ATCC
33277 RepID=TRUA_PORG3
Length = 252
Score = 72.4 bits (176), Expect = 2e-11
Identities = 45/124 (36%), Positives = 66/124 (53%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ + + Y GTR+SG Q Q +V +EEA + QPV V + RTDAGVHA V
Sbjct: 3 RFFIYLAYNGTRYSGWQTQPNAPSVQQTVEEAISTIVRQPVGVVGAGRTDAGVHAHEMVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ P + TP E + + + +N L + D+++ + V +D HAR+ A R
Sbjct: 63 HADL-------PCD--TPAEAATLTERLNKLLPR---DIVIYRMAPVKADAHARFDAISR 110
Query: 537 TYFY 548
TY Y
Sbjct: 111 TYHY 114
[146][TOP]
>UniRef100_Q0ASJ7 tRNA pseudouridine synthase A n=1 Tax=Maricaulis maris MCS10
RepID=TRUA_MARMM
Length = 249
Score = 72.4 bits (176), Expect = 2e-11
Identities = 49/124 (39%), Positives = 66/124 (53%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY G FSG Q+Q +V LE A K PV V + RTD+GVHAL+ V
Sbjct: 3 RYRITIEYDGRPFSGWQRQDNAPSVQESLERAAEKLDGAPVLVYGAGRTDSGVHALAQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ + +L T VR A+N+ L+ + + VI+ V DFHAR+ A R
Sbjct: 63 HLDLAK-------DLST----DKVRDAINYHLK--PDPVAVIEAARVSDDFHARFSATRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYLY 113
[147][TOP]
>UniRef100_A5VLH4 tRNA pseudouridine synthase A n=5 Tax=Lactobacillus reuteri
RepID=TRUA_LACRD
Length = 256
Score = 72.4 bits (176), Expect = 2e-11
Identities = 51/127 (40%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQP---VSVTCSSRTDAGVHALS 347
RY + Y GT FSG Q Q RTV L+ A K P + V S RTDAGVHAL+
Sbjct: 3 RYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHALN 62
Query: 348 NVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKA 527
V H DI P L +RKA+N L D+++ V +DFHARY A
Sbjct: 63 QVAHFDI-------PYHL----SNESMRKALNSILPL---DILIKKAELVDNDFHARYSA 108
Query: 528 QERTYFY 548
+TY Y
Sbjct: 109 HRKTYRY 115
[148][TOP]
>UniRef100_UPI0001826F40 hypothetical protein ENTCAN_03268 n=1 Tax=Enterobacter cancerogenus
ATCC 35316 RepID=UPI0001826F40
Length = 270
Score = 72.0 bits (175), Expect = 3e-11
Identities = 45/126 (35%), Positives = 63/126 (50%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+ R L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 9 VHRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVLCAGRTDAGVHGTGQ 68
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H + + K L VN L D+ V V+ VP DFHAR+ A
Sbjct: 69 VVHFETTAVRKDAAWTL-----------GVNANL---PGDIAVRWVKNVPDDFHARFSAT 114
Query: 531 ERTYFY 548
R Y Y
Sbjct: 115 ARRYRY 120
[149][TOP]
>UniRef100_C6YVL8 Pseudouridylate synthase n=1 Tax=Francisella philomiragia subsp.
philomiragia ATCC 25015 RepID=C6YVL8_9GAMM
Length = 258
Score = 72.0 bits (175), Expect = 3e-11
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
++ YLL IEY G + G Q+Q ++ LE+A K +Q + VTC+ RTD GVHA S
Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60
Query: 351 VC--HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
V H D R S + N L + D+ ++D++ V +DF++R+
Sbjct: 61 VVNFHSDADR-------------NLSSWMRGTNALLPQ---DIKILDIKVVDNDFNSRFT 104
Query: 525 AQERTYFY 548
A+ RTY Y
Sbjct: 105 AKNRTYNY 112
[150][TOP]
>UniRef100_Q5LNR0 tRNA pseudouridine synthase A n=1 Tax=Ruegeria pomeroyi
RepID=TRUA_SILPO
Length = 262
Score = 72.0 bits (175), Expect = 3e-11
Identities = 41/124 (33%), Positives = 63/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY+GT F+G Q+Q +V G +E A + P ++ + RTDAGVH L V
Sbjct: 3 RYALKVEYLGTPFAGWQRQKDLPSVQGAIETALARLEPGPHTIAAAGRTDAGVHGLGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ R +P + +A+N+ L+ + + V D+HAR+ A ER
Sbjct: 63 HCDLTR-----------DWDPFRLSEALNYHLK--PQPVAITAAARVAEDWHARFSATER 109
Query: 537 TYFY 548
Y +
Sbjct: 110 QYLF 113
[151][TOP]
>UniRef100_B1KKN8 tRNA pseudouridine synthase A n=1 Tax=Shewanella woodyi ATCC 51908
RepID=TRUA_SHEWM
Length = 261
Score = 72.0 bits (175), Expect = 3e-11
Identities = 46/124 (37%), Positives = 60/124 (48%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L IEY G+++ G Q+Q+ +V LE A K ++P+SV C+ RTD GVHA V
Sbjct: 2 RVALGIEYDGSKYFGWQRQVEVDSVQAQLERALSKVANEPISVHCAGRTDTGVHATGQVV 61
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D I K L VN L +D+ V + V DFHAR+ A R
Sbjct: 62 HFDTDAIRKESAWTL-----------GVNVSL---PDDIAVRWAKVVDEDFHARFSATAR 107
Query: 537 TYFY 548
Y Y
Sbjct: 108 RYRY 111
[152][TOP]
>UniRef100_Q8ZNB9 tRNA pseudouridine synthase A n=5 Tax=Salmonella enterica subsp.
enterica RepID=TRUA_SALTY
Length = 270
Score = 72.0 bits (175), Expect = 3e-11
Identities = 45/130 (34%), Positives = 64/130 (49%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
Q + + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 QSSAVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H + + K L VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHFETTALRKDAAWTL-----------GVNANL---PGDIAVRWVKTVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[153][TOP]
>UniRef100_Q8XXX8 tRNA pseudouridine synthase A n=1 Tax=Ralstonia solanacearum
RepID=TRUA_RALSO
Length = 274
Score = 72.0 bits (175), Expect = 3e-11
Identities = 46/124 (37%), Positives = 60/124 (48%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L I+Y G FSG Q Q TV VLE A +F + T + RTDAGVHAL V
Sbjct: 3 RIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALREFAGVALPTTVAGRTDAGVHALGQVV 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D + + +P + N FL + V + +P DFHAR+ A R
Sbjct: 63 HLDTELV-----------RDPFSWVRGTNAFLPP---TVAVRWAQAMPEDFHARFSAHRR 108
Query: 537 TYFY 548
TY+Y
Sbjct: 109 TYYY 112
[154][TOP]
>UniRef100_B6JJP6 tRNA pseudouridine synthase A n=1 Tax=Oligotropha carboxidovorans
OM5 RepID=TRUA_OLICO
Length = 245
Score = 72.0 bits (175), Expect = 3e-11
Identities = 46/124 (37%), Positives = 61/124 (49%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY GT F G Q Q +V G LE+A V V + RTDAGVHAL V
Sbjct: 3 RYKLLIEYDGTPFCGWQYQDNGPSVQGALEDAVAALAGTHVRVHGAGRTDAGVHALGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+++ + VR A+N L+ H + V+ VP F +R+ A +R
Sbjct: 63 HIDLEK-----------SYRTDQVRDALNAHLRPH--PIGVLSAEIVPETFESRFSAVKR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYIY 113
[155][TOP]
>UniRef100_A6WYK9 tRNA pseudouridine synthase A n=1 Tax=Ochrobactrum anthropi ATCC
49188 RepID=TRUA_OCHA4
Length = 251
Score = 72.0 bits (175), Expect = 3e-11
Identities = 43/124 (34%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY GT + G Q+Q V +E AF KF + ++++ + RTDAGVHA + V
Sbjct: 3 RYKLTVEYDGTPYVGWQRQENGHAVQNAIELAFKKFCGEDLTLSAAGRTDAGVHATAQVV 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD+ + VR AVN L D + +++V F AR+ A+ R
Sbjct: 63 HVDLTK-----------DWGAGKVRDAVNAHLVMADERVSILNVERTTDTFDARFSARAR 111
Query: 537 TYFY 548
Y Y
Sbjct: 112 HYLY 115
[156][TOP]
>UniRef100_A8A2I7 tRNA pseudouridine synthase A n=7 Tax=Escherichia coli
RepID=TRUA_ECOHS
Length = 270
Score = 72.0 bits (175), Expect = 3e-11
Identities = 45/130 (34%), Positives = 65/130 (50%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
Q+ + + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 QQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H + + K L VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHFETTALRKDAAWTL-----------GVNANL---PGDIAVRWVKAVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[157][TOP]
>UniRef100_Q6GQ53 tRNA pseudouridine synthase-like 1 n=1 Tax=Xenopus laevis
RepID=PUSL1_XENLA
Length = 298
Score = 72.0 bits (175), Expect = 3e-11
Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGV---LEEAFCKFLSQPVSVT---CSSRTDAGVH 338
RYL+ +Y GT++SG + ++V+GV LE A K +PV SSRTD+GVH
Sbjct: 7 RYLVFFQYYGTKYSGVMETPITQSVLGVQNYLEVAAQKL--RPVGTIKFFISSRTDSGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
A+ N+ HVDI+R +K +P P ++ +A+NH LQ + ++ V +FHAR
Sbjct: 65 AICNLAHVDIER-AKGKP-----PFTEEILVQAMNHHLQ--PEPIRLLKAIRVCDNFHAR 116
Query: 519 YKAQERTYFY 548
+ A RTY Y
Sbjct: 117 HNALSRTYVY 126
[158][TOP]
>UniRef100_Q4E7X8 Pseudouridylate synthase (Fragment) n=1 Tax=Wolbachia endosymbiont
of Drosophila simulans RepID=Q4E7X8_9RICK
Length = 188
Score = 71.6 bits (174), Expect = 3e-11
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + +EY G+ FSG QKQ + ++ +E A F + +++ C RTDAGVHAL V
Sbjct: 2 RYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQV 61
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D+++ E +R A+N+ L+ ++V++ V FHAR+ A++
Sbjct: 62 AHFDMEK-----------ECELYRIRNAINYHLK--SIPIVVLNAEVVDDAFHARFSAKK 108
Query: 534 RTYFY 548
R Y Y
Sbjct: 109 RYYEY 113
[159][TOP]
>UniRef100_C7CF80 Pseudouridylate synthase n=1 Tax=Methylobacterium extorquens DM4
RepID=C7CF80_METED
Length = 250
Score = 71.6 bits (174), Expect = 3e-11
Identities = 43/124 (34%), Positives = 60/124 (48%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F G Q+Q TV +E A +F + +TC+ RTDAGVHA+ V
Sbjct: 3 RYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ + VR A+N L+ + ++ VP +F AR+ A R
Sbjct: 63 HLDLAK-----------DWRTDTVRDALNAHLR--PQPVAILSAEVVPQEFDARHSAIRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[160][TOP]
>UniRef100_C7BT83 Pseudouridylate synthase n=1 Tax=Photorhabdus asymbiotica
RepID=C7BT83_9ENTR
Length = 264
Score = 71.6 bits (174), Expect = 3e-11
Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +3
Query: 186 LAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVD 365
L IEY G+++ G Q+Q +++ G LE+A K +P+SV C+ RTDAGVHA V H +
Sbjct: 5 LGIEYDGSQYYGWQRQQEVKSIQGCLEQALSKVADEPISVFCAGRTDAGVHATGQVVHFE 64
Query: 366 IQRISKRRPGEL-LTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTY 542
K + + H P+ D+ V V+ V DFHAR+ A R Y
Sbjct: 65 TSAQRKDAAWTMGVNAHLPA---------------DIAVRWVKTVDEDFHARFSATARRY 109
Query: 543 FY 548
Y
Sbjct: 110 RY 111
[161][TOP]
>UniRef100_B1EJF6 Pseudouridylate synthase n=1 Tax=Escherichia albertii TW07627
RepID=B1EJF6_9ESCH
Length = 270
Score = 71.6 bits (174), Expect = 3e-11
Identities = 45/130 (34%), Positives = 64/130 (49%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
Q + + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 QPSPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H + + K L VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHFETTALRKDAAWTL-----------GVNANL---PGDIAVRWVKAVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[162][TOP]
>UniRef100_A9HB17 Pseudouridylate synthase n=1 Tax=Roseobacter litoralis Och 149
RepID=A9HB17_9RHOB
Length = 256
Score = 71.6 bits (174), Expect = 3e-11
Identities = 41/126 (32%), Positives = 66/126 (52%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+ RY L +EY G F G Q+Q TV G +E+A K P ++ + RTDAGVHA++
Sbjct: 1 MHRYALKVEYHGAPFVGWQRQKEHSTVQGAIEQALGKIAPAPHTIAAAGRTDAGVHAIAQ 60
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H D+ R +P + +A+N+ L+ + + V +D+HAR+ A+
Sbjct: 61 VAHCDLVR-----------DWDPFRLSEALNYHLK--PAPIAITACTVVDADWHARFSAR 107
Query: 531 ERTYFY 548
+R Y +
Sbjct: 108 QRQYLF 113
[163][TOP]
>UniRef100_C0R4F9 tRNA pseudouridine synthase A n=1 Tax=Wolbachia sp. wRi
RepID=TRUA_WOLWR
Length = 245
Score = 71.6 bits (174), Expect = 3e-11
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + +EY G+ FSG QKQ + ++ +E A F + +++ C RTDAGVHAL V
Sbjct: 2 RYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQV 61
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D+++ E +R A+N+ L+ ++V++ V FHAR+ A++
Sbjct: 62 AHFDMEK-----------ECELYRIRNAINYHLK--SIPIVVLNAEVVDDAFHARFSAKK 108
Query: 534 RTYFY 548
R Y Y
Sbjct: 109 RYYEY 113
[164][TOP]
>UniRef100_Q83G11 tRNA pseudouridine synthase A n=1 Tax=Tropheryma whipplei str.
Twist RepID=TRUA_TROWT
Length = 267
Score = 71.6 bits (174), Expect = 3e-11
Identities = 48/124 (38%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L + Y G F G Q RTV G++ +A S+P + ++RTDAGVHAL VC
Sbjct: 5 RYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVVAARTDAGVHALQQVC 64
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD+ IS P LL H L K + DL ++ P +FHAR+ A R
Sbjct: 65 HVDL--ISSPDPVWLL--HR--------LRSLLKSETDLHILSAVKAPVNFHARFSAIGR 112
Query: 537 TYFY 548
Y Y
Sbjct: 113 RYVY 116
[165][TOP]
>UniRef100_Q820Z2 tRNA pseudouridine synthase A n=1 Tax=Tropheryma whipplei TW08/27
RepID=TRUA_TROW8
Length = 267
Score = 71.6 bits (174), Expect = 3e-11
Identities = 48/124 (38%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L + Y G F G Q RTV G++ +A S+P + ++RTDAGVHAL VC
Sbjct: 5 RYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVIAARTDAGVHALQQVC 64
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD+ IS P LL H L K + DL ++ P +FHAR+ A R
Sbjct: 65 HVDL--ISSPDPVWLL--HR--------LRSLLKSETDLHILSAVKAPVNFHARFSAIGR 112
Query: 537 TYFY 548
Y Y
Sbjct: 113 RYVY 116
[166][TOP]
>UniRef100_B5EZQ2 tRNA pseudouridine synthase A n=22 Tax=Salmonella enterica
RepID=TRUA_SALA4
Length = 270
Score = 71.6 bits (174), Expect = 3e-11
Identities = 45/130 (34%), Positives = 64/130 (49%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
Q + + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 QSSPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H + + K L VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHFETTALRKDAAWTL-----------GVNANL---PGDIAVRWVKTVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[167][TOP]
>UniRef100_P60352 tRNA pseudouridine synthase A n=1 Tax=Rhodopseudomonas palustris
RepID=TRUA_RHOPA
Length = 248
Score = 71.6 bits (174), Expect = 3e-11
Identities = 49/127 (38%), Positives = 60/127 (47%)
Frame = +3
Query: 168 RIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALS 347
R+ RY L IEY G F G Q Q +V G LE A + V V + RTDAGVHAL
Sbjct: 3 RMPRYKLTIEYDGAPFCGWQLQPALPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALG 62
Query: 348 NVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKA 527
V HVDI + P +R A+N L+ N + V+ VP F AR+ A
Sbjct: 63 QVAHVDIPK-----------PFRADKLRDALNAHLR--PNPVAVLAAEIVPDTFEARFSA 109
Query: 528 QERTYFY 548
R Y Y
Sbjct: 110 VRRHYRY 116
[168][TOP]
>UniRef100_Q2J2C4 tRNA pseudouridine synthase A n=1 Tax=Rhodopseudomonas palustris
HaA2 RepID=TRUA_RHOP2
Length = 245
Score = 71.6 bits (174), Expect = 3e-11
Identities = 48/124 (38%), Positives = 59/124 (47%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F G Q Q T +V G LE A + V V + RTDAGVHAL V
Sbjct: 3 RYKLTIEYDGAPFCGWQLQPTLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVDI + P +R A+N ++ H + V+ V DF AR+ A R
Sbjct: 63 HVDIPK-----------PFRADKLRDALNAHVRPH--PIAVLSAELVADDFEARFSAIRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[169][TOP]
>UniRef100_A1VRR5 tRNA pseudouridine synthase A n=1 Tax=Polaromonas naphthalenivorans
CJ2 RepID=TRUA_POLNA
Length = 264
Score = 71.6 bits (174), Expect = 3e-11
Identities = 49/126 (38%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L I Y G+ + G Q QL+ +TV LE A +F QP+ V C+ RTDAGVHAL V
Sbjct: 2 RIALGISYSGSAYEGWQSQLSGKTVQDKLELALSRFAVQPIRVMCAGRTDAGVHALMQVV 61
Query: 357 HVDIQRISKRRPGELLTP--HEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
H D TP E S + N FL +D+ V + VP +FH+R A
Sbjct: 62 HFD-------------TPLQRETSSWVRGTNAFL---PSDIAVQWAQPVPDEFHSRASAI 105
Query: 531 ERTYFY 548
R Y Y
Sbjct: 106 ARRYAY 111
[170][TOP]
>UniRef100_B7KVW3 tRNA pseudouridine synthase A n=1 Tax=Methylobacterium
chloromethanicum CM4 RepID=TRUA_METC4
Length = 250
Score = 71.6 bits (174), Expect = 3e-11
Identities = 43/124 (34%), Positives = 60/124 (48%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F G Q+Q TV +E A +F + +TC+ RTDAGVHA+ V
Sbjct: 3 RYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ + VR A+N L+ + ++ VP +F AR+ A R
Sbjct: 63 HLDLAK-----------DWRTDTVRDALNAHLR--PQPVSILSAEVVPQEFDARHSAIRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[171][TOP]
>UniRef100_A7MH65 tRNA pseudouridine synthase A n=1 Tax=Cronobacter sakazakii ATCC
BAA-894 RepID=TRUA_ENTS8
Length = 270
Score = 71.6 bits (174), Expect = 3e-11
Identities = 46/131 (35%), Positives = 68/131 (51%)
Frame = +3
Query: 156 SQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGV 335
S ++ + + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGV
Sbjct: 4 SLEKPVVKIALGIEYDGSKYYGWQRQQEVRSVQEKLEKALSQVANEPINVFCAGRTDAGV 63
Query: 336 HALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHA 515
HA V H + I K L VN L D+ V V+ VP++FHA
Sbjct: 64 HATGQVVHFETTAIRKDAAWTL-----------GVNANL---PGDIAVRWVKDVPAEFHA 109
Query: 516 RYKAQERTYFY 548
R+ A R Y Y
Sbjct: 110 RFSATARRYRY 120
[172][TOP]
>UniRef100_C4ZVL1 tRNA pseudouridine synthase A n=4 Tax=Escherichia coli
RepID=TRUA_ECOBW
Length = 270
Score = 71.6 bits (174), Expect = 3e-11
Identities = 45/130 (34%), Positives = 65/130 (50%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
Q+ + + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 QQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H + + K L VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHFETTALRKDAAWTL-----------GVNANL---PGDIAVRWVKTVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[173][TOP]
>UniRef100_C6BW69 tRNA pseudouridine synthase A n=1 Tax=Desulfovibrio salexigens DSM
2638 RepID=TRUA_DESAD
Length = 271
Score = 71.6 bits (174), Expect = 3e-11
Identities = 46/126 (36%), Positives = 62/126 (49%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+QR L I Y GT F G Q Q RTV G LE+A + V V S RTD+GVHAL
Sbjct: 1 MQRIKLIIAYDGTNFCGWQLQPKLRTVQGDLEKAITRITGTTVRVHGSGRTDSGVHALGQ 60
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H D+ + +A+N L +D+ ++D + V +FH+RY A
Sbjct: 61 VAHFDVDSCFASVKWQ-----------RALNSLL---PDDVTILDAQLVSPEFHSRYSAI 106
Query: 531 ERTYFY 548
+TY Y
Sbjct: 107 RKTYTY 112
[174][TOP]
>UniRef100_C9XWU9 tRNA pseudouridine synthase A n=1 Tax=Cronobacter turicensis
RepID=C9XWU9_9ENTR
Length = 262
Score = 71.2 bits (173), Expect = 5e-11
Identities = 45/126 (35%), Positives = 66/126 (52%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+++ L IEY G+++ G Q+Q R+V LE+A + ++PV+V C+ RTDAGVHA
Sbjct: 1 MRKIALGIEYDGSKYYGWQRQQEVRSVQEKLEKALSQVANEPVNVFCAGRTDAGVHATGQ 60
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H + + K L VN L D+ V V+ VP++FHAR+ A
Sbjct: 61 VVHFETTAVRKDAAWTL-----------GVNANL---PGDIAVRWVKDVPAEFHARFSAT 106
Query: 531 ERTYFY 548
R Y Y
Sbjct: 107 ARRYRY 112
[175][TOP]
>UniRef100_C8UDR9 Pseudouridylate synthase I n=1 Tax=Escherichia coli O111:H- str.
11128 RepID=C8UDR9_ECO11
Length = 270
Score = 71.2 bits (173), Expect = 5e-11
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +3
Query: 153 MSQKQRIQRYLLA--IEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTD 326
MS +Q++ Y +A IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 327 AGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSD 506
AGVH V H E + + VN L D+ V V+ VP D
Sbjct: 61 AGVHGTGQVVHF-----------ETTAQRKDAAWTLGVNANL---PGDIAVRWVKAVPDD 106
Query: 507 FHARYKAQERTYFY 548
FHAR+ A R Y Y
Sbjct: 107 FHARFSATARRYRY 120
[176][TOP]
>UniRef100_C8TUW3 Pseudouridylate synthase I n=1 Tax=Escherichia coli O26:H11 str.
11368 RepID=C8TUW3_ECOLX
Length = 270
Score = 71.2 bits (173), Expect = 5e-11
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +3
Query: 153 MSQKQRIQRYLLA--IEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTD 326
MS +Q++ Y +A IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 327 AGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSD 506
AGVH V H E + + VN L D+ V V+ VP D
Sbjct: 61 AGVHGTGQVVHF-----------ETTAQRKDAAWTLGVNANL---PGDIAVRWVKAVPDD 106
Query: 507 FHARYKAQERTYFY 548
FHAR+ A R Y Y
Sbjct: 107 FHARFSATARRYRY 120
[177][TOP]
>UniRef100_C7LQD1 tRNA pseudouridine synthase A n=1 Tax=Desulfomicrobium baculatum
DSM 4028 RepID=C7LQD1_DESBD
Length = 246
Score = 71.2 bits (173), Expect = 5e-11
Identities = 40/124 (32%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L + Y+GTR+ G Q Q T+ G +E+ + + V V S RTD+GVHAL+ V
Sbjct: 3 RIRLTVAYVGTRYQGWQIQGRGETIQGAIEDKLARICGELVRVHGSGRTDSGVHALAQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ + P R+A+N L +D+ +++ R DFHAR+ + +
Sbjct: 63 HFDVPESKRHIPW-----------RQALNAML---PDDISILEAREAQDDFHARFSVRSK 108
Query: 537 TYFY 548
Y Y
Sbjct: 109 RYAY 112
[178][TOP]
>UniRef100_C5T803 Pseudouridylate synthase n=1 Tax=Acidovorax delafieldii 2AN
RepID=C5T803_ACIDE
Length = 289
Score = 71.2 bits (173), Expect = 5e-11
Identities = 51/124 (41%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L + Y G R++G Q Q + TV LE A +F +Q VS C+ RTDAGVH L V
Sbjct: 19 RVALGVSYNGQRYNGWQSQPSGNTVQDHLEAALGRFTTQQVSTLCAGRTDAGVHGLMQVV 78
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D + RP + S VR N FL + D+ V R VPS FHAR A R
Sbjct: 79 HFDTTLV---RP-------DASWVR-GTNAFLPQ---DIAVQWARAVPSGFHARASAVAR 124
Query: 537 TYFY 548
Y Y
Sbjct: 125 RYAY 128
[179][TOP]
>UniRef100_C2W3Q0 Pseudouridylate synthase n=1 Tax=Bacillus cereus Rock3-44
RepID=C2W3Q0_BACCE
Length = 268
Score = 71.2 bits (173), Expect = 5e-11
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Frame = +3
Query: 156 SQKQRIQRYLLAIEYIGTRFSGSQKQ-LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
S++ + Y I+Y G R+ G Q+ T+ G +E + + Q + + SRTDAG
Sbjct: 19 SKENIMNNYKFTIQYDGARYKGWQRLGNNDNTIQGKIESVLSEMVGQEIEIIGCSRTDAG 78
Query: 333 VHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFH 512
VHAL+ V + I+ E L+ EP V +K +N +L ND+ + DV VP FH
Sbjct: 79 VHALNQVANFKIE--------EKLS--EPKV-KKYLNQYLP---NDISITDVEQVPERFH 124
Query: 513 ARYKAQERTYFY 548
ARY ++ +TY Y
Sbjct: 125 ARYNSKAKTYLY 136
[180][TOP]
>UniRef100_B3WAI6 tRNA pseudouridine synthase A n=3 Tax=Lactobacillus casei group
RepID=TRUA_LACCB
Length = 247
Score = 71.2 bits (173), Expect = 5e-11
Identities = 49/124 (39%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Frame = +3
Query: 180 YLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRTDAGVHALSNVC 356
Y + + Y GT F+G Q Q RTV GVL++A K QPV V S RTD+GVHAL V
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALGQVI 63
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
D PG + P E + KA+N + D+ ++ V +DFHARY A+ +
Sbjct: 64 SFDY-------PGNI--PAESML--KAMNSLMPL---DIEILKAEIVDADFHARYSAKGK 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 RYLY 113
[181][TOP]
>UniRef100_B7A9H2 Pseudouridylate synthase n=1 Tax=Thermus aquaticus Y51MC23
RepID=B7A9H2_THEAQ
Length = 259
Score = 71.2 bits (173), Expect = 5e-11
Identities = 52/127 (40%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLT-CRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALS 347
++R LL EY GT F+G Q+Q RTV G LE+A + P +V + RTDAGVHAL+
Sbjct: 1 MRRILLLTEYDGTHFAGLQRQRQGLRTVQGELEKALPHIGALPKAVA-AGRTDAGVHALA 59
Query: 348 NVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKA 527
H+D+Q +P P V +A+N L + DL V+ R V DFHAR A
Sbjct: 60 MPFHIDLQ-----------SPIPPEKVPEALNRLLPE---DLKVVAAREVAPDFHARKDA 105
Query: 528 QERTYFY 548
R Y Y
Sbjct: 106 LWRAYRY 112
[182][TOP]
>UniRef100_B3WRE7 Pseudouridylate synthase n=2 Tax=Escherichia coli
RepID=B3WRE7_ECOLX
Length = 270
Score = 71.2 bits (173), Expect = 5e-11
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +3
Query: 153 MSQKQRIQRYLLA--IEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTD 326
MS +Q++ Y +A IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 327 AGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSD 506
AGVH V H E + + VN L D+ V V+ VP D
Sbjct: 61 AGVHGTGQVVHF-----------ETTAQRKDAAWTLGVNANL---PGDIAVRWVKAVPDD 106
Query: 507 FHARYKAQERTYFY 548
FHAR+ A R Y Y
Sbjct: 107 FHARFSATARRYRY 120
[183][TOP]
>UniRef100_B3IHW0 Pseudouridylate synthase n=1 Tax=Escherichia coli E110019
RepID=B3IHW0_ECOLX
Length = 270
Score = 71.2 bits (173), Expect = 5e-11
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +3
Query: 153 MSQKQRIQRYLLA--IEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTD 326
MS +Q++ Y +A IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 327 AGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSD 506
AGVH V H E + + VN L D+ V V+ VP D
Sbjct: 61 AGVHGTGQVVHF-----------ETTAQRKDAAWTLGVNANL---PGDIAVRWVKAVPDD 106
Query: 507 FHARYKAQERTYFY 548
FHAR+ A R Y Y
Sbjct: 107 FHARFSATARRYRY 120
[184][TOP]
>UniRef100_A3XD98 Pseudouridylate synthase n=1 Tax=Roseobacter sp. MED193
RepID=A3XD98_9RHOB
Length = 258
Score = 71.2 bits (173), Expect = 5e-11
Identities = 41/124 (33%), Positives = 63/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L +EY G F+G Q+Q +V G +EEA K P ++ + RTD GVH L V
Sbjct: 3 RFALKVEYHGKPFAGWQRQKDQPSVQGAIEEALAKLEPGPHTIAAAGRTDTGVHGLGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+Q+ P P + +A+N L+ + ++D V ++HAR+ A ER
Sbjct: 63 HCDLQK-----------PWSPFRLSEALNFHLK--PAPVAIVDCAVVDPEWHARFSAIER 109
Query: 537 TYFY 548
Y +
Sbjct: 110 QYLF 113
[185][TOP]
>UniRef100_A3V313 Pseudouridylate synthase n=1 Tax=Loktanella vestfoldensis SKA53
RepID=A3V313_9RHOB
Length = 257
Score = 71.2 bits (173), Expect = 5e-11
Identities = 42/124 (33%), Positives = 65/124 (52%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY G F+G Q+Q +V G +E A K P ++ + RTDAGVHA V
Sbjct: 3 RYALLVEYHGAPFAGWQRQTGLPSVQGAIEAALAKLSPGPHTIAAAGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ PG+ +P + +A+N+ L+ + + ++ V D+HAR+ A ER
Sbjct: 63 HCDL-------PGD----WDPFRLSEALNYHLK--PDPVAILGCALVADDWHARFDAVER 109
Query: 537 TYFY 548
Y +
Sbjct: 110 QYLF 113
[186][TOP]
>UniRef100_Q3YZP3 tRNA pseudouridine synthase A n=1 Tax=Shigella sonnei Ss046
RepID=TRUA_SHISS
Length = 270
Score = 71.2 bits (173), Expect = 5e-11
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +3
Query: 153 MSQKQRIQRYLLA--IEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTD 326
MS +Q++ Y +A IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 327 AGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSD 506
AGVH V H E + + VN L D+ V V+ VP D
Sbjct: 61 AGVHGTGQVVHF-----------ETTAQRKDAAWTLGVNANL---PGDIAVRWVKAVPDD 106
Query: 507 FHARYKAQERTYFY 548
FHAR+ A R Y Y
Sbjct: 107 FHARFSATARRYRY 120
[187][TOP]
>UniRef100_Q7MB17 tRNA pseudouridine synthase A n=1 Tax=Photorhabdus luminescens
subsp. laumondii RepID=TRUA_PHOLL
Length = 264
Score = 71.2 bits (173), Expect = 5e-11
Identities = 46/121 (38%), Positives = 59/121 (48%)
Frame = +3
Query: 186 LAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVD 365
L IEY G+R+ G Q+Q ++V G LEEA K +P+SV C+ RTDAGVHA V H
Sbjct: 5 LGIEYDGSRYYGWQRQQEVKSVQGCLEEALSKVADEPISVFCAGRTDAGVHATGQVVHF- 63
Query: 366 IQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYF 545
E + + VN L D+ V V+ V FHAR+ A R Y
Sbjct: 64 ----------ETSVQRKDAAWTMGVNVHLPP---DIAVRWVKTVDEGFHARFSATARRYR 110
Query: 546 Y 548
Y
Sbjct: 111 Y 111
[188][TOP]
>UniRef100_Q035B5 tRNA pseudouridine synthase A n=1 Tax=Lactobacillus casei ATCC 334
RepID=TRUA_LACC3
Length = 247
Score = 71.2 bits (173), Expect = 5e-11
Identities = 49/124 (39%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Frame = +3
Query: 180 YLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFL-SQPVSVTCSSRTDAGVHALSNVC 356
Y + + Y GT F+G Q Q RTV GVL++A K QPV V S RTD+GVHAL V
Sbjct: 4 YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALGQVI 63
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
D PG + P E + KA+N + D+ ++ V +DFHARY A+ +
Sbjct: 64 SFDY-------PGNI--PAESML--KAMNSLMPL---DIEILKAEIVDADFHARYSAKGK 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 RYLY 113
[189][TOP]
>UniRef100_B7LLF2 tRNA pseudouridine synthase A n=1 Tax=Escherichia fergusonii ATCC
35469 RepID=TRUA_ESCF3
Length = 270
Score = 71.2 bits (173), Expect = 5e-11
Identities = 45/130 (34%), Positives = 64/130 (49%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
Q+ + + L IEY G+R+ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 QQPPVYKIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H E + + VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHF-----------ETTAQRKDAAWTLGVNANL---PGDIAVRWVKAVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[190][TOP]
>UniRef100_B7M6J9 tRNA pseudouridine synthase A n=9 Tax=Enterobacteriaceae
RepID=TRUA_ECO8A
Length = 270
Score = 71.2 bits (173), Expect = 5e-11
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +3
Query: 153 MSQKQRIQRYLLA--IEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTD 326
MS +Q++ Y +A IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTD
Sbjct: 1 MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60
Query: 327 AGVHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSD 506
AGVH V H E + + VN L D+ V V+ VP D
Sbjct: 61 AGVHGTGQVVHF-----------ETTAQRKDAAWTLGVNANL---PGDIAVRWVKAVPDD 106
Query: 507 FHARYKAQERTYFY 548
FHAR+ A R Y Y
Sbjct: 107 FHARFSATARRYRY 120
[191][TOP]
>UniRef100_A7ZPD3 tRNA pseudouridine synthase A n=9 Tax=Escherichia RepID=TRUA_ECO24
Length = 270
Score = 71.2 bits (173), Expect = 5e-11
Identities = 45/130 (34%), Positives = 64/130 (49%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
Q+ + + L IEY G+R+ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 QQPPVYKIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H E + + VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHF-----------ETTAQRKDAAWTLGVNANL---PGDIAVRWVKAVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[192][TOP]
>UniRef100_A8ADR1 tRNA pseudouridine synthase A n=1 Tax=Citrobacter koseri ATCC
BAA-895 RepID=TRUA_CITK8
Length = 270
Score = 71.2 bits (173), Expect = 5e-11
Identities = 45/126 (35%), Positives = 63/126 (50%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+ + L IEY G+++ G Q+Q R+V LE+A + ++PV+V C+ RTDAGVH
Sbjct: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVNVFCAGRTDAGVHGTGQ 68
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H + + K L VN L D+ V V+ VP DFHAR+ A
Sbjct: 69 VVHFETTALRKDAAWTL-----------GVNANL---PGDIAVRWVKAVPEDFHARFSAT 114
Query: 531 ERTYFY 548
R Y Y
Sbjct: 115 ARRYRY 120
[193][TOP]
>UniRef100_Q2GKK4 tRNA pseudouridine synthase A n=1 Tax=Anaplasma phagocytophilum HZ
RepID=TRUA_ANAPZ
Length = 246
Score = 71.2 bits (173), Expect = 5e-11
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQ--LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
RY +EY GT F G Q+Q + ++V +E + +F Q V V + RTDAGVHA
Sbjct: 2 RYKAVVEYEGTSFIGWQRQHGVVGKSVQESIERSIKEFCQQSVIVYAAGRTDAGVHATGQ 61
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H D++ E V++ A+NH+L+ + + ++ + V +FHAR+ A+
Sbjct: 62 VVHFDLK-----------VSREDYVIKNALNHYLR--NEKVSILQLERVDEEFHARFSAK 108
Query: 531 ERTYFY 548
+R Y Y
Sbjct: 109 KRHYTY 114
[194][TOP]
>UniRef100_B9KIN8 tRNA pseudouridine synthase A n=1 Tax=Anaplasma marginale str.
Florida RepID=TRUA_ANAMF
Length = 247
Score = 71.2 bits (173), Expect = 5e-11
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQ--LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
RY +EY GT F G Q+Q + R+V +E+A + Q V+V + RTDAGVHAL
Sbjct: 2 RYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQHVTVFAAGRTDAGVHALGQ 61
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H D+ T + V++ A+NH+L+ + + ++ + FHAR+ A+
Sbjct: 62 VVHFDLN-----------TSLQDYVIKNALNHYLR--SDMVSILSLEEAAEGFHARFSAK 108
Query: 531 ERTYFY 548
+R Y Y
Sbjct: 109 KRHYMY 114
[195][TOP]
>UniRef100_Q1K346 Pseudouridylate synthase n=1 Tax=Desulfuromonas acetoxidans DSM 684
RepID=Q1K346_DESAC
Length = 251
Score = 70.9 bits (172), Expect = 6e-11
Identities = 48/124 (38%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L +EY GT + G Q Q +TV +E A + + V V S RTDAGVHA+
Sbjct: 3 RLCLTVEYDGTSYGGWQVQPNAQTVQEQIESALAQVIGASVRVYSSGRTDAGVHAIDMKA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ E L P S R+ VN FL + D++V V V DFHAR+ AQ +
Sbjct: 63 HFDV---------ETLLP--LSAYREGVNRFLPQ---DIVVRQVCRVADDFHARFDAQGK 108
Query: 537 TYFY 548
Y Y
Sbjct: 109 WYRY 112
[196][TOP]
>UniRef100_C8T7B9 tRNA pseudouridine synthase A n=1 Tax=Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884 RepID=C8T7B9_KLEPR
Length = 270
Score = 70.9 bits (172), Expect = 6e-11
Identities = 46/130 (35%), Positives = 67/130 (51%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
++Q I + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 EQQPICKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H + + K L VN L D+ V V+ VP+DFHAR
Sbjct: 65 GTGQVVHFETRAQRKDAAWTL-----------GVNANL---PGDIAVRWVKRVPADFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[197][TOP]
>UniRef100_C4XBJ9 Pseudouridylate synthase n=1 Tax=Klebsiella pneumoniae NTUH-K2044
RepID=C4XBJ9_KLEPN
Length = 270
Score = 70.9 bits (172), Expect = 6e-11
Identities = 46/130 (35%), Positives = 67/130 (51%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
++Q I + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 EQQPICKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H + + K L VN L D+ V V+ VP+DFHAR
Sbjct: 65 GTGQVVHFETRAQRKDAAWTL-----------GVNANL---PGDIAVRWVKHVPADFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[198][TOP]
>UniRef100_B1ZGA6 tRNA pseudouridine synthase A n=1 Tax=Methylobacterium populi BJ001
RepID=TRUA_METPB
Length = 252
Score = 70.9 bits (172), Expect = 6e-11
Identities = 44/124 (35%), Positives = 59/124 (47%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F G Q+Q TV +E A +F + +TC+ RTDAGVHA+ V
Sbjct: 3 RYKLVIEYDGGPFCGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ R VR A+N L+ + ++ V DF AR+ A R
Sbjct: 63 HLDLAR-----------DWRTDTVRDALNAHLR--PQPIAIVSAEVVTHDFDARHSAIRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[199][TOP]
>UniRef100_B3E0A0 tRNA pseudouridine synthase A n=1 Tax=Methylacidiphilum infernorum
V4 RepID=TRUA_METI4
Length = 255
Score = 70.9 bits (172), Expect = 6e-11
Identities = 47/123 (38%), Positives = 64/123 (52%)
Frame = +3
Query: 180 YLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCH 359
Y L + Y G+ F G Q+Q TV LEEA K +P+ V + RTDAGVHA V
Sbjct: 8 YKLTLSYCGSGFHGWQRQGELPTVQRALEEAVAKIWEEPIPVEGAGRTDAGVHAKGQVA- 66
Query: 360 VDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERT 539
S P +L EP V+++A+N+ L + + V D R VP +F AR+ A +T
Sbjct: 67 ------SFAAPRKL----EPEVLKRALNYHL---PDTVRVWDARIVPREFSARFDAVSKT 113
Query: 540 YFY 548
Y Y
Sbjct: 114 YQY 116
[200][TOP]
>UniRef100_A9W377 tRNA pseudouridine synthase A n=1 Tax=Methylobacterium extorquens
PA1 RepID=TRUA_METEP
Length = 250
Score = 70.9 bits (172), Expect = 6e-11
Identities = 43/124 (34%), Positives = 60/124 (48%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F G Q+Q TV +E A +F + +TC+ RTDAGVHA+ V
Sbjct: 3 RYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ + VR A+N L+ + ++ VP +F AR+ A R
Sbjct: 63 HLDLAK-----------DWRTDTVRDALNARLR--PQPVAILSAEVVPQEFDARHSAIRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[201][TOP]
>UniRef100_A6TC04 tRNA pseudouridine synthase A n=1 Tax=Klebsiella pneumoniae subsp.
pneumoniae MGH 78578 RepID=TRUA_KLEP7
Length = 270
Score = 70.9 bits (172), Expect = 6e-11
Identities = 46/130 (35%), Positives = 67/130 (51%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
++Q I + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 EQQPICKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H + + K L VN L D+ V V+ VP+DFHAR
Sbjct: 65 GTGQVVHFETRAQRKDAAWTL-----------GVNANL---PGDIAVRWVKHVPADFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[202][TOP]
>UniRef100_B5XNR9 tRNA pseudouridine synthase A n=1 Tax=Klebsiella pneumoniae 342
RepID=TRUA_KLEP3
Length = 270
Score = 70.9 bits (172), Expect = 6e-11
Identities = 46/130 (35%), Positives = 67/130 (51%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
++Q I + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 EQQPIFKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H + + K L VN L D+ V V+ VP+DFHAR
Sbjct: 65 GTGQVVHFETRAQRKDAAWTL-----------GVNANL---PGDIAVRWVKHVPADFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[203][TOP]
>UniRef100_A8IQL3 tRNA pseudouridine synthase A n=1 Tax=Azorhizobium caulinodans ORS
571 RepID=TRUA_AZOC5
Length = 258
Score = 70.9 bits (172), Expect = 6e-11
Identities = 48/124 (38%), Positives = 59/124 (47%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY GT F+G Q Q TV GVL A F + V + RTDAGVHA V
Sbjct: 3 RYKLTIEYDGTPFAGWQIQAELPTVQGVLAAAVKGFSGEEAHVAGAGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+ + R P VR A+ L+ H + V+ V V DF AR+ A +R
Sbjct: 63 HIHLAR-----------DWRPDQVRDAMTAHLRPH--PVAVVAVERVADDFDARFSAVKR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYLY 113
[204][TOP]
>UniRef100_Q5PAN6 tRNA pseudouridine synthase A n=1 Tax=Anaplasma marginale str. St.
Maries RepID=TRUA_ANAMM
Length = 247
Score = 70.9 bits (172), Expect = 6e-11
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQ--LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
RY +EY GT F G Q+Q + R+V +E+A + Q V+V + RTDAGVHAL
Sbjct: 2 RYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQCVTVFAAGRTDAGVHALGQ 61
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H D+ T + V++ A+NH+L+ + + ++ + FHAR+ A+
Sbjct: 62 VVHFDLN-----------TSLQDYVIKNALNHYLR--SDMVSILSLEEAAEGFHARFSAK 108
Query: 531 ERTYFY 548
+R Y Y
Sbjct: 109 KRHYMY 114
[205][TOP]
>UniRef100_Q2JL72 Pseudouridylate synthase n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13)
RepID=Q2JL72_SYNJB
Length = 285
Score = 70.5 bits (171), Expect = 8e-11
Identities = 47/126 (37%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Frame = +3
Query: 174 QRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
+R L I+Y+G+RF G Q+Q RTV GVLEEA PV++ + RTD GVHA V
Sbjct: 4 RRIALRIQYLGSRFYGWQRQAARRTVQGVLEEAIASRAGHPVTLYGAGRTDTGVHAAGQV 63
Query: 354 CHVDIQRISKRRPGELLTPHEPSVV-RKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
H D T P+V + +N L + D++V+ VP +HAR+ A+
Sbjct: 64 AHFD------------TTSGIPAVEWSRVLNDCLPE---DVVVLASAQVPDSWHARFSAR 108
Query: 531 ERTYFY 548
R Y Y
Sbjct: 109 WRRYRY 114
[206][TOP]
>UniRef100_B0C428 Pseudouridylate synthase n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0C428_ACAM1
Length = 292
Score = 70.5 bits (171), Expect = 8e-11
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 174 QRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
QR L I+Y+GT F G Q+Q R+V +E+ + + PV++ + RTD+GVHA + V
Sbjct: 9 QRVALVIQYLGTHFHGWQRQPQHRSVQADIEDTLAEIVQHPVTLHGAGRTDSGVHAAAQV 68
Query: 354 CHVDIQR-ISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
H D++ I R +L P D+++ VPSD+HAR+ A
Sbjct: 69 AHFDVESPIPAHRWASVLNARLP---------------QDILIRGSALVPSDWHARFSAT 113
Query: 531 ERTYFY 548
R Y Y
Sbjct: 114 WRRYRY 119
[207][TOP]
>UniRef100_C8PY59 tRNA pseudouridine synthase A n=1 Tax=Enhydrobacter aerosaccus SK60
RepID=C8PY59_9GAMM
Length = 268
Score = 70.5 bits (171), Expect = 8e-11
Identities = 42/126 (33%), Positives = 68/126 (53%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+ Y ++IE+IGTR+ G Q+Q ++ +E A K ++P+ V + RTDAGVHA +
Sbjct: 3 VNTYAISIEFIGTRYRGWQRQQEVDSIQQHVEAALSKIANEPIEVIAAGRTDAGVHASNM 62
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
+ H Q + R+P L +A N L +D+ V ++ +P++FHAR+ A
Sbjct: 63 IAH--FQTSATRQPYNWL---------RAANSLL---PDDIAVRWIQVMPAEFHARFSAI 108
Query: 531 ERTYFY 548
R Y Y
Sbjct: 109 ARRYRY 114
[208][TOP]
>UniRef100_C8NBU9 tRNA pseudouridine synthase A n=1 Tax=Cardiobacterium hominis ATCC
15826 RepID=C8NBU9_9GAMM
Length = 265
Score = 70.5 bits (171), Expect = 8e-11
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQ-LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + +EY GT ++G Q+Q T+ LE A + + PV TC+ RTDAGVHA + V
Sbjct: 4 RYAVGLEYDGTHYAGWQRQPFFAATIQEQLECALSQVAAHPVETTCAGRTDAGVHATAQV 63
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D N +L D+ + +R VP++FHARY A+E
Sbjct: 64 IHFDTG-----------AARSDFAWLAGANRYLPA---DIRLQWIRAVPAEFHARYSARE 109
Query: 534 RTYFY 548
R Y Y
Sbjct: 110 RHYRY 114
[209][TOP]
>UniRef100_C6QBF0 Pseudouridylate synthase n=1 Tax=Hyphomicrobium denitrificans ATCC
51888 RepID=C6QBF0_9RHIZ
Length = 246
Score = 70.5 bits (171), Expect = 8e-11
Identities = 46/124 (37%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEY GT F G Q+Q ++ G LE A KF + V + RTDAGVHAL V
Sbjct: 3 RYRITIEYDGTPFIGWQRQAEGVSIQGALETAIRKFSGEAPGVRGAGRTDAGVHALGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+++ EP +R A+N L+ N + V+ V F AR+ A +R
Sbjct: 63 HFDLEK-----------TWEPGRIRDAMNFHLR--PNPIGVVAAAQVDDAFDARFSAVKR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 YYEY 113
[210][TOP]
>UniRef100_C0U7Z3 Pseudouridylate synthase n=1 Tax=Geodermatophilus obscurus DSM
43160 RepID=C0U7Z3_9ACTO
Length = 260
Score = 70.5 bits (171), Expect = 8e-11
Identities = 47/121 (38%), Positives = 58/121 (47%)
Frame = +3
Query: 186 LAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVD 365
+ I Y GT G +Q RTV G LEEA + L QPVS+T + RTDAGVHA V H D
Sbjct: 1 MGIAYDGTALHGWARQPAQRTVQGDLEEALSRVLRQPVSLTVAGRTDAGVHATGQVAHGD 60
Query: 366 IQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYF 545
+ P + P +VR+ D+ V V P DF AR+ A R Y
Sbjct: 61 V-------PRAVWAEQRPRLVRRLRGVL----PPDIAVHTVEEAPRDFDARFGALRRHYV 109
Query: 546 Y 548
Y
Sbjct: 110 Y 110
[211][TOP]
>UniRef100_C0GXQ7 Pseudouridylate synthase n=1 Tax=Halothiobacillus neapolitanus c2
RepID=C0GXQ7_THINE
Length = 271
Score = 70.5 bits (171), Expect = 8e-11
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L +EY G+R+ G Q+Q +V LE A + PV V C+ RTDAGVHA V
Sbjct: 3 RIALTLEYDGSRYHGWQRQSEVDSVQARLETALSRVADSPVDVVCAGRTDAGVHASHQVV 62
Query: 357 HVDIQRISKRRPGEL-LTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H D + I R L +T PS D+ ++ + V +FHAR+ A
Sbjct: 63 HFDTEAIRPERAWLLGVTQSLPS---------------DISILSAQFVDPEFHARFSATA 107
Query: 534 RTYFY 548
R+Y Y
Sbjct: 108 RSYRY 112
[212][TOP]
>UniRef100_A9EAT3 Pseudouridylate synthase n=1 Tax=Oceanibulbus indolifex HEL-45
RepID=A9EAT3_9RHOB
Length = 257
Score = 70.5 bits (171), Expect = 8e-11
Identities = 42/124 (33%), Positives = 60/124 (48%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F+G Q+Q+ TV G +E A + ++ + RTD GVH L V
Sbjct: 3 RYALKIEYHGAPFNGWQRQVDLPTVQGFIEAALARLEPGAHTIAAAGRTDTGVHGLGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D+ R P + +A+N+ L+ + + D P DFHAR+ A ER
Sbjct: 63 HCDMAR-----------DWSPFRLGEALNYHLK--PQPIAITDCVLAPEDFHARFSALER 109
Query: 537 TYFY 548
Y +
Sbjct: 110 RYHF 113
[213][TOP]
>UniRef100_B3CMC1 tRNA pseudouridine synthase A n=2 Tax=Wolbachia endosymbiont of
Culex quinquefasciatus RepID=TRUA_WOLPP
Length = 245
Score = 70.5 bits (171), Expect = 8e-11
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQL-TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
RY + IEY G+ FSG QKQ + ++ +E A F + VS+ C RTD GVHAL V
Sbjct: 2 RYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGERVSLHCGGRTDTGVHALGQV 61
Query: 354 CHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQE 533
H +++R E +R +N+ L+ ++V+ V FHAR+ A++
Sbjct: 62 AHFNMER-----------QFELYRIRNGINYHLKA--IPIVVLSAEAVDDAFHARFSAKK 108
Query: 534 RTYFY 548
R Y Y
Sbjct: 109 RYYEY 113
[214][TOP]
>UniRef100_Q0C4U8 tRNA pseudouridine synthase A n=1 Tax=Hyphomonas neptunium ATCC
15444 RepID=TRUA_HYPNA
Length = 247
Score = 70.5 bits (171), Expect = 8e-11
Identities = 47/124 (37%), Positives = 63/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G + G + +TV G LE A + PV VT + RTDAGVHA V
Sbjct: 3 RYRLLIEYNGGPYQGWMRLPGLQTVQGALEAAAAQLDGGPVEVTGAGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ R+ + P+ V A+N+ L+ H + V+ V DFHAR+ A R
Sbjct: 63 HMDL-RVDR-----------PNKVADAMNYHLRPH--PIAVLKADRVEEDFHARFSAIAR 108
Query: 537 TYFY 548
Y Y
Sbjct: 109 HYRY 112
[215][TOP]
>UniRef100_A5ESQ5 tRNA pseudouridine synthase A n=1 Tax=Bradyrhizobium sp. BTAi1
RepID=TRUA_BRASB
Length = 245
Score = 70.5 bits (171), Expect = 8e-11
Identities = 48/124 (38%), Positives = 59/124 (47%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY GT F G Q Q T +V G LE A P V S RTDAGVHA V
Sbjct: 3 RYKLTIEYDGTPFCGWQLQETLPSVQGALEAAVQATCGVPTRVHGSGRTDAGVHATGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H DI + P +R A+N L+ N + V++ V F AR+ A++R
Sbjct: 63 HCDIAK-----------DFRPDKLRDALNAHLR--PNPVAVLEAEIVSDTFEARFSARKR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[216][TOP]
>UniRef100_Q1ICS4 Pseudouridylate synthase n=1 Tax=Pseudomonas entomophila L48
RepID=Q1ICS4_PSEE4
Length = 284
Score = 70.1 bits (170), Expect = 1e-10
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Frame = +3
Query: 138 DEEEGMSQKQRIQRYLLAIEYIGTRFSGSQKQLT-CRTVVGVLEEAFCKFLSQPVSVTCS 314
D S + R L +EY G+R+ G Q+Q + +V LE+A ++P++V C+
Sbjct: 5 DNAAAESAAEGYTRIALGVEYKGSRYRGWQRQASGVPSVQQALEQALSTVANEPITVVCA 64
Query: 315 SRTDAGVHALSNVCHVDIQRISKRRPGELLT----PHEPSVVRKAVNHFLQKHDNDLMVI 482
RTDAGVH + H D + + R L T PH+ SVV A
Sbjct: 65 GRTDAGVHGCGQIVHFDTRAVRDERAWTLGTNFNLPHDISVVWSAP-------------- 110
Query: 483 DVRCVPSDFHARYKAQERTYFY 548
+P+ FHAR+KA R Y Y
Sbjct: 111 ----MPAHFHARFKATARRYRY 128
[217][TOP]
>UniRef100_B4RDU3 Pseudouridylate synthase n=1 Tax=Phenylobacterium zucineum HLK1
RepID=B4RDU3_PHEZH
Length = 246
Score = 70.1 bits (170), Expect = 1e-10
Identities = 45/124 (36%), Positives = 61/124 (49%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F+G Q Q T+ G +E A F + + + + RTD GVHA V
Sbjct: 4 RYRLLIEYDGRPFNGFQAQDGLPTIQGAIERAVKAFCGEDLRLQAAGRTDTGVHARGQVV 63
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVD ++K P E VR A+N L + V++ P +HAR+ A+ER
Sbjct: 64 HVD---LAKDWPAE--------TVRNALNAHLV--PQPIAVLEASVAPEGWHARFSAKER 110
Query: 537 TYFY 548
Y Y
Sbjct: 111 RYLY 114
[218][TOP]
>UniRef100_A7GKW8 Pseudouridylate synthase n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GKW8_BACCN
Length = 260
Score = 70.1 bits (170), Expect = 1e-10
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Frame = +3
Query: 156 SQKQRIQRYLLAIEYIGTRFSGSQKQ-LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
+++ ++ Y L I+Y G RF G Q+ T+ G +E + + Q + + SRTDAG
Sbjct: 11 NKENKMNNYKLTIQYDGGRFKGWQRLGNNDNTIQGKIESVLSEMIGQEIEIIGCSRTDAG 70
Query: 333 VHALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFH 512
VHAL+ V + + E L + V+K +N +L ND+ + +V VP FH
Sbjct: 71 VHALNQVANFKVD--------EKLVETK---VKKYLNQYLP---NDISITEVEQVPERFH 116
Query: 513 ARYKAQERTYFY 548
ARY ++ +TY Y
Sbjct: 117 ARYNSKTKTYLY 128
[219][TOP]
>UniRef100_C6V3Q0 Pseudouridylate synthase n=1 Tax=Neorickettsia risticii str.
Illinois RepID=C6V3Q0_NEORI
Length = 243
Score = 70.1 bits (170), Expect = 1e-10
Identities = 42/124 (33%), Positives = 64/124 (51%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY +EY+GT FSG QKQ++ +V LE L + ++V + RTDAGVHAL V
Sbjct: 2 RYKATVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQVF 61
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D + + +P + AVN+ L+ + ++++ + V F AR+ A R
Sbjct: 62 HFDARE----------STLQPFQIVNAVNYHLK--EKLIVLLKIEIVDETFDARFSAIRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYQY 113
[220][TOP]
>UniRef100_C3T1X5 Pseudouridylate synthase n=1 Tax=Escherichia coli
RepID=C3T1X5_ECOLX
Length = 270
Score = 70.1 bits (170), Expect = 1e-10
Identities = 44/130 (33%), Positives = 64/130 (49%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
Q+ + + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 QQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H E + + VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHF-----------ETTAQRKDAAWTLGVNANL---PGDIAVRWVKAVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[221][TOP]
>UniRef100_C1ZVL4 Pseudouridylate synthase n=1 Tax=Rhodothermus marinus DSM 4252
RepID=C1ZVL4_RHOMR
Length = 252
Score = 70.1 bits (170), Expect = 1e-10
Identities = 47/123 (38%), Positives = 58/123 (47%)
Frame = +3
Query: 180 YLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCH 359
Y L IEY GT FSG Q Q ++ LEEA L + V V S RTDAGVHA V H
Sbjct: 4 YRLLIEYDGTDFSGWQIQRNGPSIQAALEEALAVVLRERVRVVGSGRTDAGVHARGQVAH 63
Query: 360 VDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERT 539
R P +P ++ ++N L + + V P DFHARY A+ R
Sbjct: 64 FRTDR-----------PVDPERLQGSLNGLLPP---SIAIRSVSLAPDDFHARYDARWRR 109
Query: 540 YFY 548
Y Y
Sbjct: 110 YHY 112
[222][TOP]
>UniRef100_C0VZ39 Pseudouridylate synthase n=1 Tax=Actinomyces coleocanis DSM 15436
RepID=C0VZ39_9ACTO
Length = 302
Score = 70.1 bits (170), Expect = 1e-10
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R+ L Y GT F G KQ RTV G LEEA L +PV +T + RTDAGVHA +
Sbjct: 2 RFRLECAYRGTFFRGWAKQPGLRTVQGTLEEALALVLREPVELTVAGRTDAGVHASAQTA 61
Query: 357 HVDI---QRISKRRPGELLTPHEPSVVRKAVNHFLQKHDN------DLMVIDVRCVPSDF 509
H D+ + + + E++ H + + +N +++ D+ D++V + V F
Sbjct: 62 HFDVCADRLMQVTKQAEVV--HACEALTRRLNRLIRRADSNASGLPDVVVYSIEPVADVF 119
Query: 510 HARYKAQERTYFY 548
AR+ A R Y Y
Sbjct: 120 DARFAALRRHYVY 132
[223][TOP]
>UniRef100_C0UEX1 Pseudouridylate synthase n=1 Tax=Gordonia bronchialis DSM 43247
RepID=C0UEX1_9ACTO
Length = 291
Score = 70.1 bits (170), Expect = 1e-10
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L + Y GT F+G +Q RTV VLE+ L PV +T + RTDAGVHA VC
Sbjct: 16 RLRLDVGYEGTDFAGWARQTDQRTVGAVLEDTLATVLRIPVRLTVAGRTDAGVHATGQVC 75
Query: 357 HVDI--QRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
H DI + R G +PS++ V + +D+ V ++ V DF AR+ A
Sbjct: 76 HTDIPVSALQTRSIG-----GDPSLL---VGRLAKMLPDDVRVKEIASVSGDFDARFSAL 127
Query: 531 ERTYFY 548
R Y Y
Sbjct: 128 RRHYEY 133
[224][TOP]
>UniRef100_Q168C1 tRNA pseudouridine synthase A n=1 Tax=Roseobacter denitrificans OCh
114 RepID=TRUA_ROSDO
Length = 260
Score = 70.1 bits (170), Expect = 1e-10
Identities = 39/126 (30%), Positives = 66/126 (52%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+ RY L +EY G F G Q+Q T+ G +E A K P ++ + RTDAGVHA++
Sbjct: 1 MHRYALKVEYNGAPFVGWQRQKEHPTIQGAIERALGKIAPGPHTIAAAGRTDAGVHAIAQ 60
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H D++R +P + +A+N+ L+ + + V +++HAR+ A+
Sbjct: 61 VAHCDLER-----------DWDPFRLSEALNYHLK--PAPIAITACTAVDAEWHARFSAR 107
Query: 531 ERTYFY 548
+R Y +
Sbjct: 108 QRQYLF 113
[225][TOP]
>UniRef100_C3MF26 tRNA pseudouridine synthase A n=1 Tax=Rhizobium sp. NGR234
RepID=TRUA_RHISN
Length = 247
Score = 70.1 bits (170), Expect = 1e-10
Identities = 41/124 (33%), Positives = 62/124 (50%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L +EY G+ + G Q+Q +V G +E+A + VS+ + RTD+GVHA+ V
Sbjct: 3 RYRLTVEYDGSDYVGWQRQENGPSVQGAIEKAVLSLTGETVSIRGAGRTDSGVHAMGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D+ R K +R A+N L + ++D VP +F AR+ A R
Sbjct: 63 HLDLTREWKTH-----------TLRNALNAHLALAAERVSILDAAEVPPEFDARFSAIRR 111
Query: 537 TYFY 548
Y Y
Sbjct: 112 HYLY 115
[226][TOP]
>UniRef100_B7LBH2 tRNA pseudouridine synthase A n=20 Tax=Enterobacteriaceae
RepID=TRUA_ECO55
Length = 270
Score = 70.1 bits (170), Expect = 1e-10
Identities = 44/130 (33%), Positives = 64/130 (49%)
Frame = +3
Query: 159 QKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVH 338
Q+ + + L IEY G+++ G Q+Q R+V LE+A + ++P++V C+ RTDAGVH
Sbjct: 5 QQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
V H E + + VN L D+ V V+ VP DFHAR
Sbjct: 65 GTGQVVHF-----------ETTAQRKDAAWTLGVNANL---PGDIAVRWVKAVPDDFHAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATARRYRY 120
[227][TOP]
>UniRef100_B8I814 tRNA pseudouridine synthase A n=1 Tax=Clostridium cellulolyticum
H10 RepID=TRUA_CLOCE
Length = 245
Score = 70.1 bits (170), Expect = 1e-10
Identities = 44/126 (34%), Positives = 66/126 (52%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+++ L IEY GT + G Q Q +TV V+++A K L + V VT SRTD GVHA
Sbjct: 1 MRKIRLTIEYDGTNYHGWQIQKNAKTVQEVIQKALSKLLGEDVGVTGCSRTDVGVHAYGQ 60
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
V H + PG+ + A+N+ L +D+++ + VP +FHARY A+
Sbjct: 61 VAHF---LTDSKIPGDKFS--------YAINNLL---PDDIVIKNSEEVPEEFHARYSAK 106
Query: 531 ERTYFY 548
+ Y Y
Sbjct: 107 GKKYRY 112
[228][TOP]
>UniRef100_Q4ZVW2 Pseudouridylate synthase n=1 Tax=Pseudomonas syringae pv. syringae
B728a RepID=Q4ZVW2_PSEU2
Length = 284
Score = 69.7 bits (169), Expect = 1e-10
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLT-CRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
R L +EY G+R+ G Q+Q + TV LE+A K + PVS+ C+ RTDAGVHA V
Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77
Query: 354 CHVDIQRISKRRP----GELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARY 521
H D Q + + PH D+ V R +P+ FHAR+
Sbjct: 78 VHFDTQAERSMKAWVMGANINLPH------------------DVSVTWARVMPATFHARF 119
Query: 522 KAQERTYFY 548
KA R Y Y
Sbjct: 120 KAIARRYRY 128
[229][TOP]
>UniRef100_C0QEH4 Pseudouridylate synthase n=1 Tax=Desulfobacterium autotrophicum
HRM2 RepID=C0QEH4_DESAH
Length = 246
Score = 69.7 bits (169), Expect = 1e-10
Identities = 41/123 (33%), Positives = 66/123 (53%)
Frame = +3
Query: 180 YLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCH 359
+ L +EY GT +SG Q Q C TV +E+A + L+QP+ ++ S RTDAGVHAL V +
Sbjct: 5 FKLTLEYDGTPYSGWQVQNNCPTVQEEIEKALSRMLNQPIRISGSGRTDAGVHALGQVAN 64
Query: 360 VDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERT 539
+ T + +++++N L+ ++V + R V FH+RY A+ +
Sbjct: 65 F-----------QAATTIGAAQLKRSLNSLLK---GPIVVHECRKVDQSFHSRYSARAKE 110
Query: 540 YFY 548
Y Y
Sbjct: 111 YHY 113
[230][TOP]
>UniRef100_B1MG97 Pseudouridylate synthase n=1 Tax=Mycobacterium abscessus ATCC 19977
RepID=B1MG97_MYCA9
Length = 294
Score = 69.7 bits (169), Expect = 1e-10
Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L I Y GT F+G Q+ RTV GVL EAF + V + + RTDAGVHA V
Sbjct: 17 RLRLDIAYDGTDFAGWATQVNQRTVAGVLGEAFTTIVGDSVQLYAAGRTDAGVHATGQVA 76
Query: 357 HVDIQRI------SKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
H+D+ + RP P +VR+ ++ FL +D+ V+D+ P+ F AR
Sbjct: 77 HLDVPVACLPGLRGRYRPAG--APEFDRLVRR-LSRFL---PSDVRVLDISRAPAHFDAR 130
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 131 FSALRRHYEY 140
[231][TOP]
>UniRef100_A1UBY7 Pseudouridylate synthase n=2 Tax=Mycobacterium RepID=A1UBY7_MYCSK
Length = 299
Score = 69.7 bits (169), Expect = 1e-10
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Frame = +3
Query: 153 MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
+S + + R L + Y GT F+G Q RTV G+++EA PV+V + RTDAG
Sbjct: 16 LSSSRAVTRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPVTVRAAGRTDAG 75
Query: 333 VHALSNVCHVDI--QRISKRRPGELLTPHEPSVVR--KAVNHFLQKHDNDLMVIDVRCVP 500
VHA V HVD+ + P P EP + + + FL D+ + D+ P
Sbjct: 76 VHATGQVAHVDVPDDALPHAYP-RSARPDEPEFLPLVRRLGRFLPA---DVRIRDIIRAP 131
Query: 501 SDFHARYKAQERTYFY 548
+ F AR+ A R Y Y
Sbjct: 132 TGFDARFSALRRHYTY 147
[232][TOP]
>UniRef100_Q6SHN9 Pseudouridylate synthase n=1 Tax=uncultured marine bacterium 313
RepID=Q6SHN9_9BACT
Length = 245
Score = 69.7 bits (169), Expect = 1e-10
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
+QRY + IEY GT F G Q Q +++ VL+ A F + V VT + RTD+GVHAL+
Sbjct: 1 MQRYKIKIEYDGTPFVGWQFQKNGQSIQEVLQNAIFNFSKEKVVVTGAGRTDSGVHALAQ 60
Query: 351 VCHVDIQRISKRR---PGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARY 521
V H D+++ K++ PG +N + + + V+ + FHAR+
Sbjct: 61 VAHFDLKKKIKKKSFLPG--------------INQHI--GNKPVTVLKINKTSKKFHARF 104
Query: 522 KAQERTYFY 548
A++RTY Y
Sbjct: 105 DAKKRTYQY 113
[233][TOP]
>UniRef100_Q1V1M0 Pseudouridylate synthase n=1 Tax=Candidatus Pelagibacter ubique
HTCC1002 RepID=Q1V1M0_PELUB
Length = 246
Score = 69.7 bits (169), Expect = 1e-10
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEYIGT F G Q Q +++ ++ KFL + V + S RTDAGVHA+
Sbjct: 3 RYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQSA 62
Query: 357 HVD----IQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
H D IQ + K + K++NHF+ +D + V+ ++ FHAR+
Sbjct: 63 HFDCKKEIQNLDK--------------LLKSINHFI--NDKGISVLAIKKRSLKFHARHS 106
Query: 525 AQERTYFY 548
A++R Y Y
Sbjct: 107 AKQRIYKY 114
[234][TOP]
>UniRef100_C9Q7V8 tRNA pseudouridine synthase A n=1 Tax=Vibrio sp. RC341
RepID=C9Q7V8_9VIBR
Length = 264
Score = 69.7 bits (169), Expect = 1e-10
Identities = 48/126 (38%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L IEY GT + G Q+Q ++V LE+A K + PV V C+ RTDAGVH V
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 357 HVDIQRISKRRPGELLTPHEPSVV--RKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
H D T E +V N L K D+ V VP DFHAR+ A
Sbjct: 62 HFD-------------TTAERQMVAWTMGANANLPK---DIAVRWASSVPDDFHARFSAT 105
Query: 531 ERTYFY 548
R Y Y
Sbjct: 106 ARRYRY 111
[235][TOP]
>UniRef100_C0FE56 Pseudouridylate synthase n=1 Tax=Clostridium sp. M62/1
RepID=C0FE56_9CLOT
Length = 275
Score = 69.7 bits (169), Expect = 1e-10
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Frame = +3
Query: 186 LAIEYIGTRFSGSQKQ-LTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHV 362
+ ++Y G+R+ G QKQ T T+ G LE K +PV + S RTDAGVHAL V +
Sbjct: 7 IVLQYDGSRYDGWQKQGNTKNTIQGKLEAVLEKLAGEPVEIHGSGRTDAGVHALGQVANF 66
Query: 363 D-----IQRISKRRPGELLTPHEPSVVRKAVNHFLQKH-DNDLMVIDVRCVPSDFHARYK 524
++ + + P + + S V AV +L ++ D+ VI VP FH+R
Sbjct: 67 RLEERCLEELVDKTPEKKENGGKASSVSAAVMDYLNRYLPEDIAVISAMEVPERFHSRLN 126
Query: 525 AQERTYFY 548
A E+TY Y
Sbjct: 127 AVEKTYLY 134
[236][TOP]
>UniRef100_B5RZV8 Pseudouridylate synthase n=1 Tax=Ralstonia solanacearum
RepID=B5RZV8_RALSO
Length = 274
Score = 69.7 bits (169), Expect = 1e-10
Identities = 46/124 (37%), Positives = 59/124 (47%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L I+Y G FSG Q Q TV VLE A +F + T + RTDAGVHAL +
Sbjct: 3 RIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQII 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D + E + N FL + + V + VP DFHAR+ A R
Sbjct: 63 HLDTDLV-----------REAFSWVRGTNAFL---PSTVAVRWAQAVPEDFHARFSAHRR 108
Query: 537 TYFY 548
TY+Y
Sbjct: 109 TYYY 112
[237][TOP]
>UniRef100_B1C2Y7 Pseudouridylate synthase n=1 Tax=Clostridium spiroforme DSM 1552
RepID=B1C2Y7_9FIRM
Length = 243
Score = 69.7 bits (169), Expect = 1e-10
Identities = 41/119 (34%), Positives = 60/119 (50%)
Frame = +3
Query: 192 IEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVCHVDIQ 371
+ Y G++F G Q Q RTV G +++A K + V++ S RTDA VH V H D
Sbjct: 8 VSYDGSKFYGFQIQNKLRTVQGEIQKALKKICEEEVTIHASGRTDAKVHGNKQVFHFDTL 67
Query: 372 RISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYFY 548
R + ++A+NHFL ND+ ++D V DFH+RY A ++ Y Y
Sbjct: 68 RQMPEKQW-----------KRAINHFL---PNDIYILDSLFVSEDFHSRYSATKKEYRY 112
[238][TOP]
>UniRef100_B2U6Z1 tRNA pseudouridine synthase A n=1 Tax=Ralstonia pickettii 12J
RepID=TRUA_RALPJ
Length = 274
Score = 69.7 bits (169), Expect = 1e-10
Identities = 46/124 (37%), Positives = 58/124 (46%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
R L I+Y G FSG Q Q TV LE A +F + T + RTDAGVHAL V
Sbjct: 3 RIALGIQYDGAAFSGWQSQPHGNTVQDALESALRQFAGVALPTTVAGRTDAGVHALGQVV 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H+D + EP + N FL + V + +P DFHAR+ A R
Sbjct: 63 HLDTDLV-----------REPFSWVRGTNAFLPP---TVAVRWAQEMPEDFHARFSAHRR 108
Query: 537 TYFY 548
TY+Y
Sbjct: 109 TYYY 112
[239][TOP]
>UniRef100_Q4FNF9 tRNA pseudouridine synthase A n=1 Tax=Candidatus Pelagibacter
ubique RepID=TRUA_PELUB
Length = 246
Score = 69.7 bits (169), Expect = 1e-10
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY + IEYIGT F G Q Q +++ ++ KFL + V + S RTDAGVHA+
Sbjct: 3 RYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQSA 62
Query: 357 HVD----IQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYK 524
H D IQ + K + K++NHF+ +D + V+ ++ FHAR+
Sbjct: 63 HFDCKKEIQNLDK--------------LLKSINHFI--NDKGISVLAIKKRSLKFHARHS 106
Query: 525 AQERTYFY 548
A++R Y Y
Sbjct: 107 AKQRIYKY 114
[240][TOP]
>UniRef100_Q3SN27 tRNA pseudouridine synthase A n=1 Tax=Nitrobacter winogradskyi
Nb-255 RepID=TRUA_NITWN
Length = 255
Score = 69.7 bits (169), Expect = 1e-10
Identities = 47/124 (37%), Positives = 58/124 (46%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F G Q Q +V G LE A V V + RTDAGVHAL+ V
Sbjct: 3 RYKLTIEYDGGPFCGWQYQTNGPSVQGALEAAVKAICGDDVRVHGAGRTDAGVHALAQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H DI R P +R +N L+ H + V++ VP F AR+ A+ R
Sbjct: 63 HCDIAR-----------HFMPDRLRDGLNAHLRPH--PIGVLEAEIVPDSFEARFSARRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYIY 113
[241][TOP]
>UniRef100_Q820P8 tRNA pseudouridine synthase A n=1 Tax=Nitrosomonas europaea
RepID=TRUA_NITEU
Length = 272
Score = 69.7 bits (169), Expect = 1e-10
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
+ +LA+EY G + G QKQ C +V LE A + + V + RTDAGVHAL V
Sbjct: 13 KIVLALEYDGRGYCGWQKQPGCLSVQSRLESALSGVAGRQIQVVAAGRTDAGVHALCQVV 72
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHD----NDLMVIDVRCVPSDFHARYK 524
H++ + VR+ +N +++ + D+ +++ V DFHAR+
Sbjct: 73 HLE------------------TCVRRPLNAWIRGTNALLPGDISILEASEVSDDFHARFS 114
Query: 525 AQERTYFY 548
A ERTY Y
Sbjct: 115 ATERTYLY 122
[242][TOP]
>UniRef100_Q2GF33 tRNA pseudouridine synthase A n=1 Tax=Neorickettsia sennetsu str.
Miyayama RepID=TRUA_NEOSM
Length = 243
Score = 69.7 bits (169), Expect = 1e-10
Identities = 42/124 (33%), Positives = 64/124 (51%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY +EY+GT FSG QKQ++ +V LE L + ++V + RTDAGVHAL V
Sbjct: 2 RYKAIVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQVF 61
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
H D + + +P + AVN+ L+ + ++++ + V F AR+ A R
Sbjct: 62 HFDARE----------STLQPFQIVNAVNYHLK--EKLIVLLKIEIVDETFDARFSAIRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYQY 113
[243][TOP]
>UniRef100_A4XKB7 tRNA pseudouridine synthase A n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=TRUA_CALS8
Length = 244
Score = 69.7 bits (169), Expect = 1e-10
Identities = 44/126 (34%), Positives = 65/126 (51%)
Frame = +3
Query: 171 IQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSN 350
++ LL IEY GT + G QKQ +TV GV+E+A K + V++ S RTD GVHAL
Sbjct: 1 MRNILLTIEYDGTNYFGWQKQPNKKTVQGVIEDAIKKITGEDVNLVGSGRTDRGVHALG- 59
Query: 351 VCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQ 530
Q+ + + ++ T P + + ND+ + D V DF ARY A+
Sbjct: 60 ------QKANFKTESKIPTEKFPLALNSVL-------PNDISIKDAAEVSLDFSARYSAK 106
Query: 531 ERTYFY 548
++TY Y
Sbjct: 107 QKTYKY 112
[244][TOP]
>UniRef100_UPI0001976FF7 tRNA pseudouridine synthase A n=1 Tax=Bifidobacterium bifidum NCIMB
41171 RepID=UPI0001976FF7
Length = 298
Score = 69.3 bits (168), Expect = 2e-10
Identities = 49/128 (38%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Frame = +3
Query: 192 IEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFL-------SQPVSVTCSSRTDAGVHALSN 350
+ Y G F G KQ T RTV G +E ++P+ +T + RTD GVHA
Sbjct: 5 LAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTGVHASHQ 64
Query: 351 VCHVDI-QRISKRRPGELLTPHEPSVVRKAVNHFLQKH-DNDLMVIDVRCVPSDFHARYK 524
VCH+DI + R G + P P+V A+ H LQ+ D+ + DV PS F AR+
Sbjct: 65 VCHLDIGEETLSRCVGHMSVP--PTV---ALKHRLQRMLPADITIHDVTVAPSGFDARFS 119
Query: 525 AQERTYFY 548
A ERTY Y
Sbjct: 120 ALERTYVY 127
[245][TOP]
>UniRef100_Q48L26 Pseudouridylate synthase n=1 Tax=Pseudomonas syringae pv.
phaseolicola 1448A RepID=Q48L26_PSE14
Length = 274
Score = 69.3 bits (168), Expect = 2e-10
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLT-CRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
R L +EY G+R+ G Q+Q + TV LE+A K + PVS+ C+ RTDAGVHA V
Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67
Query: 354 CHVDIQRISKRRP----GELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARY 521
H D Q + + PH D+ V R +P+ FHAR+
Sbjct: 68 VHFDTQAERTMKAWVMGANINLPH------------------DVSVTWARVMPATFHARF 109
Query: 522 KAQERTYFY 548
KA R Y Y
Sbjct: 110 KAIARRYRY 118
[246][TOP]
>UniRef100_Q3KF17 Pseudouridylate synthase n=1 Tax=Pseudomonas fluorescens Pf0-1
RepID=Q3KF17_PSEPF
Length = 274
Score = 69.3 bits (168), Expect = 2e-10
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLT-CRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNV 353
R L +EY G+R+SG Q+Q T TV LE+A K P+S+ C+ RTDAGVHA V
Sbjct: 8 RVALGVEYKGSRYSGWQRQSTGVLTVQETLEKALSKVADSPISLQCAGRTDAGVHACGQV 67
Query: 354 CHVDIQRISKRRP----GELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARY 521
H D Q + + PH D+ V + +P+ FHAR+
Sbjct: 68 VHFDTQVDRSLKAWVMGANINLPH------------------DISVSWAKIMPAHFHARF 109
Query: 522 KAQERTYFY 548
KA R Y Y
Sbjct: 110 KAIARRYRY 118
[247][TOP]
>UniRef100_B3QCH3 Pseudouridylate synthase n=1 Tax=Rhodopseudomonas palustris TIE-1
RepID=B3QCH3_RHOPT
Length = 245
Score = 69.3 bits (168), Expect = 2e-10
Identities = 48/124 (38%), Positives = 58/124 (46%)
Frame = +3
Query: 177 RYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALSNVC 356
RY L IEY G F G Q Q +V G LE A + V V + RTDAGVHAL V
Sbjct: 3 RYKLTIEYDGAPFCGWQLQPALPSVQGALEVAALATCGEAVRVHGAGRTDAGVHALGQVA 62
Query: 357 HVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARYKAQER 536
HVDI + P +R A+N L+ N + V+ VP F AR+ A R
Sbjct: 63 HVDIPK-----------PFRADKLRDALNAHLR--PNPVAVLAAEIVPDTFEARFSAVRR 109
Query: 537 TYFY 548
Y Y
Sbjct: 110 HYRY 113
[248][TOP]
>UniRef100_A8M4Z8 Pseudouridylate synthase n=1 Tax=Salinispora arenicola CNS-205
RepID=A8M4Z8_SALAI
Length = 276
Score = 69.3 bits (168), Expect = 2e-10
Identities = 51/130 (39%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Frame = +3
Query: 165 QRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVS--VTCSSRTDAGVH 338
Q R L + Y GT FSG Q RTV GVL +AF L + +T + RTDAGVH
Sbjct: 2 QERTRVRLDVSYDGTDFSGWAVQPDRRTVAGVLVQAFDLVLGSDAATGLTVAGRTDAGVH 61
Query: 339 ALSNVCHVDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHAR 518
A VCHVD+ RR HE +++R+ D+ V V VP DF AR
Sbjct: 62 ATGQVCHVDLLTEVWRR-------HEGTLLRRLARLL----PGDVRVRAVTGVPGDFDAR 110
Query: 519 YKAQERTYFY 548
+ A R Y Y
Sbjct: 111 FSATFRRYEY 120
[249][TOP]
>UniRef100_A3PVM0 Pseudouridylate synthase n=1 Tax=Mycobacterium sp. JLS
RepID=A3PVM0_MYCSJ
Length = 299
Score = 69.3 bits (168), Expect = 2e-10
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Frame = +3
Query: 153 MSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAG 332
+S + + R L + Y GT F+G Q RTV G+++EA PV+V + RTDAG
Sbjct: 16 LSSSRALTRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPVTVRAAGRTDAG 75
Query: 333 VHALSNVCHVDI--QRISKRRPGELLTPHEPSVVR--KAVNHFLQKHDNDLMVIDVRCVP 500
VHA V HVD+ + P P EP + + + FL D+ + D+ P
Sbjct: 76 VHATGQVAHVDVPDDALPHAYP-RSARPDEPEFLPLVRRLGRFLPA---DVRIRDIIRAP 131
Query: 501 SDFHARYKAQERTYFY 548
+ F AR+ A R Y Y
Sbjct: 132 TGFDARFSALRRHYTY 147
[250][TOP]
>UniRef100_C8PSC6 tRNA pseudouridine synthase A n=1 Tax=Treponema vincentii ATCC
35580 RepID=C8PSC6_9SPIO
Length = 265
Score = 69.3 bits (168), Expect = 2e-10
Identities = 51/129 (39%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Frame = +3
Query: 183 LLAIEYIGTRFSGSQKQL-----TCRTVVGVLEEAFCKFLSQPVSVTCSSRTDAGVHALS 347
LL I Y GTRF G QKQL + RTV G +E A PV + S RTDAGVHA
Sbjct: 13 LLRISYDGTRFHGWQKQLQHGEESFRTVQGEVERALALLHKHPVELFGSGRTDAGVHACG 72
Query: 348 NVCH--VDIQRISKRRPGELLTPHEPSVVRKAVNHFLQKHDNDLMVIDVRCVPSDFHARY 521
H DI RI +P A+N L K D+ +I+ V + HAR+
Sbjct: 73 QAAHFFTDIARI------------KPESFVPALNSALPK---DVRIIEAAHVSDNLHARF 117
Query: 522 KAQERTYFY 548
A+ RTY Y
Sbjct: 118 SARSRTYRY 126