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[1][TOP] >UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula RepID=Q2MGQ5_MEDTR Length = 318 Score = 172 bits (435), Expect = 1e-41 Identities = 88/103 (85%), Positives = 94/103 (91%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VFDID TQ+V V + E YSYDDEVIKKAEAMGKPGL+EITAKQDSFIF VE+TGAV Sbjct: 216 PTRVFDIDPVTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAV 275 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRGG 156 KASQL+LN+IEILKQKLDAVRLSEDTVEADD FGELGAHMRGG Sbjct: 276 KASQLLLNSIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318 [2][TOP] >UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7P9N6_VITVI Length = 318 Score = 171 bits (432), Expect = 3e-41 Identities = 85/103 (82%), Positives = 96/103 (93%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VFDIDA++Q+V V +AE Y+YDDEV+KKAEAMGKPGLVEI AK+DSFIF VE+TGA+ Sbjct: 216 PTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAI 275 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRGG 156 KASQLVLNAI++LKQKLDAVRLSEDTVEADD FGELGAHMRGG Sbjct: 276 KASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318 [3][TOP] >UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5B429_VITVI Length = 318 Score = 171 bits (432), Expect = 3e-41 Identities = 85/103 (82%), Positives = 96/103 (93%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VFDIDA++Q+V V +AE Y+YDDEV+KKAEAMGKPGLVEI AK+DSFIF VE+TGA+ Sbjct: 216 PTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAI 275 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRGG 156 KASQLVLNAI++LKQKLDAVRLSEDTVEADD FGELGAHMRGG Sbjct: 276 KASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318 [4][TOP] >UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus communis RepID=B9RYB6_RICCO Length = 318 Score = 168 bits (425), Expect = 2e-40 Identities = 85/103 (82%), Positives = 93/103 (90%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VFDID NTQ+V V + E Y+YD+EVIKKAE+MGKPGLV I AK+DSFIF VE+TGA+ Sbjct: 216 PTKVFDIDPNTQQVVVVDPEAYTYDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAI 275 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRGG 156 KASQLVLNAIEILKQKLDAVRLSEDTVEADD FGELGAHMRGG Sbjct: 276 KASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318 [5][TOP] >UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1 Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH Length = 319 Score = 157 bits (397), Expect = 3e-37 Identities = 79/103 (76%), Positives = 91/103 (88%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VF +D T++V V + E Y+YD+EVIKKAEAMGKPGL+EI+ K DSFIF VE+TGAV Sbjct: 217 PTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAV 276 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRGG 156 KASQLVLNAI++LKQKLDAVRLS+DTVEADD FGELGAHMRGG Sbjct: 277 KASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG 319 [6][TOP] >UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR Length = 346 Score = 157 bits (397), Expect = 3e-37 Identities = 81/101 (80%), Positives = 89/101 (88%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VFDID TQ+V V + E Y+YDDEVIKKAEAMGK GL++I AK+DSFIF VE+TGAV Sbjct: 221 PTKVFDIDKVTQQVVVVDPEAYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAV 280 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMR 162 KASQLVLNAIEILKQKLDAVRLS+DTVEADD FGELG HMR Sbjct: 281 KASQLVLNAIEILKQKLDAVRLSDDTVEADDQFGELGVHMR 321 [7][TOP] >UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis thaliana RepID=RPB3A_ARATH Length = 319 Score = 157 bits (397), Expect = 3e-37 Identities = 79/103 (76%), Positives = 91/103 (88%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VF +D T++V V + E Y+YD+EVIKKAEAMGKPGL+EI+ K DSFIF VE+TGAV Sbjct: 217 PTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAV 276 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRGG 156 KASQLVLNAI++LKQKLDAVRLS+DTVEADD FGELGAHMRGG Sbjct: 277 KASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG 319 [8][TOP] >UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SHD1_PHYPA Length = 324 Score = 151 bits (382), Expect = 2e-35 Identities = 76/103 (73%), Positives = 89/103 (86%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VF++D +Q+V V + E Y+YD+EV+KKAEAMGKPGLVEI +K+DSFIF VE+TGA+ Sbjct: 220 PTKVFELDPVSQQVVVVDPEAYTYDEEVLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAI 279 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRGG 156 KASQ+ LNAIEILK KLDAVRLS DT EADD FGELGAHMRGG Sbjct: 280 KASQMFLNAIEILKSKLDAVRLSFDTEEADDQFGELGAHMRGG 322 [9][TOP] >UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis thaliana RepID=RPB3B_ARATH Length = 319 Score = 150 bits (378), Expect = 5e-35 Identities = 76/103 (73%), Positives = 88/103 (85%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VF ID T +V V + E Y+YD+EVIKKAEAMGKPGL+EI K DSF+F VE+TGA+ Sbjct: 217 PTKVFGIDPVTGQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGAL 276 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRGG 156 KASQLVLNAI+ILKQKLDA+RLS++TVEADD FGELGAHMR G Sbjct: 277 KASQLVLNAIDILKQKLDAIRLSDNTVEADDQFGELGAHMREG 319 [10][TOP] >UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ Length = 330 Score = 138 bits (348), Expect = 2e-31 Identities = 69/103 (66%), Positives = 84/103 (81%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VF+ID NTQ+V V +AE Y+YDDEVIKKA+AMGKPGL+EI AK+DSFIF VETTGA+ Sbjct: 232 PTKVFNIDPNTQQVVVEDAEAYTYDDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAI 291 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRGG 156 A +L++NAI +L+QKLDAVRL +D D GELGAH+ GG Sbjct: 292 TAYELIMNAITVLRQKLDAVRLQDD----DADLGELGAHLVGG 330 [11][TOP] >UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea mays RepID=B6TCC3_MAIZE Length = 328 Score = 125 bits (314), Expect = 1e-27 Identities = 65/102 (63%), Positives = 80/102 (78%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VF++D+ Q V V AE Y+YDDEVIK AEA+GKPGLVEITAK+DSF+F VETTGA+ Sbjct: 231 PTKVFELDSANQ-VVVKNAEAYTYDDEVIKHAEAIGKPGLVEITAKEDSFVFTVETTGAI 289 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRG 159 A +L++NAI +L+QKLDAVRL +D D GELGAH+ G Sbjct: 290 TAYELIMNAITVLRQKLDAVRLQDD----DGDLGELGAHLGG 327 [12][TOP] >UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum bicolor RepID=C5X7D7_SORBI Length = 328 Score = 123 bits (308), Expect = 7e-27 Identities = 65/102 (63%), Positives = 78/102 (76%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VF +D+ Q V V AE Y+YDDEVIK AEA+GKPGLVEI AK+DSFIF VETTGA+ Sbjct: 231 PTKVFKLDSANQ-VVVDNAEAYTYDDEVIKHAEALGKPGLVEINAKEDSFIFTVETTGAI 289 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADDPFGELGAHMRG 159 A +L++NAI +L+QKLDAVRL +D D GELGAH+ G Sbjct: 290 TAYELIMNAITVLRQKLDAVRLQDD----DGDLGELGAHLGG 327 [13][TOP] >UniRef100_B9GHC8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GHC8_POPTR Length = 87 Score = 118 bits (296), Expect = 2e-25 Identities = 60/85 (70%), Positives = 73/85 (85%) Frame = -1 Query: 425 VYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEIL 246 V V + E Y+ DD+VIKKAEA GKPG+++I AK+D+F+FIV +TGA+KASQLVL+AIEIL Sbjct: 1 VVVLDPEAYTNDDKVIKKAEAKGKPGIIDIRAKEDNFVFIVGSTGAIKASQLVLDAIEIL 60 Query: 245 KQKLDAVRLSEDTVEADDPFGELGA 171 KQKLDAVRLS+D VEADD F EL A Sbjct: 61 KQKLDAVRLSDDIVEADDQFDELSA 85 [14][TOP] >UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp. RCC299 RepID=C1EBY2_9CHLO Length = 331 Score = 87.8 bits (216), Expect = 3e-16 Identities = 43/90 (47%), Positives = 64/90 (71%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 PT VF + T+KV V+ E+Y+YD E +K AE MGKPGLV+I AK+D+F+F VE+TGA+ Sbjct: 235 PTPVFRYNDQTRKVEVNMPESYTYDGECLKWAEDMGKPGLVDIRAKEDTFLFTVESTGAL 294 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEAD 195 +VLNA+++L KL+ + D V+++ Sbjct: 295 PPETIVLNALKVLDTKLEMTKSELDIVKSE 324 [15][TOP] >UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MVZ5_9CHLO Length = 333 Score = 85.1 bits (209), Expect = 2e-15 Identities = 41/93 (44%), Positives = 66/93 (70%), Gaps = 3/93 (3%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVH---EAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETT 294 PT +F D T++V V +A +Y YD E +KKAE +GKPGLV+I AK+D+F F VE+T Sbjct: 234 PTALFRYDEATRRVVVDAPDQARSYGYDGECLKKAEELGKPGLVDIRAKEDAFHFTVEST 293 Query: 293 GAVKASQLVLNAIEILKQKLDAVRLSEDTVEAD 195 GA++ ++V+NA+++L++K++ R D +E + Sbjct: 294 GALRPEEIVVNALKVLERKMEVTRGELDILERE 326 [16][TOP] >UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RSP9_OSTLU Length = 318 Score = 75.9 bits (185), Expect = 1e-12 Identities = 35/83 (42%), Positives = 54/83 (65%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 P+ +F DA+T + E+ +YD EV+KK +GKPGL+++ D F FIVE+TG + Sbjct: 227 PSKMFKYDADTDTFTLTSPESCTYDGEVMKKVNELGKPGLIDVRPGLDCFTFIVESTGVL 286 Query: 284 KASQLVLNAIEILKQKLDAVRLS 216 K ++VL A+ IL+ KLD + +S Sbjct: 287 KVEEVVLQAVHILQSKLDTIGVS 309 [17][TOP] >UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1 Tax=Ostreococcus tauri RepID=Q01F02_OSTTA Length = 301 Score = 70.1 bits (170), Expect = 7e-11 Identities = 34/91 (37%), Positives = 56/91 (61%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 P+ +F DA+ + + + ++D E++KK MGK GL++I DSF F VE+TG + Sbjct: 210 PSQMFKYDADLDTISLTSTGSCTFDGEIVKKVNEMGKHGLIDIRPCFDSFTFHVESTGVL 269 Query: 284 KASQLVLNAIEILKQKLDAVRLSEDTVEADD 192 A ++VL A+ IL+ KLD V D +E+++ Sbjct: 270 DAEEIVLQAVHILQTKLDTVGGELDMIESEN 300 [18][TOP] >UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium discoideum RepID=RPB3_DICDI Length = 302 Score = 68.6 bits (166), Expect = 2e-10 Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Frame = -1 Query: 467 CPTHVFDIDAN--TQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETT 294 CPT V+ + TQ+V + + Y E KKAE+ GKP LV + KQD FIF VE++ Sbjct: 211 CPTKVYSYSPHQSTQQVTIEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESS 270 Query: 293 GAVKASQLVLNAIEILKQKLDAVR 222 GA+K +VL AI+I+K+KL ++ Sbjct: 271 GALKPEDIVLYAIQIIKRKLTDIQ 294 [19][TOP] >UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SM40_PHYPA Length = 385 Score = 64.3 bits (155), Expect = 4e-09 Identities = 36/82 (43%), Positives = 53/82 (64%) Frame = -1 Query: 455 VFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAVKAS 276 VF +D T KV V Y+ E+ + EA G LVEI + DSFIF VE+TGA+ + Sbjct: 250 VFKLDPATSKVMVVSPGAYT-SQELQRNVEAAGMAELVEIAWRDDSFIFSVESTGAIAPA 308 Query: 275 QLVLNAIEILKQKLDAVRLSED 210 ++ ++A+ ILK+KL A+R++ED Sbjct: 309 KICVDAVNILKKKLLALRIAED 330 [20][TOP] >UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE Length = 308 Score = 62.8 bits (151), Expect = 1e-08 Identities = 31/81 (38%), Positives = 55/81 (67%) Frame = -1 Query: 467 CPTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGA 288 CP +VF +DAN Q + V+ E + +E I+ AE+M KP L+++ K++ +IF VE+ G Sbjct: 216 CPMNVFAMDAN-QDLIVNAIEKCVFCEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQ 274 Query: 287 VKASQLVLNAIEILKQKLDAV 225 +KA+ +V A+ +L++K+D + Sbjct: 275 LKAADIVQKALIVLRKKVDEI 295 [21][TOP] >UniRef100_A0CLS1 Chromosome undetermined scaffold_204, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CLS1_PARTE Length = 297 Score = 62.8 bits (151), Expect = 1e-08 Identities = 31/81 (38%), Positives = 55/81 (67%) Frame = -1 Query: 467 CPTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGA 288 CP +VF +DAN Q + V+ E + +E I+ AE+M KP L+++ K++ +IF VE+ G Sbjct: 205 CPMNVFAMDAN-QDLIVNAIEKCVFCEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQ 263 Query: 287 VKASQLVLNAIEILKQKLDAV 225 +KA+ +V A+ +L++K+D + Sbjct: 264 LKAADIVQKALIVLRKKVDEI 284 [22][TOP] >UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila RepID=CNJC_TETTH Length = 310 Score = 60.1 bits (144), Expect = 7e-08 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Frame = -1 Query: 467 CPTHVFDIDANTQKVYVHEAENYSYDDEVIKK-AEAMGKPGLVEITAKQDSFIFIVETTG 291 CPT VF I+ +T + V + Y +E + K AE KP L++I K+D F F VETTG Sbjct: 212 CPTKVFGINPHTNTLEVQDHMKCMYCEECVYKCAEDFQKPKLIKIDHKKDKFFFKVETTG 271 Query: 290 AVKASQLVLNAIEILKQKLDAVR 222 +K +++ L+QKLD +R Sbjct: 272 VMKPVEVLRRGFSTLRQKLDFMR 294 [23][TOP] >UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE Length = 275 Score = 54.7 bits (130), Expect = 3e-06 Identities = 26/66 (39%), Positives = 38/66 (57%) Frame = -1 Query: 464 PTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGAV 285 P+ F + T+ + V E+Y YD+E + KA +G+P LV I QD FIF VE TG + Sbjct: 210 PSKTFKFNPITRMIEVENEESYMYDEECVVKARELGRPDLVTIRQVQDHFIFRVEGTGVL 269 Query: 284 KASQLV 267 + +V Sbjct: 270 EVKSIV 275 [24][TOP] >UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT Length = 351 Score = 53.9 bits (128), Expect = 5e-06 Identities = 34/86 (39%), Positives = 46/86 (53%) Frame = -1 Query: 467 CPTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITAKQDSFIFIVETTGA 288 CP +VFDI+ T KVYV N + I+K P VEI + FIF +E+TG+ Sbjct: 267 CPMNVFDIEDITGKVYVKNPRNCTTCRACIEKF-----PKKVEIFKNKHHFIFSIESTGS 321 Query: 287 VKASQLVLNAIEILKQKLDAVRLSED 210 + QLV AI IL++K + S D Sbjct: 322 ISPIQLVKTAINILREKSHKINNSID 347