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[1][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 202 bits (514), Expect(2) = 4e-68
Identities = 97/98 (98%), Positives = 97/98 (98%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
IDLFIPFLHAEEEKLNFEN EHKVTLPLFTCHDLLAKT
Sbjct: 223 IDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKT 260
Score = 79.7 bits (195), Expect(2) = 4e-68
Identities = 38/39 (97%), Positives = 38/39 (97%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK F
Sbjct: 127 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNF 165
[2][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 181 bits (458), Expect(2) = 1e-57
Identities = 86/97 (88%), Positives = 89/97 (91%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNFQDGSY IDA FMPVRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDLFIPFLHAEE+ N EN +HKVTLPLFT HD+LAK
Sbjct: 223 IDLFIPFLHAEEDNFNLENNQHKVTLPLFTFHDILAK 259
Score = 66.2 bits (160), Expect(2) = 1e-57
Identities = 31/39 (79%), Positives = 34/39 (87%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIANVTEP+ LCI L+IER+RGYRI TLK F
Sbjct: 127 VEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNF 165
[3][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 181 bits (458), Expect(2) = 1e-57
Identities = 86/97 (88%), Positives = 89/97 (91%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNFQDGSY IDA FMPVRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDLFIPFLHAEE+ N EN +HKVTLPLFT HD+LAK
Sbjct: 223 IDLFIPFLHAEEDNFNLENNQHKVTLPLFTFHDILAK 259
Score = 66.2 bits (160), Expect(2) = 1e-57
Identities = 31/39 (79%), Positives = 34/39 (87%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIANVTEP+ LCI L+IER+RGYRI TLK F
Sbjct: 127 VEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNF 165
[4][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 182 bits (461), Expect(2) = 1e-56
Identities = 87/96 (90%), Positives = 89/96 (92%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N QDGSY IDA+FMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLHAEEE LNFEN +HKVTLPLFT HD L K
Sbjct: 224 DLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLLK 259
Score = 62.0 bits (149), Expect(2) = 1e-56
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTL 297
V IVDNTQHIAN+TEPI LCI LQIER RGYRI TL
Sbjct: 127 VEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTL 162
[5][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 177 bits (449), Expect(2) = 4e-55
Identities = 83/92 (90%), Positives = 87/92 (94%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N QDGSY IDA+FMPVRNANHSIHSYVNGN+KQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 163 NIQDGSYTIDAVFMPVRNANHSIHSYVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLI 222
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHD 17
DLFIPFLHAEEE LNFEN +HK+TLPLFT HD
Sbjct: 223 DLFIPFLHAEEENLNFENNQHKMTLPLFTFHD 254
Score = 61.2 bits (147), Expect(2) = 4e-55
Identities = 28/36 (77%), Positives = 31/36 (86%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTL 297
V ++DNTQHIAN+TEPI LCI LQIER RGYRI TL
Sbjct: 126 VEVIDNTQHIANLTEPINLCIELQIERKRGYRIKTL 161
[6][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 174 bits (441), Expect(2) = 6e-55
Identities = 83/97 (85%), Positives = 88/97 (90%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNFQDGSY+IDA FMPVRN N+SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS+NL
Sbjct: 163 KNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDLFIPFLHAEEE N E +HKVTLPLFT HD+L K
Sbjct: 223 IDLFIPFLHAEEENFNLEKKKHKVTLPLFTFHDILVK 259
Score = 63.9 bits (154), Expect(2) = 6e-55
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDN QHIANVTEP+ LCI L+IER+RGYRI TLK F
Sbjct: 127 VEIVDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNF 165
[7][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 174 bits (442), Expect(2) = 8e-55
Identities = 84/97 (86%), Positives = 89/97 (91%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 163 KNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDLFIPFLHAEEE L+ EN ++KVTLP FT HD LAK
Sbjct: 223 IDLFIPFLHAEEENLHLENNQYKVTLPFFTFHDRLAK 259
Score = 63.2 bits (152), Expect(2) = 8e-55
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQ+IAN+TEPI LCIGLQIER+RGY I T K F
Sbjct: 127 VEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNF 165
[8][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 170 bits (430), Expect(2) = 1e-53
Identities = 80/97 (82%), Positives = 88/97 (90%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNFQDGSY+IDA FMPVRN N+SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS+NL
Sbjct: 163 KNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
I+LFIPFLHAEE+ + E +HKVTLPLFT HD+L K
Sbjct: 223 IELFIPFLHAEEDNFHLEKNQHKVTLPLFTFHDILVK 259
Score = 63.9 bits (154), Expect(2) = 1e-53
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDN QHIANVTEP+ LCI L+IER+RGYRI TLK F
Sbjct: 127 VEIVDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNF 165
[9][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 169 bits (427), Expect(2) = 6e-52
Identities = 81/96 (84%), Positives = 85/96 (88%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N QD SY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NIQDESYTIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLHAEE+KLN EN + KVTLPLFT HD K
Sbjct: 224 DLFIPFLHAEEDKLNLENNQQKVTLPLFTFHDRFVK 259
Score = 59.3 bits (142), Expect(2) = 6e-52
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTL 297
V IVDNTQHIAN+TEPI LC+ L++ER+RGYRI TL
Sbjct: 127 VEIVDNTQHIANLTEPINLCMELKLERNRGYRIKTL 162
[10][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 168 bits (426), Expect(2) = 1e-51
Identities = 81/96 (84%), Positives = 86/96 (89%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLHAEEE L+ E +HKVTLPLFT H L K
Sbjct: 224 DLFIPFLHAEEENLHLEINQHKVTLPLFTFHGRLTK 259
Score = 58.5 bits (140), Expect(2) = 1e-51
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA++TE I LCIGLQIER+RGYRI F
Sbjct: 127 VEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNF 165
[11][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 162 bits (411), Expect(2) = 5e-51
Identities = 78/97 (80%), Positives = 82/97 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNF DGSY IDA+FMPVRNANHSIH Y N NEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 165 KNFHDGSYPIDAVFMPVRNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNL 224
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDLFIPFLH EEE L+ EN +H VTLP F HD L K
Sbjct: 225 IDLFIPFLHTEEENLHLENNQHDVTLPFFPFHDRLVK 261
Score = 62.4 bits (150), Expect(2) = 5e-51
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQH+A++TEPI LCIGLQIER+RGY I T K F
Sbjct: 129 VEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNF 167
[12][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 164 bits (414), Expect(2) = 6e-51
Identities = 78/96 (81%), Positives = 82/96 (85%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF DGSY ID +FMPVRN NHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 166 NFHDGSYPIDVVFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 225
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLHAEEE + EN +HKVTLP F HD L K
Sbjct: 226 DLFIPFLHAEEENSHLENSQHKVTLPFFPFHDKLTK 261
Score = 60.8 bits (146), Expect(2) = 6e-51
Identities = 29/39 (74%), Positives = 32/39 (82%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI LCIGLQIER+RGY I T F
Sbjct: 129 VEIVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNF 167
[13][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 173 bits (438), Expect(2) = 1e-50
Identities = 81/97 (83%), Positives = 88/97 (90%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNFQDGSY+IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 163 KNFQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDLFIPFLHAEEE + E +HK+TLPLF HD LAK
Sbjct: 223 IDLFIPFLHAEEENFHLEKNQHKITLPLFAFHDRLAK 259
Score = 50.4 bits (119), Expect(2) = 1e-50
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA++ EPI L IGL+IER+RGY + K F
Sbjct: 127 VEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNF 165
[14][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 173 bits (438), Expect(2) = 1e-50
Identities = 81/97 (83%), Positives = 88/97 (90%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNFQDGSY+IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 163 KNFQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDLFIPFLHAEEE + E +HK+TLPLF HD LAK
Sbjct: 223 IDLFIPFLHAEEESFHLEKNQHKITLPLFAFHDRLAK 259
Score = 50.4 bits (119), Expect(2) = 1e-50
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA++ EPI L IGL+IER+RGY + K F
Sbjct: 127 VEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNF 165
[15][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 166 bits (420), Expect(2) = 2e-50
Identities = 83/98 (84%), Positives = 88/98 (89%), Gaps = 2/98 (2%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQD SY +DAIFMPVRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNF--ENXEHKVTLPLFTCHDLLAK 5
DLFIPFLHAEEEK NF +N + KVTLPLFT H+ LAK
Sbjct: 224 DLFIPFLHAEEEKENFHLKNNKKKVTLPLFTFHEKLAK 261
Score = 56.6 bits (135), Expect(2) = 2e-50
Identities = 27/39 (69%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIAN+ EPI LCI L+IER+RGY I T F
Sbjct: 127 VEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNF 165
[16][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 166 bits (420), Expect(2) = 3e-50
Identities = 80/96 (83%), Positives = 85/96 (88%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVQNANHSIHSYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
+LFIPFLHAEEEK EN +HKVTLP F HD LAK
Sbjct: 224 NLFIPFLHAEEEKFYLENNQHKVTLPFFPFHDRLAK 259
Score = 56.2 bits (134), Expect(2) = 3e-50
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI L IGLQIER+RGY I T F
Sbjct: 127 VEIVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNF 165
[17][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 164 bits (416), Expect(2) = 9e-50
Identities = 80/96 (83%), Positives = 85/96 (88%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHSIHSY NGNE+QEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLHAEEE L+ E +HK TLP T HD LAK
Sbjct: 224 DLFIPFLHAEEETLHLEYNQHKSTLPPLTFHDRLAK 259
Score = 56.2 bits (134), Expect(2) = 9e-50
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA + EPI LCIGLQIER+RGY I F
Sbjct: 127 VEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNF 165
[18][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 164 bits (416), Expect(2) = 9e-50
Identities = 80/96 (83%), Positives = 85/96 (88%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHSIHSY NGNE+QEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 158 NFQDGSYPIDAVFMPVRNANHSIHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLI 217
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLHAEEE L+ E +HK TLP T HD LAK
Sbjct: 218 DLFIPFLHAEEETLHLEYNQHKSTLPPLTFHDRLAK 253
Score = 56.2 bits (134), Expect(2) = 9e-50
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA + EPI LCIGLQIER+RGY I F
Sbjct: 121 VEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNF 159
[19][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 157 bits (398), Expect(2) = 2e-49
Identities = 78/96 (81%), Positives = 83/96 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQ+GSY IDA+FMPVRNANHSIHSYVNGNE QEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFQNGSYPIDAVFMPVRNANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPF HAEE + EN +HK TLPLF H LAK
Sbjct: 224 DLFIPFFHAEE---HLENNQHKGTLPLFNFHGRLAK 256
Score = 62.0 bits (149), Expect(2) = 2e-49
Identities = 30/39 (76%), Positives = 32/39 (82%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIAN+TEPI LCI LQIER+RGYRI T F
Sbjct: 127 VEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNF 165
[20][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 159 bits (402), Expect(2) = 3e-49
Identities = 77/97 (79%), Positives = 84/97 (86%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
+NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 163 QNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDLFIPFLH EE+ L ++ +H V L FT HD LAK
Sbjct: 223 IDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
Score = 59.7 bits (143), Expect(2) = 3e-49
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI CIGLQIER+RGY I T + F
Sbjct: 127 VEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNF 165
[21][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 160 bits (404), Expect(2) = 3e-49
Identities = 78/96 (81%), Positives = 86/96 (89%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGS+ IDA+FMPVRN NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NFQDGSFPIDALFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DL IPFLHA EE +N E+ +HKV+LPLFT H+ LA+
Sbjct: 224 DLLIPFLHA-EENVNLEDNQHKVSLPLFTFHNRLAE 258
Score = 58.9 bits (141), Expect(2) = 3e-49
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI LCIGLQ+ER+RGY I F
Sbjct: 127 VEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNF 165
[22][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 161 bits (407), Expect(2) = 4e-49
Identities = 78/96 (81%), Positives = 84/96 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLF+PFLHAEEE L+ N ++ VT PLFT H LAK
Sbjct: 224 DLFLPFLHAEEENLHLGNNKYNVTFPLFTFHKKLAK 259
Score = 57.4 bits (137), Expect(2) = 4e-49
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA++ EPI LCIGLQIER+RGY I + F
Sbjct: 127 VEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNF 165
[23][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 162 bits (410), Expect(2) = 7e-49
Identities = 78/96 (81%), Positives = 85/96 (88%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N QDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NSQDGSYPIDAVFMPVRNANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLHA+EE + E+ ++ VTLP FT HD LAK
Sbjct: 224 DLFIPFLHAQEENILLEDNQNGVTLPFFTFHDRLAK 259
Score = 55.5 bits (132), Expect(2) = 7e-49
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V VDNTQHIAN+TEPI CI L+IER+RGYR+ T
Sbjct: 127 VETVDNTQHIANLTEPIDFCIELEIERNRGYRMKT 161
[24][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 160 bits (405), Expect(2) = 7e-49
Identities = 78/97 (80%), Positives = 84/97 (86%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDG Y IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 163 KNSQDGRYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDLFIPFLHA EE ++ ++KV LPLFT HD LAK
Sbjct: 223 IDLFIPFLHANEENFILKDNQNKVALPLFTFHDRLAK 259
Score = 57.4 bits (137), Expect(2) = 7e-49
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V I+D TQHIA++TEPI LCIGLQIER+RGY + T K
Sbjct: 127 VEIIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPK 163
[25][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 159 bits (401), Expect(2) = 7e-49
Identities = 77/96 (80%), Positives = 83/96 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH EE+ L ++ +H V L FT HD LAK
Sbjct: 224 DLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
Score = 58.9 bits (141), Expect(2) = 7e-49
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI CIGLQIER+RGY I T F
Sbjct: 127 VEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNF 165
[26][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 157 bits (397), Expect(2) = 1e-48
Identities = 76/96 (79%), Positives = 82/96 (85%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N +DGSY IDA+FMPVRNANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 165 NSKDGSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLI 224
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH EEE L+ N +H V LP FT HD L K
Sbjct: 225 DLFIPFLHTEEENLHLANNQHMVPLPPFTFHDKLDK 260
Score = 60.1 bits (144), Expect(2) = 1e-48
Identities = 27/35 (77%), Positives = 32/35 (91%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V +VDNTQHIA++TEPI+LCIGLQIER+RGY I T
Sbjct: 127 VEVVDNTQHIASLTEPIELCIGLQIERNRGYLIKT 161
[27][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 156 bits (395), Expect(2) = 1e-48
Identities = 76/96 (79%), Positives = 84/96 (87%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRNANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 163 KNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLA 8
IDLFIPFLHAEEE +NFE +++ T+P FT D LA
Sbjct: 223 IDLFIPFLHAEEEDINFEENQNRFTVPPFTFPDRLA 258
Score = 60.8 bits (146), Expect(2) = 1e-48
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V +VD TQHIA++TEPI LCIGLQI+RDRGYR+ T K
Sbjct: 127 VEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTK 163
[28][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 156 bits (395), Expect(2) = 1e-48
Identities = 76/96 (79%), Positives = 84/96 (87%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRNANHSIHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 163 KNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLA 8
IDLFIPFLHAEEE +NFE +++ T+P FT D LA
Sbjct: 223 IDLFIPFLHAEEEDINFEENQNRFTVPPFTFPDRLA 258
Score = 60.8 bits (146), Expect(2) = 1e-48
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V +VD TQHIA++TEPI LCIGLQI+RDRGYR+ T K
Sbjct: 127 VEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTK 163
[29][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 154 bits (389), Expect(2) = 1e-48
Identities = 74/95 (77%), Positives = 84/95 (88%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDGSY ID +FMPVRNANHSIHSY NG EKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NYQDGSYPIDTVFMPVRNANHSIHSYGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLA 8
+LFIPFLHAEE+++ E+ E+ T+PLFT H+ LA
Sbjct: 224 NLFIPFLHAEEQEILLEDSENISTVPLFTFHNELA 258
Score = 63.2 bits (152), Expect(2) = 1e-48
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVD TQHIAN+TEPI LCIGLQIERDRGYR+ T
Sbjct: 127 VEIVDTTQHIANLTEPIDLCIGLQIERDRGYRLKT 161
[30][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 159 bits (402), Expect(2) = 1e-48
Identities = 76/96 (79%), Positives = 83/96 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI
Sbjct: 165 NFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI 224
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH EEE L+ + +H V LP FT H+ L K
Sbjct: 225 DLFIPFLHTEEENLHLADNQHTVPLPPFTFHEKLTK 260
Score = 57.8 bits (138), Expect(2) = 1e-48
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVDNTQHIA++ EPI LCIGLQIER+RGY I T
Sbjct: 127 VEIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKT 161
[31][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 160 bits (404), Expect(2) = 1e-48
Identities = 78/96 (81%), Positives = 84/96 (87%), Gaps = 2/96 (2%)
Frame = -2
Query: 286 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 107
QDGSY+IDA+FMPVRNANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 168 QDGSYSIDAVFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDF 227
Query: 106 FIPFLHAEEEKLN--FENXEHKVTLPLFTCHDLLAK 5
FIPFLHAEEE L+ E +HKVTLPLF HD L K
Sbjct: 228 FIPFLHAEEENLHLEIEKNQHKVTLPLFCFHDKLTK 263
Score = 57.0 bits (136), Expect(2) = 1e-48
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA++T+ I LCIGLQIER+RGYRI F
Sbjct: 127 VEIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNF 165
[32][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 158 bits (400), Expect(2) = 2e-48
Identities = 77/98 (78%), Positives = 84/98 (85%), Gaps = 2/98 (2%)
Frame = -2
Query: 292 NFQDGSYNIDA--IFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 119
N QDGSY ID +FMPV +AN+SIHSY+N NEKQEILFLEIWTNGSLTPKEALYEA+RN
Sbjct: 164 NIQDGSYTIDVDPVFMPVIHANYSIHSYLNANEKQEILFLEIWTNGSLTPKEALYEAARN 223
Query: 118 LIDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
LIDLFIPFLHAEEE +FEN +HKVTLPLF HD L K
Sbjct: 224 LIDLFIPFLHAEEENFHFENNQHKVTLPLFAFHDRLVK 261
Score = 58.2 bits (139), Expect(2) = 2e-48
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTL 297
V IVDNTQHIAN+TEPI LCI LQIER RGYR T+
Sbjct: 127 VEIVDNTQHIANLTEPINLCIELQIERARGYRKKTI 162
[33][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 159 bits (401), Expect(2) = 2e-48
Identities = 77/96 (80%), Positives = 83/96 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLF+PFLHAEEE L+ ++ VT PLFT H LAK
Sbjct: 224 DLFLPFLHAEEENLHLGKNKYNVTFPLFTFHKKLAK 259
Score = 57.4 bits (137), Expect(2) = 2e-48
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA++ EPI LCIGLQIER+RGY I + F
Sbjct: 127 VEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNF 165
[34][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 158 bits (399), Expect(2) = 2e-48
Identities = 76/94 (80%), Positives = 85/94 (90%)
Frame = -2
Query: 286 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 107
Q+GSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDL
Sbjct: 166 QNGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL 225
Query: 106 FIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
FIPFLHAEE+ + E+ +++VTLP FT HD LAK
Sbjct: 226 FIPFLHAEEQDIILEDNQNRVTLPFFTFHDGLAK 259
Score = 58.2 bits (139), Expect(2) = 2e-48
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKK 291
V IVD TQHIA++TEP LCIGLQIER+RGYR+ T K
Sbjct: 127 VEIVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNK 164
[35][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 157 bits (396), Expect(2) = 3e-48
Identities = 75/96 (78%), Positives = 83/96 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH EE+ L ++ +H V L FT HD LAK
Sbjct: 224 DLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
Score = 58.9 bits (141), Expect(2) = 3e-48
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI CIGLQIER+RGY I T F
Sbjct: 127 VEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNF 165
[36][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 157 bits (396), Expect(2) = 3e-48
Identities = 75/96 (78%), Positives = 83/96 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILF+EIWTNGSLTPKEAL++ASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH EE+ L ++ +H V L FT HD LAK
Sbjct: 224 DLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
Score = 58.9 bits (141), Expect(2) = 3e-48
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI CIGLQIER+RGY I T F
Sbjct: 127 VEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNF 165
[37][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 156 bits (394), Expect(2) = 6e-48
Identities = 75/94 (79%), Positives = 83/94 (88%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N Q+GSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NSQNGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
DLFIPFLHAEEE +NF+ +++ TLP+FT D L
Sbjct: 224 DLFIPFLHAEEEDINFKENKNRFTLPIFTFQDRL 257
Score = 58.5 bits (140), Expect(2) = 6e-48
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V IVD TQHIAN+TEPI LCIGLQI RDRGYR
Sbjct: 127 VEIVDTTQHIANLTEPIDLCIGLQIRRDRGYR 158
[38][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 157 bits (398), Expect(2) = 8e-48
Identities = 73/92 (79%), Positives = 82/92 (89%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGS TPKEALYEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHD 17
DLF+PFLHAEE+ +N E+ +++ T PLFT HD
Sbjct: 224 DLFLPFLHAEEQDINVEDNQNRATAPLFTFHD 255
Score = 56.6 bits (135), Expect(2) = 8e-48
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVD TQ+IA++TEPI LCI LQIERDRGYRI T
Sbjct: 127 VKIVDTTQYIASLTEPIDLCIELQIERDRGYRIKT 161
[39][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 159 bits (401), Expect(2) = 2e-47
Identities = 77/96 (80%), Positives = 83/96 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH EE+ L ++ +H V L FT HD LAK
Sbjct: 224 DLFIPFLHIEEDNLYLQDNQHTVPLSPFTFHDKLAK 259
Score = 54.3 bits (129), Expect(2) = 2e-47
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TE I CIGLQI+R+RGY I T F
Sbjct: 127 VEIVDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNF 165
[40][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 157 bits (397), Expect(2) = 2e-47
Identities = 78/103 (75%), Positives = 87/103 (84%)
Frame = -2
Query: 313 IV*TH*KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALY 134
I+ TH NF+DGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+
Sbjct: 158 ILKTH-HNFEDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALH 216
Query: 133 EASRNLIDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
EASRNLIDLFIPFLH EEE L+ E+ EH + L + HD +AK
Sbjct: 217 EASRNLIDLFIPFLHMEEENLHLEDGEHTIPLSPLSFHDKVAK 259
Score = 55.8 bits (133), Expect(2) = 2e-47
Identities = 27/39 (69%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA +TEPI CIGLQIER+RGY + T F
Sbjct: 127 VEIVDNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNF 165
[41][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 156 bits (394), Expect(2) = 2e-47
Identities = 76/94 (80%), Positives = 82/94 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
DLFIPFLHAEEE +NFE +++ LPLFT + L
Sbjct: 224 DLFIPFLHAEEEDINFEENKNRFPLPLFTFQNRL 257
Score = 56.6 bits (135), Expect(2) = 2e-47
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVD TQHIAN+TEPI LCI LQI+RDRGYR+ +
Sbjct: 127 VEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKS 161
[42][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 159 bits (403), Expect(2) = 2e-47
Identities = 77/95 (81%), Positives = 83/95 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N QDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLA 8
DLF+PFLHAEEE +NFE ++K TLP T D L+
Sbjct: 224 DLFVPFLHAEEEDINFEENKNKFTLPPLTFQDRLS 258
Score = 53.1 bits (126), Expect(2) = 2e-47
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTL 297
V IVD TQ+IAN+TEPI LCI L+I+RDRGYR+ +
Sbjct: 127 VEIVDTTQYIANLTEPIDLCIELEIKRDRGYRMKPI 162
[43][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 158 bits (399), Expect(2) = 2e-47
Identities = 75/94 (79%), Positives = 82/94 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY ID +FMPVRN NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NFQDGSYPIDVVFMPVRNVNHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
DLFIPFL+AE+E + E+ + +VTLPLF HD L
Sbjct: 224 DLFIPFLYAEKENFHLEDNQDRVTLPLFLFHDRL 257
Score = 54.7 bits (130), Expect(2) = 2e-47
Identities = 27/39 (69%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD TQHIAN+TEPI L I LQ+ER+RGYRI T F
Sbjct: 127 VEIVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNF 165
[44][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 155 bits (393), Expect(2) = 2e-47
Identities = 74/96 (77%), Positives = 83/96 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
+F+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNG+LTPKEAL+EASRNLI
Sbjct: 164 HFEDGSYPIDALFMPVQNANHSIHSYGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
+LFIPFLH EEE EN +HKVTLPLF H+ L K
Sbjct: 224 NLFIPFLHVEEETFYLENNQHKVTLPLFPFHNRLVK 259
Score = 57.0 bits (136), Expect(2) = 2e-47
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA +TEPI LCIGLQIER+RGY + F
Sbjct: 127 VEIIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHF 165
[45][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 155 bits (391), Expect(2) = 5e-47
Identities = 73/94 (77%), Positives = 82/94 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
+LFIPFLH EEE EN +H+VTLP+F H+ L
Sbjct: 224 NLFIPFLHVEEETFYLENNQHQVTLPVFPFHNKL 257
Score = 56.6 bits (135), Expect(2) = 5e-47
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA +TEPI LCIGL+IER+RGY + F
Sbjct: 127 VEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNF 165
[46][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 153 bits (387), Expect(2) = 7e-47
Identities = 74/95 (77%), Positives = 83/95 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDGSY IDA+ MPVRNANHSIHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLA 8
DLFIPFLHAEE+ + E+ ++ T+PLFT HD LA
Sbjct: 224 DLFIPFLHAEEQDIVLEDNPNRFTVPLFTFHDRLA 258
Score = 57.8 bits (138), Expect(2) = 7e-47
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVD TQHIA++TEPI LCI LQIERDRGYR+ T
Sbjct: 127 VEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKT 161
[47][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 149 bits (375), Expect(2) = 7e-47
Identities = 72/89 (80%), Positives = 77/89 (86%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNF DGSY IDA+FMPVRNANHSIH Y N NEKQEILFLEIWTNGSLTPKEAL+EASRNL
Sbjct: 165 KNFHDGSYPIDAVFMPVRNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNL 224
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLF 29
IDLFI FLHA+EE L+ EN +H VTL F
Sbjct: 225 IDLFIHFLHAKEENLHLENNQHDVTLHFF 253
Score = 62.4 bits (150), Expect(2) = 7e-47
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQH+A++TEPI LCIGLQIER+RGY I T K F
Sbjct: 129 VEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNF 167
[48][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 154 bits (389), Expect(2) = 7e-47
Identities = 77/96 (80%), Positives = 84/96 (87%), Gaps = 1/96 (1%)
Frame = -2
Query: 289 FQDGS-YNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
FQDG+ Y IDA+FMPVRNANHSI SY NGNEKQEILFLEIWTNGSLTPKEAL+EASR+LI
Sbjct: 165 FQDGNCYPIDAVFMPVRNANHSIQSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLI 224
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFL AE+E L EN ++KVTLP FT HD LAK
Sbjct: 225 DLFIPFLQAEDENLPLENNQYKVTLPFFTFHDRLAK 260
Score = 57.0 bits (136), Expect(2) = 7e-47
Identities = 28/39 (71%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI L IGLQIER RGY I T F
Sbjct: 127 VEIVDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTF 165
[49][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 155 bits (391), Expect(2) = 7e-47
Identities = 74/94 (78%), Positives = 82/94 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
+LFIPFLH EEE EN +H+VTLPLF H+ L
Sbjct: 224 NLFIPFLHVEEETFYLENNQHQVTLPLFPFHNRL 257
Score = 56.2 bits (134), Expect(2) = 7e-47
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA +TEPI LCIGL+IER+RGY + F
Sbjct: 127 VEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNF 165
[50][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 155 bits (391), Expect(2) = 7e-47
Identities = 74/94 (78%), Positives = 82/94 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
+LFIPFLH EEE EN +H+VTLPLF H+ L
Sbjct: 224 NLFIPFLHVEEETFYLENNQHQVTLPLFPFHNRL 257
Score = 56.2 bits (134), Expect(2) = 7e-47
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA +TEPI LCIGL+IER+RGY + F
Sbjct: 127 VEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNF 165
[51][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 154 bits (390), Expect(2) = 7e-47
Identities = 76/96 (79%), Positives = 80/96 (83%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EA RNLI
Sbjct: 138 NFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLI 197
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH EEE L E+ +H V L T HD L K
Sbjct: 198 DLFIPFLHKEEENLPLEDNQHTVPLSPLTFHDKLDK 233
Score = 56.6 bits (135), Expect(2) = 7e-47
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI LCIGLQI+R+RGY I F
Sbjct: 101 VEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNF 139
[52][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 152 bits (384), Expect(2) = 9e-47
Identities = 73/96 (76%), Positives = 82/96 (85%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
+Q+GSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 YQNGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224
Query: 109 LFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
LFIPFLHAEEE + E+ ++ +P FT HD LA T
Sbjct: 225 LFIPFLHAEEEGIRLEDNPNRFNIPFFTFHDGLANT 260
Score = 58.5 bits (140), Expect(2) = 9e-47
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD TQHIA++TEPI LCI LQI+RDRGYR+ T K+
Sbjct: 127 VEIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKY 165
[53][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 157 bits (398), Expect(2) = 1e-46
Identities = 76/94 (80%), Positives = 83/94 (88%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N QDGSY IDA+FMPVRNANHSI+SY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NSQDGSYPIDAVFMPVRNANHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
DLFIPFLHAEE+ +N E + + TLPLFT HD L
Sbjct: 224 DLFIPFLHAEEKDINLEENKSRFTLPLFTFHDKL 257
Score = 52.4 bits (124), Expect(2) = 1e-46
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V IVD TQHIA +TEP+ L IGLQI+RDRGYR+
Sbjct: 127 VEIVDTTQHIATLTEPLDLYIGLQIQRDRGYRM 159
[54][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 154 bits (389), Expect(2) = 3e-46
Identities = 76/98 (77%), Positives = 83/98 (84%), Gaps = 2/98 (2%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGN--EKQEILFLEIWTNGSLTPKEALYEASRN 119
NFQDGSY IDA+FMP+RNANHSIHSY NGN +KQEILFLEIWTNGSLTPKEAL+EASRN
Sbjct: 165 NFQDGSYPIDAVFMPIRNANHSIHSYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRN 224
Query: 118 LIDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
LIDLFIPFLH EEE L+ + +H V LP FT HD L K
Sbjct: 225 LIDLFIPFLHTEEENLHLADNQHMVPLPPFTFHDNLDK 262
Score = 55.1 bits (131), Expect(2) = 3e-46
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V +VDNTQHIA++TEPI+L IGLQIER RGY I T
Sbjct: 127 VEVVDNTQHIASLTEPIELHIGLQIERSRGYLIKT 161
[55][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 154 bits (388), Expect(2) = 3e-46
Identities = 75/94 (79%), Positives = 82/94 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 162 NSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 221
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
DLFIPFLHAEE ++FE +++ TLPLFT + L
Sbjct: 222 DLFIPFLHAEEGDIHFEENKNRFTLPLFTFQNRL 255
Score = 55.1 bits (131), Expect(2) = 3e-46
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRIN 303
V IVD TQHIAN+TEPI L I LQI+RDRGYRIN
Sbjct: 125 VEIVDTTQHIANLTEPIDLRIELQIKRDRGYRIN 158
[56][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 155 bits (391), Expect(2) = 3e-46
Identities = 74/94 (78%), Positives = 82/94 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
+LFIPFLH EEE EN +H+VTLPLF H+ L
Sbjct: 224 NLFIPFLHVEEETFYLENNQHQVTLPLFPFHNRL 257
Score = 53.9 bits (128), Expect(2) = 3e-46
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA + EPI LCIGL+IER+RGY + F
Sbjct: 127 VEIIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNF 165
[57][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 154 bits (388), Expect(2) = 4e-46
Identities = 75/96 (78%), Positives = 82/96 (85%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N Q+ SY IDA+FMPVRNANHSIHSY NGNEKQEILFLEIWT+GSLTPKEALYEASRNLI
Sbjct: 164 NAQERSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLHAEE+ E+ + +VTLP FT HD L K
Sbjct: 224 DLFIPFLHAEEQDTKLEDNQSRVTLPFFTFHDGLDK 259
Score = 54.7 bits (130), Expect(2) = 4e-46
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVD TQHIA++TEPI LCI LQIER+RGYR+ T
Sbjct: 127 VEIVDITQHIASLTEPIDLCIELQIERNRGYRMKT 161
[58][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 155 bits (391), Expect(2) = 6e-46
Identities = 74/94 (78%), Positives = 82/94 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
+LFIPFLH EEE EN +H+VTLPLF H+ L
Sbjct: 224 NLFIPFLHVEEETFYLENNQHQVTLPLFPFHNRL 257
Score = 53.1 bits (126), Expect(2) = 6e-46
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA +TEPI LCI L+IER+RGY + F
Sbjct: 127 VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF 165
[59][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 153 bits (387), Expect(2) = 6e-46
Identities = 73/94 (77%), Positives = 82/94 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+D SY IDA+FMPV+NANHSIHSY NGN KQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDRSYPIDAVFMPVQNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
+LFIPFLH EEE + EN +H+VTLPLF H+ L
Sbjct: 224 NLFIPFLHVEEETFHLENNQHQVTLPLFPFHNRL 257
Score = 54.7 bits (130), Expect(2) = 6e-46
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA VTE I LCIGL+IER+RGY + F
Sbjct: 127 VEIVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNF 165
[60][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 154 bits (388), Expect(2) = 6e-46
Identities = 75/93 (80%), Positives = 82/93 (88%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
+GSY IDA+FMPVRNANHSIHSY NG+E+QEILFLEIWTNGSLTPKEAL+EASRNLIDLF
Sbjct: 158 NGSYPIDAVFMPVRNANHSIHSYGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLF 217
Query: 103 IPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IPFLHAEEE L+ E +HK TLP T HD LAK
Sbjct: 218 IPFLHAEEETLHLEYNQHKGTLPPLTFHDRLAK 250
Score = 54.3 bits (129), Expect(2) = 6e-46
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGY 312
V IVDNTQHIA + EPI LCIGLQIER+RGY
Sbjct: 127 VEIVDNTQHIARLMEPIDLCIGLQIERNRGY 157
[61][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 156 bits (395), Expect(2) = 7e-46
Identities = 76/94 (80%), Positives = 81/94 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
DLFIPFLHAEEE +NFE +++ TLP T D L
Sbjct: 224 DLFIPFLHAEEEDINFEENKNRFTLPFLTFQDRL 257
Score = 51.2 bits (121), Expect(2) = 7e-46
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V IVD TQHIAN+TEPI L I LQI+RDRGYR+
Sbjct: 127 VEIVDPTQHIANLTEPIDLYIELQIKRDRGYRM 159
[62][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 151 bits (381), Expect(2) = 9e-46
Identities = 73/95 (76%), Positives = 80/95 (84%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
F+DGSY IDA+FMPV+NANHSIHSY GNE QEILFLEIWTNG+LTPKEAL+EASRNLI+
Sbjct: 165 FEDGSYPIDALFMPVQNANHSIHSYGTGNENQEILFLEIWTNGNLTPKEALHEASRNLIN 224
Query: 109 LFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
LFIPFLH EEE EN E KVTLPLF H+ L K
Sbjct: 225 LFIPFLHVEEETFYLENNEDKVTLPLFPFHNRLVK 259
Score = 56.2 bits (134), Expect(2) = 9e-46
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA +TEPI LCIGLQIER+RGY + F
Sbjct: 127 VEIMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPF 165
[63][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 152 bits (384), Expect(2) = 1e-45
Identities = 74/96 (77%), Positives = 84/96 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+DGSY IDA+FMPVRNANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDGSYPIDAVFMPVRNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLI 221
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH EEE L+ E+ +H ++L FT +D +AK
Sbjct: 222 DLFIPFLHMEEENLHLEDADHTISLSPFTVYDKVAK 257
Score = 54.7 bits (130), Expect(2) = 1e-45
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD+TQHIA +TEPI LCIGL+IER+RGY I T F
Sbjct: 127 VEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNF 165
[64][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 154 bits (388), Expect(2) = 1e-45
Identities = 73/94 (77%), Positives = 82/94 (87%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
+LFIPFLH EEE + EN +H+VTLP F H+ L
Sbjct: 224 NLFIPFLHVEEETVYLENNQHQVTLPFFPFHNRL 257
Score = 53.1 bits (126), Expect(2) = 1e-45
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA +TEPI LCI L+IER+RGY + F
Sbjct: 127 VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF 165
[65][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 154 bits (388), Expect(2) = 2e-45
Identities = 75/97 (77%), Positives = 83/97 (85%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N +DGSY IDAIFMPVRNANHS+HSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NDEDGSYPIDAIFMPVRNANHSVHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLHAEE +++ E+ + V L LFT HD A T
Sbjct: 224 DLFIPFLHAEEREIHLEDNANGVPLALFTFHDEFAIT 260
Score = 52.8 bits (125), Expect(2) = 2e-45
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVD TQHIAN+TE + LCI LQIERDRGY + T
Sbjct: 127 VEIVDATQHIANLTERVDLCIKLQIERDRGYSMKT 161
[66][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 152 bits (384), Expect(2) = 2e-45
Identities = 73/97 (75%), Positives = 82/97 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
+NFQDGSY IDA+FMP+RNAN+SIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNL
Sbjct: 163 QNFQDGSYPIDAVFMPIRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDLFIPFLH EE+ + EN +H V L F HD L K
Sbjct: 223 IDLFIPFLHMEEQNSHLENNQHTVPLAPFFFHDKLDK 259
Score = 54.3 bits (129), Expect(2) = 2e-45
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA + EPI LCI L+IER+RGY I T + F
Sbjct: 127 VEIVDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNF 165
[67][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 153 bits (387), Expect(2) = 2e-45
Identities = 73/94 (77%), Positives = 81/94 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
+LFIPFLH EEE EN +H+VTLP F H+ L
Sbjct: 224 NLFIPFLHVEEETFYLENNQHQVTLPFFPFHNRL 257
Score = 53.1 bits (126), Expect(2) = 2e-45
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA +TEPI LCI L+IER+RGY + F
Sbjct: 127 VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF 165
[68][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 151 bits (382), Expect(2) = 2e-45
Identities = 75/93 (80%), Positives = 80/93 (86%), Gaps = 1/93 (1%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N Q GSY IDA+FMPVRNANHSIHSY NGNE QEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NAQKGSYPIDAVFMPVRNANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNF-ENXEHKVTLPLFTCHD 17
DLFIPFLHAEE+ N +N ++ VTLP FT HD
Sbjct: 224 DLFIPFLHAEEQDQNLKDNQKNGVTLPFFTFHD 256
Score = 54.7 bits (130), Expect(2) = 2e-45
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVD TQHIA++TEP+ CIGLQIE +RGYR+ T
Sbjct: 127 VEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKT 161
[69][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 150 bits (379), Expect(2) = 3e-45
Identities = 71/92 (77%), Positives = 79/92 (85%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N +D SY IDA+FMPV+NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NLEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHD 17
+LFIPFLH EEE EN +H+VTLP F H+
Sbjct: 224 NLFIPFLHVEEETFYLENNQHQVTLPFFPFHN 255
Score = 55.5 bits (132), Expect(2) = 3e-45
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V IVDNTQHIA +TEPI LCIGL+IER+RGY +
Sbjct: 127 VEIVDNTQHIATLTEPIDLCIGLKIERNRGYSL 159
[70][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 157 bits (396), Expect(2) = 4e-45
Identities = 74/92 (80%), Positives = 81/92 (88%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHD 17
DLFIPFLHAEE+ +N E+ + T+P FT HD
Sbjct: 224 DLFIPFLHAEEQDINIEDNLKRATVPFFTFHD 255
Score = 48.5 bits (114), Expect(2) = 4e-45
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVD TQHIA +TEP+ LCI L+IER RGY + T
Sbjct: 127 VEIVDTTQHIAILTEPVDLCIELKIERGRGYCMRT 161
[71][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 152 bits (383), Expect(2) = 5e-45
Identities = 72/94 (76%), Positives = 80/94 (85%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+D SY IDA+FMPV NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI
Sbjct: 164 NFEDRSYPIDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
+LFIPFLH EEE EN +H+VTLP F H+ L
Sbjct: 224 NLFIPFLHVEEETFYLENNQHQVTLPFFPFHNRL 257
Score = 53.1 bits (126), Expect(2) = 5e-45
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA +TEPI LCI L+IER+RGY + F
Sbjct: 127 VEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNF 165
[72][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 149 bits (376), Expect(2) = 8e-45
Identities = 72/93 (77%), Positives = 79/93 (84%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
F+D SY IDA+FMPV+NANHSIHSY NGN KQEILFLEIWTNGSLTPKEAL+EASRNLI+
Sbjct: 165 FEDRSYPIDAVFMPVQNANHSIHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLIN 224
Query: 109 LFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
LFIPFLH EEE EN +H VTLPLF H+ L
Sbjct: 225 LFIPFLHVEEETFYLENNQHHVTLPLFPFHNRL 257
Score = 55.1 bits (131), Expect(2) = 8e-45
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA +TE I LCIGL+IER+RGY + L F
Sbjct: 127 VEIIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTF 165
[73][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 140 bits (353), Expect(2) = 8e-45
Identities = 65/82 (79%), Positives = 73/82 (89%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KNFQDGSY IDA+FMPVRN NHSI+SY GN+K EILFLEIWTNGSLTPKEAL+EA+RNL
Sbjct: 163 KNFQDGSYPIDAVFMPVRNVNHSIYSYGTGNDKHEILFLEIWTNGSLTPKEALHEAARNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEH 50
IDLFIPFLH EEE L+ E+ +H
Sbjct: 223 IDLFIPFLHTEEENLDLEDNQH 244
Score = 63.9 bits (154), Expect(2) = 8e-45
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA++TEPI+LCIGLQIER+RGY I T K F
Sbjct: 127 VEIIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNF 165
[74][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 148 bits (373), Expect(2) = 1e-44
Identities = 73/96 (76%), Positives = 83/96 (86%), Gaps = 2/96 (2%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDGSY IDA+ MPVRNANHSIHSY +GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223
Query: 112 DLFIPFLHAEEE--KLNFENXEHKVTLPLFTCHDLL 11
DLFIPFLHAEE+ LN E+ +++ T+ FT HD L
Sbjct: 224 DLFIPFLHAEEQDIHLNLEDNQNRFTVSPFTLHDRL 259
Score = 55.8 bits (133), Expect(2) = 1e-44
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V IVD TQHIA++TEPI LCI LQIERDRGYR+
Sbjct: 127 VEIVDTTQHIASLTEPINLCIELQIERDRGYRM 159
[75][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 144 bits (362), Expect(2) = 1e-44
Identities = 73/97 (75%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Frame = -2
Query: 292 NFQDGSYNI--DAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 119
N QDGSY I +A+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EAS N
Sbjct: 164 NDQDGSYPIPIEAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHN 223
Query: 118 LIDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLA 8
LIDLFIPFLH EEE +N E+ ++ TLP FT D LA
Sbjct: 224 LIDLFIPFLHGEEEDINLEDSLNRGTLPFFTFQDKLA 260
Score = 59.7 bits (143), Expect(2) = 1e-44
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V +VD TQHIA++TEPI LCIGLQIERDRGYR+ T
Sbjct: 127 VKMVDTTQHIASLTEPIDLCIGLQIERDRGYRMKT 161
[76][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 149 bits (375), Expect(2) = 4e-44
Identities = 74/95 (77%), Positives = 79/95 (83%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEALYEASRNLID
Sbjct: 165 FQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEALYEASRNLID 222
Query: 109 LFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
L IPFLH +EE LN E +H V LP FT +D LAK
Sbjct: 223 LLIPFLHTKEENLNLEGNQHMVPLPPFTFYDKLAK 257
Score = 53.1 bits (126), Expect(2) = 4e-44
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+DNTQHIA++TEPI+L IGLQIE++RGY I F
Sbjct: 127 VEILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTF 165
[77][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 144 bits (363), Expect(2) = 9e-44
Identities = 69/89 (77%), Positives = 76/89 (85%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
DGSY ID + MPVRNANHSIHSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLIDL
Sbjct: 167 DGSYPIDIVSMPVRNANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLL 226
Query: 103 IPFLHAEEEKLNFENXEHKVTLPLFTCHD 17
IPFLHAEEE +NF+ E++ LP F+ D
Sbjct: 227 IPFLHAEEEDMNFKENENRWNLPPFSFQD 255
Score = 56.6 bits (135), Expect(2) = 9e-44
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVD TQHIAN+TEPI LCI LQI+RDRGYR+ +
Sbjct: 127 VEIVDTTQHIANLTEPINLCIELQIKRDRGYRMKS 161
[78][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 147 bits (370), Expect(2) = 9e-44
Identities = 72/95 (75%), Positives = 80/95 (84%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 109 LFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
L IPFLH +EE LN E+ +H + LP FT +D LAK
Sbjct: 223 LLIPFLHTKEENLNLEDNQHMIPLPPFTFYDKLAK 257
Score = 53.9 bits (128), Expect(2) = 9e-44
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA +TEPI+L IGLQIE++RGY I F
Sbjct: 127 VEIVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTF 165
[79][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 146 bits (369), Expect(2) = 9e-44
Identities = 73/95 (76%), Positives = 80/95 (84%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 109 LFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
L IPFLH +EE LN E+ +H V LP FT +D LAK
Sbjct: 223 LLIPFLHTKEENLNLEDNQHIVPLPPFTFYDKLAK 257
Score = 54.3 bits (129), Expect(2) = 9e-44
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI+L IGLQIE++RGY I F
Sbjct: 127 VEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTF 165
[80][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 142 bits (358), Expect(2) = 2e-43
Identities = 70/92 (76%), Positives = 74/92 (80%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N QDGSY IDA+FMPVRNANHSIHSY +GNEK EILFLEIWTNGSLTPKEAL+EA RNLI
Sbjct: 164 NSQDGSYPIDAVFMPVRNANHSIHSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHD 17
DLFIPFLH EEE E+ H V L T HD
Sbjct: 224 DLFIPFLHKEEETSPLEDNHHTVPLSPLTFHD 255
Score = 57.0 bits (136), Expect(2) = 2e-43
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGY 312
V IVDNTQHIA++TEPI LCIGLQIER+RGY
Sbjct: 127 VEIVDNTQHIASLTEPIDLCIGLQIERNRGY 157
[81][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 144 bits (364), Expect(2) = 3e-43
Identities = 72/95 (75%), Positives = 80/95 (84%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
FQDGSY ID +FMPVRNANHSIHSY NGN+ EILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 165 FQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGSLTPKEALHEASRNLID 222
Query: 109 LFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
L IPFLH +EE L+ E+ +H V LP FT +D LAK
Sbjct: 223 LLIPFLHTKEENLSLEDNQHIVPLPPFTFYDKLAK 257
Score = 54.3 bits (129), Expect(2) = 3e-43
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI+L IGLQIE++RGY I F
Sbjct: 127 VEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTF 165
[82][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 144 bits (362), Expect(2) = 4e-43
Identities = 71/96 (73%), Positives = 81/96 (84%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLI 221
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH E+E L E+ +H + L FT + +AK
Sbjct: 222 DLFIPFLHMEKENLPLEDADHTIPLSPFTVYYKVAK 257
Score = 54.7 bits (130), Expect(2) = 4e-43
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD+TQHIA +TEPI LCIGL+IER+RGY I T F
Sbjct: 127 VEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANF 165
[83][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 144 bits (362), Expect(2) = 4e-43
Identities = 71/96 (73%), Positives = 81/96 (84%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLI 221
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH E+E L E+ +H + L FT + +AK
Sbjct: 222 DLFIPFLHMEKENLPLEDADHTIPLSPFTVYYKVAK 257
Score = 54.7 bits (130), Expect(2) = 4e-43
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD+TQHIA +TEPI LCIGL+IER+RGY I T F
Sbjct: 127 VEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANF 165
[84][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 145 bits (366), Expect(2) = 2e-42
Identities = 71/96 (73%), Positives = 82/96 (85%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLI 221
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH E+E L+ E+ + + L FT +D +AK
Sbjct: 222 DLFIPFLHIEKENLHLEDADRTIPLSPFTVYDKVAK 257
Score = 51.2 bits (121), Expect(2) = 2e-42
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V +VD+TQHIA + EPI LCIGL+IER+RGY + T F
Sbjct: 127 VEVVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANF 165
[85][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 141 bits (356), Expect(2) = 3e-42
Identities = 70/90 (77%), Positives = 76/90 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI+S N NEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNSQDGSYPIDAVSMPVRNVNYSIYSCGNENEKYEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLFIPFLHAEEE NFE +++ TLPL T
Sbjct: 223 IDLFIPFLHAEEEDTNFEENKNRFTLPLLT 252
Score = 54.3 bits (129), Expect(2) = 3e-42
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD TQHIAN+TEPI LCI LQI+RDRGY K
Sbjct: 127 VEIVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRK 163
[86][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 148 bits (374), Expect(2) = 3e-42
Identities = 73/96 (76%), Positives = 83/96 (86%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
NF+DGSY IDA+FMPVRNANHSI+SY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NFEDGSYPIDALFMPVRNANHSINSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLI 221
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
DLFIPFLH EEE L+ E+ +H + L FT +D +AK
Sbjct: 222 DLFIPFLHMEEENLHLEDADHTIPLSPFTVYDKVAK 257
Score = 47.0 bits (110), Expect(2) = 3e-42
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD+TQHIA +TEPI IGL+IER+ GY I T F
Sbjct: 127 VEIVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANF 165
[87][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 145 bits (365), Expect(2) = 2e-41
Identities = 71/94 (75%), Positives = 79/94 (84%), Gaps = 2/94 (2%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDGSY IDA+ MPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKL--NFENXEHKVTLPLFTCHD 17
DLFIPFLHAEE+ + N E+ + ++P F D
Sbjct: 224 DLFIPFLHAEEQDINRNMEDNLKRASVPFFAFDD 257
Score = 48.1 bits (113), Expect(2) = 2e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD TQHIA +TEP+ LCI L+IER RGY T +
Sbjct: 127 VEIVDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNY 165
[88][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 142 bits (358), Expect(2) = 2e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 50.4 bits (119), Expect(2) = 2e-41
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ +K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNY 165
[89][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 142 bits (359), Expect(2) = 5e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVXMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 5e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[90][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 168 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 227
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 228 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 257
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD +Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 132 VEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNY 170
[91][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD +Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNY 165
[92][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[93][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[94][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[95][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[96][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[97][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[98][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[99][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[100][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[101][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[102][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGASFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[103][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[104][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[105][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGASFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[106][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[107][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 142 bits (358), Expect(2) = 6e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGASFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 6e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[108][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 135 bits (339), Expect(2) = 6e-41
Identities = 67/93 (72%), Positives = 75/93 (80%)
Frame = -2
Query: 286 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 107
QD SY IDA+ MPVRNAN+SI Y N NEKQEILFLEIWTNGSLTPKEALYEASRNLIDL
Sbjct: 164 QDASYPIDAVSMPVRNANYSIQCYGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 223
Query: 106 FIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLA 8
FIPFLHAEE L+ ++ ++ T P F H+ LA
Sbjct: 224 FIPFLHAEERDLHLDDDQNIFTAPFFPFHEGLA 256
Score = 56.2 bits (134), Expect(2) = 6e-41
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V IVD TQHIA++TEPI CIGL+IER+RGYR T
Sbjct: 127 VKIVDTTQHIASITEPINFCIGLEIERNRGYRTRT 161
[109][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 139 bits (350), Expect(2) = 6e-41
Identities = 70/93 (75%), Positives = 76/93 (81%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
FQD SY IDA+FMPVRN NHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLID
Sbjct: 150 FQDRSYPIDAVFMPVRNVNHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLID 207
Query: 109 LFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLL 11
LFIPFLH EEE L EN + V+ F+ H+ L
Sbjct: 208 LFIPFLHKEEENLPLENNQDTVSFSPFSFHEKL 240
Score = 52.0 bits (123), Expect(2) = 6e-41
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I DNTQHIA +TEPI CIGL+IER RGY I +
Sbjct: 112 VEIGDNTQHIARLTEPISFCIGLEIERSRGYLIKS 146
[110][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 142 bits (358), Expect(2) = 8e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.5 bits (114), Expect(2) = 8e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[111][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 142 bits (358), Expect(2) = 8e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.5 bits (114), Expect(2) = 8e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[112][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 142 bits (358), Expect(2) = 8e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.5 bits (114), Expect(2) = 8e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNY 165
[113][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 142 bits (357), Expect(2) = 8e-41
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNLNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 8e-41
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[114][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 142 bits (357), Expect(2) = 1e-40
Identities = 69/90 (76%), Positives = 76/90 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTGFEENKNRFTPPLFT 252
Score = 48.1 bits (113), Expect(2) = 1e-40
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V +VD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEVVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNY 165
[115][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 142 bits (358), Expect(2) = 2e-40
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 47.0 bits (110), Expect(2) = 2e-40
Identities = 22/39 (56%), Positives = 26/39 (66%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V VD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[116][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 142 bits (358), Expect(2) = 3e-40
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 46.6 bits (109), Expect(2) = 3e-40
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI L+I+RDRGY+ K +
Sbjct: 127 VEIVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNY 165
[117][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 142 bits (358), Expect(2) = 3e-40
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGASFEENKNRFTPPLFT 252
Score = 46.6 bits (109), Expect(2) = 3e-40
Identities = 22/39 (56%), Positives = 26/39 (66%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+ EPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNY 165
[118][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 140 bits (352), Expect(2) = 3e-40
Identities = 69/90 (76%), Positives = 76/90 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAESMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 3e-40
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[119][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 139 bits (351), Expect(2) = 4e-40
Identities = 68/90 (75%), Positives = 76/90 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T P FT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPPFT 252
Score = 48.9 bits (115), Expect(2) = 4e-40
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[120][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 139 bits (351), Expect(2) = 4e-40
Identities = 68/90 (75%), Positives = 76/90 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T P FT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPPFT 252
Score = 48.9 bits (115), Expect(2) = 4e-40
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[121][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 139 bits (349), Expect(2) = 7e-40
Identities = 68/90 (75%), Positives = 76/90 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ MPVRN N+SI S NG EK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMPVRNVNYSIFSCGNGIEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.9 bits (115), Expect(2) = 7e-40
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[122][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 139 bits (351), Expect(2) = 2e-39
Identities = 67/90 (74%), Positives = 76/90 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PF+H EEE +FE ++++T PL T
Sbjct: 223 IDLFLPFIHTEEEGTSFEENKNRLTPPLLT 252
Score = 46.6 bits (109), Expect(2) = 2e-39
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD TQ IAN+ EPI CI LQI+RDRGY K
Sbjct: 127 VEIVDTTQPIANLREPIDFCIELQIKRDRGYHTELRK 163
[123][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 137 bits (346), Expect(2) = 2e-39
Identities = 67/90 (74%), Positives = 75/90 (83%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY I + MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIXXVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PLFT
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
Score = 48.5 bits (114), Expect(2) = 2e-39
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[124][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 139 bits (351), Expect(2) = 3e-39
Identities = 67/90 (74%), Positives = 76/90 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PF+H EEE +FE ++++T PL T
Sbjct: 223 IDLFLPFIHTEEEGTSFEENKNRLTPPLLT 252
Score = 46.2 bits (108), Expect(2) = 3e-39
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD TQ IAN+ EP+ CI LQI+RDRGY K
Sbjct: 127 VEIVDTTQPIANLREPVDFCIELQIKRDRGYHTELRK 163
[125][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 137 bits (344), Expect(2) = 3e-39
Identities = 67/90 (74%), Positives = 75/90 (83%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDGSY IDA+ M VRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNYQDGSYPIDAVSMXVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PL T
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLLT 252
Score = 48.5 bits (114), Expect(2) = 3e-39
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD Q IAN+TEPI CI LQI+RDRGY+ K +
Sbjct: 127 VEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNY 165
[126][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 138 bits (347), Expect(2) = 4e-39
Identities = 68/90 (75%), Positives = 75/90 (83%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNSQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PL T
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLLT 252
Score = 47.0 bits (110), Expect(2) = 4e-39
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEPI CI LQI+RDRGY K
Sbjct: 127 VEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRK 163
[127][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 130 bits (327), Expect(2) = 4e-39
Identities = 62/95 (65%), Positives = 79/95 (83%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
FQ+ +Y++DA+FMPV N NHSI+SY GNEK+EILFLEIWTNGSLTPKEAL+EA++NL+D
Sbjct: 165 FQNETYSLDAVFMPVLNVNHSIYSY--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMD 222
Query: 109 LFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
LFIPFL EEE LN E+ EH++ FT +D ++K
Sbjct: 223 LFIPFLQMEEENLNLEDAEHQIPFSPFTFYDKVSK 257
Score = 54.7 bits (130), Expect(2) = 4e-39
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVD+TQHIA++TEPI LCIGL+IER+RGY I F
Sbjct: 127 VEIVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPF 165
[128][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 140 bits (353), Expect(2) = 7e-39
Identities = 68/90 (75%), Positives = 76/90 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE +FE ++++T PL T
Sbjct: 223 IDLFLPFLHTEEEGTSFEENKNRLTPPLLT 252
Score = 43.9 bits (102), Expect(2) = 7e-39
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD TQ IAN+ EP+ CI LQI+RDR Y K
Sbjct: 127 VEIVDTTQPIANLREPVDFCIELQIKRDRAYHTELRK 163
[129][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 139 bits (351), Expect(2) = 7e-39
Identities = 67/90 (74%), Positives = 76/90 (84%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PF+H EEE +FE ++++T PL T
Sbjct: 223 IDLFLPFIHTEEEGTSFEESKNRLTPPLLT 252
Score = 44.7 bits (104), Expect(2) = 7e-39
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+ EPI CI LQI+RDRGY K
Sbjct: 127 VEIVDTAQPIANLREPIDFCIELQIKRDRGYHTELRK 163
[130][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 135 bits (341), Expect(2) = 4e-38
Identities = 67/90 (74%), Positives = 74/90 (82%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI NGNEK EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNSQDGSYPIDAVSMPVRNVNYSIFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLHAEEE +FE +++ T PL T
Sbjct: 223 IDLFLPFLHAEEEGTSFEENKNRFTPPLLT 252
Score = 46.2 bits (108), Expect(2) = 4e-38
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEPI CI LQI+RDRGY K
Sbjct: 127 VEIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRK 163
[131][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 126 bits (317), Expect(2) = 7e-36
Identities = 63/96 (65%), Positives = 73/96 (76%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
+F DG Y IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+EA+R LI
Sbjct: 164 HFDDGIYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEAARILI 221
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
D FIPF H EEE L + EH + L ++ + K
Sbjct: 222 DFFIPFFHMEEENLYLADAEHTIPLSSLIFYNKVTK 257
Score = 47.8 bits (112), Expect(2) = 7e-36
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGY 312
V IVDNTQHIA +TEPI IGL+IER+RGY
Sbjct: 127 VQIVDNTQHIAWLTEPIDFFIGLKIERNRGY 157
[132][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 130 bits (328), Expect(2) = 1e-35
Identities = 62/96 (64%), Positives = 78/96 (81%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN+QDG + IDA+FMPVRNAN+SIHSY NGN+ QEILFLEIWTNGSL P+EALY ASRNL
Sbjct: 163 KNYQDGIFPIDAVFMPVRNANYSIHSYGNGNDIQEILFLEIWTNGSLAPREALYRASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLA 8
IDLFIPFL AEE+ ++ + ++ +P F+ ++ A
Sbjct: 223 IDLFIPFLRAEEQNIDGMDNQNGSNMPSFSFSNISA 258
Score = 42.7 bits (99), Expect(2) = 1e-35
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA++T+ I I L IE+DRGYRI + K +
Sbjct: 127 VRIIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNY 165
[133][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 125 bits (314), Expect(2) = 2e-35
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
+F DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+E++R LI
Sbjct: 164 HFDDGSYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILI 221
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLP 35
D FIPF EEE L + +H + LP
Sbjct: 222 DFFIPFFQMEEENLYLADAKHTIXLP 247
Score = 47.8 bits (112), Expect(2) = 2e-35
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGY 312
V IVDNTQHIA +TEPI IGL+IER+RGY
Sbjct: 127 VQIVDNTQHIAWLTEPIDFFIGLKIERNRGY 157
[134][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 125 bits (314), Expect(2) = 2e-35
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
+F DGSY IDA+FMPV+NANHSIHSY GNEKQEILFLEIWTNGSLTPKEAL+E++R LI
Sbjct: 164 HFDDGSYPIDALFMPVQNANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILI 221
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLP 35
D FIPF EEE L + +H + LP
Sbjct: 222 DFFIPFFQMEEENLYLADAKHTIPLP 247
Score = 47.8 bits (112), Expect(2) = 2e-35
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGY 312
V IVDNTQHIA +TEPI IGL+IER+RGY
Sbjct: 127 VQIVDNTQHIAWLTEPIDFFIGLKIERNRGY 157
[135][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 120 bits (301), Expect(2) = 4e-35
Identities = 63/93 (67%), Positives = 71/93 (76%), Gaps = 3/93 (3%)
Frame = -2
Query: 292 NFQDG-SYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
NF D Y IDA+F+PV+N NHSIHSY NG+ E+LFLEIWTNGSLTPKEAL EASR L
Sbjct: 166 NFHDDRGYPIDAVFLPVKNVNHSIHSYENGSH--EMLFLEIWTNGSLTPKEALREASRKL 223
Query: 115 IDLFIPFLHAEEEKLNFEN--XEHKVTLPLFTC 23
I+LFIPFLHAEEE +FEN EH LP+ C
Sbjct: 224 INLFIPFLHAEEENFHFENNQNEHTDELPIDLC 256
Score = 51.6 bits (122), Expect(2) = 4e-35
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = -1
Query: 398 IVDNTQHIANVTEPIQLCIGLQIERDRGY 312
IVDNTQHI +TEPI CIGLQI+R+RGY
Sbjct: 129 IVDNTQHIVTLTEPIDFCIGLQIDRNRGY 157
[136][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 126 bits (316), Expect(2) = 6e-35
Identities = 65/95 (68%), Positives = 75/95 (78%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
FQDGSY I A+ MPVR+ N+SIHS +GN KQEILFLEIWTNGSLTPKEAL+EA RNLID
Sbjct: 165 FQDGSYAIGAVLMPVRHMNYSIHS--SGNGKQEILFLEIWTNGSLTPKEALHEACRNLID 222
Query: 109 LFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
LFIPFLH EE N EN + ++ P FT +D L+K
Sbjct: 223 LFIPFLHKEEG--NLENNQDRIPFPSFTFYDKLSK 255
Score = 45.1 bits (105), Expect(2) = 6e-35
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V IVDNTQHIA++TEPI+L I LQIE++R ++ F
Sbjct: 127 VEIVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTF 165
[137][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 131 bits (330), Expect(2) = 8e-35
Identities = 64/90 (71%), Positives = 72/90 (80%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 143 KNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNL 202
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 203 IDLFLPFLHTEEEGTRFQENQNRFTSPLLS 232
Score = 39.3 bits (90), Expect(2) = 8e-35
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 107 VEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRK 143
[138][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 131 bits (329), Expect(2) = 1e-34
Identities = 64/90 (71%), Positives = 72/90 (80%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 143 KNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNL 202
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 203 IDLFLPFLHTEEEGTRFQENKNRFTSPLLS 232
Score = 39.3 bits (90), Expect(2) = 1e-34
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 107 VEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRK 143
[139][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 131 bits (329), Expect(2) = 1e-34
Identities = 64/90 (71%), Positives = 72/90 (80%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 143 KNAQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNL 202
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 203 IDLFLPFLHTEEEGTRFQENKNRFTSPLLS 232
Score = 39.3 bits (90), Expect(2) = 1e-34
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP+ I L+I+RDRGY K
Sbjct: 107 VEIVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRK 143
[140][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 131 bits (329), Expect(2) = 2e-34
Identities = 64/90 (71%), Positives = 72/90 (80%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI S NGN K EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 143 KNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNL 202
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 203 IDLFLPFLHTEEEGTRFQENKNRFTSPLLS 232
Score = 38.5 bits (88), Expect(2) = 2e-34
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 107 VEIVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRK 143
[141][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 130 bits (326), Expect(2) = 2e-34
Identities = 63/90 (70%), Positives = 72/90 (80%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 272 KNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNL 331
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 332 IDLFLPFLHTEEEGTRFQENKNRFTSPLLS 361
Score = 39.3 bits (90), Expect(2) = 2e-34
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 236 VEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRK 272
[142][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 130 bits (326), Expect(2) = 2e-34
Identities = 63/90 (70%), Positives = 72/90 (80%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 251 KNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNL 310
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 311 IDLFLPFLHTEEEGTRFQENKNRFTSPLLS 340
Score = 39.3 bits (90), Expect(2) = 2e-34
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 215 VEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRK 251
[143][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 130 bits (326), Expect(2) = 2e-34
Identities = 63/90 (70%), Positives = 72/90 (80%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 223 IDLFLPFLHTEEEGTRFQENKNRFTSPLLS 252
Score = 39.3 bits (90), Expect(2) = 2e-34
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 127 VEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRK 163
[144][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 130 bits (326), Expect(2) = 2e-34
Identities = 63/90 (70%), Positives = 72/90 (80%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 163 KNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 223 IDLFLPFLHTEEEGTRFQENKNRFTSPLLS 252
Score = 39.3 bits (90), Expect(2) = 2e-34
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 127 VEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRK 163
[145][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 130 bits (326), Expect(2) = 2e-34
Identities = 63/90 (70%), Positives = 72/90 (80%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 143 KNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNL 202
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 203 IDLFLPFLHTEEEGTRFQENKNRFTSPLLS 232
Score = 39.3 bits (90), Expect(2) = 2e-34
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 107 VEIVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRK 143
[146][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 129 bits (323), Expect(2) = 5e-34
Identities = 62/90 (68%), Positives = 72/90 (80%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI + NGN + EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 272 KNTQDGSYPIDAVSMPVRNVNYSIFACGNGNARYEILFLEIWTNGSLTPKEALYEASRNL 331
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 332 IDLFLPFLHTEEEGTRFQENKNRFTSPLLS 361
Score = 39.3 bits (90), Expect(2) = 5e-34
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 236 VEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRK 272
[147][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 115 bits (288), Expect(2) = 8e-34
Identities = 56/76 (73%), Positives = 65/76 (85%)
Frame = -2
Query: 274 YNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF 95
Y IDA+FMPV+N NHSIHSY NG+ E+LF EIWTNGSLTPKEAL EASR LI+LFIPF
Sbjct: 173 YPIDAVFMPVKNVNHSIHSYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPF 230
Query: 94 LHAEEEKLNFENXEHK 47
LHAEEEK +FEN +++
Sbjct: 231 LHAEEEKPHFENNQNE 246
Score = 52.0 bits (123), Expect(2) = 8e-34
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V IVDNTQHI +TEPI+ C+ LQIER+RGY +
Sbjct: 127 VSIVDNTQHIVTLTEPIEFCVALQIERNRGYSL 159
[148][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 127 bits (318), Expect(2) = 1e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 40.0 bits (92), Expect(2) = 1e-33
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA +T+ I I LQIE++RGY I++ +
Sbjct: 127 VKIIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNY 165
[149][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 127 bits (320), Expect(2) = 1e-33
Identities = 62/90 (68%), Positives = 71/90 (78%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTP EALYEASRNL
Sbjct: 143 KNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPMEALYEASRNL 202
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
IDLF+PFLH EEE F+ +++ T PL +
Sbjct: 203 IDLFLPFLHTEEEGTRFQENKNRFTSPLLS 232
Score = 39.3 bits (90), Expect(2) = 1e-33
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 107 VEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRK 143
[150][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 112 bits (281), Expect(2) = 1e-33
Identities = 55/81 (67%), Positives = 65/81 (80%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
D Y IDA+FMPV+N NHSIH+Y NG+ E+LF EIWTNGSLTPKEAL EASR LI+LF
Sbjct: 170 DRGYPIDAVFMPVKNVNHSIHAYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLF 227
Query: 103 IPFLHAEEEKLNFENXEHKVT 41
IPFLHAEEE + EN +++ T
Sbjct: 228 IPFLHAEEENSHLENNQNQHT 248
Score = 53.9 bits (128), Expect(2) = 1e-33
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGY 312
V IVDNTQHI +TEPI C+GLQIER+RGY
Sbjct: 127 VAIVDNTQHIVTLTEPIDFCVGLQIERNRGY 157
[151][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 129 bits (323), Expect(2) = 2e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N +P F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNRKGSNMPPFPLSHVLTDT 260
Score = 37.4 bits (85), Expect(2) = 2e-33
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I L+IE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIKLRIEKNRGYIIHS 161
[152][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 127 bits (318), Expect(2) = 2e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 39.3 bits (90), Expect(2) = 2e-33
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA +T+ I I LQIE++RGY I++ +
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[153][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 127 bits (318), Expect(2) = 2e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNKKKGSNMLPFPLSHVLTDT 260
Score = 39.3 bits (90), Expect(2) = 2e-33
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA +T+ I I LQIE++RGY I++ +
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[154][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 127 bits (318), Expect(2) = 2e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNKKKGSNMLPFPLSHVLTDT 260
Score = 39.3 bits (90), Expect(2) = 2e-33
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA +T+ I I LQIE++RGY I++ +
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[155][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 127 bits (318), Expect(2) = 2e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 39.3 bits (90), Expect(2) = 2e-33
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA +T+ I I LQIE++RGY I++ +
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[156][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 127 bits (318), Expect(2) = 2e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 39.3 bits (90), Expect(2) = 2e-33
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA +T+ I I LQIE++RGY I++ +
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[157][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 127 bits (318), Expect(2) = 2e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNKKKGSNMLPFPLSHVLTDT 260
Score = 39.3 bits (90), Expect(2) = 2e-33
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA +T+ I I LQIE++RGY I++ +
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[158][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 127 bits (318), Expect(2) = 2e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 39.3 bits (90), Expect(2) = 2e-33
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA +T+ I I LQIE++RGY I++ +
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[159][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 127 bits (318), Expect(2) = 2e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 39.3 bits (90), Expect(2) = 2e-33
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA +T+ I I LQIE++RGY I++ +
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[160][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 112 bits (280), Expect(2) = 2e-33
Identities = 58/89 (65%), Positives = 66/89 (74%), Gaps = 2/89 (2%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
D Y ID++FMPV+N NHSIHSY NG +LFLEIWTNGSLTPKEAL EASR L +LF
Sbjct: 170 DRGYPIDSVFMPVKNVNHSIHSYENGIHA--MLFLEIWTNGSLTPKEALREASRKLSNLF 227
Query: 103 IPFLHAEEEKLNFEN--XEHKVTLPLFTC 23
IPFLHAEE+ +FEN EH LP+ C
Sbjct: 228 IPFLHAEEQNFHFENNQNEHTDELPIDFC 256
Score = 53.5 bits (127), Expect(2) = 2e-33
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 398 IVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
IVDNTQHI +TEPI C+GLQIER+RGY I
Sbjct: 129 IVDNTQHIVTITEPIDFCVGLQIERNRGYFI 159
[161][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 126 bits (317), Expect(2) = 3e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F LL T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 38.9 bits (89), Expect(2) = 3e-33
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[162][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 126 bits (317), Expect(2) = 3e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F LL T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 38.9 bits (89), Expect(2) = 3e-33
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[163][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 126 bits (317), Expect(2) = 3e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F LL T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 38.9 bits (89), Expect(2) = 3e-33
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[164][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 126 bits (317), Expect(2) = 3e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F LL T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 38.9 bits (89), Expect(2) = 3e-33
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[165][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 126 bits (317), Expect(2) = 3e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F LL T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 38.9 bits (89), Expect(2) = 3e-33
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[166][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 126 bits (317), Expect(2) = 3e-33
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F LL T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHLLTDT 260
Score = 38.9 bits (89), Expect(2) = 3e-33
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[167][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 125 bits (314), Expect(2) = 5e-33
Identities = 60/97 (61%), Positives = 74/97 (76%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+ N+SIHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDVNYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 39.3 bits (90), Expect(2) = 5e-33
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V I+D TQHIA +T+ I I LQIE++RGY I++ +
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNY 165
[168][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 125 bits (314), Expect(2) = 7e-33
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 38.9 bits (89), Expect(2) = 7e-33
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[169][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 125 bits (314), Expect(2) = 7e-33
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 38.9 bits (89), Expect(2) = 7e-33
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[170][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 125 bits (314), Expect(2) = 7e-33
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 38.9 bits (89), Expect(2) = 7e-33
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[171][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 126 bits (317), Expect(2) = 9e-33
Identities = 60/97 (61%), Positives = 74/97 (76%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DL IPFLH EE+ ++ N +P F +L T
Sbjct: 224 DLLIPFLHGEEQNIDGMNNRKGSNMPPFPLSHVLTDT 260
Score = 37.4 bits (85), Expect(2) = 9e-33
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I L+IE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLRIEKNRGYIIHS 161
[172][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 110 bits (275), Expect(2) = 2e-32
Identities = 55/81 (67%), Positives = 64/81 (79%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
D Y IDA+FMPV+N NHSIHSY NG +LFLEIWTNGSLTPKEAL ASR LI+LF
Sbjct: 170 DRGYPIDAVFMPVKNVNHSIHSYENGIHA--MLFLEIWTNGSLTPKEALRGASRKLINLF 227
Query: 103 IPFLHAEEEKLNFENXEHKVT 41
IPFLHAEE+ +FEN +++ T
Sbjct: 228 IPFLHAEEQNCHFENNQNEHT 248
Score = 52.8 bits (125), Expect(2) = 2e-32
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 398 IVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
IVDNTQHI +TEPI C+GLQIER+RGY I
Sbjct: 129 IVDNTQHIVTLTEPIDFCVGLQIERNRGYFI 159
[173][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 124 bits (312), Expect(2) = 2e-32
Identities = 60/98 (61%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLN-FENXEHKVTLPLFTCHDLLAKT 2
D FIPFLH EE+ ++ N + +P F +L T
Sbjct: 224 DFFIPFLHGEEQNIDGINNRKGSSNMPPFPLLHVLTDT 261
Score = 38.1 bits (87), Expect(2) = 2e-32
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I L+IE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHS 161
[174][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 124 bits (310), Expect(2) = 2e-32
Identities = 59/97 (60%), Positives = 74/97 (76%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+ N+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDVNYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 38.9 bits (89), Expect(2) = 2e-32
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[175][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 125 bits (314), Expect(2) = 3e-32
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
DLFIPFLH EE+ ++ N + + F +L T
Sbjct: 224 DLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDT 260
Score = 37.0 bits (84), Expect(2) = 3e-32
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V +D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKTIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[176][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 122 bits (307), Expect(2) = 3e-32
Identities = 60/77 (77%), Positives = 64/77 (83%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN QDGSY IDA+ MPVRN N+SI + NGN K EILFLEIWTNGSLTPKEALYEASRNL
Sbjct: 272 KNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNL 331
Query: 115 IDLFIPFLHAEEEKLNF 65
IDLF+PFLH EEE F
Sbjct: 332 IDLFLPFLHTEEEGTRF 348
Score = 39.3 bits (90), Expect(2) = 3e-32
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLK 294
V IVD Q IAN+TEP I L+I+RDRGY K
Sbjct: 236 VEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRK 272
[177][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 123 bits (308), Expect(2) = 6e-32
Identities = 59/98 (60%), Positives = 74/98 (75%), Gaps = 1/98 (1%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLN-FENXEHKVTLPLFTCHDLLAKT 2
DL IPFLH EE+ ++ N + +P F + T
Sbjct: 224 DLLIPFLHGEEQNIDGMNNRKGSSNMPPFPLSHVFTDT 261
Score = 38.1 bits (87), Expect(2) = 6e-32
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I L+IE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHS 161
[178][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 118 bits (295), Expect(2) = 1e-31
Identities = 56/80 (70%), Positives = 69/80 (86%), Gaps = 1/80 (1%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
DG ++IDAIFMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLF
Sbjct: 167 DGYFSIDAIFMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLF 226
Query: 103 IPFLHAE-EEKLNFENXEHK 47
IPFLH E +E +N E+K
Sbjct: 227 IPFLHTEKKETINGLKTEYK 246
Score = 42.0 bits (97), Expect(2) = 1e-31
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V I+D TQ+IA +T+PI L I L+I++D GYRI
Sbjct: 127 VKIIDTTQYIATITKPIHLDIELEIDKDCGYRI 159
[179][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 119 bits (298), Expect(2) = 2e-31
Identities = 52/70 (74%), Positives = 66/70 (94%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
DG++ +DA+FMP+RN N+S+HS+ NGNE QEILFLEIWTNGS+TPKEALYEASR+LI+LF
Sbjct: 167 DGNFPVDAVFMPIRNVNYSVHSFENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLF 226
Query: 103 IPFLHAEEEK 74
IPFLHAE+++
Sbjct: 227 IPFLHAEKKE 236
Score = 40.0 bits (92), Expect(2) = 2e-31
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V I+D TQ+IA VT+ I L I L+IE+D GYRI
Sbjct: 127 VKIIDTTQYIATVTKAIHLDIELKIEKDFGYRI 159
[180][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 120 bits (301), Expect(2) = 2e-31
Identities = 58/97 (59%), Positives = 73/97 (75%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N+QDG + IDA+FMPVR+AN+SIHSY +GNE +E+LFLEIWTNG LTP+EAL EASR LI
Sbjct: 164 NYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALSEASRILI 223
Query: 112 DLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAKT 2
+LFIPFLH EE+ ++ N +P F +L T
Sbjct: 224 ELFIPFLHGEEQNIDGMNNRKGSNMPPFPLSHVLTDT 260
Score = 38.9 bits (89), Expect(2) = 2e-31
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA +T+ I I LQIE++RGY I++
Sbjct: 127 VKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHS 161
[181][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 108 bits (271), Expect(2) = 2e-31
Identities = 58/90 (64%), Positives = 68/90 (75%), Gaps = 3/90 (3%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
D +Y IDA+FMPVRN NHSIHSY G+ E+LFLEIWTNGSLTPKEAL EASR LI+L
Sbjct: 171 DSAYPIDAVFMPVRNVNHSIHSYERGSH--EMLFLEIWTNGSLTPKEALREASRKLINLL 228
Query: 103 IPFLHAEEEKLNF-ENXEHKVT--LPLFTC 23
+PFLHAEEE EN +++ T LP+ C
Sbjct: 229 MPFLHAEEENFYLVENNQNQDTEELPIDLC 258
Score = 50.4 bits (119), Expect(2) = 2e-31
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = -1
Query: 398 IVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
IVDNTQHI +TEPI C+GL+IER RGY I
Sbjct: 129 IVDNTQHIFTLTEPIDFCVGLKIERGRGYSI 159
[182][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 115 bits (288), Expect(2) = 4e-31
Identities = 52/70 (74%), Positives = 64/70 (91%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
DG + IDAIFMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLF
Sbjct: 167 DGYFPIDAIFMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLF 226
Query: 103 IPFLHAEEEK 74
IPFLH E+++
Sbjct: 227 IPFLHPEKKE 236
Score = 43.1 bits (100), Expect(2) = 4e-31
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V I+D TQ+IA +T+PI L I L+IE+D GYRI
Sbjct: 127 VKIIDTTQYIATITKPIHLDIELEIEKDCGYRI 159
[183][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 108 bits (271), Expect(2) = 1e-30
Identities = 57/85 (67%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH 89
IDA+FMPVRN NHSI+SY G+ +EILFLEIWTNGSLTPKEAL EASR LI+LFIPFLH
Sbjct: 178 IDAVFMPVRNVNHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLH 235
Query: 88 AEEEK---LNFENXEHKVTLPLFTC 23
AEEE L +H LP+ +C
Sbjct: 236 AEEENFYLLENNQNQHTEELPIDSC 260
Score = 48.1 bits (113), Expect(2) = 1e-30
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = -1
Query: 398 IVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
IVDNTQHI +TEPI C+ L+IER RGY I
Sbjct: 129 IVDNTQHIVTLTEPIDFCVELKIERGRGYSI 159
[184][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 117 bits (293), Expect(2) = 1e-30
Identities = 57/94 (60%), Positives = 73/94 (77%), Gaps = 2/94 (2%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
DG + IDAIFMP+RNAN+S+HS+ + N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLF
Sbjct: 167 DGHFPIDAIFMPIRNANYSVHSFEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLF 226
Query: 103 IPFLHAEEEKL--NFENXEHKVTLPLFTCHDLLA 8
IPFLHAE++++ EN + F+ LA
Sbjct: 227 IPFLHAEKKEIINGLENKYESNNMSYFSSFSPLA 260
Score = 39.3 bits (90), Expect(2) = 1e-30
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V I+D TQ+IA +T+ I L I L+IE+D GYRI
Sbjct: 127 VKIIDTTQYIATLTKTIHLDIELEIEKDCGYRI 159
[185][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 119 bits (299), Expect(2) = 1e-30
Identities = 53/77 (68%), Positives = 68/77 (88%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
DG +++DA+F P+RNAN+S+HS+ N NE QEILF+EIWTNGS+TPKEALYEASR+LIDLF
Sbjct: 170 DGYFSVDAVFTPIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLF 229
Query: 103 IPFLHAEEEKLNFENXE 53
IPFLHAE+E++ + E
Sbjct: 230 IPFLHAEKEEVMHDKNE 246
Score = 37.0 bits (84), Expect(2) = 1e-30
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V ++D TQ+IA +T+ I L I L+IE+D GYR
Sbjct: 130 VEVIDTTQYIATLTKAIHLDIELKIEKDCGYR 161
[186][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 115 bits (287), Expect(2) = 2e-30
Identities = 53/81 (65%), Positives = 66/81 (81%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
K Q G + IDA+FMP+R AN+S+HS+ N + QEILF+EIWT+GSLTPKEALYEASRNL
Sbjct: 163 KESQAGEFFIDAVFMPIRKANYSVHSFGNNKKFQEILFIEIWTDGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNFENXE 53
IDLF+PFLH EEE++ + E
Sbjct: 223 IDLFLPFLHTEEEEIISDRDE 243
Score = 41.2 bits (95), Expect(2) = 2e-30
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKK 291
V +D++QHIA +T+ I L I ++I++DRGYRI K+
Sbjct: 127 VQAIDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKE 164
[187][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 118 bits (296), Expect(2) = 3e-30
Identities = 52/71 (73%), Positives = 66/71 (92%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
DG +++DA+F P+RNAN+S+HS+ N NE QEILF+EIWTNGS+TPKEALYEASR+LIDLF
Sbjct: 170 DGYFSVDAVFTPIRNANYSVHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLF 229
Query: 103 IPFLHAEEEKL 71
IPFLHAE+E++
Sbjct: 230 IPFLHAEKEEV 240
Score = 37.0 bits (84), Expect(2) = 3e-30
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V ++D TQ+IA +T+ I L I L+IE+D GYR
Sbjct: 130 VEVIDTTQYIATLTKAIHLDIELKIEKDCGYR 161
[188][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 117 bits (292), Expect(2) = 5e-30
Identities = 55/75 (73%), Positives = 64/75 (85%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
N +DG ++ DA+ MPVRNAN+SIHSY NGNE QEILF EIWTNGSL P EALYEASRNLI
Sbjct: 164 NSRDGIFSTDAVSMPVRNANYSIHSYGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLI 223
Query: 112 DLFIPFLHAEEEKLN 68
DLFIPF+ AEE+ ++
Sbjct: 224 DLFIPFMRAEEQNID 238
Score = 37.7 bits (86), Expect(2) = 5e-30
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINT 300
V I+D TQHIA++ E I I QI +DRGYRI +
Sbjct: 127 VRIIDTTQHIASLKESITSDIRSQIGKDRGYRIQS 161
[189][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 111 bits (278), Expect(2) = 3e-29
Identities = 53/77 (68%), Positives = 67/77 (87%), Gaps = 1/77 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH 89
IDAIFMP+RNAN+S+HS+ N N+ QE+LF+EIWTNGS+TPK+ALYEASR+LIDLFIPFLH
Sbjct: 172 IDAIFMPIRNANYSVHSFENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLH 231
Query: 88 AE-EEKLNFENXEHKVT 41
AE E +N E+K++
Sbjct: 232 AERREIINELENEYKLS 248
Score = 40.4 bits (93), Expect(2) = 3e-29
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKK 291
V I+D Q+IA +T+ IQL I L+IE+D GYRI K
Sbjct: 127 VKIIDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNK 164
[190][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 110 bits (275), Expect(2) = 2e-27
Identities = 48/77 (62%), Positives = 68/77 (88%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
+ +Q+G + +DA+FMP+RNAN+S+HS+ + + +EILFLEIWT+GSLTPKEALYEASRNL
Sbjct: 163 QKYQEGLFPVDAVFMPIRNANYSVHSFESEKKIKEILFLEIWTDGSLTPKEALYEASRNL 222
Query: 115 IDLFIPFLHAEEEKLNF 65
IDLFIP +++E+++ NF
Sbjct: 223 IDLFIPLINSEKKEKNF 239
Score = 35.8 bits (81), Expect(2) = 2e-27
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -1
Query: 383 QHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
Q+IA + + I L I L IE+DRGYRI L+K+
Sbjct: 134 QYIATLNKDILLEIELNIEKDRGYRIENLQKY 165
[191][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 104 bits (259), Expect(2) = 2e-27
Identities = 50/72 (69%), Positives = 58/72 (80%)
Frame = -2
Query: 274 YNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF 95
+ IDA F PV+N N+SIHSY + NE QEILFLEIWTNG L PKEALYEASRNLID F+PF
Sbjct: 180 FPIDAAFAPVQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPF 239
Query: 94 LHAEEEKLNFEN 59
L+A+EE + N
Sbjct: 240 LNAKEENSDGTN 251
Score = 41.6 bits (96), Expect(2) = 2e-27
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKFS 285
V I+D TQHIAN+ + I L I LQIE+ RGY I ++
Sbjct: 127 VRIIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYN 166
[192][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 106 bits (264), Expect(2) = 2e-27
Identities = 46/74 (62%), Positives = 64/74 (86%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
++DG++ ++A F P+RNAN+S+HS+ N EKQEILF+E+WTNGSLTPKEAL EAS++LI+
Sbjct: 165 YEDGNFAVNAAFTPIRNANYSVHSFENEKEKQEILFIEVWTNGSLTPKEALREASQSLIN 224
Query: 109 LFIPFLHAEEEKLN 68
LFIP LH ++E+ N
Sbjct: 225 LFIPLLHEKKEREN 238
Score = 39.7 bits (91), Expect(2) = 2e-27
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V ++D TQHIA +T+ + I L I +DRGYRI K+
Sbjct: 127 VEVIDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKY 165
[193][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 100 bits (249), Expect(2) = 6e-27
Identities = 45/76 (59%), Positives = 63/76 (82%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
+ +++G + IDA+FMP+RNAN+S+HS+ + + +EIL LEIWTNGSLTP++ALYEASRNL
Sbjct: 164 RKYREGFFPIDAVFMPIRNANYSVHSFGSREKTKEILLLEIWTNGSLTPEKALYEASRNL 223
Query: 115 IDLFIPFLHAEEEKLN 68
IDLFIP ++ E+ N
Sbjct: 224 IDLFIPSMNPGGEEKN 239
Score = 43.9 bits (102), Expect(2) = 6e-27
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = -1
Query: 398 IVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
++DNTQ++A +T I L I L IE+DRGYR+ +K+
Sbjct: 130 VIDNTQYVATITGKISLDIELDIEKDRGYRMENSRKY 166
[194][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 98.6 bits (244), Expect(2) = 3e-25
Identities = 44/89 (49%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
++DG + +DA+FMPVRN N+S+H + +G E +EILF+E+WTNGSLTP EA+ +AS++ ID
Sbjct: 165 YRDGEFPVDAVFMPVRNVNYSVHPFGSGKEMREILFIEVWTNGSLTPTEAISKASKSSID 224
Query: 109 LFIPFLHAEEEKL-NFENXEHKVTLPLFT 26
L PFLH + E + +FE+ +L F+
Sbjct: 225 LLSPFLHTKHEDIPDFESNRDSSSLMKFS 253
Score = 40.0 bits (92), Expect(2) = 3e-25
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V ++D++Q+I +T+PI + I L IE D GYRI +L ++
Sbjct: 127 VKVIDDSQYIVTITQPISVNIELNIECDCGYRIESLNEY 165
[195][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 98.6 bits (244), Expect(2) = 3e-25
Identities = 47/74 (63%), Positives = 60/74 (81%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
K Q G + IDA+F P+RNAN+SIHS+ + N+ +EILFLE+WTNGSLTP AL EASR+L
Sbjct: 163 KESQSGEFFIDALFTPIRNANYSIHSFESNNKVREILFLEVWTNGSLTPGAALSEASRDL 222
Query: 115 IDLFIPFLHAEEEK 74
IDLFI FL+ E+E+
Sbjct: 223 IDLFIIFLNMEKEE 236
Score = 40.0 bits (92), Expect(2) = 3e-25
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKK 291
V I+D +QHIA +T I L + L+IERD GYR LK+
Sbjct: 127 VKIIDASQHIATITTAIPLDVELRIERDCGYRTLNLKE 164
[196][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 89.4 bits (220), Expect(2) = 3e-24
Identities = 45/82 (54%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = -2
Query: 280 GSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFI 101
G + IDA+FMPVRN N+SIH + +G QEILF+EIWTNGSLTP EAL +AS L+DL
Sbjct: 169 GQFPIDAVFMPVRNVNYSIHLFGSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLT 228
Query: 100 PFLHAEEEKLN-FENXEHKVTL 38
FL+ ++ FEN E + L
Sbjct: 229 TFLYVRGGDVSLFENGEDSLDL 250
Score = 46.2 bits (108), Expect(2) = 3e-24
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKK 291
V +DN+Q+IA +T+PI L I L+IE+D GYRI L K
Sbjct: 128 VEAIDNSQYIATITQPISLTIELEIEKDCGYRIENLAK 165
[197][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 98.2 bits (243), Expect(2) = 4e-24
Identities = 46/89 (51%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID 110
++DG + +DA+ MPVRN N+S+H + +G E +EI F+EIWTNGS TP EAL EAS+NLID
Sbjct: 165 YRDGEFPVDAVPMPVRNVNYSVHPFGSGREMREISFIEIWTNGSPTPNEALCEASKNLID 224
Query: 109 LFIPFLHAEEEKL-NFENXEHKVTLPLFT 26
L IPFLH + E + +FE+ + L + +
Sbjct: 225 LLIPFLHMKHEDVPHFEDEQDSSDLTILS 253
Score = 37.0 bits (84), Expect(2) = 4e-24
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V I+D++Q+I +T+PI + I +IE+D GYRI
Sbjct: 127 VKIIDDSQYIVTITQPISVNIESRIEKDCGYRI 159
[198][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 100 bits (248), Expect(2) = 2e-23
Identities = 49/81 (60%), Positives = 66/81 (81%), Gaps = 2/81 (2%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDL 107
DG + ID++FMPVRNAN+S+HSY + + QEILFLEIWTNGS+TP+EAL+EA+R LIDL
Sbjct: 279 DGRFYIDSVFMPVRNANYSVHSYESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDL 338
Query: 106 FIPFLHAEEEKL-NFENXEHK 47
F+PFLH +++++ N HK
Sbjct: 339 FLPFLHPKKKEVTNSATKMHK 359
Score = 32.3 bits (72), Expect(2) = 2e-23
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -1
Query: 398 IVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
+ D TQHIA +T+ + L I L +E+ GYR+
Sbjct: 241 VTDPTQHIAYLTKEVSLDIELDVEKGCGYRM 271
[199][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 91.7 bits (226), Expect(2) = 1e-22
Identities = 39/81 (48%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVNGNEK--QEILFLEIWTNGSLTPKEALYEASRNL 116
++DG++ +DA+F P+R+ N+SIH + + ++ +E+L EIW+NGS+TP+EA+YEASR+
Sbjct: 168 YKDGNFTVDAVFTPIRSVNYSIHCFESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSS 227
Query: 115 IDLFIPFLHAEEEKLNFENXE 53
I+LF+PFL AE+EK +F+ +
Sbjct: 228 INLFLPFLQAEKEKEDFKGED 248
Score = 38.1 bits (87), Expect(2) = 1e-22
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKF 288
V ++D QHIA +T+ ++L I L+IE+D GYR + ++
Sbjct: 130 VEVIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEY 168
[200][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 90.5 bits (223), Expect(2) = 2e-21
Identities = 47/97 (48%), Positives = 60/97 (61%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
+ ++G + IDA MPVRN N SIHSY + N+ +E+L EIWTNG LTP+EA YEA L
Sbjct: 166 RRHKNGLFPIDAPCMPVRNVNFSIHSYKSENDIREMLIFEIWTNGGLTPREAFYEACWKL 225
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTLPLFTCHDLLAK 5
IDL +P LH EE+ + LP+ T D L K
Sbjct: 226 IDLIVPLLHMEED---MNGAKDFFALPILTRMDKLGK 259
Score = 35.8 bits (81), Expect(2) = 2e-21
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
+ I+D TQHIA++T+ + + L IER++GY I
Sbjct: 128 IKIIDGTQHIASLTKSVPFNVMLTIERNQGYAI 160
[201][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 102 bits (255), Expect = 1e-20
Identities = 45/61 (73%), Positives = 56/61 (91%)
Frame = -2
Query: 256 FMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 77
FMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+L DLFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
Query: 76 K 74
+
Sbjct: 61 E 61
[202][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 88.6 bits (218), Expect(2) = 2e-19
Identities = 40/56 (71%), Positives = 48/56 (85%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS 125
NFQDGSY ID +FM V+NANH+IH Y N NE+QEILFL++WTN +LTPKEA +EAS
Sbjct: 93 NFQDGSYPIDTVFMSVQNANHNIHFYGNVNERQEILFLKLWTNKNLTPKEAFHEAS 148
Score = 30.4 bits (67), Expect(2) = 2e-19
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 377 IANVTEPIQLCIGLQIERDRGYRINTLKKF 288
IA + +PI LCIGLQI+R+ Y + F
Sbjct: 65 IARLKKPIDLCIGLQIKRNCKYSMKRPNNF 94
[203][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 79.0 bits (193), Expect(2) = 4e-18
Identities = 38/86 (44%), Positives = 55/86 (63%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
K +D + ID + +PV+N N SIHSY + + QE+L EIWTNG LTP+E +YEA +L
Sbjct: 164 KQPKDIFFPIDGVSLPVQNVNFSIHSYKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSL 223
Query: 115 IDLFIPFLHAEEEKLNFENXEHKVTL 38
+DL IP L E+ N + + ++L
Sbjct: 224 LDLIIPLLCVEQNIKNSQKKPNPLSL 249
Score = 35.8 bits (81), Expect(2) = 4e-18
Identities = 15/38 (39%), Positives = 27/38 (71%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKK 291
+ I+D+TQHIA++T+ I + L+IE+ + Y I +K+
Sbjct: 128 IQIIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQ 165
[204][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 79.0 bits (193), Expect(2) = 9e-18
Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 7/82 (8%)
Frame = -2
Query: 277 SYNIDAIFMPVRNANHSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFI 101
S++IDAIFMP+RN N+SIH G+ K E+L LEIWTNGS+TPKEA ++AS ++++F+
Sbjct: 166 SFSIDAIFMPIRNVNYSIHPVEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFL 225
Query: 100 PFLHAEEEKL------NFENXE 53
++ + ++ NFE E
Sbjct: 226 SLSNSSDNQIQEKSTKNFEEKE 247
Score = 34.7 bits (78), Expect(2) = 9e-18
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKFSR 282
+ I+D+ Q IA++TEPI + L IE+ G+R+ + S+
Sbjct: 124 IEILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISK 164
[205][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 80.5 bits (197), Expect(2) = 3e-17
Identities = 37/67 (55%), Positives = 54/67 (80%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
+G + ID++FMPV AN+S+HS+ + +EILFLEI+TNGS++P+EAL EA+R+LIDL
Sbjct: 355 NGRFYIDSVFMPVVQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLL 414
Query: 103 IPFLHAE 83
+P L +E
Sbjct: 415 LPLLESE 421
Score = 31.2 bits (69), Expect(2) = 3e-17
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
+V+ D +Q+IA VT I + +++E+D GYRI
Sbjct: 315 LVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRI 347
[206][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 80.5 bits (197), Expect(2) = 3e-17
Identities = 37/67 (55%), Positives = 54/67 (80%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
+G + ID++FMPV AN+S+HS+ + +EILFLEI+TNGS++P+EAL EA+R+LIDL
Sbjct: 268 NGRFYIDSVFMPVVQANYSVHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLL 327
Query: 103 IPFLHAE 83
+P L +E
Sbjct: 328 LPLLESE 334
Score = 31.2 bits (69), Expect(2) = 3e-17
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
+V+ D +Q+IA VT I + +++E+D GYRI
Sbjct: 228 LVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRI 260
[207][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 73.6 bits (179), Expect(2) = 2e-16
Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYVN--GNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
+Q GS DA+FMP+R+AN+SIH + G +E+L LE T+GS TP+EA+YEASRNL
Sbjct: 166 YQKGSLPPDAVFMPIRHANYSIHRLGSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNL 225
Query: 115 IDLFIPFLH 89
+LF PF H
Sbjct: 226 ANLFSPFPH 234
Score = 35.8 bits (81), Expect(2) = 2e-16
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -1
Query: 395 VDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKFSRWKL 273
+D TQHIA +T I IGL++ER G+R + ++ + L
Sbjct: 131 MDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSL 171
[208][TOP]
>UniRef100_C5Z5P0 Putative uncharacterized protein Sb10g023655 (Fragment) n=1
Tax=Sorghum bicolor RepID=C5Z5P0_SORBI
Length = 66
Score = 84.7 bits (208), Expect = 3e-15
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = -2
Query: 184 FLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENXEHKVTLPLFT 26
FLEIWTNGSLTPKEALYE SRNLIDLF+PF+H EEE NFE ++++T P T
Sbjct: 7 FLEIWTNGSLTPKEALYETSRNLIDLFLPFIHTEEEGTNFEENKNRLTPPFLT 59
[209][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 75.9 bits (185), Expect(2) = 4e-15
Identities = 37/70 (52%), Positives = 49/70 (70%)
Frame = -2
Query: 286 QDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 107
QDG + +DA+F PVRN N SIH+ E+QE L LEIWTNG++TP +AL + S NLI L
Sbjct: 168 QDGYFPVDALFNPVRNVNFSIHNLA---EQQEALILEIWTNGAITPLDALRQGSENLIHL 224
Query: 106 FIPFLHAEEE 77
F+P E++
Sbjct: 225 FLPPFGLEDD 234
Score = 28.9 bits (63), Expect(2) = 4e-15
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
+ I + HIA +T+PI+ + L I + RGY I
Sbjct: 129 ITISNPYHHIATITKPIRFQVELIINKGRGYLI 161
[210][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 77.4 bits (189), Expect(2) = 4e-15
Identities = 32/74 (43%), Positives = 53/74 (71%)
Frame = -2
Query: 292 NFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLI 113
+ + G + +D +F+P+R+ N+SIHS+ + +E L +E+WTNGS+ PKEA+ EAS NL+
Sbjct: 164 SIKQGFFLVDPVFIPIRSVNYSIHSFEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLV 223
Query: 112 DLFIPFLHAEEEKL 71
+LF P + E ++L
Sbjct: 224 NLFTPLVSQEYQQL 237
Score = 27.3 bits (59), Expect(2) = 4e-15
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
+ IV+ Q+IA V +PI + + I++ +GY +
Sbjct: 127 IKIVNPDQYIATVNKPINFNLQIYIQKGKGYSL 159
[211][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 76.6 bits (187), Expect(2) = 2e-14
Identities = 36/66 (54%), Positives = 47/66 (71%)
Frame = -2
Query: 280 GSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFI 101
G + +DA PVRN N+SIHS G+ +QE+L LE+WTNGSLTP+E + +AS+NL DL
Sbjct: 165 GRFILDAALKPVRNMNYSIHSLGEGDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLK 224
Query: 100 PFLHAE 83
P L E
Sbjct: 225 PLLKVE 230
Score = 25.4 bits (54), Expect(2) = 2e-14
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDR 318
V +VDNTQ+IA + P + I + +E +
Sbjct: 124 VQVVDNTQYIARLEMPTSIEIHITLENTK 152
[212][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 61.6 bits (148), Expect(2) = 1e-13
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = -2
Query: 265 DAIFMPVRNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 92
+ +MPVR+ ++++ Y + + +IL E+WTNG LTPKEALYEA LIDL IP L
Sbjct: 180 EIFYMPVRSVTYNVYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLL 239
Query: 91 HAEEEKLNFENXEHKVTLPL 32
+ L+ E K ++PL
Sbjct: 240 --DVPLLHVEGSGVKESIPL 257
Score = 37.7 bits (86), Expect(2) = 1e-13
Identities = 16/42 (38%), Positives = 29/42 (69%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKFSRW 279
+ IVD TQHIA++T+PI L + L+IE++ G ++ +++
Sbjct: 131 IQIVDGTQHIASITKPIHLHVTLKIEKNWGETTESIHPITKY 172
[213][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 66.2 bits (160), Expect(2) = 2e-12
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 92
IDAIFMPVR N+ + ++ +E +E L LEIW NGS+TP++++ +A+ L++LF PF
Sbjct: 165 IDAIFMPVRKVNYMVEEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPF- 223
Query: 91 HAEEEKLNFENXE 53
+K+NFEN +
Sbjct: 224 ----KKINFENTD 232
Score = 29.3 bits (64), Expect(2) = 2e-12
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V I+ TQ++A V E L + +IE+ RGY+I
Sbjct: 118 VEIIHGTQYVATVAENAILEMEFKIEKGRGYKI 150
[214][TOP]
>UniRef100_B9IJB3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IJB3_POPTR
Length = 73
Score = 65.5 bits (158), Expect(2) = 2e-12
Identities = 28/36 (77%), Positives = 33/36 (91%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEI 188
KNFQDGSY+IDAIFM VRNANH++HSY NGNEK ++
Sbjct: 33 KNFQDGSYSIDAIFMHVRNANHNVHSYGNGNEKSQL 68
Score = 30.0 bits (66), Expect(2) = 2e-12
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 362 EPIQLCIGLQIERDRGYRINTLKKF 288
EPI L IGL+IER+ GY + K F
Sbjct: 11 EPIDLHIGLEIERNHGYCMKPPKNF 35
[215][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 67.0 bits (162), Expect(2) = 1e-11
Identities = 31/58 (53%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
IDA+FMPVR N+++ + V G+ +++ L L+IWTNGSLTP+EAL +A+ L+DLF+P
Sbjct: 166 IDAVFMPVRKVNYTVEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVP 223
Score = 26.2 bits (56), Expect(2) = 1e-11
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V +VD Q+IA ++ L + Q+E+ GYR
Sbjct: 118 VEVVDKNQYIATLSPGSTLEMEFQVEKGTGYR 149
[216][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 62.8 bits (151), Expect(2) = 3e-11
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF- 95
ID+IFMPV N+S+ + + ++ L LEIWTNGS+ PKEAL +A+ L++LF P
Sbjct: 166 IDSIFMPVTKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLK 225
Query: 94 -LHAEEEKLNFENXE 53
L+A E NF++ E
Sbjct: 226 DLNALESSSNFDDQE 240
Score = 28.9 bits (63), Expect(2) = 3e-11
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V IVD Q++A + E +L + ++E+ +GYR
Sbjct: 118 VEIVDRNQYVATLAEGAKLEMEFRVEKGKGYR 149
[217][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 60.5 bits (145), Expect(2) = 5e-11
Identities = 29/58 (50%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
ID+IFMPVR N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 166 IDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
Score = 30.4 bits (67), Expect(2) = 5e-11
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V ++D TQ++A + E +L + +IER +GYR
Sbjct: 118 VEVIDPTQYVATIAEGGKLEMEFRIERGKGYR 149
[218][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 60.5 bits (145), Expect(2) = 5e-11
Identities = 29/58 (50%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
ID+IFMPVR N+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 166 IDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
Score = 30.4 bits (67), Expect(2) = 5e-11
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V ++D TQ++A + E +L + +IER +GYR
Sbjct: 118 VEVIDPTQYVATIAEGGKLEMEFRIERGKGYR 149
[219][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 62.4 bits (150), Expect(2) = 5e-11
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 92
ID++FMPV N+S+ V+G ++ L +EIWTNGS+ PKEAL EA+ ++DLF P
Sbjct: 166 IDSVFMPVTKVNYSVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLR 225
Query: 91 HAEE 80
E
Sbjct: 226 DLNE 229
Score = 28.5 bits (62), Expect(2) = 5e-11
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V IVD +Q++A + E +L + +IE+ +GYR
Sbjct: 118 VEIVDPSQYVATLAEGSKLEMEFRIEKGKGYR 149
[220][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 62.0 bits (149), Expect(2) = 5e-11
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF- 95
ID+IFMPV N+S+ + + ++ L LEIWTNGS+ PKEAL +A+ L++LF P
Sbjct: 166 IDSIFMPVTKVNYSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLK 225
Query: 94 -LHAEEEKLNFENXE 53
L+A E NF++ E
Sbjct: 226 DLNALESSGNFDDQE 240
Score = 28.9 bits (63), Expect(2) = 5e-11
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V IVD Q++A + E +L + ++E+ +GYR
Sbjct: 118 VEIVDRNQYVATLAEGAKLEMEFRVEKGKGYR 149
[221][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 60.5 bits (145), Expect(2) = 1e-10
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
ID++FMPVR N+S+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 166 IDSVFMPVRKVNYSVEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 222
Score = 29.3 bits (64), Expect(2) = 1e-10
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V ++D TQ++A + + +L + +IER +GYR
Sbjct: 118 VEVIDPTQYVATIADGGKLEMEFRIERGKGYR 149
[222][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 62.8 bits (151), Expect(2) = 1e-10
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 92
ID++FMPV N+S+ V+G ++ L LEIWTNGS+ PKEAL EA+ ++DLF P
Sbjct: 166 IDSVFMPVTKVNYSVEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLK 225
Query: 91 HAEE 80
E
Sbjct: 226 DLNE 229
Score = 26.6 bits (57), Expect(2) = 1e-10
Identities = 9/32 (28%), Positives = 23/32 (71%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
+ +VD +Q++A +++ +L + ++E+ +GYR
Sbjct: 118 IEVVDPSQYVATLSDGSKLEMEFRVEKGKGYR 149
[223][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 59.7 bits (143), Expect(2) = 4e-10
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGN--EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
IDA+FMPV N+ + + G E Q+ L LEIWTNGS PKEAL EA+ ++DLF P
Sbjct: 168 IDAVFMPVTKVNYIVED-IRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
Score = 28.1 bits (61), Expect(2) = 4e-10
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V +VD TQ++A +TE +L + +IE GY+
Sbjct: 120 VEVVDPTQYVATLTEGSKLEMEFRIETGTGYK 151
[224][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 58.5 bits (140), Expect(2) = 4e-10
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
ID+IFMPVR N+S+ S G ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 166 IDSIFMPVRKVNYSVEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
Score = 29.3 bits (64), Expect(2) = 4e-10
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V ++D TQ++A + E +L + +IE+ +GYR
Sbjct: 118 VEVIDPTQYVATIAEGGKLEMEFRIEKGKGYR 149
[225][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 60.8 bits (146), Expect(2) = 5e-10
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 92
+DA+FMPV N+S+ + V+G+ +++ L L++WTNGS++P+EAL +A+ L+DLF P
Sbjct: 166 LDAVFMPVTKVNYSVEDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLK 225
Query: 91 HAE 83
E
Sbjct: 226 DIE 228
Score = 26.6 bits (57), Expect(2) = 5e-10
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V VD Q+IA + + +L + +IER +GYR
Sbjct: 118 VEFVDPGQYIATLADGAKLEMEFRIERGKGYR 149
[226][TOP]
>UniRef100_Q8DML0 DNA-directed RNA polymerase subunit alpha n=1
Tax=Thermosynechococcus elongatus BP-1 RepID=RPOA_THEEB
Length = 321
Score = 62.0 bits (149), Expect(2) = 6e-10
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNEK-----QEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
+DA+FMPVR N+++ S + + Q+ L LEIWTNGSLTP++AL +A+ L+DLF
Sbjct: 169 LDAVFMPVRRVNYTVDSVRSAGAEGDRQLQDYLKLEIWTNGSLTPQDALNQAATILVDLF 228
Query: 103 IPF----LHAEEEKLNFENXE 53
P LH E ++ E
Sbjct: 229 SPLKEVPLHTSEATATDDHDE 249
Score = 25.0 bits (53), Expect(2) = 6e-10
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V +V+ +IA + L + +IE+DRGYR
Sbjct: 121 VEVVNPNHYIATLMPGATLEMEFKIEKDRGYR 152
[227][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 65.9 bits (159), Expect = 1e-09
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN Q + IDA F PV+ AN SIHS + Q++L LEIWTN +LTP EALY+A +L
Sbjct: 172 KNHQ--GFFIDANFTPVQKANFSIHSVGDPKGLQQLLLLEIWTNKTLTPAEALYQAHASL 229
Query: 115 IDLF----IPFLHAE 83
++LF P LH E
Sbjct: 230 LNLFHQISPPLLHKE 244
[228][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 61.6 bits (148), Expect(2) = 2e-09
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
ID++FMPVR N+++ + G +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 184 IDSVFMPVRKVNYTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSP 241
Score = 23.9 bits (50), Expect(2) = 2e-09
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V +++ HIA + E L + I R RGYR
Sbjct: 136 VEVINPRHHIATLAEGAILEMEFMIGRGRGYR 167
[229][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 57.4 bits (137), Expect(2) = 2e-09
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 92
ID++FMPV N+++ +G ++ L L+IWTNGS+ P+EAL EAS + +LFIP
Sbjct: 166 IDSVFMPVTKVNYTVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLK 225
Query: 91 HAEE 80
E
Sbjct: 226 DLNE 229
Score = 28.1 bits (61), Expect(2) = 2e-09
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
V ++D Q+IA + E +L + ++ER GYR+
Sbjct: 118 VEVIDPNQYIATLAEGAKLEMEFRVERGVGYRV 150
[230][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 60.8 bits (146), Expect(2) = 2e-09
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 92
IDAI+MPVR N+ + + V G +++ L L+IWTNG+LTP+E+L +A+ L+DLF P
Sbjct: 166 IDAIYMPVRRVNYEVEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLK 225
Query: 91 HAE---EEKLNFENXEHKVTLPL 32
A E + E + +P+
Sbjct: 226 DATFNVVEDIELEEEDETNQIPI 248
Score = 24.3 bits (51), Expect(2) = 2e-09
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGY 312
V IV+ TQ++A ++ L + +IE+ +GY
Sbjct: 118 VEIVNPTQYVATLSSDATLEMEFRIEQGKGY 148
[231][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 57.8 bits (138), Expect(2) = 3e-09
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = -2
Query: 271 NIDAIFMPVRNANHSIHSYVNG-NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
+IDAIFMPVR N ++ S + N +Q+ L LEIWT+GSL+P+EAL +A++ L+D P
Sbjct: 165 SIDAIFMPVRKVNWTVESERSAANVEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRP 223
Score = 26.9 bits (58), Expect(2) = 3e-09
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V +V +IA + E QL + QIER +GYR
Sbjct: 118 VQVVHPRHYIATLAEDGQLEMEFQIERGKGYR 149
[232][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 57.4 bits (137), Expect(2) = 4e-09
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 92
IDA+FMPV N+S+ S + G+ ++ L LEIWTNGS+ P+EAL +A+ ++LF P
Sbjct: 166 IDAVFMPVTKVNYSVDSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNPLK 225
Query: 91 HAEEEKLNFENXE 53
E + E E
Sbjct: 226 DLTLEAIQDELQE 238
Score = 26.9 bits (58), Expect(2) = 4e-09
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V +VD TQ+IA + + +L + +IE+ + YR
Sbjct: 118 VEVVDPTQYIATLADGAKLEMEFRIEKGKSYR 149
[233][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 44.7 bits (104), Expect(2) = 4e-09
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE 200
K DG + +DA+FMP+RNAN+SIHS+ N N+
Sbjct: 163 KKSTDGLFFVDAVFMPIRNANYSIHSFENKNK 194
Score = 39.7 bits (91), Expect(2) = 4e-09
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKK 291
V I+D TQ+IA +T+ I L I +IE+D GYRI KK
Sbjct: 127 VKIIDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSKK 164
[234][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 54.7 bits (130), Expect(2) = 5e-09
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
ID++FMPVR N+S+ + ++ L LE+WTNGS++P+EAL A+ L++LF P
Sbjct: 166 IDSVFMPVRKVNYSVEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNP 223
Score = 29.3 bits (64), Expect(2) = 5e-09
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V ++D TQ++A + E +L + +IE+ +GYR
Sbjct: 118 VEVIDQTQYVATLAEGGKLEMEFRIEKGKGYR 149
[235][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 59.3 bits (142), Expect(2) = 5e-09
Identities = 29/56 (51%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLF 104
IDAIFMPVR N+++ +G +++ L LEIWT+GSLTP+EA+ +A+ L+DLF
Sbjct: 166 IDAIFMPVRKVNYTVEDARDGGSLEKDRLTLEIWTSGSLTPQEAISQAAAILVDLF 221
Score = 24.6 bits (52), Expect(2) = 5e-09
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V +V+ Q+IA ++ L + QIE+ GYR
Sbjct: 118 VEVVNKNQYIATLSPGATLEMECQIEKGTGYR 149
[236][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 58.5 bits (140), Expect(2) = 5e-09
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
ID+IFMPV+ N+ + ++ E L LE+WTNGSL+P++++ AS NL+ LF P
Sbjct: 169 IDSIFMPVKKVNYYVEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
Score = 25.4 bits (54), Expect(2) = 5e-09
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
+ +VD Q+IA ++ L + L++E+ GY++
Sbjct: 122 ITVVDPCQYIATISGNDYLEMELKVEKSSGYKL 154
[237][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 60.5 bits (145), Expect(2) = 1e-08
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
ID++FMPVR N+++ + G +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 186 IDSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAP 243
Score = 21.9 bits (45), Expect(2) = 1e-08
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V +++ HIA + E L + I R GYR
Sbjct: 138 VEVINPRHHIATLAEGAILEMEFMIGRGHGYR 169
[238][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 62.4 bits (150), Expect = 2e-08
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGN-EKQEILFLEIWTNGSLTPKEALYEASRNLIDLF---- 104
IDAIFMPVR N+++ +G +++ L LEIWTNGSLTP+EAL + + L+DLF
Sbjct: 165 IDAIFMPVRKVNYTVEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNPLK 224
Query: 103 -IPFLHAEEEKLNFENXEHKVTL 38
+PF +E E+ +++ +
Sbjct: 225 DVPFRSSEPSHSTEEDETNQIPI 247
[239][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 62.4 bits (150), Expect = 2e-08
Identities = 44/96 (45%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = -2
Query: 337 YKLRGIVDIV*TH*KNFQDGSYNIDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWTNG 161
YKL G T K QD IDAIFMPV+ + I + Y N N+ E LFL+IWTNG
Sbjct: 148 YKLAGQ-----TFCKKSQD-YLQIDAIFMPVQKVDFKIENIYDNSNDLTERLFLDIWTNG 201
Query: 160 SLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENXE 53
S++P+EA+ ASR +I F L E KL E E
Sbjct: 202 SMSPEEAVSSASRFIISFFSSLL---ENKLPQETKE 234
[240][TOP]
>UniRef100_B4WHD8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7335 RepID=B4WHD8_9SYNE
Length = 315
Score = 59.3 bits (142), Expect(2) = 2e-08
Identities = 27/58 (46%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
IDA+FMPVR N+S+ ++++ ++ L +EIWTNGSLT ++A+ EA+ L+D+F P
Sbjct: 166 IDAVFMPVRKVNYSVENFIDPEGFPKDRLVMEIWTNGSLTAQQAMSEAAALLVDMFNP 223
Score = 22.7 bits (47), Expect(2) = 2e-08
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V ++ ++IA+V +L + +IER +GY+
Sbjct: 118 VELISTDRYIASVAAGHKLEMEFRIERGKGYK 149
[241][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 57.4 bits (137), Expect(2) = 2e-08
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
K FQ IDA+FMPV N+++ G+ QE + +E+WTNGS+ ++A+ + +
Sbjct: 162 KTFQVDVLPIDAVFMPVTKVNYTVEENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKI 221
Query: 115 IDLFIP 98
I+LF P
Sbjct: 222 INLFSP 227
Score = 24.3 bits (51), Expect(2) = 2e-08
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKK 291
+ +VD Q+IA ++ + L + +E +GY++ +K
Sbjct: 123 IELVDPDQYIATISGRVSLNMEFTVEVGKGYQLPDYEK 160
[242][TOP]
>UniRef100_Q6J223 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cylindrotheca
fusiformis RepID=Q6J223_CYLFU
Length = 291
Score = 61.2 bits (147), Expect = 3e-08
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = -2
Query: 283 DGSYNIDAIFMPVRNANHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL 107
D +D IFMPV+ N I + Y N N E +FL+IWTNGS++P EAL A++ IDL
Sbjct: 152 DNYLQLDTIFMPVQKVNFKIENVYDNNNNITEQVFLDIWTNGSISPNEALKSAAQITIDL 211
Query: 106 FIPFLHAEEEK 74
F L +E K
Sbjct: 212 FELLLKNKETK 222
[243][TOP]
>UniRef100_Q6B8X4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gracilaria
tenuistipitata var. liui RepID=RPOA_GRATL
Length = 314
Score = 58.2 bits (139), Expect(2) = 4e-08
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL 92
IDA+FMPV N+++ ++ QE LFLE+WTNGSL+P+EA+ E ++ L LF P
Sbjct: 165 IDAVFMPVTKFNYTVEEKKISPILIQEKLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLT 224
Query: 91 HAEEEKLNFEN 59
+ LNF+N
Sbjct: 225 N-----LNFQN 230
Score = 22.7 bits (47), Expect(2) = 4e-08
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
++I+D Q+IA + + +IE+ GY++
Sbjct: 118 ILIIDPQQYIATICNNTIFEMEFRIEKGSGYKL 150
[244][TOP]
>UniRef100_Q110D1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Trichodesmium
erythraeum IMS101 RepID=RPOA_TRIEI
Length = 314
Score = 57.8 bits (138), Expect(2) = 4e-08
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
IDAIFMPVR N++I +++ + +Q+ L ++IWTNGS TP++AL A+ L+ LF P
Sbjct: 166 IDAIFMPVRKVNYTIEDAHIGSSLEQDRLIMDIWTNGSYTPQDALSNAAGILMSLFEP 223
Score = 23.1 bits (48), Expect(2) = 4e-08
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYR 309
V ++D +Q+IA ++ L + +IE+ GY+
Sbjct: 118 VEVIDRSQYIATLSPGSILEMEFRIEKGTGYK 149
[245][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 60.5 bits (145), Expect = 6e-08
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
IDA+FMPV N+S+ S + G E + + L LEIWTNGS PKEAL +A+ L+DLF P
Sbjct: 166 IDAVFMPVTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[246][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 60.1 bits (144), Expect = 8e-08
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
IDA+FMPV N+S+ S + G E + + L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 166 IDAVFMPVTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[247][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 60.1 bits (144), Expect = 8e-08
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
IDA+FMPV N+S+ S + G E + + L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 166 IDAVFMPVTKVNYSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[248][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 53.9 bits (128), Expect(2) = 9e-08
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = -2
Query: 289 FQDGSYNIDAIFMPVRNANHSIHSYV--NGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
+Q GS DA+ MP+RNAN+SIH +G +E+ E T+GS TP EA YEASR+
Sbjct: 164 YQKGSPPPDAVSMPIRNANYSIHRLESHSGGIMKEMPPPEARTDGSPTPGEATYEASRDS 223
Query: 115 IDLFIP 98
+LF P
Sbjct: 224 ANLFSP 229
Score = 25.8 bits (55), Expect(2) = 9e-08
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 398 IVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKKFSR 282
I+ QH A VT I+ G ++E GYR + ++ +
Sbjct: 128 IIYPAQHAATVTRKIRSSTGSRVEGGCGYRRRNMVEYQK 166
[249][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 58.9 bits (141), Expect(2) = 1e-07
Identities = 29/73 (39%), Positives = 40/73 (54%)
Frame = -2
Query: 295 KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNL 116
KN S +DAIFMP+ N+ + E + LEIWTNGS++P++AL + +
Sbjct: 162 KNSYISSLPVDAIFMPIHKVNYMVEQDHTSKFLTERVILEIWTNGSISPRDALDIGIKKV 221
Query: 115 IDLFIPFLHAEEE 77
IDLF P H E
Sbjct: 222 IDLFNPLHHCSSE 234
Score = 20.4 bits (41), Expect(2) = 1e-07
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -1
Query: 404 VVIVDNTQHIANVTEPIQLCIGLQIERDRGYRI 306
+ +VD Q+IA ++ L + I +GY++
Sbjct: 123 IEVVDGGQYIATLSGNANLDMEFVINTGKGYQM 155
[250][TOP]
>UniRef100_Q6GZZ8 Putative RNA polymerase alpha subunit n=1 Tax=Fremyella diplosiphon
RepID=Q6GZZ8_FREDI
Length = 155
Score = 58.9 bits (141), Expect = 2e-07
Identities = 28/58 (48%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = -2
Query: 268 IDAIFMPVRNANHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 98
ID++FMPVR N+S+ + +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 6 IDSVFMPVRKVNYSVEEARGDGSITKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 63