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[1][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 238 bits (607), Expect = 2e-61
Identities = 117/124 (94%), Positives = 119/124 (95%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SVVIVDNT+HIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS
Sbjct: 126 SVVIVDNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN K
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHK 245
Query: 49 LLYP 38
+ P
Sbjct: 246 VTLP 249
[2][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 211 bits (537), Expect(2) = 1e-57
Identities = 103/124 (83%), Positives = 109/124 (87%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY IDA FMPVRN NHS
Sbjct: 126 SVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N EN K
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHK 245
Query: 49 LLYP 38
+ P
Sbjct: 246 VTLP 249
Score = 36.2 bits (82), Expect(2) = 1e-57
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++HKVTLPLFT HD+LAK K
Sbjct: 242 NQHKVTLPLFTFHDILAKEK 261
[3][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 211 bits (537), Expect(2) = 1e-57
Identities = 103/124 (83%), Positives = 109/124 (87%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY IDA FMPVRN NHS
Sbjct: 126 SVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N EN K
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHK 245
Query: 49 LLYP 38
+ P
Sbjct: 246 VTLP 249
Score = 36.2 bits (82), Expect(2) = 1e-57
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++HKVTLPLFT HD+LAK K
Sbjct: 242 NQHKVTLPLFTFHDILAKEK 261
[4][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 210 bits (535), Expect(2) = 2e-55
Identities = 103/125 (82%), Positives = 111/125 (88%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT++IAN+TEPI LCIGLQIER+RGY I T KNFQDGSY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ EN K
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQYK 245
Query: 49 LLYPF 35
+ PF
Sbjct: 246 VTLPF 250
Score = 29.6 bits (65), Expect(2) = 2e-55
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
+++KVTLP FT HD LAK +
Sbjct: 242 NQYKVTLPFFTFHDRLAKLR 261
[5][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 204 bits (520), Expect(2) = 2e-55
Identities = 100/124 (80%), Positives = 108/124 (87%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDN +HIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY+IDA FMPVRN N+S
Sbjct: 126 SVEIVDNRQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS+NLIDLFIPFLHAEEE N E K
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNLEKKKHK 245
Query: 49 LLYP 38
+ P
Sbjct: 246 VTLP 249
Score = 35.4 bits (80), Expect(2) = 2e-55
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -2
Query: 65 KHEHKVTLPLFTCHDLLAKTK 3
K +HKVTLPLFT HD+L K K
Sbjct: 241 KKKHKVTLPLFTFHDILVKDK 261
[6][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 216 bits (549), Expect = 8e-55
Identities = 106/124 (85%), Positives = 110/124 (88%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIAN+TEPI LCI LQIER RGYRI TL N QDGSY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE LNFEN K
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHK 245
Query: 49 LLYP 38
+ P
Sbjct: 246 VTLP 249
[7][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 199 bits (507), Expect(2) = 2e-54
Identities = 97/124 (78%), Positives = 108/124 (87%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDN +HIANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY+IDA FMPVRN N+S
Sbjct: 126 SVEIVDNRQHIANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEAS+NLI+LFIPFLHAEE+ + E K
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHLEKNQHK 245
Query: 49 LLYP 38
+ P
Sbjct: 246 VTLP 249
Score = 36.6 bits (83), Expect(2) = 2e-54
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -2
Query: 65 KHEHKVTLPLFTCHDLLAKTK 3
K++HKVTLPLFT HD+L K K
Sbjct: 241 KNQHKVTLPLFTFHDILVKDK 261
[8][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 214 bits (545), Expect = 2e-54
Identities = 103/124 (83%), Positives = 110/124 (88%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV ++DNT+HIAN+TEPI LCI LQIER RGYRI TL N QDGSY IDA+FMPVRNANHS
Sbjct: 125 SVEVIDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHS 184
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSYVNGN+KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE LNFEN K
Sbjct: 185 IHSYVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHK 244
Query: 49 LLYP 38
+ P
Sbjct: 245 MTLP 248
[9][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 200 bits (509), Expect(2) = 6e-52
Identities = 98/125 (78%), Positives = 106/125 (84%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIA++TEPI LCIGLQIER+RGY I T NF DGSY ID +FMPVRN NHS
Sbjct: 128 SVEIVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPVRNVNHS 187
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + EN K
Sbjct: 188 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHLENSQHK 247
Query: 49 LLYPF 35
+ PF
Sbjct: 248 VTLPF 252
Score = 27.7 bits (60), Expect(2) = 6e-52
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 59 EHKVTLPLFTCHDLLAKTK 3
+HKVTLP F HD L K +
Sbjct: 245 QHKVTLPFFPFHDKLTKLR 263
[10][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 197 bits (501), Expect(2) = 2e-51
Identities = 96/123 (78%), Positives = 106/123 (86%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V I+DNT+HIA++TE I LCIGLQIER+RGYRI NFQDGSY IDA+FMPVRNANHS+
Sbjct: 127 VEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSV 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E K+
Sbjct: 187 HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKV 246
Query: 46 LYP 38
P
Sbjct: 247 TLP 249
Score = 29.3 bits (64), Expect(2) = 2e-51
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++HKVTLPLFT H L K +
Sbjct: 242 NQHKVTLPLFTFHGRLTKLR 261
[11][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 204 bits (519), Expect = 2e-51
Identities = 99/124 (79%), Positives = 109/124 (87%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIAN+TEPI LC+ L++ER+RGYRI TL N QD SY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+KLN EN K
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNLENNQQK 245
Query: 49 LLYP 38
+ P
Sbjct: 246 VTLP 249
[12][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 197 bits (501), Expect(2) = 4e-51
Identities = 98/120 (81%), Positives = 104/120 (86%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIAN+ EPI LCI L+IER+RGY I T NFQD SY +DAIFMPVRN NHS
Sbjct: 126 SVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSYVNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEEK NF N K
Sbjct: 186 IHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNK 245
Score = 28.1 bits (61), Expect(2) = 4e-51
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++ KVTLPLFT H+ LAK +
Sbjct: 244 NKKKVTLPLFTFHEKLAKLR 263
[13][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 192 bits (487), Expect(2) = 5e-51
Identities = 93/124 (75%), Positives = 106/124 (85%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA++ EPI L IGL+IER+RGY + KNFQDGSY+IDA+FMPVRNANHS
Sbjct: 126 SVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E K
Sbjct: 186 VHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLEKNQHK 245
Query: 49 LLYP 38
+ P
Sbjct: 246 ITLP 249
Score = 33.1 bits (74), Expect(2) = 5e-51
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 65 KHEHKVTLPLFTCHDLLAKTK 3
K++HK+TLPLF HD LAK +
Sbjct: 241 KNQHKITLPLFAFHDRLAKLR 261
[14][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 192 bits (487), Expect(2) = 5e-51
Identities = 93/124 (75%), Positives = 106/124 (85%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA++ EPI L IGL+IER+RGY + KNFQDGSY+IDA+FMPVRNANHS
Sbjct: 126 SVEIIDNTQHIASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E K
Sbjct: 186 VHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHLEKNQHK 245
Query: 49 LLYP 38
+ P
Sbjct: 246 ITLP 249
Score = 33.1 bits (74), Expect(2) = 5e-51
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 65 KHEHKVTLPLFTCHDLLAKTK 3
K++HK+TLPLF HD LAK +
Sbjct: 241 KNQHKITLPLFAFHDRLAKLR 261
[15][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 198 bits (504), Expect(2) = 1e-50
Identities = 97/125 (77%), Positives = 106/125 (84%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+H+A++TEPI LCIGLQIER+RGY I T KNF DGSY IDA+FMPVRNANHS
Sbjct: 128 SVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHS 187
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IH Y N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ EN
Sbjct: 188 IHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLENNQHD 247
Query: 49 LLYPF 35
+ PF
Sbjct: 248 VTLPF 252
Score = 25.4 bits (54), Expect(2) = 1e-50
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAK 9
++H VTLP F HD L K
Sbjct: 244 NQHDVTLPFFPFHDRLVK 261
[16][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 200 bits (508), Expect = 5e-50
Identities = 99/126 (78%), Positives = 110/126 (87%), Gaps = 1/126 (0%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV +VD T+HIA++TEPI LCIGLQI+RDRGYR+ T KN QDGSY IDA+ MPVRNANHS
Sbjct: 126 SVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMNI 53
IHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +NF EN N
Sbjct: 186 IHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNR 245
Query: 52 KLLYPF 35
+ PF
Sbjct: 246 FTVPPF 251
[17][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 200 bits (508), Expect = 5e-50
Identities = 99/126 (78%), Positives = 110/126 (87%), Gaps = 1/126 (0%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV +VD T+HIA++TEPI LCIGLQI+RDRGYR+ T KN QDGSY IDA+ MPVRNANHS
Sbjct: 126 SVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMNI 53
IHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +NF EN N
Sbjct: 186 IHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNR 245
Query: 52 KLLYPF 35
+ PF
Sbjct: 246 FTVPPF 251
[18][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 189 bits (480), Expect(2) = 9e-50
Identities = 92/116 (79%), Positives = 103/116 (88%), Gaps = 2/116 (1%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQ--DGSYNIDAIFMPVRNANH 233
V I+DNT+HIA++T+ I LCIGLQIER+RGYRI NFQ DGSY+IDA+FMPVRNANH
Sbjct: 127 VEIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMPVRNANH 186
Query: 232 SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
S+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID FIPFLHAEEE L+ E
Sbjct: 187 SVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLHLE 242
Score = 31.6 bits (70), Expect(2) = 9e-50
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -2
Query: 65 KHEHKVTLPLFTCHDLLAKTK 3
K++HKVTLPLF HD L K +
Sbjct: 245 KNQHKVTLPLFCFHDKLTKLR 265
[19][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 194 bits (494), Expect(2) = 9e-50
Identities = 97/124 (78%), Positives = 104/124 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIA + EPI LCIGLQIER+RGY I NFQDGSY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNE+QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E K
Sbjct: 186 IHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHK 245
Query: 49 LLYP 38
P
Sbjct: 246 STLP 249
Score = 26.2 bits (56), Expect(2) = 9e-50
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++HK TLP T HD LAK +
Sbjct: 242 NQHKSTLPPLTFHDRLAKLR 261
[20][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 194 bits (494), Expect(2) = 9e-50
Identities = 97/124 (78%), Positives = 104/124 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIA + EPI LCIGLQIER+RGY I NFQDGSY IDA+FMPVRNANHS
Sbjct: 120 SVEIVDNTQHIARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHS 179
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNE+QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E K
Sbjct: 180 IHSYGNGNERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHK 239
Query: 49 LLYP 38
P
Sbjct: 240 STLP 243
Score = 26.2 bits (56), Expect(2) = 9e-50
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++HK TLP T HD LAK +
Sbjct: 236 NQHKSTLPPLTFHDRLAKLR 255
[21][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 195 bits (496), Expect(2) = 1e-49
Identities = 94/124 (75%), Positives = 106/124 (85%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA++ EPI LCIGLQIER+RGY I + NFQDGSY IDA+FMPVRNANHS
Sbjct: 126 SVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE L+ N
Sbjct: 186 IHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGNNKYN 245
Query: 49 LLYP 38
+ +P
Sbjct: 246 VTFP 249
Score = 24.6 bits (52), Expect(2) = 1e-49
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
+++ VT PLFT H LAK +
Sbjct: 242 NKYNVTFPLFTFHKKLAKLR 261
[22][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 193 bits (490), Expect(2) = 2e-49
Identities = 93/124 (75%), Positives = 105/124 (84%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA++ EPI LCIGLQIER+RGY I + NFQDGSY IDA+FMPVRNANHS
Sbjct: 126 SVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE L+
Sbjct: 186 IHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGKNKYN 245
Query: 49 LLYP 38
+ +P
Sbjct: 246 VTFP 249
Score = 26.6 bits (57), Expect(2) = 2e-49
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 65 KHEHKVTLPLFTCHDLLAKTK 3
K+++ VT PLFT H LAK +
Sbjct: 241 KNKYNVTFPLFTFHKKLAKLR 261
[23][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 191 bits (484), Expect(2) = 3e-49
Identities = 93/125 (74%), Positives = 106/125 (84%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIA++TEP LCIGLQIER+RGYR+ T Q+GSY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ + E+ +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIILEDNQNR 245
Query: 49 LLYPF 35
+ PF
Sbjct: 246 VTLPF 250
Score = 28.5 bits (62), Expect(2) = 3e-49
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++++VTLP FT HD LAK K
Sbjct: 242 NQNRVTLPFFTFHDGLAKLK 261
[24][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 190 bits (483), Expect(2) = 3e-49
Identities = 93/124 (75%), Positives = 104/124 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA++TEPI LCIGLQIER+RGY + T KN QDG Y IDA+FMPVRNANHS
Sbjct: 126 SVEIIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHA EE ++ K
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFILKDNQNK 245
Query: 49 LLYP 38
+ P
Sbjct: 246 VALP 249
Score = 28.9 bits (63), Expect(2) = 3e-49
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
+++KV LPLFT HD LAK +
Sbjct: 242 NQNKVALPLFTFHDRLAKQR 261
[25][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 196 bits (499), Expect = 5e-49
Identities = 95/123 (77%), Positives = 105/123 (85%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVD T++IAN+TEPI LCI L+I+RDRGYR+ + N QDGSY IDA+FMPVRNANHSI
Sbjct: 127 VEIVDTTQYIANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
HSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +NFE K
Sbjct: 187 HSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINFEENKNKF 246
Query: 46 LYP 38
P
Sbjct: 247 TLP 249
[26][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 196 bits (499), Expect = 5e-49
Identities = 97/128 (75%), Positives = 110/128 (85%), Gaps = 3/128 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIAN+TEPI LCIGLQIERDRGYR+ T N+QDGSY ID +FMPVRNANHS
Sbjct: 126 SVEIVDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL---NFENM 59
IHSY NG EKQEILFLEIWTNGSLTPKEALYEASRNLI+LFIPFLHAEE+++ + EN+
Sbjct: 186 IHSYGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILLEDSENI 245
Query: 58 NIKLLYPF 35
+ L+ F
Sbjct: 246 STVPLFTF 253
[27][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 189 bits (481), Expect(2) = 6e-49
Identities = 94/123 (76%), Positives = 104/123 (84%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TEPI LCIGLQ+ER+RGY I NFQDGS+ IDA+FMPVRN NHSI
Sbjct: 127 VEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
HSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDL IPFLHA EE +N E+ K+
Sbjct: 187 HSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHA-EENVNLEDNQHKV 245
Query: 46 LYP 38
P
Sbjct: 246 SLP 248
Score = 28.5 bits (62), Expect(2) = 6e-49
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++HKV+LPLFT H+ LA+ +
Sbjct: 241 NQHKVSLPLFTFHNRLAEIR 260
[28][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 196 bits (498), Expect = 7e-49
Identities = 98/125 (78%), Positives = 107/125 (85%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIA++TEPI L IGLQIER+RGY I T NFQDGSY IDA+FMPV+NANHS
Sbjct: 126 SVEIVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLHAEEEK EN K
Sbjct: 186 IHSYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLENNQHK 245
Query: 49 LLYPF 35
+ PF
Sbjct: 246 VTLPF 250
[29][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 196 bits (497), Expect = 9e-49
Identities = 98/126 (77%), Positives = 105/126 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIAN+TEPI L I LQI+RDRGYR+ N QDGSY IDA+ MPVRNANHS
Sbjct: 126 SVEIVDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NFE +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNR 245
Query: 49 LLYPFL 32
PFL
Sbjct: 246 FTLPFL 251
[30][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 195 bits (496), Expect = 1e-48
Identities = 98/119 (82%), Positives = 103/119 (86%), Gaps = 1/119 (0%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIAN+TEPI LCIGLQI RDRGYR N Q+GSY IDA+ MPVRNANHS
Sbjct: 126 SVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMN 56
IHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NF EN N
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFKENKN 244
[31][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 195 bits (496), Expect = 1e-48
Identities = 95/114 (83%), Positives = 102/114 (89%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVD T+HIAN+TEPI LCI LQI+RDRGYR+ + N QDGSY IDA+ MPVRNANHSI
Sbjct: 127 VEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
HSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NFE
Sbjct: 187 HSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFE 240
[32][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 195 bits (495), Expect = 2e-48
Identities = 97/125 (77%), Positives = 106/125 (84%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIAN+TEPI LCI LQIER+RGYRI T NFQ+GSY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSYVNGNE QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPF HAEE N ++
Sbjct: 186 IHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEEHLENNQHKGTL 245
Query: 49 LLYPF 35
L+ F
Sbjct: 246 PLFNF 250
[33][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 194 bits (492), Expect = 3e-48
Identities = 96/129 (74%), Positives = 108/129 (83%), Gaps = 4/129 (3%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+H+A++TEPI LCIGLQIER+RGY I T KNF DGSY IDA+FMPVRNANHS
Sbjct: 128 SVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHS 187
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN---- 62
IH Y N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFI FLHA+EE L+ EN
Sbjct: 188 IHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHLENNQHD 247
Query: 61 MNIKLLYPF 35
+ + +PF
Sbjct: 248 VTLHFFFPF 256
[34][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 194 bits (492), Expect = 3e-48
Identities = 97/125 (77%), Positives = 107/125 (85%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TEPI CIGLQIER+RGY I T +NFQDGSY IDA+FMPVRNANHSI
Sbjct: 127 VEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMNIK 50
HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L +N +
Sbjct: 187 HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTV 246
Query: 49 LLYPF 35
L PF
Sbjct: 247 PLSPF 251
[35][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 186 bits (472), Expect(2) = 4e-48
Identities = 95/126 (75%), Positives = 104/126 (82%), Gaps = 1/126 (0%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-YNIDAIFMPVRNANH 233
SV IVDNT+HIA++TEPI L IGLQIER RGY I T FQDG+ Y IDA+FMPVRNANH
Sbjct: 126 SVEIVDNTQHIASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMPVRNANH 185
Query: 232 SIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNI 53
SI SY NGNEKQEILFLEIWTNGSLTPKEAL+EASR+LIDLFIPFL AE+E L EN
Sbjct: 186 SIQSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLPLENNQY 245
Query: 52 KLLYPF 35
K+ PF
Sbjct: 246 KVTLPF 251
Score = 29.3 bits (64), Expect(2) = 4e-48
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAK 9
+++KVTLP FT HD LAK
Sbjct: 243 NQYKVTLPFFTFHDRLAK 260
[36][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 193 bits (490), Expect = 6e-48
Identities = 94/125 (75%), Positives = 105/125 (84%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV VDNT+HIAN+TEPI CI L+IER+RGYR+ T N QDGSY IDA+FMPVRNANHS
Sbjct: 126 SVETVDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHA+EE + E+
Sbjct: 186 IHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLEDNQNG 245
Query: 49 LLYPF 35
+ PF
Sbjct: 246 VTLPF 250
[37][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 193 bits (490), Expect = 6e-48
Identities = 97/125 (77%), Positives = 106/125 (84%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSI
Sbjct: 127 VEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMNIK 50
HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L +N +
Sbjct: 187 HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTV 246
Query: 49 LLYPF 35
L PF
Sbjct: 247 PLSPF 251
[38][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 192 bits (489), Expect = 7e-48
Identities = 94/116 (81%), Positives = 103/116 (88%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIA +TEPI CIGLQIER+RGY + T NF+DGSY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDNTQHIAWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLED 241
[39][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 192 bits (488), Expect = 1e-47
Identities = 93/116 (80%), Positives = 103/116 (88%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T++IA++TEPI LCI LQIERDRGYRI T N+QDGSY IDA+ MPVRNANHS
Sbjct: 126 SVKIVDTTQYIASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
IHSY NGNEKQEILFLEIWTNGS TPKEALYEASRNLIDLF+PFLHAEE+ +N E+
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINVED 241
[40][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 191 bits (485), Expect = 2e-47
Identities = 96/124 (77%), Positives = 103/124 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIAN+TEPI L I LQI+RDRGYRIN N QDGSY IDA+ MPVRNANHS
Sbjct: 124 SVEIVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNANHS 183
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE ++FE +
Sbjct: 184 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHFEENKNR 243
Query: 49 LLYP 38
P
Sbjct: 244 FTLP 247
[41][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 191 bits (485), Expect = 2e-47
Identities = 95/125 (76%), Positives = 106/125 (84%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSI
Sbjct: 127 VEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMNIK 50
HSY NGNEKQEILF+EIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ L +N +
Sbjct: 187 HSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTV 246
Query: 49 LLYPF 35
L PF
Sbjct: 247 PLSPF 251
[42][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 191 bits (485), Expect = 2e-47
Identities = 95/125 (76%), Positives = 106/125 (84%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSI
Sbjct: 127 VEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMNIK 50
HSY NGNEKQEILF+EIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ L +N +
Sbjct: 187 HSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTV 246
Query: 49 LLYPF 35
L PF
Sbjct: 247 PLSPF 251
[43][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 190 bits (483), Expect = 4e-47
Identities = 90/115 (78%), Positives = 103/115 (89%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V I+DNT+HIA++TEPI+LCIGLQIER+RGY I T KNFQDGSY IDA+FMPVRN NHSI
Sbjct: 127 VEIIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPVRNVNHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
+SY GN+K EILFLEIWTNGSLTPKEAL+EA+RNLIDLFIPFLH EEE L+ E+
Sbjct: 187 YSYGTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDLED 241
[44][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 190 bits (482), Expect = 5e-47
Identities = 93/115 (80%), Positives = 101/115 (87%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TEPI LCIGLQI+R+RGY I NFQDGSY IDA+FMPVRNANHSI
Sbjct: 101 VEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNANHSI 160
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
HSY NGNEKQEILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEE L E+
Sbjct: 161 HSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLED 215
[45][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 189 bits (481), Expect = 6e-47
Identities = 95/126 (75%), Positives = 105/126 (83%), Gaps = 2/126 (1%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDA--IFMPVRNAN 236
SV IVDNT+HIAN+TEPI LCI LQIER RGYR T+ N QDGSY ID +FMPV +AN
Sbjct: 126 SVEIVDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFMPVIHAN 185
Query: 235 HSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMN 56
+SIHSY+N NEKQEILFLEIWTNGSLTPKEALYEA+RNLIDLFIPFLHAEEE +FEN
Sbjct: 186 YSIHSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENFHFENNQ 245
Query: 55 IKLLYP 38
K+ P
Sbjct: 246 HKVTLP 251
[46][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 189 bits (481), Expect = 6e-47
Identities = 93/126 (73%), Positives = 104/126 (82%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVD T+HIAN+TEPI L I LQ+ER+RGYRI T NFQDGSY ID +FMPVRN NHSI
Sbjct: 127 VEIVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVRNVNHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
HSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+E + E+ ++
Sbjct: 187 HSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLEDNQDRV 246
Query: 46 LYPFLL 29
P L
Sbjct: 247 TLPLFL 252
[47][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 189 bits (481), Expect = 6e-47
Identities = 97/126 (76%), Positives = 107/126 (84%), Gaps = 2/126 (1%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKN-FQDGSYNIDAIFMPVRNANHS 230
V IVDNT+HIA++ EPI LCIGLQIER+RGY I T N FQDGSY IDA+FMPVRNANHS
Sbjct: 127 VEIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHS 186
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMNI 53
IHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLIDLFIPFLH EEE L+ +N +
Sbjct: 187 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLHLADNQHT 246
Query: 52 KLLYPF 35
L PF
Sbjct: 247 VPLPPF 252
[48][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 187 bits (476), Expect(2) = 7e-47
Identities = 92/116 (79%), Positives = 102/116 (87%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIA++TEPI LCI LQIERDRGYR+ T N+QDGSY IDA+ MPVRNANHS
Sbjct: 126 SVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
IHSY N NEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ + E+
Sbjct: 186 IHSYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVLED 241
Score = 23.5 bits (49), Expect(2) = 7e-47
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 56 HKVTLPLFTCHDLLAKTK 3
++ T+PLFT HD LA +
Sbjct: 244 NRFTVPLFTFHDRLANIR 261
[49][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 188 bits (477), Expect(2) = 7e-47
Identities = 91/124 (73%), Positives = 103/124 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHS
Sbjct: 126 SVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLI+LFIPFLH EEE EN +
Sbjct: 186 IHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 49 LLYP 38
+ P
Sbjct: 246 VTLP 249
Score = 23.1 bits (48), Expect(2) = 7e-47
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++H+VTLP+F H+ L +
Sbjct: 242 NQHQVTLPVFPFHNKLVNLR 261
[50][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 189 bits (480), Expect = 8e-47
Identities = 96/126 (76%), Positives = 105/126 (83%), Gaps = 1/126 (0%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIAN+TEPI LCI LQI+RDRGYR+ + + DGSY ID + MPVRNANHS
Sbjct: 126 SVEIVDTTQHIANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMNI 53
IHSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLIDL IPFLHAEEE +NF EN N
Sbjct: 186 IHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNFKENENR 245
Query: 52 KLLYPF 35
L PF
Sbjct: 246 WNLPPF 251
[51][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 189 bits (480), Expect = 8e-47
Identities = 95/130 (73%), Positives = 108/130 (83%), Gaps = 3/130 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIA++TEPI LCI LQIERDRGYR+ N+QDGSY IDA+ MPVRNANHS
Sbjct: 126 SVEIVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF---ENM 59
IHSY +GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ ++ +N
Sbjct: 186 IHSYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQ 245
Query: 58 NIKLLYPFLL 29
N + PF L
Sbjct: 246 NRFTVSPFTL 255
[52][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 189 bits (479), Expect = 1e-46
Identities = 93/125 (74%), Positives = 105/125 (84%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIA++TEPI LCI LQI+RDRGYR+ T +Q+GSY IDA+ MPVRNANHS
Sbjct: 126 SVEIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E+ +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRLEDNPNR 245
Query: 49 LLYPF 35
PF
Sbjct: 246 FNIPF 250
[53][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 188 bits (478), Expect = 1e-46
Identities = 93/125 (74%), Positives = 104/125 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIA +TEP+ LCI L+IER RGY + T N+QDGSY IDA+ MPVRNANHS
Sbjct: 126 SVEIVDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ +N E+ +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINIEDNLKR 245
Query: 49 LLYPF 35
PF
Sbjct: 246 ATVPF 250
[54][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 188 bits (478), Expect = 1e-46
Identities = 92/124 (74%), Positives = 103/124 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIA +TEP+ L IGLQI+RDRGYR+ N QDGSY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I+SY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ +N E +
Sbjct: 186 IYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLEENKSR 245
Query: 49 LLYP 38
P
Sbjct: 246 FTLP 249
[55][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 188 bits (478), Expect = 1e-46
Identities = 95/125 (76%), Positives = 105/125 (84%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TE I CIGLQI+R+RGY I T NFQDGSY IDA+FMPVRNANHSI
Sbjct: 127 VEIVDNTQHIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMNIK 50
HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L +N +
Sbjct: 187 HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHTV 246
Query: 49 LLYPF 35
L PF
Sbjct: 247 PLSPF 251
[56][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 188 bits (477), Expect = 2e-46
Identities = 93/125 (74%), Positives = 105/125 (84%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIA++TEPI LCI LQIER+RGYR+ T N Q+ SY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWT+GSLTPKEALYEASRNLIDLFIPFLHAEE+ E+ +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLEDNQSR 245
Query: 49 LLYPF 35
+ PF
Sbjct: 246 VTLPF 250
[57][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 187 bits (476), Expect = 2e-46
Identities = 91/116 (78%), Positives = 102/116 (87%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIAN+TE + LCI LQIERDRGY + T N +DGSY IDAIFMPVRNANHS
Sbjct: 126 SVEIVDATQHIANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
+HSY NGNEKQEILF+EIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE +++ E+
Sbjct: 186 VHSYGNGNEKQEILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHLED 241
[58][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 187 bits (474), Expect(2) = 2e-46
Identities = 93/126 (73%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIA++TEP+ CIGLQIE +RGYR+ T N Q GSY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENMNI 53
IHSY NGNE QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N +N
Sbjct: 186 IHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLKDNQKN 245
Query: 52 KLLYPF 35
+ PF
Sbjct: 246 GVTLPF 251
Score = 22.3 bits (46), Expect(2) = 2e-46
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 50 VTLPLFTCHDLLAKTK 3
VTLP FT HD K K
Sbjct: 247 VTLPFFTFHDGFDKLK 262
[59][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 187 bits (475), Expect = 3e-46
Identities = 92/116 (79%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKN-FQDGSYNIDAIFMPVRNANHS 230
V +VDNT+HIA++TEPI+LCIGLQIER+RGY I T N +DGSY IDA+FMPVRNANHS
Sbjct: 127 VEVVDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRNANHS 186
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
IHSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ N
Sbjct: 187 IHSYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLAN 242
[60][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 186 bits (472), Expect(2) = 3e-46
Identities = 90/125 (72%), Positives = 104/125 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE + EN +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYLENNQHQ 245
Query: 49 LLYPF 35
+ PF
Sbjct: 246 VTLPF 250
Score = 22.7 bits (47), Expect(2) = 3e-46
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++H+VTLP F H+ L +
Sbjct: 242 NQHQVTLPFFPFHNRLVNLR 261
[61][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 187 bits (474), Expect = 4e-46
Identities = 92/128 (71%), Positives = 106/128 (82%), Gaps = 3/128 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 49 L---LYPF 35
+ L+PF
Sbjct: 246 VTLPLFPF 253
[62][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 187 bits (474), Expect = 4e-46
Identities = 91/125 (72%), Positives = 103/125 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIA +TEPI LCIGL+IER+RGY + N +D SY IDA+FMPV+NANHS
Sbjct: 126 SVEIVDNTQHIATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 49 LLYPF 35
+ PF
Sbjct: 246 VTLPF 250
[63][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 187 bits (474), Expect = 4e-46
Identities = 92/128 (71%), Positives = 106/128 (82%), Gaps = 3/128 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 49 L---LYPF 35
+ L+PF
Sbjct: 246 VTLPLFPF 253
[64][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 187 bits (474), Expect = 4e-46
Identities = 92/128 (71%), Positives = 106/128 (82%), Gaps = 3/128 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA +TEPI LCIGLQIER+RGY + +F+DGSY IDA+FMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY GNEKQEILFLEIWTNG+LTPKEAL+EASRNLI+LFIPFLH EEE EN K
Sbjct: 186 IHSYGTGNEKQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHK 245
Query: 49 L---LYPF 35
+ L+PF
Sbjct: 246 VTLPLFPF 253
[65][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 186 bits (471), Expect(2) = 4e-46
Identities = 90/125 (72%), Positives = 103/125 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 49 LLYPF 35
+ PF
Sbjct: 246 VTLPF 250
Score = 22.7 bits (47), Expect(2) = 4e-46
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++H+VTLP F H+ L +
Sbjct: 242 NQHQVTLPFFPFHNRLVNLR 261
[66][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 186 bits (471), Expect = 9e-46
Identities = 94/127 (74%), Positives = 105/127 (82%), Gaps = 2/127 (1%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNI--DAIFMPVRNAN 236
SV +VD T+HIA++TEPI LCIGLQIERDRGYR+ T N QDGSY I +A+ MPVRNAN
Sbjct: 126 SVKMVDTTQHIASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSMPVRNAN 185
Query: 235 HSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMN 56
HSIHSY NGNEKQEILFLEIWTNGSLTPKEAL+EAS NLIDLFIPFLH EEE +N E+
Sbjct: 186 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDINLEDSL 245
Query: 55 IKLLYPF 35
+ PF
Sbjct: 246 NRGTLPF 252
[67][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 185 bits (470), Expect = 1e-45
Identities = 89/115 (77%), Positives = 101/115 (87%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA + EPI LCI L+IER+RGY I T +NFQDGSY IDA+FMP+RNAN+SI
Sbjct: 127 VEIVDNTQHIARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPIRNANYSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
HSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ + EN
Sbjct: 187 HSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHLEN 241
[68][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 184 bits (468), Expect = 2e-45
Identities = 91/128 (71%), Positives = 105/128 (82%), Gaps = 3/128 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA + EPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 49 L---LYPF 35
+ L+PF
Sbjct: 246 VTLPLFPF 253
[69][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 184 bits (467), Expect = 3e-45
Identities = 90/113 (79%), Positives = 98/113 (86%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIA +TEP+ LCI L+IER RGY T N+QDGSY IDA+ MPVRNANHS
Sbjct: 126 SVEIVDTTQHIAVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 71
IHSY NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ +N
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDIN 238
[70][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 184 bits (467), Expect = 3e-45
Identities = 95/125 (76%), Positives = 107/125 (85%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVD+T+HIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPVRNANHSI
Sbjct: 127 VEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
HSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+ + +
Sbjct: 187 HSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTI 244
Query: 46 -LYPF 35
L PF
Sbjct: 245 SLSPF 249
[71][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 183 bits (464), Expect(2) = 3e-45
Identities = 88/125 (70%), Positives = 102/125 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
+V I+DNT+HIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV NANHS
Sbjct: 126 AVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE EN +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 49 LLYPF 35
+ PF
Sbjct: 246 VTLPF 250
Score = 22.7 bits (47), Expect(2) = 3e-45
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++H+VTLP F H+ L +
Sbjct: 242 NQHQVTLPFFPFHNRLVNLR 261
[72][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 184 bits (466), Expect = 3e-45
Identities = 91/128 (71%), Positives = 105/128 (82%), Gaps = 3/128 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN +
Sbjct: 186 IHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQ 245
Query: 49 L---LYPF 35
+ L+PF
Sbjct: 246 VTLPLFPF 253
[73][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 184 bits (466), Expect = 3e-45
Identities = 92/128 (71%), Positives = 105/128 (82%), Gaps = 3/128 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIA VTE I LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHS
Sbjct: 126 SVEIVDNTQHIATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGN KQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE + EN +
Sbjct: 186 IHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHLENNQHQ 245
Query: 49 L---LYPF 35
+ L+PF
Sbjct: 246 VTLPLFPF 253
[74][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 183 bits (464), Expect = 6e-45
Identities = 91/128 (71%), Positives = 104/128 (81%), Gaps = 3/128 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA +TEPI LCIGLQIER+RGY + F+DGSY IDA+FMPV+NANHS
Sbjct: 126 SVEIMDNTQHIATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY GNE QEILFLEIWTNG+LTPKEAL+EASRNLI+LFIPFLH EEE EN K
Sbjct: 186 IHSYGTGNENQEILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNEDK 245
Query: 49 L---LYPF 35
+ L+PF
Sbjct: 246 VTLPLFPF 253
[75][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 182 bits (462), Expect = 1e-44
Identities = 95/128 (74%), Positives = 108/128 (84%), Gaps = 4/128 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKN-FQDGSYNIDAIFMPVRNANHS 230
V +VDNT+HIA++TEPI+L IGLQIER RGY I T N FQDGSY IDA+FMP+RNANHS
Sbjct: 127 VEVVDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRNANHS 186
Query: 229 IHSYVNGN--EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENM 59
IHSY NGN +KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ +N
Sbjct: 187 IHSYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLADNQ 246
Query: 58 NIKLLYPF 35
++ L PF
Sbjct: 247 HMVPLPPF 254
[76][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 181 bits (459), Expect = 2e-44
Identities = 92/126 (73%), Positives = 99/126 (78%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIAN+TEPI LCI LQI+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I+S N NEK EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE NFE +
Sbjct: 186 IYSCGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNFEENKNR 245
Query: 49 LLYPFL 32
P L
Sbjct: 246 FTLPLL 251
[77][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 176 bits (447), Expect(2) = 3e-44
Identities = 89/115 (77%), Positives = 98/115 (85%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVDNT+HIA + EPI LCIGLQIER+RGY +GSY IDA+FMPVRNANHS
Sbjct: 126 SVEIVDNTQHIARLMEPIDLCIGLQIERNRGY---------NGSYPIDAVFMPVRNANHS 176
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
IHSY NG+E+QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E
Sbjct: 177 IHSYGNGSERQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLE 231
Score = 25.8 bits (55), Expect(2) = 3e-44
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 62 HEHKVTLPLFTCHDLLAKTK 3
++HK TLP T HD LAK +
Sbjct: 233 NQHKGTLPPLTFHDRLAKLR 252
[78][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 181 bits (458), Expect = 3e-44
Identities = 89/115 (77%), Positives = 98/115 (85%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TEPI LCIGLQIER+RGY + N QDGSY IDA+FMPVRNANHSI
Sbjct: 127 VEIVDNTQHIASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
HSY +GNEK EILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEE E+
Sbjct: 187 HSYGSGNEKHEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLED 241
[79][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 180 bits (457), Expect = 4e-44
Identities = 90/128 (70%), Positives = 103/128 (80%), Gaps = 3/128 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+DNT+HIA +TE I LCIGL+IER+RGY + L F+D SY IDA+FMPV+NANHS
Sbjct: 126 SVEIIDNTQHIATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPVQNANHS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY NGN KQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE EN
Sbjct: 186 IHSYGNGNGKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHH 245
Query: 49 L---LYPF 35
+ L+PF
Sbjct: 246 VTLPLFPF 253
[80][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 180 bits (456), Expect = 5e-44
Identities = 93/125 (74%), Positives = 106/125 (84%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVD+T+HIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV+NANHSI
Sbjct: 127 VEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
HSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L E+ + +
Sbjct: 187 HSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADHTI 244
Query: 46 -LYPF 35
L PF
Sbjct: 245 PLSPF 249
[81][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 180 bits (456), Expect = 5e-44
Identities = 93/125 (74%), Positives = 106/125 (84%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVD+T+HIA +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV+NANHSI
Sbjct: 127 VEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
HSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L E+ + +
Sbjct: 187 HSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADHTI 244
Query: 46 -LYPF 35
L PF
Sbjct: 245 PLSPF 249
[82][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 178 bits (451), Expect = 2e-43
Identities = 92/125 (73%), Positives = 103/125 (82%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSI
Sbjct: 127 VEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE-NMNIK 50
HSY NGN +EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE LN E N +I
Sbjct: 187 HSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHIV 244
Query: 49 LLYPF 35
L PF
Sbjct: 245 PLPPF 249
[83][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 177 bits (450), Expect = 2e-43
Identities = 90/125 (72%), Positives = 106/125 (84%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V +VD+T+HIA + EPI LCIGL+IER+RGY + T NF+DGSY IDA+FMPV+NANHSI
Sbjct: 127 VEVVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPVQNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
HSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L+ E+ + +
Sbjct: 187 HSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHLEDADRTI 244
Query: 46 -LYPF 35
L PF
Sbjct: 245 PLSPF 249
[84][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 177 bits (450), Expect = 2e-43
Identities = 91/125 (72%), Positives = 103/125 (82%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V I+DNT+HIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSI
Sbjct: 127 VEILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE-NMNIK 50
HSY NGN +EILFLEIWTNGSLTPKEALYEASRNLIDL IPFLH +EE LN E N ++
Sbjct: 187 HSYENGN--KEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNLEGNQHMV 244
Query: 49 LLYPF 35
L PF
Sbjct: 245 PLPPF 249
[85][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 176 bits (446), Expect = 7e-43
Identities = 91/125 (72%), Positives = 102/125 (81%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA +TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSI
Sbjct: 127 VEIVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE-NMNIK 50
HSY NGN +EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE LN E N ++
Sbjct: 187 HSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHMI 244
Query: 49 LLYPF 35
L PF
Sbjct: 245 PLPPF 249
[86][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 176 bits (446), Expect = 7e-43
Identities = 91/125 (72%), Positives = 103/125 (82%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSI
Sbjct: 127 VEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE-NMNIK 50
HSY NGN +EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE L+ E N +I
Sbjct: 187 HSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSLEDNQHIV 244
Query: 49 LLYPF 35
L PF
Sbjct: 245 PLPPF 249
[87][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 176 bits (445), Expect = 9e-43
Identities = 89/115 (77%), Positives = 95/115 (82%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V I DNT+HIA +TEPI CIGL+IER RGY I + FQD SY IDA+FMPVRN NHSI
Sbjct: 112 VEIGDNTQHIARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNVNHSI 171
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
HSY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L EN
Sbjct: 172 HSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEN 224
[88][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 175 bits (443), Expect = 2e-42
Identities = 86/115 (74%), Positives = 96/115 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ +KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[89][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 174 bits (441), Expect = 3e-42
Identities = 88/126 (69%), Positives = 97/126 (76%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+ IAN+ EPI CI LQI+RDRGY KN QDGSY IDA+FMPVRN N+S
Sbjct: 126 SVEIVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE +
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNR 245
Query: 49 LLYPFL 32
L P L
Sbjct: 246 LTPPLL 251
[90][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 174 bits (440), Expect = 4e-42
Identities = 87/126 (69%), Positives = 97/126 (76%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+ IAN+ EP+ CI LQI+RDRGY KN QDGSY IDA+FMPVRN N+S
Sbjct: 126 SVEIVDTTQPIANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE +
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNR 245
Query: 49 LLYPFL 32
L P L
Sbjct: 246 LTPPLL 251
[91][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 174 bits (440), Expect = 4e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[92][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[93][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[94][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[95][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[96][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 96/115 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD ++ IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 131 SVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 190
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 191 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 245
[97][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[98][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[99][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[100][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[101][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 96/115 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD ++ IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[102][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[103][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[104][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[105][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[106][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 173 bits (439), Expect = 5e-42
Identities = 91/125 (72%), Positives = 104/125 (83%), Gaps = 1/125 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVD+T+HIA +TEPI IGL+IER+ GY I T NF+DGSY IDA+FMPVRNANHSI
Sbjct: 127 VEIVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPVRNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
+SY GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+ + +
Sbjct: 187 NSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTI 244
Query: 46 -LYPF 35
L PF
Sbjct: 245 PLSPF 249
[107][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
[108][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[109][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[110][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
[111][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[112][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 173 bits (439), Expect = 5e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
[113][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 173 bits (438), Expect = 6e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[114][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 173 bits (438), Expect = 6e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[115][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 173 bits (438), Expect = 6e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNLNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[116][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 173 bits (438), Expect = 6e-42
Identities = 86/115 (74%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[117][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 172 bits (437), Expect = 8e-42
Identities = 87/126 (69%), Positives = 96/126 (76%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+ EPI CI LQI+RDRGY KN QDGSY IDA+FMPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE +
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEESKNR 245
Query: 49 LLYPFL 32
L P L
Sbjct: 246 LTPPLL 251
[118][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 172 bits (436), Expect = 1e-41
Identities = 85/115 (73%), Positives = 94/115 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV +VD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEVVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGFE 240
[119][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 172 bits (436), Expect = 1e-41
Identities = 88/126 (69%), Positives = 96/126 (76%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE +
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 49 LLYPFL 32
P L
Sbjct: 246 FTPPLL 251
[120][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 172 bits (436), Expect = 1e-41
Identities = 87/126 (69%), Positives = 96/126 (76%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+ IAN+ EP+ CI LQI+RDR Y KN QDGSY IDA+FMPVRN N+S
Sbjct: 126 SVEIVDTTQPIANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE +FE +
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSFEENKNR 245
Query: 49 LLYPFL 32
L P L
Sbjct: 246 LTPPLL 251
[121][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 171 bits (434), Expect = 2e-41
Identities = 87/126 (69%), Positives = 97/126 (76%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ M VRN N+S
Sbjct: 126 SVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE +
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 49 LLYPFL 32
P L
Sbjct: 246 FTPPLL 251
[122][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 171 bits (434), Expect = 2e-41
Identities = 85/115 (73%), Positives = 94/115 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV VD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[123][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 171 bits (434), Expect = 2e-41
Identities = 88/125 (70%), Positives = 98/125 (78%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD T+HIA++TEPI CIGL+IER+RGYR T QD SY IDA+ MPVRNAN+S
Sbjct: 126 SVKIVDTTQHIASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSMPVRNANYS 183
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I Y N NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE L+ ++
Sbjct: 184 IQCYGNENEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHLDDDQNI 243
Query: 49 LLYPF 35
PF
Sbjct: 244 FTAPF 248
[124][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 85/115 (73%), Positives = 95/115 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI L+I+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[125][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 85/115 (73%), Positives = 94/115 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+ EPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
[126][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 171 bits (433), Expect = 2e-41
Identities = 86/115 (74%), Positives = 94/115 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[127][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 170 bits (430), Expect = 5e-41
Identities = 85/115 (73%), Positives = 94/115 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NG EK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[128][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 169 bits (428), Expect = 9e-41
Identities = 87/126 (69%), Positives = 95/126 (75%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE +
Sbjct: 186 IFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNR 245
Query: 49 LLYPFL 32
P L
Sbjct: 246 FTPPLL 251
[129][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 168 bits (426), Expect = 2e-40
Identities = 84/115 (73%), Positives = 93/115 (80%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEPI CI LQI+RDRGY+ KN+QDGSY I + MPVRN N+S
Sbjct: 126 SVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFE 65
I S NGNEK EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE
Sbjct: 186 IFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
[130][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 163 bits (413), Expect = 5e-39
Identities = 80/115 (69%), Positives = 98/115 (85%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVD+T+HIA++TEPI LCIGL+IER+RGY I FQ+ +Y++DA+FMPV N NHSI
Sbjct: 127 VEIVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPVLNVNHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
+SY GNEK+EILFLEIWTNGSLTPKEAL+EA++NL+DLFIPFL EEE LN E+
Sbjct: 187 YSY--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNLED 239
[131][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 162 bits (411), Expect = 8e-39
Identities = 81/119 (68%), Positives = 98/119 (82%), Gaps = 1/119 (0%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA++T+ I I L IE+DRGYRI + KN+QDG + IDA+FMPVRNAN+S
Sbjct: 126 SVRIIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVRNANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENMN 56
IHSY NGN+ QEILFLEIWTNGSL P+EALY ASRNLIDLFIPFL AEE+ ++ +N N
Sbjct: 186 IHSYGNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDGMDNQN 244
[132][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 162 bits (409), Expect = 1e-38
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[133][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[134][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNKK 243
[135][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNKK 243
[136][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[137][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[138][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNKK 243
[139][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[140][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 161 bits (407), Expect = 2e-38
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[141][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 159 bits (403), Expect = 7e-38
Identities = 79/120 (65%), Positives = 97/120 (80%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+ N+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE QE+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[142][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 159 bits (402), Expect = 9e-38
Identities = 82/126 (65%), Positives = 91/126 (72%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 106 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 165
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 166 IFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENQNR 225
Query: 49 LLYPFL 32
P L
Sbjct: 226 FTSPLL 231
[143][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 159 bits (402), Expect = 9e-38
Identities = 82/126 (65%), Positives = 91/126 (72%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 106 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 165
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 166 IFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 225
Query: 49 LLYPFL 32
P L
Sbjct: 226 FTSPLL 231
[144][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 159 bits (402), Expect = 9e-38
Identities = 82/126 (65%), Positives = 92/126 (73%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP+ I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 106 SVEIVDMAQPIANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNVNYS 165
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 166 IFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 225
Query: 49 LLYPFL 32
P L
Sbjct: 226 FTSPLL 231
[145][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/120 (65%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[146][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/120 (65%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[147][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/120 (65%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[148][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/120 (65%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[149][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/120 (65%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[150][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/120 (65%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[151][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/120 (65%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[152][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/120 (65%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[153][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 159 bits (402), Expect = 9e-38
Identities = 79/120 (65%), Positives = 98/120 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[154][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 158 bits (400), Expect = 2e-37
Identities = 82/126 (65%), Positives = 91/126 (72%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 106 SVEIVDTAQPIANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 165
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I S NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 166 IFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 225
Query: 49 LLYPFL 32
P L
Sbjct: 226 FTSPLL 231
[155][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 158 bits (399), Expect = 2e-37
Identities = 81/126 (64%), Positives = 91/126 (72%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 214 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 273
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 274 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 333
Query: 49 LLYPFL 32
P L
Sbjct: 334 FTSPLL 339
[156][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 158 bits (399), Expect = 2e-37
Identities = 81/126 (64%), Positives = 91/126 (72%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 186 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 245
Query: 49 LLYPFL 32
P L
Sbjct: 246 FTSPLL 251
[157][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 158 bits (399), Expect = 2e-37
Identities = 81/126 (64%), Positives = 91/126 (72%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 235 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 294
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 295 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 354
Query: 49 LLYPFL 32
P L
Sbjct: 355 FTSPLL 360
[158][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 158 bits (399), Expect = 2e-37
Identities = 81/126 (64%), Positives = 91/126 (72%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 106 SVEIVDTAQPIANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 165
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 166 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 225
Query: 49 LLYPFL 32
P L
Sbjct: 226 FTSPLL 231
[159][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 158 bits (399), Expect = 2e-37
Identities = 83/119 (69%), Positives = 94/119 (78%), Gaps = 3/119 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIFMPVRNA 239
SV IVDNT+HI +TEPI+ C+ LQIER+RGY RI T N D Y IDA+FMPV+N
Sbjct: 126 SVSIVDNTQHIVTLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVFMPVKNV 185
Query: 238 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
NHSIHSY NG+ E+LF EIWTNGSLTPKEAL EASR LI+LFIPFLHAEEEK +FEN
Sbjct: 186 NHSIHSYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEKPHFEN 242
[160][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 158 bits (399), Expect = 2e-37
Identities = 81/126 (64%), Positives = 91/126 (72%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 126 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 186 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 245
Query: 49 LLYPFL 32
P L
Sbjct: 246 FTSPLL 251
[161][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 157 bits (398), Expect = 3e-37
Identities = 78/120 (65%), Positives = 97/120 (80%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+ N+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[162][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 157 bits (397), Expect = 3e-37
Identities = 78/120 (65%), Positives = 97/120 (80%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV +D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKTIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN K
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMNNK 243
[163][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 157 bits (397), Expect = 3e-37
Identities = 81/119 (68%), Positives = 93/119 (78%), Gaps = 3/119 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIFMPVRNA 239
S IVDNT+HI +TEPI CIGLQI+R+RGY +I NF D Y IDA+F+PV+N
Sbjct: 126 SAAIVDNTQHIVTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVFLPVKNV 185
Query: 238 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
NHSIHSY NG+ E+LFLEIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE +FEN
Sbjct: 186 NHSIHSYENGSH--EMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFHFEN 242
[164][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 157 bits (397), Expect = 3e-37
Identities = 81/111 (72%), Positives = 90/111 (81%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA +TEPI IGL+IER+RGY +F DG Y IDA+FMPV+NANHSI
Sbjct: 127 VQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPVQNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 74
HSY GNEKQEILFLEIWTNGSLTPKEAL+EA+R LID FIPF H EEE L
Sbjct: 187 HSY--GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENL 235
[165][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 157 bits (396), Expect = 5e-37
Identities = 80/126 (63%), Positives = 91/126 (72%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 235 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 294
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I + NGN + EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 295 IFACGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 354
Query: 49 LLYPFL 32
P L
Sbjct: 355 FTSPLL 360
[166][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 157 bits (396), Expect = 5e-37
Identities = 77/118 (65%), Positives = 97/118 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMN 56
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ N + MN
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQ--NIDGMN 241
[167][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 156 bits (394), Expect = 8e-37
Identities = 82/126 (65%), Positives = 95/126 (75%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA +TEPI IGL+IER+RGY +F DGSY IDA+FMPV+NANHSI
Sbjct: 127 VQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
HSY GNEKQEILFLEIWTNGSLTPKEAL+E++R LID FIPF EEE L + +
Sbjct: 187 HSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTI 244
Query: 46 LYPFLL 29
P L+
Sbjct: 245 XLPPLI 250
[168][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 155 bits (393), Expect = 1e-36
Identities = 80/126 (63%), Positives = 90/126 (71%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 106 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 165
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
I + NGN K EILFLEIWTNGSLTP EALYEASRNLIDLF+PFLH EEE F+ +
Sbjct: 166 IFACGNGNAKYEILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR 225
Query: 49 LLYPFL 32
P L
Sbjct: 226 FTSPLL 231
[169][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 155 bits (392), Expect = 1e-36
Identities = 79/114 (69%), Positives = 87/114 (76%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV IVD + IAN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+S
Sbjct: 235 SVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYS 294
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 68
I + NGN K EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 295 IFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 348
[170][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 155 bits (392), Expect = 1e-36
Identities = 76/118 (64%), Positives = 96/118 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMN 56
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDL IPFLH EE+ N + MN
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQ--NIDGMN 241
[171][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 155 bits (392), Expect = 1e-36
Identities = 80/111 (72%), Positives = 90/111 (81%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA +TEPI IGL+IER+RGY +F DGSY IDA+FMPV+NANHSI
Sbjct: 127 VQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 74
HSY GNEKQEILFLEIWTNGSLTPKEAL+E++R LID FIPF EEE L
Sbjct: 187 HSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENL 235
[172][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 155 bits (391), Expect = 2e-36
Identities = 73/113 (64%), Positives = 94/113 (83%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 71
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLID FIPFLH EE+ ++
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNID 238
[173][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 154 bits (390), Expect = 2e-36
Identities = 76/118 (64%), Positives = 96/118 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMN 56
IHSY +GNE +E+LFLEIWTNG LTP+EALYEASRNLIDL IPFLH EE+ N + MN
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQ--NIDGMN 241
[174][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 154 bits (388), Expect = 4e-36
Identities = 77/119 (64%), Positives = 90/119 (75%), Gaps = 3/119 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINT---LKNFQDGSYNIDAIFMPVRNA 239
SV IVDNT+HI +TEPI C+GLQIER+RGY + + D Y IDA+FMPV+N
Sbjct: 126 SVAIVDNTQHIVTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVFMPVKNV 185
Query: 238 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
NHSIH+Y NG+ E+LF EIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE + EN
Sbjct: 186 NHSIHAYENGSH--EMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENSHLEN 242
[175][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 152 bits (384), Expect = 1e-35
Identities = 80/123 (65%), Positives = 96/123 (78%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V IVDNT+HIA++TEPI+L I LQIE++R ++ FQDGSY I A+ MPVR+ N+SI
Sbjct: 127 VEIVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPVRHMNYSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKL 47
HS +GN KQEILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EE N EN ++
Sbjct: 187 HS--SGNGKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEG--NLENNQDRI 242
Query: 46 LYP 38
+P
Sbjct: 243 PFP 245
[176][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 151 bits (382), Expect = 2e-35
Identities = 78/119 (65%), Positives = 90/119 (75%), Gaps = 3/119 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIFMPVRNA 239
S IVDNT+HI +TEPI C+GLQIER+RGY +I L N D Y ID++FMPV+N
Sbjct: 126 SATIVDNTQHIVTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVFMPVKNV 185
Query: 238 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
NHSIHSY NG +LFLEIWTNGSLTPKEAL EASR L +LFIPFLHAEE+ +FEN
Sbjct: 186 NHSIHSYENGIHA--MLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQNFHFEN 242
[177][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 150 bits (380), Expect = 3e-35
Identities = 79/129 (61%), Positives = 96/129 (74%), Gaps = 4/129 (3%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA++ E I I QI +DRGYRI + N +DG ++ DA+ MPVRNAN+S
Sbjct: 126 SVRIIDTTQHIASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPVRNANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL----NFEN 62
IHSY NGNE QEILF EIWTNGSL P EALYEASRNLIDLFIPF+ AEE+ + N+
Sbjct: 186 IHSYGNGNEMQEILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNIDGIDNWNG 245
Query: 61 MNIKLLYPF 35
N+ L+PF
Sbjct: 246 YNMS-LFPF 253
[178][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 150 bits (380), Expect = 3e-35
Identities = 72/111 (64%), Positives = 92/111 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T++IA VT+ I L I L+IE+D GYRI DG++ +DA+FMP+RN N+S
Sbjct: 126 SVKIIDTTQYIATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPIRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 77
+HS+ NGNE QEILFLEIWTNGS+TPKEALYEASR+LI+LFIPFLHAE+++
Sbjct: 186 VHSFENGNETQEILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKE 236
[179][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 150 bits (378), Expect = 6e-35
Identities = 71/111 (63%), Positives = 92/111 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T++IA +T+PI L I L+I++D GYRI DG ++IDAIFMP+RNAN+S
Sbjct: 126 SVKIIDTTQYIATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPIRNANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 77
+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLH E+++
Sbjct: 186 VHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKKE 236
[180][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 150 bits (378), Expect = 6e-35
Identities = 72/111 (64%), Positives = 91/111 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T++IA +T+PI L I L+IE+D GYRI DG + IDAIFMP+RNAN+S
Sbjct: 126 SVKIIDTTQYIATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPIRNANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 77
+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLH E+++
Sbjct: 186 VHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKKE 236
[181][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 150 bits (378), Expect = 6e-35
Identities = 75/118 (63%), Positives = 95/118 (80%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T+HIA +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+S
Sbjct: 126 SVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMN 56
IHSY +GNE +E+LFLEIWTNG LTP+EAL EASR LI+LFIPFLH EE+ N + MN
Sbjct: 186 IHSYGSGNEIREVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQ--NIDGMN 241
[182][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 150 bits (378), Expect = 6e-35
Identities = 78/116 (67%), Positives = 89/116 (76%), Gaps = 3/116 (2%)
Frame = -3
Query: 400 IVDNTRHIANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIFMPVRNANHS 230
IVDNT+HI +TEPI C+GLQIER+RGY +I L N D Y IDA+FMPV+N NHS
Sbjct: 129 IVDNTQHIVTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVFMPVKNVNHS 188
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
IHSY NG +LFLEIWTNGSLTPKEAL ASR LI+LFIPFLHAEE+ +FEN
Sbjct: 189 IHSYENGIHA--MLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQNCHFEN 242
[183][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 149 bits (375), Expect = 1e-34
Identities = 69/112 (61%), Positives = 91/112 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV +D+++HIA +T+ I L I ++I++DRGYRI K Q G + IDA+FMP+R AN+S
Sbjct: 126 SVQAIDDSQHIATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPIRKANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 74
+HS+ N + QEILF+EIWT+GSLTPKEALYEASRNLIDLF+PFLH EEE++
Sbjct: 186 VHSFGNNKKFQEILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEI 237
[184][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 147 bits (372), Expect = 3e-34
Identities = 71/112 (63%), Positives = 92/112 (82%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T++IA +T+ I L I L+IE+D GYRI DG + IDAIFMP+RNAN+S
Sbjct: 126 SVKIIDTTQYIATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPIRNANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 74
+HS+ + N+ QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE++++
Sbjct: 186 VHSFEHENKTQEILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEI 237
[185][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 147 bits (370), Expect = 5e-34
Identities = 69/112 (61%), Positives = 91/112 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV ++D T++IA +T+ I L I L+IE+D GYR DG +++DA+F P+RNAN+S
Sbjct: 129 SVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYS 188
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 74
+HS+ N NE QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE+E++
Sbjct: 189 VHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
[186][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 147 bits (370), Expect = 5e-34
Identities = 69/112 (61%), Positives = 91/112 (81%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV ++D T++IA +T+ I L I L+IE+D GYR DG +++DA+F P+RNAN+S
Sbjct: 129 SVEVIDTTQYIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYS 188
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 74
+HS+ N NE QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE+E++
Sbjct: 189 VHSFENKNETQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
[187][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 144 bits (363), Expect = 3e-33
Identities = 75/114 (65%), Positives = 85/114 (74%), Gaps = 4/114 (3%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRIN----TLKNFQDGSYNIDAIFMPVRN 242
S IVDNT+HI +TEPI C+GL+IER RGY I T D +Y IDA+FMPVRN
Sbjct: 126 STAIVDNTQHIFTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAVFMPVRN 185
Query: 241 ANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 80
NHSIHSY G+ E+LFLEIWTNGSLTPKEAL EASR LI+L +PFLHAEEE
Sbjct: 186 VNHSIHSYERGSH--EMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEE 237
[188][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 143 bits (361), Expect = 5e-33
Identities = 68/112 (60%), Positives = 89/112 (79%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D ++IA +T+ IQL I L+IE+D GYRI + + IDAIFMP+RNAN+S
Sbjct: 126 SVKIIDGKQYIATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPIRNANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 74
+HS+ N N+ QE+LF+EIWTNGS+TPK+ALYEASR+LIDLFIPFLHAE ++
Sbjct: 186 VHSFENENKTQEMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREI 237
[189][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 140 bits (352), Expect = 6e-32
Identities = 76/116 (65%), Positives = 85/116 (73%), Gaps = 6/116 (5%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRIN----TLKNFQDGSYNI--DAIFMPV 248
S IVDNT+HI +TEPI C+ L+IER RGY I T D Y I DA+FMPV
Sbjct: 126 STAIVDNTQHIVTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPIDAVFMPV 185
Query: 247 RNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 80
RN NHSI+SY G+ +EILFLEIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE
Sbjct: 186 RNVNHSIYSYKRGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEE 239
[190][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 138 bits (347), Expect = 2e-31
Identities = 63/113 (55%), Positives = 88/113 (77%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV ++D T+HIA +T+ + I L I +DRGYRI ++DG++ ++A F P+RNAN+S
Sbjct: 126 SVEVIDATQHIATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 71
+HS+ N EKQEILF+E+WTNGSLTPKEAL EAS++LI+LFIP LH ++E+ N
Sbjct: 186 VHSFENEKEKQEILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKEREN 238
[191][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 136 bits (343), Expect = 6e-31
Identities = 63/106 (59%), Positives = 88/106 (83%)
Frame = -3
Query: 385 RHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGN 206
++IA + + I L I L IE+DRGYRI L+ +Q+G + +DA+FMP+RNAN+S+HS+ +
Sbjct: 134 QYIATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNANYSVHSFESEK 193
Query: 205 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 68
+ +EILFLEIWT+GSLTPKEALYEASRNLIDLFIP +++E+++ NF
Sbjct: 194 KIKEILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNF 239
[192][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 134 bits (337), Expect = 3e-30
Identities = 61/110 (55%), Positives = 87/110 (79%)
Frame = -3
Query: 400 IVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHS 221
++DNT+++A +T I L I L IE+DRGYR+ + +++G + IDA+FMP+RNAN+S+HS
Sbjct: 130 VIDNTQYVATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRNANYSVHS 189
Query: 220 YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 71
+ + + +EIL LEIWTNGSLTP++ALYEASRNLIDLFIP ++ E+ N
Sbjct: 190 FGSREKTKEILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMNPGGEEKN 239
[193][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 134 bits (336), Expect = 4e-30
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 10/126 (7%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----------YNIDAI 260
SV I+D T+HIAN+ + I L I LQIE+ RGY I N+ + IDA
Sbjct: 126 SVRIIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVFPIDAA 185
Query: 259 FMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 80
F PV+N N+SIHSY + NE QEILFLEIWTNG L PKEALYEASRNLID F+PFL+A+EE
Sbjct: 186 FAPVQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPFLNAKEE 245
Query: 79 KLNFEN 62
+ N
Sbjct: 246 NSDGTN 251
[194][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 132 bits (331), Expect = 2e-29
Identities = 69/124 (55%), Positives = 90/124 (72%), Gaps = 4/124 (3%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D ++HIA +T I L + L+IERD GYR LK Q G + IDA+F P+RNAN+S
Sbjct: 126 SVKIIDASQHIATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPIRNANYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE----KLNFEN 62
IHS+ + N+ +EILFLE+WTNGSLTP AL EASR+LIDLFI FL+ E+E ++
Sbjct: 186 IHSFESNNKVREILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIKEIENNE 245
Query: 61 MNIK 50
+NIK
Sbjct: 246 LNIK 249
[195][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 130 bits (328), Expect = 3e-29
Identities = 59/117 (50%), Positives = 89/117 (76%), Gaps = 1/117 (0%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV ++D++++I +T+PI + I L IE D GYRI +L ++DG + +DA+FMPVRN N+S
Sbjct: 126 SVKVIDDSQYIVTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFEN 62
+H + +G E +EILF+E+WTNGSLTP EA+ +AS++ IDL PFLH + E + +FE+
Sbjct: 186 VHPFGSGKEMREILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHEDIPDFES 242
[196][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 129 bits (323), Expect = 1e-28
Identities = 61/117 (52%), Positives = 87/117 (74%), Gaps = 1/117 (0%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D++++I +T+PI + I +IE+D GYRI ++DG + +DA+ MPVRN N+S
Sbjct: 126 SVKIIDDSQYIVTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRNVNYS 185
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFEN 62
+H + +G E +EI F+EIWTNGS TP EAL EAS+NLIDL IPFLH + E + +FE+
Sbjct: 186 VHPFGSGREMREISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHEDVPHFED 242
[197][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 125 bits (313), Expect = 2e-27
Identities = 58/135 (42%), Positives = 99/135 (73%), Gaps = 5/135 (3%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV ++D +HIA +T+ ++L I L+IE+D GYR + ++DG++ +DA+F P+R+ N+S
Sbjct: 129 SVEVIDPMQHIATITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSVNYS 188
Query: 229 IHSYVNGNEK--QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMN 56
IH + + ++ +E+L EIW+NGS+TP+EA+YEASR+ I+LF+PFL AE+EK +F+ +
Sbjct: 189 IHCFESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKEKEDFKGED 248
Query: 55 I---KLLYPFLLVMI 20
I L+P + +++
Sbjct: 249 IHESNALHPSVSIVV 263
[198][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 123 bits (309), Expect = 6e-27
Identities = 60/113 (53%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
S+ + D T+HIA +T+ + L I L +E+ GYR+ DG + ID++FMPVRNAN+S
Sbjct: 238 SLEVTDPTQHIAYLTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANYS 297
Query: 229 IHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 74
+HSY + + QEILFLEIWTNGS+TP+EAL+EA+R LIDLF+PFLH +++++
Sbjct: 298 VHSYESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKKEV 350
[199][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 122 bits (307), Expect = 1e-26
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
V +DN+++IA +T+PI L I L+IE+D GYRI L G + IDA+FMPVRN N+SI
Sbjct: 128 VEAIDNSQYIATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRNVNYSI 187
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FEN 62
H + +G QEILF+EIWTNGSLTP EAL +AS L+DL FL+ ++ FEN
Sbjct: 188 HLFGSGRATQEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFEN 243
[200][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 113 bits (283), Expect = 6e-24
Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFMPVRNAN 236
S+ I+D T+HIA++T+ + + L IER++GY I + + ++G + IDA MPVRN N
Sbjct: 127 SIKIIDGTQHIASLTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPCMPVRNVN 186
Query: 235 HSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 80
SIHSY + N+ +E+L EIWTNG LTP+EA YEA LIDL +P LH EE+
Sbjct: 187 FSIHSYKSENDIREMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED 238
[201][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 112 bits (279), Expect = 2e-23
Identities = 53/84 (63%), Positives = 66/84 (78%)
Frame = -3
Query: 379 IANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEK 200
IA + +PI LCIGLQI+R+ Y + NFQDGSY ID +FM V+NANH+IH Y N NE+
Sbjct: 65 IARLKKPIDLCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNANHNIHFYGNVNER 124
Query: 199 QEILFLEIWTNGSLTPKEALYEAS 128
QEILFL++WTN +LTPKEA +EAS
Sbjct: 125 QEILFLKLWTNKNLTPKEAFHEAS 148
[202][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 106 bits (264), Expect = 9e-22
Identities = 51/113 (45%), Positives = 76/113 (67%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
S+ I+D+T+HIA++T+ I + L+IE+ + Y I +K +D + ID + +PV+N N S
Sbjct: 127 SIQIIDDTQHIASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFS 186
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 71
IHSY + + QE+L EIWTNG LTP+E +YEA +L+DL IP L E+ N
Sbjct: 187 IHSYKSSDNIQEMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQNIKN 239
[203][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 103 bits (257), Expect = 6e-21
Identities = 59/133 (44%), Positives = 88/133 (66%), Gaps = 7/133 (5%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
S+V+ D +++IA VT I + +++E+D GYRI +G + ID++FMPV AN+S
Sbjct: 227 SLVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYS 286
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-------EEKLN 71
+HS+ + +EILFLEI+TNGS++P+EAL EA+R+LIDL +P L +E EK N
Sbjct: 287 VHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESEVIEVTNTTEKEN 346
Query: 70 FENMNIKLLYPFL 32
+ NI +L FL
Sbjct: 347 -GSRNISMLSSFL 358
[204][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 103 bits (257), Expect = 6e-21
Identities = 59/133 (44%), Positives = 88/133 (66%), Gaps = 7/133 (5%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
S+V+ D +++IA VT I + +++E+D GYRI +G + ID++FMPV AN+S
Sbjct: 314 SLVVPDPSQNIALVTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYS 373
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-------EEKLN 71
+HS+ + +EILFLEI+TNGS++P+EAL EA+R+LIDL +P L +E EK N
Sbjct: 374 VHSFEVEDVTREILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESEVIEVTNTTEKEN 433
Query: 70 FENMNIKLLYPFL 32
+ NI +L FL
Sbjct: 434 -GSRNISMLSSFL 445
[205][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 102 bits (255), Expect = 1e-20
Identities = 45/61 (73%), Positives = 56/61 (91%)
Frame = -3
Query: 259 FMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 80
FMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+L DLFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
Query: 79 K 77
+
Sbjct: 61 E 61
[206][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 102 bits (254), Expect = 1e-20
Identities = 47/112 (41%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
+ I+D+ + IA++TEPI + L IE+ G+R+ S++IDAIFMP+RN N+SI
Sbjct: 124 IEILDSNQIIAHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIRNVNYSI 183
Query: 226 HSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 74
H G+ K E+L LEIWTNGS+TPKEA ++AS ++++F+ ++ + ++
Sbjct: 184 HPVEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFLSLSNSSDNQI 235
[207][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 101 bits (252), Expect = 2e-20
Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 2/108 (1%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV +D T+HIA +T I IGL++ER G+R + +Q GS DA+FMP+R+AN+S
Sbjct: 127 SVGTMDPTQHIATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFMPIRHANYS 186
Query: 229 IHSYVN--GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH 92
IH + G +E+L LE T+GS TP+EA+YEASRNL +LF PF H
Sbjct: 187 IHRLGSHGGGIMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[208][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 98.6 bits (244), Expect = 2e-19
Identities = 51/110 (46%), Positives = 71/110 (64%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
++ I + HIA +T+PI+ + L I + RGY I + QDG + +DA+F PVRN N S
Sbjct: 128 NITISNPYHHIATITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNFS 187
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 80
IH N E+QE L LEIWTNG++TP +AL + S NLI LF+P E++
Sbjct: 188 IH---NLAEQQEALILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDD 234
[209][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 96.3 bits (238), Expect = 1e-18
Identities = 42/111 (37%), Positives = 74/111 (66%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSI 227
+ IV+ ++IA V +PI + + I++ +GY + + + G + +D +F+P+R+ N+SI
Sbjct: 127 IKIVNPDQYIATVNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSVNYSI 186
Query: 226 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 74
HS+ + +E L +E+WTNGS+ PKEA+ EAS NL++LF P + E ++L
Sbjct: 187 HSFEDEKATKEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQEYQQL 237
[210][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 90.9 bits (224), Expect = 4e-17
Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYR-INTLKNFQDGSYNIDAIFMPVRNANHS 230
V +VDNT++IA + P + I + +E + +NT+ + G + +DA PVRN N+S
Sbjct: 124 VQVVDNTQYIARLEMPTSIEIHITLENTKTCTSLNTMPTTK-GRFILDAALKPVRNMNYS 182
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIK 50
IHS G+ +QE+L LE+WTNGSLTP+E + +AS+NL DL P L E +N++ K
Sbjct: 183 IHSLGEGDMRQEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKVERYFQAKQNIHKK 242
Query: 49 LLY 41
++
Sbjct: 243 RMF 245
[211][TOP]
>UniRef100_B9IJB3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IJB3_POPTR
Length = 73
Score = 86.7 bits (213), Expect = 8e-16
Identities = 40/58 (68%), Positives = 48/58 (82%)
Frame = -3
Query: 364 EPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEI 191
EPI L IGL+IER+ GY + KNFQDGSY+IDAIFM VRNANH++HSY NGNEK ++
Sbjct: 11 EPIDLHIGLEIERNHGYCMKPPKNFQDGSYSIDAIFMHVRNANHNVHSYGNGNEKSQL 68
[212][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 84.3 bits (207), Expect = 4e-15
Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 5/132 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYR---INTLKNFQDGSYNIDAIFMPVRNAN 236
+ IVD T+HIA++T+PI L + L+IE++ G I+ + + + +MPVR+
Sbjct: 131 IQIVDGTQHIASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPTEIFYMPVRSVT 190
Query: 235 HSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
++++ Y + + +IL E+WTNG LTPKEALYEA LIDL IP L + L+ E
Sbjct: 191 YNVYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLL--DVPLLHVEG 248
Query: 61 MNIKLLYPFLLV 26
+K P +V
Sbjct: 249 SGVKESIPLPIV 260
[213][TOP]
>UniRef100_C5Z5P0 Putative uncharacterized protein Sb10g023655 (Fragment) n=1
Tax=Sorghum bicolor RepID=C5Z5P0_SORBI
Length = 66
Score = 83.2 bits (204), Expect = 8e-15
Identities = 39/52 (75%), Positives = 42/52 (80%)
Frame = -3
Query: 187 FLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENMNIKLLYPFL 32
FLEIWTNGSLTPKEALYE SRNLIDLF+PF+H EEE NFE +L PFL
Sbjct: 7 FLEIWTNGSLTPKEALYETSRNLIDLFLPFIHTEEEGTNFEENKNRLTPPFL 58
[214][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 82.0 bits (201), Expect = 2e-14
Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS--YNIDAIFMPVRNANH 233
V I+ T+++A V E L + +IE+ RGY+I K ++ IDAIFMPVR N+
Sbjct: 118 VEIIHGTQYVATVAENAILEMEFKIEKGRGYKIIDKKQTENSIDFLPIDAIFMPVRKVNY 177
Query: 232 SIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN 62
+ ++ +E +E L LEIW NGS+TP++++ +A+ L++LF PF +K+NFEN
Sbjct: 178 MVEEIFLRNSEIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPF-----KKINFEN 230
[215][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 79.7 bits (195), Expect = 9e-14
Identities = 48/112 (42%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
S++ VD + IA + QLCI L I + ++ K G + IDA F PV+ AN S
Sbjct: 134 SILAVDPDQSIATLLNETQLCIELFIRQGIAKQLTRTKKNHQGFF-IDANFTPVQKANFS 192
Query: 229 IHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF----IPFLHAE 86
IHS + Q++L LEIWTN +LTP EALY+A +L++LF P LH E
Sbjct: 193 IHSVGDPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[216][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 77.4 bits (189), Expect = 5e-13
Identities = 42/106 (39%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V +VD ++IA ++ L + Q+E+ GYR + + + IDA+FMPVR N
Sbjct: 118 VEVVDKNQYIATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPVRKVN 177
Query: 235 HSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+++ + V G+ +++ L L+IWTNGSLTP+EAL +A+ L+DLF+P
Sbjct: 178 YTVEDARVGGSLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVP 223
[217][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 77.0 bits (188), Expect = 6e-13
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 6/124 (4%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V IVD +++A + E +L + ++E+ +GYR + S + ID+IFMPV N
Sbjct: 118 VEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPVTKVN 177
Query: 235 HSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF--LHAEEEKLNFE 65
+S+ + + ++ L LEIWTNGS+ PKEAL +A+ L++LF P L+A E NF+
Sbjct: 178 YSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLKDLNALESSSNFD 237
Query: 64 NMNI 53
+ I
Sbjct: 238 DQEI 241
[218][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 77.0 bits (188), Expect = 6e-13
Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 6/114 (5%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN-----IDAIFMPVRN 242
V IVD ++++A + E +L + +IE+ +GYR ++ +D S + ID++FMPV
Sbjct: 118 VEIVDPSQYVATLAEGSKLEMEFRIEKGKGYR--AIERGKDDSTSLDFLQIDSVFMPVTK 175
Query: 241 ANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 83
N+S+ V+G ++ L +EIWTNGS+ PKEAL EA+ ++DLF P E
Sbjct: 176 VNYSVEDVRVDGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[219][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 76.3 bits (186), Expect = 1e-12
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 6/124 (4%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V IVD +++A + E +L + ++E+ +GYR + S + ID+IFMPV N
Sbjct: 118 VEIVDRNQYVATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPVTKVN 177
Query: 235 HSIHSYVN-GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF--LHAEEEKLNFE 65
+S+ + + ++ L LEIWTNGS+ PKEAL +A+ L++LF P L+A E NF+
Sbjct: 178 YSVEDIRSESGQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLKDLNALESSGNFD 237
Query: 64 NMNI 53
+ I
Sbjct: 238 DQEI 241
[220][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 75.9 bits (185), Expect = 1e-12
Identities = 36/69 (52%), Positives = 50/69 (72%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
SV I+D T++IA +T+ I L I +IE+D GYRI K DG + +DA+FMP+RNAN+S
Sbjct: 126 SVKIIDTTQYIATLTKAIHLDIESEIEKDCGYRIQDSKKSTDGLFFVDAVFMPIRNANYS 185
Query: 229 IHSYVNGNE 203
IHS+ N N+
Sbjct: 186 IHSFENKNK 194
[221][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 75.5 bits (184), Expect = 2e-12
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V ++D T+++A + E +L + +IER +GYR + S + ID+IFMPVR N
Sbjct: 118 VEVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVN 177
Query: 235 HSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 178 YSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[222][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 75.5 bits (184), Expect = 2e-12
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V ++D T+++A + E +L + +IER +GYR + S + ID+IFMPVR N
Sbjct: 118 VEVIDPTQYVATIAEGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVN 177
Query: 235 HSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+S+ +G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 178 YSVEEVRADGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[223][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 74.3 bits (181), Expect = 4e-12
Identities = 40/114 (35%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN-----IDAIFMPVRN 242
+ +VD ++++A +++ +L + ++E+ +GYR ++ +D + + ID++FMPV
Sbjct: 118 IEVVDPSQYVATLSDGSKLEMEFRVEKGKGYR--AIERGKDDTTSLDFLQIDSVFMPVTK 175
Query: 241 ANHSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 83
N+S+ V+G ++ L LEIWTNGS+ PKEAL EA+ ++DLF P E
Sbjct: 176 VNYSVEDVRVDGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNE 229
[224][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 74.3 bits (181), Expect = 4e-12
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 6/108 (5%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNA 239
V +VD T+++A +TE +L + +IE GY+ + DG+ IDA+FMPV
Sbjct: 120 VEVVDPTQYVATLTEGSKLEMEFRIETGTGYK-GVERGKDDGTSLDFLEIDAVFMPVTKV 178
Query: 238 NHSIHSYVNGN--EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
N+ + + G E Q+ L LEIWTNGS PKEAL EA+ ++DLF P
Sbjct: 179 NYIVED-IRGEHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[225][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 74.3 bits (181), Expect = 4e-12
Identities = 39/105 (37%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V ++D T+++A + + +L + +IER +GYR + S + ID++FMPVR N
Sbjct: 118 VEVIDPTQYVATIADGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSVFMPVRKVN 177
Query: 235 HSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+S+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 178 YSVEEARGDGSLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 222
[226][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 73.6 bits (179), Expect = 7e-12
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIFMPVRNAN 236
V +++ HIA + E L + I R RGYR + K+ ID++FMPVR N
Sbjct: 136 VEVINPRHHIATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDFLQIDSVFMPVRKVN 195
Query: 235 HSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+++ + G +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 196 YTVEAARVGQSLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSP 241
[227][TOP]
>UniRef100_Q8DML0 DNA-directed RNA polymerase subunit alpha n=1
Tax=Thermosynechococcus elongatus BP-1 RepID=RPOA_THEEB
Length = 321
Score = 73.2 bits (178), Expect = 9e-12
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 14/122 (11%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSY-----NIDAIFMPVRN 242
V +V+ +IA + L + +IE+DRGYR +++ +D +DA+FMPVR
Sbjct: 121 VEVVNPNHYIATLMPGATLEMEFKIEKDRGYR--SVERVRDDRLALDYLQLDAVFMPVRR 178
Query: 241 ANHSIHSYVNGNEK-----QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF----LHA 89
N+++ S + + Q+ L LEIWTNGSLTP++AL +A+ L+DLF P LH
Sbjct: 179 VNYTVDSVRSAGAEGDRQLQDYLKLEIWTNGSLTPQDALNQAATILVDLFSPLKEVPLHT 238
Query: 88 EE 83
E
Sbjct: 239 SE 240
[228][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 73.2 bits (178), Expect = 9e-12
Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNA 239
V +V +IA + E QL + QIER +GYR + +DG+ +IDAIFMPVR
Sbjct: 118 VQVVHPRHYIATLAEDGQLEMEFQIERGKGYRAIE-RGSEDGAAIDYLSIDAIFMPVRKV 176
Query: 238 NHSIHSYVNG-NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
N ++ S + N +Q+ L LEIWT+GSL+P+EAL +A++ L+D P
Sbjct: 177 NWTVESERSAANVEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRP 223
[229][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 72.8 bits (177), Expect = 1e-11
Identities = 41/111 (36%), Positives = 69/111 (62%), Gaps = 4/111 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V VD ++IA + + +L + +IER +GYR + S + +DA+FMPV N
Sbjct: 118 VEFVDPGQYIATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVFMPVTKVN 177
Query: 235 HSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 86
+S+ + V+G+ +++ L L++WTNGS++P+EAL +A+ L+DLF P E
Sbjct: 178 YSVEDTRVDGSLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[230][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 72.8 bits (177), Expect = 1e-11
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHS 230
S+ I+ +H A VT I+ G ++E GYR + +Q GS DA+ MP+RNAN+S
Sbjct: 125 SIGIIYPAQHAATVTRKIRSSTGSRVEGGCGYRRRNMVEYQKGSPPPDAVSMPIRNANYS 184
Query: 229 IHSYV--NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
IH +G +E+ E T+GS TP EA YEASR+ +LF P
Sbjct: 185 IHRLESHSGGIMKEMPPPEARTDGSPTPGEATYEASRDSANLFSP 229
[231][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 72.4 bits (176), Expect = 1e-11
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V ++D T+++A + E +L + +IE+ +GYR + S + ID+IFMPVR N
Sbjct: 118 VEVIDPTQYVATIAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSIFMPVRKVN 177
Query: 235 HSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+S+ S G ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 178 YSVEESRGEGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[232][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 72.4 bits (176), Expect = 1e-11
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V ++D ++IA + E +L + ++ER GYR+ ++ S + ID++FMPV N
Sbjct: 118 VEVIDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKVN 177
Query: 235 HSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 83
+++ +G ++ L L+IWTNGS+ P+EAL EAS + +LFIP E
Sbjct: 178 YTVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229
[233][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 72.4 bits (176), Expect = 1e-11
Identities = 50/127 (39%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIFMPVRNAN 236
V IV+ +IA +T L I +IE GY++ K QD IDAIFMPV+ +
Sbjct: 118 VEIVNPNHYIATITTSNVLEIEFKIESGTGYKLAGQTFCKKSQD-YLQIDAIFMPVQKVD 176
Query: 235 HSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENM 59
I + Y N N+ E LFL+IWTNGS++P+EA+ ASR +I F L + + E+
Sbjct: 177 FKIENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLLENKLPQETKESE 236
Query: 58 NIKLLYP 38
N L P
Sbjct: 237 NKTLSAP 243
[234][TOP]
>UniRef100_B4WHD8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7335 RepID=B4WHD8_9SYNE
Length = 315
Score = 72.0 bits (175), Expect = 2e-11
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V ++ R+IA+V +L + +IER +GY+ + G IDA+FMPVR N
Sbjct: 118 VELISTDRYIASVAAGHKLEMEFRIERGKGYKAIDRSREETGGVEFMQIDAVFMPVRKVN 177
Query: 235 HSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+S+ ++++ ++ L +EIWTNGSLT ++A+ EA+ L+D+F P
Sbjct: 178 YSVENFIDPEGFPKDRLVMEIWTNGSLTAQQAMSEAAALLVDMFNP 223
[235][TOP]
>UniRef100_B8HMS8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7425 RepID=B8HMS8_CYAP4
Length = 314
Score = 70.1 bits (170), Expect = 7e-11
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V +++ +IA ++ L + +IE+ +GYR + S + IDAIFMPVR N
Sbjct: 117 VEVINLDHYIATLSADATLEMEFKIEQGKGYRAIERGKDESASLDFLQIDAIFMPVRKVN 176
Query: 235 HSIHSYVNGN-EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+++ +G +++ L LEIWTNGSLTP+EAL + + L+DLF P
Sbjct: 177 YTVEDARSGGLVEKDRLVLEIWTNGSLTPQEALNQGASILVDLFNP 222
[236][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 70.1 bits (170), Expect = 7e-11
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNA 239
V IV+ T+++A ++ L + +IE+ +GY KN + + IDAI+MPVR
Sbjct: 118 VEIVNPTQYVATLSSDATLEMEFRIEQGKGYHA-VGKNRDEAAALDFLEIDAIYMPVRRV 176
Query: 238 NHSIH-SYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHA 89
N+ + + V G +++ L L+IWTNG+LTP+E+L +A+ L+DLF P A
Sbjct: 177 NYEVEDARVGGALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDA 227
[237][TOP]
>UniRef100_Q6B8X4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gracilaria
tenuistipitata var. liui RepID=RPOA_GRATL
Length = 314
Score = 70.1 bits (170), Expect = 7e-11
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
++I+D ++IA + + +IE+ GY++ K F S + IDA+FMPV N
Sbjct: 118 ILIIDPQQYIATICNNTIFEMEFRIEKGSGYKLVN-KGFDKKSIDFLQIDAVFMPVTKFN 176
Query: 235 HSIHSY-VNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENM 59
+++ ++ QE LFLE+WTNGSL+P+EA+ E ++ L LF P + LNF+N
Sbjct: 177 YTVEEKKISPILIQEKLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLTN-----LNFQNA 231
Query: 58 N 56
N
Sbjct: 232 N 232
[238][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 69.7 bits (169), Expect = 1e-10
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFMPVRN 242
V +V+ ++IA ++ L + QIE+ GYR + +D S IDAIFMPVR
Sbjct: 118 VEVVNKNQYIATLSPGATLEMECQIEKGTGYR--AVDRHRDDSAALDFLQIDAIFMPVRK 175
Query: 241 ANHSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLF 107
N+++ +G +++ L LEIWT+GSLTP+EA+ +A+ L+DLF
Sbjct: 176 VNYTVEDARDGGSLEKDRLTLEIWTSGSLTPQEAISQAAAILVDLF 221
[239][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 69.7 bits (169), Expect = 1e-10
Identities = 34/106 (32%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIFMPVRNA 239
S+ +VD ++IA ++ + L + +E +GY++ K FQ IDA+FMPV
Sbjct: 122 SIELVDPDQYIATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFMPVTKV 181
Query: 238 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
N+++ G+ QE + +E+WTNGS+ ++A+ + +I+LF P
Sbjct: 182 NYTVEENYGGDRSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSP 227
[240][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 69.3 bits (168), Expect = 1e-10
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V +V+ T+ IA +TE +L + +IE+ GY + + + + IDA+FMPV N
Sbjct: 118 VEVVNPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSEEPAALDFLQIDAVFMPVTKVN 177
Query: 235 HSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+S+ S + G E + + L LEIWTNGS PKEAL +A+ L+DLF P
Sbjct: 178 YSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[241][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 69.3 bits (168), Expect = 1e-10
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIFMPVRNAN 236
V +++ HIA + E L + I R GYR + K ID++FMPVR N
Sbjct: 138 VEVINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDFLQIDSVFMPVRKVN 197
Query: 235 HSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+++ + G +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 198 YAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAP 243
[242][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 69.3 bits (168), Expect = 1e-10
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNA 239
+ +VD ++IA ++ L + L++E+ GY++ ++ F S ID+IFMPV+
Sbjct: 122 ITVVDPCQYIATISGNDYLEMELKVEKSSGYKL--VETFSKKSPLDFLPIDSIFMPVKKV 179
Query: 238 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
N+ + ++ E L LE+WTNGSL+P++++ AS NL+ LF P
Sbjct: 180 NYYVEEILDSKVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[243][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 68.9 bits (167), Expect = 2e-10
Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNA 239
V +VD T++IA + + +L + +IE+ + YR +N + + IDA+FMPV
Sbjct: 118 VEVVDPTQYIATLADGAKLEMEFRIEKGKSYRA-VQRNRDEATALDFLQIDAVFMPVTKV 176
Query: 238 NHSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
N+S+ S + G+ ++ L LEIWTNGS+ P+EAL +A+ ++LF P
Sbjct: 177 NYSVDSIHSEGDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNP 223
[244][TOP]
>UniRef100_A0ZG51 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nodularia
spumigena CCY9414 RepID=A0ZG51_NODSP
Length = 315
Score = 68.6 bits (166), Expect = 2e-10
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V ++D T+++A + E +L + +IE+ +GYR + S + ID++FMPVR N
Sbjct: 118 VEVIDQTQYVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSVFMPVRKVN 177
Query: 235 HSIHSYVNGNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+S+ + ++ L LE+WTNGS++P+EAL A+ L++LF P
Sbjct: 178 YSVEEARGESSIPKDRLLLEVWTNGSISPQEALSSAAGILVELFNP 223
[245][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 67.8 bits (164), Expect = 4e-10
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V +++ T+ IA +TE +L + +IE+ GY + + + + IDA+FMPV N
Sbjct: 118 VEVINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVN 177
Query: 235 HSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+S+ S + G E + + L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 178 YSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[246][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 67.8 bits (164), Expect = 4e-10
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNAN 236
V +++ T+ IA +TE +L + +IE+ GY + + + + IDA+FMPV N
Sbjct: 118 VEVINPTQPIATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVN 177
Query: 235 HSIHSYVNGNEKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 101
+S+ S + G E + + L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 178 YSVES-IRGEEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[247][TOP]
>UniRef100_Q6J225 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassiosira sp.
Cleve BA153110 RepID=Q6J225_9STRA
Length = 300
Score = 67.8 bits (164), Expect = 4e-10
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = -3
Query: 406 VVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNI---DAIFMPVRNAN 236
V I++ +IA ++ L I +IE YR+ + F D N DAIFMP + +
Sbjct: 120 VEIINPNHYIATLSSSHILEIEFKIESGHDYRLAN-ETFSDKLSNFIETDAIFMPDQKDD 178
Query: 235 HSIHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENM 59
+ + Y N N +E +FL++WTNGS++P++A++ AS +IDL F E K+N E
Sbjct: 179 FKVENVYDNSNNVKERVFLDVWTNGSISPEQAIFSASNLIIDL---FKSITEHKINQEKE 235
Query: 58 NIK 50
+IK
Sbjct: 236 SIK 238
[248][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 67.8 bits (164), Expect = 4e-10
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRINTL---KNFQDGSYNIDAIFMPVRNA 239
S+ +VD ++IA ++ L + I +GY++ KN S +DAIFMP+
Sbjct: 122 SIEVVDGGQYIATLSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDAIFMPIHKV 181
Query: 238 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 80
N+ + E + LEIWTNGS++P++AL + +IDLF P H E
Sbjct: 182 NYMVEQDHTSKFLTERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSSE 234
[249][TOP]
>UniRef100_Q6J223 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cylindrotheca
fusiformis RepID=Q6J223_CYLFU
Length = 291
Score = 67.4 bits (163), Expect = 5e-10
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Frame = -3
Query: 400 IVDNTRHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHS 230
IV+ ++ ++ L I + E GY++ T + F D S N +D IFMPV+ N
Sbjct: 112 IVNPNHYLMTISTSNVLEIEFKFEYGTGYKL-TSQAFLDESDNYLQLDTIFMPVQKVNFK 170
Query: 229 IHS-YVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 77
I + Y N N E +FL+IWTNGS++P EAL A++ IDLF L +E K
Sbjct: 171 IENVYDNNNNITEQVFLDIWTNGSISPNEALKSAAQITIDLFELLLKNKETK 222
[250][TOP]
>UniRef100_C2CJX8 DNA-directed RNA polymerase n=1 Tax=Anaerococcus tetradius ATCC
35098 RepID=C2CJX8_9FIRM
Length = 318
Score = 67.0 bits (162), Expect = 6e-10
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 15/134 (11%)
Frame = -3
Query: 409 SVVIVDNTRHIANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIFMPVRNA 239
SV I + +IA V E +L I + + +GYRI N ++ G+ ID+ F PV+
Sbjct: 117 SVEIANPDHYIATVNEKSRLFIAMDVTDGKGYRISEENKKESDPIGAIAIDSSFTPVKKV 176
Query: 238 NHSI-HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID-----------LFIPFL 95
N ++ ++ V + + L +E+WTNG++TP+EAL E S LID F P +
Sbjct: 177 NFTVENTRVGESTDYDKLIMEVWTNGTITPQEALAEGSSILIDNFSFFTELPNQQFPPEV 236
Query: 94 HAEEEKLNFENMNI 53
EE++N E N+
Sbjct: 237 EEVEEEVNDEEENL 250