[UP]
[1][TOP]
>UniRef100_Q2HVE2 RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold n=1
Tax=Medicago truncatula RepID=Q2HVE2_MEDTR
Length = 729
Score = 48.9 bits (115), Expect(2) = 9e-10
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Frame = +3
Query: 252 W*VWKWRNNMVFE------DSPWSVDEAWRKLGHEHDEFITFSDGDAGDPGSWLSSRWQP 413
W +W WRN +FE +P V + + + ++ + + S + W
Sbjct: 575 WYLWNWRNKSIFEIGFQRPSNPTLVIQKFTREIEDNTKLVHKSSHQK----ETIYIGWMR 630
Query: 414 PRQGTVKLNVDGSGREQDRCMGAGGLIRDDQGKWL 518
P G VKLN DG+ + G GGL+RD G+W+
Sbjct: 631 PPFGWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWI 665
Score = 37.7 bits (86), Expect(2) = 9e-10
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 82 CPAPEEDI*HCLRDCPHSQEIWLRLGAWAW-TNLGVGDHRSWI 207
C +E + H LRDC HS ++WLRL + TN D R W+
Sbjct: 508 CAREDETVIHVLRDCVHSTQVWLRLIPHNYITNFFSFDCREWV 550
[2][TOP]
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=O82276_ARATH
Length = 1231
Score = 48.9 bits (115), Expect(2) = 3e-08
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +3
Query: 246 GVW*VWKWRNNMVFEDSPWSVDEAWRKLGHEHDEFITFSDGDAGDPGSWLSS----RWQP 413
G+W WKWR VF + D + + +E G G+ + + RWQ
Sbjct: 1007 GIWWAWKWRCCDVFGERKICRDRL-KFIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQV 1065
Query: 414 PRQGTVKLNVDGSGREQDRCMGAGGLIRDDQGKWL 518
P G VK+ DG+ R AGG IR+ QG+WL
Sbjct: 1066 PSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWL 1100
Score = 32.7 bits (73), Expect(2) = 3e-08
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 82 CPAPEEDI*HCLRDCPHSQEIWLRL 156
C EE I H LRDCP + IW RL
Sbjct: 947 CNGAEETILHVLRDCPAMEPIWRRL 971
[3][TOP]
>UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like n=1 Tax=Arabidopsis
thaliana RepID=Q9FG26_ARATH
Length = 676
Score = 45.4 bits (106), Expect(2) = 2e-06
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +3
Query: 249 VW*VWKWRNNMVFEDSPWSVDEA--WRKLGHEHDEFITFSDGDAGDPGSWLSSR---WQP 413
VW WKWR VF + D + E + ++GDA + L R W+
Sbjct: 453 VWWGWKWRCGYVFGEDSRCRDRVKFLKSAVAEVEAAHLAANGDARE--DVLVERMIAWRK 510
Query: 414 PRQGTVKLNVDGSGREQDRCMGAGGLIRDDQGKWL 518
P +G V +N DG+ AGG+IRD+ G WL
Sbjct: 511 PAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWL 545
Score = 30.0 bits (66), Expect(2) = 2e-06
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 82 CPAPEEDI*HCLRDCPHSQEIWLRL 156
C E + H LRDCP IW+R+
Sbjct: 388 CKGASESLIHVLRDCPAMMGIWMRV 412