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[1][TOP]
>UniRef100_B9RP51 RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis
RepID=B9RP51_RICCO
Length = 1203
Score = 189 bits (480), Expect = 1e-46
Identities = 88/140 (62%), Positives = 109/140 (77%)
Frame = +2
Query: 137 MDLGGSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNV 316
M+ EKE+V TQVS GGFD +V A DL +L+N IG V+RCRLKTSWTPPESYP F +
Sbjct: 1 METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60
Query: 317 ADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFL 496
DTA+++R D Y++VEPHAFVHFA P+SAT A +A+G C+L + G+P+KV GP+NP+ L
Sbjct: 61 TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120
Query: 497 NQRRRKETPFKLSDVLVEIG 556
NQRRR PFKLSDV VEIG
Sbjct: 121 NQRRRTTIPFKLSDVHVEIG 140
[2][TOP]
>UniRef100_B9HA49 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9HA49_POPTR
Length = 1198
Score = 189 bits (480), Expect = 1e-46
Identities = 91/140 (65%), Positives = 107/140 (76%)
Frame = +2
Query: 137 MDLGGSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNV 316
M+ GS KE+V TQVS+GGFD V A DL E+LE IGLV+RCRLKTSWTPPESYP F +
Sbjct: 1 METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60
Query: 317 ADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFL 496
D + RT+DY++VEPHAFVHFALP+SAT A+DA+ C+L K LK GP+NP+ L
Sbjct: 61 TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120
Query: 497 NQRRRKETPFKLSDVLVEIG 556
NQRRRK TPFKLS V VEIG
Sbjct: 121 NQRRRKTTPFKLSGVGVEIG 140
[3][TOP]
>UniRef100_B9IKW9 Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa
RepID=B9IKW9_POPTR
Length = 1200
Score = 188 bits (478), Expect = 2e-46
Identities = 90/140 (64%), Positives = 108/140 (77%)
Frame = +2
Query: 137 MDLGGSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNV 316
M+ GS KE+V TQVS+GGFD V A DL E+L+ IGLV+RCRLKTSWTPPESYP F +
Sbjct: 1 MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60
Query: 317 ADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFL 496
D ++RT+DY++V PHAFVHFALP+SAT A++ASG C+L K LKV GP+NP+ L
Sbjct: 61 TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120
Query: 497 NQRRRKETPFKLSDVLVEIG 556
NQRRR TPFKLSDV EIG
Sbjct: 121 NQRRRTTTPFKLSDVGFEIG 140
[4][TOP]
>UniRef100_A7P5T3 Chromosome chr4 scaffold_6, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P5T3_VITVI
Length = 1197
Score = 179 bits (453), Expect = 2e-43
Identities = 88/140 (62%), Positives = 105/140 (75%)
Frame = +2
Query: 137 MDLGGSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNV 316
M+ GSEK+ V TQ+SIGGFD V A +L +LE+ IG V RCRLKTS TPPESYP+F +
Sbjct: 1 MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60
Query: 317 ADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFL 496
DTA ++RT+DYKKVEPHAFVHF PE+AT ALDA+G +L GKPLKV GP+ P+ L
Sbjct: 61 IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120
Query: 497 NQRRRKETPFKLSDVLVEIG 556
NQRRR PFK DV +EIG
Sbjct: 121 NQRRRTTFPFKFPDVRLEIG 140
[5][TOP]
>UniRef100_Q9SG02 Putative RNA-directed RNA polymerase; 73997-69985 n=1
Tax=Arabidopsis thaliana RepID=Q9SG02_ARATH
Length = 1196
Score = 176 bits (447), Expect = 8e-43
Identities = 81/136 (59%), Positives = 105/136 (77%)
Frame = +2
Query: 149 GSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTA 328
G+ K+SV TQVSIGGF A L ++LE+ +G+V+RCRLKTSWTPP SYP F +ADT+
Sbjct: 5 GNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADTS 64
Query: 329 LVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRR 508
+ D+YKKVEPHAFVHFA+ ESA A+DA+G C+L+ +G+PLKV GP+NPY LNQRR
Sbjct: 65 NIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRR 124
Query: 509 RKETPFKLSDVLVEIG 556
R P+KL+ + +EIG
Sbjct: 125 RTTVPYKLAGITLEIG 140
[6][TOP]
>UniRef100_Q9LKP0 RNA-dependent RNA polymerase n=1 Tax=Arabidopsis thaliana
RepID=Q9LKP0_ARATH
Length = 1196
Score = 176 bits (447), Expect = 8e-43
Identities = 81/136 (59%), Positives = 105/136 (77%)
Frame = +2
Query: 149 GSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTA 328
G+ K+SV TQVSIGGF A L ++LE+ +G+V+RCRLKTSWTPP SYP F +ADT+
Sbjct: 5 GNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADTS 64
Query: 329 LVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRR 508
+ D+YKKVEPHAFVHFA+ ESA A+DA+G C+L+ +G+PLKV GP+NPY LNQRR
Sbjct: 65 NIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRR 124
Query: 509 RKETPFKLSDVLVEIG 556
R P+KL+ + +EIG
Sbjct: 125 RTTVPYKLAGITLEIG 140
[7][TOP]
>UniRef100_B3TNC1 RNA-dependent RNA polymerase n=1 Tax=Nicotiana attenuata
RepID=B3TNC1_9SOLA
Length = 1197
Score = 156 bits (395), Expect = 9e-37
Identities = 80/136 (58%), Positives = 100/136 (73%)
Frame = +2
Query: 149 GSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTA 328
GSEK+ V TQ+S+GGFD++V A L+E+LE ++G V+RCRLK S TPP+SYP F+V D
Sbjct: 5 GSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV-DAE 63
Query: 329 LVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRR 508
V+R DY+KV PHAFVHFA ESA AL A+G +L+ KPL V GP+NPY LNQRR
Sbjct: 64 RVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRR 123
Query: 509 RKETPFKLSDVLVEIG 556
R PFK SDV +E+G
Sbjct: 124 RTTMPFKFSDVSIEMG 139
[8][TOP]
>UniRef100_Q647I5 Putative RNA-dependent RNA polymerase SDE1 n=1 Tax=Nicotiana
benthamiana RepID=Q647I5_NICBE
Length = 1197
Score = 155 bits (391), Expect = 3e-36
Identities = 81/136 (59%), Positives = 99/136 (72%)
Frame = +2
Query: 149 GSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTA 328
GSEK+ V TQ+S+GGFD++V A L+E+LE ++G V+RCRLK S TPP+SYP ++V D A
Sbjct: 5 GSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV-DAA 63
Query: 329 LVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRR 508
V R DY+KV PHAFVHFA ESA AL A+G L+ KPL V GP+NPY LNQRR
Sbjct: 64 RVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLNQRR 123
Query: 509 RKETPFKLSDVLVEIG 556
R PFK SDV VE+G
Sbjct: 124 RTTMPFKFSDVSVEMG 139
[9][TOP]
>UniRef100_B5BLP6 RNA-dependent RNA polymerase 6 n=1 Tax=Nicotiana tabacum
RepID=B5BLP6_TOBAC
Length = 1197
Score = 154 bits (390), Expect = 3e-36
Identities = 79/136 (58%), Positives = 99/136 (72%)
Frame = +2
Query: 149 GSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTA 328
GSEK+ V TQ+S+GGFD++V A L+E+LE ++G V+RCRLK S TPP+SYP +++ D
Sbjct: 5 GSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI-DAE 63
Query: 329 LVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRR 508
V R DY+KV PHAFVHFA ESA AL A+G +L+ KPL V GP+NPY LNQRR
Sbjct: 64 RVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRR 123
Query: 509 RKETPFKLSDVLVEIG 556
R PFK SDV VE+G
Sbjct: 124 RTTMPFKFSDVSVEMG 139
[10][TOP]
>UniRef100_A9CRC9 RNA-dependent RNA polymerase 6 n=1 Tax=Nicotiana tabacum
RepID=A9CRC9_TOBAC
Length = 1197
Score = 152 bits (385), Expect = 1e-35
Identities = 79/136 (58%), Positives = 100/136 (73%)
Frame = +2
Query: 149 GSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVADTA 328
GSEKE V TQ+S GGFD++V A L+E+LE ++G V+RCRLK S TPP+SYP +++ D
Sbjct: 5 GSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI-DAE 63
Query: 329 LVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRR 508
V+R ++Y+KV PHAFVHFA ESA AL A+G +L+ KPL V GP+NPY LNQRR
Sbjct: 64 KVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLNQRR 123
Query: 509 RKETPFKLSDVLVEIG 556
R PFK SDV VE+G
Sbjct: 124 RTTMPFKFSDVSVEMG 139
[11][TOP]
>UniRef100_Q8LHH9 Probable RNA-dependent RNA polymerase SHL2 n=1 Tax=Oryza sativa
Japonica Group RepID=SHL2_ORYSJ
Length = 1218
Score = 130 bits (328), Expect = 5e-29
Identities = 67/134 (50%), Positives = 88/134 (65%), Gaps = 4/134 (2%)
Frame = +2
Query: 167 VFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNV----ADTALV 334
V TQVS+GGFD+ V A DLA+FLE+ +GLV+RCR+KTSWTPP+SYP+F + A +
Sbjct: 28 VTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASASAA 87
Query: 335 KRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRRRK 514
Y +V PHAFVHFA PE A A D +G L+ GKPL+V S P + ++ RR
Sbjct: 88 AAPPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVS-RRSS 146
Query: 515 ETPFKLSDVLVEIG 556
PF+ DV +E+G
Sbjct: 147 IAPFRFPDVRLEVG 160
[12][TOP]
>UniRef100_C5XM68 Putative uncharacterized protein Sb03g022880 n=1 Tax=Sorghum
bicolor RepID=C5XM68_SORBI
Length = 1207
Score = 128 bits (321), Expect = 3e-28
Identities = 66/131 (50%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
Frame = +2
Query: 167 VFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVAD-TALVKRT 343
V TQVS+GGFD+ VKA DLA+FLE + GLV+RCR+KTSWTPP++YP+F + T+ +
Sbjct: 20 VTTQVSLGGFDATVKALDLADFLELKAGLVWRCRVKTSWTPPDAYPDFLLPTVTSAAAQP 79
Query: 344 DDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRRRKETP 523
Y +V PHAFVHFA PE A A DA+G +L+ GKPL+ S Q RRR +P
Sbjct: 80 PQYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRAASA-QESSLRASRRRSVSP 138
Query: 524 FKLSDVLVEIG 556
F+ +E+G
Sbjct: 139 FRFPGSRLEVG 149
[13][TOP]
>UniRef100_Q8GUU1 Putative uncharacterized protein F16J10.8 n=1 Tax=Arabidopsis
thaliana RepID=Q8GUU1_ARATH
Length = 143
Score = 113 bits (283), Expect = 8e-24
Identities = 61/141 (43%), Positives = 87/141 (61%), Gaps = 1/141 (0%)
Frame = +2
Query: 137 MDLGGSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGL-VYRCRLKTSWTPPESYPEFN 313
M+ G+ K V +QV+I GF K +L ++LEN++GL V+RCRLKTSWTP SYP F
Sbjct: 1 MESEGNMKNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFE 60
Query: 314 VADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYF 493
+ DT+ + + D Y++V PHAFVH ++ +DA+ L+ G+PLK +NPY
Sbjct: 61 IIDTSNIPKFDCYERVVPHAFVHC---DAHKSLMDAAEQXKLILGGQPLKFSLSSENPYT 117
Query: 494 LNQRRRKETPFKLSDVLVEIG 556
LN P+KL+ V +EIG
Sbjct: 118 LN-------PYKLTGVSLEIG 131
[14][TOP]
>UniRef100_Q58G28 Putative uncharacterized protein n=1 Tax=Arabidopsis thaliana
RepID=Q58G28_ARATH
Length = 143
Score = 113 bits (283), Expect = 8e-24
Identities = 61/141 (43%), Positives = 87/141 (61%), Gaps = 1/141 (0%)
Frame = +2
Query: 137 MDLGGSEKESVFTQVSIGGFDSEVKAHDLAEFLENRIGL-VYRCRLKTSWTPPESYPEFN 313
M+ G+ K V +QV+I GF K +L ++LEN++GL V+RCRLKTSWTP SYP F
Sbjct: 1 MESEGNMKNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFE 60
Query: 314 VADTALVKRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYF 493
+ DT+ + + D Y++V PHAFVH ++ +DA+ L+ G+PLK +NPY
Sbjct: 61 IIDTSNIPKFDCYERVVPHAFVHC---DAHKSLMDAAEQSKLILGGQPLKFSLSSENPYT 117
Query: 494 LNQRRRKETPFKLSDVLVEIG 556
LN P+KL+ V +EIG
Sbjct: 118 LN-------PYKLTGVSLEIG 131
[15][TOP]
>UniRef100_Q9SHT7 Putative uncharacterized protein At2g05370 n=1 Tax=Arabidopsis
thaliana RepID=Q9SHT7_ARATH
Length = 211
Score = 110 bits (275), Expect = 7e-23
Identities = 59/134 (44%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Frame = +2
Query: 158 KESVFTQVSIGGFDSEVKAHDLAEFLENRIGL-VYRCRLKTSWTPPESYPEFNVADTALV 334
K V +QV+I GF K +L ++LEN++GL V+RCRLKTSWTP SYP F + DT+ +
Sbjct: 2 KNLVVSQVTISGFGESTKTKELTDYLENKVGLLVWRCRLKTSWTPHGSYPNFEIIDTSNI 61
Query: 335 KRTDDYKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQRRRK 514
+ D Y++V PHAFVH ++ +DA+ L+ G+PLK +NPY LN
Sbjct: 62 PKFDCYERVVPHAFVHC---DAHKSLMDAAEQSKLILGGQPLKFSLSSENPYTLN----- 113
Query: 515 ETPFKLSDVLVEIG 556
P+KL+ V +EIG
Sbjct: 114 --PYKLTGVSLEIG 125
[16][TOP]
>UniRef100_B9EXA5 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9EXA5_ORYSJ
Length = 1571
Score = 79.0 bits (193), Expect = 2e-13
Identities = 34/48 (70%), Positives = 43/48 (89%)
Frame = +2
Query: 167 VFTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEF 310
V TQVS+GGFD+ V A DLA+FLE+ +GLV+RCR+KTSWTPP+SYP+F
Sbjct: 28 VTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDF 75
[17][TOP]
>UniRef100_C5YIV2 Putative uncharacterized protein Sb07g006150 n=1 Tax=Sorghum
bicolor RepID=C5YIV2_SORBI
Length = 1220
Score = 73.9 bits (180), Expect = 7e-12
Identities = 57/172 (33%), Positives = 78/172 (45%), Gaps = 37/172 (21%)
Frame = +2
Query: 152 SEKESVFTQVSIGGFDSEVKA-HDLAEFLENRIGLVYRCRLKTSWTPPESYPEF------ 310
S E V T+VS+GGFDS + +LA++LE G V+RCR+KTS TPP SYP+F
Sbjct: 4 SPAEPVTTRVSVGGFDSRFTSPRELADYLEAVAGRVWRCRVKTSCTPPNSYPDFQCLPLL 63
Query: 311 ----------NVADTALVKRTDD---------------YKKVEPHAFVHFALPESATEAL 415
+ + A +R D Y V PHAFVHF PE+A A
Sbjct: 64 PAANAHQPPPHYSSRARRRRAPDGEDDGALAFQAAPTPYNLVPPHAFVHFVHPEAARRAA 123
Query: 416 DASGSCDLMWEGKPLKVISGPQNPYFL-----NQRRRKETPFKLSDVLVEIG 556
+ G ++ S QN RR+ PF+ ++ VE+G
Sbjct: 124 RS---------GILVRASSSSQNKSSAAVRDRAVRRQNAKPFRFTNARVEVG 166
[18][TOP]
>UniRef100_C5Z766 Putative uncharacterized protein Sb10g025970 n=1 Tax=Sorghum
bicolor RepID=C5Z766_SORBI
Length = 1251
Score = 72.0 bits (175), Expect = 3e-11
Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 10/90 (11%)
Frame = +2
Query: 173 TQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVA-------DTAL 331
T+V + GFD+ + A LA+ LE+ G V+RCR+KTS TPPESYP+F + D A+
Sbjct: 66 TRVVLTGFDAGLSARGLADDLEHLAGTVWRCRVKTSVTPPESYPDFQLPVHPADDDDAAV 125
Query: 332 VKRTDDYKK---VEPHAFVHFALPESATEA 412
D+ + V PHAFVHF P +A A
Sbjct: 126 FHHQDEPSRHGVVAPHAFVHFEHPNAADRA 155
[19][TOP]
>UniRef100_C5Z764 Putative uncharacterized protein Sb10g025950 n=1 Tax=Sorghum
bicolor RepID=C5Z764_SORBI
Length = 1239
Score = 67.0 bits (162), Expect = 9e-10
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Frame = +2
Query: 173 TQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPEFNVAD--TALVKRTD 346
T+ + GFD+ + A LA+ LE+ G V+RCR+KTS TPP+SYP+F++ A V D
Sbjct: 60 TRAILTGFDAGLSARGLADDLEHVAGTVWRCRVKTSITPPKSYPDFHLPAILAAAVLHPD 119
Query: 347 D---YKKVEPHAFVHFALPESATEALDASGSCDLMWEGKPLKVISGPQNPYFLNQR 505
+ +V PHAFVHF ++A A G K+ QN Y L+ R
Sbjct: 120 GPSRHGRVAPHAFVHFEQLKAANHA------------GDFFKMRISAQNTYLLHGR 163