[UP]
[1][TOP]
>UniRef100_Q9BBQ4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lotus japonicus
RepID=RPOA_LOTJA
Length = 333
Score = 367 bits (943), Expect = e-100
Identities = 180/180 (100%), Positives = 180/180 (100%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI
Sbjct: 77 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ
Sbjct: 137 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDL 3
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDL
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDL 256
[2][TOP]
>UniRef100_UPI0001596B8A RNA polymerase alpha subunit n=1 Tax=Medicago truncatula
RepID=UPI0001596B8A
Length = 333
Score = 331 bits (848), Expect = 2e-89
Identities = 162/179 (90%), Positives = 167/179 (93%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE +HEILMNLKEIVLKSNLYG RDASICFKGPGYVTAQ+IILPPSV IVDNTQHI
Sbjct: 77 IVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LCI LQIER RGYRI TL N QDGSY IDA+FMPVRNANHSIHSYVNGNEKQ
Sbjct: 137 ANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE LNFENN+HKVTLPLFT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHD 255
[3][TOP]
>UniRef100_C6TK62 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TK62_SOYBN
Length = 269
Score = 325 bits (832), Expect = 2e-87
Identities = 157/180 (87%), Positives = 167/180 (92%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VHEILMNLKEIVL+SNLYG RDASICFKGPGYVTAQ+IILPPSV IVDNTQHI
Sbjct: 77 IIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
ANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY IDA FMPVRN NHSIHSYVNGNEKQ
Sbjct: 137 ANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDL 3
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N ENN+HKVTLPLFT HD+
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLPLFTFHDI 256
[4][TOP]
>UniRef100_Q2PMQ3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Glycine max
RepID=RPOA_SOYBN
Length = 333
Score = 325 bits (832), Expect = 2e-87
Identities = 157/180 (87%), Positives = 167/180 (92%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VHEILMNLKEIVL+SNLYG RDASICFKGPGYVTAQ+IILPPSV IVDNTQHI
Sbjct: 77 IIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
ANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY IDA FMPVRN NHSIHSYVNGNEKQ
Sbjct: 137 ANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDL 3
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N ENN+HKVTLPLFT HD+
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLPLFTFHDI 256
[5][TOP]
>UniRef100_P13911 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pisum sativum
RepID=RPOA_PEA
Length = 334
Score = 318 bits (814), Expect = 2e-85
Identities = 155/179 (86%), Positives = 166/179 (92%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE +HEILMNLKEIVL+SNLYG R+ASICFKGPGYVTAQ+IILP SV ++DNTQHI
Sbjct: 77 IVGIQESIHEILMNLKEIVLRSNLYGTREASICFKGPGYVTAQDIILP-SVEVIDNTQHI 135
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LCI LQIER RGYRI TL N QDGSY IDA+FMPVRNANHSIHSYVNGN+KQ
Sbjct: 136 ANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNQKQ 195
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE LNFENN+HK+TLPLFT HD
Sbjct: 196 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKMTLPLFTFHD 254
[6][TOP]
>UniRef100_B5LMQ5 RNA polymerase alpha subunit n=1 Tax=Cicer arietinum
RepID=B5LMQ5_CICAR
Length = 333
Score = 311 bits (798), Expect = 1e-83
Identities = 152/179 (84%), Positives = 164/179 (91%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE +HEILMNLKEIVL+SNLYG RDASICFKGPG VTAQ+IILPPSV IVDNTQHI
Sbjct: 77 IVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGSVTAQDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LC+ L++ER+RGYRI TL N QD SY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+KLN ENN+ KVTLPLFT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNLENNQQKVTLPLFTFHD 255
[7][TOP]
>UniRef100_A4GGD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phaseolus
vulgaris RepID=RPOA_PHAVU
Length = 333
Score = 308 bits (789), Expect = 2e-82
Identities = 148/180 (82%), Positives = 165/180 (91%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VHEI MNLKEIVLKSN+YGI+DASI FKGPGY+TAQ+IILPPSV IVDN QHI
Sbjct: 77 IIGIEESVHEIFMNLKEIVLKSNMYGIQDASISFKGPGYITAQDIILPPSVEIVDNRQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
ANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY+IDA FMPVRN N+SIHSYVNGNEKQ
Sbjct: 137 ANVTEPVHLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDL 3
EILFLEIWTNGSLTPKEALYEAS+NLI+LFIPFLHAEE+ + E N+HKVTLPLFT HD+
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASQNLIELFIPFLHAEEDNFHLEKNQHKVTLPLFTFHDI 256
[8][TOP]
>UniRef100_Q8MC99 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vigna angularis
RepID=RPOA_PHAAN
Length = 333
Score = 308 bits (789), Expect = 2e-82
Identities = 149/180 (82%), Positives = 163/180 (90%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VHEI MNLKEIVLKSN+YG +DASI FKGPGY+TAQ+IILPPSV IVDN QHI
Sbjct: 77 IIGIEESVHEIFMNLKEIVLKSNMYGTQDASISFKGPGYITAQDIILPPSVEIVDNRQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
ANVTEP+ LCI L+IER+RGYRI TLKNFQDGSY+IDA FMPVRN N+SIHSYVNGNEKQ
Sbjct: 137 ANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDL 3
EILFLEIWTNGSLTPKEALYEAS+NLIDLFIPFLHAEEE N E +HKVTLPLFT HD+
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNLEKKKHKVTLPLFTFHDI 256
[9][TOP]
>UniRef100_Q49KW6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Eucalyptus
globulus subsp. globulus RepID=RPOA_EUCGG
Length = 337
Score = 306 bits (785), Expect = 5e-82
Identities = 152/179 (84%), Positives = 163/179 (91%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+SNLYG R+ASIC KGPG VTAQ+IILP SV IVDNTQ+I
Sbjct: 77 IVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQDIILPTSVEIVDNTQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LCIGLQIER+RGY I T KNFQDGSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ ENN++KVTLP FT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQYKVTLPFFTFHD 255
[10][TOP]
>UniRef100_Q09WY5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Morus indica
RepID=RPOA_MORIN
Length = 323
Score = 299 bits (766), Expect = 8e-80
Identities = 150/178 (84%), Positives = 159/178 (89%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ+IILPPSV IVDNTQHI
Sbjct: 77 IVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LCI LQIER+RGYRI T NFQ+GSY IDA+FMPVRNANHSIHSYVNGNE Q
Sbjct: 137 ANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHSIHSYVNGNENQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCH 9
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPF HAEE + ENN+HK TLPLF H
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HLENNQHKGTLPLFNFH 251
[11][TOP]
>UniRef100_B8R4C0 RNA polymerase alpha subunit n=1 Tax=Trifolium subterraneum
RepID=B8R4C0_TRISU
Length = 337
Score = 299 bits (765), Expect = 1e-79
Identities = 147/181 (81%), Positives = 161/181 (88%), Gaps = 2/181 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE +HEILMNLK+IVL+SNLYG RDASICFKGPGYVTA++IILPPSV IVDNTQHI
Sbjct: 77 IVGIQESIHEILMNLKQIVLRSNLYGTRDASICFKGPGYVTARDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDA--IFMPVRNANHSIHSYVNGNE 189
AN+TEPI LCI LQIER RGYR T+ N QDGSY ID +FMPV +AN+SIHSY+N NE
Sbjct: 137 ANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFMPVIHANYSIHSYLNANE 196
Query: 188 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCH 9
KQEILFLEIWTNGSLTPKEALYEA+RNLIDLFIPFLHAEEE +FENN+HKVTLPLF H
Sbjct: 197 KQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENFHFENNQHKVTLPLFAFH 256
Query: 8 D 6
D
Sbjct: 257 D 257
[12][TOP]
>UniRef100_B1A967 RNA polymerase alpha chain n=1 Tax=Carica papaya RepID=B1A967_CARPA
Length = 327
Score = 299 bits (765), Expect = 1e-79
Identities = 148/179 (82%), Positives = 159/179 (88%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+SNLYG RDA IC KGPGYVTAQ+I+LPPSV IVDNTQHI
Sbjct: 77 IVGIQESVHEILMNLKEIVLRSNLYGTRDAFICVKGPGYVTAQDIVLPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI L IGLQIER+RGY I T NFQDGSY IDA+FMPV+NANHSIHSY GNEKQ
Sbjct: 137 ASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQNANHSIHSYGTGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLHAEEEK ENN+HKVTLP F HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLENNQHKVTLPFFPFHD 255
[13][TOP]
>UniRef100_Q4VZK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cucumis sativus
RepID=RPOA_CUCSA
Length = 333
Score = 298 bits (764), Expect = 1e-79
Identities = 151/181 (83%), Positives = 161/181 (88%), Gaps = 2/181 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+SNLYG RDASIC KGPG VTAQ+IILPPSV IVDNTQHI
Sbjct: 77 IVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+ EPI LCI L+IER+RGY I T NFQD SY +DAIFMPVRN NHSIHSYVNGNEKQ
Sbjct: 137 ANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF--ENNEHKVTLPLFTCH 9
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEEK NF +NN+ KVTLPLFT H
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKVTLPLFTFH 256
Query: 8 D 6
+
Sbjct: 257 E 257
[14][TOP]
>UniRef100_Q2L938 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
hirsutum RepID=RPOA_GOSHI
Length = 329
Score = 298 bits (762), Expect = 2e-79
Identities = 146/179 (81%), Positives = 157/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+ NLYG R+A IC KGPGYVTAQ+IILPPSV IVDNTQH+
Sbjct: 79 IVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHV 138
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCIGLQIER+RGY I T KNF DGSY IDA+FMPVRNANHSIH Y N NEKQ
Sbjct: 139 ASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHCYGNDNEKQ 198
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ ENN+H VTLP F HD
Sbjct: 199 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLENNQHDVTLPFFPFHD 257
[15][TOP]
>UniRef100_B5AH30 RNA polymerase alpha subunit n=1 Tax=Gonystylus bancanus
RepID=B5AH30_9ROSI
Length = 329
Score = 297 bits (761), Expect = 3e-79
Identities = 146/179 (81%), Positives = 157/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG R+A IC KGPGYVTAQ+IILPPSV IVDNTQHI
Sbjct: 79 IAGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHI 138
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCIGLQIER+RGY I T NF DGSY ID +FMPVRN NHSIHSY NGNEKQ
Sbjct: 139 ASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPVRNVNHSIHSYGNGNEKQ 198
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + EN++HKVTLP F HD
Sbjct: 199 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHLENSQHKVTLPFFPFHD 257
[16][TOP]
>UniRef100_C0LEA6 RpoA n=1 Tax=Jatropha curcas RepID=C0LEA6_9ROSI
Length = 339
Score = 295 bits (756), Expect = 1e-78
Identities = 145/178 (81%), Positives = 157/178 (88%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE +HEILMNLK +VLKSNLYG DASI KGPGYVTAQ+IILPP V I+DNTQHI
Sbjct: 77 IAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TE I LCIGLQIER+RGYRI NFQDGSY IDA+FMPVRNANHS+HSY NGNEKQ
Sbjct: 137 ASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCH 9
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E N+HKVTLPLFT H
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPLFTFH 254
[17][TOP]
>UniRef100_A4GYU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus
trichocarpa RepID=RPOA_POPTR
Length = 339
Score = 293 bits (751), Expect = 4e-78
Identities = 142/179 (79%), Positives = 158/179 (88%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE +HEILMNLKEIVL+SNLYG DASIC KGPG VTAQ+IILPPSV I+DNTQHI
Sbjct: 77 ITGIQESIHEILMNLKEIVLRSNLYGTHDASICVKGPGCVTAQDIILPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++ EPI L IGL+IER+RGY + KNFQDGSY+IDA+FMPVRNANHS+HSY NGNEKQ
Sbjct: 137 ASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E N+HK+TLPLF HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLEKNQHKITLPLFAFHD 255
[18][TOP]
>UniRef100_Q09G14 DNA-directed RNA polymerase subunit alpha n=1 Tax=Platanus
occidentalis RepID=RPOA_PLAOC
Length = 337
Score = 292 bits (747), Expect = 1e-77
Identities = 142/179 (79%), Positives = 158/179 (88%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEIVL+SNLYG R+ASIC +GPGYVTAQ+II PPSV VDNTQHI
Sbjct: 77 IVGIEESVHEILMNLKEIVLRSNLYGTRNASICIRGPGYVTAQDIISPPSVETVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI L+IER+RGYR+ T N QDGSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVRNANHSIHSYANGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHA+EE + E+N++ VTLP FT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAQEENILLEDNQNGVTLPFFTFHD 255
[19][TOP]
>UniRef100_Q14FC5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Populus alba
RepID=RPOA_POPAL
Length = 339
Score = 291 bits (746), Expect = 2e-77
Identities = 141/179 (78%), Positives = 158/179 (88%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE +HEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ+IILPPSV I+DNTQHI
Sbjct: 77 ITGIQESIHEILMNLKEIVLRSNLYGTHNASICVKGPGCVTAQDIILPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++ EPI L IGL+IER+RGY + KNFQDGSY+IDA+FMPVRNANHS+HSY NGNEKQ
Sbjct: 137 ASLREPIDLHIGLEIERNRGYCMKPPKNFQDGSYSIDAVFMPVRNANHSVHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E N+HK+TLPLF HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESFHLEKNQHKITLPLFAFHD 255
[20][TOP]
>UniRef100_A7R909 Chromosome undetermined scaffold_3171, whole genome shotgun
sequence n=1 Tax=Vitis vinifera RepID=A7R909_VITVI
Length = 313
Score = 291 bits (745), Expect = 2e-77
Identities = 145/179 (81%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ+II PPSV IVDNTQHI
Sbjct: 71 IVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEIVDNTQHI 130
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A + EPI LCIGLQIER+RGY I NFQDGSY IDA+FMPVRNANHSIHSY NGNE+Q
Sbjct: 131 ARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNERQ 190
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E N+HK TLP T HD
Sbjct: 191 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTLPPLTFHD 249
[21][TOP]
>UniRef100_Q0ZIY7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Vitis vinifera
RepID=RPOA_VITVI
Length = 331
Score = 291 bits (745), Expect = 2e-77
Identities = 145/179 (81%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ+II PPSV IVDNTQHI
Sbjct: 77 IVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A + EPI LCIGLQIER+RGY I NFQDGSY IDA+FMPVRNANHSIHSY NGNE+Q
Sbjct: 137 ARLMEPIDLCIGLQIERNRGYSIKRPNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNERQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E N+HK TLP T HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKSTLPPLTFHD 255
[22][TOP]
>UniRef100_B1NWI2 RNA polymerase alpha subunit n=1 Tax=Manihot esculenta
RepID=B1NWI2_MANES
Length = 343
Score = 290 bits (742), Expect = 5e-77
Identities = 145/183 (79%), Positives = 159/183 (86%), Gaps = 4/183 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE +HEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ+IILPP V I+DNTQHI
Sbjct: 77 IAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQDIILPPFVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNF--QDGSYNIDAIFMPVRNANHSIHSYVNGNE 189
A++T+ I LCIGLQIER+RGYRI NF QDGSY+IDA+FMPVRNANHS+HSY NGNE
Sbjct: 137 ASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMPVRNANHSVHSYGNGNE 196
Query: 188 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN--FENNEHKVTLPLFT 15
KQEILFLEIWTNGSLTPKEAL+EASRNLID FIPFLHAEEE L+ E N+HKVTLPLF
Sbjct: 197 KQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLHLEIEKNQHKVTLPLFC 256
Query: 14 CHD 6
HD
Sbjct: 257 FHD 259
[23][TOP]
>UniRef100_A9QBM7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBM7_MUSAC
Length = 339
Score = 289 bits (740), Expect = 8e-77
Identities = 140/179 (78%), Positives = 157/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VHEIL+NLKEIVL+SN+YG+RDASIC +GP YVTAQ+II PPSV IVD TQHI
Sbjct: 77 IIGIEESVHEILLNLKEIVLRSNIYGVRDASICARGPKYVTAQDIISPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LCIGLQI RDRGYR N Q+GSY IDA+ MPVRNANHSIHSY NGNEKQ
Sbjct: 137 ANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NF+ N+++ TLP+FT D
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFKENKNRFTLPIFTFQD 255
[24][TOP]
>UniRef100_B0Z4Q8 RNA polymerase alpha subunit n=2 Tax=Oenothera RepID=B0Z4Q8_OENAR
Length = 366
Score = 289 bits (739), Expect = 1e-76
Identities = 142/178 (79%), Positives = 157/178 (88%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ+I+LPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++ EPI LCIGLQIER+RGY I + NFQDGSY IDA+FMPVRNANHSIHSY N NEKQ
Sbjct: 137 ASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCH 9
EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE L+ NN++ VT PLFT H
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGNNKYNVTFPLFTFH 254
[25][TOP]
>UniRef100_Q2MIF6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Solanum
RepID=RPOA_SOLBU
Length = 337
Score = 289 bits (739), Expect = 1e-76
Identities = 142/179 (79%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ+IILPP V IVDNTQHI
Sbjct: 77 ITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILF+EIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ L ++N+H V L FT HD
Sbjct: 197 EILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHD 255
[26][TOP]
>UniRef100_Q8S8V9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Atropa belladonna
RepID=RPOA_ATRBE
Length = 337
Score = 289 bits (739), Expect = 1e-76
Identities = 141/179 (78%), Positives = 156/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEI+MNLKEIVL+SNLYG +AS+C KGPGYVTAQ+IILPP V IVDNTQHI
Sbjct: 77 ITGIQESVHEIIMNLKEIVLRSNLYGTSEASVCVKGPGYVTAQDIILPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI CIGLQIER+RGY I T +NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L ++N+H V L FT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHD 255
[27][TOP]
>UniRef100_C3UP04 RNA polymerase alpha subunit n=1 Tax=Megaleranthis saniculifolia
RepID=C3UP04_9MAGN
Length = 328
Score = 288 bits (738), Expect = 1e-76
Identities = 143/179 (79%), Positives = 157/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ+II PPSV IVD TQHI
Sbjct: 77 IVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEIVDITQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCI LQIER+RGYR+ T N Q+ SY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWT+GSLTPKEALYEASRNLIDLFIPFLHAEE+ E+N+ +VTLP FT HD
Sbjct: 197 EILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLEDNQSRVTLPFFTFHD 255
[28][TOP]
>UniRef100_A6MM68 DNA-directed RNA polymerase subunit alpha n=1 Tax=Buxus microphylla
RepID=RPOA_BUXMI
Length = 337
Score = 288 bits (736), Expect = 2e-76
Identities = 141/179 (78%), Positives = 157/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEIVL+SNLYG RDASIC +GP +VTAQ+II PPSV I+D TQHI
Sbjct: 77 IVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRHVTAQDIISPPSVEIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCIGLQIER+RGY + T KN QDG Y IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ASLTEPIDLCIGLQIERNRGYNMKTPKNSQDGRYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHA EE ++N++KV LPLFT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHANEENFILKDNQNKVALPLFTFHD 255
[29][TOP]
>UniRef100_Q2MI69 DNA-directed RNA polymerase subunit alpha n=1 Tax=Solanum
lycopersicum RepID=RPOA_SOLLC
Length = 337
Score = 287 bits (735), Expect = 3e-76
Identities = 141/179 (78%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG +ASIC KGPGYVTAQ+IILPP V IVDNTQHI
Sbjct: 77 ITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQDIILPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILF+EIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ L ++N+H V L FT HD
Sbjct: 197 EILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHD 255
[30][TOP]
>UniRef100_Q3C1M3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Nicotiana
RepID=RPOA_NICSY
Length = 337
Score = 287 bits (734), Expect = 4e-76
Identities = 142/179 (79%), Positives = 154/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEI+L+SNLYG DASIC KGPG VTAQ+IILPP V IVDNTQHI
Sbjct: 77 ITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQDIILPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI CIGLQIER+RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L ++N+H V L FT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHD 255
[31][TOP]
>UniRef100_Q0G9T0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Daucus carota
RepID=RPOA_DAUCA
Length = 353
Score = 287 bits (734), Expect = 4e-76
Identities = 142/180 (78%), Positives = 158/180 (87%), Gaps = 1/180 (0%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+VGIQE VH+ILMNLKEIVL+SNLYG DASIC +GPGYVTAQ+IILPP V +VDNTQHI
Sbjct: 77 LVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKN-FQDGSYNIDAIFMPVRNANHSIHSYVNGNEK 186
A++TEPI+LCIGLQIER+RGY I T N +DGSY IDA+FMPVRNANHSIHSY NGN+K
Sbjct: 137 ASLTEPIELCIGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRNANHSIHSYGNGNDK 196
Query: 185 QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ NN+H V LP FT HD
Sbjct: 197 QEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLANNQHMVPLPPFTFHD 256
[32][TOP]
>UniRef100_Q4FGA0 RNA polymerase alpha chain (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FGA0_TYPLA
Length = 339
Score = 286 bits (733), Expect = 5e-76
Identities = 141/179 (78%), Positives = 156/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VHEIL+NLKEIVL+SNLYG+RDASIC +GP YVTAQ+IILPPSV IVD TQHI
Sbjct: 77 IIGIEESVHEILLNLKEIVLRSNLYGVRDASICVRGPRYVTAQDIILPPSVEIVDPTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI L I LQI+RDRGYR+ N QDGSY IDA+ MPVRNANHSIHSY NGNEKQ
Sbjct: 137 ANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NFE N+++ TLP T D
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFTLPFLTFQD 255
[33][TOP]
>UniRef100_Q9MTJ3 DNA-directed RNA polymerase subunit alpha n=3 Tax=Oenothera
RepID=RPOA_OENEH
Length = 366
Score = 286 bits (733), Expect = 5e-76
Identities = 141/178 (79%), Positives = 156/178 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+SNLYG +ASIC KGPG VTAQ+I+LPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++ EPI LCIGLQIER+RGY I + NFQDGSY IDA+FMPVRNANHSIHSY N NEKQ
Sbjct: 137 ASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCH 9
EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE L+ N++ VT PLFT H
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLGKNKYNVTFPLFTFH 254
[34][TOP]
>UniRef100_Q33C00 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nicotiana
tomentosiformis RepID=RPOA_NICTO
Length = 337
Score = 286 bits (733), Expect = 5e-76
Identities = 142/179 (79%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GIQE VHEILMNLKEIVL+SNLYG DASIC KGPGYVTAQ+IILPP V IVDNTQHI
Sbjct: 77 IMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TE I CIGLQI+R+RGY I T NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EE+ L ++N+H V L FT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHTVPLSPFTFHD 255
[35][TOP]
>UniRef100_A0ZZ67 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gossypium
barbadense RepID=RPOA_GOSBA
Length = 330
Score = 286 bits (733), Expect = 5e-76
Identities = 142/175 (81%), Positives = 154/175 (88%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+ NLYG R+A IC KGPGYVTAQ+IILPPSV IVDNTQH+
Sbjct: 79 IVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTAQDIILPPSVEIVDNTQHV 138
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCIGLQIER+RGY I T KNF DGSY IDA+FMPVRNANHSIH Y N NEKQ
Sbjct: 139 ASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMPVRNANHSIHCYGNDNEKQ 198
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLF 18
EILFLEIWTNGSLTPKEAL+EASRNLIDLFI FLHA+EE L+ ENN+H VTL F
Sbjct: 199 EILFLEIWTNGSLTPKEALHEASRNLIDLFIHFLHAKEENLHLENNQHDVTLHFF 253
[36][TOP]
>UniRef100_Q5QA74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Acorus gramineus
RepID=RPOA_ACOGR
Length = 337
Score = 286 bits (732), Expect = 7e-76
Identities = 140/179 (78%), Positives = 157/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E VHEILMNLKEIVL+SNLYG RDASIC +GP VTAQ+II PPSV +VD TQHI
Sbjct: 77 IAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEVVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCIGLQI+RDRGYR+ T KN QDGSY IDA+ MPVRNANHSIHSY NGN+KQ
Sbjct: 137 ASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +NFE N+++ T+P FT D
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVPPFTFPD 255
[37][TOP]
>UniRef100_Q3V502 DNA-directed RNA polymerase subunit alpha n=2 Tax=Acorus
RepID=RPOA_ACOCL
Length = 337
Score = 286 bits (732), Expect = 7e-76
Identities = 140/179 (78%), Positives = 157/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E VHEILMNLKEIVL+SNLYG RDASIC +GP VTAQ+II PPSV +VD TQHI
Sbjct: 77 IAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEVVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCIGLQI+RDRGYR+ T KN QDGSY IDA+ MPVRNANHSIHSY NGN+KQ
Sbjct: 137 ASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE +NFE N+++ T+P FT D
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVPPFTFPD 255
[38][TOP]
>UniRef100_Q68RX5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Panax ginseng
RepID=RPOA_PANGI
Length = 353
Score = 286 bits (731), Expect = 9e-76
Identities = 142/180 (78%), Positives = 156/180 (86%), Gaps = 1/180 (0%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+VGIQE VHEILMNLKEI+LKSNLYG DASIC +GPGYVTAQ+II PP V IVDNTQHI
Sbjct: 77 LVGIQESVHEILMNLKEIILKSNLYGTCDASICIRGPGYVTAQDIISPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKN-FQDGSYNIDAIFMPVRNANHSIHSYVNGNEK 186
A++ EPI LCIGLQIER+RGY I T N FQDGSY IDA+FMPVRNANHSIHSY NGNEK
Sbjct: 137 ASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEK 196
Query: 185 QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
QEILFLEIWTNGSLTPKEAL++ASRNLIDLFIPFLH EEE L+ +N+H V LP FT H+
Sbjct: 197 QEILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHTEEENLHLADNQHTVPLPPFTFHE 256
[39][TOP]
>UniRef100_A1XGS0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ranunculus
macranthus RepID=RPOA_RANMC
Length = 346
Score = 285 bits (730), Expect = 1e-75
Identities = 142/180 (78%), Positives = 156/180 (86%), Gaps = 1/180 (0%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEIVL+SNLYG RDASIC KGPGYVTAQ+II PPSV IVD TQHI
Sbjct: 77 IVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIISPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEP+ CIGLQIE +RGYR+ T N Q GSY IDA+FMPVRNANHSIHSY NGNE Q
Sbjct: 137 ASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVRNANHSIHSYGNGNENQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE-HKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ N ++N+ + VTLP FT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLKDNQKNGVTLPFFTFHD 256
[40][TOP]
>UniRef100_A6MMX6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Illicium
oligandrum RepID=RPOA_ILLOL
Length = 331
Score = 285 bits (729), Expect = 1e-75
Identities = 139/179 (77%), Positives = 156/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEIV +S+LYG R ASIC +GP YVTAQ+II PPSV IVD TQ+I
Sbjct: 77 IVGIEESVHEILMNLKEIVFRSHLYGTRGASICVRGPRYVTAQDIISPPSVKIVDTTQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCI LQIERDRGYRI T N+QDGSY IDA+ MPVRNANHSIHSY NGNEKQ
Sbjct: 137 ASLTEPIDLCIELQIERDRGYRIKTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGS TPKEALYEASRNLIDLF+PFLHAEE+ +N E+N+++ T PLFT HD
Sbjct: 197 EILFLEIWTNGSFTPKEALYEASRNLIDLFLPFLHAEEQDINVEDNQNRATAPLFTFHD 255
[41][TOP]
>UniRef100_A9QBD4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBD4_ELAOL
Length = 339
Score = 285 bits (728), Expect = 2e-75
Identities = 139/176 (78%), Positives = 155/176 (88%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEIL+NLKEI+L+SNLYG+ DASIC +GP YVTAQ+II PP V IVD TQHI
Sbjct: 77 IVGIEESVHEILLNLKEIILRSNLYGVIDASICVRGPRYVTAQDIISPPYVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LCI LQI+RDRGYR+ + N QDGSY IDA+ MPVRNANHSIHSY NGNEKQ
Sbjct: 137 ANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE +NFE N+++ LPLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFEENKNRFPLPLFT 252
[42][TOP]
>UniRef100_A7KVR0 RNA polymerase alpha subunit (Fragment) n=1 Tax=Olea europaea
RepID=A7KVR0_OLEEU
Length = 280
Score = 285 bits (728), Expect = 2e-75
Identities = 142/179 (79%), Positives = 153/179 (85%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG DASIC +GPGYVTAQ+IILPP V IVDNTQHI
Sbjct: 51 IAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEIVDNTQHI 110
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCIGLQI+R+RGY I NFQDGSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 111 ASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQ 170
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEE L E+N+H V L T HD
Sbjct: 171 EILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDNQHTVPLSPLTFHD 229
[43][TOP]
>UniRef100_A4QLW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nasturtium
officinale RepID=RPOA_NASOF
Length = 327
Score = 284 bits (727), Expect = 3e-75
Identities = 137/179 (76%), Positives = 156/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQ
Sbjct: 137 ATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN+H+VTLPLF H+
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFHN 255
[44][TOP]
>UniRef100_A8SED5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Ceratophyllum
demersum RepID=RPOA_CERDE
Length = 337
Score = 284 bits (727), Expect = 3e-75
Identities = 140/179 (78%), Positives = 157/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEIVL+SNLYG DASIC +GP VTAQ+II PPSV IVD TQHI
Sbjct: 77 IVGIEESVHEILMNLKEIVLRSNLYGTLDASICVRGPRSVTAQDIISPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LCIGLQIERDRGYR+ T N+QDGSY ID +FMPVRNANHSIHSY NG EKQ
Sbjct: 137 ANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPVRNANHSIHSYGNGTEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLI+LFIPFLHAEE+++ E++E+ T+PLFT H+
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILLEDSENISTVPLFTFHN 255
[45][TOP]
>UniRef100_A4QKD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Barbarea verna
RepID=RPOA_BARVE
Length = 327
Score = 284 bits (727), Expect = 3e-75
Identities = 137/179 (76%), Positives = 156/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQ
Sbjct: 137 ATLTEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN+H+VTLPLF H+
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFHN 255
[46][TOP]
>UniRef100_Q9XQN8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sinapis alba
RepID=RPOA_SINAL
Length = 327
Score = 284 bits (726), Expect = 3e-75
Identities = 137/179 (76%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL EIVLKSNLYG R+ IC +GPGY+TA++IILPPSV IVDNTQHI
Sbjct: 77 IVGIQESVHEILMNLNEIVLKSNLYGTRNPFICVQGPGYITARDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQ
Sbjct: 137 ATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILF+EIWTNGSLTPKEALYEASRNLI+LFIPFLH EEE ENN+H+VTLP+F H+
Sbjct: 197 EILFIEIWTNGSLTPKEALYEASRNLINLFIPFLHVEEETFYLENNQHQVTLPVFPFHN 255
[47][TOP]
>UniRef100_P06505 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spinacia oleracea
RepID=RPOA_SPIOL
Length = 335
Score = 283 bits (725), Expect = 4e-75
Identities = 141/179 (78%), Positives = 157/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GP VTAQ+IILPP V IVDNTQHI
Sbjct: 77 ILGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRGVTAQDIILPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCIGLQ+ER+RGY I NFQDGS+ IDA+FMPVRN NHSIHSY NGNEKQ
Sbjct: 137 ASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDL IPFLHA EE +N E+N+HKV+LPLFT H+
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHA-EENVNLEDNQHKVSLPLFTFHN 254
[48][TOP]
>UniRef100_Q0G9I7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Liriodendron
tulipifera RepID=RPOA_LIRTU
Length = 337
Score = 283 bits (725), Expect = 4e-75
Identities = 140/179 (78%), Positives = 157/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEIVL+S+LYG RDASIC +GP YVTAQ+II PPSV IVD TQHI
Sbjct: 77 IVGIEESVHEILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQDIIPPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCI LQIERDRGYR+ T N+QDGSY IDA+ MPVRNANHSIHSY N NEKQ
Sbjct: 137 ASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNRNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ + E+N ++ T+PLFT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIVLEDNPNRFTVPLFTFHD 255
[49][TOP]
>UniRef100_A4QLD8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lepidium
virginicum RepID=RPOA_LEPVR
Length = 327
Score = 283 bits (725), Expect = 4e-75
Identities = 137/179 (76%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TAQ+IILPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQDIILPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A + EPI LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQ
Sbjct: 137 ATLMEPIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN+H+VTLPLF H+
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFHN 255
[50][TOP]
>UniRef100_A6MMN9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Dioscorea
elephantipes RepID=RPOA_DIOEL
Length = 337
Score = 283 bits (725), Expect = 4e-75
Identities = 139/179 (77%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+VGI+E VHEIL NLKEIVL+SNLY IRDASIC +GP YVTAQ+II PP V IVD TQ+I
Sbjct: 77 VVGIEESVHEILFNLKEIVLRSNLYEIRDASICVRGPRYVTAQDIISPPYVEIVDTTQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LCI L+I+RDRGYR+ + N QDGSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ANLTEPIDLCIELEIKRDRGYRMKPITNSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +NFE N++K TLP T D
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFVPFLHAEEEDINFEENKNKFTLPPLTFQD 255
[51][TOP]
>UniRef100_Q09ME5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Citrus sinensis
RepID=RPOA_CITSI
Length = 328
Score = 283 bits (725), Expect = 4e-75
Identities = 143/180 (79%), Positives = 156/180 (86%), Gaps = 1/180 (0%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLK+IVL+SNLYG DA IC KGPGYVTAQ+I+LPPSV IVDNTQHI
Sbjct: 77 IVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-YNIDAIFMPVRNANHSIHSYVNGNEK 186
A++TEPI L IGLQIER RGY I T FQDG+ Y IDA+FMPVRNANHSI SY NGNEK
Sbjct: 137 ASLTEPIDLSIGLQIERSRGYNIKTPNTFQDGNCYPIDAVFMPVRNANHSIQSYGNGNEK 196
Query: 185 QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
QEILFLEIWTNGSLTPKEAL+EASR+LIDLFIPFL AE+E L ENN++KVTLP FT HD
Sbjct: 197 QEILFLEIWTNGSLTPKEALHEASRSLIDLFIPFLQAEDENLPLENNQYKVTLPFFTFHD 256
[52][TOP]
>UniRef100_A4QLM6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lobularia
maritima RepID=RPOA_LOBMA
Length = 327
Score = 283 bits (723), Expect = 7e-75
Identities = 137/179 (76%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TAQ+IILPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITAQDIILPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQ
Sbjct: 137 ATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN+H+VTLPLF H+
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPLFPFHN 255
[53][TOP]
>UniRef100_A7Y3I1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ipomoea purpurea
RepID=RPOA_IPOPU
Length = 337
Score = 281 bits (720), Expect = 2e-74
Identities = 140/179 (78%), Positives = 153/179 (85%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG DASIC KGPG VTA++IILPPSV IVDNTQHI
Sbjct: 77 IAGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGCVTAEDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI CIGLQIER+RGY + T NF+DGSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 AWLTEPIDFCIGLQIERNRGYILKTHHNFEDGSYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+ EH + L + HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDGEHTIPLSPLSFHD 255
[54][TOP]
>UniRef100_A4QL51 DNA-directed RNA polymerase subunit alpha n=1 Tax=Draba nemorosa
RepID=RPOA_DRANE
Length = 327
Score = 281 bits (719), Expect = 2e-74
Identities = 137/179 (76%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV IVDNTQHI
Sbjct: 77 IVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A VTE I LCIGL+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGN KQ
Sbjct: 137 ATVTESIDLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNGKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE + ENN+H+VTLPLF H+
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFHLENNQHQVTLPLFPFHN 255
[55][TOP]
>UniRef100_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOA_CALFG
Length = 340
Score = 281 bits (719), Expect = 2e-74
Identities = 141/181 (77%), Positives = 157/181 (86%), Gaps = 2/181 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEIVLKSNLYG RDASIC +GP YVTAQ+II PPSV IVD TQHI
Sbjct: 77 IVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQDIISPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCI LQIERDRGYR+ N+QDGSY IDA+ MPVRNANHSIHSY +GNEKQ
Sbjct: 137 ASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNANHSIHSYGSGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE--KLNFENNEHKVTLPLFTCH 9
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ LN E+N+++ T+ FT H
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNRFTVSPFTLH 256
Query: 8 D 6
D
Sbjct: 257 D 257
[56][TOP]
>UniRef100_Q06GM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Piper cenocladum
RepID=RPOA_PIPCE
Length = 339
Score = 281 bits (718), Expect = 3e-74
Identities = 139/179 (77%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEI+MNLKEIVL+SNLYG DASIC +GP YVTAQ+IILPPSV IVD TQHI
Sbjct: 77 IVGIEESVHEIVMNLKEIVLRSNLYGTLDASICIRGPRYVTAQDIILPPSVEIVDATQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TE + LCI LQIERDRGY + T N +DGSY IDAIFMPVRNANHS+HSY NGNEKQ
Sbjct: 137 ANLTERVDLCIKLQIERDRGYSMKTPHNDEDGSYPIDAIFMPVRNANHSVHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILF+EIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE +++ E+N + V L LFT HD
Sbjct: 197 EILFIEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEREIHLEDNANGVPLALFTFHD 255
[57][TOP]
>UniRef100_A4QKW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crucihimalaya
wallichii RepID=RPOA_CRUWA
Length = 327
Score = 281 bits (718), Expect = 3e-74
Identities = 136/179 (75%), Positives = 154/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV IVDNTQHI
Sbjct: 77 IVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCIGL+IER+RGY + N +D SY IDA+FMPV+NANHSIHSY NGNEKQ
Sbjct: 137 ATLTEPIDLCIGLKIERNRGYSLKISNNLEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN+H+VTLP F H+
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHN 255
[58][TOP]
>UniRef100_A9L9C8 RNA polymerase alpha subunit n=1 Tax=Lemna minor RepID=A9L9C8_LEMMI
Length = 284
Score = 280 bits (717), Expect = 4e-74
Identities = 138/179 (77%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEIVL+SNLYG R+ASIC KGP +TA++IILP SV IVD TQHI
Sbjct: 77 IVGIEESVHEILMNLKEIVLRSNLYGTREASICVKGPKTITAEDIILPASVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEP+ L IGLQI+RDRGYR+ N QDGSY IDA+FMPVRNANHSI+SY NGNEKQ
Sbjct: 137 ATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVRNANHSIYSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ +N E N+ + TLPLFT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLEENKSRFTLPLFTFHD 255
[59][TOP]
>UniRef100_A4QJW3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Olimarabidopsis
pumila RepID=RPOA_OLIPU
Length = 327
Score = 280 bits (716), Expect = 5e-74
Identities = 135/179 (75%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQ
Sbjct: 137 ATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE + ENN+H+VTLP F H+
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETVYLENNQHQVTLPFFPFHN 255
[60][TOP]
>UniRef100_Q09FS9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nandina domestica
RepID=RPOA_NANDO
Length = 338
Score = 280 bits (716), Expect = 5e-74
Identities = 138/179 (77%), Positives = 156/179 (87%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEIVL+SNLYG DASIC KGP +TA++II PPSV IVD TQHI
Sbjct: 77 IVGIEESVHEILMNLKEIVLRSNLYGTCDASICVKGPINITAKDIISPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEP LCIGLQIER+RGYR+ T Q+GSY IDA+FMPVRNANHSIHSY NGNEKQ
Sbjct: 137 ASLTEPFDLCIGLQIERNRGYRMKTPNKAQNGSYPIDAVFMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+ + E+N+++VTLP FT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIILEDNQNRVTLPFFTFHD 255
[61][TOP]
>UniRef100_A4QKM4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Capsella
bursa-pastoris RepID=RPOA_CAPBU
Length = 327
Score = 280 bits (715), Expect = 6e-74
Identities = 135/179 (75%), Positives = 154/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV+NANHSIHSY NGNEKQ
Sbjct: 137 ATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN+H+VTLP F H+
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHN 255
[62][TOP]
>UniRef100_A9QAY1 RNA polymerase alpha subunit (Fragment) n=1 Tax=Anethum graveolens
RepID=A9QAY1_9APIA
Length = 338
Score = 279 bits (714), Expect = 8e-74
Identities = 141/182 (77%), Positives = 157/182 (86%), Gaps = 3/182 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+VGIQE VH+ILMNLKEIVL+SNLYG DASIC +GPGYVTAQ+IILPP V +VDNTQHI
Sbjct: 77 LVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINT-LKNFQDGSYNIDAIFMPVRNANHSIHSY--VNGN 192
A++TEPI+L IGLQIER RGY I T NFQDGSY IDA+FMP+RNANHSIHSY NGN
Sbjct: 137 ASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRNANHSIHSYGNGNGN 196
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTC 12
+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ +N+H V LP FT
Sbjct: 197 DKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLADNQHMVPLPPFTF 256
Query: 11 HD 6
HD
Sbjct: 257 HD 258
[63][TOP]
>UniRef100_B2XWQ5 RNA polymerase alpha subunit n=1 Tax=Fagopyrum esculentum subsp.
ancestrale RepID=B2XWQ5_FAGEA
Length = 337
Score = 279 bits (713), Expect = 1e-73
Identities = 139/179 (77%), Positives = 152/179 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+S YG DASIC +GPG VTAQ+II PP V IVD TQHI
Sbjct: 77 IVGIQESVHEILMNLKEIVLRSTFYGTCDASICVRGPGGVTAQDIISPPYVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI L I LQ+ER+RGYRI T NFQDGSY ID +FMPVRN NHSIHSY NGNEKQ
Sbjct: 137 ANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVRNVNHSIHSYSNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+E + E+N+ +VTLPLF HD
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLEDNQDRVTLPLFLFHD 255
[64][TOP]
>UniRef100_A6MMF4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chloranthus
spicatus RepID=RPOA_CHLSC
Length = 334
Score = 278 bits (712), Expect = 1e-73
Identities = 135/179 (75%), Positives = 154/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E +HEI MNLKEIVL+SNLYG R+ASIC +GP YVTAQ+II PPSV IVD TQHI
Sbjct: 77 IVGIEESIHEIFMNLKEIVLRSNLYGTRNASICVRGPRYVTAQDIISPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCI LQI+RDRGYR+ T +Q+GSY IDA+ MPVRNANHSIHSY NGNEKQ
Sbjct: 137 ASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE + E+N ++ +P FT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIRLEDNPNRFNIPFFTFHD 255
[65][TOP]
>UniRef100_A4QJE7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
cordifolium RepID=RPOA_AETCO
Length = 333
Score = 278 bits (711), Expect = 2e-73
Identities = 135/179 (75%), Positives = 155/179 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL+EIVL+SNLYG +A IC +GPG +TA++IILPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGSITARDIILPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCIGLQIER+RGY + +F+DGSY IDA+FMPV+NANHSIHSY GNEKQ
Sbjct: 137 ATLTEPIDLCIGLQIERNRGYSLKMPNHFEDGSYPIDALFMPVQNANHSIHSYGTGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNG+LTPKEAL+EASRNLI+LFIPFLH EEE ENN+HKVTLPLF H+
Sbjct: 197 EILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHKVTLPLFPFHN 255
[66][TOP]
>UniRef100_A0A367 DNA-directed RNA polymerase subunit alpha n=1 Tax=Coffea arabica
RepID=RPOA_COFAR
Length = 335
Score = 278 bits (710), Expect = 2e-73
Identities = 136/179 (75%), Positives = 152/179 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIV +SNLYG DASIC +GPGYVTAQ+I+LPP V IVDNTQHI
Sbjct: 77 IAGIQESVHEILMNLKEIVFRSNLYGTCDASICVRGPGYVTAQDIVLPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A + EPI LCI L+IER+RGY I T +NFQDGSY IDA+FMP+RNAN+SIHSY NGNEKQ
Sbjct: 137 ARLMEPINLCIRLEIERNRGYLIKTPQNFQDGSYPIDAVFMPIRNANYSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL++ASRNLIDLFIPFLH EE+ + ENN+H V L F HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHQASRNLIDLFIPFLHMEEQNSHLENNQHTVPLAPFFFHD 255
[67][TOP]
>UniRef100_A4QK50 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabis hirsuta
RepID=RPOA_ARAHI
Length = 337
Score = 278 bits (710), Expect = 2e-73
Identities = 135/179 (75%), Positives = 153/179 (85%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLNEIVLRSNLYGARNAIICVQGPGYITARDIILPPSVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TE I LCIGL+IER+RGY + L F+D SY IDA+FMPV+NANHSIHSY NGN KQ
Sbjct: 137 ATLTESIDLCIGLKIERNRGYSLKILNTFEDRSYPIDAVFMPVQNANHSIHSYGNGNGKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLH EEE ENN+H VTLPLF H+
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLENNQHHVTLPLFPFHN 255
[68][TOP]
>UniRef100_Q4FG99 RNA polymerase alpha chain (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FG99_9ASPA
Length = 337
Score = 277 bits (708), Expect = 4e-73
Identities = 140/176 (79%), Positives = 153/176 (86%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEI +NLKEIVL NLYG+RDASIC +GP YVTAQ+II PPSV IVD TQHI
Sbjct: 77 IVGIEESVHEIFINLKEIVL--NLYGVRDASICVRGPRYVTAQDIISPPSVEIVDTTQHI 134
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI L I LQI+RDRGYRIN N QDGSY IDA+ MPVRNANHSIHSY NGNEKQ
Sbjct: 135 ANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE ++FE N+++ TLPLFT
Sbjct: 195 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHFEENKNRFTLPLFT 250
[69][TOP]
>UniRef100_A9QC95 RNA polymerase alpha subunit (Fragment) n=1 Tax=Trachelium
caeruleum RepID=A9QC95_TRACE
Length = 337
Score = 276 bits (706), Expect = 7e-73
Identities = 133/168 (79%), Positives = 150/168 (89%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+VGIQE VHEILMNLKEIVL+SNLYG DA+IC KGPGYVTAQ+II PP V I+DNTQHI
Sbjct: 77 LVGIQESVHEILMNLKEIVLRSNLYGTCDAAICVKGPGYVTAQDIISPPYVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI+LCIGLQIER+RGY I T KNFQDGSY IDA+FMPVRN NHSI+SY GN+K
Sbjct: 137 ASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPVRNVNHSIYSYGTGNDKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEH 39
EILFLEIWTNGSLTPKEAL+EA+RNLIDLFIPFLH EEE L+ E+N+H
Sbjct: 197 EILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDLEDNQH 244
[70][TOP]
>UniRef100_P56762 DNA-directed RNA polymerase subunit alpha n=1 Tax=Arabidopsis
thaliana RepID=RPOA_ARATH
Length = 329
Score = 275 bits (704), Expect = 1e-72
Identities = 132/179 (73%), Positives = 152/179 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNL EIVL+SNLYG R+A IC +GPGY+TA++IILPP+V I+DNTQHI
Sbjct: 77 IAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCI L+IER+RGY + NF+D SY IDA+FMPV NANHSIHSY NGNEKQ
Sbjct: 137 ATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL++ASRNLI+LFIPFLH EEE ENN+H+VTLP F H+
Sbjct: 197 EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHN 255
[71][TOP]
>UniRef100_A4QJN1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aethionema
grandiflorum RepID=RPOA_AETGR
Length = 333
Score = 275 bits (704), Expect = 1e-72
Identities = 135/179 (75%), Positives = 153/179 (85%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNL+EIVL+SNLYG +A IC +GPGY+TA++IILPPSV I+DNTQHI
Sbjct: 77 IVGIQESVHEILMNLQEIVLRSNLYGTCNALICVQGPGYITARDIILPPSVEIMDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCIGLQIER+RGY + F+DGSY IDA+FMPV+NANHSIHSY GNE Q
Sbjct: 137 ATLTEPIDLCIGLQIERNRGYSLKMPNPFEDGSYPIDALFMPVQNANHSIHSYGTGNENQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNG+LTPKEAL+EASRNLI+LFIPFLH EEE ENNE KVTLPLF H+
Sbjct: 197 EILFLEIWTNGNLTPKEALHEASRNLINLFIPFLHVEEETFYLENNEDKVTLPLFPFHN 255
[72][TOP]
>UniRef100_Q3BAK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOA_PHAAO
Length = 337
Score = 273 bits (699), Expect = 4e-72
Identities = 132/179 (73%), Positives = 153/179 (85%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E VHEIL+NLK+IVL+SNLYG+R+ASIC +GP Y+TAQ+II PPSV IVD TQHI
Sbjct: 77 IAGIEESVHEILLNLKDIVLRSNLYGVRNASICVRGPKYITAQDIISPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LCI LQI+RDRGYR+ + + DGSY ID + MPVRNANHSIHSY NGNEKQ
Sbjct: 137 ANLTEPINLCIELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILF+EIWTNGSLTPKEALYEASRNLIDL IPFLHAEEE +NF+ NE++ LP F+ D
Sbjct: 197 EILFIEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNFKENENRWNLPPFSFQD 255
[73][TOP]
>UniRef100_A7QC74 Chromosome chr10 scaffold_76, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QC74_VITVI
Length = 310
Score = 273 bits (698), Expect = 6e-72
Identities = 139/179 (77%), Positives = 151/179 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VHEILMNLKEIVL+SNLYG R A IC +GPGYVTAQ+II PPSV IVDNTQHI
Sbjct: 77 IVGIQESVHEILMNLKEIVLRSNLYGTRGAFICARGPGYVTAQDIISPPSVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A + EPI LCIGLQIER+RGY +GSY IDA+FMPVRNANHSIHSY NG+E+Q
Sbjct: 137 ARLMEPIDLCIGLQIERNRGY---------NGSYPIDAVFMPVRNANHSIHSYGNGSERQ 187
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE L+ E N+HK TLP T HD
Sbjct: 188 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEETLHLEYNQHKGTLPPLTFHD 246
[74][TOP]
>UniRef100_Q06RA0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Jasminum
nudiflorum RepID=RPOA_JASNU
Length = 355
Score = 273 bits (698), Expect = 6e-72
Identities = 137/179 (76%), Positives = 148/179 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMN KEIVL+SNLYG DASIC +GPGYVTAQ+IILPP V IVDNTQHI
Sbjct: 77 IAGIQESVHEILMNFKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCIGLQIER+RGY + N QDGSY IDA+FMPVRNANHSIHSY +GNEK
Sbjct: 137 ASLTEPIDLCIGLQIERNRGYLMKMPHNSQDGSYPIDAVFMPVRNANHSIHSYGSGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EEE E+N H V L T HD
Sbjct: 197 EILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEETSPLEDNHHTVPLSPLTFHD 255
[75][TOP]
>UniRef100_Q4FGA2 RNA polymerase alpha chain (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FGA2_NUPAD
Length = 336
Score = 273 bits (697), Expect = 8e-72
Identities = 134/179 (74%), Positives = 152/179 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLK+IV +S+LYG DASIC +GP +VTAQ+II PPSV IVD TQHI
Sbjct: 77 IVGIEESVHEILMNLKKIVFRSDLYGTLDASICVRGPRHVTAQDIISPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEP+ LCI L+IER RGY + T N+QDGSY IDA+ MPVRNANHSIHSY NGNEKQ
Sbjct: 137 AILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ +N E+N + T+P FT HD
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINIEDNLKRATVPFFTFHD 255
[76][TOP]
>UniRef100_Q332U5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lactuca sativa
RepID=RPOA_LACSA
Length = 335
Score = 272 bits (696), Expect = 1e-71
Identities = 136/179 (75%), Positives = 152/179 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+IILPP V I+DNTQHI
Sbjct: 77 IMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEILDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSIHSY NGN +
Sbjct: 137 ASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGN--K 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDL IPFLH +EE LN E N+H V LP FT +D
Sbjct: 195 EILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHTKEENLNLEGNQHMVPLPPFTFYD 253
[77][TOP]
>UniRef100_B2LMM5 RNA polymerase alpha subunit n=1 Tax=Guizotia abyssinica
RepID=B2LMM5_GUIAB
Length = 335
Score = 271 bits (694), Expect = 2e-71
Identities = 136/179 (75%), Positives = 153/179 (85%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+IILPP V IVDNTQHI
Sbjct: 77 IMGIQESVHEILMNLKEIVLRSNLYGTYEASICVRGPGYVTAQDIILPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSIHSY NGN +
Sbjct: 137 ASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGN--K 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE LN E+N+H V LP FT +D
Sbjct: 195 EILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHIVPLPPFTFYD 253
[78][TOP]
>UniRef100_Q4QZ04 DNA-directed RNA polymerase alpha chain n=1 Tax=Chrysanthemum x
morifolium RepID=Q4QZ04_CHRMO
Length = 335
Score = 271 bits (693), Expect = 2e-71
Identities = 135/179 (75%), Positives = 152/179 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+IILPP V IVDNTQHI
Sbjct: 77 IMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSIHSY NGN +
Sbjct: 137 ATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGN--K 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE LN E+N+H + LP FT +D
Sbjct: 195 EILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLEDNQHMIPLPPFTFYD 253
[79][TOP]
>UniRef100_C7SM26 RNA polymerase alpha subunit n=1 Tax=Joinvillea plicata
RepID=C7SM26_9POAL
Length = 339
Score = 270 bits (690), Expect = 5e-71
Identities = 135/176 (76%), Positives = 149/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+II PPSV IVD TQHI
Sbjct: 77 IVGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIISPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI LCI LQI+RDRGY KN QDGSY IDA+ MPVRN N+SI+S N NEK
Sbjct: 137 ANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVRNVNYSIYSCGNENEKY 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE NFE N+++ TLPL T
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNFEENKNRFTLPLLT 252
[80][TOP]
>UniRef100_Q1KXS7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helianthus annuus
RepID=RPOA_HELAN
Length = 335
Score = 269 bits (688), Expect = 8e-71
Identities = 135/179 (75%), Positives = 153/179 (85%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GIQE VHEILMNLKEIVL+SNLYG +ASIC +GPGYVTAQ+IILPP V IVDNTQHI
Sbjct: 77 IMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI+L IGLQIE++RGY I FQDGSY ID +FMPVRNANHSIHSY NGN +
Sbjct: 137 ASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGN--K 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLH +EE L+ E+N+H V LP FT +D
Sbjct: 195 EILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLSLEDNQHIVPLPPFTFYD 253
[81][TOP]
>UniRef100_A8W3F3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta exaltata
RepID=RPOA_CUSEX
Length = 335
Score = 269 bits (688), Expect = 8e-71
Identities = 136/179 (75%), Positives = 153/179 (85%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEI MNLKEIVL+SNLYG DASI KGPG+VTA++IILPP V IVD+TQHI
Sbjct: 77 IAGIQESVHEIFMNLKEIVLRSNLYGTCDASISIKGPGHVTAKDIILPPHVEIVDSTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPVRNANHSIHSY GNEKQ
Sbjct: 137 AWLTEPIDLCIGLKIERNRGYFIKTHPNFEDGSYPIDAVFMPVRNANHSIHSY--GNEKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+ +H ++L FT +D
Sbjct: 195 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTISLSPFTVYD 253
[82][TOP]
>UniRef100_B0FIU6 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta japonica
RepID=B0FIU6_CUSJA
Length = 332
Score = 268 bits (685), Expect = 2e-70
Identities = 136/178 (76%), Positives = 152/178 (85%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG DASI FKGPGYVTA++IILPP V IVD+TQHI
Sbjct: 77 IAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAEDIILPPHVEIVDSTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV+NANHSIHSY GNEKQ
Sbjct: 137 AWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCH 9
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L E+ +H + L FT +
Sbjct: 195 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADHTIPLSPFTVY 252
[83][TOP]
>UniRef100_Q49CA2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cuscuta japonica
RepID=RPOA_CUSJA
Length = 332
Score = 268 bits (685), Expect = 2e-70
Identities = 136/178 (76%), Positives = 152/178 (85%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG DASI FKGPGYVTA++IILPP V IVD+TQHI
Sbjct: 77 IAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAEDIILPPHVEIVDSTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI LCIGL+IER+RGY I T NF+DGSY IDA+FMPV+NANHSIHSY GNEKQ
Sbjct: 137 AWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCH 9
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L E+ +H + L FT +
Sbjct: 195 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADHTIPLSPFTVY 252
[84][TOP]
>UniRef100_P92389 DNA-directed RNA polymerase subunit alpha n=1 Tax=Heteranthelium
piliferum RepID=RPOA_HETPI
Length = 339
Score = 266 bits (681), Expect = 5e-70
Identities = 131/176 (74%), Positives = 149/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPKYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ +KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[85][TOP]
>UniRef100_Q3Y512 RNA polymerase subunit a n=1 Tax=Elymus dentatus RepID=Q3Y512_9POAL
Length = 339
Score = 265 bits (678), Expect = 1e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[86][TOP]
>UniRef100_P93993 DNA-directed RNA polymerase subunit alpha n=1 Tax=Australopyrum
velutinum RepID=RPOA_AUSVE
Length = 339
Score = 265 bits (678), Expect = 1e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[87][TOP]
>UniRef100_Q7H6H4 RNA polymerase alpha subunit n=1 Tax=Elymus virginicus
RepID=Q7H6H4_9POAL
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[88][TOP]
>UniRef100_Q539W0 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys fragilis
subsp. secaliformis RepID=Q539W0_PSAFR
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[89][TOP]
>UniRef100_Q539V4 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V4_9POAL
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[90][TOP]
>UniRef100_Q7H6F6 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_PSAJU
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[91][TOP]
>UniRef100_P92418 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
fragilis RepID=RPOA_PSAFR
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[92][TOP]
>UniRef100_A8Y9B8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lolium perenne
RepID=RPOA_LOLPR
Length = 341
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 149/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD +Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTSQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[93][TOP]
>UniRef100_P93956 DNA-directed RNA polymerase subunit alpha n=2 Tax=Triticeae
RepID=RPOA_FESSE
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[94][TOP]
>UniRef100_P93974 DNA-directed RNA polymerase subunit alpha n=2 Tax=Eremopyrum
RepID=RPOA_EREDI
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[95][TOP]
>UniRef100_Q8MAI9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Leymus
californicus RepID=RPOA_ELYCL
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[96][TOP]
>UniRef100_Q7H6I5 DNA-directed RNA polymerase subunit alpha n=22 Tax=Triticeae
RepID=RPOA_ELYCA
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[97][TOP]
>UniRef100_P92225 DNA-directed RNA polymerase subunit alpha n=1 Tax=Crithopsis
delileana RepID=RPOA_CRIDE
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFT 252
[98][TOP]
>UniRef100_P92220 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bromus inermis
RepID=RPOA_BROIN
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[99][TOP]
>UniRef100_P92209 DNA-directed RNA polymerase subunit alpha n=3 Tax=Agropyron
RepID=RPOA_AGRCR
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDRAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[100][TOP]
>UniRef100_Q8MAJ0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops
uniaristata RepID=RPOA_AEGUN
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFT 252
[101][TOP]
>UniRef100_P92429 DNA-directed RNA polymerase subunit alpha n=1 Tax=Aegilops tauschii
RepID=RPOA_AEGTA
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[102][TOP]
>UniRef100_Q7GED9 DNA-directed RNA polymerase subunit alpha n=9 Tax=Triticeae
RepID=RPOA_AEGCM
Length = 339
Score = 265 bits (677), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFT 252
[103][TOP]
>UniRef100_Q539V6 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys caduca
RepID=Q539V6_9POAL
Length = 339
Score = 265 bits (676), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDXAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[104][TOP]
>UniRef100_P93960 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
rupestris RepID=RPOA_PSARU
Length = 339
Score = 265 bits (676), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTXQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[105][TOP]
>UniRef100_P93968 DNA-directed RNA polymerase subunit alpha n=1 Tax=Festucopsis
festucoides RepID=RPOA_FESFE
Length = 339
Score = 265 bits (676), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNLNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[106][TOP]
>UniRef100_A1EA40 DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrostis
stolonifera RepID=RPOA_AGRST
Length = 339
Score = 265 bits (676), Expect = 2e-69
Identities = 131/176 (74%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[107][TOP]
>UniRef100_Q06GW5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Drimys
granadensis RepID=RPOA_DRIGR
Length = 339
Score = 264 bits (675), Expect = 3e-69
Identities = 135/181 (74%), Positives = 152/181 (83%), Gaps = 2/181 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VH+ILMNLKEIVL+SNLYG DASI +GP VTAQ+II PPSV +VD TQHI
Sbjct: 77 IVGIEESVHQILMNLKEIVLRSNLYGTCDASIFVRGPRCVTAQDIISPPSVKMVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSY--NIDAIFMPVRNANHSIHSYVNGNE 189
A++TEPI LCIGLQIERDRGYR+ T N QDGSY I+A+ MPVRNANHSIHSY NGNE
Sbjct: 137 ASLTEPIDLCIGLQIERDRGYRMKTPNNDQDGSYPIPIEAVSMPVRNANHSIHSYGNGNE 196
Query: 188 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCH 9
KQEILFLEIWTNGSLTPKEAL+EAS NLIDLFIPFLH EEE +N E++ ++ TLP FT
Sbjct: 197 KQEILFLEIWTNGSLTPKEALHEASHNLIDLFIPFLHGEEEDINLEDSLNRGTLPFFTFQ 256
Query: 8 D 6
D
Sbjct: 257 D 257
[108][TOP]
>UniRef100_Q7H6J2 DNA-directed RNA polymerase subunit alpha n=8 Tax=Hordeum
RepID=RPOA_HORBU
Length = 339
Score = 263 bits (672), Expect = 6e-69
Identities = 130/176 (73%), Positives = 147/176 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV VD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVETVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[109][TOP]
>UniRef100_Q539W2 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W2_9POAL
Length = 339
Score = 263 bits (671), Expect = 8e-69
Identities = 130/176 (73%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDMAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI L+I+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[110][TOP]
>UniRef100_B0FIU7 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta
lupuliformis RepID=B0FIU7_9ASTE
Length = 335
Score = 263 bits (671), Expect = 8e-69
Identities = 132/179 (73%), Positives = 151/179 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG DASI KGPGYVTA++IILPP V +VD+TQHI
Sbjct: 77 IAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAEDIILPPHVEVVDSTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A + EPI LCIGL+IER+RGY + T NF+DGSY IDA+FMPV+NANHSIHSY GNEKQ
Sbjct: 137 AWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPVQNANHSIHSY--GNEKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH E+E L+ E+ + + L FT +D
Sbjct: 195 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHLEDADRTIPLSPFTVYD 253
[111][TOP]
>UniRef100_P93964 DNA-directed RNA polymerase subunit alpha n=1 Tax=Secale strictum
RepID=RPOA_SECST
Length = 339
Score = 263 bits (671), Expect = 8e-69
Identities = 130/176 (73%), Positives = 147/176 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+ EPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLXEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFT 252
[112][TOP]
>UniRef100_Q8MAI8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Elymus hystrix
RepID=RPOA_ELYHY
Length = 339
Score = 263 bits (671), Expect = 8e-69
Identities = 131/176 (74%), Positives = 147/176 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[113][TOP]
>UniRef100_C8XU47 RNA polymerase alpha subunit n=1 Tax=Coix lacryma-jobi
RepID=C8XU47_COILA
Length = 339
Score = 262 bits (670), Expect = 1e-68
Identities = 129/176 (73%), Positives = 147/176 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD TQ I
Sbjct: 77 IVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTTQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+ EPI CI LQI+RDRGY KN QDGSY IDA+FMPVRN N+SI S NGNEK
Sbjct: 137 ANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE N++++T PL T
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTPPLLT 252
[114][TOP]
>UniRef100_P92439 DNA-directed RNA polymerase subunit alpha n=3 Tax=Thinopyrum
RepID=RPOA_THIBE
Length = 339
Score = 262 bits (670), Expect = 1e-68
Identities = 130/176 (73%), Positives = 147/176 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T P FT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPPFT 252
[115][TOP]
>UniRef100_Q8MAI6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Lophopyrum
elongatum RepID=RPOA_LOPEL
Length = 339
Score = 262 bits (670), Expect = 1e-68
Identities = 130/176 (73%), Positives = 147/176 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T P FT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPPFT 252
[116][TOP]
>UniRef100_Q3Y511 RNA polymerase subunit a n=1 Tax=Elymus mutabilis
RepID=Q3Y511_9POAL
Length = 339
Score = 262 bits (669), Expect = 1e-68
Identities = 130/176 (73%), Positives = 147/176 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NG EK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGIEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[117][TOP]
>UniRef100_Q6L370 DNA-directed RNA polymerase subunit alpha n=2 Tax=Saccharum
RepID=RPOA_SACHY
Length = 339
Score = 262 bits (669), Expect = 1e-68
Identities = 128/176 (72%), Positives = 147/176 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD TQ I
Sbjct: 77 IVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTTQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+ EP+ CI LQI+RDRGY KN QDGSY IDA+FMPVRN N+SI S NGNEK
Sbjct: 137 ANLREPVDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE N++++T PL T
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTPPLLT 252
[118][TOP]
>UniRef100_Q8SKY1 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cuscuta reflexa
RepID=RPOA_CUSRE
Length = 335
Score = 261 bits (668), Expect = 2e-68
Identities = 134/179 (74%), Positives = 150/179 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG DASI KGPGYVTA++IILPP V IVD+TQHI
Sbjct: 77 IAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAEDIILPPHVEIVDSTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI IGL+IER+ GY I T NF+DGSY IDA+FMPVRNANHSI+SY GNEKQ
Sbjct: 137 AWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPVRNANHSINSY--GNEKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L+ E+ +H + L FT +D
Sbjct: 195 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTIPLSPFTVYD 253
[119][TOP]
>UniRef100_B8Y305 RNA polymerase alpha subunit n=1 Tax=Festuca arundinacea
RepID=B8Y305_FESAR
Length = 346
Score = 261 bits (667), Expect = 2e-68
Identities = 130/176 (73%), Positives = 148/176 (84%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASI KGP Y+TAQ+IILPPSV IVD +Q I
Sbjct: 82 IAGIEESVQEILLNLKEIVLRSNLYGVRDASISVKGPRYITAQDIILPPSVEIVDTSQPI 141
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 142 ANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 201
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 202 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 257
[120][TOP]
>UniRef100_P09562 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zea mays
RepID=RPOA_MAIZE
Length = 339
Score = 260 bits (665), Expect = 4e-68
Identities = 128/176 (72%), Positives = 146/176 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD TQ I
Sbjct: 77 IVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTTQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+ EP+ CI LQI+RDR Y KN QDGSY IDA+FMPVRN N+SI S NGNEK
Sbjct: 137 ANLREPVDFCIELQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE +FE N++++T PL T
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTSFEENKNRLTPPLLT 252
[121][TOP]
>UniRef100_B3TN81 RNA polymerase alpha subunit (Fragment) n=1 Tax=Brachypodium
distachyon RepID=B3TN81_BRADI
Length = 338
Score = 260 bits (664), Expect = 5e-68
Identities = 129/176 (73%), Positives = 146/176 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP +TAQ+IILPPSV +VD Q I
Sbjct: 77 IAGIEESVQEILVNLKEIVLRSNLYGVRDASICVKGPRCITAQDIILPPSVEVVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGFEENKNRFTPPLFT 252
[122][TOP]
>UniRef100_B2ZE98 RNA polymerase alpha subunit n=1 Tax=Phyllostachys propinqua
RepID=B2ZE98_9POAL
Length = 339
Score = 260 bits (664), Expect = 5e-68
Identities = 130/176 (73%), Positives = 145/176 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY KN QDGSY IDA+ MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PL T
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLLT 252
[123][TOP]
>UniRef100_P93962 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psathyrostachys
stoloniformis RepID=RPOA_PSAST
Length = 339
Score = 260 bits (664), Expect = 5e-68
Identities = 129/176 (73%), Positives = 146/176 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTXQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY I + MPVRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFT 252
[124][TOP]
>UniRef100_Q539W1 RNA polymerase alpha subunit n=1 Tax=Psathyrostachys lanuginosa
RepID=Q539W1_9POAL
Length = 339
Score = 259 bits (662), Expect = 9e-68
Identities = 129/176 (73%), Positives = 146/176 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTXQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY+ KN+QDGSY IDA+ M VRN N+SI S NGNEK
Sbjct: 137 ANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PL T
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLLT 252
[125][TOP]
>UniRef100_Q5IBI2 RNA polymerase alpha subunit (Fragment) n=1 Tax=Plantago rugelii
RepID=Q5IBI2_9LAMI
Length = 308
Score = 259 bits (661), Expect = 1e-67
Identities = 133/179 (74%), Positives = 145/179 (81%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE V EILMNLKEIVL+SNLYG ASIC +GPGYVTAQ+IILPP V I DNTQHI
Sbjct: 62 IAGIQESVPEILMNLKEIVLRSNLYGTCGASICARGPGYVTAQDIILPPCVEIGDNTQHI 121
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI CIGL+IER RGY I + FQD SY IDA+FMPVRN NHSIHSY GNEKQ
Sbjct: 122 ARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNVNHSIHSY--GNEKQ 179
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLH EEE L ENN+ V+ F+ H+
Sbjct: 180 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLENNQDTVSFSPFSFHE 238
[126][TOP]
>UniRef100_Q6EW20 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nymphaea alba
RepID=RPOA_NYMAL
Length = 341
Score = 259 bits (661), Expect = 1e-67
Identities = 129/181 (71%), Positives = 149/181 (82%), Gaps = 2/181 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+VGI+E VHEILMNLK++V +S+LYG DASIC +GP +VTAQ+II PPSV IVD TQHI
Sbjct: 77 VVGIEESVHEILMNLKKMVFRSDLYGTLDASICVRGPRHVTAQDIISPPSVEIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEP+ LCI L+IER RGY T N+QDGSY IDA+ MPVRNANHSIHSY NGNEKQ
Sbjct: 137 AVLTEPVDLCIELKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL--NFENNEHKVTLPLFTCH 9
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE+ + N E+N + ++P F
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINRNMEDNLKRASVPFFAFD 256
Query: 8 D 6
D
Sbjct: 257 D 257
[127][TOP]
>UniRef100_A1E9V6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Sorghum bicolor
RepID=RPOA_SORBI
Length = 339
Score = 258 bits (660), Expect = 1e-67
Identities = 127/176 (72%), Positives = 146/176 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E + EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+ EPI CI LQI+RDRGY KN QDGSY IDA+FMPVRN N+SI S NGNEK
Sbjct: 137 ANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PF+H EEE +FE +++++T PL T
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEESKNRLTPPLLT 252
[128][TOP]
>UniRef100_C6GJ86 RpoA n=2 Tax=Bambuseae RepID=C6GJ86_BAMOL
Length = 339
Score = 257 bits (656), Expect = 4e-67
Identities = 129/176 (73%), Positives = 144/176 (81%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDMAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEPI CI LQI+RDRGY KN QDGSY IDA+ MPVRN N+SI NGNEK
Sbjct: 137 ANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVRNVNYSIFYCGNGNEKH 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PL T
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLLT 252
[129][TOP]
>UniRef100_P60314 DNA-directed RNA polymerase subunit alpha n=1 Tax=Amborella
trichopoda RepID=RPOA_AMBTC
Length = 334
Score = 254 bits (650), Expect = 2e-66
Identities = 127/179 (70%), Positives = 147/179 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGI+E VHEILMNLKEI+++S+LYG RDA IC +GP YVTAQ+II PPSV IVD TQHI
Sbjct: 77 IVGIEESVHEILMNLKEIIVRSDLYGTRDAFICVRGPKYVTAQDIISPPSVKIVDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI CIGL+IER+RGYR T QD SY IDA+ MPVRNAN+SI Y N NEKQ
Sbjct: 137 ASITEPINFCIGLEIERNRGYRTRTTN--QDASYPIDAVSMPVRNANYSIQCYGNENEKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE L+ +++++ T P F H+
Sbjct: 195 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEERDLHLDDDQNIFTAPFFPFHE 253
[130][TOP]
>UniRef100_B0FIU3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta nitida
RepID=B0FIU3_9ASTE
Length = 339
Score = 249 bits (635), Expect = 1e-64
Identities = 125/179 (69%), Positives = 148/179 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VH+ILMNLKEIVLKSNLYG DAS+ KGP YVTAQ+IILPP V IVD+TQHI
Sbjct: 77 IAGIQESVHDILMNLKEIVLKSNLYGTCDASLYIKGPRYVTAQDIILPPHVEIVDSTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI LCIGL+IER+RGY I FQ+ +Y++DA+FMPV N NHSI+SY GNEK+
Sbjct: 137 ASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPVLNVNHSIYSY--GNEKK 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EA++NL+DLFIPFL EEE LN E+ EH++ FT +D
Sbjct: 195 EILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNLEDAEHQIPFSPFTFYD 253
[131][TOP]
>UniRef100_Q2LIN9 RNA polymerase subunit (Fragment) n=1 Tax=Oryza granulata
RepID=Q2LIN9_9ORYZ
Length = 317
Score = 245 bits (626), Expect = 1e-63
Identities = 123/176 (69%), Positives = 141/176 (80%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+RDASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 57 IAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDMAQPI 116
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP+ I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI S NGN K
Sbjct: 117 ANLTEPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKY 176
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 177 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLS 232
[132][TOP]
>UniRef100_Q2LIP2 RNA polymerase subunit (Fragment) n=1 Tax=Oryza rhizomatis
RepID=Q2LIP2_9ORYZ
Length = 317
Score = 244 bits (622), Expect = 4e-63
Identities = 122/176 (69%), Positives = 140/176 (79%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 57 IAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPI 116
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI S NGN K
Sbjct: 117 ANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKY 176
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 177 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENQNRFTSPLLS 232
[133][TOP]
>UniRef100_Q2LIP0 RNA polymerase subunit (Fragment) n=2 Tax=Oryza RepID=Q2LIP0_9ORYZ
Length = 317
Score = 243 bits (621), Expect = 5e-63
Identities = 122/176 (69%), Positives = 140/176 (79%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 57 IAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPI 116
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI S NGN K
Sbjct: 117 ANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKY 176
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 177 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLS 232
[134][TOP]
>UniRef100_Q2LIP1 RNA polymerase subunit (Fragment) n=1 Tax=Oryza punctata
RepID=Q2LIP1_ORYPU
Length = 317
Score = 243 bits (619), Expect = 8e-63
Identities = 122/176 (69%), Positives = 140/176 (79%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R+ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 57 IAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPI 116
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI S NGN K
Sbjct: 117 ANLTEPEDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKY 176
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 177 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLS 232
[135][TOP]
>UniRef100_UPI0000DD8D71 Os01g0789400 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8D71
Length = 425
Score = 241 bits (616), Expect = 2e-62
Identities = 121/176 (68%), Positives = 139/176 (78%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 165 IAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPI 224
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI + NGN K
Sbjct: 225 ANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKY 284
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 285 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLS 340
[136][TOP]
>UniRef100_Q8S1Q6 Chloroplast RNA polymerase alpha chain n=1 Tax=Oryza sativa
Japonica Group RepID=Q8S1Q6_ORYSJ
Length = 337
Score = 241 bits (616), Expect = 2e-62
Identities = 121/176 (68%), Positives = 139/176 (78%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI + NGN K
Sbjct: 137 ANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKY 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLS 252
[137][TOP]
>UniRef100_Q7DNA8 OSJNBa0061C08.8 protein n=2 Tax=Oryza sativa RepID=Q7DNA8_ORYSJ
Length = 446
Score = 241 bits (616), Expect = 2e-62
Identities = 121/176 (68%), Positives = 139/176 (78%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 186 IAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPI 245
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI + NGN K
Sbjct: 246 ANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKY 305
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 306 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLS 361
[138][TOP]
>UniRef100_Q2LIP7 RNA polymerase subunit (Fragment) n=1 Tax=Oryza sativa
RepID=Q2LIP7_ORYSA
Length = 317
Score = 241 bits (616), Expect = 2e-62
Identities = 121/176 (68%), Positives = 139/176 (78%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 57 IAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPI 116
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI + NGN K
Sbjct: 117 ANLTEPTDFHIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKY 176
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 177 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLS 232
[139][TOP]
>UniRef100_P0C500 DNA-directed RNA polymerase subunit alpha n=7 Tax=Oryza
RepID=RPOA_ORYSJ
Length = 337
Score = 241 bits (616), Expect = 2e-62
Identities = 121/176 (68%), Positives = 139/176 (78%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 77 IAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI + NGN K
Sbjct: 137 ANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKY 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 197 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLS 252
[140][TOP]
>UniRef100_Q7G6A7 DNA-directed RNA polymerase alpha chain, putative, expressed n=2
Tax=Oryza sativa RepID=Q7G6A7_ORYSJ
Length = 446
Score = 240 bits (613), Expect = 4e-62
Identities = 120/176 (68%), Positives = 139/176 (78%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 186 IAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPI 245
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI + NGN +
Sbjct: 246 ANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNARY 305
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 306 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLS 361
[141][TOP]
>UniRef100_A9QC21 RNA polymerase alpha subunit (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QC21_9ASTR
Length = 332
Score = 240 bits (612), Expect = 5e-62
Identities = 125/179 (69%), Positives = 144/179 (80%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG +ASIC KGPGYVTAQ+II PP V IVDNTQHI
Sbjct: 77 IRGIQESVHEILMNLKEIVLRSNLYGTCEASICVKGPGYVTAQDIISPPYVEIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++TEPI+L I LQIE++R ++ FQDGSY I A+ MPVR+ N+SIHS +GN KQ
Sbjct: 137 ASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPVRHMNYSIHS--SGNGKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHD 6
EILFLEIWTNGSLTPKEAL+EA RNLIDLFIPFLH EE N ENN+ ++ P FT +D
Sbjct: 195 EILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEG--NLENNQDRIPFPSFTFYD 251
[142][TOP]
>UniRef100_B0FIU4 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta epilinum
RepID=B0FIU4_9ASTE
Length = 330
Score = 239 bits (611), Expect = 7e-62
Identities = 125/172 (72%), Positives = 138/172 (80%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLYG DASIC KGP +VTAQ+IILPP V IVDNTQHI
Sbjct: 77 IGGIQESVHEILMNLKEIVLRSNLYGTCDASICIKGPRHVTAQDIILPPHVQIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI IGL+IER+RGY +F DG Y IDA+FMPV+NANHSIHSY GNEKQ
Sbjct: 137 AWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPVQNANHSIHSY--GNEKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTL 27
EILFLEIWTNGSLTPKEAL+EA+R LID FIPF H EEE L + EH + L
Sbjct: 195 EILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYLADAEHTIPL 246
[143][TOP]
>UniRef100_Q2LIP5 RNA polymerase subunit (Fragment) n=1 Tax=Oryza glumipatula
RepID=Q2LIP5_9ORYZ
Length = 317
Score = 239 bits (610), Expect = 9e-62
Identities = 120/176 (68%), Positives = 138/176 (78%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 57 IAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPI 116
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI + NGN K
Sbjct: 117 ANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKY 176
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSLTP EALYEASRNLIDLF+PFLH EEE F+ N+++ T PL +
Sbjct: 177 EILFLEIWTNGSLTPMEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLS 232
[144][TOP]
>UniRef100_A6H5L3 DNA-directed RNA polymerase subunit alpha n=2 Tax=Cycas
RepID=RPOA_CYCTA
Length = 340
Score = 236 bits (602), Expect = 8e-61
Identities = 117/176 (66%), Positives = 145/176 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+IL+NLKEIVL+S+ YG R+ASIC GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILINLKEIVLRSDPYGTREASICIVGPRNVTAQDIILPPSVRIIDATQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++T+ I I L IE+DRGYRI + KN+QDG + IDA+FMPVRNAN+SIHSY NGN+ Q
Sbjct: 137 ASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVRNANYSIHSYGNGNDIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFT 15
EILFLEIWTNGSL P+EALY ASRNLIDLFIPFL AEE+ ++ +N++ +P F+
Sbjct: 197 EILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDGMDNQNGSNMPSFS 252
[145][TOP]
>UniRef100_Q49C94 RpoA n=1 Tax=Cuscuta europaea RepID=Q49C94_CUSEU
Length = 329
Score = 235 bits (600), Expect = 1e-60
Identities = 123/173 (71%), Positives = 138/173 (79%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLY DASIC KGP +VTAQ+IILPP V IVDNTQHI
Sbjct: 77 IGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQDIILPPHVQIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI IGL+IER+RGY +F DGSY IDA+FMPV+NANHSIHSY GNEKQ
Sbjct: 137 AWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHSY--GNEKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLP 24
EILFLEIWTNGSLTPKEAL+E++R LID FIPF EEE L + +H + LP
Sbjct: 195 EILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIXLP 247
[146][TOP]
>UniRef100_B0FIU5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cuscuta europaea
RepID=B0FIU5_CUSEU
Length = 329
Score = 235 bits (600), Expect = 1e-60
Identities = 123/173 (71%), Positives = 138/173 (79%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VHEILMNLKEIVL+SNLY DASIC KGP +VTAQ+IILPP V IVDNTQHI
Sbjct: 77 IGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQDIILPPHVQIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +TEPI IGL+IER+RGY +F DGSY IDA+FMPV+NANHSIHSY GNEKQ
Sbjct: 137 AWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQNANHSIHSY--GNEKQ 194
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLP 24
EILFLEIWTNGSLTPKEAL+E++R LID FIPF EEE L + +H + LP
Sbjct: 195 EILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLADAKHTIPLP 247
[147][TOP]
>UniRef100_B7T2T8 RNA polymerase alpha subunit n=1 Tax=Erodium chrysanthum
RepID=B7T2T8_9ROSI
Length = 329
Score = 234 bits (598), Expect = 2e-60
Identities = 122/171 (71%), Positives = 141/171 (82%), Gaps = 3/171 (1%)
Frame = -2
Query: 539 VGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIA 360
VGIQE V+EI+MNLKEIVL+S+LYG RDASIC +GP VTAQ+IILPPSV IVDNTQHI
Sbjct: 78 VGIQESVYEIVMNLKEIVLRSSLYGTRDASICVRGPRDVTAQDIILPPSVSIVDNTQHIV 137
Query: 359 NVTEPIQLCIGLQIERDRGY--RINTLKNFQD-GSYNIDAIFMPVRNANHSIHSYVNGNE 189
+TEPI+ C+ LQIER+RGY RI T N D Y IDA+FMPV+N NHSIHSY NG+
Sbjct: 138 TLTEPIEFCVALQIERNRGYSLRIPTPNNSHDERGYPIDAVFMPVKNVNHSIHSYENGS- 196
Query: 188 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHK 36
E+LF EIWTNGSLTPKEAL EASR LI+LFIPFLHAEEEK +FENN+++
Sbjct: 197 -HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEEKPHFENNQNE 246
[148][TOP]
>UniRef100_B7T379 RNA polymerase alpha subunit n=1 Tax=Geranium carolinianum
RepID=B7T379_9ROSI
Length = 329
Score = 234 bits (597), Expect = 3e-60
Identities = 125/182 (68%), Positives = 142/182 (78%), Gaps = 5/182 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE ++EILMNLKEIVL+SNL G RDASIC +GP VTAQ+IILP S IVDNTQHI
Sbjct: 77 IVGIQESIYEILMNLKEIVLRSNLDGTRDASICVRGPRDVTAQDIILPNSAAIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIFMPVRNANHSIHSYVNGN 192
+TEPI CIGLQI+R+RGY +I NF D Y IDA+F+PV+N NHSIHSY NG+
Sbjct: 137 VTLTEPIDFCIGLQIDRNRGYSRKIPMPTNFHDDRGYPIDAVFLPVKNVNHSIHSYENGS 196
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN--NEHKVTLPLF 18
E+LFLEIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE +FEN NEH LP+
Sbjct: 197 --HEMLFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFHFENNQNEHTDELPID 254
Query: 17 TC 12
C
Sbjct: 255 LC 256
[149][TOP]
>UniRef100_B7T309 RNA polymerase alpha subunit n=1 Tax=Erodium texanum
RepID=B7T309_EROTE
Length = 328
Score = 234 bits (596), Expect = 4e-60
Identities = 118/174 (67%), Positives = 139/174 (79%), Gaps = 3/174 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+VGIQE V+EI+MNLKEIVL+SNLYG RDASIC +GP VTAQ+IILPPSV IVDNTQHI
Sbjct: 77 LVGIQESVYEIVMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSVAIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRIN---TLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGN 192
+TEPI C+GLQIER+RGY + + D Y IDA+FMPV+N NHSIH+Y NG+
Sbjct: 137 VTLTEPIDFCVGLQIERNRGYSMKIPMPTNSHDDRGYPIDAVFMPVKNVNHSIHAYENGS 196
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVT 30
E+LF EIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE + ENN+++ T
Sbjct: 197 --HEMLFFEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENSHLENNQNQHT 248
[150][TOP]
>UniRef100_UPI0000E123FA Os05g0292500 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000E123FA
Length = 351
Score = 231 bits (590), Expect = 2e-59
Identities = 117/163 (71%), Positives = 130/163 (79%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIVL+SNLYG+R ASIC KGP Y+TAQ+IILPPSV IVD Q I
Sbjct: 186 IAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILPPSVEIVDTAQPI 245
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
AN+TEP I L+I+RDRGY KN QDGSY IDA+ MPVRN N+SI + NGN K
Sbjct: 246 ANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKY 305
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 54
EILFLEIWTNGSLTPKEALYEASRNLIDLF+PFLH EEE F
Sbjct: 306 EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRF 348
[151][TOP]
>UniRef100_C3W219 RNA polymerase alpha subunit n=1 Tax=Pinus monticola
RepID=C3W219_PINMO
Length = 335
Score = 231 bits (589), Expect = 3e-59
Identities = 114/167 (68%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE Q
Sbjct: 137 ARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[152][TOP]
>UniRef100_C3W2E4 RNA polymerase alpha subunit n=1 Tax=Pinus peuce RepID=C3W2E4_PINPE
Length = 335
Score = 230 bits (587), Expect = 4e-59
Identities = 114/167 (68%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE Q
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[153][TOP]
>UniRef100_C3VYH6 RNA polymerase alpha subunit n=4 Tax=Strobus RepID=C3VYH6_PINST
Length = 335
Score = 230 bits (587), Expect = 4e-59
Identities = 114/167 (68%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE Q
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[154][TOP]
>UniRef100_C3VYB7 RNA polymerase alpha subunit n=1 Tax=Pinus squamata
RepID=C3VYB7_9CONI
Length = 335
Score = 230 bits (587), Expect = 4e-59
Identities = 114/167 (68%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE Q
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[155][TOP]
>UniRef100_C3TSB3 RNA polymerase alpha subunit n=1 Tax=Pinus krempfii
RepID=C3TSB3_PINKR
Length = 335
Score = 230 bits (587), Expect = 4e-59
Identities = 114/167 (68%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPKNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE Q
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[156][TOP]
>UniRef100_Q85X01 DNA-directed RNA polymerase subunit alpha n=5 Tax=Strobus
RepID=RPOA_PINKO
Length = 335
Score = 230 bits (587), Expect = 4e-59
Identities = 114/167 (68%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE Q
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[157][TOP]
>UniRef100_B7T3M1 RNA polymerase alpha subunit n=1 Tax=Geranium palmatum
RepID=B7T3M1_9ROSI
Length = 329
Score = 229 bits (585), Expect = 7e-59
Identities = 121/182 (66%), Positives = 140/182 (76%), Gaps = 5/182 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+VGIQE ++EILMNLKEIVL+S+LYG RDASIC +GP VTAQ+IILP S IVDNTQHI
Sbjct: 77 LVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTAQDIILPTSATIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIFMPVRNANHSIHSYVNGN 192
+TEPI C+GLQIER+RGY +I L N D Y ID++FMPV+N NHSIHSY NG
Sbjct: 137 VTITEPIDFCVGLQIERNRGYFIQIPMLTNLHDDRGYPIDSVFMPVKNVNHSIHSYENG- 195
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFEN--NEHKVTLPLF 18
+LFLEIWTNGSLTPKEAL EASR L +LFIPFLHAEE+ +FEN NEH LP+
Sbjct: 196 -IHAMLFLEIWTNGSLTPKEALREASRKLSNLFIPFLHAEEQNFHFENNQNEHTDELPID 254
Query: 17 TC 12
C
Sbjct: 255 FC 256
[158][TOP]
>UniRef100_C3W0T7 RNA polymerase alpha subunit n=1 Tax=Cedrus deodara
RepID=C3W0T7_CEDDE
Length = 335
Score = 229 bits (583), Expect = 1e-58
Identities = 113/175 (64%), Positives = 142/175 (81%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YG+R+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGVREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLF 18
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN +P F
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNRKGSNMPPF 251
[159][TOP]
>UniRef100_C1IXV8 RNA polymerase alpha subunit n=1 Tax=Pinus gerardiana
RepID=C1IXV8_PINGE
Length = 335
Score = 229 bits (583), Expect = 1e-58
Identities = 113/167 (67%), Positives = 139/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+ N+SIHSY +GNE Q
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDVNYSIHSYGSGNEIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[160][TOP]
>UniRef100_C3W150 RNA polymerase alpha subunit n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W150_PINLE
Length = 335
Score = 228 bits (582), Expect = 2e-58
Identities = 113/167 (67%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[161][TOP]
>UniRef100_C3W0G5 RNA polymerase alpha subunit n=1 Tax=Pinus banksiana
RepID=C3W0G5_PINBN
Length = 335
Score = 228 bits (582), Expect = 2e-58
Identities = 113/167 (67%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[162][TOP]
>UniRef100_C3VZ24 RNA polymerase alpha subunit n=2 Tax=Pinus torreyana
RepID=C3VZ24_PINTO
Length = 335
Score = 228 bits (582), Expect = 2e-58
Identities = 113/167 (67%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[163][TOP]
>UniRef100_C3VXH3 RNA polymerase alpha subunit n=2 Tax=Pinus RepID=C3VXH3_PINPO
Length = 335
Score = 228 bits (582), Expect = 2e-58
Identities = 113/167 (67%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[164][TOP]
>UniRef100_C1IXP0 RNA polymerase alpha subunit n=1 Tax=Pinus contorta
RepID=C1IXP0_PINCO
Length = 335
Score = 228 bits (582), Expect = 2e-58
Identities = 113/167 (67%), Positives = 140/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[165][TOP]
>UniRef100_C3VZR7 RNA polymerase alpha subunit n=1 Tax=Pinus aristata
RepID=C3VZR7_9CONI
Length = 335
Score = 228 bits (581), Expect = 2e-58
Identities = 113/167 (67%), Positives = 139/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE Q
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKK 243
[166][TOP]
>UniRef100_C3VZJ9 RNA polymerase alpha subunit n=1 Tax=Pinus albicaulis
RepID=C3VZJ9_9CONI
Length = 335
Score = 228 bits (581), Expect = 2e-58
Identities = 113/167 (67%), Positives = 139/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE Q
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKK 243
[167][TOP]
>UniRef100_C3VXZ8 RNA polymerase alpha subunit n=1 Tax=Pinus rzedowskii
RepID=C3VXZ8_PINRZ
Length = 335
Score = 228 bits (581), Expect = 2e-58
Identities = 113/167 (67%), Positives = 139/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE Q
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ N +
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNKK 243
[168][TOP]
>UniRef100_C3W2L0 RNA polymerase alpha subunit n=1 Tax=Pinus pinaster
RepID=C3W2L0_PINPS
Length = 335
Score = 227 bits (578), Expect = 5e-58
Identities = 112/167 (67%), Positives = 139/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[169][TOP]
>UniRef100_C3W1N1 RNA polymerase alpha subunit n=1 Tax=Larix occidentalis
RepID=C3W1N1_LAROX
Length = 335
Score = 227 bits (578), Expect = 5e-58
Identities = 113/175 (64%), Positives = 141/175 (80%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLF 18
E+LFLEIWTNG LTP+EALYEASRNLIDL IPFLH EE+ ++ NN +P F
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNNRKGSNMPPF 251
[170][TOP]
>UniRef100_C3VXT2 RNA polymerase alpha subunit n=1 Tax=Pinus resinosa
RepID=C3VXT2_PINRE
Length = 335
Score = 227 bits (578), Expect = 5e-58
Identities = 112/167 (67%), Positives = 139/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[171][TOP]
>UniRef100_P41629 DNA-directed RNA polymerase subunit alpha n=2 Tax=Pinus thunbergii
RepID=RPOA_PINTH
Length = 335
Score = 227 bits (578), Expect = 5e-58
Identities = 112/167 (67%), Positives = 139/167 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[172][TOP]
>UniRef100_C3W0M8 RNA polymerase alpha subunit n=1 Tax=Pinus canariensis
RepID=C3W0M8_9CONI
Length = 335
Score = 225 bits (574), Expect = 1e-57
Identities = 111/167 (66%), Positives = 138/167 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+ N+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDVNYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[173][TOP]
>UniRef100_C1IXH8 RNA polymerase alpha subunit n=1 Tax=Picea sitchensis
RepID=C1IXH8_PICSI
Length = 336
Score = 225 bits (574), Expect = 1e-57
Identities = 113/175 (64%), Positives = 140/175 (80%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR ASIC GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIRGASICIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLF 18
E+LFLEIWTNG LTP+EAL EASR LI+LFIPFLH EE+ ++ NN +P F
Sbjct: 197 EVLFLEIWTNGGLTPREALSEASRILIELFIPFLHGEEQNIDGMNNRKGSNMPPF 251
[174][TOP]
>UniRef100_B7ZIR8 RNA polymerase alpha chain n=1 Tax=Keteleeria davidiana
RepID=B7ZIR8_KETDA
Length = 336
Score = 225 bits (574), Expect = 1e-57
Identities = 111/166 (66%), Positives = 138/166 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 45
E+LFLEIWTNG LTP+EALYEASRNLID FIPFLH EE+ ++ NN
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNIDGINN 242
[175][TOP]
>UniRef100_C3W1V8 RNA polymerase alpha subunit n=1 Tax=Pinus merkusii
RepID=C3W1V8_9CONI
Length = 335
Score = 225 bits (573), Expect = 2e-57
Identities = 111/167 (66%), Positives = 138/167 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIV +S+ YGIR+ASI GP VTAQ+IILPPSV +D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVFRSDSYGIREASIYIVGPRNVTAQDIILPPSVKTIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[176][TOP]
>UniRef100_C3VZD6 RNA polymerase alpha subunit n=1 Tax=Abies firma RepID=C3VZD6_ABIFI
Length = 336
Score = 225 bits (573), Expect = 2e-57
Identities = 111/166 (66%), Positives = 138/166 (83%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLKEIVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I L+IE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 45
E+LFLEIWTNG LTP+EALYEASRNLIDL IPFLH EE+ ++ NN
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGMNN 242
[177][TOP]
>UniRef100_C3VYP0 RNA polymerase alpha subunit n=1 Tax=Pinus taeda RepID=C3VYP0_PINTA
Length = 335
Score = 224 bits (570), Expect = 4e-57
Identities = 111/167 (66%), Positives = 138/167 (82%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLK IVL+S+ YGI +ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IIGIEESVHDILMNLKXIVLRSDSYGIXEASIYIVGPRNVTAQDIILPPSVKIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I I LQIE++RGY I++ N+QDG + IDA+FMPVR+AN+SIHSY +GNE +
Sbjct: 137 ARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+LFLEIWTNG LTP+EALYEASRNLIDLFIPFLH EE+ ++ NN+
Sbjct: 197 EVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNK 243
[178][TOP]
>UniRef100_B7T3F0 RNA polymerase alpha subunit n=1 Tax=Geranium macrorrhizum
RepID=B7T3F0_9ROSI
Length = 329
Score = 224 bits (570), Expect = 4e-57
Identities = 116/174 (66%), Positives = 137/174 (78%), Gaps = 3/174 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+VGIQE ++EILMNLKEIVL+S+LYG RDASIC +GP VT+Q+IILP IVDNTQHI
Sbjct: 77 LVGIQESIYEILMNLKEIVLRSHLYGTRDASICVRGPRDVTSQDIILPTFATIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGY--RINTLKNFQDG-SYNIDAIFMPVRNANHSIHSYVNGN 192
+TEPI C+GLQIER+RGY +I L N D Y IDA+FMPV+N NHSIHSY NG
Sbjct: 137 VTLTEPIDFCVGLQIERNRGYFIQIPMLSNLHDDRGYPIDAVFMPVKNVNHSIHSYENG- 195
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVT 30
+LFLEIWTNGSLTPKEAL ASR LI+LFIPFLHAEE+ +FENN+++ T
Sbjct: 196 -IHAMLFLEIWTNGSLTPKEALRGASRKLINLFIPFLHAEEQNCHFENNQNEHT 248
[179][TOP]
>UniRef100_B7T3U2 RNA polymerase alpha subunit n=1 Tax=Monsonia speciosa
RepID=B7T3U2_9ROSI
Length = 331
Score = 223 bits (569), Expect = 5e-57
Identities = 120/184 (65%), Positives = 139/184 (75%), Gaps = 7/184 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E ++EILMNLKEIVL+SNLYG RDASIC +GP VTAQ+IILPPS IVDNTQHI
Sbjct: 77 IAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSTAIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRIN----TLKNFQDGSYNIDAIFMPVRNANHSIHSYVNG 195
+TEPI C+GL+IER RGY I T D +Y IDA+FMPVRN NHSIHSY G
Sbjct: 137 FTLTEPIDFCVGLKIERGRGYSIKIPMPTDLFHHDSAYPIDAVFMPVRNVNHSIHSYERG 196
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF-ENNEHKVT--LP 24
+ E+LFLEIWTNGSLTPKEAL EASR LI+L +PFLHAEEE ENN+++ T LP
Sbjct: 197 S--HEMLFLEIWTNGSLTPKEALREASRKLINLLMPFLHAEEENFYLVENNQNQDTEELP 254
Query: 23 LFTC 12
+ C
Sbjct: 255 IDLC 258
[180][TOP]
>UniRef100_B7T413 RNA polymerase alpha subunit n=1 Tax=Monsonia vanderietiae
RepID=B7T413_9ROSI
Length = 333
Score = 220 bits (560), Expect = 6e-56
Identities = 119/186 (63%), Positives = 137/186 (73%), Gaps = 9/186 (4%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ GI+E ++EILMNLKEIVL+SNLYG RDASIC +GP VTAQ+IILPPS IVDNTQHI
Sbjct: 77 MAGIKESIYEILMNLKEIVLRSNLYGTRDASICVRGPRDVTAQDIILPPSTAIVDNTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRIN----TLKNFQDGSY--NIDAIFMPVRNANHSIHSYV 201
+TEPI C+ L+IER RGY I T D Y IDA+FMPVRN NHSI+SY
Sbjct: 137 VTLTEPIDFCVELKIERGRGYSIKIPMPTNPFHHDSGYPIPIDAVFMPVRNVNHSIYSYK 196
Query: 200 NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK---LNFENNEHKVT 30
G+ +EILFLEIWTNGSLTPKEAL EASR LI+LFIPFLHAEEE L N+H
Sbjct: 197 RGS--REILFLEIWTNGSLTPKEALREASRKLINLFIPFLHAEEENFYLLENNQNQHTEE 254
Query: 29 LPLFTC 12
LP+ +C
Sbjct: 255 LPIDSC 260
[181][TOP]
>UniRef100_Q5EFY4 RNA polymerase alpha subunit n=1 Tax=Dendroligotrichum dendroides
RepID=Q5EFY4_9BRYO
Length = 340
Score = 210 bits (535), Expect = 5e-53
Identities = 107/170 (62%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE H+IL+NLKEIVLKSN Y + A + GP +TAQ+IILPPSV I+D TQ+I
Sbjct: 77 IVGIQESAHDILINLKEIVLKSNSYETQKAFLSILGPKKITAQDIILPPSVKIIDTTQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+PI L I L+I++D GYRI DG ++IDAIFMP+RNAN+S+HS+ N N+ Q
Sbjct: 137 ATITKPIHLDIELEIDKDCGYRIXDSVKSIDGYFSIDAIFMPIRNANYSVHSFENNNKIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLNFENNEHK 36
EILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLH E +E +N E+K
Sbjct: 197 EILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHTEKKETINGLKTEYK 246
[182][TOP]
>UniRef100_Q4FGA3 RNA polymerase alpha chain (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FGA3_GINBI
Length = 337
Score = 209 bits (532), Expect = 1e-52
Identities = 109/175 (62%), Positives = 135/175 (77%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+I +NL+ IVL+S+ YGIR+ASI GP VTAQ+IILPPSV I+D TQHI
Sbjct: 77 IMGIEESVHDISINLRGIVLQSDPYGIREASIYSVGPRDVTAQDIILPPSVRIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++ E I I QI +DRGYRI + N +DG ++ DA+ MPVRNAN+SIHSY NGNE Q
Sbjct: 137 ASLKESITSDIRSQIGKDRGYRIQSPNNSRDGIFSTDAVSMPVRNANYSIHSYGNGNEMQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLF 18
EILF EIWTNGSL P EALYEASRNLIDLFIPF+ AEE+ ++ +N + + LF
Sbjct: 197 EILFSEIWTNGSLAPGEALYEASRNLIDLFIPFMRAEEQNIDGIDNWNGYNMSLF 251
[183][TOP]
>UniRef100_Q5EFY2 RNA polymerase alpha subunit n=1 Tax=Polytrichum pallidisetum
RepID=Q5EFY2_9BRYO
Length = 338
Score = 207 bits (528), Expect = 3e-52
Identities = 105/160 (65%), Positives = 128/160 (80%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
IVGIQE VH+IL+NLKEIVLKSN + A I GP +TAQ+IILPPSV I+D TQ+I
Sbjct: 77 IVGIQESVHDILINLKEIVLKSNSSETQKAFISILGPKKITAQDIILPPSVKIIDTTQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+PI L I L+IE+D GYRI DG + IDAIFMP+RNAN+S+HS+ N N+ Q
Sbjct: 137 ATITKPIHLDIELEIEKDCGYRIQDSVKSIDGYFPIDAIFMPIRNANYSVHSFENNNKIQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 63
EILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLH E+++
Sbjct: 197 EILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHPEKKE 236
[184][TOP]
>UniRef100_Q5EFY8 RNA polymerase alpha subunit n=1 Tax=Oedipodium griffithianum
RepID=Q5EFY8_9BRYO
Length = 340
Score = 206 bits (525), Expect = 7e-52
Identities = 104/161 (64%), Positives = 129/161 (80%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VH+IL+NLKEIVL+SN Y + A I GP VTAQ+IILPPSV I+D TQ+I
Sbjct: 77 IAGIQESVHDILINLKEIVLRSNSYETQKAFISILGPKKVTAQDIILPPSVKIIDTTQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I L I L+IE+D GYRI DG + IDAIFMP+RNAN+S+HS+ + N+ Q
Sbjct: 137 ATLTKTIHLDIELEIEKDCGYRIQDSIKSTDGHFPIDAIFMPIRNANYSVHSFEHENKTQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 60
EILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE++++
Sbjct: 197 EILFIEIWTNGSITPKEALYEASRSLIDLFIPFLHAEKKEI 237
[185][TOP]
>UniRef100_Q60F88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Takakia
lepidozioides RepID=RPOA_TAKLE
Length = 341
Score = 205 bits (521), Expect = 2e-51
Identities = 102/160 (63%), Positives = 129/160 (80%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GIQE VH++L+NL EIVL+S+ Y + A I GP VTAQ+IILPPSV I+D TQ+I
Sbjct: 77 ILGIQESVHDVLINLGEIVLRSDSYETQKAFISILGPKKVTAQDIILPPSVKIIDTTQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A VT+ I L I L+IE+D GYRI DG++ +DA+FMP+RN N+S+HS+ NGNE Q
Sbjct: 137 ATVTKAIHLDIELKIEKDFGYRIEDPIKSADGNFPVDAVFMPIRNVNYSVHSFENGNETQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK 63
EILFLEIWTNGS+TPKEALYEASR+LI+LFIPFLHAE+++
Sbjct: 197 EILFLEIWTNGSVTPKEALYEASRSLINLFIPFLHAEKKE 236
[186][TOP]
>UniRef100_B1VKC7 RNA polymerase alpha subunit n=1 Tax=Cryptomeria japonica
RepID=B1VKC7_CRYJA
Length = 342
Score = 200 bits (508), Expect = 6e-50
Identities = 105/176 (59%), Positives = 127/176 (72%), Gaps = 10/176 (5%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E +HEILMNLKEIVL+S+ YGIR+ SI GP VTAQ+I+LPPSV I+D TQHI
Sbjct: 77 IIGIEESIHEILMNLKEIVLRSDAYGIREGSIHVVGPKKVTAQDIMLPPSVRIIDTTQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----------YNIDAIFMPVRNANHSI 213
AN+ + I L I LQIE+ RGY I N+ + IDA F PV+N N+SI
Sbjct: 137 ANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVFPIDAAFAPVQNVNYSI 196
Query: 212 HSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 45
HSY + NE QEILFLEIWTNG L PKEALYEASRNLID F+PFL+A+EE + N+
Sbjct: 197 HSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPFLNAKEENSDGTNS 252
[187][TOP]
>UniRef100_A2T365 DNA-directed RNA polymerase subunit alpha n=1 Tax=Angiopteris
evecta RepID=RPOA_ANGEV
Length = 341
Score = 200 bits (508), Expect = 6e-50
Identities = 95/167 (56%), Positives = 131/167 (78%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E +++IL+N KEIVL+S+ Y + A I GP +TA++I+LPPSV +D++QHI
Sbjct: 77 IIGIEESINDILINFKEIVLRSDSYETQKAYISITGPKDITAEDILLPPSVQAIDDSQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ I L I ++I++DRGYRI K Q G + IDA+FMP+R AN+S+HS+ N + Q
Sbjct: 137 ATITKDITLDIEIEIQKDRGYRIQDSKESQAGEFFIDAVFMPIRKANYSVHSFGNNKKFQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
EILF+EIWT+GSLTPKEALYEASRNLIDLF+PFLH EEE++ + +E
Sbjct: 197 EILFIEIWTDGSLTPKEALYEASRNLIDLFLPFLHTEEEEIISDRDE 243
[188][TOP]
>UniRef100_Q85A01 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anthoceros
formosae RepID=RPOA_ANTFO
Length = 340
Score = 197 bits (501), Expect = 4e-49
Identities = 95/162 (58%), Positives = 127/162 (78%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GIQE VH+IL+NLKEIVLKSN Y ++ASI GP VTA++I+LP SV ++D TQHI
Sbjct: 77 IMGIQESVHDILINLKEIVLKSNSYKTQEASISILGPKRVTAEDIVLPSSVEVIDATQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ + I L I +DRGYRI ++DG++ ++A F P+RNAN+S+HS+ N EKQ
Sbjct: 137 ATITKAVYFNIKLGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNANYSVHSFENEKEKQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN 57
EILF+E+WTNGSLTPKEAL EAS++LI+LFIP LH ++E+ N
Sbjct: 197 EILFIEVWTNGSLTPKEALREASQSLINLFIPLLHEKKEREN 238
[189][TOP]
>UniRef100_Q5EFZ1 RNA polymerase alpha subunit n=1 Tax=Buxbaumia aphylla
RepID=Q5EFZ1_9BRYO
Length = 340
Score = 197 bits (500), Expect = 5e-49
Identities = 102/172 (59%), Positives = 130/172 (75%), Gaps = 1/172 (0%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE VH+I +N KEIVL+SN + A I GP +TAQ+IILPPSV I+D Q+I
Sbjct: 77 IAGIQESVHDISINSKEIVLESNSSETQKAFISILGPKKITAQDIILPPSVKIIDGKQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T+ IQL I L+IE+D GYRI + + IDAIFMP+RNAN+S+HS+ N N+ Q
Sbjct: 137 ATLTKAIQLDIELEIEKDYGYRIQNSNKSTNSHFFIDAIFMPIRNANYSVHSFENENKTQ 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLNFENNEHKVT 30
E+LF+EIWTNGS+TPK+ALYEASR+LIDLFIPFLHAE E +N NE+K++
Sbjct: 197 EMLFIEIWTNGSITPKDALYEASRSLIDLFIPFLHAERREIINELENEYKLS 248
[190][TOP]
>UniRef100_Q5EG69 RNA polymerase alpha subunit n=1 Tax=Sphagnum fimbriatum
RepID=Q5EG69_9BRYO
Length = 338
Score = 195 bits (496), Expect = 2e-48
Identities = 100/169 (59%), Positives = 129/169 (76%), Gaps = 2/169 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKS--NLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQ 369
I+GIQE V +IL+NLKEIVLKS N + A + GP VTA++II PPSV ++D TQ
Sbjct: 78 ILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVTARDIIFPPSVEVIDTTQ 137
Query: 368 HIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE 189
+IA +T+ I L I L+IE+D GYR DG +++DA+F P+RNAN+S+HS+ N NE
Sbjct: 138 YIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVHSFENKNE 197
Query: 188 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE+E++ + NE
Sbjct: 198 TQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEVMHDKNE 246
[191][TOP]
>UniRef100_Q60F85 DNA-dependent RNA polymerase alpha subunit n=1 Tax=Sphagnum
girgensohnii RepID=Q60F85_9BRYO
Length = 341
Score = 191 bits (485), Expect = 3e-47
Identities = 97/163 (59%), Positives = 126/163 (77%), Gaps = 2/163 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKS--NLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQ 369
I+GIQE V +IL+NLKEIVLKS N + A + GP VTA++I+ PPSV ++D TQ
Sbjct: 78 ILGIQESVRDILINLKEIVLKSKSNSCETQKAFLSIFGPKEVTARDIVFPPSVEVIDTTQ 137
Query: 368 HIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE 189
+IA +T+ I L I L+IE+D GYR DG +++DA+F P+RNAN+S+HS+ N NE
Sbjct: 138 YIATLTKAIHLDIELKIEKDCGYRTQDSIKSADGYFSVDAVFTPIRNANYSVHSFENKNE 197
Query: 188 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 60
QEILF+EIWTNGS+TPKEALYEASR+LIDLFIPFLHAE+E++
Sbjct: 198 TQEILFIEIWTNGSVTPKEALYEASRSLIDLFIPFLHAEKEEV 240
[192][TOP]
>UniRef100_Q8WHZ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Psilotum nudum
RepID=RPOA_PSINU
Length = 340
Score = 185 bits (469), Expect = 2e-45
Identities = 98/169 (57%), Positives = 126/169 (74%), Gaps = 2/169 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+VGI+E +H+IL+NLKEIVL+S+ Y + ASI GP VTA +I+LP SV I+D +QHI
Sbjct: 77 LVGIKESIHDILINLKEIVLQSDSYETQKASISILGPRDVTAGDILLPTSVKIIDASQHI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T I L + L+IERD GYR LK Q G + IDA+F P+RNAN+SIHS+ + N+ +
Sbjct: 137 ATITTAIPLDVELRIERDCGYRTLNLKESQSGEFFIDALFTPIRNANYSIHSFESNNKVR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEK--LNFENNE 42
EILFLE+WTNGSLTP AL EASR+LIDLFI FL+ E+E+ ENNE
Sbjct: 197 EILFLEVWTNGSLTPGAALSEASRDLIDLFIIFLNMEKEESIKEIENNE 245
[193][TOP]
>UniRef100_Q9BBN0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marsilea
quadrifolia RepID=RPOA_MARQU
Length = 341
Score = 184 bits (466), Expect = 5e-45
Identities = 89/177 (50%), Positives = 129/177 (72%), Gaps = 1/177 (0%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ GIQE +H+IL+NLKEIVL+S+ G + A + GP VTA +I LPPSV ++D++Q+I
Sbjct: 77 VAGIQETIHDILVNLKEIVLRSDSDGNQKAILSVTGPKRVTAGDISLPPSVKVIDDSQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
+T+PI + I L IE D GYRI +L ++DG + +DA+FMPVRN N+S+H + +G E +
Sbjct: 137 VTITQPISVNIELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNVNYSVHPFGSGKEMR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFENNEHKVTLPLFT 15
EILF+E+WTNGSLTP EA+ +AS++ IDL PFLH + E + +FE+N +L F+
Sbjct: 197 EILFIEVWTNGSLTPTEAISKASKSSIDLLSPFLHTKHEDIPDFESNRDSSSLMKFS 253
[194][TOP]
>UniRef100_P06270 DNA-directed RNA polymerase subunit alpha n=1 Tax=Marchantia
polymorpha RepID=RPOA_MARPO
Length = 340
Score = 182 bits (461), Expect = 2e-44
Identities = 90/163 (55%), Positives = 125/163 (76%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+G+QE +H+IL+NLKEIVLKS + + A I GP +TAQ+I P + I+ Q+I
Sbjct: 77 IIGLQESIHDILINLKEIVLKSESFEPQKAYISVLGPKKITAQDIKGPSCIKIMIIAQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A + + I L I L IE+DRGYRI L+ +Q+G + +DA+FMP+RNAN+S+HS+ + + +
Sbjct: 137 ATLNKDILLEIELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNANYSVHSFESEKKIK 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNF 54
EILFLEIWT+GSLTPKEALYEASRNLIDLFIP +++E+++ NF
Sbjct: 197 EILFLEIWTDGSLTPKEALYEASRNLIDLFIPLINSEKKEKNF 239
[195][TOP]
>UniRef100_A6BM49 RNA polymerase alpha subunit n=2 Tax=Spermatophyta
RepID=A6BM49_BRANA
Length = 326
Score = 177 bits (450), Expect = 3e-43
Identities = 91/159 (57%), Positives = 116/159 (72%), Gaps = 2/159 (1%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIAN 357
GI+E VH+IL+NLKEIVLKS LYGI ASIC GP VTAQ+IILP S+ I+D TQHIA+
Sbjct: 80 GIKESVHDILLNLKEIVLKSELYGIHKASICTVGPRNVTAQDIILPSSIKIIDGTQHIAS 139
Query: 356 VTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
+T+ + + L IER++GY I + + ++G + IDA MPVRN N SIHSY + N+ +
Sbjct: 140 LTKSVPFNVMLTIERNQGYAIPSQSSRRHKNGLFPIDAPCMPVRNVNFSIHSYKSENDIR 199
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 66
E+L EIWTNG LTP+EA YEA LIDL +P LH EE+
Sbjct: 200 EMLIFEIWTNGGLTPREAFYEACWKLIDLIVPLLHMEED 238
[196][TOP]
>UniRef100_B7ZII6 RNA polymerase alpha chain n=1 Tax=Ephedra equisetina
RepID=B7ZII6_EPHEU
Length = 258
Score = 175 bits (443), Expect = 2e-42
Identities = 88/169 (52%), Positives = 122/169 (72%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+ILMNLK+IVL+S LYGI +ASIC GP VTAQ+IILP S+ I+D+TQHI
Sbjct: 78 IIGIKESVHDILMNLKQIVLRSELYGIHEASICTVGPKNVTAQDIILPSSIQIIDDTQHI 137
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A++T+ I + L+IE+ + Y I +K +D + ID + +PV+N N SIHSY + + Q
Sbjct: 138 ASLTKRIPFNVTLKIEKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIHSYKSSDNIQ 197
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHK 36
E+L EIWTNG LTP+E +YEA +L+DL IP L E+ N +N++ K
Sbjct: 198 EMLIFEIWTNGGLTPRETIYEACWSLLDLIIPLLCVEQ---NIKNSQKK 243
[197][TOP]
>UniRef100_B0YPQ7 RNA polymerase alpha subunit n=1 Tax=Aneura mirabilis
RepID=B0YPQ7_ANEMR
Length = 342
Score = 174 bits (441), Expect = 4e-42
Identities = 86/167 (51%), Positives = 122/167 (73%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E +H+IL+NLKEI+L+S+ + A IC GP VTA++I + ++DNTQ++
Sbjct: 78 INGIRESIHDILINLKEIILRSDSPEPQKAYICVSGPSEVTARDIQGSSLIHVIDNTQYV 137
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
A +T I L I L IE+DRGYR+ + +++G + IDA+FMP+RNAN+S+HS+ + + +
Sbjct: 138 ATITGKISLDIELDIEKDRGYRMENSRKYREGFFPIDAVFMPIRNANYSVHSFGSREKTK 197
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
EIL LEIWTNGSLTP++ALYEASRNLIDLFIP ++ E+ N E
Sbjct: 198 EILLLEIWTNGSLTPEKALYEASRNLIDLFIPSMNPGGEEKNSGTKE 244
[198][TOP]
>UniRef100_C5HY86 RNA polymerase a-subunit n=1 Tax=Alsophila spinulosa
RepID=C5HY86_9FILI
Length = 338
Score = 170 bits (431), Expect = 5e-41
Identities = 85/177 (48%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GIQE +H+I +NLKE V +S+ ++A + GP VTA + LPPSV I+D++Q+I
Sbjct: 77 ITGIQETIHDISVNLKETVPRSDSNDSKEAFLSVTGPKRVTAGDTSLPPSVKIIDDSQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQ 183
+T+PI + I +IE+D GYRI ++DG + +DA+ MPVRN N+S+H + +G E +
Sbjct: 137 VTITQPISVNIESRIEKDCGYRIEEFNGYRDGEFPVDAVPMPVRNVNYSVHPFGSGREMR 196
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFENNEHKVTLPLFT 15
EI F+EIWTNGS TP EAL EAS+NLIDL IPFLH + E + +FE+ + L + +
Sbjct: 197 EISFIEIWTNGSPTPNEALCEASKNLIDLLIPFLHMKHEDVPHFEDEQDSSDLTILS 253
[199][TOP]
>UniRef100_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula
RepID=RPOA_HUPLU
Length = 336
Score = 168 bits (426), Expect = 2e-40
Identities = 83/167 (49%), Positives = 122/167 (73%), Gaps = 2/167 (1%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIAN 357
GIQE VH+IL+N KEIVLKS + A I GP VTAQ+I LP SV ++D QHIA
Sbjct: 82 GIQESVHDILINSKEIVLKSKSSEAQKAFISIVGPRRVTAQDIELPTSVEVIDPMQHIAT 141
Query: 356 VTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEK--Q 183
+T+ ++L I L+IE+D GYR + ++DG++ +DA+F P+R+ N+SIH + + ++ +
Sbjct: 142 ITKKVKLNIELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSVNYSIHCFESHDKSIMK 201
Query: 182 EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E+L EIW+NGS+TP+EA+YEASR+ I+LF+PFL AE+EK +F+ +
Sbjct: 202 EMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKEKEDFKGED 248
[200][TOP]
>UniRef100_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Adiantum
capillus-veneris RepID=RPOA_ADICA
Length = 345
Score = 168 bits (426), Expect = 2e-40
Identities = 88/174 (50%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLY-GIRDASICFKGPGYVTAQNIILPPSVVIVDNTQH 366
I G+QE +H++L+NLKEIVL+ + I++A + GP VTA ++ LPP V +DN+Q+
Sbjct: 77 ITGLQETIHDVLVNLKEIVLRGDSKEDIQEAFLSVTGPKEVTAGDLSLPPGVEAIDNSQY 136
Query: 365 IANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEK 186
IA +T+PI L I L+IE+D GYRI L G + IDA+FMPVRN N+SIH + +G
Sbjct: 137 IATITQPISLTIELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRNVNYSIHLFGSGRAT 196
Query: 185 QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLN-FENNEHKVTL 27
QEILF+EIWTNGSLTP EAL +AS L+DL FL+ ++ FEN E + L
Sbjct: 197 QEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDSLDL 250
[201][TOP]
>UniRef100_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2
Tax=Physcomitrella patens RepID=RPOA_PHYPA
Length = 450
Score = 164 bits (415), Expect = 4e-39
Identities = 86/169 (50%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIAN 357
G++E +IL+NLKE+V++S+ + A I GPG VTA +I+LPPS+ + D TQHIA
Sbjct: 191 GVEETPMDILVNLKELVIRSDSDEPQKAIISAIGPGPVTAGDIVLPPSLEVTDPTQHIAY 250
Query: 356 VTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE-KQE 180
+T+ + L I L +E+ GYR+ DG + ID++FMPVRNAN+S+HSY + + QE
Sbjct: 251 LTKEVSLDIELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANYSVHSYESEPDVTQE 310
Query: 179 ILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL-NFENNEHK 36
ILFLEIWTNGS+TP+EAL+EA+R LIDLF+PFLH +++++ N HK
Sbjct: 311 ILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKKEVTNSATKMHK 359
[202][TOP]
>UniRef100_C7B2H8 RNA polymerase alpha chain n=1 Tax=Selaginella moellendorffii
RepID=C7B2H8_9TRAC
Length = 247
Score = 154 bits (390), Expect = 3e-36
Identities = 84/158 (53%), Positives = 111/158 (70%), Gaps = 3/158 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGI-RDASICFKGPGYVTAQNIILPPSVVIVDNTQH 366
I G++E VH+ILMNLKEIVLK+N + ++A I GP VTAQ+I+LPPSV +D TQH
Sbjct: 77 IAGVRESVHDILMNLKEIVLKTNPFSAAQEAHIPIVGPRKVTAQDIVLPPSVGTMDPTQH 136
Query: 365 IANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVN--GN 192
IA +T I IGL++ER G+R + +Q GS DA+FMP+R+AN+SIH + G
Sbjct: 137 IATITRKIHSSIGLRVERGCGFRKRNMIEYQKGSLPPDAVFMPIRHANYSIHRLGSHGGG 196
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLH 78
+E+L LE T+GS TP+EA+YEASRNL +LF PF H
Sbjct: 197 IMKEMLLLEARTDGSPTPREAIYEASRNLANLFSPFPH 234
[203][TOP]
>UniRef100_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema
circumcarinatum RepID=RPOA_ZYGCR
Length = 356
Score = 140 bits (354), Expect = 4e-32
Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 1/168 (0%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIAN 357
GI+E +H+IL+NLK+IV KS+ ++ + F GPG VTAQ+I LPP V +VDNTQ+IA
Sbjct: 76 GIRESIHDILLNLKDIVFKSDTLERQEGILLFNGPGIVTAQHIKLPPVVQVVDNTQYIAR 135
Query: 356 VTEPIQLCIGLQIERDRGYR-INTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQE 180
+ P + I + +E + +NT+ + G + +DA PVRN N+SIHS G+ +QE
Sbjct: 136 LEMPTSIEIHITLENTKTCTSLNTMPTTK-GRFILDAALKPVRNMNYSIHSLGEGDMRQE 194
Query: 179 ILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHK 36
+L LE+WTNGSLTP+E + +AS+NL DL P L E + N HK
Sbjct: 195 MLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKV-ERYFQAKQNIHK 241
[204][TOP]
>UniRef100_B2Y1Z1 RNA polymerase alpha chain n=1 Tax=Welwitschia mirabilis
RepID=B2Y1Z1_WELMI
Length = 340
Score = 140 bits (352), Expect = 8e-32
Identities = 80/179 (44%), Positives = 115/179 (64%), Gaps = 5/179 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GI+E VH+I+MNL+EIV + L+GI A I GP VTAQ+IILPP + IVD TQHI
Sbjct: 81 ILGIEESVHDIIMNLREIVFRCELHGIHKAYIYTVGPKNVTAQDIILPPFIQIVDGTQHI 140
Query: 362 ANVTEPIQLCIGLQIERDRG---YRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGN 192
A++T+PI L + L+IE++ G I+ + + + +MPVR+ ++++ Y +
Sbjct: 141 ASITKPIHLHVTLKIEKNWGETTESIHPITKYFTRYIPTEIFYMPVRSVTYNVYFYKDEY 200
Query: 191 EKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPL 21
+ +IL E+WTNG LTPKEALYEA LIDL IP L + L+ E + K ++PL
Sbjct: 201 DIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLL--DVPLLHVEGSGVKESIPL 257
[205][TOP]
>UniRef100_A9SHY0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHY0_PHYPA
Length = 438
Score = 139 bits (351), Expect = 1e-31
Identities = 71/155 (45%), Positives = 108/155 (69%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIAN 357
GIQE V +IL+N++++ + SN + + A I GP V A +I+ PPS+V+ D +Q+IA
Sbjct: 180 GIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVVPDPSQNIAL 239
Query: 356 VTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEI 177
VT I + +++E+D GYRI +G + ID++FMPV AN+S+HS+ + +EI
Sbjct: 240 VTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFEVEDVTREI 299
Query: 176 LFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 72
LFLEI+TNGS++P+EAL EA+R+LIDL +P L +E
Sbjct: 300 LFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 334
[206][TOP]
>UniRef100_A9CP51 DNA-directed RNA polymerase alpha chain n=1 Tax=Physcomitrella
patens RepID=A9CP51_PHYPA
Length = 525
Score = 139 bits (351), Expect = 1e-31
Identities = 71/155 (45%), Positives = 108/155 (69%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIAN 357
GIQE V +IL+N++++ + SN + + A I GP V A +I+ PPS+V+ D +Q+IA
Sbjct: 267 GIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVVPDPSQNIAL 326
Query: 356 VTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEI 177
VT I + +++E+D GYRI +G + ID++FMPV AN+S+HS+ + +EI
Sbjct: 327 VTAAIPFNVEIEVEKDVGYRIVDPGKSTNGRFYIDSVFMPVVQANYSVHSFEVEDVTREI 386
Query: 176 LFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 72
LFLEI+TNGS++P+EAL EA+R+LIDL +P L +E
Sbjct: 387 LFLEIYTNGSISPEEALIEAARSLIDLLLPLLESE 421
[207][TOP]
>UniRef100_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris
RepID=RPOA_CHAVU
Length = 358
Score = 139 bits (351), Expect = 1e-31
Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 7/174 (4%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ G++E + +IL+NLKEIV K + I KGP +TA +I + P + I+D+ Q I
Sbjct: 74 LTGVRESIQDILLNLKEIVFKGVCDKTQKGFIFVKGPKKITASDIQIEPCIEILDSNQII 133
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVN-GNEK 186
A++TEPI + L IE+ G+R+ S++IDAIFMP+RN N+SIH G+ K
Sbjct: 134 AHLTEPIDFKVELTIEKSMGFRLQNATQISKDSFSIDAIFMPIRNVNYSIHPVEKAGDWK 193
Query: 185 QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL------NFENNE 42
E+L LEIWTNGS+TPKEA ++AS ++++F+ ++ + ++ NFE E
Sbjct: 194 SELLILEIWTNGSITPKEAFHQASEKIMNIFLSLSNSSDNQIQEKSTKNFEEKE 247
[208][TOP]
>UniRef100_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium
globosum RepID=RPOA_CHAGL
Length = 334
Score = 136 bits (342), Expect = 1e-30
Identities = 64/159 (40%), Positives = 105/159 (66%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIAN 357
G+QE VH+IL+NLK+I+L S+ GI + + GP V A ++ LP + IV+ Q+IA
Sbjct: 79 GVQESVHDILINLKKIILSSSFSGIFEGFLSVVGPKTVLASDLNLPSFIKIVNPDQYIAT 138
Query: 356 VTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEI 177
V +PI + + I++ +GY + + + G + +D +F+P+R+ N+SIHS+ + +E
Sbjct: 139 VNKPINFNLQIYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSVNYSIHSFEDEKATKEF 198
Query: 176 LFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKL 60
L +E+WTNGS+ PKEA+ EAS NL++LF P + E ++L
Sbjct: 199 LIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQEYQQL 237
[209][TOP]
>UniRef100_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima
RepID=RPOA_SPIMX
Length = 344
Score = 134 bits (338), Expect = 3e-30
Identities = 70/157 (44%), Positives = 101/157 (64%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIAN 357
GIQE +H+IL+NLK++++K+ + + I GP VTA +I L ++ I + HIA
Sbjct: 81 GIQESIHDILLNLKQVIIKNKICEFQKCLISIIGPKKVTAADIELSQNITISNPYHHIAT 140
Query: 356 VTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEI 177
+T+PI+ + L I + RGY I + QDG + +DA+F PVRN N SIH N E+QE
Sbjct: 141 ITKPIRFQVELIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNFSIH---NLAEQQEA 197
Query: 176 LFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 66
L LEIWTNG++TP +AL + S NLI LF+P E++
Sbjct: 198 LILEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDD 234
[210][TOP]
>UniRef100_Q5EFY5 RNA polymerase alpha subunit (Fragment) n=1 Tax=Andreaea rupestris
RepID=Q5EFY5_9BRYO
Length = 195
Score = 133 bits (335), Expect = 7e-30
Identities = 68/118 (57%), Positives = 87/118 (73%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+GIQE VH+IL+N KEIVLKSN Y + A I GP +TAQ+IILPPSV I+D TQ+I
Sbjct: 77 ILGIQESVHDILINSKEIVLKSNSYETQKAFISILGPKKITAQDIILPPSVKIIDTTQYI 136
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNE 189
A +T+ I L I +IE+D GYRI K DG + +DA+FMP+RNAN+SIHS+ N N+
Sbjct: 137 ATLTKAIHLDIESEIEKDCGYRIQDSKKSTDGLFFVDAVFMPIRNANYSIHSFENKNK 194
[211][TOP]
>UniRef100_Q2JUJ5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOA_SYNJA
Length = 331
Score = 113 bits (283), Expect = 8e-24
Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ G++E V EIL+N+KE+VL+SN + + +GPG VTA+ + LP V +++ HI
Sbjct: 86 VPGVREDVMEILLNMKELVLRSNAPDTQVGRLVAQGPGEVTAEKLQLPSEVEVINPRHHI 145
Query: 362 ANVTEPIQLCIGLQIERDRGYR---INTLKNFQDGSYNIDAIFMPVRNANHSIH-SYVNG 195
A + E L + I R RGYR + K+ ID++FMPVR N+++ + V
Sbjct: 146 ATLAEGAILEMEFMIGRGRGYRAVDYSDSKSMAIDFLQIDSVFMPVRKVNYTVEAARVGQ 205
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
+ +++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 206 SLEKDRLILEIWTNGSLTPQEALSQAARILVGLFSP 241
[212][TOP]
>UniRef100_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum
punctulatum RepID=RPOA_STAPU
Length = 383
Score = 113 bits (283), Expect = 8e-24
Identities = 72/167 (43%), Positives = 97/167 (58%), Gaps = 12/167 (7%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNL--------YGIRDASICFKGPGYVTAQNIILPPSVVIV 381
G++E V EIL+NLK+IV+K + ASI +GPG VTA++I P S++ V
Sbjct: 79 GVRESVDEILLNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGVVTAEHIKFPSSILAV 138
Query: 380 DNTQHIANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYV 201
D Q IA + QLCI L I + ++ K G + IDA F PV+ AN SIHS
Sbjct: 139 DPDQSIATLLNETQLCIELFIRQGIAKQLTRTKKNHQGFF-IDANFTPVQKANFSIHSVG 197
Query: 200 NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF----IPFLHAE 72
+ Q++L LEIWTN +LTP EALY+A +L++LF P LH E
Sbjct: 198 DPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKE 244
[213][TOP]
>UniRef100_A7Q481 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q481_VITVI
Length = 150
Score = 113 bits (282), Expect = 1e-23
Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 5/135 (3%)
Frame = -2
Query: 503 NLKEIVLKSNLYG-IRDASICFKGPGYVTAQNIILPPSVVIVDNTQH----IANVTEPIQ 339
N K + + S+ G + D + K GY + L + ++ N + IA + +PI
Sbjct: 14 NNKMLFVTSSFVGWLIDHILFMKWSGYDKILLLDLMYLLDLISNNNYSTILIARLKKPID 73
Query: 338 LCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIW 159
LCIGLQI+R+ Y + NFQDGSY ID +FM V+NANH+IH Y N NE+QEILFL++W
Sbjct: 74 LCIGLQIKRNCKYSMKRPNNFQDGSYPIDTVFMSVQNANHNIHFYGNVNERQEILFLKLW 133
Query: 158 TNGSLTPKEALYEAS 114
TN +LTPKEA +EAS
Sbjct: 134 TNKNLTPKEAFHEAS 148
[214][TOP]
>UniRef100_P48118 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanophora
paradoxa RepID=RPOA_CYAPA
Length = 315
Score = 112 bits (281), Expect = 1e-23
Identities = 68/170 (40%), Positives = 102/170 (60%), Gaps = 3/170 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V E+L+NLK IVLKS + + +G VT N LP V I+ TQ++
Sbjct: 68 IPGVKEDVLELLLNLKNIVLKSYTNEPQIGRLKIQGACKVTTANFELPSEVEIIHGTQYV 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDG--SYNIDAIFMPVRNANHSIHS-YVNGN 192
A V E L + +IE+ RGY+I K ++ IDAIFMPVR N+ + ++ +
Sbjct: 128 ATVAENAILEMEFKIEKGRGYKIIDKKQTENSIDFLPIDAIFMPVRKVNYMVEEIFLRNS 187
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
E +E L LEIW NGS+TP++++ +A+ L++LF PF +K+NFEN +
Sbjct: 188 EIKERLILEIWRNGSVTPQDSISQAAEVLLNLFNPF-----KKINFENTD 232
[215][TOP]
>UniRef100_A0YJS0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Lyngbya sp. PCC
8106 RepID=A0YJS0_9CYAN
Length = 314
Score = 112 bits (279), Expect = 2e-23
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V EIL+NLKEIVL S + + +GP VTA + LP V +VD Q+I
Sbjct: 68 IPGVREDVLEILLNLKEIVLNSYSNQRQIGRLLVQGPATVTAGHFDLPSEVEVVDKNQYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIFMPVRNANHSIH-SYVNG 195
A ++ L + Q+E+ GYR N + IDA+FMPVR N+++ + V G
Sbjct: 128 ATLSPGSTLEMEFQVEKGTGYRAIDRNRDEATAVDFLQIDAVFMPVRKVNYTVEDARVGG 187
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
+ +++ L L+IWTNGSLTP+EAL +A+ L+DLF+P E + + +
Sbjct: 188 SLEKDRLILDIWTNGSLTPQEALSQAATILVDLFVPLKDITLESIKTDQTD 238
[216][TOP]
>UniRef100_Q33616 Orf protein (Fragment) n=1 Tax=Musa balbisiana RepID=Q33616_MUSBA
Length = 67
Score = 111 bits (278), Expect = 3e-23
Identities = 53/67 (79%), Positives = 60/67 (89%)
Frame = -2
Query: 509 LMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIANVTEPIQLCI 330
L+NLKEIVL+SN+YG+RDASIC +GP YVTAQ+II PPSV IVD TQHIAN+TEPI LCI
Sbjct: 1 LLNLKEIVLRSNIYGVRDASICARGPKYVTAQDIISPPSVEIVDTTQHIANLTEPIDLCI 60
Query: 329 GLQIERD 309
GLQI RD
Sbjct: 61 GLQIRRD 67
[217][TOP]
>UniRef100_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella
uncinata RepID=Q2WGF4_SELUN
Length = 245
Score = 111 bits (278), Expect = 3e-23
Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E VHE MNLKEI L ++ ++A I GPG V A++ + P S+ I+ QH
Sbjct: 76 IAGVRESVHETSMNLKEIALTAHPSAAQEAHIPIVGPGKVAARDTVPPSSIGIIYPAQHA 135
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYV--NGNE 189
A VT I+ G ++E GYR + +Q GS DA+ MP+RNAN+SIH +G
Sbjct: 136 ATVTRKIRSSTGSRVEGGCGYRRRNMVEYQKGSPPPDAVSMPIRNANYSIHRLESHSGGI 195
Query: 188 KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
+E+ E T+GS TP EA YEASR+ +LF P
Sbjct: 196 MKEMPPPEARTDGSPTPGEATYEASRDSANLFSP 229
[218][TOP]
>UniRef100_P49465 DNA-directed RNA polymerase subunit alpha n=1 Tax=Odontella
sinensis RepID=RPOA_ODOSI
Length = 312
Score = 111 bits (277), Expect = 4e-23
Identities = 73/170 (42%), Positives = 95/170 (55%), Gaps = 3/170 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E + EIL+NLK IVLKS ++ + KGP VTA I LP V IV+ +I
Sbjct: 68 IPGIREDILEILLNLKGIVLKSKTNDLKFGRLKIKGPAVVTANCIQLPSEVEIVNPNHYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFMPVRNANHSIHS-YVNGN 192
A +T L I +IE GY++ T IDAIFMPV+ + I + Y N N
Sbjct: 128 ATITTSNVLEIEFKIESGTGYKLAGQTFCKKSQDYLQIDAIFMPVQKVDFKIENIYDNSN 187
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
+ E LFL+IWTNGS++P+EA+ ASR +I F L E KL E E
Sbjct: 188 DLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLL---ENKLPQETKE 234
[219][TOP]
>UniRef100_B0JY38 RNA polymerase alpha subunit n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JY38_MICAN
Length = 313
Score = 108 bits (271), Expect = 2e-22
Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ G++E V E+++N+KEI+LKS + + GP V A LP V IVD Q++
Sbjct: 68 VQGVREDVMELMLNMKEIILKSYTNQTQIGRLVATGPATVVAAQFDLPSEVEIVDRNQYV 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSIHSY-VNG 195
A + E +L + ++E+ +GYR + S + ID+IFMPV N+S+
Sbjct: 128 ATLAEGAKLEMEFRVEKGKGYRAIDRSKDEATSLDFLQIDSIFMPVTKVNYSVEDIRSES 187
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF--LHAEEEKLNFENNE 42
+ ++ L LEIWTNGS+ PKEAL +A+ L++LF P L+A E NF++ E
Sbjct: 188 GQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLKDLNALESSSNFDDQE 240
[220][TOP]
>UniRef100_B4B3P8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7822 RepID=B4B3P8_9CHRO
Length = 314
Score = 108 bits (270), Expect = 2e-22
Identities = 64/164 (39%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V E+++N+KEI LKS + + GP VTA LP V IVD +Q++
Sbjct: 68 ISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAGQFDLPSEVEIVDPSQYV 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFMPVRNANHSIHSY-V 201
A + E +L + +IE+ +GYR ++ +D S ID++FMPV N+S+ V
Sbjct: 128 ATLAEGSKLEMEFRIEKGKGYR--AIERGKDDSTSLDFLQIDSVFMPVTKVNYSVEDVRV 185
Query: 200 NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 69
+G ++ L +EIWTNGS+ PKEAL EA+ ++DLF P E
Sbjct: 186 DGTSSKDRLTIEIWTNGSVNPKEALSEAAAIIVDLFSPLRDLNE 229
[221][TOP]
>UniRef100_B4VPM9 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Microcoleus
chthonoplastes PCC 7420 RepID=B4VPM9_9CYAN
Length = 315
Score = 108 bits (269), Expect = 3e-22
Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 4/161 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+N+KE+VLKS G + GP V + LP V VD Q+I
Sbjct: 68 IAGIREDVLEILLNMKEVVLKSYTPGPHIGRVMITGPSTVRSAQFDLPSDVEFVDPGQYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSIH-SYVNG 195
A + + +L + +IER +GYR + S + +DA+FMPV N+S+ + V+G
Sbjct: 128 ATLADGAKLEMEFRIERGKGYRSVERGRDETSSVDFLQLDAVFMPVTKVNYSVEDTRVDG 187
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE 72
+ +++ L L++WTNGS++P+EAL +A+ L+DLF P E
Sbjct: 188 SLEKDRLILDVWTNGSVSPQEALSQAANILVDLFNPLKDIE 228
[222][TOP]
>UniRef100_Q7NFF5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gloeobacter
violaceus RepID=RPOA_GLOVI
Length = 314
Score = 107 bits (268), Expect = 4e-22
Identities = 66/155 (42%), Positives = 98/155 (63%), Gaps = 5/155 (3%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIAN 357
GI+E V +IL+N+KE+VL+S I+ + +GP VTA ++ LP V +V +IA
Sbjct: 70 GIREDVLDILLNMKELVLRSYTSDIQIGRLAVQGPKRVTAADLELPTEVQVVHPRHYIAT 129
Query: 356 VTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNANHSIHSYVN-GN 192
+ E QL + QIER +GYR + +DG+ +IDAIFMPVR N ++ S + N
Sbjct: 130 LAEDGQLEMEFQIERGKGYRA-IERGSEDGAAIDYLSIDAIFMPVRKVNWTVESERSAAN 188
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
+Q+ L LEIWT+GSL+P+EAL +A++ L+D P
Sbjct: 189 VEQDRLTLEIWTSGSLSPQEALSQAAKILVDQLRP 223
[223][TOP]
>UniRef100_Q3MF97 DNA-directed RNA polymerase subunit alpha n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOA_ANAVT
Length = 315
Score = 107 bits (268), Expect = 4e-22
Identities = 60/158 (37%), Positives = 98/158 (62%), Gaps = 6/158 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ G++E V EI+M +KE++LKS + + GP +TA + LP V ++D TQ++
Sbjct: 68 VPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEVIDPTQYV 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFMPVRNANHSIHSY-V 201
A + E +L + +IER +GYR T++ ++ + ID+IFMPVR N+S+
Sbjct: 128 ATIAEGGKLEMEFRIERGKGYR--TVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRA 185
Query: 200 NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
+G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 186 DGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[224][TOP]
>UniRef100_Q8YPK3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOA_ANASP
Length = 315
Score = 107 bits (268), Expect = 4e-22
Identities = 60/158 (37%), Positives = 98/158 (62%), Gaps = 6/158 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ G++E V EI+M +KE++LKS + + GP +TA + LP V ++D TQ++
Sbjct: 68 VPGVREDVLEIIMRMKEVILKSYSSQAQIGRLLVNGPTTITASHFDLPSEVEVIDPTQYV 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFMPVRNANHSIHSY-V 201
A + E +L + +IER +GYR T++ ++ + ID+IFMPVR N+S+
Sbjct: 128 ATIAEGGKLEMEFRIERGKGYR--TVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRA 185
Query: 200 NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
+G+ ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 186 DGSIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[225][TOP]
>UniRef100_C7QS38 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Cyanothece
RepID=C7QS38_CYAP0
Length = 316
Score = 107 bits (267), Expect = 5e-22
Identities = 67/158 (42%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V EI++N+KEIVLKS + + G VTA N LP V +VD TQ++
Sbjct: 70 IPGVREDVLEIMLNMKEIVLKSYSDQAQIGRLVATSAGTVTAANFELPSEVEVVDPTQYV 129
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNANHSIHSYVNG 195
A +TE +L + +IE GY+ + DG+ IDA+FMPV N+ + + G
Sbjct: 130 ATLTEGSKLEMEFRIETGTGYK-GVERGKDDGTSLDFLEIDAVFMPVTKVNYIVED-IRG 187
Query: 194 N--EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
E Q+ L LEIWTNGS PKEAL EA+ ++DLF P
Sbjct: 188 EHGEAQDRLILEIWTNGSFNPKEALSEAAEIVVDLFSP 225
[226][TOP]
>UniRef100_A8YCU3 RpoA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCU3_MICAE
Length = 313
Score = 107 bits (266), Expect = 7e-22
Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ G++E V E+++N+KEI LKS + + GP V A LP V IVD Q++
Sbjct: 68 VEGVREDVMELMLNMKEITLKSYTNQTQIGRLVATGPATVVAAQFDLPSEVEIVDRNQYV 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSIHSY-VNG 195
A + E +L + ++E+ +GYR + S + ID+IFMPV N+S+
Sbjct: 128 ATLAEGAKLEMEFRVEKGKGYRAIDRSKEEATSLDFLQIDSIFMPVTKVNYSVEDIRSES 187
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPF--LHAEEEKLNFENNE 42
+ ++ L LEIWTNGS+ PKEAL +A+ L++LF P L+A E NF++ E
Sbjct: 188 GQARDRLLLEIWTNGSINPKEALSQAADMLVNLFNPLKDLNALESSGNFDDQE 240
[227][TOP]
>UniRef100_B5W6Q8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Arthrospira
maxima CS-328 RepID=B5W6Q8_SPIMA
Length = 314
Score = 106 bits (265), Expect = 9e-22
Identities = 64/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V EI++NLKE VLKS+ Y + + +GP VT + LP V +V+ Q+I
Sbjct: 68 IEGVREDVLEIMLNLKEAVLKSHTYQKQIGRLLVQGPATVTVGHFDLPSEVEVVNKNQYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFMPVRNANHSIHSYVN 198
A ++ L + QIE+ GYR + +D S IDAIFMPVR N+++ +
Sbjct: 128 ATLSPGATLEMECQIEKGTGYR--AVDRHRDDSAALDFLQIDAIFMPVRKVNYTVEDARD 185
Query: 197 GNE-KQEILFLEIWTNGSLTPKEALYEASRNLIDLF 93
G +++ L LEIWT+GSLTP+EA+ +A+ L+DLF
Sbjct: 186 GGSLEKDRLTLEIWTSGSLTPQEAISQAAAILVDLF 221
[228][TOP]
>UniRef100_P73297 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOA_SYNY3
Length = 314
Score = 106 bits (265), Expect = 9e-22
Identities = 61/162 (37%), Positives = 96/162 (59%), Gaps = 4/162 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I+G++E V EI++N+KE+VLKS + + GPG VTA +P V ++D Q+I
Sbjct: 68 ILGVREDVLEIMLNMKELVLKSYTDQPQIGRLTAIGPGTVTAAQFEVPSEVEVIDPNQYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSIHSY-VNG 195
A + E +L + ++ER GYR+ ++ S + ID++FMPV N+++ +G
Sbjct: 128 ATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKVNYTVEDIRADG 187
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 69
++ L L+IWTNGS+ P+EAL EAS + +LFIP E
Sbjct: 188 MSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNE 229
[229][TOP]
>UniRef100_Q2JL74 DNA-directed RNA polymerase subunit alpha n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOA_SYNJB
Length = 335
Score = 106 bits (265), Expect = 9e-22
Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ G++E V EIL+N+KE+VL+S+ + + +GPG VTA+ + LP V +++ HI
Sbjct: 88 VPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEVINPRHHI 147
Query: 362 ANVTEPIQLCIGLQIERDRGYR---INTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGN 192
A + E L + I R GYR + K ID++FMPVR N+++ + G
Sbjct: 148 ATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMAIDFLQIDSVFMPVRKVNYAVEAARVGQ 207
Query: 191 -EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
+++ L LEIWTNGSLTP+EAL +A+R L+ LF P
Sbjct: 208 FLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAP 243
[230][TOP]
>UniRef100_Q6J226 RNA polymerase alpha subunit (Fragment) n=1 Tax=Chaetoceros
gracilis RepID=Q6J226_9STRA
Length = 300
Score = 106 bits (264), Expect = 1e-21
Identities = 61/153 (39%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E + EIL+NLK +V+KS I + KGP VTA +I LPP++ I++ +I
Sbjct: 70 IPGIREDILEILLNLKGVVVKSATPDISFGRLKIKGPAVVTADSIQLPPNIEIINPNHYI 129
Query: 362 ANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFMPVRNANHSIHS-YVNGN 192
A ++ L I + ER GY++ T + + IDAIFMP++ + I + Y N N
Sbjct: 130 ATISTSNVLEIEFKFERGTGYKLAGQTFCDKSEDFLQIDAIFMPIQKVDFKIENVYDNSN 189
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLF 93
E LFL+IWTNGS++P +A+ AS+ +I+ F
Sbjct: 190 SITERLFLDIWTNGSISPDDAISYASKFIIEFF 222
[231][TOP]
>UniRef100_B1XJI4 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7002 RepID=B1XJI4_SYNP2
Length = 313
Score = 105 bits (263), Expect = 2e-21
Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 5/172 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E EI++N+KEI+LKS + + + GPG VTA LP V +VD TQ+I
Sbjct: 68 IPGVREDALEIILNMKEIILKSYTHQPQIGRLTATGPGQVTAAQFDLPSEVEVVDPTQYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNANHSIHS-YVN 198
A + + +L + +IE+ + YR +N + + IDA+FMPV N+S+ S +
Sbjct: 128 ATLADGAKLEMEFRIEKGKSYRA-VQRNRDEATALDFLQIDAVFMPVTKVNYSVDSIHSE 186
Query: 197 GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
G+ ++ L LEIWTNGS+ P+EAL +A+ ++LF P E + E E
Sbjct: 187 GDAVRDRLTLEIWTNGSIKPEEALSQAAAIAVELFNPLKDLTLEAIQDELQE 238
[232][TOP]
>UniRef100_Q6B8X4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Gracilaria
tenuistipitata var. liui RepID=RPOA_GRATL
Length = 314
Score = 105 bits (262), Expect = 2e-21
Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V EIL+NLK++VLKS+ + I +GP +T +PP ++I+D Q+I
Sbjct: 68 ITGVREDVLEILLNLKKVVLKSHSDTPQIGRIRLQGPAIITTGLFEVPPEILIIDPQQYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSI-HSYVNG 195
A + + +IE+ GY++ K F S + IDA+FMPV N+++ ++
Sbjct: 128 ATICNNTIFEMEFRIEKGSGYKL-VNKGFDKKSIDFLQIDAVFMPVTKFNYTVEEKKISP 186
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHK 36
QE LFLE+WTNGSL+P+EA+ E ++ L LF P + + N +NE++
Sbjct: 187 ILIQEKLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLTNLNFQNANNTDNEYE 239
[233][TOP]
>UniRef100_B7KI11 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Cyanothece sp.
PCC 7424 RepID=B7KI11_CYAP7
Length = 314
Score = 105 bits (261), Expect = 3e-21
Identities = 59/164 (35%), Positives = 97/164 (59%), Gaps = 6/164 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V E+++N+KEI LKS + + GP VTA +P + +VD +Q++
Sbjct: 68 ISGVREDVMELILNMKEITLKSYTSQPQIGRLVATGPATVTAAQFDVPSEIEVVDPSQYV 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFMPVRNANHSIHSY-V 201
A +++ +L + ++E+ +GYR ++ +D + ID++FMPV N+S+ V
Sbjct: 128 ATLSDGSKLEMEFRVEKGKGYR--AIERGKDDTTSLDFLQIDSVFMPVTKVNYSVEDVRV 185
Query: 200 NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE 69
+G ++ L LEIWTNGS+ PKEAL EA+ ++DLF P E
Sbjct: 186 DGTGSKDRLTLEIWTNGSINPKEALSEAAAIIVDLFSPLKDLNE 229
[234][TOP]
>UniRef100_B9YIU5 DNA-directed RNA polymerase, alpha subunit n=1 Tax='Nostoc azollae'
0708 RepID=B9YIU5_ANAAZ
Length = 314
Score = 105 bits (261), Expect = 3e-21
Identities = 58/155 (37%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ G++E V EILM +KE++LK+ + + GP VTA + LP V ++D TQ++
Sbjct: 68 VPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVNGPVTVTAAHFDLPSEVEVIDPTQYV 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSIHSYVNGN 192
A + + +L + +IER +GYR + S + ID++FMPVR N+S+
Sbjct: 128 ATIADGGKLEMEFRIERGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYSVEEARGDG 187
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 188 SLKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 222
[235][TOP]
>UniRef100_A2CI44 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorokybus
atmophyticus RepID=RPOA_CHLAT
Length = 318
Score = 105 bits (261), Expect = 3e-21
Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V +IL+NLKEIVLK+ + + +GP V A+++ LP S+ +VD Q+I
Sbjct: 73 IHGVREAVLDILLNLKEIVLKTQSQETQRGHLSVQGPSTVLARDLQLPSSIELVDPDQYI 132
Query: 362 ANVTEPIQLCIGLQIERDRGYRI---NTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGN 192
A ++ + L + +E +GY++ K FQ IDA+FMPV N+++ G+
Sbjct: 133 ATISGRVSLNMEFTVEVGKGYQLPDYEKKKTFQVDVLPIDAVFMPVTKVNYTVEENYGGD 192
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
QE + +E+WTNGS+ ++A+ + +I+LF P
Sbjct: 193 RSQERVIIEVWTNGSINSRQAIDLSVNKIINLFSP 227
[236][TOP]
>UniRef100_Q9MUV0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mesostigma viride
RepID=RPOA_MESVI
Length = 316
Score = 104 bits (260), Expect = 4e-21
Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%)
Frame = -2
Query: 536 GIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIAN 357
GI+E V EIL+NLKEIV ++ ++ + +GP V A N+ LP S+ +VD Q+IA
Sbjct: 75 GIRESVLEILLNLKEIVFRTKSLDVQKGYLSIQGPCVVKAANLQLPTSIEVVDGGQYIAT 134
Query: 356 VTEPIQLCIGLQIERDRGYRINTL---KNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEK 186
++ L + I +GY++ KN S +DAIFMP+ N+ +
Sbjct: 135 LSGNANLDMEFVINTGKGYQMADYAIKKNSYISSLPVDAIFMPIHKVNYMVEQDHTSKFL 194
Query: 185 QEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENN 45
E + LEIWTNGS++P++AL + +IDLF P H E +N+
Sbjct: 195 TERVILEIWTNGSISPRDALDIGIKKVIDLFNPLHHCSSEYSTNKND 241
[237][TOP]
>UniRef100_O46914 DNA-directed RNA polymerase subunit alpha n=1 Tax=Guillardia theta
RepID=RPOA_GUITH
Length = 318
Score = 104 bits (260), Expect = 4e-21
Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKEIV L + +GP VTA++ LPP + ++D Q+I
Sbjct: 68 INGIREDVLEILLNLKEIVFSGQLQESTIGRLTVQGPAIVTARSFELPPEIKLIDPEQYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRI----NTLKNFQDGSYNIDAIFMPVRNANHSI-HSYVN 198
A + L + +IE GY+I N+ ++F+ +D++FMPV+ N I +
Sbjct: 128 ATICGNNTLEMEFKIEVGSGYKIVEKDNSTEHFE--FLQVDSVFMPVKKVNFRIEETRGE 185
Query: 197 GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE-EEKLNFENNE 42
N E L L+IWTNGS++ KEA+ A+ NLI+LF P + E + ++E NE
Sbjct: 186 NNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDGESETDYETNE 238
[238][TOP]
>UniRef100_B4WHD8 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Synechococcus
sp. PCC 7335 RepID=B4WHD8_9SYNE
Length = 315
Score = 103 bits (257), Expect = 8e-21
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V +IL+N+KE VLKS + + +GP VTA N LP V ++ ++I
Sbjct: 68 IPGVREDVLDILLNMKETVLKSYSAQPQIGRLVVQGPAKVTAANFDLPSEVELISTDRYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS---YNIDAIFMPVRNANHSIHSYVNGN 192
A+V +L + +IER +GY+ + G IDA+FMPVR N+S+ ++++
Sbjct: 128 ASVAAGHKLEMEFRIERGKGYKAIDRSREETGGVEFMQIDAVFMPVRKVNYSVENFIDPE 187
Query: 191 E-KQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
++ L +EIWTNGSLT ++A+ EA+ L+D+F P
Sbjct: 188 GFPKDRLVMEIWTNGSLTAQQAMSEAAALLVDMFNP 223
[239][TOP]
>UniRef100_Q6J224 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassionema
frauenfeldii RepID=Q6J224_9STRA
Length = 298
Score = 103 bits (257), Expect = 8e-21
Identities = 68/182 (37%), Positives = 105/182 (57%), Gaps = 6/182 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E + EIL+NLK IV+KS+ I+ + +GP +TA +I LP + IV+ +I
Sbjct: 68 IPGVREDILEILLNLKGIVIKSDTTEIKFGRLKVQGPLVLTADSIDLPSGIKIVNPNHYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSIHS-YVNG 195
A ++ I L + +IE GY++ + + F D + N ID+IFMPV+ N I + Y
Sbjct: 128 ATISTSINLELEFKIEHGIGYKLAS-QLFNDENKNFLQIDSIFMPVQKVNFKIENLYDAD 186
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE--EEKLNFENNEHKVTLPL 21
N E L LEIWTNGS+ P EAL +A + +I+ F L + +E +N K+T+
Sbjct: 187 NSISERLILEIWTNGSIEPIEALKKACKIIINCFNSLLKTQNTKETTKKTSNNRKLTIEP 246
Query: 20 FT 15
+T
Sbjct: 247 YT 248
[240][TOP]
>UniRef100_Q9TLV2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidium
caldarium RepID=RPOA_CYACA
Length = 310
Score = 103 bits (257), Expect = 8e-21
Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ G++E V EIL+NLK IVLK N+ + + +GP VT+ I P + +VD Q+I
Sbjct: 72 VKGVKEDVLEILLNLKNIVLKGNVLKNQIGRLKVQGPAIVTSGQIEFPLDITVVDPCQYI 131
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNANHSIHSYVNG 195
A ++ L + L++E+ GY++ ++ F S ID+IFMPV+ N+ + ++
Sbjct: 132 ATISGNDYLEMELKVEKSSGYKL--VETFSKKSPLDFLPIDSIFMPVKKVNYYVEEILDS 189
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
E L LE+WTNGSL+P++++ AS NL+ LF P
Sbjct: 190 KVAYEKLILELWTNGSLSPQQSINYASDNLVKLFNP 225
[241][TOP]
>UniRef100_B2ITN1 DNA-directed RNA polymerase, alpha subunit RpoA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2ITN1_NOSP7
Length = 315
Score = 103 bits (256), Expect = 1e-20
Identities = 60/158 (37%), Positives = 97/158 (61%), Gaps = 6/158 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
+ G++E V EILM +KE++LK+ + + GP +TA + LP V ++D TQ++
Sbjct: 68 VPGVREDVLEILMRMKEVILKNYSSQPQIGRLLVSGPTTITAAHFDLPSEVEVIDPTQYV 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS-----YNIDAIFMPVRNANHSI-HSYV 201
A + E +L + +IE+ +GYR T++ ++ + ID+IFMPVR N+S+ S
Sbjct: 128 ATIAEGGKLEMEFRIEKGKGYR--TVERGREEATSLDFLQIDSIFMPVRKVNYSVEESRG 185
Query: 200 NGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
G ++ L LE+WTNGS++P+EAL A+ L+DLF P
Sbjct: 186 EGLIPKDRLLLEVWTNGSISPQEALSSAAGILVDLFNP 223
[242][TOP]
>UniRef100_B0C430 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Acaryochloris
marina MBIC11017 RepID=B0C430_ACAM1
Length = 313
Score = 103 bits (256), Expect = 1e-20
Identities = 63/182 (34%), Positives = 105/182 (57%), Gaps = 8/182 (4%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V +IL+N+K++VL+S+ + + +GP VT + LP V IV+ TQ++
Sbjct: 68 IPGVREDVLDILLNMKQVVLRSHTNDPQIGRLFVQGPATVTTDDFELPTEVEIVNPTQYV 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNANHSIH-SYVN 198
A ++ L + +IE+ +GY KN + + IDAI+MPVR N+ + + V
Sbjct: 128 ATLSSDATLEMEFRIEQGKGYHA-VGKNRDEAAALDFLEIDAIYMPVRRVNYEVEDARVG 186
Query: 197 GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAE---EEKLNFENNEHKVTL 27
G +++ L L+IWTNG+LTP+E+L +A+ L+DLF P A E + E + +
Sbjct: 187 GALEKDRLILDIWTNGNLTPQESLSQAATILVDLFNPLKDATFNVVEDIELEEEDETNQI 246
Query: 26 PL 21
P+
Sbjct: 247 PI 248
[243][TOP]
>UniRef100_Q6J225 RNA polymerase alpha subunit (Fragment) n=1 Tax=Thalassiosira sp.
Cleve BA153110 RepID=Q6J225_9STRA
Length = 300
Score = 103 bits (256), Expect = 1e-20
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E + EIL+NLK IVLKS + A + GP +TA +I LPP V I++ +I
Sbjct: 70 IPGVREDILEILLNLKGIVLKSKNSTRQFARLRLHGPAVITASSIQLPPDVEIINPNHYI 129
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYNI---DAIFMPVRNANHSIHS-YVNG 195
A ++ L I +IE YR+ + F D N DAIFMP + + + + Y N
Sbjct: 130 ATLSSSHILEIEFKIESGHDYRLAN-ETFSDKLSNFIETDAIFMPDQKDDFKVENVYDNS 188
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHK 36
N +E +FL++WTNGS++P++A++ AS +IDL F E K+N E K
Sbjct: 189 NNVKERVFLDVWTNGSISPEQAIFSASNLIIDL---FKSITEHKINQEKESIK 238
[244][TOP]
>UniRef100_Q2KKK3 RNA polymerase alpha subunit (Fragment) n=1 Tax=Polytrichadelphus
purpureus RepID=Q2KKK3_9BRYO
Length = 165
Score = 102 bits (255), Expect = 1e-20
Identities = 45/61 (73%), Positives = 56/61 (91%)
Frame = -2
Query: 245 FMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEE 66
FMP+RNAN+S+HS+ N N+ QEILF+EIWTNGS+TPKEALYEASR+L DLFIPFLH E++
Sbjct: 1 FMPIRNANYSVHSFENNNKIQEILFIEIWTNGSITPKEALYEASRSLXDLFIPFLHTEKK 60
Query: 65 K 63
+
Sbjct: 61 E 61
[245][TOP]
>UniRef100_Q4C148 DNA-directed RNA polymerase n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C148_CROWT
Length = 314
Score = 101 bits (251), Expect = 4e-20
Identities = 65/158 (41%), Positives = 95/158 (60%), Gaps = 6/158 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V EI++N+KEIVLKS + + G +VTA LP V +V+ TQ I
Sbjct: 68 IPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFELPSEVEVVNPTQPI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNANHSIHSYVNG 195
A +TE +L + +IE+ GY + ++ ++ + IDA+FMPV N+S+ S + G
Sbjct: 128 ATLTEGAKLEMEFRIEKGVGY-VPVERSSEEPAALDFLQIDAVFMPVTKVNYSVES-IRG 185
Query: 194 --NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
E ++ L LEIWTNGS PKEAL +A+ L+DLF P
Sbjct: 186 EEGEAKDRLMLEIWTNGSFNPKEALSKAADILVDLFNP 223
[246][TOP]
>UniRef100_Q6J223 RNA polymerase alpha subunit (Fragment) n=1 Tax=Cylindrotheca
fusiformis RepID=Q6J223_CYLFU
Length = 291
Score = 101 bits (251), Expect = 4e-20
Identities = 69/175 (39%), Positives = 98/175 (56%), Gaps = 4/175 (2%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E + EIL+NLK IVLKS + + +GP VTA I LP + IV+ ++
Sbjct: 60 IPGVREDILEILLNLKGIVLKSKTQTAQFGRLKIQGPTVVTADLIQLPSDLEIVNPNHYL 119
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSIHS-YVNG 195
++ L I + E GY++ T + F D S N +D IFMPV+ N I + Y N
Sbjct: 120 MTISTSNVLEIEFKFEYGTGYKL-TSQAFLDESDNYLQLDTIFMPVQKVNFKIENVYDNN 178
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVT 30
N E +FL+IWTNGS++P EAL A++ IDLF L +E K E N+ + T
Sbjct: 179 NNITEQVFLDIWTNGSISPNEALKSAAQITIDLFELLLKNKETK---EKNKLEAT 230
[247][TOP]
>UniRef100_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=1 Tax=Thalassiosira
pseudonana RepID=RPOA_THAPS
Length = 313
Score = 100 bits (249), Expect = 7e-20
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 6/174 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E + EIL+NLK IVLKS + + +GP +TA +I LPP + I++ +I
Sbjct: 70 IPGVREDILEILLNLKGIVLKSKTPNRQFGRLRLQGPAVITASSIQLPPEIEIINPNHYI 129
Query: 362 ANVTEPIQLCIGLQIERDRGYRI-NTL--KNFQDGSYNIDAIFMPVRNANHSIHS-YVNG 195
A ++ L I +IE YR+ N L F+D DAIFMPV+ + + + Y N
Sbjct: 130 ATISSSHILEIEFKIESGSKYRLANELFSDKFED-FIETDAIFMPVQKVDFKVENVYDNS 188
Query: 194 NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLF--IPFLHAEEEKLNFENNEH 39
N +E L ++IWTNGS++P++A++ S +I+LF I +EK N + H
Sbjct: 189 NNIKERLLIDIWTNGSISPEQAIFSGSNLIINLFKSIGEQKINKEKENIKEKNH 242
[248][TOP]
>UniRef100_A3IQ28 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanothece sp.
CCY0110 RepID=A3IQ28_9CHRO
Length = 314
Score = 99.8 bits (247), Expect = 1e-19
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V EI++N+KEIVLKS + + G +VTA LP V +++ TQ I
Sbjct: 68 IPGVREDVLEIMLNMKEIVLKSYTEQPQIGRLVATGAAHVTAGQFDLPSEVEVINPTQPI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGS----YNIDAIFMPVRNANHSIHSYVNG 195
A +TE +L + +IE+ GY + ++ + + IDA+FMPV N+S+ S + G
Sbjct: 128 ATLTEGAKLEMEFRIEKGVGY-VPVERSSDEPTALDFLQIDAVFMPVTKVNYSVES-IRG 185
Query: 194 --NEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
E ++ L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 186 EEGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[249][TOP]
>UniRef100_B1WQT5 RNA polymerase alpha subunit n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQT5_CYAA5
Length = 314
Score = 99.4 bits (246), Expect = 1e-19
Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 5/157 (3%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I G++E V EI++N+KEIVLKS + + G +VTA LP V +++ TQ I
Sbjct: 68 IPGVREDVLEIMLNMKEIVLKSYTDQPQIGRLVATGAAHVTAGQFDLPSEVEVINPTQPI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRINTLKNFQDGSYN---IDAIFMPVRNANHSIHSYVNGN 192
A +TE +L + +IE+ GY + + + + IDA+FMPV N+S+ S + G
Sbjct: 128 ATLTEGAKLEMEFRIEKGVGYVPVERSSDEPTALDFLQIDAVFMPVTKVNYSVES-IRGE 186
Query: 191 EKQ--EILFLEIWTNGSLTPKEALYEASRNLIDLFIP 87
E + + L LEIWTNGS PKEAL A+ L+DLF P
Sbjct: 187 EGEAKDRLMLEIWTNGSFNPKEALSRAADILVDLFNP 223
[250][TOP]
>UniRef100_A6MW22 DNA-directed RNA polymerase subunit alpha n=1 Tax=Rhodomonas salina
RepID=RPOA_RHDSA
Length = 314
Score = 99.4 bits (246), Expect = 1e-19
Identities = 61/170 (35%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Frame = -2
Query: 542 IVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHI 363
I GI+E V EIL+NLKE+VLKS + +GP VT N+ LP V ++D Q+I
Sbjct: 68 IPGIREDVLEILLNLKEVVLKSQTKNPSVGRLRVQGPAIVTTSNLELPSEVELIDPNQYI 127
Query: 362 ANVTEPIQLCIGLQIERDRGYRI--NTLKNFQDGSYNIDAIFMPVRNANHSIHSY-VNGN 192
A + L + +IE +GY + ++ +DAIFMPV+ N+ N N
Sbjct: 128 ATICGNNILEMEFRIETGKGYHLIERSIDETSIDFLQVDAIFMPVKKVNYLTKDIRSNDN 187
Query: 191 EKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNE 42
QE L LE+WTNGS+ P++A+ + + L +L P +++NF+++E
Sbjct: 188 LLQEQLLLEVWTNGSIDPQDAVSQGGKILTELLHPL-----KEINFKSDE 232