[UP]
[1][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 362 bits (930), Expect = 1e-98
Identities = 179/203 (88%), Positives = 192/203 (94%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
SY R P++KIRE+KDD A+FELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLND
Sbjct: 5 SYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 64
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLR KCMTDETLDVTSKD
Sbjct: 65 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKD 124
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
L SSDHTVVPVDFS + DSA KGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT
Sbjct: 125 LISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 184
Query: 542 VSFMYEPEIHINDDLMETLTLKE 610
V+FMYEPEIHIN+DLME+LTL+E
Sbjct: 185 VTFMYEPEIHINEDLMESLTLEE 207
[2][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 361 bits (927), Expect = 2e-98
Identities = 178/203 (87%), Positives = 192/203 (94%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
SY R P++KIRE+KDD A+FELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLND
Sbjct: 5 SYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 64
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
EFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCEFCSVEFHLR KCMTDETLDVTSKD
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKD 124
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
L SSDHTVVPVDFS + DSA KGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT
Sbjct: 125 LISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 184
Query: 542 VSFMYEPEIHINDDLMETLTLKE 610
V+FMYEPEIHIN+DLME+LTL+E
Sbjct: 185 VTFMYEPEIHINEDLMESLTLEE 207
[3][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 357 bits (916), Expect = 4e-97
Identities = 173/203 (85%), Positives = 192/203 (94%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
SY R PR+KIRELKDD +FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLND
Sbjct: 5 SYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 64
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
EFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQC++CSVEFHLR KC+TD+TLDVTSKD
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKD 124
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
LYSSDHTVVPVDFS + DS+ +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT
Sbjct: 125 LYSSDHTVVPVDFSDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 184
Query: 542 VSFMYEPEIHINDDLMETLTLKE 610
V+FMYEP+IHIN+DLME+L+L+E
Sbjct: 185 VTFMYEPDIHINEDLMESLSLEE 207
[4][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 353 bits (906), Expect = 6e-96
Identities = 175/203 (86%), Positives = 190/203 (93%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
SYARMPRVKIRELKDD +FELRDTDAS+ANALRRVMISEVPT+AIDLVEIEVNSSVLND
Sbjct: 5 SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 64
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCE+CSVEFHLRVKC+TD+TLDV+SKD
Sbjct: 65 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKD 124
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
L SSDHTV PVD +S + +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT
Sbjct: 125 LISSDHTVTPVDVPGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 184
Query: 542 VSFMYEPEIHINDDLMETLTLKE 610
V+FMYEP+IHIN+DLME+LTL+E
Sbjct: 185 VTFMYEPDIHINEDLMESLTLEE 207
[5][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 348 bits (894), Expect = 2e-94
Identities = 173/208 (83%), Positives = 191/208 (91%), Gaps = 5/208 (2%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
SY R P++KIRE+KDD +FELR+TDAS+ANALRRVMI+EVPTIAIDLVEIEVNSSVLND
Sbjct: 5 SYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
EFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEFHLR KC+TD+TLDVTSKD
Sbjct: 65 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDVTSKD 124
Query: 362 LYSSDHTVVPVDFS-PDTSSD----SAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 526
LYSSDH V+PVDFS P ++D + +GIIIVKLRRGQELRLRAIARKGIGKDHAKW
Sbjct: 125 LYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 184
Query: 527 SPAATVSFMYEPEIHINDDLMETLTLKE 610
SPAATV+FMYEPEIHIN+DLMETLTL+E
Sbjct: 185 SPAATVTFMYEPEIHINEDLMETLTLEE 212
[6][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 335 bits (859), Expect = 2e-90
Identities = 166/204 (81%), Positives = 190/204 (93%), Gaps = 1/204 (0%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
+Y R P++KIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AIDLVEIEVNSSVLND
Sbjct: 5 TYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
EFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCEFCSVEF L KC+TD+TLDVTS+D
Sbjct: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124
Query: 362 LYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
LYS+D TV PVDF+ D+S SDS+ +KGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAA
Sbjct: 125 LYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAA 184
Query: 539 TVSFMYEPEIHINDDLMETLTLKE 610
TV+FMYEP+I IN+D+M+TL+ +E
Sbjct: 185 TVTFMYEPDIIINEDMMDTLSDEE 208
[7][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 332 bits (851), Expect = 1e-89
Identities = 165/204 (80%), Positives = 189/204 (92%), Gaps = 1/204 (0%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
+Y R P++KIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AIDLVEIEVNSSVLND
Sbjct: 5 TYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLND 64
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
EFIAHRLGLI LTSERAM+MRFSRDCDACDGDGQCEFCSVEF L KC+TD+TLDVTS+D
Sbjct: 65 EFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124
Query: 362 LYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
LYS+D TV PVDF+ D+S SDS+ +KGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAA
Sbjct: 125 LYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAA 184
Query: 539 TVSFMYEPEIHINDDLMETLTLKE 610
TV+FMYEP+I IN+D+M+TL+ +E
Sbjct: 185 TVTFMYEPDIIINEDMMDTLSDEE 208
[8][TOP]
>UniRef100_Q45NH1 DNA-directed RNA polymerase II third largest subunit (Fragment) n=1
Tax=Medicago sativa RepID=Q45NH1_MEDSA
Length = 184
Score = 322 bits (825), Expect = 2e-86
Identities = 161/184 (87%), Positives = 171/184 (92%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YARMPRVKIRELKDD +FELRDTDAS+ANALRRVMISEVPTIAIDLVEIEVNSSVLNDE
Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60
Query: 185 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL 364
FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCE+CSVEFHLRVKC+TD+TLDV+SKDL
Sbjct: 61 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDL 120
Query: 365 YSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 544
SSDHTV PVD +S + +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV
Sbjct: 121 ISSDHTVTPVDVPGGDASVESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 180
Query: 545 SFMY 556
+FMY
Sbjct: 181 TFMY 184
[9][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 308 bits (790), Expect = 2e-82
Identities = 160/215 (74%), Positives = 180/215 (83%), Gaps = 12/215 (5%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
SY R PRV+IRELKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLND
Sbjct: 9 SYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 68
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCM-TDETLDVTSK 358
EFIAHRLGLIPLTS AMAMRFSRDCDACDGDG CE+CSVEFHL + +D+TL+VTS
Sbjct: 69 EFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSN 128
Query: 359 DLYSSDHTVVPVD-----------FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGI 505
DL S+D V PVD P ++ +A +GI+IVKLRRGQELRLRAIARKGI
Sbjct: 129 DLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARKGI 188
Query: 506 GKDHAKWSPAATVSFMYEPEIHINDDLMETLTLKE 610
GKDHAKWSPAATV+FMYEPEI IN++LMETLTL+E
Sbjct: 189 GKDHAKWSPAATVTFMYEPEIRINEELMETLTLEE 223
[10][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 308 bits (790), Expect = 2e-82
Identities = 151/207 (72%), Positives = 179/207 (86%), Gaps = 4/207 (1%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
SY R P V+IR++KDD+ +FELRDTDASIANALRR+MI+EVPT+AIDLVEIE NSSVLND
Sbjct: 5 SYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSSVLND 64
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
EF+AHRLGLIP+ S+RAM MR SRDCDACDGDG+CE+CS+EFHL VKC D+TLDVTS D
Sbjct: 65 EFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDVTSLD 124
Query: 362 LYSSDHTVVPVDFSPDTSS----DSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 529
L SSD +++PVD + + +S +GI+IVKLR+GQEL+LRAIARKGIGKDHAKWS
Sbjct: 125 LVSSDPSIIPVDAAGRAADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIGKDHAKWS 184
Query: 530 PAATVSFMYEPEIHINDDLMETLTLKE 610
PAATV+F YEPEIHIN+ LMETLTL+E
Sbjct: 185 PAATVTFQYEPEIHINEALMETLTLEE 211
[11][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 305 bits (781), Expect = 2e-81
Identities = 159/215 (73%), Positives = 178/215 (82%), Gaps = 12/215 (5%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
SY R PRV+IRELKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLND
Sbjct: 8 SYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 67
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCM-TDETLDVTSK 358
EFIAHRLGLIPLTS AM MRFSRDCDACDGDG CE+CSVEFHL V +D+TL+VTS
Sbjct: 68 EFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVTSN 127
Query: 359 DLYSSDHTVVPVD-----------FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGI 505
DL S D V PVD P ++ S N+GI+IVKLRRGQELRLRAIARKGI
Sbjct: 128 DLRSMDPKVCPVDQARAYQHALGGTDPFGANASNENRGILIVKLRRGQELRLRAIARKGI 187
Query: 506 GKDHAKWSPAATVSFMYEPEIHINDDLMETLTLKE 610
GKDHAKWSPAATV+FMYEP+I IN++LMETLT++E
Sbjct: 188 GKDHAKWSPAATVTFMYEPDIRINEELMETLTVEE 222
[12][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 304 bits (778), Expect = 4e-81
Identities = 157/215 (73%), Positives = 178/215 (82%), Gaps = 12/215 (5%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
SY R PRV+IR+LKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLND
Sbjct: 8 SYQRFPRVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 67
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCM-TDETLDVTSK 358
EFIAHRLGLIPLTS AM MRFSRDCDACDGDG CE+CSVEFHL + +D+TL+VTS
Sbjct: 68 EFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSN 127
Query: 359 DLYSSDHTVVPVD-----------FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGI 505
DL S D V PVD P ++ S N+GI+IVKLRRGQELRLRAIARKGI
Sbjct: 128 DLRSMDPKVCPVDQARAYQQALGGTDPFGANTSNENRGILIVKLRRGQELRLRAIARKGI 187
Query: 506 GKDHAKWSPAATVSFMYEPEIHINDDLMETLTLKE 610
GKDHAKWSPAATV+FMYEP+I IN++LMETLT++E
Sbjct: 188 GKDHAKWSPAATVTFMYEPDIRINEELMETLTVEE 222
[13][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
RepID=A8MR04_ARATH
Length = 235
Score = 303 bits (776), Expect = 7e-81
Identities = 151/204 (74%), Positives = 180/204 (88%), Gaps = 1/204 (0%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
+Y R P VKIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSSVLND
Sbjct: 5 TYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLND 64
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
EFIA RL LIPLTSERAM+MRF +DC+ C+GD CEFCSVEF L KC+TD+TLDVTS+D
Sbjct: 65 EFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRD 124
Query: 362 LYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
LYS+D TV PVDF+ ++S SDS+ +KGIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAA
Sbjct: 125 LYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAA 184
Query: 539 TVSFMYEPEIHINDDLMETLTLKE 610
TV++MYEP+I IN+++M TLT +E
Sbjct: 185 TVTYMYEPDIIINEEMMNTLTDEE 208
[14][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 303 bits (776), Expect = 7e-81
Identities = 151/204 (74%), Positives = 180/204 (88%), Gaps = 1/204 (0%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
+Y R P VKIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSSVLND
Sbjct: 5 TYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLND 64
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
EFIA RL LIPLTSERAM+MRF +DC+ C+GD CEFCSVEF L KC+TD+TLDVTS+D
Sbjct: 65 EFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRD 124
Query: 362 LYSSDHTVVPVDFSPDTS-SDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
LYS+D TV PVDF+ ++S SDS+ +KGIII KLRRGQEL+L+A+ARKGIGKDHAKWSPAA
Sbjct: 125 LYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAA 184
Query: 539 TVSFMYEPEIHINDDLMETLTLKE 610
TV++MYEP+I IN+++M TLT +E
Sbjct: 185 TVTYMYEPDIIINEEMMNTLTDEE 208
[15][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 220 bits (561), Expect = 6e-56
Identities = 117/206 (56%), Positives = 145/206 (70%), Gaps = 3/206 (1%)
Frame = +2
Query: 2 SYARMPRVKIRELKD--DMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 175
SY R+P V I E ++ RF+L +TD S+AN+LRR M+ EVPT+A DLVEIE+NSSVL
Sbjct: 19 SYHRLPTVSIMESMSSRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSSVL 78
Query: 176 NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTS 355
DEFIAHRLGLIPLTS+RAM M F +CD+C GD C+ C+VEF L VK D DVT
Sbjct: 79 TDEFIAHRLGLIPLTSDRAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIKDVTQ 138
Query: 356 KDLYSSDHTVVPVDFSPDTSSD-SAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
+DL SS+ VVPV+ D I I KL +GQE+ LRA+A+KG+G HAKWSP
Sbjct: 139 RDLKSSNDAVVPVEIDVDKQGVLEECKMDICIAKLYKGQEITLRALAKKGMGSLHAKWSP 198
Query: 533 AATVSFMYEPEIHINDDLMETLTLKE 610
ATV+F +EPEI+IN++ ME LTL E
Sbjct: 199 VATVTFHHEPEIYINEEKMEALTLAE 224
[16][TOP]
>UniRef100_UPI0000E4A699 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E4A699
Length = 275
Score = 201 bits (511), Expect = 4e-50
Identities = 103/188 (54%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P +++ EL DD +F + DTD S+AN++RR +++EVPTIAID VEI+ NSSVL+DE
Sbjct: 3 YANQPTIQLTELTDDNVKFIIEDTDLSVANSIRRTILAEVPTIAIDWVEIQANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FI+HR+GLIPLTS+ + + F+RDC + C CSVE L VKC D+T VTS+D
Sbjct: 63 FISHRVGLIPLTSDEVVDKLNFNRDCGC---EEFCSDCSVELSLDVKCTDDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
L SS+ VVPV SSD I+IVKLR+GQELRLRA A+KG GKDHAKW P A
Sbjct: 120 LLSSNQKVVPVPSRNQESSDYGEVDDILIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAA 179
Query: 542 VSFMYEPE 565
++F Y+P+
Sbjct: 180 IAFEYDPD 187
[17][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 197 bits (501), Expect = 6e-49
Identities = 106/197 (53%), Positives = 139/197 (70%)
Frame = +2
Query: 11 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 190
R P ++I E+K+D F L +TD S+ANALRRVMI+EVPT+ IDLVE E N+SVL DEFI
Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69
Query: 191 AHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYS 370
AHRLGLIPL S+ ++RDC D +C+ CSVE L VKC + DVTS DL S
Sbjct: 70 AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 126
Query: 371 SDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSF 550
+ V+PV S TSS+S + I IVKLRRGQE++LRAIA+KG+GK+HAKWSP+ ++
Sbjct: 127 QNSAVIPVS-SQVTSSNS--EQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATY 183
Query: 551 MYEPEIHINDDLMETLT 601
++P I +N + ++ LT
Sbjct: 184 QFQPIIVLNQNRIDELT 200
[18][TOP]
>UniRef100_C1BV58 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Lepeophtheirus
salmonis RepID=C1BV58_9MAXI
Length = 279
Score = 194 bits (494), Expect = 4e-48
Identities = 103/191 (53%), Positives = 135/191 (70%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P + I EL +D+ +F L DTD S+ANA+RRVMI+E P +AID V++E NS+VL+DE
Sbjct: 3 YANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLG+IPLTS+ A+ +M++SRDC D C C+VEF L VKC + T +VTS D
Sbjct: 63 FIAHRLGMIPLTSDDAVDSMQYSRDCTCTD---FCRECAVEFTLDVKCHEETTRNVTSAD 119
Query: 362 LYSSDHTVVPV---DFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
L SSD V+PV + D N I+IVKLR+GQEL++RA A+KG K+HAKW+P
Sbjct: 120 LKSSDPKVIPVTSRNQEEDGHEYGNENDDILIVKLRKGQELKVRAYAKKGFAKEHAKWNP 179
Query: 533 AATVSFMYEPE 565
A VSF Y+P+
Sbjct: 180 TAGVSFEYDPD 190
[19][TOP]
>UniRef100_UPI00019253CC PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI00019253CC
Length = 273
Score = 192 bits (489), Expect = 1e-47
Identities = 105/189 (55%), Positives = 132/189 (69%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA PRVKI E DD +F L +TD S+AN+LRR+ I+EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 185 FIAHRLGLIPLTS-ERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIPLTS E+ M +SRDC + C+ CSV+F L VKC + T VTS+D
Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRD 119
Query: 362 LYSSDHTVVPVDFS-PDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
L S D V+PV D + I+IVKLR+GQEL+L A A+KG GK+HAKW+P A
Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDEIVIVKLRKGQELKLHAFAKKGFGKEHAKWNPTA 179
Query: 539 TVSFMYEPE 565
VSF Y+P+
Sbjct: 180 GVSFEYDPD 188
[20][TOP]
>UniRef100_UPI0001925380 PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI0001925380
Length = 289
Score = 192 bits (489), Expect = 1e-47
Identities = 105/189 (55%), Positives = 132/189 (69%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA PRVKI E DD +F L +TD S+AN+LRR+ I+EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 185 FIAHRLGLIPLTS-ERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIPLTS E+ M +SRDC + C+ CSV+F L VKC + T VTS+D
Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRD 119
Query: 362 LYSSDHTVVPVDFS-PDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
L S D V+PV D + I+IVKLR+GQEL+L A A+KG GK+HAKW+P A
Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDEIVIVKLRKGQELKLHAFAKKGFGKEHAKWNPTA 179
Query: 539 TVSFMYEPE 565
VSF Y+P+
Sbjct: 180 GVSFEYDPD 188
[21][TOP]
>UniRef100_UPI000001AB34 UPI000001AB34 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI000001AB34
Length = 275
Score = 192 bits (488), Expect = 2e-47
Identities = 101/190 (53%), Positives = 137/190 (72%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P VKI EL D+ +F + +TD ++AN++RRV +SEVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPLTS+ + +++SRDC D C CSVE L V+C D+T VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTC---DDFCSECSVELTLDVRCTEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S++ V+PV S D + V + I++VKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A VSF Y+P+
Sbjct: 180 AGVSFEYDPD 189
[22][TOP]
>UniRef100_Q7ZV11 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Danio
rerio RepID=Q7ZV11_DANRE
Length = 275
Score = 192 bits (488), Expect = 2e-47
Identities = 102/190 (53%), Positives = 137/190 (72%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P VKI EL D+ +F + +TD ++AN++RRV +SEVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D+T VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S++ V+PV S D + V + I++VKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[23][TOP]
>UniRef100_Q4SK90 Chromosome 13 SCAF14566, whole genome shotgun sequence. (Fragment)
n=1 Tax=Tetraodon nigroviridis RepID=Q4SK90_TETNG
Length = 275
Score = 192 bits (487), Expect = 2e-47
Identities = 101/190 (53%), Positives = 137/190 (72%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P VKI EL D+ +F + +TD ++AN++RRV +SEVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPLTS+ + +++SRDC D C CSVE L V+C D+T VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S++ V+PV S D + V + I++VKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A VSF Y+P+
Sbjct: 180 AGVSFEYDPD 189
[24][TOP]
>UniRef100_B5FZ64 Putative DNA directed RNA polymerase II polypeptide C n=1
Tax=Taeniopygia guttata RepID=B5FZ64_TAEGU
Length = 275
Score = 192 bits (487), Expect = 2e-47
Identities = 104/190 (54%), Positives = 137/190 (72%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S++ V+PV S D + V + I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[25][TOP]
>UniRef100_Q6P7Y7 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Xenopus
(Silurana) tropicalis RepID=Q6P7Y7_XENTR
Length = 275
Score = 191 bits (486), Expect = 3e-47
Identities = 104/190 (54%), Positives = 138/190 (72%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIPLTS+ + +++SRDC D C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S++ V+PV S D + V + I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[26][TOP]
>UniRef100_Q6IRR3 MGC81245 protein n=1 Tax=Xenopus laevis RepID=Q6IRR3_XENLA
Length = 275
Score = 191 bits (485), Expect = 4e-47
Identities = 103/190 (54%), Positives = 138/190 (72%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V++ EL D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIPLTS+ + +++SRDC D C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTC---DEFCPECSVEFTLDVRCTEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S++ V+PV S D + V + I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[27][TOP]
>UniRef100_C1BL52 DNA-directed RNA polymerase II 33 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BL52_OSMMO
Length = 275
Score = 191 bits (485), Expect = 4e-47
Identities = 103/190 (54%), Positives = 136/190 (71%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P VKI EL D+ +F + +TD ++AN++RRV +SEV TIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S++ V+PV S D + V + II+VKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDIILVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A VSF Y+P+
Sbjct: 180 AGVSFEYDPD 189
[28][TOP]
>UniRef100_UPI00003AA556 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
RepID=UPI00003AA556
Length = 275
Score = 191 bits (484), Expect = 5e-47
Identities = 103/190 (54%), Positives = 137/190 (72%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S++ V+PV S D + V + I+IVKLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELKLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[29][TOP]
>UniRef100_Q76L19 Homologue of DNA-directed RNA polymerase II subunit n=1
Tax=Antheraea pernyi RepID=Q76L19_ANTPE
Length = 275
Score = 190 bits (482), Expect = 9e-47
Identities = 99/190 (52%), Positives = 131/190 (68%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I EL DD +F + DT+ S+AN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + +R+SRDC D C CSVEF L VKC D+T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCAD---FCSECSVEFTLDVKCTDDQTRHVTTAD 119
Query: 362 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L SSD VVPV + +D I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGETDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V F Y+P+
Sbjct: 180 AGVCFEYDPD 189
[30][TOP]
>UniRef100_B7QL55 RNA polymerase II, subunit POLR2C/RPB3, putative n=1 Tax=Ixodes
scapularis RepID=B7QL55_IXOSC
Length = 274
Score = 190 bits (482), Expect = 9e-47
Identities = 100/189 (52%), Positives = 133/189 (70%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I EL D+ +F + DTD S+AN+LRRV I+EV T+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF + VKC+ ++T VT+ D
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCAD---FCTECSVEFTIDVKCLDEQTRHVTTAD 119
Query: 362 LYSSDHTVVPV-DFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
L SSD VVPV D +++ I+IVKLR+GQE++ RA A+KG GK+HAKW+P
Sbjct: 120 LKSSDPRVVPVTSRHKDDTNEYGETDDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTC 179
Query: 539 TVSFMYEPE 565
V+F Y+P+
Sbjct: 180 GVAFEYDPD 188
[31][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 189 bits (481), Expect = 1e-46
Identities = 110/220 (50%), Positives = 140/220 (63%), Gaps = 20/220 (9%)
Frame = +2
Query: 11 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 190
R P + ++E+ +D +F L TD SIANALRRV+I+EVPTIAIDLVE+ NSS L DEFI
Sbjct: 11 RRPNIVVQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSCLCDEFI 70
Query: 191 AHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL-- 364
AHRLGLIPL S +A M F D GD + V LRVKC++D+T DVTS DL
Sbjct: 71 AHRLGLIPLVSHKAADMEFPYD---YAGDDE-TVTDVPIELRVKCVSDQTEDVTSNDLLI 126
Query: 365 ---YSSDHTVVPVDFSP------DTSSDSAVNKG---------IIIVKLRRGQELRLRAI 490
Y+ TV PV + P D ++ A G I+I+KLR+ QE+ +R +
Sbjct: 127 NGDYTQYDTVKPVHYRPSGRAFGDATASGAPADGSQADGDKHPILILKLRKNQEINMRCV 186
Query: 491 ARKGIGKDHAKWSPAATVSFMYEPEIHINDDLMETLTLKE 610
ARKG+G+DHAKW P AT + +EPEI IN+DLM TLT +E
Sbjct: 187 ARKGVGRDHAKWQPVATAVYRFEPEITINEDLMATLTEEE 226
[32][TOP]
>UniRef100_UPI00005EAD58 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C, 33kDa n=1 Tax=Monodelphis domestica
RepID=UPI00005EAD58
Length = 275
Score = 189 bits (480), Expect = 2e-46
Identities = 101/190 (53%), Positives = 134/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + SD I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNTPRVIPVTSRSRDNDPSDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[33][TOP]
>UniRef100_C1BXW0 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Esox lucius
RepID=C1BXW0_ESOLU
Length = 275
Score = 189 bits (480), Expect = 2e-46
Identities = 100/190 (52%), Positives = 133/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P VKI EL D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDFS--PDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I++VKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A VSF Y+P+
Sbjct: 180 AGVSFEYDPD 189
[34][TOP]
>UniRef100_B5XBM8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5XBM8_SALSA
Length = 275
Score = 189 bits (480), Expect = 2e-46
Identities = 100/190 (52%), Positives = 133/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P VKI EL D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDFS--PDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I++VKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A VSF Y+P+
Sbjct: 180 AGVSFEYDPD 189
[35][TOP]
>UniRef100_C3Z918 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z918_BRAFL
Length = 275
Score = 189 bits (479), Expect = 2e-46
Identities = 98/190 (51%), Positives = 135/190 (71%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P+V + EL D+ +F + DTD S+ANA+RR+ I+EVPT+AID V++E NSSVL+DE
Sbjct: 3 YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIPLTS+ + M++SRDC + C C++E L VKC D+T VT++D
Sbjct: 63 FIAHRVGLIPLTSDDIVDRMQYSRDCTCAE---FCADCAIELTLDVKCTDDQTRHVTTRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L SS+ VVPV + D ++ I+IVKLR+GQEL+LRA A+KG K+HAKW+P
Sbjct: 120 LISSNPRVVPVTSRRAEDETAGYGEADDILIVKLRKGQELKLRAFAKKGFAKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[36][TOP]
>UniRef100_Q3T0Q3 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Bos taurus
RepID=RPB3_BOVIN
Length = 275
Score = 188 bits (478), Expect = 3e-46
Identities = 100/190 (52%), Positives = 134/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[37][TOP]
>UniRef100_Q1HQ43 DNA-directed RNA polymerase II polypeptide n=1 Tax=Bombyx mori
RepID=Q1HQ43_BOMMO
Length = 275
Score = 188 bits (477), Expect = 3e-46
Identities = 99/190 (52%), Positives = 132/190 (69%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I EL D+ +F + DT+ S+AN++RRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + +R+SRDC D C CSVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFTLDVKCTDEQTRHVTTAD 119
Query: 362 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L SSD VVPV + +D I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A VSF Y+P+
Sbjct: 180 AGVSFEYDPD 189
[38][TOP]
>UniRef100_B5X5T8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5X5T8_SALSA
Length = 275
Score = 187 bits (476), Expect = 4e-46
Identities = 99/190 (52%), Positives = 132/190 (69%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P VKI EL D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIPLTS+ + M++SRDC D C CSVE L +C D+T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDARCTEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDFS--PDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I++VKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A VSF Y+P+
Sbjct: 180 AGVSFEYDPD 189
[39][TOP]
>UniRef100_UPI000186DA34 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186DA34
Length = 275
Score = 187 bits (474), Expect = 8e-46
Identities = 98/190 (51%), Positives = 132/190 (69%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I +L D+ +F++ DT+ S+AN++RRV I+E PT+AID V++E NS+VL DE
Sbjct: 3 YANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FI+HR+GLIPLTS+ + ++++RDC D C CSVEF L VKC D T VT+ D
Sbjct: 63 FISHRVGLIPLTSDEVVDRIQYTRDCTCLD---FCPECSVEFTLDVKCTDDHTRHVTTAD 119
Query: 362 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L SSD V+PV D +S+ I+IVKLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSDPRVLPVTSRHREDDTSEYGEADEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V F Y+P+
Sbjct: 180 AGVCFEYDPD 189
[40][TOP]
>UniRef100_UPI0000DC0B4D polymerase II polypeptide C n=1 Tax=Rattus norvegicus
RepID=UPI0000DC0B4D
Length = 330
Score = 187 bits (474), Expect = 8e-46
Identities = 99/190 (52%), Positives = 134/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[41][TOP]
>UniRef100_UPI00016D3816 polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Mus
musculus RepID=UPI00016D3816
Length = 302
Score = 187 bits (474), Expect = 8e-46
Identities = 99/190 (52%), Positives = 134/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[42][TOP]
>UniRef100_Q9DB22 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q9DB22_MOUSE
Length = 275
Score = 187 bits (474), Expect = 8e-46
Identities = 99/190 (52%), Positives = 134/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[43][TOP]
>UniRef100_Q99M46 Polymerase (RNA) II (DNA directed) polypeptide C n=2 Tax=Murinae
RepID=Q99M46_MOUSE
Length = 275
Score = 187 bits (474), Expect = 8e-46
Identities = 99/190 (52%), Positives = 134/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[44][TOP]
>UniRef100_C4WTK3 ACYPI001769 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WTK3_ACYPI
Length = 273
Score = 186 bits (473), Expect = 1e-45
Identities = 98/193 (50%), Positives = 134/193 (69%), Gaps = 6/193 (3%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I EL D +F++ DTD S+AN+LRRV I+E PT+AID V+++ NS+VL+DE
Sbjct: 3 YANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIA R+GLIPLTS+ + +++SRDC D C CSVEF+L VKC + T VT+ D
Sbjct: 63 FIASRIGLIPLTSDEIVDRLQYSRDCTCSD---FCHDCSVEFNLHVKCSEEMTRHVTTAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNK-----GIIIVKLRRGQELRLRAIARKGIGKDHAKW 526
L S++ VVPV + DS +N+ I+I+KLR+GQEL++RA A+KG GK+HAKW
Sbjct: 120 LVSNNPRVVPV---TSRNQDSDINEYGEKDDILIIKLRKGQELKIRAFAKKGFGKEHAKW 176
Query: 527 SPAATVSFMYEPE 565
+P VSF Y+P+
Sbjct: 177 NPTTGVSFEYDPD 189
[45][TOP]
>UniRef100_A7SI64 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SI64_NEMVE
Length = 274
Score = 186 bits (473), Expect = 1e-45
Identities = 101/190 (53%), Positives = 129/190 (67%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P VKI EL D+ +F + T S+AN LRR+ I+E PTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGL+PLTS+ + M FSRDC D C+ CS+EF L VKC D T VT++D
Sbjct: 63 FIAHRLGLVPLTSDEVVDRMTFSRDCTC---DEFCDDCSIEFTLDVKCTDDSTRHVTTQD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S++ VPV D S + I+IVKLR+GQEL+LRA A+KG K+HAKW+P
Sbjct: 120 LISTNPRCVPVTSRNREDDSREYMEQDDILIVKLRKGQELKLRAFAKKGFAKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[46][TOP]
>UniRef100_UPI0000D9F160 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 1 n=1 Tax=Macaca mulatta RepID=UPI0000D9F160
Length = 257
Score = 186 bits (472), Expect = 1e-45
Identities = 99/190 (52%), Positives = 133/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[47][TOP]
>UniRef100_UPI0000D5785C PREDICTED: similar to DNA-directed RNA polymerase II subunit n=1
Tax=Tribolium castaneum RepID=UPI0000D5785C
Length = 274
Score = 186 bits (472), Expect = 1e-45
Identities = 96/190 (50%), Positives = 131/190 (68%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I +L DD +F + DTD S+AN++RRV+I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + +++ RDC D C CSVEF L VKC D T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVQRLQYPRDCICTD---FCHECSVEFTLDVKCTDDHTRHVTTAD 119
Query: 362 LYSSDHTVVPV--DFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L SSD V+P D SS+ I+I+KLR+GQEL+++A A+KG GK+HAKW+P
Sbjct: 120 LKSSDPRVIPATSKHRDDESSEYGDTDEILIIKLRKGQELKVKAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[48][TOP]
>UniRef100_O97183 RNA polymerase II 33kD subunit, isoform A n=1 Tax=Drosophila
melanogaster RepID=O97183_DROME
Length = 275
Score = 186 bits (472), Expect = 1e-45
Identities = 98/191 (51%), Positives = 132/191 (69%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
L SS+ V+PV D+ N I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 533 AATVSFMYEPE 565
A V F Y+P+
Sbjct: 180 TAGVCFEYDPD 190
[49][TOP]
>UniRef100_B4Q573 GD23930 n=1 Tax=Drosophila simulans RepID=B4Q573_DROSI
Length = 275
Score = 186 bits (472), Expect = 1e-45
Identities = 98/191 (51%), Positives = 132/191 (69%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
L SS+ V+PV D+ N I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 533 AATVSFMYEPE 565
A V F Y+P+
Sbjct: 180 TAGVCFEYDPD 190
[50][TOP]
>UniRef100_B4P3R0 GE18688 n=1 Tax=Drosophila yakuba RepID=B4P3R0_DROYA
Length = 275
Score = 186 bits (472), Expect = 1e-45
Identities = 98/191 (51%), Positives = 132/191 (69%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
L SS+ V+PV D+ N I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 533 AATVSFMYEPE 565
A V F Y+P+
Sbjct: 180 TAGVCFEYDPD 190
[51][TOP]
>UniRef100_B4HXA7 GM15286 n=1 Tax=Drosophila sechellia RepID=B4HXA7_DROSE
Length = 275
Score = 186 bits (472), Expect = 1e-45
Identities = 98/191 (51%), Positives = 132/191 (69%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
L SS+ V+PV D+ N I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRHQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 533 AATVSFMYEPE 565
A V F Y+P+
Sbjct: 180 TAGVCFEYDPD 190
[52][TOP]
>UniRef100_B7Z6D1 cDNA FLJ57430, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z6D1_HUMAN
Length = 424
Score = 186 bits (472), Expect = 1e-45
Identities = 99/190 (52%), Positives = 133/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[53][TOP]
>UniRef100_P19387 DNA-directed RNA polymerase II subunit RPB3 n=2 Tax=Homo sapiens
RepID=RPB3_HUMAN
Length = 275
Score = 186 bits (472), Expect = 1e-45
Identities = 99/190 (52%), Positives = 133/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[54][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 186 bits (471), Expect = 2e-45
Identities = 105/220 (47%), Positives = 137/220 (62%), Gaps = 20/220 (9%)
Frame = +2
Query: 11 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 190
R P + ++EL + RF L TD S+ANALRRV+I+EVPT+AIDLV++ N+S L DEFI
Sbjct: 10 RSPSIVVQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEFI 69
Query: 191 AHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVK-CMTDETLDVTSKDLY 367
AHRLGLIPL SE+A+ M F D GD + V F L C + ET+DVTS DL
Sbjct: 70 AHRLGLIPLLSEKAVEMEFPYD---YAGDDE-SVTDVHFELNTGICASAETVDVTSNDLV 125
Query: 368 SSDHTVVPVDFSPDTS-------------------SDSAVNKGIIIVKLRRGQELRLRAI 490
D V PV++ P S D G++IVKLRRGQ++ +R +
Sbjct: 126 CYDPRVAPVNYHPGESIKGKGGAMEFEAQAAARGPDDGPDIPGVVIVKLRRGQQINMRCV 185
Query: 491 ARKGIGKDHAKWSPAATVSFMYEPEIHINDDLMETLTLKE 610
ARKG+G+DHAKW P AT ++ +EPEI IN++LM TLT +E
Sbjct: 186 ARKGVGRDHAKWQPVATATYRFEPEITINEELMATLTEEE 225
[55][TOP]
>UniRef100_B4MVQ9 GK15011 n=1 Tax=Drosophila willistoni RepID=B4MVQ9_DROWI
Length = 275
Score = 185 bits (470), Expect = 2e-45
Identities = 98/191 (51%), Positives = 132/191 (69%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
L SS+ V+PV D+ N I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 533 AATVSFMYEPE 565
A V F Y+P+
Sbjct: 180 TAGVCFEYDPD 190
[56][TOP]
>UniRef100_UPI000051A16D PREDICTED: similar to RNA polymerase II 33kD subunit CG7885-PA,
isoform A n=1 Tax=Apis mellifera RepID=UPI000051A16D
Length = 276
Score = 185 bits (469), Expect = 3e-45
Identities = 94/190 (49%), Positives = 133/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I +L ++ +F++ DT+ S+AN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+G+IPL S+ + ++++RDC D C CSVEF L VKC D+T VT+ D
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMD---FCPECSVEFTLDVKCTEDQTRHVTTAD 119
Query: 362 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
SSD V+PV D +S+ I+IVKLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 FKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A VSF Y+P+
Sbjct: 180 AGVSFEYDPD 189
[57][TOP]
>UniRef100_Q3UUX3 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q3UUX3_MOUSE
Length = 332
Score = 185 bits (469), Expect = 3e-45
Identities = 98/190 (51%), Positives = 133/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+ Y+P+
Sbjct: 180 AXVALEYDPD 189
[58][TOP]
>UniRef100_B4JCX9 GH11119 n=3 Tax=Drosophila RepID=B4JCX9_DROGR
Length = 275
Score = 185 bits (469), Expect = 3e-45
Identities = 97/191 (50%), Positives = 132/191 (69%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKG---IIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
L SS+ V+PV D+ + I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESTDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 533 AATVSFMYEPE 565
A V F Y+P+
Sbjct: 180 TAGVCFEYDPD 190
[59][TOP]
>UniRef100_Q29K78 GA20659 n=2 Tax=pseudoobscura subgroup RepID=Q29K78_DROPS
Length = 275
Score = 184 bits (468), Expect = 4e-45
Identities = 96/191 (50%), Positives = 132/191 (69%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKG---IIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
L +S+ V+PV D+ + I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKTSNPKVLPVTSRNQGEEDNEYGESSDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 533 AATVSFMYEPE 565
A V F Y+P+
Sbjct: 180 TAGVCFEYDPD 190
[60][TOP]
>UniRef100_Q4R533 Brain cDNA, clone: QccE-21516, similar to human polymerase (RNA) II
(DNA directed) polypeptide C, 33kDa(POLR2C), transcript
variant gamma, n=1 Tax=Macaca fascicularis
RepID=Q4R533_MACFA
Length = 251
Score = 184 bits (467), Expect = 5e-45
Identities = 98/190 (51%), Positives = 132/190 (69%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L + V+PV + +D I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LIPNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[61][TOP]
>UniRef100_Q7Q2H6 AGAP010321-PA n=1 Tax=Anopheles gambiae RepID=Q7Q2H6_ANOGA
Length = 273
Score = 184 bits (467), Expect = 5e-45
Identities = 97/191 (50%), Positives = 130/191 (68%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I EL D+ +F + DT+ S+AN+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + M++SRDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLD---FCNECSVEFTLDVKCNEEHTRHVTTAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKG---IIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
L SSD V+PV D+ +G I+I+KLR+GQEL+L+A A+KG GK+HAKW+P
Sbjct: 120 LKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLKAYAKKGFGKEHAKWNP 179
Query: 533 AATVSFMYEPE 565
VSF Y+P+
Sbjct: 180 TCGVSFEYDPD 190
[62][TOP]
>UniRef100_UPI00015B59AE PREDICTED: similar to DNA-directed RNA polymerase II polypeptide
n=1 Tax=Nasonia vitripennis RepID=UPI00015B59AE
Length = 276
Score = 184 bits (466), Expect = 6e-45
Identities = 95/190 (50%), Positives = 132/190 (69%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I EL ++ +F++ DT+ S+AN++RRV I+E PT+AID V+IE NS+VL+DE
Sbjct: 3 YANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+G+IPL S+ + ++++RDC D C C VEF L VKC + T VT+ D
Sbjct: 63 FLAHRIGMIPLISDEVVDRIQYTRDCQCMD---FCPECCVEFTLDVKCSDETTRHVTTAD 119
Query: 362 LYSSDHTVVPV--DFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L SS+ VVPV D +++ I+IVKLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSEQRVVPVTSKHRDDDANEYGETDEILIVKLRKGQELKLRAYAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A VSF Y+P+
Sbjct: 180 AGVSFEYDPD 189
[63][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G229_PHATR
Length = 320
Score = 184 bits (466), Expect = 6e-45
Identities = 103/214 (48%), Positives = 137/214 (64%), Gaps = 12/214 (5%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
Y R PRV+I ++ +F L ++D S+AN LRR+MI+EVPT+AIDLVE NS+VLNDE
Sbjct: 3 YQRFPRVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDE 62
Query: 185 FIAHRLGLIPLTSERAMAMRFSRDCDA------CDGDGQCEFCSVEFHLRV--KCMTDET 340
+IAHR+GLIP+ + A +++ S DA C C CSVEF L + K +E
Sbjct: 63 YIAHRMGLIPVRYQPAESLKGSDCSDAFLPHRECVCYEHCMRCSVEFELDITYKVTGEED 122
Query: 341 ----LDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIG 508
L VTSKDL S++ V P F D A ++G+ IVKL GQ L+L+AIAR GI
Sbjct: 123 VLAPLTVTSKDLVSNNELVQPAHFLSQDEQDEAQDEGVAIVKLGPGQRLKLKAIARMGIS 182
Query: 509 KDHAKWSPAATVSFMYEPEIHINDDLMETLTLKE 610
K+HAKW P A ++ + PEIHIND+ M TLTL++
Sbjct: 183 KEHAKWCPVAVATYRFWPEIHINDEQMATLTLEQ 216
[64][TOP]
>UniRef100_Q16XU4 DNA-directed RNA polymerase II subunit n=1 Tax=Aedes aegypti
RepID=Q16XU4_AEDAE
Length = 275
Score = 183 bits (465), Expect = 8e-45
Identities = 97/191 (50%), Positives = 128/191 (67%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I EL D+ +F + DTD S+ N+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F+AHR+GLIPL S+ + M++SRDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRVGLIPLISDEVVERMQYSRDCTCLD---FCTECSVEFTLDVKCNDEHTRHVTTAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKG---IIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
L SSD V+PV D+ +G I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 533 AATVSFMYEPE 565
V F Y+P+
Sbjct: 180 TCGVCFEYDPD 190
[65][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 182 bits (463), Expect = 1e-44
Identities = 98/198 (49%), Positives = 131/198 (66%), Gaps = 5/198 (2%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
V + L+D F L+ D S+ANALRRVMI++VPT+AIDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHRL 70
Query: 203 GLIPLTSERAMAM-----RFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY 367
GLIPL+S++ + D A D V L V+C+T++ +DVTS+D+
Sbjct: 71 GLIPLSSKKVSELFKPYEYMGEDDSATD---------VHLELNVRCLTEQAMDVTSEDMV 121
Query: 368 SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVS 547
S D V P+ F T SD+A GI+IVKLR Q+L L+ IARKG GKDHAKWSP AT
Sbjct: 122 SYDERVKPITFQ-GTVSDAAKPGGILIVKLRNKQQLLLKCIARKGTGKDHAKWSPVATAV 180
Query: 548 FMYEPEIHINDDLMETLT 601
F ++P +H+N +L++TL+
Sbjct: 181 FKHDPVVHVNQELLKTLS 198
[66][TOP]
>UniRef100_B3RV95 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3RV95_TRIAD
Length = 274
Score = 182 bits (463), Expect = 1e-44
Identities = 94/190 (49%), Positives = 133/190 (70%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA PRV I +L ++ +F L +TD S+AN+LRR+ I+ VPT+AID V+ N+SVL+DE
Sbjct: 3 YASQPRVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLT + + +++SRDC+ + C CSVEF L V+C D+T VT++D
Sbjct: 63 FIAHRLGLIPLTCDEVIDRLQYSRDCNCVE---HCPECSVEFTLDVRCNDDQTRHVTTRD 119
Query: 362 LYSSDHTVVPVD--FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L SSD VVPV + D + I+I KLRRGQE++++A A+KG+G +HAKW+P
Sbjct: 120 LISSDSRVVPVTTRYGEDDTVYGDQEDDILIAKLRRGQEIKIKAYAKKGLGTEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A+V+F Y+P+
Sbjct: 180 ASVAFEYDPD 189
[67][TOP]
>UniRef100_A8PAX3 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Brugia malayi RepID=A8PAX3_BRUMA
Length = 275
Score = 182 bits (462), Expect = 2e-44
Identities = 94/190 (49%), Positives = 132/190 (69%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V I L D++ RF L DTD S+AN+LRR+ ++EVPT+AID V+IE NSSVL+DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + M+FSRDC + C+FC+VE LRV+C + VT+ D
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTE---FCQFCAVEMRLRVRCDDEGIRAVTTAD 119
Query: 362 LYSSDHTVVPV--DFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L +S+ V P + +++ + I+IVKLR+GQ++ ++ IA+KG GK+HAKW+P
Sbjct: 120 LETSNPDVAPACGVHIRNRNAEENASDDILIVKLRKGQDIDIKCIAKKGFGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
V+F Y+P+
Sbjct: 180 CCVAFEYDPD 189
[68][TOP]
>UniRef100_P97760 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Mus musculus
RepID=RPB3_MOUSE
Length = 275
Score = 180 bits (457), Expect = 7e-44
Identities = 97/190 (51%), Positives = 132/190 (69%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S+ V+PV + +D I+IVKLR+GQELRLRA +K GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYVKKRSGKEHAKWNPT 179
Query: 536 ATVSFMYEPE 565
A V+F Y+P+
Sbjct: 180 AGVAFEYDPD 189
[69][TOP]
>UniRef100_UPI00006A469F PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 n=1 Tax=Ciona intestinalis
RepID=UPI00006A469F
Length = 277
Score = 179 bits (454), Expect = 2e-43
Identities = 93/190 (48%), Positives = 129/190 (67%), Gaps = 3/190 (1%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
+A P V I EL +D +F + DTD S AN++RRV I+EVPT+AID ++IE NSSVLNDE
Sbjct: 3 FANQPTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
F++HR+GLIPLTS+ + +++SRDC D C+ CSVEF+L VKC + T VT++D
Sbjct: 63 FLSHRIGLIPLTSDDVVDKIQYSRDCMC---DDFCQDCSVEFYLDVKCTGEGTRQVTTRD 119
Query: 362 LYSSDHTVVPVDFSP--DTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
L S + VVP+ D+S I+I KLR+GQ L+ +A A+KG GK+HAKW
Sbjct: 120 LISMNPKVVPITSRSRGDSSKSFGEQDDILIAKLRKGQSLKFKAFAKKGFGKEHAKWQCV 179
Query: 536 ATVSFMYEPE 565
+ V+F Y+P+
Sbjct: 180 SAVAFEYDPD 189
[70][TOP]
>UniRef100_Q2GNN7 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2GNN7_CHAGB
Length = 338
Score = 176 bits (446), Expect = 1e-42
Identities = 92/182 (50%), Positives = 120/182 (65%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P VKI + +FEL + D + AN+LRRVM+ E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAH 75
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL ++ + F+RDCD DG CE CSV L KC DE + V ++DL +
Sbjct: 76 RLGLIPLNADGVEGLLFARDCDC---DGCCEHCSVRLTLHAKCTGDENMHVFARDLVPTG 132
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
+ V +P S + G +I+KLR GQE++L IA+KGI K+HAKW+P+A + F Y
Sbjct: 133 ERINQVLGTPVVSDSEGL--GALILKLRPGQEIKLECIAKKGIAKEHAKWAPSAAIGFEY 190
Query: 557 EP 562
+P
Sbjct: 191 DP 192
[71][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 176 bits (445), Expect = 2e-42
Identities = 99/199 (49%), Positives = 126/199 (63%), Gaps = 4/199 (2%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
V + L+D+ F+L+ D S+ANALRR+MI++VPT++IDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRL 70
Query: 203 GLIPLTSERAMAM----RFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYS 370
GLIPL S +A + ++ D D V L V+C +D+T DVTS DL S
Sbjct: 71 GLIPLDSTKASELVKPYEYTGDDDTA--------TDVHLELNVRCQSDQTRDVTSDDLIS 122
Query: 371 SDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSF 550
D V PV F T SA + GI+I KLR+ Q+L L+ IARKG GKDHAKWSP AT F
Sbjct: 123 HDERVKPVSFG-GTGGGSAKSGGILIAKLRKNQQLSLKCIARKGTGKDHAKWSPVATAVF 181
Query: 551 MYEPEIHINDDLMETLTLK 607
Y P I IN L+ +L K
Sbjct: 182 KYTPLIDINHGLLNSLNGK 200
[72][TOP]
>UniRef100_Q9P5U3 Probable DNA-directed RNA polymerase II chain RPB3 n=1
Tax=Neurospora crassa RepID=Q9P5U3_NEUCR
Length = 337
Score = 176 bits (445), Expect = 2e-42
Identities = 92/182 (50%), Positives = 123/182 (67%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P VKI + + +FEL +T+ S AN+LRRVM++E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL +E + +SRDCD D CE CSV +L KC D+ + V ++DL
Sbjct: 76 RLGLIPLNAEGIEQLLYSRDCDC---DEYCEHCSVTLNLHAKCTGDDIMQVCARDLVPVG 132
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
V V SP + +G +I+KLR GQE++L+ IA+KGI K+H+KW+P+A + F Y
Sbjct: 133 DRVNQVLGSPIINDPE--GQGPLILKLRHGQEIKLQCIAKKGIAKEHSKWAPSAAIGFEY 190
Query: 557 EP 562
+P
Sbjct: 191 DP 192
[73][TOP]
>UniRef100_UPI0000E48A01 PREDICTED: hypothetical protein isoform 1, partial n=1
Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A01
Length = 246
Score = 175 bits (444), Expect = 2e-42
Identities = 91/161 (56%), Positives = 116/161 (72%), Gaps = 1/161 (0%)
Frame = +2
Query: 86 IANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCD 262
+AN++RR +++EVPTIAID VEI+ NSSVL+DEFI+HR+GLIPLTS+ + + F+RDC
Sbjct: 1 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDCG 60
Query: 263 ACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGI 442
+ C CSVE L VKC D+T VTS+DL SS+ VVPV SSD I
Sbjct: 61 C---EEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQESSDYGEVDDI 117
Query: 443 IIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPE 565
+IVKLR+GQELRLRA A+KG GKDHAKW P A ++F Y+P+
Sbjct: 118 LIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAAIAFEYDPD 158
[74][TOP]
>UniRef100_C4QNG7 DNA-directed rna polymerase II subunit, putative n=1
Tax=Schistosoma mansoni RepID=C4QNG7_SCHMA
Length = 266
Score = 171 bits (434), Expect = 3e-41
Identities = 92/188 (48%), Positives = 122/188 (64%), Gaps = 1/188 (0%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V + ++ +F L +TD S+ANA+RRV I+EVPT+AID V+IE N+++LNDE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIA R+GLIPLT + + M + R+C + CE CSVE L V C TD VT D
Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCREF---CEQCSVELTLDVCCTTDAPRHVTGAD 119
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
L SS+ V PV S + I+IVK+R+GQ L+LRAIA+KG GK+HAKW+P A
Sbjct: 120 LISSNRDVQPVPSRDADESSYVGQESILIVKMRKGQRLKLRAIAKKGFGKEHAKWNPTAG 179
Query: 542 VSFMYEPE 565
V F Y+P+
Sbjct: 180 VGFEYDPD 187
[75][TOP]
>UniRef100_Q93338 Protein C36B1.3, partially confirmed by transcript evidence n=1
Tax=Caenorhabditis elegans RepID=Q93338_CAEEL
Length = 282
Score = 170 bits (431), Expect = 7e-41
Identities = 91/196 (46%), Positives = 132/196 (67%), Gaps = 9/196 (4%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P +++ EL +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 185 FIAHRLGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIP S+ M+++RDC+ + C+ CS+ F L++KC + TL VT++
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAE---FCDECSIPFILQMKCKDEATLAVTTEH 119
Query: 362 L---YSSDHTVVP-----VDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDH 517
L ++ D TV P + T + + I+IVKLR+GQEL L+A +KG GK+H
Sbjct: 120 LMPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFGKEH 179
Query: 518 AKWSPAATVSFMYEPE 565
AKW+P V+F Y+P+
Sbjct: 180 AKWNPTCGVAFEYDPD 195
[76][TOP]
>UniRef100_B8PBS2 Predicted protein (Fragment) n=1 Tax=Postia placenta Mad-698-R
RepID=B8PBS2_POSPM
Length = 265
Score = 169 bits (429), Expect = 1e-40
Identities = 88/184 (47%), Positives = 120/184 (65%), Gaps = 2/184 (1%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P V+IREL+ D F + + D ++AN+LRRVM++++PT+AID+VEIE N++VL DEFIAH
Sbjct: 4 PIVRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAH 63
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLG+IPL S MR++RDC C+FC+VE L V C +DVTS L S
Sbjct: 64 RLGMIPLVSSNCDEGMRYTRDCTCL---SWCQFCAVELTLHVACHDGVAMDVTSMHLDVS 120
Query: 374 DHTVV-PVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSF 550
D P +F ++I K+R+GQELRLR IA+KG+ K+HAKWSP + V+F
Sbjct: 121 DELAKRPENFGHPVGKFDPSVSPVLIAKIRKGQELRLRCIAKKGVAKEHAKWSPCSAVAF 180
Query: 551 MYEP 562
Y+P
Sbjct: 181 EYDP 184
[77][TOP]
>UniRef100_UPI0000123F31 Hypothetical protein CBG12350 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI0000123F31
Length = 399
Score = 168 bits (425), Expect = 4e-40
Identities = 90/195 (46%), Positives = 129/195 (66%), Gaps = 8/195 (4%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P +++ EL +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 185 FIAHRLGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIP S+ M+++R+C+ + C+ CS+ F L+ KC + TL VT+ D
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTRECECAE---FCDECSIPFILQTKCTDEATLAVTTAD 119
Query: 362 L--YSSDHTVVP-----VDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
L + TV P + + + I+IVKLR+GQEL L+A A+KG GK+HA
Sbjct: 120 LRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFGKEHA 179
Query: 521 KWSPAATVSFMYEPE 565
KW+P V+F Y+P+
Sbjct: 180 KWNPTCGVAFEYDPD 194
[78][TOP]
>UniRef100_C4XY52 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY52_CLAL4
Length = 307
Score = 167 bits (424), Expect = 5e-40
Identities = 93/185 (50%), Positives = 119/185 (64%), Gaps = 3/185 (1%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
PRV IR+ + D F LR D S+AN+LRR M+SEVPT+AIDLVEI+VN+SVL DE ++H
Sbjct: 10 PRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTSVLADELLSH 69
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL---Y 367
RLGLIPL SE + +SRDC D C CSV+ L KC +D T++V S DL +
Sbjct: 70 RLGLIPLNSEGIENLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMNVYSSDLAKFH 126
Query: 368 SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVS 547
+ PV P ++G +I KLR+ QELRL IA+KGI K+HAKWSP A +
Sbjct: 127 NGSKLGDPVIRDP-------AHRGPLICKLRKHQELRLTCIAKKGIAKEHAKWSPCAAIG 179
Query: 548 FMYEP 562
F Y+P
Sbjct: 180 FEYDP 184
[79][TOP]
>UniRef100_A7EJ53 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7EJ53_SCLS1
Length = 335
Score = 167 bits (423), Expect = 6e-40
Identities = 93/187 (49%), Positives = 117/187 (62%), Gaps = 5/187 (2%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+VKI E FEL + D S AN+LRR ++SEVPTIAID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY--- 367
RLGLIPL S+ + ++RDCD DG CE CSV L +C DE + V ++DL
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---DGNCELCSVTLTLHARCTGDEIMKVYARDLVVDP 131
Query: 368 --SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
++ PV PD G +I KLR+GQELR++ IA KGI K+HAKW+P A
Sbjct: 132 QRANKWVGNPVITDPD-------GLGPVIAKLRKGQELRMKCIALKGIAKEHAKWAPTAA 184
Query: 542 VSFMYEP 562
V F Y+P
Sbjct: 185 VGFEYDP 191
[80][TOP]
>UniRef100_A5E4Q9 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5E4Q9_LODEL
Length = 336
Score = 167 bits (423), Expect = 6e-40
Identities = 92/184 (50%), Positives = 121/184 (65%), Gaps = 2/184 (1%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P V +R+ + D F L+ D S+AN+LRR M++EVPT+AIDLVEI+VN+SVL DEF+AH
Sbjct: 7 PSVIMRDAEKDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL S+ + +SRDC AC D C CSV L KC +D T++V + DL +
Sbjct: 67 RLGLIPLDSQGIENLLYSRDC-AC--DNYCSKCSVTLELTAKCDSDSTMNVCASDLLKLN 123
Query: 377 HTVV--PVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSF 550
++ P+ P N+G +I KLRR QE+RL IA+KGI K+HAKWSP A V F
Sbjct: 124 TELLGKPIIRDPQ-------NRGPLICKLRRHQEIRLTCIAKKGIAKEHAKWSPCAAVGF 176
Query: 551 MYEP 562
Y+P
Sbjct: 177 EYDP 180
[81][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
Length = 275
Score = 166 bits (421), Expect = 1e-39
Identities = 97/200 (48%), Positives = 125/200 (62%), Gaps = 2/200 (1%)
Frame = +2
Query: 8 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 187
+R P + +R L+ D FEL++TD S ANALRR M++EVPTIAIDLVE+E N++VLNDEF
Sbjct: 10 SRKPTISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEF 69
Query: 188 IAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL- 364
+AHRLGLIPL S A+ + + G + F L V C + +DVTS DL
Sbjct: 70 LAHRLGLIPLVSRNAVYWK-----RPFEWSGDNDIIETAFSLDVMCEQEGVMDVTSNDLV 124
Query: 365 -YSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
D VVPV++ SA K I+I KLRRGQ L+L A ARKGIGKDHAK+ P AT
Sbjct: 125 PLEPDAGVVPVNY------HSATEKPIVICKLRRGQHLKLVARARKGIGKDHAKFIPVAT 178
Query: 542 VSFMYEPEIHINDDLMETLT 601
F Y+ +I ++ M +T
Sbjct: 179 AVFQYKAQITLSASAMADMT 198
[82][TOP]
>UniRef100_A3GF98 45 kDa subunit of RNA polymerase II n=1 Tax=Pichia stipitis
RepID=A3GF98_PICST
Length = 315
Score = 166 bits (420), Expect = 1e-39
Identities = 91/182 (50%), Positives = 118/182 (64%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P V IRE + D F LRD D ++AN++RRVM++EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIRESERDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGL+PL SE + +SRDC D C CSV L KC TD T++V + DL +
Sbjct: 69 RLGLVPLVSEGIENLTYSRDCTC---DNYCPKCSVRLELTAKCDTDSTMNVYATDL-AKF 124
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
H + D +G +I KLR+ QELRL IA+KGI K+HAKWSP + V F Y
Sbjct: 125 HNGSRLG---DPVVRDVQKRGPLICKLRKHQELRLTCIAKKGIAKEHAKWSPCSAVGFEY 181
Query: 557 EP 562
+P
Sbjct: 182 DP 183
[83][TOP]
>UniRef100_A6S2E5 RNA polymerase II subunit 3 n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6S2E5_BOTFB
Length = 336
Score = 166 bits (419), Expect = 2e-39
Identities = 92/187 (49%), Positives = 117/187 (62%), Gaps = 5/187 (2%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+VKI E FEL + D S AN+LRR ++SEVPTIAID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY--- 367
RLGLIPL S+ + ++RDCD +G CE CSV L +C DE + V ++DL
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---EGNCELCSVTLTLHARCTGDEIMKVYARDLVVDP 131
Query: 368 --SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
++ PV PD G +I KLR+GQELR++ IA KGI K+HAKW+P A
Sbjct: 132 QRANKWVGNPVITDPD-------GLGPVIAKLRKGQELRMKCIALKGIAKEHAKWAPTAA 184
Query: 542 VSFMYEP 562
V F Y+P
Sbjct: 185 VGFEYDP 191
[84][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BWN8_THAPS
Length = 297
Score = 164 bits (416), Expect = 4e-39
Identities = 96/210 (45%), Positives = 128/210 (60%), Gaps = 10/210 (4%)
Frame = +2
Query: 11 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 190
R P+V+I + +F L +TD S+AN LRR+MI+EVPT+AIDLVE NSSVLNDE+I
Sbjct: 2 RFPKVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYI 61
Query: 191 AHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHL----------RVKCMTDET 340
AHRLGL+P+ R MA ++C D +C C VEF L R D
Sbjct: 62 AHRLGLVPI---RFMAEGSLKECVCYD---RCPRCCVEFELDVNFDKVNQTRPDTERDLA 115
Query: 341 LDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
L VTS+DL S++ V P F + D + ++GI IVKL GQ L+L+AIAR GI K+HA
Sbjct: 116 LTVTSRDLISNNMLVSPAHFLNEEEQDESHDEGISIVKLGPGQHLKLKAIARMGISKEHA 175
Query: 521 KWSPAATVSFMYEPEIHINDDLMETLTLKE 610
KW P A ++ + P I IN++ LTL++
Sbjct: 176 KWCPVAVATYRFWPIITINEEACNMLTLEQ 205
[85][TOP]
>UniRef100_Q6BUW0 DEHA2C07546p n=1 Tax=Debaryomyces hansenii RepID=Q6BUW0_DEBHA
Length = 311
Score = 164 bits (416), Expect = 4e-39
Identities = 91/182 (50%), Positives = 116/182 (63%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
PRV IR + F L+D D ++AN++RR M++EVPT+AIDLVEIEVN+SVL DEFI+H
Sbjct: 11 PRVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISH 70
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL SE + +SRDC D C CSV+ L KC TD T+ V S DL +
Sbjct: 71 RLGLIPLNSEGIDNLSYSRDCTC---DQYCANCSVKLELTAKCDTDSTMSVYSSDL-AKF 126
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
H + D + KG +I KLR+ QELR+ IA+KGI K+HAKWSP + F Y
Sbjct: 127 HNGSKLG---DPVARDNHRKGPLICKLRKHQELRITCIAKKGIAKEHAKWSPCGAIGFEY 183
Query: 557 EP 562
+P
Sbjct: 184 DP 185
[86][TOP]
>UniRef100_C5MDV1 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MDV1_CANTT
Length = 327
Score = 164 bits (415), Expect = 5e-39
Identities = 89/182 (48%), Positives = 114/182 (62%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P V IR + D F LR+ D S+AN++RR M++EVPT++IDLVEIE N+SVL DEF++H
Sbjct: 9 PGVTIRTAEKDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIEKNTSVLADEFLSH 68
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL SE + +SRDC D C CSV L C + T++V + DL +
Sbjct: 69 RLGLIPLVSEGIKDLTYSRDCTC---DNYCTKCSVTLQLLASCTAETTMNVYASDLLKTT 125
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
HT + D N+G II KLR+ QEL L IA+KGI K+HAKWSP A V F Y
Sbjct: 126 HTGSKLG---DPVFRDPRNRGPIICKLRKDQELALTCIAKKGIAKEHAKWSPCAAVGFEY 182
Query: 557 EP 562
+P
Sbjct: 183 DP 184
[87][TOP]
>UniRef100_B2B158 Predicted CDS Pa_3_9390 n=1 Tax=Podospora anserina
RepID=B2B158_PODAN
Length = 334
Score = 164 bits (415), Expect = 5e-39
Identities = 92/187 (49%), Positives = 121/187 (64%), Gaps = 5/187 (2%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P VKI + +FEL++ D S AN+LRRVM++E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAH 75
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL +E + +SRDCD + CE CSV+ L KC E + V+++DL
Sbjct: 76 RLGLIPLNAEGVEHLLYSRDCDC---EEYCENCSVKLTLHAKCTGYENMSVSARDL---- 128
Query: 377 HTVVPVDFSPDTSSDSAV-----NKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
VPV + S + V G +I+KLR QE++L IA+KGI K+HAKW+P+A
Sbjct: 129 ---VPVGERINQSLGTPVINDKDGTGPLILKLRPEQEIKLECIAKKGIAKEHAKWAPSAA 185
Query: 542 VSFMYEP 562
+ F Y+P
Sbjct: 186 IGFEYDP 192
[88][TOP]
>UniRef100_A8XFM5 C. briggsae CBR-RPB-3 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XFM5_CAEBR
Length = 280
Score = 163 bits (413), Expect = 9e-39
Identities = 90/195 (46%), Positives = 127/195 (65%), Gaps = 8/195 (4%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P +++ EL +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 185 FIAHRLGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHR+GLIP S+ M+++R C+ C+ CS+ F L+ KC + TL VT+ D
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTR----CECAEFCDECSIPFILQTKCTDEATLAVTTAD 118
Query: 362 L--YSSDHTVVP-----VDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
L + TV P + + + I+IVKLR+GQEL L+A A+KG GK+HA
Sbjct: 119 LRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFGKEHA 178
Query: 521 KWSPAATVSFMYEPE 565
KW+P V+F Y+P+
Sbjct: 179 KWNPTCGVAFEYDPD 193
[89][TOP]
>UniRef100_B6K2N9 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6K2N9_SCHJY
Length = 308
Score = 162 bits (410), Expect = 2e-38
Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 5/187 (2%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P V I+ + + F L +TD S+AN+LRRV++ E+PT+AIDLVEI VN+SV+ DEF+AH
Sbjct: 5 PNVTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAH 64
Query: 197 RLGLIPLTSER-----AMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
RLG+IPL S + + ++R+CD D C CSVE L KC D T++V ++D
Sbjct: 65 RLGMIPLNSNNIDEPPPVGLEYTRNCDC---DQYCNKCSVELSLNAKCTGDGTMEVYARD 121
Query: 362 LYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
L ++ + D S G +I+KLR+ QE+ LR IA+KGI K+HAKWSP A
Sbjct: 122 LVVDSNSTLGQPVLADARS-----HGPLILKLRKEQEVSLRCIAKKGIAKEHAKWSPTAA 176
Query: 542 VSFMYEP 562
VSF Y+P
Sbjct: 177 VSFEYDP 183
[90][TOP]
>UniRef100_Q5A462 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
albicans RepID=Q5A462_CANAL
Length = 318
Score = 162 bits (409), Expect = 3e-38
Identities = 86/182 (47%), Positives = 114/182 (62%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P V IRE + D F L++ D ++AN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL SE + +SRDC D C CSV L C T+ T++V + DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLIANCATESTMNVYASDLQKMS 125
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
H + D +G +I KLR+ QEL L IA+KGI K+HAKWSP A + F Y
Sbjct: 126 HNGSKLG---DPVIRDPQARGPLICKLRKHQELSLTCIAKKGIAKEHAKWSPTAAIGFEY 182
Query: 557 EP 562
+P
Sbjct: 183 DP 184
[91][TOP]
>UniRef100_B9WGL5 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Candida
dubliniensis CD36 RepID=B9WGL5_CANDC
Length = 313
Score = 162 bits (409), Expect = 3e-38
Identities = 86/182 (47%), Positives = 114/182 (62%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P V IRE + D F L++ D ++AN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL SE + +SRDC D C CSV L C T+ T++V + DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLVANCATESTMNVYASDLQKMS 125
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
H + D +G +I KLR+ QEL L IA+KGI K+HAKWSP A + F Y
Sbjct: 126 HNGSKLG---DPVIRDPQARGPLICKLRKHQELSLTCIAKKGIAKEHAKWSPTAAIGFEY 182
Query: 557 EP 562
+P
Sbjct: 183 DP 184
[92][TOP]
>UniRef100_B0D0L9 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D0L9_LACBS
Length = 304
Score = 161 bits (408), Expect = 3e-38
Identities = 91/202 (45%), Positives = 125/202 (61%), Gaps = 20/202 (9%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P V+IRELK D F L + D + AN+LRRVM++++PT+AID+VEIE+N++VL DEFIAH
Sbjct: 9 PTVRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAH 68
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLG++PL S A+R +RDC G C FC++ L V C D T++VTS L
Sbjct: 69 RLGMVPLLSSNCDEAIRSTRDCTCLAG---CSFCAIMLVLNVGCHDDTTMEVTSAHL--- 122
Query: 374 DHTVVPVDFSPDTSSDSA-------------VNKG------IIIVKLRRGQELRLRAIAR 496
V+P +SDS V K I+I K+R+GQEL+++ +A+
Sbjct: 123 --DVIPYPEENLDTSDSGEELSKRGEYFGHPVGKNEPGVAPILICKIRKGQELKVKCVAK 180
Query: 497 KGIGKDHAKWSPAATVSFMYEP 562
KGI K+HAKWSP + VSF Y+P
Sbjct: 181 KGIAKEHAKWSPCSAVSFEYDP 202
[93][TOP]
>UniRef100_Q4P8L3 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P8L3_USTMA
Length = 329
Score = 161 bits (407), Expect = 4e-38
Identities = 88/198 (44%), Positives = 122/198 (61%), Gaps = 16/198 (8%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P++ +R+L D A F L + D S AN+LRR+MI+++PT+AID+VEI N++VL DE +AH
Sbjct: 12 PKITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAH 71
Query: 197 RLGLIPLTS-ERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLG++PL S + A A+ RDC DG C+ CSVE LR +C T L+VTS+DL S
Sbjct: 72 RLGMVPLLSMDCAKALVDHRDCACEDG---CDRCSVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 374 DHTVVPVDFSPDTSSDSAVNK---------------GIIIVKLRRGQELRLRAIARKGIG 508
D + D ++ A K I++VK+ +GQEL +R IARKG
Sbjct: 129 DTIENATIYDDDAMAEPAAPKHPDFGRPVGHDGSIAPIMLVKMSKGQELDIRCIARKGFA 188
Query: 509 KDHAKWSPAATVSFMYEP 562
K+HAKWSP + V F Y+P
Sbjct: 189 KEHAKWSPCSAVGFEYDP 206
[94][TOP]
>UniRef100_UPI000023DAEE hypothetical protein FG01447.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023DAEE
Length = 337
Score = 160 bits (405), Expect = 8e-38
Identities = 91/191 (47%), Positives = 116/191 (60%), Gaps = 4/191 (2%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+VKI FEL T+ S ANA+RRV+ +EVPTIAIDLVEIE NSSVL DEFIAH
Sbjct: 15 PQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAH 74
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY--- 367
RLGLIPL S+ + +SRDCD + CE CSV L KC +DE + V ++DL
Sbjct: 75 RLGLIPLDSKGVAELNYSRDCDC---EQYCEQCSVTLTLHAKCTSDEIMKVYARDLVVDG 131
Query: 368 -SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 544
+ P+ P+ G +I KLR+ QEL++ IA+KGI K+HAKW P + V
Sbjct: 132 RHGNSVGSPMIMDPE-------GYGCLIAKLRKHQELKISCIAKKGIAKEHAKWMPTSAV 184
Query: 545 SFMYEPEIHIN 577
F Y+P +N
Sbjct: 185 GFEYDPHNKLN 195
[95][TOP]
>UniRef100_C7YWI1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YWI1_NECH7
Length = 335
Score = 160 bits (405), Expect = 8e-38
Identities = 90/182 (49%), Positives = 113/182 (62%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+VKI FEL T+ + ANALRRV+ +EVPTIAIDLVEIE+NSSVL DEFIAH
Sbjct: 15 PQVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIAH 74
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL S+ + SRDCD + CE CSV +L KC +DE + V ++DL
Sbjct: 75 RLGLIPLDSKGVGELNNSRDCDC---EQYCEQCSVTLNLHAKCTSDEIMKVYARDLVVDG 131
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
V T + G +I KLR+ QEL++ IA+KGI K+HAKW P + V F Y
Sbjct: 132 RHANSVGSPVITDPE---GYGCLIAKLRKDQELKITCIAKKGIAKEHAKWMPTSAVGFEY 188
Query: 557 EP 562
+P
Sbjct: 189 DP 190
[96][TOP]
>UniRef100_A8N5W0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N5W0_COPC7
Length = 366
Score = 160 bits (405), Expect = 8e-38
Identities = 87/202 (43%), Positives = 121/202 (59%), Gaps = 20/202 (9%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P V++RE+K D F L + D + AN+ RRV+++++PT+AIDLVE E N+SVL DE+IAH
Sbjct: 8 PIVRVREVKKDKVNFVLENVDLAFANSFRRVVMADIPTVAIDLVEFEANTSVLPDEYIAH 67
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLG IPL S A+R++RDC QC +C+V+ L V C D T++VTS L
Sbjct: 68 RLGQIPLISTNCDEAIRYTRDCTCL---SQCSYCAVQLRLDVACNDDTTMEVTSNHL--- 121
Query: 374 DHTVVPVD-------------------FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIAR 496
VVP+D F + ++I K+R+GQELR++ IA+
Sbjct: 122 --EVVPLDDYMQEEIQHGEEKAKRTQWFGHPVGKNEPGTPPVLICKIRKGQELRVKCIAK 179
Query: 497 KGIGKDHAKWSPAATVSFMYEP 562
KGI K+HAKWSP + VSF Y+P
Sbjct: 180 KGIAKEHAKWSPCSAVSFEYDP 201
[97][TOP]
>UniRef100_A5DQ44 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DQ44_PICGU
Length = 305
Score = 160 bits (404), Expect = 1e-37
Identities = 88/181 (48%), Positives = 117/181 (64%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV IR+ + D F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH 379
LG+IPL SE + +SRDC D C CSV+ L KC +D T+ V + DL + H
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMSVYATDL-AKFH 124
Query: 380 TVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYE 559
+ D +G +I KLR+ QELRL IA+KGI K+HAKWSP A + F Y+
Sbjct: 125 NGSKLG---DPVVRDHHQRGPLICKLRKHQELRLTCIAKKGIAKEHAKWSPCAAIGFEYD 181
Query: 560 P 562
P
Sbjct: 182 P 182
[98][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CSH3_CRYPV
Length = 355
Score = 159 bits (402), Expect = 2e-37
Identities = 88/201 (43%), Positives = 120/201 (59%), Gaps = 1/201 (0%)
Frame = +2
Query: 11 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 190
R P+ +I EL + RF L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 191 AHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYS 370
HR+GLIPL S F D C+ +C CSVE+ L V C T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124
Query: 371 -SDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVS 547
+ T+VP+ S +N GI+I KL GQ + +R A KGIGK HAKW P + +
Sbjct: 125 VATSTLVPMPVPKKDDSVDGMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSVAT 184
Query: 548 FMYEPEIHINDDLMETLTLKE 610
F E ++ IN L LTLK+
Sbjct: 185 FTNEADVRINYSLSSNLTLKQ 205
[99][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
RepID=Q5CNH1_CRYHO
Length = 355
Score = 159 bits (402), Expect = 2e-37
Identities = 88/201 (43%), Positives = 120/201 (59%), Gaps = 1/201 (0%)
Frame = +2
Query: 11 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 190
R P+ +I EL + RF L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 191 AHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYS 370
HR+GLIPL S F D C+ +C CSVE+ L V C T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124
Query: 371 -SDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVS 547
+ T+VP+ S +N GI+I KL GQ + +R A KGIGK HAKW P + +
Sbjct: 125 VATSTLVPMPVPKKDDSVDGMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSVAT 184
Query: 548 FMYEPEIHINDDLMETLTLKE 610
F E ++ IN L LTLK+
Sbjct: 185 FTNEADVRINYSLSSNLTLKQ 205
[100][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
Length = 348
Score = 159 bits (402), Expect = 2e-37
Identities = 89/202 (44%), Positives = 122/202 (60%), Gaps = 3/202 (1%)
Frame = +2
Query: 11 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 190
R P ++I E + +F L +TD S+ANALRR+M++E+PT+AIDLV I N+SVL+DEFI
Sbjct: 7 RTPHIEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFI 66
Query: 191 AHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYS 370
HRLGL+P+ S + F D C +C CSV++ L +KC +VT D+YS
Sbjct: 67 VHRLGLLPIDSRQIRDFNFK---DRCGCQERCNKCSVDYTLDLKCEGPTVRNVTHLDIYS 123
Query: 371 S---DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
+ + +PV D + + N+GI+I KL GQ L R A KGIGK HAKW P AT
Sbjct: 124 TLPVPNIPLPVPRKEDVTDPN--NEGILIAKLGPGQSLTARMTATKGIGKFHAKWIPVAT 181
Query: 542 VSFMYEPEIHINDDLMETLTLK 607
+F E +I IN M ++LK
Sbjct: 182 ATFTNEADIRINQSSMTNVSLK 203
[101][TOP]
>UniRef100_Q0CYF6 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Aspergillus terreus NIH2624 RepID=Q0CYF6_ASPTN
Length = 331
Score = 158 bits (399), Expect = 4e-37
Identities = 85/188 (45%), Positives = 118/188 (62%), Gaps = 6/188 (3%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F+L D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 13 PQVTVREAEPYRVDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAH 72
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL--- 364
RLGLIPL S+ + ++RDC+ D C CSV L +C D+ + V ++DL
Sbjct: 73 RLGLIPLNSKNCDQDLEYTRDCECED---HCARCSVTLQLHARCTGDDIMRVYARDLAVA 129
Query: 365 --YSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
++D PV P+ KG +I KLRRGQEL++ IA+KGI K+HAKW+P A
Sbjct: 130 GERANDWVGTPVITDPE-------GKGPLICKLRRGQELKMTCIAKKGIAKEHAKWAPTA 182
Query: 539 TVSFMYEP 562
+ F Y+P
Sbjct: 183 AIGFEYDP 190
[102][TOP]
>UniRef100_UPI000151B3AC conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151B3AC
Length = 305
Score = 157 bits (398), Expect = 5e-37
Identities = 87/181 (48%), Positives = 116/181 (64%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV IR+ + D F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH 379
LG+IPL SE + +SRDC D C C V+ L KC +D T+ V + DL + H
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCLVKLELTAKCDSDSTMSVYATDL-AKFH 124
Query: 380 TVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYE 559
+ D +G +I KLR+ QELRL IA+KGI K+HAKWSP A + F Y+
Sbjct: 125 NGSKLG---DPVVRDHHQRGPLICKLRKHQELRLTCIAKKGIAKEHAKWSPCAAIGFEYD 181
Query: 560 P 562
P
Sbjct: 182 P 182
[103][TOP]
>UniRef100_Q6CQL6 KLLA0D16170p n=1 Tax=Kluyveromyces lactis RepID=Q6CQL6_KLULA
Length = 307
Score = 157 bits (396), Expect = 8e-37
Identities = 88/182 (48%), Positives = 118/182 (64%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+VKIRE D F L + D ++AN+LRRVMISE+PT+AID VEIE N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL S + + RDC D C+ CSVE L ++ T +V +KDL +
Sbjct: 66 RLGLIPLQSADIDQVVYCRDCYCED---HCDRCSVELILHAIGESESTTNVYAKDLQITS 122
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
+ + D N G++I KLR+GQE+R++ IA+KGI K+HAKWSP+A + F Y
Sbjct: 123 -DLKGRNIGHPIIQDREAN-GVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAAIEFEY 180
Query: 557 EP 562
+P
Sbjct: 181 DP 182
[104][TOP]
>UniRef100_C1H5R6 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H5R6_PARBA
Length = 352
Score = 157 bits (396), Expect = 8e-37
Identities = 85/183 (46%), Positives = 116/183 (63%), Gaps = 1/183 (0%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 197 RLGLIPLTSERAMA-MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ A M +SRDCD +G C C V L V+C ++ + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCIVMLSLNVRCTGEDVMKVYARDLIIV 130
Query: 374 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFM 553
SP + A KG +I KL RGQEL++ IA+KGI K+H+KW+P A V F
Sbjct: 131 GDRANEWVGSPVIT--DAEGKGPVICKLSRGQELKMTCIAKKGIAKEHSKWAPTAAVGFE 188
Query: 554 YEP 562
Y+P
Sbjct: 189 YDP 191
[105][TOP]
>UniRef100_C1GI99 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GI99_PARBD
Length = 352
Score = 157 bits (396), Expect = 8e-37
Identities = 85/183 (46%), Positives = 116/183 (63%), Gaps = 1/183 (0%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 197 RLGLIPLTSERAMA-MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ A M +SRDCD +G C C V L V+C ++ + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDLIIV 130
Query: 374 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFM 553
SP + A KG +I KL RGQEL++ IA+KGI K+H+KW+P A V F
Sbjct: 131 GDRANEWVGSPVIT--DAEGKGPVICKLSRGQELKMTCIAKKGIAKEHSKWAPTAAVGFE 188
Query: 554 YEP 562
Y+P
Sbjct: 189 YDP 191
[106][TOP]
>UniRef100_C0SC71 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SC71_PARBP
Length = 283
Score = 157 bits (396), Expect = 8e-37
Identities = 85/183 (46%), Positives = 116/183 (63%), Gaps = 1/183 (0%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 197 RLGLIPLTSERAMA-MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ A M +SRDCD +G C C V L V+C ++ + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDLIIV 130
Query: 374 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFM 553
SP + A KG +I KL RGQEL++ IA+KGI K+H+KW+P A V F
Sbjct: 131 GDRANEWVGSPVIT--DAEGKGPVICKLSRGQELKMTCIAKKGIAKEHSKWAPTAAVGFE 188
Query: 554 YEP 562
Y+P
Sbjct: 189 YDP 191
[107][TOP]
>UniRef100_A1C6Y7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus clavatus
RepID=A1C6Y7_ASPCL
Length = 333
Score = 157 bits (396), Expect = 8e-37
Identities = 86/188 (45%), Positives = 120/188 (63%), Gaps = 6/188 (3%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYHVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAH 71
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY-- 367
RLGLIPL S+ + ++RDCD D +C CSV L +C DE + V ++DL
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCDCED---RCARCSVTLTLHARCTGDEIMPVYARDLVVT 128
Query: 368 ---SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
+++ PV P+ KG +I KLRRGQEL++ IA+KG+ K+HAKW+P A
Sbjct: 129 GERANEWVGTPVLTDPE-------GKGSLICKLRRGQELKMTCIAKKGMAKEHAKWAPTA 181
Query: 539 TVSFMYEP 562
V F Y+P
Sbjct: 182 AVGFEYDP 189
[108][TOP]
>UniRef100_P16370 DNA-directed RNA polymerase II subunit RPB3 n=6 Tax=Saccharomyces
cerevisiae RepID=RPB3_YEAST
Length = 318
Score = 157 bits (396), Expect = 8e-37
Identities = 87/182 (47%), Positives = 118/182 (64%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+VKIRE D F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL S + +SRDC D C+ CSV L+ ++ T +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 122
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
+ ++ + D N G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F Y
Sbjct: 123 N-LMGRNIGHPIIQDKEGN-GVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY 180
Query: 557 EP 562
+P
Sbjct: 181 DP 182
[109][TOP]
>UniRef100_A1DHL4 RNA polymerase II subunit 3 n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1DHL4_NEOFI
Length = 336
Score = 156 bits (395), Expect = 1e-36
Identities = 84/183 (45%), Positives = 116/183 (63%), Gaps = 1/183 (0%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ + ++RDC+ D C CSV L +C DE + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDEIMPVYARDLVVS 128
Query: 374 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFM 553
++ D KG +I KLRRGQEL++ +A+KGI K+HAKW+P A V F
Sbjct: 129 GERA--NEWVGDPVITDPEGKGPLICKLRRGQELKMTCVAKKGIAKEHAKWAPTAAVGFE 186
Query: 554 YEP 562
Y+P
Sbjct: 187 YDP 189
[110][TOP]
>UniRef100_Q75B05 ADL120Cp n=1 Tax=Eremothecium gossypii RepID=Q75B05_ASHGO
Length = 311
Score = 156 bits (394), Expect = 1e-36
Identities = 87/182 (47%), Positives = 117/182 (64%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+VKIRE D F L + D S+AN+LRR+MI+E+PT+AID VEIE N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISH 65
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGL+PL S+ + + RDC D C+ CSV L ++ T +V +KDL
Sbjct: 66 RLGLVPLQSKDIDQLVYCRDCFCED---HCDRCSVLLTLHAVGESESTTNVYAKDLQIVS 122
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
+ + D N G++I KLR+GQELRL+ +A+KGI K+HAKWSPAA + F Y
Sbjct: 123 -DLGGKNIGHPIIQDKEAN-GVLICKLRKGQELRLKCVAKKGIAKEHAKWSPAAAIEFEY 180
Query: 557 EP 562
+P
Sbjct: 181 DP 182
[111][TOP]
>UniRef100_C0NSH0 DNA-directed RNA polymerase II polypeptide n=1 Tax=Ajellomyces
capsulatus G186AR RepID=C0NSH0_AJECG
Length = 475
Score = 156 bits (394), Expect = 1e-36
Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 5/187 (2%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F L D + AN+LRR +++E+PT+AID+VEIE N+SVL DEFI+H
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72
Query: 197 RLGLIPLTSERAMA-MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ A M +SRDCD +G C C V L+ +C ++ + V ++DL
Sbjct: 73 RLGLIPLNSKNCDADMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL--- 126
Query: 374 DHTVVPVDFSPDTSSD----SAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
VV D + + + A KG +I KLRRGQE+++ IA+KGI K+HAKW+P A
Sbjct: 127 ---VVVGDRANEWVGNPVIMDAEGKGPVICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAA 183
Query: 542 VSFMYEP 562
V F Y+P
Sbjct: 184 VGFEYDP 190
[112][TOP]
>UniRef100_Q6FPN4 Similar to uniprot|P16370 Saccharomyces cerevisiae YIL021w RPB3 n=1
Tax=Candida glabrata RepID=Q6FPN4_CANGA
Length = 312
Score = 155 bits (393), Expect = 2e-36
Identities = 86/182 (47%), Positives = 118/182 (64%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+VKIRE D F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEF+AH
Sbjct: 6 PQVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAH 65
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL S + +SRDC D C+ CSV L+ ++ T +V +KDL
Sbjct: 66 RLGLIPLQSTDIEQLEYSRDCFCED---HCDKCSVVLTLQAVGESESTTNVYAKDLLIVS 122
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
+ ++ + D N G++I KLR+GQEL+L IA+KGI K+HAKW PAA + F Y
Sbjct: 123 N-LMGRNIGHPIIQDKEGN-GVLICKLRKGQELKLTCIAKKGIAKEHAKWGPAAAIEFEY 180
Query: 557 EP 562
+P
Sbjct: 181 DP 182
[113][TOP]
>UniRef100_C5GT99 RNA polymerase II subunit 3 n=2 Tax=Ajellomyces dermatitidis
RepID=C5GT99_AJEDR
Length = 346
Score = 155 bits (393), Expect = 2e-36
Identities = 86/187 (45%), Positives = 119/187 (63%), Gaps = 5/187 (2%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F L D + AN+LRR +++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 197 RLGLIPLTSERAMA-MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ A M +SRDCD +G C C V L+ +C ++ + V ++DL
Sbjct: 73 RLGLIPLNSKNCDADMYYSRDCDC---EGGCARCVVTLSLQARCTGEDIMKVYARDL--- 126
Query: 374 DHTVVPVDFSPDTSSD----SAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
VV D + + + A KG +I KLRRGQE+++ +A+KGI K+HAKW+P A
Sbjct: 127 ---VVVGDRANEWVGNPVITDAEGKGPLICKLRRGQEIKMTCVAKKGIAKEHAKWAPTAA 183
Query: 542 VSFMYEP 562
V F Y+P
Sbjct: 184 VGFEYDP 190
[114][TOP]
>UniRef100_B6QC29 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC29_PENMQ
Length = 352
Score = 155 bits (393), Expect = 2e-36
Identities = 88/189 (46%), Positives = 119/189 (62%), Gaps = 7/189 (3%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SVL DEF+AH
Sbjct: 12 PQVTVRETEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAH 71
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKC-MTDETLDVTSKDLY- 367
RLGLIPL S+ M ++RDC + C CSV L +C D+ + V S+DL
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDLVV 128
Query: 368 ----SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
+++ PV P+ KG +I KL +GQEL+L IARKGI K+HAKWSP
Sbjct: 129 TGDRANEWVGNPVITDPE-------GKGPLIAKLIKGQELKLTCIARKGIAKEHAKWSPT 181
Query: 536 ATVSFMYEP 562
+ V F Y+P
Sbjct: 182 SAVGFEYDP 190
[115][TOP]
>UniRef100_C5DHI5 KLTH0E04598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DHI5_LACTC
Length = 328
Score = 155 bits (392), Expect = 2e-36
Identities = 86/182 (47%), Positives = 119/182 (65%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+VKIRE D F L + D ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISH 65
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL S + + RDC D C+ CSV L+ ++ T +V +KDL
Sbjct: 66 RLGLIPLQSSDINDLIYCRDCYCED---HCDRCSVVLTLQAVGESESTTNVYAKDLVIVS 122
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
+ ++ + D N G++I KLR+GQEL+L+ +A+KGI K+HAKWSPAA + F Y
Sbjct: 123 N-LMGRNIGHPIIQDKDGN-GVLICKLRKGQELKLKCVAKKGISKEHAKWSPAAAIEFEY 180
Query: 557 EP 562
+P
Sbjct: 181 DP 182
[116][TOP]
>UniRef100_B8M3N2 RNA polymerase II subunit 3 n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8M3N2_TALSN
Length = 353
Score = 155 bits (391), Expect = 3e-36
Identities = 87/189 (46%), Positives = 119/189 (62%), Gaps = 7/189 (3%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SV+ DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAH 71
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKC-MTDETLDVTSKDLY- 367
RLGLIPL S+ M ++RDC + C CSV L +C D+ + V S+DL
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDLVV 128
Query: 368 ----SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
+++ PV P+ KG +I KL +GQEL+L IARKGI K+HAKWSP
Sbjct: 129 TGDRANEWVGNPVITDPE-------GKGPLIAKLIKGQELKLTCIARKGIAKEHAKWSPT 181
Query: 536 ATVSFMYEP 562
+ V F Y+P
Sbjct: 182 SAVGFEYDP 190
[117][TOP]
>UniRef100_A9URC4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9URC4_MONBE
Length = 276
Score = 154 bits (390), Expect = 4e-36
Identities = 82/183 (44%), Positives = 112/183 (61%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
PR+++ E D F L+ D ++AN+ RRVMI+EVPT+AID V I N+SVL+DEF+AH
Sbjct: 11 PRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDEFLAH 70
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPLTSE A + RDC C+ C+ C V L V+ T+E VT+ DL S
Sbjct: 71 RLGLIPLTSEAADKFYYPRDCTLCEMG--CDHCQVMLTLDVEGHTEEPTHVTTDDLISQA 128
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
+S + I+I KL +GQ ++L A A+KG GK+HAKW P A ++F Y
Sbjct: 129 AGDFMAVKPISAREESNIRNPIVICKLAKGQRIQLTAFAKKGFGKEHAKWCPTAGIAFEY 188
Query: 557 EPE 565
+P+
Sbjct: 189 DPD 191
[118][TOP]
>UniRef100_A2QC01 Catalytic activity: N nucleoside triphosphate <=> N diphosphate +
(RNA)(N) n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QC01_ASPNC
Length = 338
Score = 154 bits (389), Expect = 5e-36
Identities = 84/188 (44%), Positives = 115/188 (61%), Gaps = 6/188 (3%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F+L D + AN+LRRVM+SE+PT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ + ++RDC+ D C CSV L +C D+ + V ++DL S
Sbjct: 72 RLGLIPLISKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTGDDIMRVYARDLVVS 128
Query: 374 DHTV-----VPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
PV P+ G +I KLRRGQEL++ IA+KGI K+HAKW P +
Sbjct: 129 GERANEWVGNPVILDPE-------GNGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPTS 181
Query: 539 TVSFMYEP 562
+ F Y+P
Sbjct: 182 AIGFEYDP 189
[119][TOP]
>UniRef100_P37382 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces pombe RepID=RPB3_SCHPO
Length = 297
Score = 154 bits (389), Expect = 5e-36
Identities = 80/185 (43%), Positives = 119/185 (64%), Gaps = 5/185 (2%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+ IR + + F L +T ++AN+LRRV+++E+PT+AIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 203 GLIPLTSER-----AMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY 367
G+IPL S + + ++R+CD D C CSVE L KC + T+++ ++DL
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123
Query: 368 SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVS 547
S ++ + D S +G +I KLR+ QE+ LR IA+KGI K+HAKWSP + V+
Sbjct: 124 VSSNSSLGHPILADPKS-----RGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVA 178
Query: 548 FMYEP 562
F Y+P
Sbjct: 179 FEYDP 183
[120][TOP]
>UniRef100_UPI000069DABC DNA-directed RNA polymerase II subunit RPB3 (RNA polymerase II
subunit B3) (RNA polymerase II subunit 3) (DNA-directed
RNA polymerase II subunit C) (DNA-directed RNA
polymerase II 33 kDa polypeptide) (RPB33) (RPB31). n=1
Tax=Xenopus (Silurana) tropicalis RepID=UPI000069DABC
Length = 275
Score = 154 bits (388), Expect = 7e-36
Identities = 88/191 (46%), Positives = 129/191 (67%), Gaps = 4/191 (2%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVT--S 355
FIAHR+GLIPLTS+ + +++SR +G C C+ +F + C+ + +T +
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRGNSVTEG---CR-CANKFTGLLGCLPFPSFQITQVT 118
Query: 356 KDLYSSDHTVVPVDFSPDTSSDSAVNK-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
K + ++ ++ S D + V + I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 119 KLVNTTFFSLQVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 533 AATVSFMYEPE 565
A V+F Y+P+
Sbjct: 179 TAGVAFEYDPD 189
[121][TOP]
>UniRef100_Q1DX59 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
RepID=Q1DX59_COCIM
Length = 345
Score = 154 bits (388), Expect = 7e-36
Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 5/187 (2%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ + M ++R+CD +G C C + L KC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCVITLQLHAKCTGEGVMVVYARDL--- 126
Query: 374 DHTVVPVDFSPDTSSDSAVN----KGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
VV D + + + +N KG II KLRRGQE+++ +KGI K+HAKWSP A
Sbjct: 127 ---VVVGDRANEWVGNPVINDPAGKGPIICKLRRGQEVKMTCTVKKGIAKEHAKWSPTAA 183
Query: 542 VSFMYEP 562
V F Y+P
Sbjct: 184 VGFEYDP 190
[122][TOP]
>UniRef100_C8V1J2 RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090) n=2
Tax=Emericella nidulans RepID=C8V1J2_EMENI
Length = 333
Score = 154 bits (388), Expect = 7e-36
Identities = 83/188 (44%), Positives = 118/188 (62%), Gaps = 6/188 (3%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F+L D + AN+LRRVM++E+PT+AID+VE+E NSSVL DE +AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY-- 367
RLGLIPL S+ + ++RDC+ D C CSV L +C +DE + V ++DL
Sbjct: 72 RLGLIPLDSKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTSDEIMRVYARDLVIT 128
Query: 368 ---SSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
+++ PV PD G +I KLRRGQEL++ IA+KGI K+H+KW+P A
Sbjct: 129 GERANEWVGNPVITDPD-------GNGPLICKLRRGQELKMTCIAKKGIAKEHSKWAPTA 181
Query: 539 TVSFMYEP 562
+ F Y+P
Sbjct: 182 AIGFEYDP 189
[123][TOP]
>UniRef100_C5P0B5 DNA-directed RNA polymerase II 45 kDa polypeptide, putative n=1
Tax=Coccidioides posadasii C735 delta SOWgp
RepID=C5P0B5_COCP7
Length = 345
Score = 154 bits (388), Expect = 7e-36
Identities = 86/187 (45%), Positives = 117/187 (62%), Gaps = 5/187 (2%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ + M ++R+CD +G C C + L KC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCLITLQLHAKCTGEGVMVVYARDL--- 126
Query: 374 DHTVVPVDFSPDTSSDSAVN----KGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
VV D + + + +N KG II KLRRGQE+++ +KGI K+HAKWSP A
Sbjct: 127 ---VVVGDRANEWVGNPVINDPAGKGPIICKLRRGQEVKMTCTVKKGIAKEHAKWSPTAA 183
Query: 542 VSFMYEP 562
V F Y+P
Sbjct: 184 VGFEYDP 190
[124][TOP]
>UniRef100_Q2UF63 RNA polymerase II n=1 Tax=Aspergillus oryzae RepID=Q2UF63_ASPOR
Length = 342
Score = 153 bits (386), Expect = 1e-35
Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F+L D + AN+LRR M++EVPTIAIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ + ++RDC+ D C CSV L +C D+ + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128
Query: 374 DHTV-----VPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
PV P+ G +I KLRRGQEL++ IA+KGI K+HAKW P A
Sbjct: 129 GERANEWVGNPVITDPE-------GNGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPTA 181
Query: 539 TVSFMYEP 562
V F Y+P
Sbjct: 182 AVGFEYDP 189
[125][TOP]
>UniRef100_B8NGG7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8NGG7_ASPFN
Length = 338
Score = 153 bits (386), Expect = 1e-35
Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 6/188 (3%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F+L D + AN+LRR M++EVPTIAIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ + ++RDC+ D C CSV L +C D+ + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128
Query: 374 DHTV-----VPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
PV P+ G +I KLRRGQEL++ IA+KGI K+HAKW P A
Sbjct: 129 GERANEWVGNPVITDPE-------GNGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPTA 181
Query: 539 TVSFMYEP 562
V F Y+P
Sbjct: 182 AVGFEYDP 189
[126][TOP]
>UniRef100_Q6C2S4 YALI0F05566p n=1 Tax=Yarrowia lipolytica RepID=Q6C2S4_YARLI
Length = 314
Score = 152 bits (384), Expect = 2e-35
Identities = 81/160 (50%), Positives = 108/160 (67%)
Frame = +2
Query: 83 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 262
++AN+LRRVM++E+PT+AIDLVEI N+SVL DEFI+HRLGLIPL S+ + +SRDC
Sbjct: 21 TLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVNDLEYSRDC- 79
Query: 263 ACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGI 442
C D C+ CSV L C D+T+D+ S+DL P + +D A KGI
Sbjct: 80 VC--DEYCDKCSVVLMLDATCTGDDTMDIYSRDLMVHTTPERP-ELGKPIYTDPA-KKGI 135
Query: 443 IIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
+I KLR+ Q LR++ IA+KGI K+HAKWSP A + F Y+P
Sbjct: 136 LICKLRKNQSLRIKCIAKKGIAKEHAKWSPCAAIGFEYDP 175
[127][TOP]
>UniRef100_C4R7L2 RNA polymerase II third largest subunit B44, part of central core
n=1 Tax=Pichia pastoris GS115 RepID=C4R7L2_PICPG
Length = 304
Score = 152 bits (383), Expect = 3e-35
Identities = 85/190 (44%), Positives = 122/190 (64%), Gaps = 5/190 (2%)
Frame = +2
Query: 8 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 187
++ P+V I +DD L D + S+AN+LRR M++EVPT+AIDLVEI++N+SVL DEF
Sbjct: 2 SKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEF 61
Query: 188 IAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY 367
I+HRLGLIPL SE M++SRDC D C+ CSV L + +E + D+Y
Sbjct: 62 ISHRLGLIPLVSEDVEEMKYSRDCTCED---YCDECSVVLELSARHEGEE----GTTDVY 114
Query: 368 SSDHTVVPVDFSPDTSSDSAV-----NKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
SS +++ V + + V ++GI++ KLR QEL +R IA+KGI K+HAKWSP
Sbjct: 115 SS--SLIKVSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGIAKEHAKWSP 172
Query: 533 AATVSFMYEP 562
+ ++F Y+P
Sbjct: 173 CSAIAFEYDP 182
[128][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
GT1 RepID=B9PNQ8_TOXGO
Length = 484
Score = 151 bits (382), Expect = 4e-35
Identities = 89/210 (42%), Positives = 120/210 (57%), Gaps = 14/210 (6%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
S A P + ++E+ + +F L + D SIAN LRRVMISEVP++AIDLV + N+SVL+D
Sbjct: 146 SMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVLHD 205
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
E+I+HRLGL+P+ S R DCD D C CSV++ L V C D L VT +D
Sbjct: 206 EYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTHRD 261
Query: 362 LYSSD--------------HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARK 499
+ + + +PV + GI IVKLR+ Q + +R A K
Sbjct: 262 IVADNARGASLASAGFLDLGCPMPVPLLREMQEKEM--DGIPIVKLRKNQSVNMRMTATK 319
Query: 500 GIGKDHAKWSPAATVSFMYEPEIHINDDLM 589
GIGK HAKWSP AT S+ +EPEI +DL+
Sbjct: 320 GIGKVHAKWSPVATASYKFEPEIAFEEDLL 349
[129][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
RepID=B6KGB1_TOXGO
Length = 484
Score = 151 bits (382), Expect = 4e-35
Identities = 89/210 (42%), Positives = 120/210 (57%), Gaps = 14/210 (6%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
S A P + ++E+ + +F L + D SIAN LRRVMISEVP++AIDLV + N+SVL+D
Sbjct: 146 SMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVLHD 205
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
E+I+HRLGL+P+ S R DCD D C CSV++ L V C D L VT +D
Sbjct: 206 EYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTHRD 261
Query: 362 LYSSD--------------HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARK 499
+ + + +PV + GI IVKLR+ Q + +R A K
Sbjct: 262 IVADNARGASLASAGFLDLGCPMPVPLLREMQEKEM--DGIPIVKLRKNQSVNMRMTATK 319
Query: 500 GIGKDHAKWSPAATVSFMYEPEIHINDDLM 589
GIGK HAKWSP AT S+ +EPEI +DL+
Sbjct: 320 GIGKVHAKWSPVATASYKFEPEIAFEEDLL 349
[130][TOP]
>UniRef100_B0XTA3 RNA polymerase II subunit 3 n=2 Tax=Aspergillus fumigatus
RepID=B0XTA3_ASPFC
Length = 392
Score = 151 bits (382), Expect = 4e-35
Identities = 81/169 (47%), Positives = 109/169 (64%), Gaps = 1/169 (0%)
Frame = +2
Query: 59 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 235
F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+
Sbjct: 82 FKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQ 141
Query: 236 AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTS 415
+ ++RDCD D C CSV L +C DE + V ++DL S ++ D
Sbjct: 142 DVEYTRDCDCED---HCARCSVTLTLHARCTGDEIMPVYARDLVVSGERA--NEWVGDPV 196
Query: 416 SDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
KG +I KLRRGQEL++ +A+KGI K+HAKW+P A V F Y+P
Sbjct: 197 ITDPEGKGPLICKLRRGQELKMTCVAKKGIAKEHAKWAPTAAVGFEYDP 245
[131][TOP]
>UniRef100_B2W6Y7 DNA-directed RNA polymerase subunit D n=1 Tax=Pyrenophora
tritici-repentis Pt-1C-BFP RepID=B2W6Y7_PYRTR
Length = 334
Score = 150 bits (380), Expect = 6e-35
Identities = 79/180 (43%), Positives = 112/180 (62%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
V+ E A F +++ + AN+LRRVM+SE+PT+AID+VE+ N+SVL DEF+ HRL
Sbjct: 12 VRFLEANSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRL 71
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHT 382
GL+PL+S+ + +SRDCD +G C+ C+V L KC E + V ++DL T
Sbjct: 72 GLVPLSSKGVDDLIYSRDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVYARDLVIESRT 128
Query: 383 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
P D + G IVKLRRGQ + +R IA+KGI K+HAKW+P+A + F Y+P
Sbjct: 129 --PNDEVGKPVITDSEGTGSCIVKLRRGQAINMRCIAKKGIAKEHAKWAPSAAIGFEYDP 186
[132][TOP]
>UniRef100_C4JV60 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JV60_UNCRE
Length = 345
Score = 150 bits (379), Expect = 8e-35
Identities = 83/187 (44%), Positives = 117/187 (62%), Gaps = 5/187 (2%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +R+++ F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVRDVETHRVDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLGLIPL S+ + M ++RDCD +G C C + L KC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARDCDC---EGGCSRCIITLQLHAKCTGEGVMVVYARDL--- 126
Query: 374 DHTVVPVDFSPDTSSDSAVN----KGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
VV D + + + +N KG II KLRR QE+++ +KGI K+HAKW+P A
Sbjct: 127 ---VVIGDRANEWVGNPVINDPAGKGPIICKLRRDQEVKMTCTVKKGIAKEHAKWAPTAA 183
Query: 542 VSFMYEP 562
+ F Y+P
Sbjct: 184 IGFEYDP 190
[133][TOP]
>UniRef100_C5DWL5 ZYRO0D15796p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DWL5_ZYGRC
Length = 308
Score = 149 bits (377), Expect = 1e-34
Identities = 83/182 (45%), Positives = 116/182 (63%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+VKIRE + F L + ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFIAH
Sbjct: 6 PQVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAH 65
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGLIPL S + + RDC D C+ CSV L+ ++ T +V +KDL
Sbjct: 66 RLGLIPLQSTDIEQLEYCRDCFCED---HCDKCSVVLTLQAIGESESTTNVYAKDLVIVS 122
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
+ ++ + D N G++I KLR+GQEL L+ +A+KGI K+HAKW P+A + F Y
Sbjct: 123 N-LMGRNLGHPIIQDKEGN-GVLICKLRKGQELTLKCVAKKGIAKEHAKWGPSAAIEFEY 180
Query: 557 EP 562
+P
Sbjct: 181 DP 182
[134][TOP]
>UniRef100_B6QC30 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC30_PENMQ
Length = 370
Score = 149 bits (376), Expect = 2e-34
Identities = 84/175 (48%), Positives = 112/175 (64%), Gaps = 7/175 (4%)
Frame = +2
Query: 59 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 235
F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SVL DEF+AHRLGLIPL S+
Sbjct: 44 FKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDN 103
Query: 236 AMRFSRDCDACDGDGQCEFCSVEFHLRVKC-MTDETLDVTSKDLY-----SSDHTVVPVD 397
M ++RDC + C CSV L +C D+ + V S+DL +++ PV
Sbjct: 104 DMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDLVVTGDRANEWVGNPVI 160
Query: 398 FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
P+ KG +I KL +GQEL+L IARKGI K+HAKWSP + V F Y+P
Sbjct: 161 TDPE-------GKGPLIAKLIKGQELKLTCIARKGIAKEHAKWSPTSAVGFEYDP 208
[135][TOP]
>UniRef100_C5FPK3 RNA polymerase II subunit 3 n=1 Tax=Microsporum canis CBS 113480
RepID=C5FPK3_NANOT
Length = 359
Score = 149 bits (375), Expect = 2e-34
Identities = 80/174 (45%), Positives = 110/174 (63%), Gaps = 6/174 (3%)
Frame = +2
Query: 59 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 235
F L D + AN+ RR +++E+PT+AID+VEIEVN+SVL DEFI+HRLGLIPL S+
Sbjct: 37 FRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDT 96
Query: 236 AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY-----SSDHTVVPVDF 400
M +SRDCD +G C+ C + L KC ++E + V ++DL +++ PV
Sbjct: 97 DMLYSRDCDC---EGGCQRCVINLSLHAKCTSEEIMKVYARDLVVVGDRANEWVGNPVLT 153
Query: 401 SPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
P+ KG II KLRRGQE++ I +KGI K+HAKW+P A V F Y+P
Sbjct: 154 DPE-------GKGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPTAAVGFEYDP 200
[136][TOP]
>UniRef100_A6RAE4 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus
NAm1 RepID=A6RAE4_AJECN
Length = 576
Score = 148 bits (374), Expect = 3e-34
Identities = 80/173 (46%), Positives = 112/173 (64%), Gaps = 5/173 (2%)
Frame = +2
Query: 59 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA 238
F L D + AN+LRR +++E+PT+AID+VEIE N+SVL DEFI+HRLGLIPL S+ A
Sbjct: 50 FRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDA 109
Query: 239 -MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTS 415
M +SRDCD +G C C V L+ +C ++ + V ++DL V+ D + +
Sbjct: 110 DMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL------VIVGDRANEWV 160
Query: 416 SD----SAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
+ A KG +I KLRRGQE+++ IA+KGI K+HAKW+P A V F Y+P
Sbjct: 161 GNPVIMDAEGKGPVICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVGFEYDP 213
[137][TOP]
>UniRef100_A4R7L3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4R7L3_MAGGR
Length = 330
Score = 147 bits (371), Expect = 7e-34
Identities = 80/188 (42%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
VKI FEL + D S+AN++RRVM++E+PT+AID EI+ N+SVL DEFIAHRL
Sbjct: 17 VKIFHADSVHVNFELSNVDLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRL 76
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDE---TLDVTSKDLYSS 373
GL+PL++ A + ++RDCD + CE CSV + KC +++ + V ++D+
Sbjct: 77 GLVPLSARGASELVYARDCDC---EQYCENCSVIITIHAKCESEDPNYVMKVYARDMVVD 133
Query: 374 DHTV-----VPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
V PV PD G+I+ KLRR QE+ +R +A+KGI K+HAKW PA
Sbjct: 134 GRRVNQSVGTPVITDPD-------GLGVILFKLRRNQEVHIRCVAKKGIAKEHAKWCPAT 186
Query: 539 TVSFMYEP 562
+ F Y+P
Sbjct: 187 AIGFEYDP 194
[138][TOP]
>UniRef100_UPI000155CFD6 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C n=1 Tax=Ornithorhynchus anatinus
RepID=UPI000155CFD6
Length = 352
Score = 146 bits (369), Expect = 1e-33
Identities = 82/157 (52%), Positives = 108/157 (68%), Gaps = 3/157 (1%)
Frame = +2
Query: 104 RVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCDACDGDG 280
R I P ++ID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++SRDC +
Sbjct: 113 RSPIQAPPILSIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTC---EE 169
Query: 281 QCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF-SPDTSSDSAVNKG-IIIVK 454
C CSVEF L V+C D+T VTS+DL S+ V+PV S D + V + I+IVK
Sbjct: 170 FCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRSRDNDPNDYVEQDDILIVK 229
Query: 455 LRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPE 565
LR+GQELRLRA A+KG GK+H KW+P A V+F Y+P+
Sbjct: 230 LRKGQELRLRAYAKKGFGKEHTKWNPTAGVAFEYDPD 266
[139][TOP]
>UniRef100_UPI0000E242AB PREDICTED: similar to RNA polymerase II subunit hRPB33 isoform 2
n=1 Tax=Pan troglodytes RepID=UPI0000E242AB
Length = 242
Score = 143 bits (361), Expect = 1e-32
Identities = 78/148 (52%), Positives = 103/148 (69%), Gaps = 3/148 (2%)
Frame = +2
Query: 131 IAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEF 307
+AID V+I+ NSSVL+DEFIAHRLGLIPL S+ + +++SRDC + C CSVEF
Sbjct: 12 LAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEF 68
Query: 308 HLRVKCMTDETLDVTSKDLYSSDHTVVPVDFS--PDTSSDSAVNKGIIIVKLRRGQELRL 481
L V+C D+T VTS+DL S+ V+PV + +D I+IVKLR+GQELRL
Sbjct: 69 TLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRL 128
Query: 482 RAIARKGIGKDHAKWSPAATVSFMYEPE 565
RA A+KG GK+HAKW+P A V+F Y+P+
Sbjct: 129 RAYAKKGFGKEHAKWNPTAGVAFEYDPD 156
[140][TOP]
>UniRef100_Q0UL31 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UL31_PHANO
Length = 335
Score = 142 bits (359), Expect = 2e-32
Identities = 77/181 (42%), Positives = 112/181 (61%), Gaps = 1/181 (0%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
V+ E A F +++ + AN+LRRVM++E+PT+AID+VE+ N+SVL DEF+ HRL
Sbjct: 12 VRFLEANSQRANFIVQNFNLETANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHRL 71
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHT 382
GLIPL+S + ++RDCD +G C+ C+V L KC E + V ++DL +
Sbjct: 72 GLIPLSSRGVDDLLYARDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVFARDLVIESNR 128
Query: 383 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT-VSFMYE 559
P D + G IVKLRRGQ + +R IA+KGI K+HAKW+P+A+ + F Y+
Sbjct: 129 --PNDEVGRPVITDSEGTGSCIVKLRRGQAINMRCIAKKGIAKEHAKWAPSASAIGFEYD 186
Query: 560 P 562
P
Sbjct: 187 P 187
[141][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5LCN7_9ALVE
Length = 336
Score = 142 bits (358), Expect = 2e-32
Identities = 83/197 (42%), Positives = 115/197 (58%), Gaps = 9/197 (4%)
Frame = +2
Query: 14 MPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 193
MP +++ L D+ +F + + + +IANALRR+MI+EVPT+AID V IE NSS L DEF+A
Sbjct: 12 MPVIEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVA 71
Query: 194 HRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
HRLGL+P+ S+ + +DC C C+V++ L V DVT D+
Sbjct: 72 HRLGLLPINSKEVDSYSDPKDCQCY---SSCPNCTVKYTLDVIAEDHGVTDVTHLDIQPV 128
Query: 374 DH-TVVPVDFSP------DTSSDSAVNK--GIIIVKLRRGQELRLRAIARKGIGKDHAKW 526
D T +P P D + N+ GI+I KLRR Q+L + ARKG+GK HAKW
Sbjct: 129 DQGTSIPESRRPLPVPLWDRTKTEEENRRNGIVIAKLRRNQQLTMHMEARKGVGKMHAKW 188
Query: 527 SPAATVSFMYEPEIHIN 577
+P TV+ YEP I I+
Sbjct: 189 NPTGTVAIRYEPVITID 205
[142][TOP]
>UniRef100_B6GWS8 Pc12g07350 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GWS8_PENCW
Length = 335
Score = 142 bits (358), Expect = 2e-32
Identities = 78/183 (42%), Positives = 112/183 (61%), Gaps = 1/183 (0%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+V +RE + F L D + AN+LRR +++EVPT+A+DL+EIE N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71
Query: 197 RLGLIPLTSERA-MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
RLG+IPL S + ++RDCD D C CSV L +C + + V ++DL
Sbjct: 72 RLGMIPLNSYNCDQDLDYTRDCDCED---HCVRCSVTLSLHARCGSG-IMSVYARDLIVV 127
Query: 374 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFM 553
+ P T+ NKG +I KLR+GQE+++ +A+KG K+HAKW+P A V F
Sbjct: 128 GERINDKIGDPVTTDPE--NKGPLICKLRKGQEVKMTCLAKKGTAKEHAKWAPTAAVGFE 185
Query: 554 YEP 562
Y+P
Sbjct: 186 YDP 188
[143][TOP]
>UniRef100_Q8SRR5 DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN n=1 Tax=Encephalitozoon
cuniculi RepID=Q8SRR5_ENCCU
Length = 240
Score = 140 bits (353), Expect = 8e-32
Identities = 77/184 (41%), Positives = 107/184 (58%)
Frame = +2
Query: 14 MPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 193
M + + EL + RF L +T ANALRR++ISEVPTIAID+VEIE N++VL DE +A
Sbjct: 1 MVALTVEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLA 60
Query: 194 HRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
HRLGLIP+ S+R + + + C G C CSV F + V D V+++D+
Sbjct: 61 HRLGLIPIYSKRELKYK-----EECSCSGFCSECSVVFEIDVVHTDDTLRTVSTRDIVCD 115
Query: 374 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFM 553
+ V+ + G +I KL R Q L+ R I RKG+GK HAKWSP + +SF
Sbjct: 116 EEDVI-------------IKSGPVITKLARDQGLKARCIGRKGVGKTHAKWSPVSAISFE 162
Query: 554 YEPE 565
Y+ +
Sbjct: 163 YDKD 166
[144][TOP]
>UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2
Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG
Length = 337
Score = 139 bits (349), Expect = 2e-31
Identities = 77/181 (42%), Positives = 112/181 (61%), Gaps = 1/181 (0%)
Frame = +2
Query: 59 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA 238
F+L + D S AN LRRV+++EVP + ++ V I N+SVL DE IAHR+GL+PL S+RA
Sbjct: 21 FKLNEVDNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLYSKRAKQ 80
Query: 239 MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDE-TLDVTSKDLYSSDHTVVPVDFSPDTS 415
M+F DC C G G C C + L+V+C +++ +L V + L D V PV
Sbjct: 81 MQFFHDC-LCGGTG-CIECQITGELKVRCPSNQHSLQVFADSLKIDDEGVYPV------- 131
Query: 416 SDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHINDDLMET 595
S+ +G+ ++ L R QE+ LR + RK I K HAK+ P +TVS YEPE+ +N D++ +
Sbjct: 132 --SSEERGVWLLTLGRSQEINLRVLIRKSIAKTHAKFMPVSTVSMRYEPEVILNKDVISS 189
Query: 596 L 598
L
Sbjct: 190 L 190
[145][TOP]
>UniRef100_B3L2P7 Dna-directed rna polymerase II, putative n=1 Tax=Plasmodium
knowlesi strain H RepID=B3L2P7_PLAKH
Length = 334
Score = 138 bits (348), Expect = 3e-31
Identities = 78/201 (38%), Positives = 119/201 (59%), Gaps = 3/201 (1%)
Frame = +2
Query: 8 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 187
A+ V+I +L D F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF
Sbjct: 10 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 69
Query: 188 IAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY 367
+AHRLGLIP+ S F C + C C++++ ++VKC +DVT D+
Sbjct: 70 LAHRLGLIPIDSRNVKNFEFREKCKCKE---TCSKCTIQYLIQVKCNNVSKIDVTHYDIE 126
Query: 368 SSDH---TVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
S +H +PV F D ++ A + I IV L + Q L ++ IA KGIGK HAKW P A
Sbjct: 127 SVEHEPNVPMPVPFE-DRNNKMAQSNAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-A 184
Query: 539 TVSFMYEPEIHINDDLMETLT 601
VS+ + ++ I L+ +L+
Sbjct: 185 NVSYRIDHKVSIKHHLINSLS 205
[146][TOP]
>UniRef100_C4V9J5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4V9J5_NOSCE
Length = 233
Score = 137 bits (345), Expect = 7e-31
Identities = 78/180 (43%), Positives = 105/180 (58%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
++ I E D++ +F LRDT S ANALRR++ISEVPT+ IDLVEIE+N++ L DE I+HR
Sbjct: 2 KILIEESTDNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHR 61
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH 379
LGL+PL +++ + R D C D C+ CSV L V TD + VT KDL S D
Sbjct: 62 LGLVPLYTKKDLVFR-----DDCACDDICDKCSVSLTLNVSNNTDMPMVVTCKDLKSQD- 115
Query: 380 TVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYE 559
D + +I KL Q L++ A KG+GK H+KWSP + V F Y+
Sbjct: 116 -------------DVVIRSSPVICKLGTRQNLKVICKAFKGVGKIHSKWSPVSVVGFEYD 162
[147][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
strain Friedlin RepID=Q4FY45_LEIMA
Length = 337
Score = 137 bits (344), Expect = 9e-31
Identities = 81/192 (42%), Positives = 111/192 (57%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
VK + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRL
Sbjct: 9 VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHT 382
GL+PL SE+A + F +DC C G G C C + L+V+C ++ SK ++ D
Sbjct: 69 GLVPLFSEKAKRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDSL 122
Query: 383 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
+ + SA GI +V L R Q L L + RK I K HAK+ P ATV+ Y P
Sbjct: 123 QID---DAEVYPVSAEEHGIWLVTLGRSQVLDLHVVIRKNIAKTHAKFMPVATVAMRYAP 179
Query: 563 EIHINDDLMETL 598
EI +N + +TL
Sbjct: 180 EIILNPNGFQTL 191
[148][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
infantum RepID=A4I451_LEIIN
Length = 337
Score = 137 bits (344), Expect = 9e-31
Identities = 81/192 (42%), Positives = 111/192 (57%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
VK + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRL
Sbjct: 9 VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHT 382
GL+PL SE+A + F +DC C G G C C + L+V+C ++ SK ++ D
Sbjct: 69 GLVPLFSEKAKRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDSL 122
Query: 383 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
+ + SA GI +V L R Q L L + RK I K HAK+ P ATV+ Y P
Sbjct: 123 QID---DAEVYPVSAEEHGIWLVTLGRSQVLDLHVVIRKNIAKTHAKFMPVATVAMRYAP 179
Query: 563 EIHINDDLMETL 598
EI +N + +TL
Sbjct: 180 EIILNPNGFQTL 191
[149][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N9T5_THEPA
Length = 354
Score = 136 bits (343), Expect = 1e-30
Identities = 78/207 (37%), Positives = 122/207 (58%), Gaps = 9/207 (4%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P ++I +L+ D F L ++D S ANA+RRV++SE+P++AI++V + N+SVL+DE+I+H
Sbjct: 10 PSIEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISH 69
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGL+P+ S A F C D +C C+V++ L V C ++ VT D+ D
Sbjct: 70 RLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCKDSDSRVVTHFDIVPDD 126
Query: 377 ---------HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 529
+ +P+ + T+ + A + GI IVKL+RG + ++ A KG+GK HAKW
Sbjct: 127 THSKSIYGKNLPMPIPRADVTNFNGATD-GIPIVKLKRGHSINMKLTASKGLGKFHAKWI 185
Query: 530 PAATVSFMYEPEIHINDDLMETLTLKE 610
A V++ EP N LME L+ +E
Sbjct: 186 -VANVNYKMEPRFSFNSSLMEQLSSEE 211
[150][TOP]
>UniRef100_Q8I2S6 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8I2S6_PLAF7
Length = 335
Score = 135 bits (339), Expect = 3e-30
Identities = 76/195 (38%), Positives = 116/195 (59%), Gaps = 1/195 (0%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
++ I +L D F L ++++ IANALRR+M+SE+PT+AID+V + N+S +DEFIAHR
Sbjct: 12 QINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFIAHR 71
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH 379
LGLIP+ S F C + C C++++ + VKC +DV+ D+ S +H
Sbjct: 72 LGLIPIDSRNVNNYEFREKCKCKE---TCSKCTIQYIIEVKCNHSNKIDVSHYDIESLEH 128
Query: 380 TV-VPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
VP+ P + +S I IV L + Q L ++ IA KGIGK HAKW P A VS+
Sbjct: 129 EPNVPMPI-PHGNKNSVSENAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-ANVSYRI 186
Query: 557 EPEIHINDDLMETLT 601
+ ++ I +L++ L+
Sbjct: 187 DHKVLIKHNLIDKLS 201
[151][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
RepID=Q4UFZ3_THEAN
Length = 354
Score = 135 bits (339), Expect = 3e-30
Identities = 78/207 (37%), Positives = 121/207 (58%), Gaps = 9/207 (4%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P +++ +L+ D F L ++D S ANA+RRV++SE+P++AI++V + N+SVL+DE+I+H
Sbjct: 10 PSIEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISH 69
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGL+P+ S A F C D +C C+V++ L V C + VT D+ D
Sbjct: 70 RLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCNDSNSRLVTHFDIVPDD 126
Query: 377 ---------HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 529
+ +P+ + T+ + A + GI IVKL+RGQ + ++ A KG+GK HAKW
Sbjct: 127 THSKSIYGKNLPMPIPRADVTNFNGATD-GIPIVKLKRGQSINMKLTASKGLGKFHAKWI 185
Query: 530 PAATVSFMYEPEIHINDDLMETLTLKE 610
A V++ EP N LME L+ E
Sbjct: 186 -VANVNYKMEPRFSFNSALMEQLSSDE 211
[152][TOP]
>UniRef100_UPI000194E98D PREDICTED: hypothetical protein, partial n=1 Tax=Taeniopygia
guttata RepID=UPI000194E98D
Length = 129
Score = 134 bits (338), Expect = 4e-30
Identities = 71/130 (54%), Positives = 94/130 (72%), Gaps = 1/130 (0%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVP 391
L S++ V+P
Sbjct: 120 LISNNPRVIP 129
[153][TOP]
>UniRef100_A5K6U4 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium vivax
RepID=A5K6U4_PLAVI
Length = 333
Score = 134 bits (337), Expect = 6e-30
Identities = 75/201 (37%), Positives = 118/201 (58%), Gaps = 3/201 (1%)
Frame = +2
Query: 8 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 187
A+ V+I +L D F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF
Sbjct: 9 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 68
Query: 188 IAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY 367
+AHRLGLIP+ S F C + C C++++ ++VKC +++T D+
Sbjct: 69 LAHRLGLIPIDSTNVKNFEFREKCKCKE---TCSKCTIQYLIQVKCNNVSKIEITHHDIE 125
Query: 368 SSDH---TVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
S +H +PV D ++ A + I IV L + Q L ++ IA KGIGK HAKW P A
Sbjct: 126 SVEHEPNVPMPVPLE-DRNNQMAESNAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-A 183
Query: 539 TVSFMYEPEIHINDDLMETLT 601
VS+ + ++ I L+ +L+
Sbjct: 184 NVSYRIDHKVAIKHHLINSLS 204
[154][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
RepID=CNJC_TETTH
Length = 310
Score = 134 bits (336), Expect = 8e-30
Identities = 81/205 (39%), Positives = 122/205 (59%), Gaps = 8/205 (3%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
++ + L++ F L + D S+AN+LRR++++E+ TIAI V++ N+S L DE+IAHR
Sbjct: 5 KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHR 64
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL-YSSD 376
LGLIPL S + + +C+ G+C+ C++ F LRV T+E L+VTS DL D
Sbjct: 65 LGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQD 121
Query: 377 HT----VVPVDFSPDTSSDSAVNK---GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
HT V P+ D NK GI I+KL +GQ++ A+KGIGK H+KW+P
Sbjct: 122 HTDEDAVRPIKVY-SILRDEYGNKREVGIPIIKLSKGQQIHFECEAQKGIGKMHSKWNPV 180
Query: 536 ATVSFMYEPEIHINDDLMETLTLKE 610
+F EPEI I D ++ L +++
Sbjct: 181 CISTFSVEPEI-IFDQEIQNLDIEQ 204
[155][TOP]
>UniRef100_A9BL73 Rpb3 n=1 Tax=Cryptophyta RepID=A9BL73_9CRYP
Length = 307
Score = 132 bits (333), Expect = 2e-29
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 9/191 (4%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P ++I L + ++ L++T+ SI N+LRRVMI+EVPT AIDL+ IE+NSSV++DEF++H
Sbjct: 4 PSLEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSH 63
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC--------MTD-ETLDV 349
RLGL+PL S A R++R+CD + C CS +F L + TD T+D
Sbjct: 64 RLGLLPLFSNFAHEFRYTRECDC---EQYCSKCSFKFSLDIYAEKFPQSIFSTDLNTIDK 120
Query: 350 TSKDLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 529
Y + P+ +S + ++ K I+I KL GQ ++L AIA+KGIGK+HAKWS
Sbjct: 121 KENFFYQQ---INPIHYS--SLKETLDQKPILIGKLGIGQRIKLVAIAKKGIGKEHAKWS 175
Query: 530 PAATVSFMYEP 562
P + + P
Sbjct: 176 PISVIKIKKIP 186
[156][TOP]
>UniRef100_A4HH22 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
braziliensis RepID=A4HH22_LEIBR
Length = 337
Score = 132 bits (333), Expect = 2e-29
Identities = 78/180 (43%), Positives = 107/180 (59%)
Frame = +2
Query: 59 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA 238
F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A
Sbjct: 21 FQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKR 80
Query: 239 MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSS 418
+ F +DC C G G C C + L+V+C ++ SK ++ D + S +
Sbjct: 81 LNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDSLQID---SAEVYP 131
Query: 419 DSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHINDDLMETL 598
SA GI +V L R Q L L + RK I K HAK+ P ATV+ Y EI +N + + L
Sbjct: 132 VSAEEHGIWLVTLGRSQVLDLNVLIRKNIAKTHAKFMPVATVAMRYAAEILLNPNGFQAL 191
[157][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
Length = 363
Score = 131 bits (329), Expect = 5e-29
Identities = 80/195 (41%), Positives = 111/195 (56%), Gaps = 7/195 (3%)
Frame = +2
Query: 20 RVKIRELKD------DMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
+VKI + K + F+L + D S AN LRRVM++EVP + I+ V I N+SVL D
Sbjct: 28 KVKILDCKKHEHSAGETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPD 87
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDE-TLDVTSK 358
E IAHR+GL+PL S +A M+++RDC C G G C C + L+V C +++ +L V
Sbjct: 88 EMIAHRIGLVPLYSMKARRMQYARDC-LCGGSG-CGECQINGELKVSCPSNKHSLQVFMD 145
Query: 359 DLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
L D V PV S+ G+ ++ L R QEL LR + RK I K HAK+ P A
Sbjct: 146 SLKIDDEEVYPV---------SSEEHGVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPVA 196
Query: 539 TVSFMYEPEIHINDD 583
TV+ Y +I +N D
Sbjct: 197 TVAMRYASDIVLNPD 211
[158][TOP]
>UniRef100_Q9AW23 DNA-directed RNA polymerase II n=1 Tax=Guillardia theta
RepID=Q9AW23_GUITH
Length = 299
Score = 130 bits (327), Expect = 8e-29
Identities = 71/187 (37%), Positives = 111/187 (59%), Gaps = 2/187 (1%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+K+ ++ D + + AN++RR+M++E+PT+AID V IE N+S DEFIAHRL
Sbjct: 1 MKVEKISDFEIKINFNNFPIVYANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRL 60
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHT 382
GLIP+ SE A +++SR+CD + +CE CS+ F L V E +S S+
Sbjct: 61 GLIPIFSENADLIKYSRECDC---ENECEKCSILFTLDVHANETEKTITSSMVKCSTACY 117
Query: 383 VVPVDFSPDTSSDSA--VNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
+ F + S +S + III KL GQ ++L+A +KGIGK+H+KW+P +++ F +
Sbjct: 118 PLKTFFIINNSGNSRNYDDYAIIIAKLNPGQNIKLKAYVKKGIGKEHSKWNPISSIKFRF 177
Query: 557 EPEIHIN 577
P +N
Sbjct: 178 YPIYQVN 184
[159][TOP]
>UniRef100_Q4Z7P9 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium berghei
RepID=Q4Z7P9_PLABE
Length = 331
Score = 130 bits (327), Expect = 8e-29
Identities = 70/197 (35%), Positives = 120/197 (60%), Gaps = 3/197 (1%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
+++I+ + + F L +++A++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR
Sbjct: 10 KIEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 69
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH 379
+GLIP+ S + F C + C C+V++ + VKC ++V+ D+ + DH
Sbjct: 70 IGLIPIDSRNIKSYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKINVSHYDIEALDH 126
Query: 380 TV-VPVDFSPDTSSDS--AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSF 550
+P+ D +++ + I IV L + Q + ++ A KGIGK HAKW P A VS+
Sbjct: 127 EPNIPMPIPNDNKNNNIEKMENAIPIVTLSKNQTIHMKLTATKGIGKMHAKWIP-ANVSY 185
Query: 551 MYEPEIHINDDLMETLT 601
+ + +I IN+ ++ ++
Sbjct: 186 IIDHKIVINNHEVDKMS 202
[160][TOP]
>UniRef100_B7Z377 cDNA FLJ57937, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z377_HUMAN
Length = 155
Score = 130 bits (326), Expect = 1e-28
Identities = 69/131 (52%), Positives = 93/131 (70%), Gaps = 1/131 (0%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 185 FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D+T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTF---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 362 LYSSDHTVVPV 394
L S+ V+PV
Sbjct: 120 LISNSPRVIPV 130
[161][TOP]
>UniRef100_Q6IP84 MGC78824 protein n=1 Tax=Xenopus laevis RepID=Q6IP84_XENLA
Length = 347
Score = 128 bits (321), Expect = 4e-28
Identities = 75/196 (38%), Positives = 114/196 (58%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
R+ I +++DD+ F++ DASIANA RR+++SEVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RIDIVKMEDDILEFDMVGIDASIANAFRRILLSEVPTVAVEKVYVYNNTSIIQDEILAHR 109
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD------ 361
LGLIP+ ++ + S D D +G E +++F L VKC + D
Sbjct: 110 LGLIPIRADPRLFEYRSAD----DAEG-TEIDTLQFELNVKCTRNPRASKDCSDPNELYL 164
Query: 362 ---LYSSDHTVVP----VDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+Y+ +P VD P+T V+K I+I +LR GQE+ + KGIGKDHA
Sbjct: 165 NHKVYTGHMKWLPQGNQVDLFPETDPPRPVHKDILIAQLRPGQEINVIMHCVKGIGKDHA 224
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ PE+
Sbjct: 225 KFSPVATASYRLLPEV 240
[162][TOP]
>UniRef100_Q7RLX3 Conjugation stage-specific protein, putative n=1 Tax=Plasmodium
yoelii yoelii RepID=Q7RLX3_PLAYO
Length = 335
Score = 128 bits (321), Expect = 4e-28
Identities = 69/196 (35%), Positives = 118/196 (60%), Gaps = 3/196 (1%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
++I+ + + F L ++++++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR+
Sbjct: 15 IEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 74
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHT 382
GLIP+ S F C + C C+V++ + VKC +DV+ D+ + DH
Sbjct: 75 GLIPIDSRNIKNYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHE 131
Query: 383 V-VPVDFSPDTSSDS--AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFM 553
+P+ D +++ + I I+ L + Q + ++ A KGIGK HAKW P A VS++
Sbjct: 132 PNIPMPIPNDNKNNNIEKMENAIPILTLSKNQTIHMKLTATKGIGKMHAKWIP-ANVSYI 190
Query: 554 YEPEIHINDDLMETLT 601
+ +I IN+ ++ ++
Sbjct: 191 IDHKIIINNHEVDKMS 206
[163][TOP]
>UniRef100_Q4XR41 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
chabaudi RepID=Q4XR41_PLACH
Length = 331
Score = 127 bits (320), Expect = 5e-28
Identities = 70/188 (37%), Positives = 113/188 (60%), Gaps = 3/188 (1%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
++I+ + + F L +++ ++ANALRR+M+SEVPT+A+D+V + N+S +DEFIAHR+
Sbjct: 11 IEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRI 70
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHT 382
GLIP+ S + F C + C C+V++ + VKC +DV+ D+ + DH
Sbjct: 71 GLIPIDSRNIKSYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHE 127
Query: 383 V-VPVDFSPDTSSDS--AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFM 553
+P+ D ++ ++ I IV L + Q L ++ A KGIGK HAKW P A VS++
Sbjct: 128 PNIPMPIPNDNKHNNIDKMDTAIPIVTLSKNQTLHMKLTATKGIGKMHAKWIP-ANVSYI 186
Query: 554 YEPEIHIN 577
+ +I IN
Sbjct: 187 IDHKIVIN 194
[164][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
Length = 351
Score = 125 bits (315), Expect = 2e-27
Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 7/203 (3%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+KI EL D F+L DA++ANALRR+++ EVPT+AI+ V+I NS V+ DE +AHRL
Sbjct: 66 IKINELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRL 125
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCM---TDETLDVTSKDLYSS 373
GLIP + + + D D + + C F L V+C D+ +TSK +YS
Sbjct: 126 GLIPFNIDLDLIDFRAEDQDLNEKNSVC------FKLCVECNKYDIDDKNGITSKAIYSK 179
Query: 374 DHTVVPVDFSP----DTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
D VP+ S + S V I+I KLR GQ + KGIGK HAKWSP +T
Sbjct: 180 DLIWVPMSESQKQIFEKKPPSVVYPDILITKLRPGQVIEAILYCEKGIGKTHAKWSPVST 239
Query: 542 VSFMYEPEIHINDDLMETLTLKE 610
++ PE + + KE
Sbjct: 240 ATYRLLPEFKFPEGYITGKDAKE 262
[165][TOP]
>UniRef100_Q5CJZ9 DNA-directed RNA polymerase I n=1 Tax=Cryptosporidium hominis
RepID=Q5CJZ9_CRYHO
Length = 344
Score = 125 bits (314), Expect = 3e-27
Identities = 73/188 (38%), Positives = 102/188 (54%), Gaps = 7/188 (3%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+K+ ELK D F++ DASIANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDE---TLDVTSKDLYSS 373
GLIP+ + + D D + + C F L VKC D+ +TSK +YS
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170
Query: 374 DHTVVPVDFSP----DTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
D +P+ + S V I+I KLR GQ + K IG+ HAKWSP T
Sbjct: 171 DLVWIPLSDNQRKKFGKSPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHAKWSPVCT 230
Query: 542 VSFMYEPE 565
S+ PE
Sbjct: 231 ASYRLLPE 238
[166][TOP]
>UniRef100_UPI000180C3EB PREDICTED: similar to RNA polymerase 1-1 n=1 Tax=Ciona intestinalis
RepID=UPI000180C3EB
Length = 345
Score = 125 bits (313), Expect = 4e-27
Identities = 77/200 (38%), Positives = 116/200 (58%), Gaps = 9/200 (4%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+ + EL D +F++ DA+IANA RR++I+EVPT+AI+ V I N++V+ DE +AHRL
Sbjct: 48 INVIELGPDSMQFDMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRL 107
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTD-------ETLDVTSK- 358
GLIPLT++ + D D DG E ++EF L +KC + LDV K
Sbjct: 108 GLIPLTADAKLFEYRQGD----DADGTPE-DTLEFELNIKCTKNLSAPKDTTDLDVLYKH 162
Query: 359 -DLYSSDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
+YS D +P+ D + V I++ KLR G L ++ A KG+G+DHAK+SP
Sbjct: 163 HKVYSKDIKWIPLGNQKDLLTVKPVYDDILVAKLRPGHILDVKLHAVKGVGQDHAKFSPV 222
Query: 536 ATVSFMYEPEIHINDDLMET 595
AT S+ P+I + D ++ +
Sbjct: 223 ATASYRLLPQIRLLDQILNS 242
[167][TOP]
>UniRef100_Q5CPY6 RNA polymerase III C5 subunit n=1 Tax=Cryptosporidium parvum Iowa
II RepID=Q5CPY6_CRYPV
Length = 344
Score = 124 bits (311), Expect = 6e-27
Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 7/188 (3%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+K+ ELK D F++ DASIANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDE---TLDVTSKDLYSS 373
GLIP+ + + D D + + C F L VKC D+ +TSK +YS
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170
Query: 374 DHTVVPVDFSP----DTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
D +P+ + + V I+I KLR GQ + K IG+ HAKWSP T
Sbjct: 171 DLVWIPLSDNQRKKFGKTPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHAKWSPVCT 230
Query: 542 VSFMYEPE 565
S+ PE
Sbjct: 231 ASYRLLPE 238
[168][TOP]
>UniRef100_UPI0000E468FB PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E468FB
Length = 335
Score = 123 bits (308), Expect = 1e-26
Identities = 77/203 (37%), Positives = 115/203 (56%), Gaps = 13/203 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
R+ + L F++ D ++ANA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 35 RIDVISLTHSELEFDMVGVDPAVANAFRRILLAEVPTMAIEKVSIFNNTSIIQDEILAHR 94
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCM--TDETLDVTSKD-LY 367
LGLIP+ ++ R R D D ++EF L+VKC + + D T D LY
Sbjct: 95 LGLIPIKADPRIFEYREEGDETGTGED------TIEFQLKVKCTKNPNASKDATDPDELY 148
Query: 368 SSDHTV------VPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+ +P++ +T A VNK I+I KLR GQE+ L+ KGIGKDHA
Sbjct: 149 KNAKVTTEHFKWIPLENQEETYGPKAFAPVNKDILIAKLRPGQEIDLKMHCVKGIGKDHA 208
Query: 521 KWSPAATVSFMYEPEIHINDDLM 589
K+SP AT S+ PEI + +D++
Sbjct: 209 KFSPVATASYRLMPEIILTEDIV 231
[169][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
RepID=A7AWB4_BABBO
Length = 382
Score = 122 bits (305), Expect = 3e-26
Identities = 86/246 (34%), Positives = 120/246 (48%), Gaps = 48/246 (19%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P + I L F L + D + AN+LRR+M+SE+P++AI++V + N+SVL+DE+IAH
Sbjct: 10 PSIDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTSVLHDEYIAH 69
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL---- 364
RLGL+P+ S A + C D +C C+VE+ L VKCM D+T VT D+
Sbjct: 70 RLGLLPIESSSARNFEYRDKCTCSD---KCSRCTVEYSLDVKCM-DDTRVVTHYDINLDS 125
Query: 365 ------------------------------------YSSDHTVVPVDFSPDTSSDSAVNK 436
SS + +PD AV++
Sbjct: 126 WENSRGNVNAPMPVPRPSADALGNAPGDQGSDPQRVNSSGNATARNVQNPDGPHTGAVDR 185
Query: 437 --------GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHINDDLME 592
GI IVKL+RGQ L L+ A KG+GK HAKW A V++ EP I IN + E
Sbjct: 186 KSGSVPTGGIPIVKLKRGQCLSLKMTATKGLGKFHAKWM-VANVAYKMEPVITINRQVAE 244
Query: 593 TLTLKE 610
+ L E
Sbjct: 245 KMNLNE 250
[170][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
Length = 308
Score = 122 bits (305), Expect = 3e-26
Identities = 81/203 (39%), Positives = 116/203 (57%), Gaps = 6/203 (2%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
R++I EL D+ +F + D SIANA+RRVMI+EVP +AI V+I N+S L+DEF+A R
Sbjct: 13 RIEILELSDEKCKFSF-EGDLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL----- 364
LGLIPL S A + + + DA D Q V F LR K + D L++TS+ L
Sbjct: 72 LGLIPLVSYAADSKMYDWEADADSIDDQ--KTKVVFTLRQKNLNDAPLEITSQHLEPEFG 129
Query: 365 YSSDHTVVPVD-FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
+ + PV FSP + GI I +L + Q + +R A KG GK HAKW+P
Sbjct: 130 QVGEMAIRPVRMFSPINGKE----VGIPITRLGKNQSVHVRCHALKGFGKMHAKWTPINI 185
Query: 542 VSFMYEPEIHINDDLMETLTLKE 610
+F +E E++ + ++L+L E
Sbjct: 186 ATFRHEAELNFDHSQTQSLSLFE 208
[171][TOP]
>UniRef100_A7AQ72 DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein n=1 Tax=Babesia bovis
RepID=A7AQ72_BABBO
Length = 319
Score = 121 bits (304), Expect = 4e-26
Identities = 75/202 (37%), Positives = 117/202 (57%), Gaps = 6/202 (2%)
Frame = +2
Query: 23 VKIRELKDDM--ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
VKI+ LK+ A E+ + +IANA+RR++++EVPT+AI+ V I N+ V+ DE +AH
Sbjct: 34 VKIKFLKNTRYHAIAEIEGLNVAIANAIRRILLAEVPTLAIESVHIYQNTGVIQDEVLAH 93
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RLGL+P + + + + D D + C FHL+V+C + T+ +Y+ D
Sbjct: 94 RLGLVPFDCNPDL-IPYRDNEDLSDKNSVC------FHLKVECKKESLAGRTNLPVYAGD 146
Query: 377 HTVVPV-DFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 544
VP+ D + D+ ++K I++ KL GQE+ L+A KGIGK HAKWSP T
Sbjct: 147 MKWVPLSDEQAELFKDNPPKPIHKDILLTKLSPGQEIDLKAYLEKGIGKTHAKWSPVCTA 206
Query: 545 SFMYEPEIHINDDLMETLTLKE 610
+ ++P+I ++D E LT E
Sbjct: 207 VYRFKPDITFSED--EPLTNDE 226
[172][TOP]
>UniRef100_C1BKA8 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BKA8_OSMMO
Length = 351
Score = 121 bits (303), Expect = 5e-26
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 12/205 (5%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
R+ I E+ + F++ DA+IANA RR+M++EVPT+A++ V I N+S++ DE +AHR
Sbjct: 51 RIDIVEMDETTMEFDMVGIDAAIANAFRRIMLAEVPTMAVEKVYIYNNTSIIQDEILAHR 110
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD------ 361
LGLIP+ ++ + + + + +G E +++ L++KC + S D
Sbjct: 111 LGLIPIKADPRLFEYRNIGEEGGEEEG-TEIDTIQLQLKIKCTRNPRAPKDSSDPRELYL 169
Query: 362 ---LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+YS D VP+ D +D+ V+ I+I +LR GQEL + KGIGKDHAK
Sbjct: 170 NHMVYSKDMKWVPIGNQADVFADANIGPVHGDILIAQLRPGQELDVVMSCVKGIGKDHAK 229
Query: 524 WSPAATVSFMYEPEIHINDDLMETL 598
+SP AT S+ PEI LMET+
Sbjct: 230 FSPVATASYRLLPEI----TLMETV 250
[173][TOP]
>UniRef100_Q7SHT0 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Neurospora crassa RepID=Q7SHT0_NEUCR
Length = 378
Score = 121 bits (303), Expect = 5e-26
Identities = 74/192 (38%), Positives = 110/192 (57%), Gaps = 13/192 (6%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 232
A+F L DASIANA RR+MI+++PT+AI+ + + N+SV+ DE + HRLGLIP T +
Sbjct: 75 AQFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKE 134
Query: 233 MAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---LYSSDHTVV-PVDF 400
F + G+ C++ +VE L+VKC +E+ SKD LY + H + F
Sbjct: 135 GLHNFLKWYK--KGETPCDYNTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKF 192
Query: 401 SPD------TSSDSAV---NKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFM 553
P S ++A+ N I++ K+R GQE+ L KG+G DHAK+SP AT S+
Sbjct: 193 VPKGRQAKYFSGENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASYR 252
Query: 554 YEPEIHINDDLM 589
P I I + ++
Sbjct: 253 LMPTITILEPIL 264
[174][TOP]
>UniRef100_Q5KG24 RNA polymerase II subunit 3, putative n=1 Tax=Filobasidiella
neoformans RepID=Q5KG24_CRYNE
Length = 377
Score = 120 bits (301), Expect = 9e-26
Identities = 78/213 (36%), Positives = 112/213 (52%), Gaps = 31/213 (14%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
PR+ +R L + A F L + + AN+LRRVM+++VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 197 RLGLIPLTSER-AMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC----------MTDETL 343
RLGLIPL S + +R++RDCD +G C +C V L+V +T + L
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKVTFSGNDGEQFMRVTSDML 141
Query: 344 DVTSK--------------DLYSSDHTVVPVDFSPDTSSDSAVNKG------IIIVKLRR 463
+V +L D ++ + D + KG I+I K+ +
Sbjct: 142 EVVPSPGGPPPPNPYGPPPELSEEDRIIIN---NRDPEMGQPIGKGNPTVPPILIAKMGK 198
Query: 464 GQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
GQE+ + A KGI K HAKWSP +TV+F Y+P
Sbjct: 199 GQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
[175][TOP]
>UniRef100_Q55RL9 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q55RL9_CRYNE
Length = 377
Score = 120 bits (301), Expect = 9e-26
Identities = 78/213 (36%), Positives = 112/213 (52%), Gaps = 31/213 (14%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
PR+ +R L + A F L + + AN+LRRVM+++VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 197 RLGLIPLTSER-AMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC----------MTDETL 343
RLGLIPL S + +R++RDCD +G C +C V L+V +T + L
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKVTFSGNDGEQFMRVTSDML 141
Query: 344 DVTSK--------------DLYSSDHTVVPVDFSPDTSSDSAVNKG------IIIVKLRR 463
+V +L D ++ + D + KG I+I K+ +
Sbjct: 142 EVVPSPGGPPPPNPYGPPPELSEEDRIIIN---NRDPEMGQPIGKGNPTVPPILIAKMGK 198
Query: 464 GQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
GQE+ + A KGI K HAKWSP +TV+F Y+P
Sbjct: 199 GQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDP 231
[176][TOP]
>UniRef100_C9SI18 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Verticillium albo-atrum VaMs.102 RepID=C9SI18_9PEZI
Length = 375
Score = 120 bits (301), Expect = 9e-26
Identities = 78/208 (37%), Positives = 112/208 (53%), Gaps = 18/208 (8%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV+ +L + F L DASIANALRR++ISE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 54 RVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYIYNNTSVIQDEVLAHR 113
Query: 200 LGLIPLTSERAMAMRFSR----DCDACDGDGQCEFCSVEFHLRVKCM---------TDET 340
LGL+P T+ +A F R + D GD ++ +V+ LR++C D T
Sbjct: 114 LGLVPFTANKAGLRDFLRWRKKNPDGTPGD-IFDYNTVQLRLRIECTRNPDAAPGEIDST 172
Query: 341 LDVTSKDLYSSDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGI 505
+ +++SD VP F ++ N I++ KLR GQ L + KGI
Sbjct: 173 KAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNPDILLAKLRPGQVLEMDMHMHKGI 232
Query: 506 GKDHAKWSPAATVSFMYEPEIHINDDLM 589
G DHAK+SP AT S+ P I I ++
Sbjct: 233 GSDHAKFSPVATASYRLLPTITITRPIL 260
[177][TOP]
>UniRef100_O08521 Homologous to 40kD subunit of RNA-polymerase I and III (Fragment)
n=1 Tax=Cricetulus griseus RepID=O08521_CRIGR
Length = 347
Score = 120 bits (300), Expect = 1e-25
Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 12/197 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
+V I L + FE+ DASIANA RR++I+E+PT+A + V I N+S++ DE ++HR
Sbjct: 46 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 105
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD------ 361
+GL+P++++ M F + ++ +V F L KC ++ KD
Sbjct: 106 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 164
Query: 362 ---LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+YS D P + +D+ VN I++ KLR GQE+ L A A GIG+DHAK
Sbjct: 165 NSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAK 224
Query: 524 WSPAATVSFMYEPEIHI 574
+SP AT S+ P IHI
Sbjct: 225 FSPVATASYRLLPTIHI 241
[178][TOP]
>UniRef100_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
n=1 Tax=Trichomonas vaginalis G3 RepID=A2F4R6_TRIVA
Length = 322
Score = 120 bits (300), Expect = 1e-25
Identities = 77/213 (36%), Positives = 112/213 (52%), Gaps = 15/213 (7%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P++ + + F L + ANALRRVMI+EVPT+A+D VE N+S L DE+IAH
Sbjct: 13 PQIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAH 72
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGD--GQCEFCSVEFHLRVKC--MTDETLDVTSKDL 364
RL LIP SE A + C+ CDG G C C+V + + C +D ++VTS DL
Sbjct: 73 RLALIPFVSEDADKFFYHSQCN-CDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDL 131
Query: 365 -------YSSDHTV--VPVDFSPDT--SSDSAVNKGIIIVKLRRGQELRLRAIARKGIGK 511
++ T+ + + P T ++ + + + I KL GQ LRL A RKGIG+
Sbjct: 132 KLIAPHKWADKSTMGSIHIGVKPATLFANGDSNPQPVTITKLAPGQTLRLAAYIRKGIGR 191
Query: 512 DHAKWSPAATVSFMYEPEIHINDDLMETLTLKE 610
+HAKWSP ++ I + + + KE
Sbjct: 192 NHAKWSPVCVSTYHQVASIDFREAYKQIMDQKE 224
[179][TOP]
>UniRef100_O94616 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAC1_SCHPO
Length = 348
Score = 120 bits (300), Expect = 1e-25
Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 12/197 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
+V I L + FE+ DASIANA RR++I+E+PT+A + V I N+S++ DE ++HR
Sbjct: 47 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD------ 361
+GL+P++++ M F + ++ +V F L KC ++ KD
Sbjct: 107 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 165
Query: 362 ---LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+YS D P + +D+ VN I++ KLR GQE+ L A A GIG+DHAK
Sbjct: 166 NSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAK 225
Query: 524 WSPAATVSFMYEPEIHI 574
+SP AT S+ P IHI
Sbjct: 226 FSPVATASYRLLPTIHI 242
[180][TOP]
>UniRef100_Q2NFZ6 DNA-directed RNA polymerase subunit D n=1 Tax=Methanosphaera
stadtmanae DSM 3091 RepID=RPOD_METST
Length = 270
Score = 119 bits (299), Expect = 1e-25
Identities = 73/193 (37%), Positives = 107/193 (55%), Gaps = 1/193 (0%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
++IRE D+ A F + D + N +RR+ + E+PT+AI+ V I N + + DE +AHRL
Sbjct: 3 IEIREKDDERAVFVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHRL 62
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMT-DETLDVTSKDLYSSDH 379
GLIP+ ++ + S CD + C+ C V F L+ KC +++ V SKDL S D
Sbjct: 63 GLIPIVTDLDSYVMPSE----CDCESGCQHCRVSFLLKEKCEEGNDSKIVYSKDLKSDDP 118
Query: 380 TVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYE 559
V PV DT I IV+LR G+E+ L AIA G+G +HAKW T + Y
Sbjct: 119 AVKPV---YDT---------IPIVRLREGEEVELEAIAELGLGSEHAKWQATTTCGYKYY 166
Query: 560 PEIHINDDLMETL 598
P+I I+ + + L
Sbjct: 167 PKIEIDTEKVNDL 179
[181][TOP]
>UniRef100_UPI0000EDC949 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Ornithorhynchus anatinus RepID=UPI0000EDC949
Length = 346
Score = 119 bits (298), Expect = 2e-25
Identities = 73/196 (37%), Positives = 115/196 (58%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + ++++D F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVQMEEDSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIMQDEVLAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+T++ R R D + + D +++F L+VKC + + S D
Sbjct: 110 LGLIPITADPRLFEYRNQGDEEGTEID------TLQFQLKVKCTWNPSAAKDSSDPNQLY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+Y+ T VP+ D + A V+ I+I +LR GQEL L KG+GKDHA
Sbjct: 164 LNHKVYTKHMTWVPLGNQADLFPEGAIRPVHDDILITQLRPGQELDLLMHYVKGVGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP TVS+ P+I
Sbjct: 224 KFSPVDTVSYRLLPDI 239
[182][TOP]
>UniRef100_B6JXY4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6JXY4_SCHJY
Length = 349
Score = 119 bits (298), Expect = 2e-25
Identities = 75/196 (38%), Positives = 108/196 (55%), Gaps = 12/196 (6%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+KI L D F++ DASI NA RR++I+E+PT+AI+ V I N+S+L DE ++HRL
Sbjct: 48 IKITSLDDLNMTFDISGIDASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDEVLSHRL 107
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC---------MTDETLDVTS 355
GLIPL ++ M F R + ++ +V F L VKC TD +
Sbjct: 108 GLIPLKADPDMFKWFVRPGPGMEAT-HTDYDTVVFSLNVKCDFNKEAAPGETDPKKLYLN 166
Query: 356 KDLYSSDHTVVPVDFSPDTSSD---SAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 526
++ S + P + +D + VN I++ KLR GQE+ L A A GIG+DHAK+
Sbjct: 167 SEVLSGELVWKPQGRQAERFADNPLTVVNPNIVVAKLRPGQEIDLEAHAILGIGQDHAKF 226
Query: 527 SPAATVSFMYEPEIHI 574
SP +T S+ P IHI
Sbjct: 227 SPVSTASYRLLPAIHI 242
[183][TOP]
>UniRef100_B0W725 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Culex
quinquefasciatus RepID=B0W725_CULQU
Length = 335
Score = 118 bits (295), Expect = 4e-25
Identities = 68/202 (33%), Positives = 116/202 (57%), Gaps = 12/202 (5%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
+ R ++ + +++ F++ +IANA RR+M+SEVP++AI+ V I N+S++ DE
Sbjct: 40 FKRQLQIVVVRYEENELEFDMIGVSPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDE 99
Query: 185 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSK 358
+AHRLGLIPL ++ + + + DA + ++EF L+VKC ++ +VT+
Sbjct: 100 VLAHRLGLIPLKADPRLFEYKTNEGDAANAQD-----TLEFELKVKCTKKNKDSTEVTNN 154
Query: 359 DLYSSDHTV-------VPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIG 508
D +H++ VPV ++ ++ I+I ++R G E ++ A KG+G
Sbjct: 155 DSMYKNHSIYSGQIKWVPVGNQASIYKEADVGPIDDDILISRMRPGHEFDIKLFAVKGVG 214
Query: 509 KDHAKWSPAATVSFMYEPEIHI 574
KDHAK+SP AT S+ PEIH+
Sbjct: 215 KDHAKFSPVATASYRLLPEIHL 236
[184][TOP]
>UniRef100_B2A971 Predicted CDS Pa_1_8610 n=1 Tax=Podospora anserina
RepID=B2A971_PODAN
Length = 372
Score = 118 bits (295), Expect = 4e-25
Identities = 78/195 (40%), Positives = 105/195 (53%), Gaps = 16/195 (8%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 232
A F L DASIANA RR+MI++VPT+AI+ V + N+SV+ DE +AHRLGLIP T R
Sbjct: 64 ASFSLIGIDASIANAFRRIMIADVPTLAIENVFVWNNTSVIQDEVLAHRLGLIPFTGGRE 123
Query: 233 MAMRFSR-DCDACDGD-GQC-EFCSVEFHLRVKCMTDETLDVTSKD---------LYSSD 376
F + +GD +C +F +V L VKC +E D D +Y+ D
Sbjct: 124 GLTDFLKWYRKPANGDPAECKDFNTVALELNVKCEHNENADPNETDPTKLYHHAHVYAKD 183
Query: 377 HTVVP----VDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 544
P VD+ VN I+I KLR GQE+ ++ KG+G DHAK+SP AT
Sbjct: 184 IVFKPIGRQVDYFSGEDIIRPVNPDILIAKLRPGQEINVQMHMHKGVGSDHAKFSPVATA 243
Query: 545 SFMYEPEIHINDDLM 589
S+ P I I ++
Sbjct: 244 SYRIMPTITITQPIL 258
[185][TOP]
>UniRef100_UPI00004DA7E9 DNA-directed RNA polymerases I and III subunit RPAC1 (RNA
polymerases I and III subunit AC1) (DNA-directed RNA
polymerase I subunit C) (DNA- directed RNA polymerases I
and III 40 kDa polypeptide) (RPA40) (RPA39) (RPC40)
(AC40). n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI00004DA7E9
Length = 347
Score = 117 bits (293), Expect = 7e-25
Identities = 73/196 (37%), Positives = 110/196 (56%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
R+ I +++ D F++ DASIANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RIDIVKMEGDTLEFDMVGIDASIANAFRRILLAEVPTMAVEKVYVYNNTSIIQDEILAHR 109
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD------ 361
LGLIP+ + R A +G+G E +++F L VKC + D
Sbjct: 110 LGLIPIRVD----PRLFEYRSAEEGEG-TEIDTLQFELNVKCTRNPRASKDCSDPNELYL 164
Query: 362 ---LYSSDHTVVP----VDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+Y+S +P D P+T V+ I+I +LR GQE+ + KGIGKDHA
Sbjct: 165 NHKVYTSHMKWLPQGNQSDLFPETDPPRPVHGDILIAQLRPGQEISVIMHCVKGIGKDHA 224
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ PEI
Sbjct: 225 KFSPVATASYRLLPEI 240
[186][TOP]
>UniRef100_C1BYW4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Esox
lucius RepID=C1BYW4_ESOLU
Length = 263
Score = 117 bits (293), Expect = 7e-25
Identities = 72/195 (36%), Positives = 112/195 (57%), Gaps = 12/195 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
R+ + ++ + F++ DASIANA RR++++EVPT+A++ V I N+S++ DE +A R
Sbjct: 51 RIDVVQMDETCMEFDMVGIDASIANAFRRILLAEVPTMAVEKVFIYNNTSIIQDEVLAQR 110
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD------ 361
LGLIP+ ++ R +A D +G E +++ L++KC + S D
Sbjct: 111 LGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNHQATKDSADPQELYL 165
Query: 362 ---LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+YS D T VP+ D +D+ V+ I++ KLR GQEL + KGIG+DHAK
Sbjct: 166 NHMVYSKDMTWVPIGNQADVVADANIGPVHGDILLAKLRPGQELDIVMHCVKGIGQDHAK 225
Query: 524 WSPAATVSFMYEPEI 568
+SP AT S+ PEI
Sbjct: 226 FSPVATASYRLLPEI 240
[187][TOP]
>UniRef100_Q7PPN8 AGAP008771-PA (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7PPN8_ANOGA
Length = 261
Score = 117 bits (292), Expect = 1e-24
Identities = 70/204 (34%), Positives = 117/204 (57%), Gaps = 12/204 (5%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
S+ R ++ + ++ F++ +IAN RR+M+SEVP++AI+ V I N+S++ D
Sbjct: 1 SFKRKLQIVVVRYDENELEFDMIGVSCAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQD 60
Query: 182 EFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC--MTDETLDVTS 355
E +AHRLGLIPL ++ M + A + D ++EF L+VKC ++ +VT+
Sbjct: 61 EVLAHRLGLIPLRADPRMF-----EYKANETDPPSALDTLEFELKVKCTRKNKDSTEVTN 115
Query: 356 KDLYSSDHTV-------VPVDFSPDTSSDSAV---NKGIIIVKLRRGQELRLRAIARKGI 505
+ +H++ VP+ +++AV + I+I K+R G E ++ A KG+
Sbjct: 116 NENMYKNHSIYSGQIKWVPIGNQATIYTEAAVGPIDDDILISKMRPGHEFDIKLFAVKGV 175
Query: 506 GKDHAKWSPAATVSFMYEPEIHIN 577
GKDHAK+SP ATVS+ P+I +N
Sbjct: 176 GKDHAKFSPVATVSYRLLPDIKLN 199
[188][TOP]
>UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2
Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO
Length = 346
Score = 117 bits (292), Expect = 1e-24
Identities = 73/194 (37%), Positives = 107/194 (55%), Gaps = 6/194 (3%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+K + + FEL+ DA+I NALRR++ISEVPT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 61 LKFLSVSPERVVFELKGVDAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDEVLAHRL 120
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETL--DVTSKDLYSSD 376
GLIP + + + D + ++ L VKC T+++L TS +Y+
Sbjct: 121 GLIPFIVDPTALNYRQPNQEVTDEN------ALRVSLHVKC-TEQSLGPHQTSLPVYAKH 173
Query: 377 HTVVPVDFSPD----TSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 544
P+ S + AV+ I+I KLR GQE+ L+A KG+GK HAKWSP T
Sbjct: 174 IKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKWSPVCTA 233
Query: 545 SFMYEPEIHINDDL 586
+ EPEI + +
Sbjct: 234 VYRLEPEIVFKESI 247
[189][TOP]
>UniRef100_A8Q352 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
7966 RepID=A8Q352_MALGO
Length = 270
Score = 117 bits (292), Expect = 1e-24
Identities = 68/156 (43%), Positives = 90/156 (57%), Gaps = 16/156 (10%)
Frame = +2
Query: 143 LVEIEVNSSVLNDEFIAHRLGLIPLTS-ERAMAMRFSRDCDACDGDGQCEFCSVEFHLRV 319
+VEI +N++VL DEF+AHRLG+IPL S + A + R+C DG C+ CSVE L
Sbjct: 1 MVEITINTTVLPDEFLAHRLGMIPLLSMDTAKVLIDQRECSCEDG---CDRCSVELSLDA 57
Query: 320 KCMTDE-TLDVTSKDL---------YSSDHTVVPV-----DFSPDTSSDSAVNKGIIIVK 454
C +D + VTSKDL YS + PV DF D G++IV+
Sbjct: 58 LCTSDRGAMLVTSKDLIRSNTIANMYSDESVFGPVAPRHPDFGKPVGQDDPNANGVVIVQ 117
Query: 455 LRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
LR+GQ ++ R IARKG K+HAKWSP + V F Y+P
Sbjct: 118 LRKGQHIKARCIARKGFAKEHAKWSPVSAVGFEYDP 153
[190][TOP]
>UniRef100_B8D6F8 DNA-directed RNA polymerase subunit D n=1 Tax=Desulfurococcus
kamchatkensis 1221n RepID=B8D6F8_DESK1
Length = 280
Score = 117 bits (292), Expect = 1e-24
Identities = 76/189 (40%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+ I E + LRD + N+LRR ++SEVPT+A+D V I NSSV DE+I+HRL
Sbjct: 3 IDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRL 62
Query: 203 GLIPLTSERAM-AMRFSRDC-DACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
GLIPL S A+ + +C +A D + C V L + L V S+DL SSD
Sbjct: 63 GLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDLVSSD 122
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
VVP V I I+KL + Q +RL A AR G GK+H KWSP +T + Y
Sbjct: 123 PDVVP------------VYGEIPILKLIKDQSIRLEAYARLGRGKEHIKWSPVSTAAHKY 170
Query: 557 EPEIHINDD 583
P I I+ +
Sbjct: 171 VPAITIDSE 179
[191][TOP]
>UniRef100_UPI00016E11AB UPI00016E11AB related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AB
Length = 347
Score = 116 bits (291), Expect = 1e-24
Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
++ + L + F++ DA+I NA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 47 QIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQDEVLAHR 106
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R S D +A + +G E +++ L++ C + S D
Sbjct: 107 LGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASSKDSSDPRELY 164
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+YS D VP+ D ++ + V+ I+I +LR GQEL + KGIGKDHA
Sbjct: 165 LNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIKGIGKDHA 224
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ PEI
Sbjct: 225 KFSPVATASYRLLPEI 240
[192][TOP]
>UniRef100_UPI00016E11AA UPI00016E11AA related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AA
Length = 351
Score = 116 bits (291), Expect = 1e-24
Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
++ + L + F++ DA+I NA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 51 QIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQDEVLAHR 110
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R S D +A + +G E +++ L++ C + S D
Sbjct: 111 LGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASSKDSSDPRELY 168
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+YS D VP+ D ++ + V+ I+I +LR GQEL + KGIGKDHA
Sbjct: 169 LNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIKGIGKDHA 228
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ PEI
Sbjct: 229 KFSPVATASYRLLPEI 244
[193][TOP]
>UniRef100_A2ATX1 Polymerase (RNA) I polypeptide C n=2 Tax=Danio rerio
RepID=A2ATX1_DANRE
Length = 362
Score = 116 bits (291), Expect = 1e-24
Identities = 71/196 (36%), Positives = 112/196 (57%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
R++I ++ F++ DA+IANA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 66 RIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHR 125
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGL+P+ ++ R R S D + + D +++ L+VKC + S D
Sbjct: 126 LGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPRAPKDSSDPKELY 179
Query: 362 ----LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+YS D +P+ D +D+ V+ I++ ++R GQEL + KGIGKDHA
Sbjct: 180 LNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIGKDHA 239
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ PEI
Sbjct: 240 KFSPVATASYRLLPEI 255
[194][TOP]
>UniRef100_Q235X0 DNA-directed RNA polymerase I 40 kDa polypeptide n=1
Tax=Tetrahymena thermophila SB210 RepID=Q235X0_TETTH
Length = 336
Score = 116 bits (291), Expect = 1e-24
Identities = 74/200 (37%), Positives = 105/200 (52%), Gaps = 18/200 (9%)
Frame = +2
Query: 41 KDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 220
K+ F+L DA IANALRR+MI+EVPT+AI V I N+S++ DE +AHRLGLIP+
Sbjct: 54 KNKELEFDLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLGLIPIY 113
Query: 221 SERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDE--------TLDVTSKDLYSSD 376
++ + + D E S++F L++KC E L+ + + Y +
Sbjct: 114 ADPRLFEEKQEE------DEYNEKNSLKFTLKIKCSKKEQYKNYSEADLENLTPETYLEN 167
Query: 377 HTVVPVDFSPDTSSDS----------AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 526
V DF + + V+ II+ KLR QE+ I +KGIGK HAKW
Sbjct: 168 AIVYSGDFKWVSQGEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQKGIGKTHAKW 227
Query: 527 SPAATVSFMYEPEIHINDDL 586
SP T + PEI+IN D+
Sbjct: 228 SPVCTAYYRLMPEININSDI 247
[195][TOP]
>UniRef100_UPI000194C203 PREDICTED: polymerase (RNA) I polypeptide C, 30kDa n=1
Tax=Taeniopygia guttata RepID=UPI000194C203
Length = 346
Score = 116 bits (290), Expect = 2e-24
Identities = 75/210 (35%), Positives = 116/210 (55%), Gaps = 17/210 (8%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + ++D F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVIREEEDALEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R D + + D +++F L++KC + S D
Sbjct: 110 LGLIPIRADPRLFEYRNQGDQEGTEID------TLQFQLKIKCKRNPQAAKESSDPDELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+YS T VP+ D D+ V+ I+I LR GQE+ + KGIGKDHA
Sbjct: 164 FNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDDILIALLRPGQEIDVLMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI----HINDDLMETL 598
K+SP AT S+ P+I + D+ ETL
Sbjct: 224 KFSPVATASYRLLPDITLLQPVEDEAAETL 253
[196][TOP]
>UniRef100_B2WCA1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Pyrenophora tritici-repentis Pt-1C-BFP
RepID=B2WCA1_PYRTR
Length = 376
Score = 116 bits (290), Expect = 2e-24
Identities = 74/202 (36%), Positives = 108/202 (53%), Gaps = 23/202 (11%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 232
A+F L D S+ANA RR+++SE+PT+AI+ V I N+S++ DE +AHRLGLIPL +RA
Sbjct: 62 AQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRA 121
Query: 233 MAMR---FSRDCDACDGD-GQCEFCSVEFHLRVKCM-------------TDETLDVTSKD 361
R +++ D +G G +V L+ KC TD +
Sbjct: 122 TLRRMKWYAKPTDEDEGSGGPTSENTVALTLKTKCTWQPGGVARAVAGETDPDRLYVGHN 181
Query: 362 LYSSDHTVVPVDFSPDTSSDS------AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+Y+ D P + S++ + N I+I K+R GQEL +R A KGIG+DHAK
Sbjct: 182 VYAKDMRFEPNGNQAENLSEAEGKHIRSTNPDILICKMRPGQELEIRMHAIKGIGQDHAK 241
Query: 524 WSPAATVSFMYEPEIHINDDLM 589
+SP AT S+ P I I ++
Sbjct: 242 FSPVATASYRLMPTIDITKPIV 263
[197][TOP]
>UniRef100_C0SF50 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SF50_PARBP
Length = 345
Score = 115 bits (289), Expect = 2e-24
Identities = 73/193 (37%), Positives = 103/193 (53%), Gaps = 19/193 (9%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 226
A F L DASIANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 29 ASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 88
Query: 227 RAMAMRFSR---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYS 370
+R+ R + D G ++ ++ HL VKC + +D +Y+
Sbjct: 89 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVKCKKNPKASPDEQDPLKLYSHAHVYA 148
Query: 371 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
D T PV F N I++ KLR GQ++ + KGIG DHAK+SP
Sbjct: 149 KDITFQPVGRQEAYFPEPDGGIRPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPV 208
Query: 536 ATVSFMYEPEIHI 574
AT S+ P+I I
Sbjct: 209 ATASYRLLPDIRI 221
[198][TOP]
>UniRef100_UPI0000F2C148 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Monodelphis domestica RepID=UPI0000F2C148
Length = 346
Score = 115 bits (288), Expect = 3e-24
Identities = 72/201 (35%), Positives = 112/201 (55%), Gaps = 13/201 (6%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
+ R RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE
Sbjct: 45 FEREFRVDVVHMDENSLEFDMIGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDE 104
Query: 185 FIAHRLGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD 361
+AHRLGLIP+ ++ R R D D + D +++F L+VKC + S D
Sbjct: 105 ILAHRLGLIPIRADPRLFEYRNQGDEDGTEID------TLQFQLKVKCTRNPQAAKDSSD 158
Query: 362 ---------LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGI 505
+Y+ T +P+ D + V+ I+I +LR GQEL L KGI
Sbjct: 159 PNELYLNHKVYTKHMTWIPLGNQADVFPEGTIRPVHDDILIAQLRPGQELDLLMHCVKGI 218
Query: 506 GKDHAKWSPAATVSFMYEPEI 568
GKDHAK+SP AT S+ P+I
Sbjct: 219 GKDHAKFSPVATASYRLLPDI 239
[199][TOP]
>UniRef100_UPI00003ACD10 PREDICTED: similar to RNA polymerase I subunit hRPA39 isoform 2 n=1
Tax=Gallus gallus RepID=UPI00003ACD10
Length = 346
Score = 115 bits (288), Expect = 3e-24
Identities = 75/210 (35%), Positives = 116/210 (55%), Gaps = 17/210 (8%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + +D + F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVREEDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R D + + D +++F L++KC + S D
Sbjct: 110 LGLIPIRADPRLFEYRNQGDEEGTEID------TLQFQLKIKCSRNPQAAKESSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+YS T VP+ D D+ V+ I+I LR GQE+ + KGIGKDHA
Sbjct: 164 FNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDDILIALLRPGQEIDVLMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI----HINDDLMETL 598
K+SP AT S+ P+I + D+ ETL
Sbjct: 224 KFSPVATASYRLLPDITLLQPVEDEAAETL 253
[200][TOP]
>UniRef100_B5X7Z3 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Salmo
salar RepID=B5X7Z3_SALSA
Length = 353
Score = 115 bits (288), Expect = 3e-24
Identities = 73/205 (35%), Positives = 116/205 (56%), Gaps = 12/205 (5%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
R+ + ++ + F++ DA+IANA RR++++EVPT+A++ V I N+S++ DE +AHR
Sbjct: 57 RIDVVQMDETSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLIYNNTSIIQDEILAHR 116
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD------ 361
LGLIP+ ++ R +A D +G E +++ L++KC + S D
Sbjct: 117 LGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNPRATKDSADPRELYL 171
Query: 362 ---LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+YS D P+ D +D+ V+ I++ +LR GQEL + KGIG+DHAK
Sbjct: 172 NHMVYSKDMKWAPIGNQADVFADANIGPVHGDILLAQLRPGQELDIVMHCVKGIGQDHAK 231
Query: 524 WSPAATVSFMYEPEIHINDDLMETL 598
+SP AT S+ PEI LMET+
Sbjct: 232 FSPVATASYRLLPEI----TLMETV 252
[201][TOP]
>UniRef100_Q6C4T2 YALI0E23947p n=1 Tax=Yarrowia lipolytica RepID=Q6C4T2_YARLI
Length = 339
Score = 115 bits (288), Expect = 3e-24
Identities = 72/198 (36%), Positives = 103/198 (52%), Gaps = 9/198 (4%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
+VKI L D+ + F+L D S+ANA RR+MI+++PTIA++ V I N+S++ DE +AHR
Sbjct: 46 QVKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFIHANTSIIQDEVLAHR 105
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD--LYSS 373
LGL+PL R DA + + + S F LR+ + D T K+ +Y+
Sbjct: 106 LGLVPLVINPERINALPRGLDASEIEDYYD-DSNTFVLRLNVTCERLADGTMKNAHIYAR 164
Query: 374 DHTVVPVDFSPDTSSDSAV-------NKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 532
D T P+ D + N I+I KLR Q + L G G DHAK+SP
Sbjct: 165 DITFDPMGNQCQWVKDEGLENVFKVANPDILIAKLRPNQSINLTMFCHLGFGHDHAKFSP 224
Query: 533 AATVSFMYEPEIHINDDL 586
AT S+ P I I D+
Sbjct: 225 VATASYRLMPTITITGDI 242
[202][TOP]
>UniRef100_Q4PBM5 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4PBM5_USTMA
Length = 320
Score = 115 bits (288), Expect = 3e-24
Identities = 77/198 (38%), Positives = 104/198 (52%), Gaps = 13/198 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
+V + L D F+L DASIANA+RRV+++EVPT+AI+ V I N+S++ DE ++HR
Sbjct: 94 KVIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 153
Query: 200 LGLIPLT-SERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETL--DVTSKDLYS 370
LGL+PL + +AMR GD + +V FHL+ KC + + T D
Sbjct: 154 LGLVPLAINPDKVAMRM-------PGDEADDSNTVVFHLKAKCERNRSAARGETDPDKLY 206
Query: 371 SDHTVVPVDFSPDT----------SSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
H V D S V I+I KLR GQEL L KGIGKDHA
Sbjct: 207 IGHNVYSEQLRWDAKGGQEKDFADSPPRPVQDKILIAKLRPGQELDLELHCEKGIGKDHA 266
Query: 521 KWSPAATVSFMYEPEIHI 574
K+SP AT ++ P I +
Sbjct: 267 KFSPVATATYRLLPHIQL 284
[203][TOP]
>UniRef100_C1GK69 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GK69_PARBD
Length = 380
Score = 115 bits (288), Expect = 3e-24
Identities = 73/193 (37%), Positives = 103/193 (53%), Gaps = 19/193 (9%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 226
A F L DASIANA RR++ISE+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 64 ASFSLIGVDASIANAFRRILISEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 123
Query: 227 RAMAMRFSR---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYS 370
+R+ R + D G ++ ++ HL V+C + +D +Y+
Sbjct: 124 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPDEQDPLKLYSHAHVYA 183
Query: 371 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
D T PV F N I++ KLR GQ++ + KGIG DHAK+SP
Sbjct: 184 KDITFQPVGRQEAYFPEPDGGIRPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPV 243
Query: 536 ATVSFMYEPEIHI 574
AT S+ P+I I
Sbjct: 244 ATASYRLLPDIRI 256
[204][TOP]
>UniRef100_B3N4C9 GG25034 n=1 Tax=Drosophila erecta RepID=B3N4C9_DROER
Length = 329
Score = 115 bits (287), Expect = 4e-24
Identities = 76/201 (37%), Positives = 116/201 (57%), Gaps = 13/201 (6%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+KI + +D F+L +IANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+
Sbjct: 39 IKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 98
Query: 203 GLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSS 373
GL+PL ++ R A R +A E ++EF L+VKC D D ++ D
Sbjct: 99 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 153
Query: 374 DHTV-------VPVDFSPDTSSDSAVN---KGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+H V +P S+SAVN I+I +LR G EL LR +A KG+G+DHAK
Sbjct: 154 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAK 213
Query: 524 WSPAATVSFMYEPEIHINDDL 586
+SP AT ++ P+I +N ++
Sbjct: 214 FSPVATATYRLLPQIKLNREV 234
[205][TOP]
>UniRef100_B6GYD0 Pc12g12250 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GYD0_PENCW
Length = 374
Score = 115 bits (287), Expect = 4e-24
Identities = 74/193 (38%), Positives = 108/193 (55%), Gaps = 19/193 (9%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 226
A F L DA++ANA RR++++E+PTIAI+ I N+SV+ DE +A RLGLIPL + E
Sbjct: 64 ASFSLIGLDAAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLASRLGLIPLKGSIE 123
Query: 227 RAMAMRFSRDCDACDG----DGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LY 367
M + + DG DG C+F ++ HL V+C +E D +D +Y
Sbjct: 124 GINWMHWFKKASE-DGSEEEDGPCDFNTIVLHLDVECYKNEYADKDEQDPRKLYTNAHVY 182
Query: 368 SSDHTVVPV----DFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
+ D +PV + + + VN I+I KLR GQ++ + +KGIG DHAK+SP
Sbjct: 183 AKDLMYMPVGRQEQYFVGDGAIAPVNPDILIAKLRPGQKIEMELHCQKGIGADHAKFSPV 242
Query: 536 ATVSFMYEPEIHI 574
AT S+ P+I I
Sbjct: 243 ATASYRLLPDIKI 255
[206][TOP]
>UniRef100_A2SSV7 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanocorpusculum
labreanum Z RepID=A2SSV7_METLZ
Length = 275
Score = 115 bits (287), Expect = 4e-24
Identities = 75/181 (41%), Positives = 98/181 (54%)
Frame = +2
Query: 38 LKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 217
L D +ARF + + ANALRR MI EVPT+AI+ + I N+SVL DE +AHRLGLIP+
Sbjct: 8 LDDSVARFTIHGATPAFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIPI 67
Query: 218 TSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVD 397
++ ++ R +C G+G C C+V F L V + VTS DL S D VVP
Sbjct: 68 KTD--LSQYVPRSECSCGGEG-CPHCTVMFTLSV----EGPKMVTSGDLISMDENVVP-- 118
Query: 398 FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHIN 577
V+ I IVKL Q++ L A+A GK+HAKW P + P I I
Sbjct: 119 ----------VHNNIPIVKLWENQKVVLEAVAEVNYGKEHAKWQPTLACGYSEYPVITIK 168
Query: 578 D 580
D
Sbjct: 169 D 169
[207][TOP]
>UniRef100_Q6DRM8 RNA polymerase I 140 kDa subunit n=1 Tax=Danio rerio
RepID=Q6DRM8_DANRE
Length = 343
Score = 114 bits (286), Expect = 5e-24
Identities = 70/196 (35%), Positives = 112/196 (57%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
R++I ++ F++ DA+IANA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 47 RIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHR 106
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGL+P+ ++ R R S D + + D +++ L+VKC + S D
Sbjct: 107 LGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPRAPKDSSDPKELY 160
Query: 362 ----LYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+YS D +P+ D +D+ V+ I++ ++R GQEL + KGIGK+HA
Sbjct: 161 LNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIGKNHA 220
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ PEI
Sbjct: 221 KFSPVATASYRLLPEI 236
[208][TOP]
>UniRef100_Q32L22 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Bos
taurus RepID=RPAC1_BOVIN
Length = 346
Score = 114 bits (284), Expect = 8e-24
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R D +G E +++F L+V+C + S D
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------EGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+Y+ T VP+ D + A V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 164 VNHRVYTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P+I
Sbjct: 224 KFSPVATASYRLLPDI 239
[209][TOP]
>UniRef100_Q29L21 GA17664 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=Q29L21_DROPS
Length = 333
Score = 113 bits (283), Expect = 1e-23
Identities = 75/202 (37%), Positives = 115/202 (56%), Gaps = 13/202 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
+V I +D F++ +IANA RR+M+SEVP++AI+ V I N+S++ DE +AHR
Sbjct: 42 QVAIVRNDEDGLEFDMIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHR 101
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYS 370
+GL+PL ++ R A R G+ E ++E+ L+VKC D + D ++ D
Sbjct: 102 MGLLPLKADPRLFAYRTEE-----SGEAGTEQDTLEYELKVKCTRRKDASKDQSNFDDIY 156
Query: 371 SDHTV-------VPVDFSPDTSSDSAVN---KGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+H V +P S+S VN + I+I +LR G EL LR +A KG+GKDHA
Sbjct: 157 KNHKVYSGHLKWLPKGKQAQIYSESMVNCIHEDILIAQLRPGHELDLRLVAVKGLGKDHA 216
Query: 521 KWSPAATVSFMYEPEIHINDDL 586
K+SP AT + P+I +N ++
Sbjct: 217 KFSPVATAYYRLLPQIKLNREV 238
[210][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
histolytica HM-1:IMSS RepID=C4M554_ENTHI
Length = 283
Score = 113 bits (283), Expect = 1e-23
Identities = 75/200 (37%), Positives = 102/200 (51%), Gaps = 1/200 (0%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
Y R P + E K++ F + TD S+ N LRRV+++E PTIAI LV + NSS L DE
Sbjct: 6 YNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDE 65
Query: 185 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL 364
FIAHRLGLIP+ S F DA L+ + +++ + VTS DL
Sbjct: 66 FIAHRLGLIPIDS--TQIHNFEDTDDAI------------LELKEENNSNQLVVVTSNDL 111
Query: 365 YS-SDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
S D V PV++ D I+I +L Q + + +KG GK HAKW+P
Sbjct: 112 VSIGDKRVAPVNYKNDVDP-------IVITQLGPRQNIHMVCYVKKGTGKFHAKWNPTCQ 164
Query: 542 VSFMYEPEIHINDDLMETLT 601
F +I IND+ M +LT
Sbjct: 165 CVFQTLADIRINDEKMISLT 184
[211][TOP]
>UniRef100_C1H4P1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H4P1_PARBA
Length = 380
Score = 113 bits (283), Expect = 1e-23
Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 226
A F L DASIANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 64 ASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 123
Query: 227 RAMAMRFSR---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYS 370
+R+ R + D G ++ ++ HL V+C + D +Y+
Sbjct: 124 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPNELDPLKLYSHAHVYA 183
Query: 371 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
D T PV F N I++ KLR GQ++ + KGIG DHAK+SP
Sbjct: 184 KDITFQPVGRQEAYFPEPDGGIRPTNPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPV 243
Query: 536 ATVSFMYEPEIHI 574
AT S+ P+I I
Sbjct: 244 ATASYRLLPDIRI 256
[212][TOP]
>UniRef100_A3DMQ6 DNA-directed RNA polymerase, subunit D n=1 Tax=Staphylothermus
marinus F1 RepID=A3DMQ6_STAMF
Length = 280
Score = 113 bits (283), Expect = 1e-23
Identities = 72/177 (40%), Positives = 101/177 (57%), Gaps = 2/177 (1%)
Frame = +2
Query: 56 RFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 235
R ++D + N++RR +I+EVPT+AID V +NSSV DE+IAHRLGLIPLTSE A+
Sbjct: 14 RLYIKDIPLHVLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAAL 73
Query: 236 -AMRFSRDC-DACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPD 409
+ +C +A D E C V+ L K + + + S DL +SD V P
Sbjct: 74 DKYKSPEECREAGDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSDPDVKP------ 127
Query: 410 TSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHIND 580
V I I+ L + QE+RL A AR G GK+HAKWSP + + Y +I+I++
Sbjct: 128 ------VYDNIPIIVLGKNQEIRLEAYARLGRGKEHAKWSPVSVAAHKYIADIYIDE 178
[213][TOP]
>UniRef100_Q9VMX3 CG3756 n=1 Tax=Drosophila melanogaster RepID=Q9VMX3_DROME
Length = 333
Score = 113 bits (282), Expect = 1e-23
Identities = 76/201 (37%), Positives = 114/201 (56%), Gaps = 13/201 (6%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+KI +D F+L +IANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+
Sbjct: 43 IKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 102
Query: 203 GLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSS 373
GL+PL ++ R A R +A E ++EF L+VKC D D ++ D
Sbjct: 103 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 157
Query: 374 DHTV-------VPVDFSPDTSSDSAVN---KGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+H V +P S+SAVN I+I +LR G EL LR +A KG+G+DHAK
Sbjct: 158 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAK 217
Query: 524 WSPAATVSFMYEPEIHINDDL 586
+SP AT ++ P I +N ++
Sbjct: 218 FSPVATATYRLLPMIKLNREV 238
[214][TOP]
>UniRef100_B4NW96 GE11271 n=1 Tax=Drosophila yakuba RepID=B4NW96_DROYA
Length = 333
Score = 113 bits (282), Expect = 1e-23
Identities = 76/208 (36%), Positives = 117/208 (56%), Gaps = 13/208 (6%)
Frame = +2
Query: 2 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 181
+Y +KI + +D F+L +IANA RR+M+S+VP++AI+ V I N+S++ D
Sbjct: 36 AYKEKLHIKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQD 95
Query: 182 EFIAHRLGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC--MTDETLDVT 352
E +AHR+GL+PL ++ R A R +A E ++EF L+VKC D D +
Sbjct: 96 EVLAHRMGLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQS 150
Query: 353 SKDLYSSDHTV-------VPVDFSPDTSSDSAVN---KGIIIVKLRRGQELRLRAIARKG 502
+ D +H V +P ++SAVN I+I +LR G EL LR +A KG
Sbjct: 151 NFDDIYKNHKVYSGHLKWLPKGKQAQIYNESAVNCIHDDILIAQLRPGHELDLRLVAVKG 210
Query: 503 IGKDHAKWSPAATVSFMYEPEIHINDDL 586
+G+DHAK+SP AT ++ P I +N ++
Sbjct: 211 LGRDHAKFSPVATATYRLLPLIKLNREV 238
[215][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
dispar SAW760 RepID=B0EHR6_ENTDI
Length = 283
Score = 113 bits (282), Expect = 1e-23
Identities = 75/200 (37%), Positives = 102/200 (51%), Gaps = 1/200 (0%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
Y R P + E K++ F + TD S+ N LRRV+++E PTIAI LV + NSS L DE
Sbjct: 6 YNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDE 65
Query: 185 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL 364
FIAHRLGLIP+ S F DA L+ + +++ + VTS DL
Sbjct: 66 FIAHRLGLIPIDS--TQIHNFEDTDDAI------------LELKKENNSNQLVVVTSNDL 111
Query: 365 YS-SDHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 541
S D V PV++ D I+I +L Q + + +KG GK HAKW+P
Sbjct: 112 VSIGDKRVAPVNYRNDVDP-------IVITQLGPRQNIHMVCYVKKGTGKFHAKWNPTCQ 164
Query: 542 VSFMYEPEIHINDDLMETLT 601
F +I IND+ M +LT
Sbjct: 165 CVFQTLADIRINDEKMISLT 184
[216][TOP]
>UniRef100_A0D2I2 Chromosome undetermined scaffold_35, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D2I2_PARTE
Length = 316
Score = 113 bits (282), Expect = 1e-23
Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 11/205 (5%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
+ R + I D+ FE+ + DA IAN+LRR+MI+E+PT+AI V++ N+SV+ DE
Sbjct: 27 FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86
Query: 185 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC------MTDETLD 346
+AHRLGLIP+ ++ ++F + D + E S++F L KC D+ ++
Sbjct: 87 VLAHRLGLIPIIAD---PLQF---VEKDDQEEYNELNSIDFTLYAKCEKKPNSKQDDPIE 140
Query: 347 --VTSKDLYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGK 511
T+ ++SS P + + V+ III KLR QEL LR I KG+GK
Sbjct: 141 QQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVHSNIIIAKLRENQELNLRLICEKGVGK 200
Query: 512 DHAKWSPAATVSFMYEPEIHINDDL 586
HAKWSP T + P I I + L
Sbjct: 201 RHAKWSPVCTAFYKLMPSITIKNQL 225
[217][TOP]
>UniRef100_Q5KIG6 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q5KIG6_CRYNE
Length = 350
Score = 113 bits (282), Expect = 1e-23
Identities = 74/193 (38%), Positives = 105/193 (54%), Gaps = 13/193 (6%)
Frame = +2
Query: 29 IRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 208
++ L F+L DASIANALRR +I+EVPT+AI+ V + N+S++ DE + HR+GL
Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110
Query: 209 IPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD-------- 361
+PL + R++ R S + + D +V F LRV+C +D + D
Sbjct: 111 VPLKIDPRSLRYRPSANSQPHEHD------TVVFDLRVRCDRRPNVDRSETDPKKMYFDS 164
Query: 362 -LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 529
+YS VP A VN I++VKLR GQ++ L ARKG+G DHAK+S
Sbjct: 165 NVYSGMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFS 224
Query: 530 PAATVSFMYEPEI 568
P AT S+ P I
Sbjct: 225 PVATASYRLLPHI 237
[218][TOP]
>UniRef100_C6HA00 DNA-directed RNA polymerase I and III n=1 Tax=Ajellomyces
capsulatus H143 RepID=C6HA00_AJECH
Length = 380
Score = 113 bits (282), Expect = 1e-23
Identities = 75/204 (36%), Positives = 107/204 (52%), Gaps = 19/204 (9%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SE 226
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSE 123
Query: 227 RAMAMRFSR---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYS 370
+R+ R + G ++ +V HL V+C + D +Y+
Sbjct: 124 GINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYA 183
Query: 371 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
D T PV F + N I++ KLR GQ++ + KGIG DHAK+SP
Sbjct: 184 KDITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPV 243
Query: 536 ATVSFMYEPEIHINDDLMETLTLK 607
AT S+ P+I I ++ LK
Sbjct: 244 ATASYRLLPDIKIIRPILGNDALK 267
[219][TOP]
>UniRef100_C0NBQ0 DNA-directed RNA polymerase I and III polypeptide n=1
Tax=Ajellomyces capsulatus G186AR RepID=C0NBQ0_AJECG
Length = 380
Score = 113 bits (282), Expect = 1e-23
Identities = 75/204 (36%), Positives = 107/204 (52%), Gaps = 19/204 (9%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SE 226
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSE 123
Query: 227 RAMAMRFSR---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYS 370
+R+ R + G ++ +V HL V+C + D +Y+
Sbjct: 124 GINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYA 183
Query: 371 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
D T PV F + N I++ KLR GQ++ + KGIG DHAK+SP
Sbjct: 184 KDITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPV 243
Query: 536 ATVSFMYEPEIHINDDLMETLTLK 607
AT S+ P+I I ++ LK
Sbjct: 244 ATASYRLLPDIKIIRPILGNDALK 267
[220][TOP]
>UniRef100_A6R4R6 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Ajellomyces capsulatus NAm1 RepID=A6R4R6_AJECN
Length = 380
Score = 113 bits (282), Expect = 1e-23
Identities = 75/204 (36%), Positives = 107/204 (52%), Gaps = 19/204 (9%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SE 226
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSE 123
Query: 227 RAMAMRFSR---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYS 370
+R+ R + G ++ +V HL V+C + D +Y+
Sbjct: 124 GINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYA 183
Query: 371 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
D T PV F + N I++ KLR GQ++ + KGIG DHAK+SP
Sbjct: 184 KDITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPV 243
Query: 536 ATVSFMYEPEIHINDDLMETLTLK 607
AT S+ P+I I ++ LK
Sbjct: 244 ATASYRLLPDIKIIRPILGNDALK 267
[221][TOP]
>UniRef100_B5IWT9 RNA polymerase Rpb3/Rpb11 dimerisation domain n=1 Tax=Thermococcus
barophilus MP RepID=B5IWT9_9EURY
Length = 258
Score = 113 bits (282), Expect = 1e-23
Identities = 78/197 (39%), Positives = 101/197 (51%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
++K+ E ++D RF L DA+ ANALRRV+I EVPT A+D VE N S L DE IAHR
Sbjct: 2 KIKVLEKREDAIRFILEGVDAAFANALRRVIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH 379
L +IPLT+ RF D D E+ + + + V S DL S D
Sbjct: 62 LAMIPLTTPYD---RFELDALELD----------EYTVTLSLEAEGPGVVYSGDLKSDDP 108
Query: 380 TVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYE 559
V P V I IVKL GQ+L L A A+ G GKDHAKW P + Y
Sbjct: 109 DVKP------------VTPNIPIVKLAEGQKLTLNAYAKLGRGKDHAKWQPGFAY-YKYL 155
Query: 560 PEIHINDDLMETLTLKE 610
EIH++ ++ E +K+
Sbjct: 156 TEIHVSKEVPEWEKIKK 172
[222][TOP]
>UniRef100_B4Q356 GD23312 n=1 Tax=Drosophila simulans RepID=B4Q356_DROSI
Length = 333
Score = 112 bits (281), Expect = 2e-23
Identities = 76/201 (37%), Positives = 114/201 (56%), Gaps = 13/201 (6%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+KI +D F+L +IANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+
Sbjct: 43 IKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 102
Query: 203 GLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSS 373
GL+PL ++ R A R +A E ++EF L+VKC D D ++ D
Sbjct: 103 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 157
Query: 374 DHTV-------VPVDFSPDTSSDSAVN---KGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+H V +P S+SAVN I+I +LR G EL LR +A KG+G+DHAK
Sbjct: 158 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAK 217
Query: 524 WSPAATVSFMYEPEIHINDDL 586
+SP AT ++ P I +N ++
Sbjct: 218 FSPVATATYRLLPLIKLNREV 238
[223][TOP]
>UniRef100_C5A249 DNA-directed RNA polymerase subunit D (RpoD) n=1 Tax=Thermococcus
gammatolerans EJ3 RepID=C5A249_THEGJ
Length = 260
Score = 112 bits (281), Expect = 2e-23
Identities = 77/198 (38%), Positives = 101/198 (51%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+ +I E ++D +F LR D ANALRR +++EVPT A+D VE N S L DE IAH
Sbjct: 3 PKFEIFERREDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RL +IPLT+ RFS D D ++ + + + V S DL S D
Sbjct: 63 RLAMIPLTTP---VERFSLDALELD----------DYTVTLSLQAEGPGMVYSGDLKSDD 109
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
V P N I IVKL GQ+L A A+ G GKDHAKW P V + Y
Sbjct: 110 EGVKP------------ANPNIPIVKLAEGQKLTFNAYAKLGRGKDHAKWQP-GFVYYKY 156
Query: 557 EPEIHINDDLMETLTLKE 610
EIH++ ++ + LKE
Sbjct: 157 LTEIHVSKEVPDWEELKE 174
[224][TOP]
>UniRef100_A0D420 Chromosome undetermined scaffold_37, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D420_PARTE
Length = 316
Score = 112 bits (280), Expect = 2e-23
Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 11/205 (5%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
+ R + I D+ FE+ + DA IAN+LRR+MI+E+PT+AI V++ N+SV+ DE
Sbjct: 27 FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86
Query: 185 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC------MTDETLD 346
+AHRLGLIP+ ++ ++F + D + E S++F L KC D+ ++
Sbjct: 87 VLAHRLGLIPIIAD---PLQF---IEKDDQEEYNELNSIDFTLVAKCEKKPNSKHDDPIE 140
Query: 347 --VTSKDLYSSDHTVVPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGK 511
T+ ++SS P + + V+ III KLR QEL LR I KG+GK
Sbjct: 141 QQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVHSNIIIAKLRENQELNLRLICEKGVGK 200
Query: 512 DHAKWSPAATVSFMYEPEIHINDDL 586
HAKWSP T + P I I + L
Sbjct: 201 RHAKWSPVCTAFYKLMPSITIKNQL 225
[225][TOP]
>UniRef100_B7R325 RNA polymerase Rpb3/Rpb11 dimerisation domain n=1 Tax=Thermococcus
sp. AM4 RepID=B7R325_9EURY
Length = 260
Score = 112 bits (280), Expect = 2e-23
Identities = 78/198 (39%), Positives = 100/198 (50%)
Frame = +2
Query: 17 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 196
P+ +I E + D +F LR D ANALRR +++EVPT A+D VE N S L DE IAH
Sbjct: 3 PKFEILERRGDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 197 RLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD 376
RL +IPLT+ RFS D D ++ + + + V S DL S D
Sbjct: 63 RLAMIPLTTP---VERFSLDSLDLD----------DYTVTLSLQAEGPGMVYSGDLKSDD 109
Query: 377 HTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMY 556
V P N I IVKL GQ+L A AR G GKDHAKW P V + Y
Sbjct: 110 EGVKP------------ANPNIPIVKLAEGQKLTFNAYARLGRGKDHAKWQP-GFVYYKY 156
Query: 557 EPEIHINDDLMETLTLKE 610
EIH++ ++ + LKE
Sbjct: 157 LTEIHVSKEVPDWEELKE 174
[226][TOP]
>UniRef100_UPI00005A26F8 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 6 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F8
Length = 328
Score = 112 bits (279), Expect = 3e-23
Identities = 71/196 (36%), Positives = 109/196 (55%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R D D E +++F L+V+C + S D
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+YS T VP+ D + V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 164 VNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P+I
Sbjct: 224 KFSPVATASYRLLPDI 239
[227][TOP]
>UniRef100_UPI00005A26F7 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 5 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F7
Length = 338
Score = 112 bits (279), Expect = 3e-23
Identities = 71/196 (36%), Positives = 109/196 (55%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R D D E +++F L+V+C + S D
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+YS T VP+ D + V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 164 VNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P+I
Sbjct: 224 KFSPVATASYRLLPDI 239
[228][TOP]
>UniRef100_UPI00005A26F4 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 2 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F4
Length = 281
Score = 112 bits (279), Expect = 3e-23
Identities = 71/196 (36%), Positives = 109/196 (55%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R D D E +++F L+V+C + S D
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+YS T VP+ D + V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 164 VNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P+I
Sbjct: 224 KFSPVATASYRLLPDI 239
[229][TOP]
>UniRef100_UPI00004A557E PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 1 n=1 Tax=Canis
lupus familiaris RepID=UPI00004A557E
Length = 346
Score = 112 bits (279), Expect = 3e-23
Identities = 71/196 (36%), Positives = 109/196 (55%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R D D E +++F L+V+C + S D
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+YS T VP+ D + V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 164 VNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P+I
Sbjct: 224 KFSPVATASYRLLPDI 239
[230][TOP]
>UniRef100_A1L3C2 Polr1c protein n=2 Tax=Mus musculus RepID=A1L3C2_MOUSE
Length = 347
Score = 112 bits (279), Expect = 3e-23
Identities = 69/196 (35%), Positives = 110/196 (56%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + ++ +D F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 51 RVDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 110
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R + + + D +++F L+V+C + S D
Sbjct: 111 LGLIPILADPRLFEYRNQGEEEGTEID------TLQFRLQVRCTRNPNAAKDSSDPNELY 164
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+Y+ T VP+ D + V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 165 VNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHA 224
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P I
Sbjct: 225 KFSPVATASYRLLPAI 240
[231][TOP]
>UniRef100_Q171Q8 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
RepID=Q171Q8_AEDAE
Length = 335
Score = 112 bits (279), Expect = 3e-23
Identities = 65/197 (32%), Positives = 112/197 (56%), Gaps = 12/197 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
++ I +++ F++ + +IANA RR+M+SEVP++AI+ V I N+S++ DE +AHR
Sbjct: 45 QIVIVRYEENELEFDMVGVNPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDEVLAHR 104
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSS 373
LGLIPL ++ + + + D ++EF L+VKC ++ ++T+ D
Sbjct: 105 LGLIPLRADPRLF-----EYKTNENDPPNALDTLEFELKVKCTKKNKDSTEITNNDSMYK 159
Query: 374 DHTV-------VPVDFSPDTSSDS---AVNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+H++ +PV ++ ++ I+I K+R G E ++ A KGIGKDHAK
Sbjct: 160 NHSIYSGQIKWIPVGNQASIYKEADVGPIDDDILISKMRPGHEFDIKLFAMKGIGKDHAK 219
Query: 524 WSPAATVSFMYEPEIHI 574
+SP AT S+ PE+ +
Sbjct: 220 FSPVATASYRLLPEVRL 236
[232][TOP]
>UniRef100_C5GBG6 DNA-directed RNA polymerase I and III polypeptide n=2
Tax=Ajellomyces dermatitidis RepID=C5GBG6_AJEDR
Length = 380
Score = 111 bits (278), Expect = 4e-23
Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 19/193 (9%)
Frame = +2
Query: 53 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SE 226
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT +E
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGAAE 123
Query: 227 RAMAMRFSRDCDACDGDGQCEFC---SVEFHLRVKCMTDETLDVTSKD---------LYS 370
+R+ R D E ++ HL V+C + +D +Y+
Sbjct: 124 GINWLRWFRQPTEGKPDSGSELSDSNTIVLHLSVECTKNPKASANEEDPQKLYNHAHVYA 183
Query: 371 SDHTVVPVD-----FSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
D T PV F + + N I++ KLR GQ++ + KGIG DHAK+SP
Sbjct: 184 KDITFHPVGRQEAYFPEPYGAIRSANPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPV 243
Query: 536 ATVSFMYEPEIHI 574
AT S+ P+I I
Sbjct: 244 ATASYRLLPDIRI 256
[233][TOP]
>UniRef100_Q2HPH1 RNA polymerase subunit I (Fragment) n=1 Tax=Bos taurus
RepID=Q2HPH1_BOVIN
Length = 250
Score = 110 bits (276), Expect = 7e-23
Identities = 69/190 (36%), Positives = 108/190 (56%), Gaps = 13/190 (6%)
Frame = +2
Query: 38 LKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 217
+ ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+
Sbjct: 3 MDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI 62
Query: 218 TSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LY 367
++ R R D +G E +++F L+V+C + S D +Y
Sbjct: 63 HADPRLFEYRNQGD------EGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVY 116
Query: 368 SSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 538
+ T VP+ D + A V+ I+I +LR GQE+ L KGIGKDHAK+SP A
Sbjct: 117 TRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVA 176
Query: 539 TVSFMYEPEI 568
T S+ P+I
Sbjct: 177 TASYRLLPDI 186
[234][TOP]
>UniRef100_B8NHK8 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=2
Tax=Aspergillus RepID=B8NHK8_ASPFN
Length = 373
Score = 110 bits (276), Expect = 7e-23
Identities = 71/189 (37%), Positives = 103/189 (54%), Gaps = 17/189 (8%)
Frame = +2
Query: 59 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSERA 232
F L DASIANA RR++++EVP++AI+ V + N+SV+ DE +A RLGLIPL + +
Sbjct: 66 FSLIGVDASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVDGI 125
Query: 233 MAMRFSRDC--DACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDH 379
MR+ + D +G ++ ++ L ++C + D T D +Y+ D
Sbjct: 126 NWMRWFKKATEDDPEGSDPSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYARDI 185
Query: 380 TVVPV----DFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVS 547
T PV F + VN I+I KLR GQ++ L KGIG DHAK+SP AT S
Sbjct: 186 TFHPVGRQEQFFTGEDAIQPVNPDILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATAS 245
Query: 548 FMYEPEIHI 574
+ P+I I
Sbjct: 246 YRLLPDIQI 254
[235][TOP]
>UniRef100_UPI00017F0A34 PREDICTED: RNA polymerase I subunit hRPA39 n=1 Tax=Sus scrofa
RepID=UPI00017F0A34
Length = 346
Score = 110 bits (275), Expect = 9e-23
Identities = 69/195 (35%), Positives = 111/195 (56%), Gaps = 12/195 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD------ 361
LGLIP+ ++ R + D +G E +++F L+V+C + + S D
Sbjct: 110 LGLIPIHAD----PRLFEYRNLGDEEG-TEIDTLQFRLQVRCTRNPSAAKDSSDPNELYV 164
Query: 362 ---LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+Y+ T VP+ D + V+ I+I +LR GQE+ L KGIGKDHAK
Sbjct: 165 NHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAK 224
Query: 524 WSPAATVSFMYEPEI 568
+SP AT S+ P+I
Sbjct: 225 FSPVATASYRLLPDI 239
[236][TOP]
>UniRef100_B4KGY1 GI17014 n=1 Tax=Drosophila mojavensis RepID=B4KGY1_DROMO
Length = 333
Score = 110 bits (275), Expect = 9e-23
Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 13/206 (6%)
Frame = +2
Query: 8 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 187
+++ V +R ++ F+L +IANA RR+M+SEVP++AI+ V I N+S++ DE
Sbjct: 38 SKLQVVIVRNDEEHGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEV 97
Query: 188 IAHRLGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSK 358
+AHR+GL+PL ++ R A R D E ++E+ L+VKC D + D ++
Sbjct: 98 LAHRMGLLPLRADPRLFAYRTDESTDQ-----GTEQDTLEYELKVKCTRRKDASKDQSNF 152
Query: 359 D-------LYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQELRLRAIARKGIG 508
D +YS +P S+S+V ++ I+I +LR G EL LR IA KGIG
Sbjct: 153 DDIYRNHKVYSGHLKWLPKGKQAQIYSESSVGCIHEDILIAQLRPGHELDLRLIAVKGIG 212
Query: 509 KDHAKWSPAATVSFMYEPEIHINDDL 586
KDHAK+SP AT + P+I++ ++
Sbjct: 213 KDHAKFSPVATAYYRLLPQINLTREV 238
[237][TOP]
>UniRef100_A8N510 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N510_COPC7
Length = 356
Score = 110 bits (275), Expect = 9e-23
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 12/197 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
+V+I L F+L DASIANA RR+MI+EVPTIAI+ V + N+SV+ DE +AHR
Sbjct: 47 KVQITRLSQHTIEFDLVGVDASIANAFRRIMIAEVPTIAIEHVYVWDNTSVIVDEVLAHR 106
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETL--DVTSKDLYSS 373
+GL+PL ++ S D D D ++ F L V C + T+ D
Sbjct: 107 IGLVPLNVNPSIMDSRSPQNDPTDRD------TLIFKLDVTCTRNPNAPKGSTNPDELYI 160
Query: 374 DHTVVPVD--FSP--------DTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 523
+H V+ D +SP + + +N I++ KLR GQ + + A KG+GKDHAK
Sbjct: 161 NHEVLSRDLVWSPVGQQAEVFEGCPPAPINPNIVLTKLRPGQAVNMELHAVKGVGKDHAK 220
Query: 524 WSPAATVSFMYEPEIHI 574
++P AT S+ P I I
Sbjct: 221 FTPVATASYRLLPHIKI 237
[238][TOP]
>UniRef100_C8S812 RNA polymerase insert n=1 Tax=Ferroglobus placidus DSM 10642
RepID=C8S812_FERPL
Length = 262
Score = 110 bits (275), Expect = 9e-23
Identities = 71/188 (37%), Positives = 98/188 (52%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
+V+I ++ +F L+D+D ANA RR M S VPT+A+D V+ +N+S+L DE IAHR
Sbjct: 2 KVEILSEEELKIKFILKDSDYVFANAWRRAMKSLVPTLAVDYVDFYLNTSLLYDEIIAHR 61
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH 379
+GLIPL ++ F C C+G+G C C V L V+
Sbjct: 62 IGLIPLKTD-LERYNFQDKC-VCEGEG-CPNCQVSLRLNVE----------------GPK 102
Query: 380 TVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYE 559
TV D PD V I IV+L GQ+L L A+AR G GK+HAK+ P + +
Sbjct: 103 TVYSGDLIPDDPEVKPVYDNIPIVELYEGQQLMLEAVARLGTGKEHAKFQPVSICYYKII 162
Query: 560 PEIHINDD 583
P I I +D
Sbjct: 163 PRIEITED 170
[239][TOP]
>UniRef100_Q5JJF4 DNA-directed RNA polymerase subunit D n=1 Tax=Thermococcus
kodakarensis RepID=RPOD_PYRKO
Length = 259
Score = 110 bits (275), Expect = 9e-23
Identities = 79/199 (39%), Positives = 98/199 (49%)
Frame = +2
Query: 14 MPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 193
M KI E + D +F + D ANALRR ++SEVPT A+D VE N S L DE IA
Sbjct: 1 MVEFKILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIA 60
Query: 194 HRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS 373
HRL +IPLT+ RFS D D ++ + + + V S DL SS
Sbjct: 61 HRLAMIPLTTPHE---RFSLDALELD----------DYTVTLSLEAEGPGMVYSGDLKSS 107
Query: 374 DHTVVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFM 553
D V P N I IVKL GQ L A AR G GKDHAKW P V +
Sbjct: 108 DGDVKP------------ANPNIPIVKLAEGQRLTFNAYARLGRGKDHAKWQP-GFVYYK 154
Query: 554 YEPEIHINDDLMETLTLKE 610
Y +IH++ D+ + LKE
Sbjct: 155 YLTKIHVSKDVPDWEELKE 173
[240][TOP]
>UniRef100_UPI000175846B PREDICTED: similar to CG3756 CG3756-PA n=1 Tax=Tribolium castaneum
RepID=UPI000175846B
Length = 338
Score = 110 bits (274), Expect = 1e-22
Identities = 70/196 (35%), Positives = 113/196 (57%), Gaps = 11/196 (5%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV I +++ F+L +AN RR+M+S+VPT+AI+ V I N+S++ DE +AHR
Sbjct: 44 RVVIVRSEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHILNNTSIIQDEVLAHR 103
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMT--DETLD-VTSKDLY 367
LGLIPL ++ R M+ R +G Q ++EF L++KC D + D + ++D+Y
Sbjct: 104 LGLIPLKADPRLFEMKTDRKSSTAEGTEQ---DTLEFALKIKCTNNKDSSKDSLRAEDMY 160
Query: 368 SSDHTV------VPVDFSPDTSSD-SAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 526
+++ VP+ + SD ++ I+I K+R G EL L+ +A K G+DHAK+
Sbjct: 161 KNNNVYSKHIKWVPIGKQKERFSDVGPIHPDILIAKMRPGHELDLKLLAVKSNGRDHAKF 220
Query: 527 SPAATVSFMYEPEIHI 574
SP AT + P+I +
Sbjct: 221 SPVATAFYRLLPDIKL 236
[241][TOP]
>UniRef100_Q5RJK9 Polymerase (RNA) I polypeptide C n=2 Tax=Rattus norvegicus
RepID=Q5RJK9_RAT
Length = 346
Score = 110 bits (274), Expect = 1e-22
Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + + + F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDESTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R + + + D +++F L+V+C + + S D
Sbjct: 110 LGLIPILADPRLFEYRNPGEEEGTEID------TLQFRLQVRCTRNPSAAKDSSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+Y+ T VP+ D + V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 164 VNHKVYTRHMTWVPLGNQADVFPEGTVRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P+I
Sbjct: 224 KFSPVATASYRLLPDI 239
[242][TOP]
>UniRef100_Q12ZR3 DNA-directed RNA polymerase subunit D n=1 Tax=Methanococcoides
burtonii DSM 6242 RepID=Q12ZR3_METBU
Length = 267
Score = 110 bits (274), Expect = 1e-22
Identities = 74/180 (41%), Positives = 95/180 (52%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+ I EL D A+F L +T A+ AN +RR M+++VPT+AID V I N+SVL DE +A RL
Sbjct: 3 IDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLALRL 62
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHT 382
GLIPLT+ + +D CDG G C C+V L V+ V S D+ SSD
Sbjct: 63 GLIPLTT--SFDDFVPQDKCTCDGAG-CPACTVSLTLSVETDESGQTIVHSGDIVSSDPN 119
Query: 383 VVPVDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEP 562
V P D K I I+ LR GQ++ L AIA G G HAKW + P
Sbjct: 120 VQPAD------------KNIPIIDLRVGQKVVLEAIAHMGYGNKHAKWQAGVACGYKIMP 167
[243][TOP]
>UniRef100_UPI000023F302 hypothetical protein FG00365.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F302
Length = 381
Score = 109 bits (273), Expect = 2e-22
Identities = 70/198 (35%), Positives = 105/198 (53%), Gaps = 18/198 (9%)
Frame = +2
Query: 50 MARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 229
++ F L DAS+ANA RR+++SE+PT+A++ V IE N+SV+ DE +AHRLGLIP R
Sbjct: 70 LSSFSLVGIDASLANAFRRILLSEIPTLAVENVYIENNTSVIQDEVLAHRLGLIPFKGGR 129
Query: 230 A---MAMRFSRDCDACDGD--GQCEFCSVEFHLRVKCMTDETLDVTSKD---------LY 367
+++ + +A D G ++ +V L V C +E T D +Y
Sbjct: 130 EGLHNFLKWHKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEDASPTENDPLKAYHNAHVY 189
Query: 368 SSDHTVVP----VDFSPDTSSDSAVNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 535
+ D VP ++ ++ + N I+I KLR Q + L KGIG DHAK+SP
Sbjct: 190 ARDIVFVPTGRQAEYFSGENAIAPTNPDILIAKLRPRQTINLAMHMHKGIGSDHAKFSPV 249
Query: 536 ATVSFMYEPEIHINDDLM 589
AT S+ P I I ++
Sbjct: 250 ATASYRLLPTITITQPIL 267
[244][TOP]
>UniRef100_B9S9W7 DNA-directed RNA polymerase I/III subunits, putative n=1
Tax=Ricinus communis RepID=B9S9W7_RICCO
Length = 374
Score = 109 bits (273), Expect = 2e-22
Identities = 77/223 (34%), Positives = 112/223 (50%), Gaps = 27/223 (12%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
+V++ +L D F++ DA+IANA RR++ISE+PT+AI+ V I N+S++ DE +AHR
Sbjct: 76 KVEVIQLTKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEVLAHR 135
Query: 200 LGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH 379
LGLIP+ ++ + S + D E ++ F L C E + +YS +
Sbjct: 136 LGLIPINADPRLFEYLSAN------DTPNEKNTIVFKLHASCKRGE----PRRTVYSEEL 185
Query: 380 TVVP-----------VDFSPDTSSD------------SAVNKGIIIVKLRRGQELRLRAI 490
+P D P T + S II+ KL GQE+ L A
Sbjct: 186 KWLPGGSQLLKESEKADSKPSTYTSFTDKQDFIPKPVSPSEDKIIVAKLGPGQEIELEAH 245
Query: 491 ARKGIGKDHAKWSPAATVSFMYEPEI----HINDDLMETLTLK 607
A KG+GK HAKWSP AT + PE+ I D++ E LT K
Sbjct: 246 AVKGLGKTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEELTKK 288
[245][TOP]
>UniRef100_B7Q825 Transferase, putative n=1 Tax=Ixodes scapularis RepID=B7Q825_IXOSC
Length = 344
Score = 109 bits (273), Expect = 2e-22
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 16/214 (7%)
Frame = +2
Query: 5 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 184
+ R ++ I L D F++ + +IANA+RR++++EVPT+A D V + N+S++ DE
Sbjct: 42 FERNFQIGIVSLDDMTMEFDMIGVNPAIANAIRRILLAEVPTMAPDKVFMYNNTSIVQDE 101
Query: 185 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETL--DVTSK 358
+AHR+GL+P + M +D + D +VEF L+VKC + D T+
Sbjct: 102 VLAHRIGLVPFNIDPRMFDYREKDSEGSPED------TVEFELKVKCTRNPQAPKDATTP 155
Query: 359 DLYSSDHTV-------VPVDFSPD---TSSDSAVNKGIIIVKLRRGQELRLRAIARKGIG 508
D DH V P+ + V II+ KLR GQE+ L+ KG G
Sbjct: 156 DELYKDHVVYTRHLTWTPIGSQAEIFGNKPPKPVYDDIILAKLRPGQEIDLKLHCMKGTG 215
Query: 509 KDHAKWSPAATVSFMYEPEI----HINDDLMETL 598
+DHAK+SP AT S+ PEI + D+ E L
Sbjct: 216 QDHAKFSPVATASYRLLPEIVLLREVRDEQAERL 249
[246][TOP]
>UniRef100_Q5JTE4 Polymerase (RNA) I polypeptide C, 30kDa n=1 Tax=Homo sapiens
RepID=Q5JTE4_HUMAN
Length = 314
Score = 109 bits (273), Expect = 2e-22
Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R D + + D +++F L+V+C + S D
Sbjct: 110 LGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+Y+ T +P+ D + V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 164 VNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P+I
Sbjct: 224 KFSPVATASYRLLPDI 239
[247][TOP]
>UniRef100_A7TDY1 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TDY1_VANPO
Length = 335
Score = 109 bits (273), Expect = 2e-22
Identities = 70/200 (35%), Positives = 107/200 (53%), Gaps = 12/200 (6%)
Frame = +2
Query: 23 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 202
+ I + A F+L + D SIANA RR+MISEVP++A++ V N+SVL DE +AHR+
Sbjct: 42 INISSINSREANFDLINIDTSIANAFRRIMISEVPSVAVEYVYFLNNTSVLQDEVLAHRI 101
Query: 203 GLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKC---------MTDETLDVTS 355
GL+PL + M D + + + + ++ L VKC TD + +
Sbjct: 102 GLVPLKVDPDMLSWI--DSELPEEEKFTDENTIVLSLNVKCTMNPDAPKDCTDPKILYKN 159
Query: 356 KDLYSSDHTVVPVDFSPDTSSDSAV---NKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 526
++Y+ D P ++ ++ V N I++ KLR GQE+ L+A GIG DHAK+
Sbjct: 160 SNVYARDLKFEPQGKQVESFANYPVVPANPDILLCKLRPGQEISLKAHCILGIGSDHAKF 219
Query: 527 SPAATVSFMYEPEIHINDDL 586
SP AT S+ P I+I +
Sbjct: 220 SPVATASYRLMPHINITQPI 239
[248][TOP]
>UniRef100_P52432 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Mus
musculus RepID=RPAC1_MOUSE
Length = 346
Score = 109 bits (273), Expect = 2e-22
Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + ++ +D F++ DA+IANA RR++++ VPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVGVVQMDEDTLEFDMVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R + + + D +++F L+V+C + S D
Sbjct: 110 LGLIPILADPRLFEYRNQGEEEGTEID------TLQFRLQVRCTRNPNAAKDSSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+Y+ T VP+ D + V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 164 VNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P I
Sbjct: 224 KFSPVATASYRLLPAI 239
[249][TOP]
>UniRef100_O15160-2 Isoform 2 of DNA-directed RNA polymerases I and III subunit RPAC1
n=1 Tax=Homo sapiens RepID=O15160-2
Length = 342
Score = 109 bits (273), Expect = 2e-22
Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R D + + D +++F L+V+C + S D
Sbjct: 110 LGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+Y+ T +P+ D + V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 164 VNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P+I
Sbjct: 224 KFSPVATASYRLLPDI 239
[250][TOP]
>UniRef100_O15160 DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Homo
sapiens RepID=RPAC1_HUMAN
Length = 346
Score = 109 bits (273), Expect = 2e-22
Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 13/196 (6%)
Frame = +2
Query: 20 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 199
RV + + ++ F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 200 LGLIPLTSE-RAMAMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD----- 361
LGLIP+ ++ R R D + + D +++F L+V+C + S D
Sbjct: 110 LGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query: 362 ----LYSSDHTVVPVDFSPDTSSDSA---VNKGIIIVKLRRGQELRLRAIARKGIGKDHA 520
+Y+ T +P+ D + V+ I+I +LR GQE+ L KGIGKDHA
Sbjct: 164 VNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHA 223
Query: 521 KWSPAATVSFMYEPEI 568
K+SP AT S+ P+I
Sbjct: 224 KFSPVATASYRLLPDI 239