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[1][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 209 bits (531), Expect = 2e-52
Identities = 105/125 (84%), Positives = 115/125 (92%)
Frame = -1
Query: 574 HINDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKP 395
HIN+DLME+LTL+EKKEWV+S PT VFDID TQ+V V + E YSYDDEVI KAEAMGKP
Sbjct: 194 HINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSYDDEVIKKAEAMGKP 253
Query: 394 GLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGA 215
GL+EITAKQDSFIF VE+TGAVKASQL+LN+IEILKQKLDAVRLSEDTVEADDQFGELGA
Sbjct: 254 GLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSEDTVEADDQFGELGA 313
Query: 214 HMRGG 200
HMRGG
Sbjct: 314 HMRGG 318
[2][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 204 bits (520), Expect = 3e-51
Identities = 101/125 (80%), Positives = 115/125 (92%)
Frame = -1
Query: 574 HINDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKP 395
HIN+DLME+LTL+EK WVES PT VFDIDA++Q+V V +AE Y+YDDEV+ KAEAMGKP
Sbjct: 194 HINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKP 253
Query: 394 GLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGA 215
GLVEI AK+DSFIF VE+TGA+KASQLVLNAI++LKQKLDAVRLSEDTVEADDQFGELGA
Sbjct: 254 GLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGA 313
Query: 214 HMRGG 200
HMRGG
Sbjct: 314 HMRGG 318
[3][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 204 bits (520), Expect = 3e-51
Identities = 101/125 (80%), Positives = 115/125 (92%)
Frame = -1
Query: 574 HINDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKP 395
HIN+DLME+LTL+EK WVES PT VFDIDA++Q+V V +AE Y+YDDEV+ KAEAMGKP
Sbjct: 194 HINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKP 253
Query: 394 GLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGA 215
GLVEI AK+DSFIF VE+TGA+KASQLVLNAI++LKQKLDAVRLSEDTVEADDQFGELGA
Sbjct: 254 GLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGA 313
Query: 214 HMRGG 200
HMRGG
Sbjct: 314 HMRGG 318
[4][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 201 bits (511), Expect = 3e-50
Identities = 100/125 (80%), Positives = 113/125 (90%)
Frame = -1
Query: 574 HINDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKP 395
HIN+DLME+L+L+EK+ WVES PT VFDID NTQ+V V + E Y+YD+EVI KAE+MGKP
Sbjct: 194 HINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYDEEVIKKAESMGKP 253
Query: 394 GLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGA 215
GLV I AK+DSFIF VE+TGA+KASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGA
Sbjct: 254 GLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGA 313
Query: 214 HMRGG 200
HMRGG
Sbjct: 314 HMRGG 318
[5][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 192 bits (487), Expect = 2e-47
Identities = 97/123 (78%), Positives = 108/123 (87%)
Frame = -1
Query: 574 HINDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKP 395
HIN+DLMETLTL+EK W+ES PT VFDID TQ+V V + E Y+YDDEVI KAEAMGK
Sbjct: 199 HINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPEAYTYDDEVIKKAEAMGKR 258
Query: 394 GLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGA 215
GL++I AK+DSFIF VE+TGAVKASQLVLNAIEILKQKLDAVRLS+DTVEADDQFGELG
Sbjct: 259 GLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSDDTVEADDQFGELGV 318
Query: 214 HMR 206
HMR
Sbjct: 319 HMR 321
[6][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 185 bits (469), Expect = 2e-45
Identities = 91/125 (72%), Positives = 109/125 (87%)
Frame = -1
Query: 574 HINDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKP 395
HIN+ LMETLTL+EK+EW++S PT VF++D +Q+V V + E Y+YD+EV+ KAEAMGKP
Sbjct: 198 HINEALMETLTLEEKQEWIDSSPTKVFELDPVSQQVVVVDPEAYTYDEEVLKKAEAMGKP 257
Query: 394 GLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGA 215
GLVEI +K+DSFIF VE+TGA+KASQ+ LNAIEILK KLDAVRLS DT EADDQFGELGA
Sbjct: 258 GLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDAVRLSFDTEEADDQFGELGA 317
Query: 214 HMRGG 200
HMRGG
Sbjct: 318 HMRGG 322
[7][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 177 bits (450), Expect = 4e-43
Identities = 89/124 (71%), Positives = 108/124 (87%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPG 392
IN+D+M+TL+ +EK + +ES PT VF +D T++V V + E Y+YD+EVI KAEAMGKPG
Sbjct: 196 INEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKPG 255
Query: 391 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAH 212
L+EI+ K DSFIF VE+TGAVKASQLVLNAI++LKQKLDAVRLS+DTVEADDQFGELGAH
Sbjct: 256 LIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAH 315
Query: 211 MRGG 200
MRGG
Sbjct: 316 MRGG 319
[8][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 177 bits (450), Expect = 4e-43
Identities = 89/124 (71%), Positives = 108/124 (87%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPG 392
IN+D+M+TL+ +EK + +ES PT VF +D T++V V + E Y+YD+EVI KAEAMGKPG
Sbjct: 196 INEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKPG 255
Query: 391 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAH 212
L+EI+ K DSFIF VE+TGAVKASQLVLNAI++LKQKLDAVRLS+DTVEADDQFGELGAH
Sbjct: 256 LIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAH 315
Query: 211 MRGG 200
MRGG
Sbjct: 316 MRGG 319
[9][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 169 bits (429), Expect = 1e-40
Identities = 86/124 (69%), Positives = 104/124 (83%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPG 392
IN+++M TLT +EK + +ES PT VF ID T +V V + E Y+YD+EVI KAEAMGKPG
Sbjct: 196 INEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTYDEEVIKKAEAMGKPG 255
Query: 391 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAH 212
L+EI K DSF+F VE+TGA+KASQLVLNAI+ILKQKLDA+RLS++TVEADDQFGELGAH
Sbjct: 256 LIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSDNTVEADDQFGELGAH 315
Query: 211 MRGG 200
MR G
Sbjct: 316 MREG 319
[10][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 163 bits (413), Expect = 8e-39
Identities = 82/124 (66%), Positives = 101/124 (81%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPG 392
IN++LMETLTL+EK+ VES PT VF+ID NTQ+V V +AE Y+YDDEVI KA+AMGKPG
Sbjct: 211 INEELMETLTLEEKRNLVESSPTKVFNIDPNTQQVVVEDAEAYTYDDEVIKKADAMGKPG 270
Query: 391 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAH 212
L+EI AK+DSFIF VETTGA+ A +L++NAI +L+QKLDAVRL +D D GELGAH
Sbjct: 271 LIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQDD----DADLGELGAH 326
Query: 211 MRGG 200
+ GG
Sbjct: 327 LVGG 330
[11][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 145 bits (367), Expect = 2e-33
Identities = 75/123 (60%), Positives = 96/123 (78%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPG 392
IN++LMETLT++E+ +ES PT VF++D+ Q V V AE Y+YDDEVI AEA+GKPG
Sbjct: 210 INEELMETLTVEERISLIESSPTKVFELDSANQ-VVVKNAEAYTYDDEVIKHAEAIGKPG 268
Query: 391 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAH 212
LVEITAK+DSF+F VETTGA+ A +L++NAI +L+QKLDAVRL +D D GELGAH
Sbjct: 269 LVEITAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVRLQDD----DGDLGELGAH 324
Query: 211 MRG 203
+ G
Sbjct: 325 LGG 327
[12][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 145 bits (366), Expect = 2e-33
Identities = 75/123 (60%), Positives = 95/123 (77%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPG 392
IN++LMETLT++E++ +ES PT VF +D+ Q V V AE Y+YDDEVI AEA+GKPG
Sbjct: 210 INEELMETLTVEERRRLIESSPTKVFKLDSANQ-VVVDNAEAYTYDDEVIKHAEALGKPG 268
Query: 391 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAH 212
LVEI AK+DSFIF VETTGA+ A +L++NAI +L+QKLDAVRL +D D GELGAH
Sbjct: 269 LVEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQDD----DGDLGELGAH 324
Query: 211 MRG 203
+ G
Sbjct: 325 LGG 327
[13][TOP]
>UniRef100_B9GHC8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9GHC8_POPTR
Length = 87
Score = 119 bits (297), Expect = 2e-25
Identities = 60/85 (70%), Positives = 73/85 (85%)
Frame = -1
Query: 469 VYVHEAENYSYDDEVINKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEIL 290
V V + E Y+ DD+VI KAEA GKPG+++I AK+D+F+FIV +TGA+KASQLVL+AIEIL
Sbjct: 1 VVVLDPEAYTNDDKVIKKAEAKGKPGIIDIRAKEDNFVFIVGSTGAIKASQLVLDAIEIL 60
Query: 289 KQKLDAVRLSEDTVEADDQFGELGA 215
KQKLDAVRLS+D VEADDQF EL A
Sbjct: 61 KQKLDAVRLSDDIVEADDQFDELSA 85
[14][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 108 bits (270), Expect = 3e-22
Identities = 55/111 (49%), Positives = 80/111 (72%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPG 392
IN+DLM TLT +EK ++VES PT VF + T+KV V+ E+Y+YD E + AE MGKPG
Sbjct: 214 INEDLMATLTEEEKIKFVESSPTPVFRYNDQTRKVEVNMPESYTYDGECLKWAEDMGKPG 273
Query: 391 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEAD 239
LV+I AK+D+F+F VE+TGA+ +VLNA+++L KL+ + D V+++
Sbjct: 274 LVDIRAKEDTFLFTVESTGALPPETIVLNALKVLDTKLEMTKSELDIVKSE 324
[15][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 104 bits (259), Expect = 6e-21
Identities = 52/114 (45%), Positives = 81/114 (71%), Gaps = 3/114 (2%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVH---EAENYSYDDEVINKAEAMG 401
IN++LM TLT +EK +VES PT +F D T++V V +A +Y YD E + KAE +G
Sbjct: 213 INEELMATLTEEEKMAFVESSPTALFRYDEATRRVVVDAPDQARSYGYDGECLKKAEELG 272
Query: 400 KPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEAD 239
KPGLV+I AK+D+F F VE+TGA++ ++V+NA+++L++K++ R D +E +
Sbjct: 273 KPGLVDIRAKEDAFHFTVESTGALRPEEIVVNALKVLERKMEVTRGELDILERE 326
[16][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 86.3 bits (212), Expect = 2e-15
Identities = 42/113 (37%), Positives = 71/113 (62%)
Frame = -1
Query: 574 HINDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKP 395
H+N +L++TL+ +K+ VES P+ +F DA+ + + + ++D E++ K MGK
Sbjct: 188 HVNQELLKTLSGSDKRAIVESDPSQMFKYDADLDTISLTSTGSCTFDGEIVKKVNEMGKH 247
Query: 394 GLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADD 236
GL++I DSF F VE+TG + A ++VL A+ IL+ KLD V D +E+++
Sbjct: 248 GLIDIRPCFDSFTFHVESTGVLDAEEIVLQAVHILQTKLDTVGGELDMIESEN 300
[17][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 84.0 bits (206), Expect = 8e-15
Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDAN--TQKVYVHEAENYSYDDEVINKAEAMGK 398
+N + ++ LT ++K+EWV SCPT V+ + TQ+V + + Y E KAE+ GK
Sbjct: 191 LNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLECKKKAESFGK 250
Query: 397 PGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVR 266
P LV + KQD FIF VE++GA+K +VL AI+I+K+KL ++
Sbjct: 251 PDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294
[18][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 79.7 bits (195), Expect = 1e-13
Identities = 39/92 (42%), Positives = 58/92 (63%)
Frame = -1
Query: 535 EKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPGLVEITAKQDSFI 356
EK VES P+ +F DA+T + E+ +YD EV+ K +GKPGL+++ D F
Sbjct: 218 EKAAIVESDPSKMFKYDADTDTFTLTSPESCTYDGEVMKKVNELGKPGLIDVRPGLDCFT 277
Query: 355 FIVETTGAVKASQLVLNAIEILKQKLDAVRLS 260
FIVE+TG +K ++VL A+ IL+ KLD + +S
Sbjct: 278 FIVESTGVLKVEEVVLQAVHILQSKLDTIGVS 309
[19][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 79.3 bits (194), Expect = 2e-13
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 14/121 (11%)
Frame = -1
Query: 574 HINDDLMETLTLKEKKEWVESCP--------------THVFDIDANTQKVYVHEAENYSY 437
+IN++ ME LTL EK+ WVES VF +D T KV V Y+
Sbjct: 211 YINEEKMEALTLAEKQNWVESSLDLPQNQSFPVPATLVKVFKLDPATSKVMVVSPGAYT- 269
Query: 436 DDEVINKAEAMGKPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSE 257
E+ EA G LVEI + DSFIF VE+TGA+ +++ ++A+ ILK+KL A+R++E
Sbjct: 270 SQELQRNVEAAGMAELVEIAWRDDSFIFSVESTGAIAPAKICVDAVNILKKKLLALRIAE 329
Query: 256 D 254
D
Sbjct: 330 D 330
[20][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
Length = 308
Score = 70.5 bits (171), Expect = 9e-11
Identities = 40/107 (37%), Positives = 69/107 (64%)
Frame = -1
Query: 553 ETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPGLVEITA 374
++L+L EK+ +SCP +VF +DAN Q + V+ E + +E I AE+M KP L+++
Sbjct: 202 QSLSLFEKQSIRDSCPMNVFAMDAN-QDLIVNAIEKCVFCEECIRCAESMKKPRLIKMQH 260
Query: 373 KQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQ 233
K++ +IF VE+ G +KA+ +V A+ +L++K+D +S+D A Q
Sbjct: 261 KKNKYIFTVESAGQLKAADIVQKALIVLRKKVD--EISQDLSFAQQQ 305
[21][TOP]
>UniRef100_A0CLS1 Chromosome undetermined scaffold_204, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0CLS1_PARTE
Length = 297
Score = 70.5 bits (171), Expect = 9e-11
Identities = 40/107 (37%), Positives = 69/107 (64%)
Frame = -1
Query: 553 ETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPGLVEITA 374
++L+L EK+ +SCP +VF +DAN Q + V+ E + +E I AE+M KP L+++
Sbjct: 191 QSLSLFEKQSIRDSCPMNVFAMDAN-QDLIVNAIEKCVFCEECIRCAESMKKPRLIKMQH 249
Query: 373 KQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQ 233
K++ +IF VE+ G +KA+ +V A+ +L++K+D +S+D A Q
Sbjct: 250 KKNKYIFTVESAGQLKAADIVQKALIVLRKKVD--EISQDLSFAQQQ 294
[22][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
RepID=CNJC_TETTH
Length = 310
Score = 70.5 bits (171), Expect = 9e-11
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINK-AEAMGKP 395
I D ++ L +++KK V +CPT VF I+ +T + V + Y +E + K AE KP
Sbjct: 192 IFDQEIQNLDIEQKKALVNACPTKVFGINPHTNTLEVQDHMKCMYCEECVYKCAEDFQKP 251
Query: 394 GLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVR 266
L++I K+D F F VETTG +K +++ L+QKLD +R
Sbjct: 252 KLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMR 294
[23][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G229_PHATR
Length = 320
Score = 68.9 bits (167), Expect = 3e-10
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
Frame = -1
Query: 574 HINDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEA--ENYSYDDEVINKAEAMG 401
HIND+ M TLTL++K+E V++CP + ++D T + + + +Y +++ AM
Sbjct: 203 HINDEQMATLTLEQKQELVDTCPDRILELDEVTGDIRAVDNAWDICTYTEDLKFAQAAMK 262
Query: 400 K----PGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLD 275
K V +T +D FIF VETTGA+ A +++L+AI +L+ +L+
Sbjct: 263 KRPEDDDFVTVTQSKDRFIFNVETTGAMDADEILLSAIRVLRNRLN 308
[24][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
dispar SAW760 RepID=B0EHR6_ENTDI
Length = 283
Score = 66.6 bits (161), Expect = 1e-09
Identities = 35/97 (36%), Positives = 55/97 (56%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPG 392
IND+ M +LT ++K+ + E CP VFD +KV++ EN + +E A +G+
Sbjct: 175 INDEKMISLTPEQKRTFCEQCPQKVFDYQEVGEKVFIRGDENCIFCNECTVYARDIGQRN 234
Query: 391 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQK 281
LV +T K D F+F VE TG Q++ +E +K+K
Sbjct: 235 LVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKK 271
[25][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
histolytica HM-1:IMSS RepID=C4M554_ENTHI
Length = 283
Score = 65.9 bits (159), Expect = 2e-09
Identities = 34/97 (35%), Positives = 55/97 (56%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPG 392
IND+ M +LT ++K+ + E CP +FD +KV++ EN + +E A +G+
Sbjct: 175 INDEKMISLTPEQKRTFCEQCPQKLFDYQEVGEKVFIRGEENCIFCNECTVYARDIGQRN 234
Query: 391 LVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQK 281
LV +T K D F+F VE TG Q++ +E +K+K
Sbjct: 235 LVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKK 271
[26][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
Length = 351
Score = 63.9 bits (154), Expect = 8e-09
Identities = 40/98 (40%), Positives = 54/98 (55%)
Frame = -1
Query: 547 LTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPGLVEITAKQ 368
+T K+ KE+VE CP +VFDI+ T KVYV N + I K P VEI +
Sbjct: 255 ITGKDAKEFVEVCPMNVFDIEDITGKVYVKNPRNCTTCRACIEKF-----PKKVEIFKNK 309
Query: 367 DSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSED 254
FIF +E+TG++ QLV AI IL++K + S D
Sbjct: 310 HHFIFSIESTGSISPIQLVKTAINILREKSHKINNSID 347
[27][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
Length = 348
Score = 62.8 bits (151), Expect = 2e-08
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDA----------------NTQKVYVHEAENYS 440
IN M ++LK ++E V SCP +VF + A N + V + +
Sbjct: 192 INQSSMTNVSLKHRREIVNSCPKNVFGLSASKSEFGMFDKPVEKSTNIPDIEVLNSSDCI 251
Query: 439 YDDEVINKAEAMG--KPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKL 278
+ +E +N +G P L+ + K D F F+VE+TGA+ A Q++ A+EIL++KL
Sbjct: 252 FCNECVNTCRNLGYINPPLIRVDTKPDKFHFVVESTGAMPAEQIIEMALEILQEKL 307
[28][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
Length = 275
Score = 62.4 bits (150), Expect = 2e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = -1
Query: 556 METLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPGLVEIT 377
M +T EK+ +V S P+ F + T+ + V E+Y YD+E + KA +G+P LV I
Sbjct: 194 MADMTDDEKQAFVHSDPSKTFKFNPITRMIEVENEESYMYDEECVVKARELGRPDLVTIR 253
Query: 376 AKQDSFIFIVETTGAVKASQLV 311
QD FIF VE TG ++ +V
Sbjct: 254 QVQDHFIFRVEGTGVLEVKSIV 275
[29][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
RepID=Q5CNH1_CRYHO
Length = 355
Score = 61.6 bits (148), Expect = 4e-08
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 24/148 (16%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYD-------------- 434
IN L LTLK++KE V CP VF + NT K +N +Y
Sbjct: 193 INYSLSSNLTLKQRKEIVNCCPKDVFALGGNTSKTEYALNKNSTYSTKTKTEELPDLEVV 252
Query: 433 --------DEVINKAEAMG--KPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQ 284
+E +N + G P L+ + K D F F+VE+TGA+ +V A EIL++
Sbjct: 253 SSKSCIFCNECVNLTKNYGYINPALIRVDTKPDKFHFLVESTGALPVESIVELAFEILQE 312
Query: 283 KLDAVRLSEDTVEADDQFGELGAHMRGG 200
KL+ LS ++ L + GG
Sbjct: 313 KLNT--LSRGVARSETAQSGLDTNGSGG 338
[30][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5LCN7_9ALVE
Length = 336
Score = 59.7 bits (143), Expect = 2e-07
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = -1
Query: 553 ETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKP-GLVEIT 377
E L++ E+K V SCP V D+DA ++ V + + DE + KA K G++ +
Sbjct: 211 EKLSVAERKAIVRSCPKRVLDLDA-ADRIQVVRKDLCDFCDECVTKANYDFKAKGMITVK 269
Query: 376 AKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGE 224
+ D F VE+TGA +V+ AI++ K+K +RL ED + + +FG+
Sbjct: 270 QRTDVVHFTVESTGARPPEDIVMAAIKVFKEKW--IRLHEDLGKWEQEFGQ 318
[31][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BWN8_THAPS
Length = 297
Score = 59.3 bits (142), Expect = 2e-07
Identities = 32/105 (30%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEA--ENYSYDDEVINKAEAMGK 398
IN++ LTL++K+E VE+CP + ++D T + E E ++ +++ AM K
Sbjct: 193 INEEACNMLTLEQKQELVEACPDRILELDEITGNLVAVENAYEMATFTEDLKTVQNAMKK 252
Query: 397 ----PGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLD 275
V + D F+F VE+TGA+ A +++L+++ +LK +L+
Sbjct: 253 RPEDDDFVNVVQSTDRFVFSVESTGAMDAEEILLSSLRVLKDRLN 297
[32][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CSH3_CRYPV
Length = 355
Score = 58.5 bits (140), Expect = 3e-07
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 24/148 (16%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYD-------------- 434
IN L LTLK++KE V CP VF + +T K +N +Y
Sbjct: 193 INYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSKTEYALNKNSAYSTKTKTEELPDLEVV 252
Query: 433 --------DEVINKAEAMG--KPGLVEITAKQDSFIFIVETTGAVKASQLVLNAIEILKQ 284
+E +N + G P L+ + K D F F+VE+TGA+ +V A EIL++
Sbjct: 253 SSKSCIFCNECVNLTKNYGYINPVLIRVDTKPDKFHFLVESTGALPVESIVELAFEILQE 312
Query: 283 KLDAVRLSEDTVEADDQFGELGAHMRGG 200
KL+ LS ++ L + GG
Sbjct: 313 KLNT--LSRGVARSETAQSGLDTNGSGG 338
[33][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
Length = 363
Score = 58.2 bits (139), Expect = 5e-07
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Frame = -1
Query: 571 INDDLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPG 392
+N D L + +++WVE CP VF D T +V + + + + E + K K
Sbjct: 208 LNPDGFAKLDTEHRRQWVERCPRQVFRYDDRTGQVLLADPDACIFCRECLLKEPPFNKLA 267
Query: 391 --LVEITAKQDS-----FIFIVETTGAVKASQLVLNAIEILKQKLDAVR 266
LV + K+D F F VE+TGA+ Q++ +A+E+L++KL+ VR
Sbjct: 268 EPLVFVRHKKDKRGYHDFTFTVESTGALPVLQILYDAVEVLRRKLERVR 316
[34][TOP]
>UniRef100_C5M6J2 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Candida tropicalis MYA-3404 RepID=C5M6J2_CANTT
Length = 337
Score = 54.3 bits (129), Expect = 7e-06
Identities = 32/99 (32%), Positives = 55/99 (55%)
Frame = -1
Query: 562 DLMETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVINKAEAMGKPGLVE 383
D+ E +T K +++ + P V ID+ T + YV +A + EV+ E GK V+
Sbjct: 236 DIKEPITGKLAEKFQKCFPPGVIGIDSKTGEAYVADARKDTVSREVLRHPEFDGK---VK 292
Query: 382 ITAKQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVR 266
+ ++D FIF VE+TGA+ ++ ++ ILK K + +R
Sbjct: 293 LGRQRDHFIFNVESTGAMTPDEIFCKSVRILKNKAEYLR 331