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[1][TOP]
>UniRef100_B8YLY7 Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA
Length = 1305
Score = 122 bits (305), Expect(2) = 2e-44
Identities = 62/69 (89%), Positives = 64/69 (92%)
Frame = +3
Query: 3 AIDGRPADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLH 182
AIDGRPADITDDK KEMDDNAVANLHLAVADSVLSSIAEKKTAK+IWDTLIQLYEVKSLH
Sbjct: 34 AIDGRPADITDDKRKEMDDNAVANLHLAVADSVLSSIAEKKTAKKIWDTLIQLYEVKSLH 93
Query: 183 NRILKEETL 209
NRI + L
Sbjct: 94 NRIFLKRRL 102
Score = 80.9 bits (198), Expect(2) = 2e-44
Identities = 40/42 (95%), Positives = 40/42 (95%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
FLKRRL T RMSESTSMPDHINNLNTMFAQLSASDFTIGENE
Sbjct: 97 FLKRRLYTFRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 138
[2][TOP]
>UniRef100_B8YLY5 Gag-Pol polyprotein n=1 Tax=Medicago truncatula RepID=B8YLY5_MEDTR
Length = 1305
Score = 124 bits (312), Expect(2) = 1e-40
Identities = 61/69 (88%), Positives = 65/69 (94%)
Frame = +3
Query: 3 AIDGRPADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLH 182
AIDGRPADITD+KWKEMDDNAVANLHLA+ADSVLSSIAEKKTAKEIWDTLI+LYEVKSLH
Sbjct: 34 AIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLH 93
Query: 183 NRILKEETL 209
NRI + L
Sbjct: 94 NRIFLKRRL 102
Score = 65.9 bits (159), Expect(2) = 1e-40
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
FLKRRL TLRM ESTS+ DHIN LNT+F+QL+ASDF I ENE
Sbjct: 97 FLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENE 138
[3][TOP]
>UniRef100_B8YLY4 Gag-Pol polyprotein n=1 Tax=Medicago truncatula RepID=B8YLY4_MEDTR
Length = 1305
Score = 124 bits (312), Expect(2) = 1e-40
Identities = 61/69 (88%), Positives = 65/69 (94%)
Frame = +3
Query: 3 AIDGRPADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLH 182
AIDGRPADITD+KWKEMDDNAVANLHLA+ADSVLSSIAEKKTAKEIWDTLI+LYEVKSLH
Sbjct: 34 AIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLH 93
Query: 183 NRILKEETL 209
NRI + L
Sbjct: 94 NRIFLKRRL 102
Score = 65.9 bits (159), Expect(2) = 1e-40
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
FLKRRL TLRM ESTS+ DHIN LNT+F+QL+ASDF I ENE
Sbjct: 97 FLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENE 138
[4][TOP]
>UniRef100_B8YLY3 Gag-Pol polyprotein n=1 Tax=Medicago truncatula RepID=B8YLY3_MEDTR
Length = 1305
Score = 124 bits (312), Expect(2) = 1e-40
Identities = 61/69 (88%), Positives = 65/69 (94%)
Frame = +3
Query: 3 AIDGRPADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLH 182
AIDGRPADITD+KWKEMDDNAVANLHLA+ADSVLSSIAEKKTAKEIWDTLI+LYEVKSLH
Sbjct: 34 AIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLH 93
Query: 183 NRILKEETL 209
NRI + L
Sbjct: 94 NRIFLKRRL 102
Score = 65.9 bits (159), Expect(2) = 1e-40
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
FLKRRL TLRM ESTS+ DHIN LNT+F+QL+ASDF I ENE
Sbjct: 97 FLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENE 138
[5][TOP]
>UniRef100_B8YLY6 Gag-Pol polyprotein n=1 Tax=Medicago truncatula RepID=B8YLY6_MEDTR
Length = 1305
Score = 120 bits (302), Expect(2) = 1e-38
Identities = 60/69 (86%), Positives = 64/69 (92%)
Frame = +3
Query: 3 AIDGRPADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLH 182
AIDGR ADITD+KWKEMDDNAVANLHLA+ADSVLSSIAEKKTAKEIWDTLI+LYEVKSLH
Sbjct: 34 AIDGRLADITDEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLH 93
Query: 183 NRILKEETL 209
NRI + L
Sbjct: 94 NRIFLKRRL 102
Score = 62.8 bits (151), Expect(2) = 1e-38
Identities = 30/42 (71%), Positives = 36/42 (85%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
FLKRRL TL+M ESTS+ DHIN LNT+F+QL+ASDF I +NE
Sbjct: 97 FLKRRLYTLQMGESTSVTDHINTLNTLFSQLTASDFKIAKNE 138
[6][TOP]
>UniRef100_Q6BCY1 Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA
Length = 1298
Score = 86.7 bits (213), Expect(2) = 2e-24
Identities = 43/70 (61%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Frame = +3
Query: 3 AIDGRPADITDDK-WKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSL 179
AI RP D TDDK W EM+++A+A+L+L++AD VLSSI EKKTA EIWD L +LYE KSL
Sbjct: 34 AISERPVDFTDDKKWSEMNEDAMADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSL 93
Query: 180 HNRILKEETL 209
HN+I + L
Sbjct: 94 HNKIFLKRKL 103
Score = 49.7 bits (117), Expect(2) = 2e-24
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
FLKR+L TLRMSESTS+ +H+N LNT+F+QL++ I E
Sbjct: 98 FLKRKLYTLRMSESTSVTEHLNTLNTLFSQLTSLSCKIEPQE 139
[7][TOP]
>UniRef100_B0B0G3 Gag protein (Fragment) n=1 Tax=Cucumis melo RepID=B0B0G3_CUCME
Length = 122
Score = 98.6 bits (244), Expect = 2e-19
Identities = 55/96 (57%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Frame = +3
Query: 3 AIDGRPADITDD-KWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSL 179
AID RPA+ITDD KW EMD NA+AN+HLA+ D+VLSSI EKK AKEIWD LI+LYE KSL
Sbjct: 10 AIDKRPAEITDDNKWNEMDGNAMANIHLALVDNVLSSIEEKKIAKEIWDHLIKLYEAKSL 69
Query: 180 HNRILKEETLNSSNE*IHFDAGSHQQSEH-NVCSTI 284
HN+I + L + +GS +EH N +T+
Sbjct: 70 HNKIFLKRKLYTLRM-----SGSTLMTEHMNTLNTL 100
[8][TOP]
>UniRef100_A7PTT7 Chromosome undetermined scaffold_30, whole genome shotgun sequence
n=1 Tax=Vitis vinifera RepID=A7PTT7_VITVI
Length = 192
Score = 79.7 bits (195), Expect(2) = 6e-19
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = +3
Query: 6 IDGRPADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLHN 185
I R ++ D KW++MD N VANLHL VA+S+LSSI+E ++ KEIWDTL LY+ K LHN
Sbjct: 35 ISERLENVEDKKWEQMDGNVVANLHLVVANSILSSISELQSTKEIWDTLTNLYDAKLLHN 94
Query: 186 RILKEETL 209
+I + L
Sbjct: 95 KIFLKRKL 102
Score = 37.7 bits (86), Expect(2) = 6e-19
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLS 285
FLKR+L L+M EST + +HI+ L T+F+QLS
Sbjct: 97 FLKRKLYALQMLESTLVIEHISTLKTLFSQLS 128
[9][TOP]
>UniRef100_Q2AA73 Polyprotein-like, related n=1 Tax=Asparagus officinalis
RepID=Q2AA73_ASPOF
Length = 289
Score = 53.1 bits (126), Expect(2) = 8e-10
Identities = 20/65 (30%), Positives = 40/65 (61%)
Frame = +3
Query: 15 RPADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLHNRIL 194
+P +T++ W +++D A+ + L + + V+ + +KT ++W L LY +KSL NR+L
Sbjct: 36 KPVTMTEEDWNQLEDRALTTIQLCLTNEVMQEVLTEKTTADLWSKLEDLYLMKSLTNRLL 95
Query: 195 KEETL 209
++ L
Sbjct: 96 LKQRL 100
Score = 33.5 bits (75), Expect(2) = 8e-10
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 193 LKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
LK+RL TL MSE T + HI N++ LS D I + +
Sbjct: 96 LKQRLYTLWMSEGTPIKSHIGEFNSVITYLSKIDVKINDED 136
[10][TOP]
>UniRef100_Q2QP15 Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza
sativa Japonica Group RepID=Q2QP15_ORYSJ
Length = 425
Score = 54.3 bits (129), Expect(2) = 3e-08
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +3
Query: 18 PADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLHNRILK 197
P + KW+EM A A + L+++DSV+ + ++KT KEIWD L LY KSL +++
Sbjct: 45 PEKMDAGKWEEMKAQAAATIRLSLSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYL 104
Query: 198 EETL 209
++ L
Sbjct: 105 KQQL 108
Score = 26.9 bits (58), Expect(2) = 3e-08
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENEL 318
+LK++L L+M E + + H++ N + LS D + + ++
Sbjct: 103 YLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDM 145
[11][TOP]
>UniRef100_Q7XEC4 Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza
sativa Japonica Group RepID=Q7XEC4_ORYSJ
Length = 415
Score = 54.7 bits (130), Expect(2) = 1e-07
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +3
Query: 18 PADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLHNRILK 197
P I DKW EM A A + L+++DSV+ + ++K+ KEIWD L L+ KSL +++
Sbjct: 45 PEKIDADKWNEMKAQAAATIRLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYL 104
Query: 198 EETL 209
++ L
Sbjct: 105 KQQL 108
Score = 24.6 bits (52), Expect(2) = 1e-07
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
+LK++L L++ E + + H++ N + LS D + + +
Sbjct: 103 YLKQQLYGLQVQEESDLRKHVDVFNQLVVDLSKLDVKLDDED 144
[12][TOP]
>UniRef100_Q7XUF5 OJ991113_30.13 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XUF5_ORYSJ
Length = 353
Score = 54.3 bits (129), Expect(2) = 9e-07
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = +3
Query: 36 DKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLHNRI-LKEET 206
DKW EM A A + L++ DSV+ + ++KT KEIWD L LY KSL +++ LK+++
Sbjct: 4 DKWDEMKAQAAATIRLSLLDSVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQS 61
Score = 21.9 bits (45), Expect(2) = 9e-07
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
+LK++ L+M E + + H++ N + L D + + +
Sbjct: 56 YLKQQSYGLQMQEESDLRKHVDIFNQLVVDLRKLDVKLDDED 97
[13][TOP]
>UniRef100_Q8H023 Putative retrovirus-related pol polyprotein n=1 Tax=Oryza sativa
Japonica Group RepID=Q8H023_ORYSJ
Length = 556
Score = 49.7 bits (117), Expect(2) = 1e-06
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +3
Query: 18 PADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSLHNRILK 197
P + KW EM A A + L+++D V+ + ++KT KEIWD L LY KSL +++
Sbjct: 176 PEKMDVGKWVEMKAQATAIIRLSLSDFVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYL 235
Query: 198 EETL 209
++ L
Sbjct: 236 KQQL 239
Score = 26.2 bits (56), Expect(2) = 1e-06
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
+LK++L L+M E + + H++ N + LS D + + +
Sbjct: 234 YLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDED 275
[14][TOP]
>UniRef100_UPI0001983CB6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001983CB6
Length = 1328
Score = 41.2 bits (95), Expect(2) = 4e-06
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +3
Query: 3 AIDGR---PADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVK 173
AI+G P +T + +E+ A + + L++AD VL +A++ TA +W L Y+ K
Sbjct: 36 AIEGEEKLPVGLTAAEKEEVVSRAHSAILLSLADEVLREVADETTAVGLWRKLESKYQKK 95
Query: 174 SLHNRILKEETLNS 215
SL NR+ ++ L++
Sbjct: 96 SLTNRLYQKRRLHT 109
Score = 32.7 bits (73), Expect(2) = 4e-06
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
+ KRRL TL+MSE + DH +N N + L+ + E +
Sbjct: 102 YQKRRLHTLKMSEGMQVRDHFDNFNRIILDLNGVGVKVEEED 143
[15][TOP]
>UniRef100_A5BPE6 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5BPE6_VITVI
Length = 950
Score = 39.3 bits (90), Expect(2) = 7e-06
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = +3
Query: 3 AIDGR---PADITDDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVK 173
AI+G P +T + +E+ A + + L++AD VL +A++ TA +W Y+ K
Sbjct: 36 AIEGEETLPVGLTAVEKEEVVSRAHSAILLSLADEVLREVADETTAVGLWRKFESKYQKK 95
Query: 174 SLHNRILKEETLNS 215
SL NR+ ++ L++
Sbjct: 96 SLTNRLYQKRQLHT 109
Score = 33.9 bits (76), Expect(2) = 7e-06
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 190 FLKRRL*TLRMSESTSMPDHINNLNTMFAQLSASDFTIGENE 315
+ KR+L TL+MSE + DH+NN N + L+ + E +
Sbjct: 102 YQKRQLHTLKMSEGMQVRDHLNNFNRIILDLNGVGVKVEEED 143