[UP]
[1][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 151 bits (381), Expect = 2e-35
Identities = 77/83 (92%), Positives = 80/83 (96%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
MEG SYARMPRVKIRELKDD +FELRDTDAS+ANALRRVMISEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 212 VLNDEFIAHRLGLIPLTSERAMA 280
VLNDEFIAHRLGLIPLTSERAMA
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMA 83
[2][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 144 bits (364), Expect = 2e-33
Identities = 72/83 (86%), Positives = 80/83 (96%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
MEGVSY R P++KIRE+KDD A+FELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 212 VLNDEFIAHRLGLIPLTSERAMA 280
VLNDEFIAHRLGLIPLTSERAMA
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMA 83
[3][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 144 bits (363), Expect = 3e-33
Identities = 72/83 (86%), Positives = 78/83 (93%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
MEG SY R PR+KIRELKDD +FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 212 VLNDEFIAHRLGLIPLTSERAMA 280
VLNDEFIAHRLGLIPLTSERAM+
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMS 83
[4][TOP]
>UniRef100_Q45NH1 DNA-directed RNA polymerase II third largest subunit (Fragment) n=1
Tax=Medicago sativa RepID=Q45NH1_MEDSA
Length = 184
Score = 144 bits (362), Expect = 4e-33
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YARMPRVKIRELKDD +FELRDTDAS+ANALRRVMISEVPTIAIDLVEIEVNSSVLNDE
Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60
Query: 227 FIAHRLGLIPLTSERAMA 280
FIAHRLGLIPLTSERAMA
Sbjct: 61 FIAHRLGLIPLTSERAMA 78
[5][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 143 bits (361), Expect = 5e-33
Identities = 71/83 (85%), Positives = 80/83 (96%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
MEGVSY R P++KIRE+KDD A+FELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 212 VLNDEFIAHRLGLIPLTSERAMA 280
VLNDEFIAHRLGLIPLTSERAM+
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMS 83
[6][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 140 bits (353), Expect = 4e-32
Identities = 69/83 (83%), Positives = 78/83 (93%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
M+G +Y R P++KIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 212 VLNDEFIAHRLGLIPLTSERAMA 280
VLNDEFIAHRLGLIPLTSERAM+
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMS 83
[7][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 139 bits (351), Expect = 7e-32
Identities = 70/82 (85%), Positives = 77/82 (93%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
ME VSY R P++KIRE+KDD +FELR+TDAS+ANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1 MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 212 VLNDEFIAHRLGLIPLTSERAM 277
VLNDEFIAHRLGLIPLTSERAM
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAM 82
[8][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 139 bits (350), Expect = 1e-31
Identities = 71/81 (87%), Positives = 76/81 (93%)
Frame = +2
Query: 38 GVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 217
GVSY R PRV+IRELKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66
Query: 218 NDEFIAHRLGLIPLTSERAMA 280
NDEFIAHRLGLIPLTS AMA
Sbjct: 67 NDEFIAHRLGLIPLTSAAAMA 87
[9][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 137 bits (345), Expect = 4e-31
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
M+G +Y R P++KIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 212 VLNDEFIAHRLGLIPLTSERAMA 280
VLNDEFIAHRLGLI LTSERAM+
Sbjct: 61 VLNDEFIAHRLGLISLTSERAMS 83
[10][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 136 bits (342), Expect = 8e-31
Identities = 69/80 (86%), Positives = 74/80 (92%)
Frame = +2
Query: 38 GVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 217
G SY R PRV+IRELKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 6 GTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 218 NDEFIAHRLGLIPLTSERAM 277
NDEFIAHRLGLIPLTS AM
Sbjct: 66 NDEFIAHRLGLIPLTSAAAM 85
[11][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 135 bits (339), Expect = 2e-30
Identities = 68/80 (85%), Positives = 74/80 (92%)
Frame = +2
Query: 38 GVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 217
G SY R PRV+IR+LKDD A+FELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVL
Sbjct: 6 GASYQRFPRVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 218 NDEFIAHRLGLIPLTSERAM 277
NDEFIAHRLGLIPLTS AM
Sbjct: 66 NDEFIAHRLGLIPLTSAAAM 85
[12][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 130 bits (328), Expect = 3e-29
Identities = 63/82 (76%), Positives = 75/82 (91%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
M+ VSY R P V+IR++KDD+ +FELRDTDASIANALRR+MI+EVPT+AIDLVEIE NSS
Sbjct: 1 MDNVSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSS 60
Query: 212 VLNDEFIAHRLGLIPLTSERAM 277
VLNDEF+AHRLGLIP+ S+RAM
Sbjct: 61 VLNDEFLAHRLGLIPIVSDRAM 82
[13][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
RepID=A8MR04_ARATH
Length = 235
Score = 130 bits (328), Expect = 3e-29
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
M+GV+Y R P VKIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 212 VLNDEFIAHRLGLIPLTSERAMA 280
VLNDEFIA RL LIPLTSERAM+
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMS 83
[14][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 130 bits (328), Expect = 3e-29
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
M+GV+Y R P VKIRELKDD A+FELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 212 VLNDEFIAHRLGLIPLTSERAMA 280
VLNDEFIA RL LIPLTSERAM+
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMS 83
[15][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 104 bits (260), Expect = 3e-21
Identities = 55/82 (67%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
Frame = +2
Query: 38 GVSYARMPRVKIRELKD--DMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
GVSY R+P V I E ++ RF+L +TD S+AN+LRR M+ EVPT+A DLVEIE+NSS
Sbjct: 17 GVSYHRLPTVSIMESMSSRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSS 76
Query: 212 VLNDEFIAHRLGLIPLTSERAM 277
VL DEFIAHRLGLIPLTS+RAM
Sbjct: 77 VLTDEFIAHRLGLIPLTSDRAM 98
[16][TOP]
>UniRef100_A8PAX3 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Brugia malayi RepID=A8PAX3_BRUMA
Length = 275
Score = 100 bits (250), Expect = 4e-20
Identities = 49/74 (66%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I L D++ RF L DTD S+AN+LRR+ ++EVPT+AID V+IE NSSVL+DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[17][TOP]
>UniRef100_UPI00019253CC PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI00019253CC
Length = 273
Score = 100 bits (249), Expect = 5e-20
Identities = 50/74 (67%), Positives = 61/74 (82%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA PRVKI E DD +F L +TD S+AN+LRR+ I+EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIPLTS+
Sbjct: 63 FIAHRIGLIPLTSD 76
[18][TOP]
>UniRef100_UPI0001925380 PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI0001925380
Length = 289
Score = 100 bits (249), Expect = 5e-20
Identities = 50/74 (67%), Positives = 61/74 (82%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA PRVKI E DD +F L +TD S+AN+LRR+ I+EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIPLTS+
Sbjct: 63 FIAHRIGLIPLTSD 76
[19][TOP]
>UniRef100_C1BV58 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Lepeophtheirus
salmonis RepID=C1BV58_9MAXI
Length = 279
Score = 100 bits (249), Expect = 5e-20
Identities = 47/77 (61%), Positives = 62/77 (80%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P + I EL +D+ +F L DTD S+ANA+RRVMI+E P +AID V++E NS+VL+DE
Sbjct: 3 YANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDE 62
Query: 227 FIAHRLGLIPLTSERAM 277
FIAHRLG+IPLTS+ A+
Sbjct: 63 FIAHRLGMIPLTSDDAV 79
[20][TOP]
>UniRef100_C3Z918 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z918_BRAFL
Length = 275
Score = 99.4 bits (246), Expect = 1e-19
Identities = 46/74 (62%), Positives = 61/74 (82%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P+V + EL D+ +F + DTD S+ANA+RR+ I+EVPT+AID V++E NSSVL+DE
Sbjct: 3 YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIPLTS+
Sbjct: 63 FIAHRVGLIPLTSD 76
[21][TOP]
>UniRef100_UPI0000E4A699 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E4A699
Length = 275
Score = 99.0 bits (245), Expect = 1e-19
Identities = 45/77 (58%), Positives = 62/77 (80%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P +++ EL DD +F + DTD S+AN++RR +++EVPTIAID VEI+ NSSVL+DE
Sbjct: 3 YANQPTIQLTELTDDNVKFIIEDTDLSVANSIRRTILAEVPTIAIDWVEIQANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSERAM 277
FI+HR+GLIPLTS+ +
Sbjct: 63 FISHRVGLIPLTSDEVV 79
[22][TOP]
>UniRef100_Q7ZV11 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Danio
rerio RepID=Q7ZV11_DANRE
Length = 275
Score = 99.0 bits (245), Expect = 1e-19
Identities = 46/74 (62%), Positives = 61/74 (82%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P VKI EL D+ +F + +TD ++AN++RRV +SEVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPLTS+
Sbjct: 63 FVAHRVGLIPLTSD 76
[23][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
Length = 275
Score = 98.6 bits (244), Expect = 2e-19
Identities = 48/76 (63%), Positives = 61/76 (80%)
Frame = +2
Query: 50 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 229
+R P + +R L+ D FEL++TD S ANALRR M++EVPTIAIDLVE+E N++VLNDEF
Sbjct: 10 SRKPTISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEF 69
Query: 230 IAHRLGLIPLTSERAM 277
+AHRLGLIPL S A+
Sbjct: 70 LAHRLGLIPLVSRNAV 85
[24][TOP]
>UniRef100_UPI000001AB34 UPI000001AB34 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI000001AB34
Length = 275
Score = 98.2 bits (243), Expect = 2e-19
Identities = 45/74 (60%), Positives = 61/74 (82%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P VKI EL D+ +F + +TD ++AN++RRV +SEVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPLTS+
Sbjct: 63 FVAHRVGLIPLTSD 76
[25][TOP]
>UniRef100_Q4SK90 Chromosome 13 SCAF14566, whole genome shotgun sequence. (Fragment)
n=1 Tax=Tetraodon nigroviridis RepID=Q4SK90_TETNG
Length = 275
Score = 98.2 bits (243), Expect = 2e-19
Identities = 45/74 (60%), Positives = 61/74 (82%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P VKI EL D+ +F + +TD ++AN++RRV +SEVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPLTS+
Sbjct: 63 FVAHRVGLIPLTSD 76
[26][TOP]
>UniRef100_UPI000069DABC DNA-directed RNA polymerase II subunit RPB3 (RNA polymerase II
subunit B3) (RNA polymerase II subunit 3) (DNA-directed
RNA polymerase II subunit C) (DNA-directed RNA
polymerase II 33 kDa polypeptide) (RPB33) (RPB31). n=1
Tax=Xenopus (Silurana) tropicalis RepID=UPI000069DABC
Length = 275
Score = 97.4 bits (241), Expect = 4e-19
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIPLTS+
Sbjct: 63 FIAHRVGLIPLTSD 76
[27][TOP]
>UniRef100_Q6P7Y7 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Xenopus
(Silurana) tropicalis RepID=Q6P7Y7_XENTR
Length = 275
Score = 97.4 bits (241), Expect = 4e-19
Identities = 47/74 (63%), Positives = 61/74 (82%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIPLTS+
Sbjct: 63 FIAHRVGLIPLTSD 76
[28][TOP]
>UniRef100_UPI0000123F31 Hypothetical protein CBG12350 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI0000123F31
Length = 399
Score = 96.7 bits (239), Expect = 7e-19
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P +++ EL +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIP S+
Sbjct: 63 FIAHRMGLIPFLSD 76
[29][TOP]
>UniRef100_Q6IRR3 MGC81245 protein n=1 Tax=Xenopus laevis RepID=Q6IRR3_XENLA
Length = 275
Score = 96.7 bits (239), Expect = 7e-19
Identities = 46/74 (62%), Positives = 61/74 (82%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V++ EL D+ +F + +TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIPLTS+
Sbjct: 63 FIAHRVGLIPLTSD 76
[30][TOP]
>UniRef100_Q29K78 GA20659 n=2 Tax=pseudoobscura subgroup RepID=Q29K78_DROPS
Length = 275
Score = 96.7 bits (239), Expect = 7e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[31][TOP]
>UniRef100_A8XFM5 C. briggsae CBR-RPB-3 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XFM5_CAEBR
Length = 280
Score = 96.7 bits (239), Expect = 7e-19
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P +++ EL +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIP S+
Sbjct: 63 FIAHRMGLIPFLSD 76
[32][TOP]
>UniRef100_UPI000194E98D PREDICTED: hypothetical protein, partial n=1 Tax=Taeniopygia
guttata RepID=UPI000194E98D
Length = 129
Score = 96.3 bits (238), Expect = 9e-19
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[33][TOP]
>UniRef100_UPI00005EAD58 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C, 33kDa n=1 Tax=Monodelphis domestica
RepID=UPI00005EAD58
Length = 275
Score = 96.3 bits (238), Expect = 9e-19
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[34][TOP]
>UniRef100_UPI00003AA556 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
RepID=UPI00003AA556
Length = 275
Score = 96.3 bits (238), Expect = 9e-19
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[35][TOP]
>UniRef100_B5FZ64 Putative DNA directed RNA polymerase II polypeptide C n=1
Tax=Taeniopygia guttata RepID=B5FZ64_TAEGU
Length = 275
Score = 96.3 bits (238), Expect = 9e-19
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[36][TOP]
>UniRef100_Q93338 Protein C36B1.3, partially confirmed by transcript evidence n=1
Tax=Caenorhabditis elegans RepID=Q93338_CAEEL
Length = 282
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P +++ EL +D+ +F L DTD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIP S+
Sbjct: 63 FIAHRMGLIPFISD 76
[37][TOP]
>UniRef100_Q8IP63 RNA polymerase II 33kD subunit, isoform B n=1 Tax=Drosophila
melanogaster RepID=Q8IP63_DROME
Length = 117
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[38][TOP]
>UniRef100_O97183 RNA polymerase II 33kD subunit, isoform A n=1 Tax=Drosophila
melanogaster RepID=O97183_DROME
Length = 275
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[39][TOP]
>UniRef100_B7QL55 RNA polymerase II, subunit POLR2C/RPB3, putative n=1 Tax=Ixodes
scapularis RepID=B7QL55_IXOSC
Length = 274
Score = 96.3 bits (238), Expect = 9e-19
Identities = 47/74 (63%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I EL D+ +F + DTD S+AN+LRRV I+EV T+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[40][TOP]
>UniRef100_B4Q573 GD23930 n=1 Tax=Drosophila simulans RepID=B4Q573_DROSI
Length = 275
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[41][TOP]
>UniRef100_B4P3R0 GE18688 n=1 Tax=Drosophila yakuba RepID=B4P3R0_DROYA
Length = 275
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[42][TOP]
>UniRef100_B4JCX9 GH11119 n=3 Tax=Drosophila RepID=B4JCX9_DROGR
Length = 275
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[43][TOP]
>UniRef100_B4HXA7 GM15286 n=1 Tax=Drosophila sechellia RepID=B4HXA7_DROSE
Length = 275
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[44][TOP]
>UniRef100_B3NAC7 GG23887 n=1 Tax=Drosophila erecta RepID=B3NAC7_DROER
Length = 117
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[45][TOP]
>UniRef100_B3MN19 GF19666 n=1 Tax=Drosophila ananassae RepID=B3MN19_DROAN
Length = 125
Score = 96.3 bits (238), Expect = 9e-19
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[46][TOP]
>UniRef100_Q3T0Q3 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Bos taurus
RepID=RPB3_BOVIN
Length = 275
Score = 96.3 bits (238), Expect = 9e-19
Identities = 46/74 (62%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[47][TOP]
>UniRef100_UPI00006A469F PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 n=1 Tax=Ciona intestinalis
RepID=UPI00006A469F
Length = 277
Score = 95.9 bits (237), Expect = 1e-18
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
+A P V I EL +D +F + DTD S AN++RRV I+EVPT+AID ++IE NSSVLNDE
Sbjct: 3 FANQPTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDE 62
Query: 227 FIAHRLGLIPLTSE 268
F++HR+GLIPLTS+
Sbjct: 63 FLSHRIGLIPLTSD 76
[48][TOP]
>UniRef100_C1BL52 DNA-directed RNA polymerase II 33 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BL52_OSMMO
Length = 275
Score = 95.9 bits (237), Expect = 1e-18
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P VKI EL D+ +F + +TD ++AN++RRV +SEV TIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIPLTS+
Sbjct: 63 FIAHRVGLIPLTSD 76
[49][TOP]
>UniRef100_B4MVQ9 GK15011 n=1 Tax=Drosophila willistoni RepID=B4MVQ9_DROWI
Length = 275
Score = 95.9 bits (237), Expect = 1e-18
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL DD +F L DT+ S+AN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[50][TOP]
>UniRef100_C1BXW0 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Esox lucius
RepID=C1BXW0_ESOLU
Length = 275
Score = 95.1 bits (235), Expect = 2e-18
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P VKI EL D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIPLTS+
Sbjct: 63 FIAHRVGLIPLTSD 76
[51][TOP]
>UniRef100_B5XBM8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5XBM8_SALSA
Length = 275
Score = 95.1 bits (235), Expect = 2e-18
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P VKI EL D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIPLTS+
Sbjct: 63 FIAHRVGLIPLTSD 76
[52][TOP]
>UniRef100_B5X5T8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5X5T8_SALSA
Length = 275
Score = 95.1 bits (235), Expect = 2e-18
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P VKI EL D+ +F + +TD S+AN++RRV +SEV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHR+GLIPLTS+
Sbjct: 63 FIAHRVGLIPLTSD 76
[53][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 95.1 bits (235), Expect = 2e-18
Identities = 49/80 (61%), Positives = 60/80 (75%)
Frame = +2
Query: 35 EGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSV 214
+G R P + ++E+ +D +F L TD SIANALRRV+I+EVPTIAIDLVE+ NSS
Sbjct: 5 DGDPRQRRPNIVVQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSC 64
Query: 215 LNDEFIAHRLGLIPLTSERA 274
L DEFIAHRLGLIPL S +A
Sbjct: 65 LCDEFIAHRLGLIPLVSHKA 84
[54][TOP]
>UniRef100_UPI0000D5785C PREDICTED: similar to DNA-directed RNA polymerase II subunit n=1
Tax=Tribolium castaneum RepID=UPI0000D5785C
Length = 274
Score = 94.7 bits (234), Expect = 3e-18
Identities = 43/74 (58%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I +L DD +F + DTD S+AN++RRV+I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[55][TOP]
>UniRef100_UPI0000DC0B4D polymerase II polypeptide C n=1 Tax=Rattus norvegicus
RepID=UPI0000DC0B4D
Length = 330
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[56][TOP]
>UniRef100_UPI00016D3816 polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Mus
musculus RepID=UPI00016D3816
Length = 302
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[57][TOP]
>UniRef100_Q9DB22 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q9DB22_MOUSE
Length = 275
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[58][TOP]
>UniRef100_Q99M46 Polymerase (RNA) II (DNA directed) polypeptide C n=2 Tax=Murinae
RepID=Q99M46_MOUSE
Length = 275
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[59][TOP]
>UniRef100_Q3UUX3 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q3UUX3_MOUSE
Length = 332
Score = 94.7 bits (234), Expect = 3e-18
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[60][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 94.4 bits (233), Expect = 4e-18
Identities = 48/72 (66%), Positives = 58/72 (80%)
Frame = +2
Query: 53 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 232
R P ++I E+K+D F L +TD S+ANALRRVMI+EVPT+ IDLVE E N+SVL DEFI
Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69
Query: 233 AHRLGLIPLTSE 268
AHRLGLIPL S+
Sbjct: 70 AHRLGLIPLVSD 81
[61][TOP]
>UniRef100_UPI0000D9F160 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 1 n=1 Tax=Macaca mulatta RepID=UPI0000D9F160
Length = 257
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPL S+
Sbjct: 63 FIAHRLGLIPLISD 76
[62][TOP]
>UniRef100_Q4R533 Brain cDNA, clone: QccE-21516, similar to human polymerase (RNA) II
(DNA directed) polypeptide C, 33kDa(POLR2C), transcript
variant gamma, n=1 Tax=Macaca fascicularis
RepID=Q4R533_MACFA
Length = 251
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPL S+
Sbjct: 63 FIAHRLGLIPLISD 76
[63][TOP]
>UniRef100_B7Z6D1 cDNA FLJ57430, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z6D1_HUMAN
Length = 424
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPL S+
Sbjct: 63 FIAHRLGLIPLISD 76
[64][TOP]
>UniRef100_B7Z377 cDNA FLJ57937, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z377_HUMAN
Length = 155
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPL S+
Sbjct: 63 FIAHRLGLIPLISD 76
[65][TOP]
>UniRef100_Q9P5U3 Probable DNA-directed RNA polymerase II chain RPB3 n=1
Tax=Neurospora crassa RepID=Q9P5U3_NEUCR
Length = 337
Score = 94.0 bits (232), Expect = 5e-18
Identities = 47/70 (67%), Positives = 57/70 (81%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P VKI + + +FEL +T+ S AN+LRRVM++E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75
Query: 239 RLGLIPLTSE 268
RLGLIPL +E
Sbjct: 76 RLGLIPLNAE 85
[66][TOP]
>UniRef100_P19387 DNA-directed RNA polymerase II subunit RPB3 n=2 Tax=Homo sapiens
RepID=RPB3_HUMAN
Length = 275
Score = 94.0 bits (232), Expect = 5e-18
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPL S+
Sbjct: 63 FIAHRLGLIPLISD 76
[67][TOP]
>UniRef100_A7SI64 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SI64_NEMVE
Length = 274
Score = 93.6 bits (231), Expect = 6e-18
Identities = 46/77 (59%), Positives = 58/77 (75%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P VKI EL D+ +F + T S+AN LRR+ I+E PTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDE 62
Query: 227 FIAHRLGLIPLTSERAM 277
FIAHRLGL+PLTS+ +
Sbjct: 63 FIAHRLGLVPLTSDEVV 79
[68][TOP]
>UniRef100_P97760 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Mus musculus
RepID=RPB3_MOUSE
Length = 275
Score = 93.6 bits (231), Expect = 6e-18
Identities = 45/74 (60%), Positives = 60/74 (81%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL ++ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIAHRLGLIPLTS+
Sbjct: 63 FIAHRLGLIPLTSD 76
[69][TOP]
>UniRef100_UPI000186DA34 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186DA34
Length = 275
Score = 93.2 bits (230), Expect = 8e-18
Identities = 42/77 (54%), Positives = 60/77 (77%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I +L D+ +F++ DT+ S+AN++RRV I+E PT+AID V++E NS+VL DE
Sbjct: 3 YANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADE 62
Query: 227 FIAHRLGLIPLTSERAM 277
FI+HR+GLIPLTS+ +
Sbjct: 63 FISHRVGLIPLTSDEVV 79
[70][TOP]
>UniRef100_Q76L19 Homologue of DNA-directed RNA polymerase II subunit n=1
Tax=Antheraea pernyi RepID=Q76L19_ANTPE
Length = 275
Score = 93.2 bits (230), Expect = 8e-18
Identities = 42/74 (56%), Positives = 58/74 (78%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I EL DD +F + DT+ S+AN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[71][TOP]
>UniRef100_C4WTK3 ACYPI001769 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WTK3_ACYPI
Length = 273
Score = 93.2 bits (230), Expect = 8e-18
Identities = 44/74 (59%), Positives = 58/74 (78%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I EL D +F++ DTD S+AN+LRRV I+E PT+AID V+++ NS+VL+DE
Sbjct: 3 YANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
FIA R+GLIPLTS+
Sbjct: 63 FIASRIGLIPLTSD 76
[72][TOP]
>UniRef100_A3GF98 45 kDa subunit of RNA polymerase II n=1 Tax=Pichia stipitis
RepID=A3GF98_PICST
Length = 315
Score = 93.2 bits (230), Expect = 8e-18
Identities = 45/70 (64%), Positives = 58/70 (82%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P V IRE + D F LRD D ++AN++RRVM++EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIRESERDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 239 RLGLIPLTSE 268
RLGL+PL SE
Sbjct: 69 RLGLVPLVSE 78
[73][TOP]
>UniRef100_C4XY52 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY52_CLAL4
Length = 307
Score = 92.4 bits (228), Expect = 1e-17
Identities = 49/79 (62%), Positives = 59/79 (74%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
ME S PRV IR+ + D F LR D S+AN+LRR M+SEVPT+AIDLVEI+VN+S
Sbjct: 1 MEVDSAESGPRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTS 60
Query: 212 VLNDEFIAHRLGLIPLTSE 268
VL DE ++HRLGLIPL SE
Sbjct: 61 VLADELLSHRLGLIPLNSE 79
[74][TOP]
>UniRef100_B2B158 Predicted CDS Pa_3_9390 n=1 Tax=Podospora anserina
RepID=B2B158_PODAN
Length = 334
Score = 92.4 bits (228), Expect = 1e-17
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P VKI + +FEL++ D S AN+LRRVM++E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAH 75
Query: 239 RLGLIPLTSE 268
RLGLIPL +E
Sbjct: 76 RLGLIPLNAE 85
[75][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 92.0 bits (227), Expect = 2e-17
Identities = 46/75 (61%), Positives = 59/75 (78%)
Frame = +2
Query: 53 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 232
R P + ++EL + RF L TD S+ANALRRV+I+EVPT+AIDLV++ N+S L DEFI
Sbjct: 10 RSPSIVVQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEFI 69
Query: 233 AHRLGLIPLTSERAM 277
AHRLGLIPL SE+A+
Sbjct: 70 AHRLGLIPLLSEKAV 84
[76][TOP]
>UniRef100_Q1HQ43 DNA-directed RNA polymerase II polypeptide n=1 Tax=Bombyx mori
RepID=Q1HQ43_BOMMO
Length = 275
Score = 92.0 bits (227), Expect = 2e-17
Identities = 42/74 (56%), Positives = 58/74 (78%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I EL D+ +F + DT+ S+AN++RRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[77][TOP]
>UniRef100_UPI00015B59AE PREDICTED: similar to DNA-directed RNA polymerase II polypeptide
n=1 Tax=Nasonia vitripennis RepID=UPI00015B59AE
Length = 276
Score = 91.7 bits (226), Expect = 2e-17
Identities = 41/77 (53%), Positives = 60/77 (77%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I EL ++ +F++ DT+ S+AN++RRV I+E PT+AID V+IE NS+VL+DE
Sbjct: 3 YANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSERAM 277
F+AHR+G+IPL S+ +
Sbjct: 63 FLAHRIGMIPLISDEVV 79
[78][TOP]
>UniRef100_B0D0L9 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D0L9_LACBS
Length = 304
Score = 91.7 bits (226), Expect = 2e-17
Identities = 42/69 (60%), Positives = 57/69 (82%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P V+IRELK D F L + D + AN+LRRVM++++PT+AID+VEIE+N++VL DEFIAH
Sbjct: 9 PTVRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAH 68
Query: 239 RLGLIPLTS 265
RLG++PL S
Sbjct: 69 RLGMVPLLS 77
[79][TOP]
>UniRef100_Q6BUW0 DEHA2C07546p n=1 Tax=Debaryomyces hansenii RepID=Q6BUW0_DEBHA
Length = 311
Score = 91.3 bits (225), Expect = 3e-17
Identities = 45/70 (64%), Positives = 56/70 (80%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
PRV IR + F L+D D ++AN++RR M++EVPT+AIDLVEIEVN+SVL DEFI+H
Sbjct: 11 PRVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISH 70
Query: 239 RLGLIPLTSE 268
RLGLIPL SE
Sbjct: 71 RLGLIPLNSE 80
[80][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G229_PHATR
Length = 320
Score = 90.5 bits (223), Expect = 5e-17
Identities = 43/76 (56%), Positives = 58/76 (76%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
Y R PRV+I ++ +F L ++D S+AN LRR+MI+EVPT+AIDLVE NS+VLNDE
Sbjct: 3 YQRFPRVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDE 62
Query: 227 FIAHRLGLIPLTSERA 274
+IAHR+GLIP+ + A
Sbjct: 63 YIAHRMGLIPVRYQPA 78
[81][TOP]
>UniRef100_Q6CQL6 KLLA0D16170p n=1 Tax=Kluyveromyces lactis RepID=Q6CQL6_KLULA
Length = 307
Score = 90.5 bits (223), Expect = 5e-17
Identities = 46/69 (66%), Positives = 55/69 (79%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+VKIRE D F L + D ++AN+LRRVMISE+PT+AID VEIE N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
Query: 239 RLGLIPLTS 265
RLGLIPL S
Sbjct: 66 RLGLIPLQS 74
[82][TOP]
>UniRef100_Q5A462 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
albicans RepID=Q5A462_CANAL
Length = 318
Score = 90.1 bits (222), Expect = 7e-17
Identities = 43/70 (61%), Positives = 57/70 (81%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P V IRE + D F L++ D ++AN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 239 RLGLIPLTSE 268
RLGLIPL SE
Sbjct: 69 RLGLIPLVSE 78
[83][TOP]
>UniRef100_B9WGL5 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Candida
dubliniensis CD36 RepID=B9WGL5_CANDC
Length = 313
Score = 90.1 bits (222), Expect = 7e-17
Identities = 43/70 (61%), Positives = 57/70 (81%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P V IRE + D F L++ D ++AN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 239 RLGLIPLTSE 268
RLGLIPL SE
Sbjct: 69 RLGLIPLVSE 78
[84][TOP]
>UniRef100_B6QC29 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC29_PENMQ
Length = 352
Score = 90.1 bits (222), Expect = 7e-17
Identities = 43/70 (61%), Positives = 57/70 (81%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SVL DEF+AH
Sbjct: 12 PQVTVRETEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAH 71
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 72 RLGLIPLNSK 81
[85][TOP]
>UniRef100_UPI000151B3AC conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151B3AC
Length = 305
Score = 89.7 bits (221), Expect = 9e-17
Identities = 43/69 (62%), Positives = 57/69 (82%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
RV IR+ + D F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 242 LGLIPLTSE 268
LG+IPL SE
Sbjct: 69 LGMIPLNSE 77
[86][TOP]
>UniRef100_Q16XU4 DNA-directed RNA polymerase II subunit n=1 Tax=Aedes aegypti
RepID=Q16XU4_AEDAE
Length = 275
Score = 89.7 bits (221), Expect = 9e-17
Identities = 42/77 (54%), Positives = 57/77 (74%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I EL D+ +F + DTD S+ N+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 227 FIAHRLGLIPLTSERAM 277
F+AHR+GLIPL S+ +
Sbjct: 63 FLAHRVGLIPLISDEVV 79
[87][TOP]
>UniRef100_A5DQ44 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DQ44_PICGU
Length = 305
Score = 89.7 bits (221), Expect = 9e-17
Identities = 43/69 (62%), Positives = 57/69 (82%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
RV IR+ + D F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 242 LGLIPLTSE 268
LG+IPL SE
Sbjct: 69 LGMIPLNSE 77
[88][TOP]
>UniRef100_UPI000051A16D PREDICTED: similar to RNA polymerase II 33kD subunit CG7885-PA,
isoform A n=1 Tax=Apis mellifera RepID=UPI000051A16D
Length = 276
Score = 89.4 bits (220), Expect = 1e-16
Identities = 38/74 (51%), Positives = 59/74 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I +L ++ +F++ DT+ S+AN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 227 FIAHRLGLIPLTSE 268
F+AHR+G+IPL S+
Sbjct: 63 FLAHRIGMIPLISD 76
[89][TOP]
>UniRef100_Q7Q2H6 AGAP010321-PA n=1 Tax=Anopheles gambiae RepID=Q7Q2H6_ANOGA
Length = 273
Score = 89.4 bits (220), Expect = 1e-16
Identities = 42/77 (54%), Positives = 58/77 (75%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V I EL D+ +F + DT+ S+AN+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 227 FIAHRLGLIPLTSERAM 277
F+AHR+GLIPL S+ +
Sbjct: 63 FLAHRVGLIPLISDEVV 79
[90][TOP]
>UniRef100_Q75B05 ADL120Cp n=1 Tax=Eremothecium gossypii RepID=Q75B05_ASHGO
Length = 311
Score = 89.4 bits (220), Expect = 1e-16
Identities = 44/70 (62%), Positives = 56/70 (80%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+VKIRE D F L + D S+AN+LRR+MI+E+PT+AID VEIE N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISH 65
Query: 239 RLGLIPLTSE 268
RLGL+PL S+
Sbjct: 66 RLGLVPLQSK 75
[91][TOP]
>UniRef100_B8M3N2 RNA polymerase II subunit 3 n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8M3N2_TALSN
Length = 353
Score = 89.4 bits (220), Expect = 1e-16
Identities = 42/70 (60%), Positives = 57/70 (81%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SV+ DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAH 71
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 72 RLGLIPLNSK 81
[92][TOP]
>UniRef100_B8PBS2 Predicted protein (Fragment) n=1 Tax=Postia placenta Mad-698-R
RepID=B8PBS2_POSPM
Length = 265
Score = 89.0 bits (219), Expect = 2e-16
Identities = 41/69 (59%), Positives = 57/69 (82%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P V+IREL+ D F + + D ++AN+LRRVM++++PT+AID+VEIE N++VL DEFIAH
Sbjct: 4 PIVRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAH 63
Query: 239 RLGLIPLTS 265
RLG+IPL S
Sbjct: 64 RLGMIPLVS 72
[93][TOP]
>UniRef100_P16370 DNA-directed RNA polymerase II subunit RPB3 n=6 Tax=Saccharomyces
cerevisiae RepID=RPB3_YEAST
Length = 318
Score = 89.0 bits (219), Expect = 2e-16
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+VKIRE D F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 239 RLGLIPLTS 265
RLGLIPL S
Sbjct: 66 RLGLIPLQS 74
[94][TOP]
>UniRef100_B3RV95 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3RV95_TRIAD
Length = 274
Score = 88.6 bits (218), Expect = 2e-16
Identities = 43/77 (55%), Positives = 58/77 (75%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA PRV I +L ++ +F L +TD S+AN+LRR+ I+ VPT+AID V+ N+SVL+DE
Sbjct: 3 YASQPRVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDE 62
Query: 227 FIAHRLGLIPLTSERAM 277
FIAHRLGLIPLT + +
Sbjct: 63 FIAHRLGLIPLTCDEVI 79
[95][TOP]
>UniRef100_Q2GNN7 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2GNN7_CHAGB
Length = 338
Score = 88.6 bits (218), Expect = 2e-16
Identities = 45/70 (64%), Positives = 54/70 (77%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P VKI + +FEL + D + AN+LRRVM+ E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAH 75
Query: 239 RLGLIPLTSE 268
RLGLIPL ++
Sbjct: 76 RLGLIPLNAD 85
[96][TOP]
>UniRef100_C5DHI5 KLTH0E04598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DHI5_LACTC
Length = 328
Score = 88.6 bits (218), Expect = 2e-16
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+VKIRE D F L + D ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISH 65
Query: 239 RLGLIPLTS 265
RLGLIPL S
Sbjct: 66 RLGLIPLQS 74
[97][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 88.2 bits (217), Expect = 3e-16
Identities = 43/69 (62%), Positives = 55/69 (79%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
V + L+D F L+ D S+ANALRRVMI++VPT+AIDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHRL 70
Query: 245 GLIPLTSER 271
GLIPL+S++
Sbjct: 71 GLIPLSSKK 79
[98][TOP]
>UniRef100_C4R7L2 RNA polymerase II third largest subunit B44, part of central core
n=1 Tax=Pichia pastoris GS115 RepID=C4R7L2_PICPG
Length = 304
Score = 88.2 bits (217), Expect = 3e-16
Identities = 43/73 (58%), Positives = 57/73 (78%)
Frame = +2
Query: 50 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 229
++ P+V I +DD L D + S+AN+LRR M++EVPT+AIDLVEI++N+SVL DEF
Sbjct: 2 SKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEF 61
Query: 230 IAHRLGLIPLTSE 268
I+HRLGLIPL SE
Sbjct: 62 ISHRLGLIPLVSE 74
[99][TOP]
>UniRef100_Q6FPN4 Similar to uniprot|P16370 Saccharomyces cerevisiae YIL021w RPB3 n=1
Tax=Candida glabrata RepID=Q6FPN4_CANGA
Length = 312
Score = 87.8 bits (216), Expect = 3e-16
Identities = 43/69 (62%), Positives = 55/69 (79%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+VKIRE D F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEF+AH
Sbjct: 6 PQVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAH 65
Query: 239 RLGLIPLTS 265
RLGLIPL S
Sbjct: 66 RLGLIPLQS 74
[100][TOP]
>UniRef100_C7YWI1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YWI1_NECH7
Length = 335
Score = 87.8 bits (216), Expect = 3e-16
Identities = 47/70 (67%), Positives = 54/70 (77%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+VKI FEL T+ + ANALRRV+ +EVPTIAIDLVEIE+NSSVL DEFIAH
Sbjct: 15 PQVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIAH 74
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 75 RLGLIPLDSK 84
[101][TOP]
>UniRef100_C5MDV1 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MDV1_CANTT
Length = 327
Score = 87.8 bits (216), Expect = 3e-16
Identities = 46/83 (55%), Positives = 60/83 (72%)
Frame = +2
Query: 20 EKETMEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIE 199
++E EG P V IR + D F LR+ D S+AN++RR M++EVPT++IDLVEIE
Sbjct: 2 DREPKEG------PGVTIRTAEKDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIE 55
Query: 200 VNSSVLNDEFIAHRLGLIPLTSE 268
N+SVL DEF++HRLGLIPL SE
Sbjct: 56 KNTSVLADEFLSHRLGLIPLVSE 78
[102][TOP]
>UniRef100_A5E4Q9 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5E4Q9_LODEL
Length = 336
Score = 87.8 bits (216), Expect = 3e-16
Identities = 43/70 (61%), Positives = 56/70 (80%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P V +R+ + D F L+ D S+AN+LRR M++EVPT+AIDLVEI+VN+SVL DEF+AH
Sbjct: 7 PSVIMRDAEKDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 67 RLGLIPLDSQ 76
[103][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BWN8_THAPS
Length = 297
Score = 87.4 bits (215), Expect = 4e-16
Identities = 42/69 (60%), Positives = 54/69 (78%)
Frame = +2
Query: 53 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 232
R P+V+I + +F L +TD S+AN LRR+MI+EVPT+AIDLVE NSSVLNDE+I
Sbjct: 2 RFPKVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYI 61
Query: 233 AHRLGLIPL 259
AHRLGL+P+
Sbjct: 62 AHRLGLVPI 70
[104][TOP]
>UniRef100_A9URC4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9URC4_MONBE
Length = 276
Score = 87.4 bits (215), Expect = 4e-16
Identities = 43/72 (59%), Positives = 55/72 (76%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
PR+++ E D F L+ D ++AN+ RRVMI+EVPT+AID V I N+SVL+DEF+AH
Sbjct: 11 PRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDEFLAH 70
Query: 239 RLGLIPLTSERA 274
RLGLIPLTSE A
Sbjct: 71 RLGLIPLTSEAA 82
[105][TOP]
>UniRef100_A2QC01 Catalytic activity: N nucleoside triphosphate <=> N diphosphate +
(RNA)(N) n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QC01_ASPNC
Length = 338
Score = 87.4 bits (215), Expect = 4e-16
Identities = 42/70 (60%), Positives = 55/70 (78%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F+L D + AN+LRRVM+SE+PT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 72 RLGLIPLISK 81
[106][TOP]
>UniRef100_C8TDY9 Rna polymerase ii b3 subunit n=1 Tax=Eimeria tenella
RepID=C8TDY9_EIMTE
Length = 147
Score = 87.0 bits (214), Expect = 6e-16
Identities = 42/67 (62%), Positives = 55/67 (82%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+++ EL + + RF L + DASIANALRRVMISEVPT+AIDLV + N+SVL+DE+I HRL
Sbjct: 44 IRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHRL 103
Query: 245 GLIPLTS 265
GL+P+ S
Sbjct: 104 GLLPIDS 110
[107][TOP]
>UniRef100_A7EJ53 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7EJ53_SCLS1
Length = 335
Score = 87.0 bits (214), Expect = 6e-16
Identities = 45/70 (64%), Positives = 53/70 (75%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+VKI E FEL + D S AN+LRR ++SEVPTIAID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 75 RLGLIPLNSK 84
[108][TOP]
>UniRef100_A6S2E5 RNA polymerase II subunit 3 n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6S2E5_BOTFB
Length = 336
Score = 87.0 bits (214), Expect = 6e-16
Identities = 45/70 (64%), Positives = 53/70 (75%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+VKI E FEL + D S AN+LRR ++SEVPTIAID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 75 RLGLIPLNSK 84
[109][TOP]
>UniRef100_Q1DX59 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
RepID=Q1DX59_COCIM
Length = 345
Score = 86.7 bits (213), Expect = 7e-16
Identities = 43/70 (61%), Positives = 54/70 (77%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 73 RLGLIPLHSK 82
[110][TOP]
>UniRef100_C5P0B5 DNA-directed RNA polymerase II 45 kDa polypeptide, putative n=1
Tax=Coccidioides posadasii C735 delta SOWgp
RepID=C5P0B5_COCP7
Length = 345
Score = 86.7 bits (213), Expect = 7e-16
Identities = 43/70 (61%), Positives = 54/70 (77%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 73 RLGLIPLHSK 82
[111][TOP]
>UniRef100_UPI00005A0224 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0224
Length = 72
Score = 86.3 bits (212), Expect = 1e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V+I EL D+ +F + +TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 227 FIAHRLGL 250
FIAHRLGL
Sbjct: 63 FIAHRLGL 70
[112][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 86.3 bits (212), Expect = 1e-15
Identities = 42/70 (60%), Positives = 56/70 (80%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
V + L+D+ F+L+ D S+ANALRR+MI++VPT++IDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRL 70
Query: 245 GLIPLTSERA 274
GLIPL S +A
Sbjct: 71 GLIPLDSTKA 80
[113][TOP]
>UniRef100_C4JV60 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JV60_UNCRE
Length = 345
Score = 86.3 bits (212), Expect = 1e-15
Identities = 42/70 (60%), Positives = 55/70 (78%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +R+++ F L D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVRDVETHRVDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 73 RLGLIPLHSK 82
[114][TOP]
>UniRef100_C1H5R6 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H5R6_PARBA
Length = 352
Score = 86.3 bits (212), Expect = 1e-15
Identities = 41/74 (55%), Positives = 55/74 (74%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 239 RLGLIPLTSERAMA 280
RLGLIPL S+ A
Sbjct: 74 RLGLIPLNSKNCDA 87
[115][TOP]
>UniRef100_C1GI99 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GI99_PARBD
Length = 352
Score = 86.3 bits (212), Expect = 1e-15
Identities = 41/74 (55%), Positives = 55/74 (74%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 239 RLGLIPLTSERAMA 280
RLGLIPL S+ A
Sbjct: 74 RLGLIPLNSKNCDA 87
[116][TOP]
>UniRef100_C0SC71 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SC71_PARBP
Length = 283
Score = 86.3 bits (212), Expect = 1e-15
Identities = 41/74 (55%), Positives = 55/74 (74%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + + F L D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 239 RLGLIPLTSERAMA 280
RLGLIPL S+ A
Sbjct: 74 RLGLIPLNSKNCDA 87
[117][TOP]
>UniRef100_UPI000023DAEE hypothetical protein FG01447.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023DAEE
Length = 337
Score = 85.9 bits (211), Expect = 1e-15
Identities = 47/70 (67%), Positives = 53/70 (75%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+VKI FEL T+ S ANA+RRV+ +EVPTIAIDLVEIE NSSVL DEFIAH
Sbjct: 15 PQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAH 74
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 75 RLGLIPLDSK 84
[118][TOP]
>UniRef100_C4QNG7 DNA-directed rna polymerase II subunit, putative n=1
Tax=Schistosoma mansoni RepID=C4QNG7_SCHMA
Length = 266
Score = 85.9 bits (211), Expect = 1e-15
Identities = 41/77 (53%), Positives = 57/77 (74%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
YA P V + ++ +F L +TD S+ANA+RRV I+EVPT+AID V+IE N+++LNDE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDE 62
Query: 227 FIAHRLGLIPLTSERAM 277
FIA R+GLIPLT + +
Sbjct: 63 FIAQRVGLIPLTCDNVV 79
[119][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
GT1 RepID=B9PNQ8_TOXGO
Length = 484
Score = 85.9 bits (211), Expect = 1e-15
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +2
Query: 38 GVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 217
G S A P + ++E+ + +F L + D SIAN LRRVMISEVP++AIDLV + N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203
Query: 218 NDEFIAHRLGLIPLTSER 271
+DE+I+HRLGL+P+ S R
Sbjct: 204 HDEYISHRLGLLPIDSTR 221
[120][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
RepID=B6KGB1_TOXGO
Length = 484
Score = 85.9 bits (211), Expect = 1e-15
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +2
Query: 38 GVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVL 217
G S A P + ++E+ + +F L + D SIAN LRRVMISEVP++AIDLV + N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203
Query: 218 NDEFIAHRLGLIPLTSER 271
+DE+I+HRLGL+P+ S R
Sbjct: 204 HDEYISHRLGLLPIDSTR 221
[121][TOP]
>UniRef100_Q2UF63 RNA polymerase II n=1 Tax=Aspergillus oryzae RepID=Q2UF63_ASPOR
Length = 342
Score = 85.9 bits (211), Expect = 1e-15
Identities = 42/70 (60%), Positives = 54/70 (77%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F+L D + AN+LRR M++EVPTIAIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 72 RLGLIPLNSK 81
[122][TOP]
>UniRef100_B8NGG7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8NGG7_ASPFN
Length = 338
Score = 85.9 bits (211), Expect = 1e-15
Identities = 42/70 (60%), Positives = 54/70 (77%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F+L D + AN+LRR M++EVPTIAIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 72 RLGLIPLNSK 81
[123][TOP]
>UniRef100_B6K2N9 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6K2N9_SCHJY
Length = 308
Score = 85.9 bits (211), Expect = 1e-15
Identities = 40/69 (57%), Positives = 54/69 (78%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P V I+ + + F L +TD S+AN+LRRV++ E+PT+AIDLVEI VN+SV+ DEF+AH
Sbjct: 5 PNVTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAH 64
Query: 239 RLGLIPLTS 265
RLG+IPL S
Sbjct: 65 RLGMIPLNS 73
[124][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
Length = 348
Score = 85.5 bits (210), Expect = 2e-15
Identities = 40/73 (54%), Positives = 56/73 (76%)
Frame = +2
Query: 53 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 232
R P ++I E + +F L +TD S+ANALRR+M++E+PT+AIDLV I N+SVL+DEFI
Sbjct: 7 RTPHIEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFI 66
Query: 233 AHRLGLIPLTSER 271
HRLGL+P+ S +
Sbjct: 67 VHRLGLLPIDSRQ 79
[125][TOP]
>UniRef100_Q0CYF6 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Aspergillus terreus NIH2624 RepID=Q0CYF6_ASPTN
Length = 331
Score = 85.5 bits (210), Expect = 2e-15
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F+L D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 13 PQVTVREAEPYRVDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAH 72
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 73 RLGLIPLNSK 82
[126][TOP]
>UniRef100_C5DWL5 ZYRO0D15796p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DWL5_ZYGRC
Length = 308
Score = 85.5 bits (210), Expect = 2e-15
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+VKIRE + F L + ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFIAH
Sbjct: 6 PQVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAH 65
Query: 239 RLGLIPLTS 265
RLGLIPL S
Sbjct: 66 RLGLIPLQS 74
[127][TOP]
>UniRef100_C4V9J5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4V9J5_NOSCE
Length = 233
Score = 85.5 bits (210), Expect = 2e-15
Identities = 40/70 (57%), Positives = 56/70 (80%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
++ I E D++ +F LRDT S ANALRR++ISEVPT+ IDLVEIE+N++ L DE I+HR
Sbjct: 2 KILIEESTDNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHR 61
Query: 242 LGLIPLTSER 271
LGL+PL +++
Sbjct: 62 LGLVPLYTKK 71
[128][TOP]
>UniRef100_C5GT99 RNA polymerase II subunit 3 n=2 Tax=Ajellomyces dermatitidis
RepID=C5GT99_AJEDR
Length = 346
Score = 85.1 bits (209), Expect = 2e-15
Identities = 42/74 (56%), Positives = 54/74 (72%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F L D + AN+LRR +++EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 239 RLGLIPLTSERAMA 280
RLGLIPL S+ A
Sbjct: 73 RLGLIPLNSKNCDA 86
[129][TOP]
>UniRef100_A1DHL4 RNA polymerase II subunit 3 n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1DHL4_NEOFI
Length = 336
Score = 84.7 bits (208), Expect = 3e-15
Identities = 41/70 (58%), Positives = 55/70 (78%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 72 RLGLIPLNSK 81
[130][TOP]
>UniRef100_A8N5W0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N5W0_COPC7
Length = 366
Score = 84.0 bits (206), Expect = 5e-15
Identities = 39/69 (56%), Positives = 53/69 (76%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P V++RE+K D F L + D + AN+ RRV+++++PT+AIDLVE E N+SVL DE+IAH
Sbjct: 8 PIVRVREVKKDKVNFVLENVDLAFANSFRRVVMADIPTVAIDLVEFEANTSVLPDEYIAH 67
Query: 239 RLGLIPLTS 265
RLG IPL S
Sbjct: 68 RLGQIPLIS 76
[131][TOP]
>UniRef100_A1C6Y7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus clavatus
RepID=A1C6Y7_ASPCL
Length = 333
Score = 84.0 bits (206), Expect = 5e-15
Identities = 41/70 (58%), Positives = 55/70 (78%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYHVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAH 71
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 72 RLGLIPLNSK 81
[132][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CSH3_CRYPV
Length = 355
Score = 83.6 bits (205), Expect = 6e-15
Identities = 40/71 (56%), Positives = 55/71 (77%)
Frame = +2
Query: 53 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 232
R P+ +I EL + RF L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 233 AHRLGLIPLTS 265
HR+GLIPL S
Sbjct: 68 VHRMGLIPLDS 78
[133][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
RepID=Q5CNH1_CRYHO
Length = 355
Score = 83.6 bits (205), Expect = 6e-15
Identities = 40/71 (56%), Positives = 55/71 (77%)
Frame = +2
Query: 53 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 232
R P+ +I EL + RF L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 233 AHRLGLIPLTS 265
HR+GLIPL S
Sbjct: 68 VHRMGLIPLDS 78
[134][TOP]
>UniRef100_C8V1J2 RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090) n=2
Tax=Emericella nidulans RepID=C8V1J2_EMENI
Length = 333
Score = 83.6 bits (205), Expect = 6e-15
Identities = 40/70 (57%), Positives = 54/70 (77%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F+L D + AN+LRRVM++E+PT+AID+VE+E NSSVL DE +AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71
Query: 239 RLGLIPLTSE 268
RLGLIPL S+
Sbjct: 72 RLGLIPLDSK 81
[135][TOP]
>UniRef100_C0NSH0 DNA-directed RNA polymerase II polypeptide n=1 Tax=Ajellomyces
capsulatus G186AR RepID=C0NSH0_AJECG
Length = 475
Score = 83.6 bits (205), Expect = 6e-15
Identities = 40/74 (54%), Positives = 54/74 (72%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F L D + AN+LRR +++E+PT+AID+VEIE N+SVL DEFI+H
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72
Query: 239 RLGLIPLTSERAMA 280
RLGLIPL S+ A
Sbjct: 73 RLGLIPLNSKNCDA 86
[136][TOP]
>UniRef100_B6QC30 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC30_PENMQ
Length = 370
Score = 83.6 bits (205), Expect = 6e-15
Identities = 39/56 (69%), Positives = 50/56 (89%)
Frame = +2
Query: 101 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE 268
F+L + D ++ANALRR MI+EVPT+AID+VE+EVN+SVL DEF+AHRLGLIPL S+
Sbjct: 44 FKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSK 99
[137][TOP]
>UniRef100_Q8SRR5 DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN n=1 Tax=Encephalitozoon
cuniculi RepID=Q8SRR5_ENCCU
Length = 240
Score = 83.2 bits (204), Expect = 8e-15
Identities = 42/74 (56%), Positives = 55/74 (74%)
Frame = +2
Query: 56 MPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 235
M + + EL + RF L +T ANALRR++ISEVPTIAID+VEIE N++VL DE +A
Sbjct: 1 MVALTVEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLA 60
Query: 236 HRLGLIPLTSERAM 277
HRLGLIP+ S+R +
Sbjct: 61 HRLGLIPIYSKREL 74
[138][TOP]
>UniRef100_Q4P8L3 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P8L3_USTMA
Length = 329
Score = 83.2 bits (204), Expect = 8e-15
Identities = 37/69 (53%), Positives = 54/69 (78%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P++ +R+L D A F L + D S AN+LRR+MI+++PT+AID+VEI N++VL DE +AH
Sbjct: 12 PKITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAH 71
Query: 239 RLGLIPLTS 265
RLG++PL S
Sbjct: 72 RLGMVPLLS 80
[139][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5LCN7_9ALVE
Length = 336
Score = 81.6 bits (200), Expect = 2e-14
Identities = 39/71 (54%), Positives = 55/71 (77%)
Frame = +2
Query: 56 MPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 235
MP +++ L D+ +F + + + +IANALRR+MI+EVPT+AID V IE NSS L DEF+A
Sbjct: 12 MPVIEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVA 71
Query: 236 HRLGLIPLTSE 268
HRLGL+P+ S+
Sbjct: 72 HRLGLLPINSK 82
[140][TOP]
>UniRef100_A9BL73 Rpb3 n=1 Tax=Cryptophyta RepID=A9BL73_9CRYP
Length = 307
Score = 80.9 bits (198), Expect = 4e-14
Identities = 40/72 (55%), Positives = 57/72 (79%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P ++I L + ++ L++T+ SI N+LRRVMI+EVPT AIDL+ IE+NSSV++DEF++H
Sbjct: 4 PSLEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSH 63
Query: 239 RLGLIPLTSERA 274
RLGL+PL S A
Sbjct: 64 RLGLLPLFSNFA 75
[141][TOP]
>UniRef100_P37382 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces pombe RepID=RPB3_SCHPO
Length = 297
Score = 80.9 bits (198), Expect = 4e-14
Identities = 37/67 (55%), Positives = 53/67 (79%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+ IR + + F L +T ++AN+LRRV+++E+PT+AIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 245 GLIPLTS 265
G+IPL S
Sbjct: 67 GMIPLDS 73
[142][TOP]
>UniRef100_B6GWS8 Pc12g07350 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GWS8_PENCW
Length = 335
Score = 80.5 bits (197), Expect = 5e-14
Identities = 38/69 (55%), Positives = 52/69 (75%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+V +RE + F L D + AN+LRR +++EVPT+A+DL+EIE N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71
Query: 239 RLGLIPLTS 265
RLG+IPL S
Sbjct: 72 RLGMIPLNS 80
[143][TOP]
>UniRef100_Q5CPY6 RNA polymerase III C5 subunit n=1 Tax=Cryptosporidium parvum Iowa
II RepID=Q5CPY6_CRYPV
Length = 344
Score = 79.3 bits (194), Expect = 1e-13
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+K+ ELK D F++ DASIANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 245 GLIPL 259
GLIP+
Sbjct: 117 GLIPM 121
[144][TOP]
>UniRef100_Q5CJZ9 DNA-directed RNA polymerase I n=1 Tax=Cryptosporidium hominis
RepID=Q5CJZ9_CRYHO
Length = 344
Score = 79.3 bits (194), Expect = 1e-13
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+K+ ELK D F++ DASIANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 245 GLIPL 259
GLIP+
Sbjct: 117 GLIPM 121
[145][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
histolytica HM-1:IMSS RepID=C4M554_ENTHI
Length = 283
Score = 79.3 bits (194), Expect = 1e-13
Identities = 41/78 (52%), Positives = 51/78 (65%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
ME Y R P + E K++ F + TD S+ N LRRV+++E PTIAI LV + NSS
Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60
Query: 212 VLNDEFIAHRLGLIPLTS 265
L DEFIAHRLGLIP+ S
Sbjct: 61 YLCDEFIAHRLGLIPIDS 78
[146][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
dispar SAW760 RepID=B0EHR6_ENTDI
Length = 283
Score = 79.3 bits (194), Expect = 1e-13
Identities = 41/78 (52%), Positives = 51/78 (65%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
ME Y R P + E K++ F + TD S+ N LRRV+++E PTIAI LV + NSS
Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60
Query: 212 VLNDEFIAHRLGLIPLTS 265
L DEFIAHRLGLIP+ S
Sbjct: 61 YLCDEFIAHRLGLIPIDS 78
[147][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
strain Friedlin RepID=Q4FY45_LEIMA
Length = 337
Score = 78.6 bits (192), Expect = 2e-13
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
VK + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRL
Sbjct: 9 VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68
Query: 245 GLIPLTSERA 274
GL+PL SE+A
Sbjct: 69 GLVPLFSEKA 78
[148][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
infantum RepID=A4I451_LEIIN
Length = 337
Score = 78.6 bits (192), Expect = 2e-13
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
VK + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRL
Sbjct: 9 VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68
Query: 245 GLIPLTSERA 274
GL+PL SE+A
Sbjct: 69 GLVPLFSEKA 78
[149][TOP]
>UniRef100_C9SI18 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Verticillium albo-atrum VaMs.102 RepID=C9SI18_9PEZI
Length = 375
Score = 78.6 bits (192), Expect = 2e-13
Identities = 38/71 (53%), Positives = 52/71 (73%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
RV+ +L + F L DASIANALRR++ISE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 54 RVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYIYNNTSVIQDEVLAHR 113
Query: 242 LGLIPLTSERA 274
LGL+P T+ +A
Sbjct: 114 LGLVPFTANKA 124
[150][TOP]
>UniRef100_A4R7L3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4R7L3_MAGGR
Length = 330
Score = 78.6 bits (192), Expect = 2e-13
Identities = 39/70 (55%), Positives = 52/70 (74%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
VKI FEL + D S+AN++RRVM++E+PT+AID EI+ N+SVL DEFIAHRL
Sbjct: 17 VKIFHADSVHVNFELSNVDLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRL 76
Query: 245 GLIPLTSERA 274
GL+PL++ A
Sbjct: 77 GLVPLSARGA 86
[151][TOP]
>UniRef100_A4HH22 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
braziliensis RepID=A4HH22_LEIBR
Length = 337
Score = 78.2 bits (191), Expect = 3e-13
Identities = 37/58 (63%), Positives = 48/58 (82%)
Frame = +2
Query: 101 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 274
F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A
Sbjct: 21 FQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKA 78
[152][TOP]
>UniRef100_B0XTA3 RNA polymerase II subunit 3 n=2 Tax=Aspergillus fumigatus
RepID=B0XTA3_ASPFC
Length = 392
Score = 78.2 bits (191), Expect = 3e-13
Identities = 37/56 (66%), Positives = 48/56 (85%)
Frame = +2
Query: 101 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE 268
F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+
Sbjct: 82 FKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSK 137
[153][TOP]
>UniRef100_Q6IP84 MGC78824 protein n=1 Tax=Xenopus laevis RepID=Q6IP84_XENLA
Length = 347
Score = 77.0 bits (188), Expect = 6e-13
Identities = 33/69 (47%), Positives = 54/69 (78%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
R+ I +++DD+ F++ DASIANA RR+++SEVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RIDIVKMEDDILEFDMVGIDASIANAFRRILLSEVPTVAVEKVYVYNNTSIIQDEILAHR 109
Query: 242 LGLIPLTSE 268
LGLIP+ ++
Sbjct: 110 LGLIPIRAD 118
[154][TOP]
>UniRef100_Q8I2S6 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8I2S6_PLAF7
Length = 335
Score = 77.0 bits (188), Expect = 6e-13
Identities = 36/68 (52%), Positives = 52/68 (76%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
++ I +L D F L ++++ IANALRR+M+SE+PT+AID+V + N+S +DEFIAHR
Sbjct: 12 QINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFIAHR 71
Query: 242 LGLIPLTS 265
LGLIP+ S
Sbjct: 72 LGLIPIDS 79
[155][TOP]
>UniRef100_Q4Z7P9 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium berghei
RepID=Q4Z7P9_PLABE
Length = 331
Score = 77.0 bits (188), Expect = 6e-13
Identities = 34/68 (50%), Positives = 54/68 (79%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+++I+ + + F L +++A++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR
Sbjct: 10 KIEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 69
Query: 242 LGLIPLTS 265
+GLIP+ S
Sbjct: 70 IGLIPIDS 77
[156][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
Length = 351
Score = 77.0 bits (188), Expect = 6e-13
Identities = 36/64 (56%), Positives = 48/64 (75%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+KI EL D F+L DA++ANALRR+++ EVPT+AI+ V+I NS V+ DE +AHRL
Sbjct: 66 IKINELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRL 125
Query: 245 GLIP 256
GLIP
Sbjct: 126 GLIP 129
[157][TOP]
>UniRef100_B5IWT9 RNA polymerase Rpb3/Rpb11 dimerisation domain n=1 Tax=Thermococcus
barophilus MP RepID=B5IWT9_9EURY
Length = 258
Score = 76.6 bits (187), Expect = 8e-13
Identities = 38/68 (55%), Positives = 48/68 (70%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
++K+ E ++D RF L DA+ ANALRRV+I EVPT A+D VE N S L DE IAHR
Sbjct: 2 KIKVLEKREDAIRFILEGVDAAFANALRRVIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 242 LGLIPLTS 265
L +IPLT+
Sbjct: 62 LAMIPLTT 69
[158][TOP]
>UniRef100_B3L2P7 Dna-directed rna polymerase II, putative n=1 Tax=Plasmodium
knowlesi strain H RepID=B3L2P7_PLAKH
Length = 334
Score = 76.3 bits (186), Expect = 1e-12
Identities = 36/72 (50%), Positives = 53/72 (73%)
Frame = +2
Query: 50 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 229
A+ V+I +L D F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF
Sbjct: 10 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 69
Query: 230 IAHRLGLIPLTS 265
+AHRLGLIP+ S
Sbjct: 70 LAHRLGLIPIDS 81
[159][TOP]
>UniRef100_A5K6U4 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium vivax
RepID=A5K6U4_PLAVI
Length = 333
Score = 76.3 bits (186), Expect = 1e-12
Identities = 36/72 (50%), Positives = 53/72 (73%)
Frame = +2
Query: 50 ARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 229
A+ V+I +L D F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF
Sbjct: 9 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 68
Query: 230 IAHRLGLIPLTS 265
+AHRLGLIP+ S
Sbjct: 69 LAHRLGLIPIDS 80
[160][TOP]
>UniRef100_A6RAE4 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus
NAm1 RepID=A6RAE4_AJECN
Length = 576
Score = 76.3 bits (186), Expect = 1e-12
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +2
Query: 101 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA 280
F L D + AN+LRR +++E+PT+AID+VEIE N+SVL DEFI+HRLGLIPL S+ A
Sbjct: 50 FRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDA 109
[161][TOP]
>UniRef100_C6A1B3 DNA-directed RNA polymerase subunit D n=1 Tax=Thermococcus
sibiricus MM 739 RepID=C6A1B3_THESM
Length = 271
Score = 76.3 bits (186), Expect = 1e-12
Identities = 41/71 (57%), Positives = 47/71 (66%)
Frame = +2
Query: 53 RMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFI 232
R ++KI E +DD RF L D + ANALRR +I EVPT AID VE N S L DE I
Sbjct: 12 RKMQIKILEKRDDAIRFILEGMDIAFANALRRTIIGEVPTFAIDEVEFYENDSALFDEII 71
Query: 233 AHRLGLIPLTS 265
AHRL LIPLT+
Sbjct: 72 AHRLSLIPLTT 82
[162][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N9T5_THEPA
Length = 354
Score = 75.9 bits (185), Expect = 1e-12
Identities = 35/72 (48%), Positives = 56/72 (77%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P ++I +L+ D F L ++D S ANA+RRV++SE+P++AI++V + N+SVL+DE+I+H
Sbjct: 10 PSIEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISH 69
Query: 239 RLGLIPLTSERA 274
RLGL+P+ S A
Sbjct: 70 RLGLLPIDSTLA 81
[163][TOP]
>UniRef100_Q6C4T2 YALI0E23947p n=1 Tax=Yarrowia lipolytica RepID=Q6C4T2_YARLI
Length = 339
Score = 75.9 bits (185), Expect = 1e-12
Identities = 34/66 (51%), Positives = 50/66 (75%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+VKI L D+ + F+L D S+ANA RR+MI+++PTIA++ V I N+S++ DE +AHR
Sbjct: 46 QVKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFIHANTSIIQDEVLAHR 105
Query: 242 LGLIPL 259
LGL+PL
Sbjct: 106 LGLVPL 111
[164][TOP]
>UniRef100_C5FPK3 RNA polymerase II subunit 3 n=1 Tax=Microsporum canis CBS 113480
RepID=C5FPK3_NANOT
Length = 359
Score = 75.9 bits (185), Expect = 1e-12
Identities = 35/56 (62%), Positives = 46/56 (82%)
Frame = +2
Query: 101 FELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE 268
F L D + AN+ RR +++E+PT+AID+VEIEVN+SVL DEFI+HRLGLIPL S+
Sbjct: 37 FRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSK 92
[165][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
RepID=Q4UFZ3_THEAN
Length = 354
Score = 75.5 bits (184), Expect = 2e-12
Identities = 34/72 (47%), Positives = 56/72 (77%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P +++ +L+ D F L ++D S ANA+RRV++SE+P++AI++V + N+SVL+DE+I+H
Sbjct: 10 PSIEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISH 69
Query: 239 RLGLIPLTSERA 274
RLGL+P+ S A
Sbjct: 70 RLGLLPIDSTLA 81
[166][TOP]
>UniRef100_Q7RLX3 Conjugation stage-specific protein, putative n=1 Tax=Plasmodium
yoelii yoelii RepID=Q7RLX3_PLAYO
Length = 335
Score = 75.1 bits (183), Expect = 2e-12
Identities = 33/67 (49%), Positives = 53/67 (79%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
++I+ + + F L ++++++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR+
Sbjct: 15 IEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 74
Query: 245 GLIPLTS 265
GLIP+ S
Sbjct: 75 GLIPIDS 81
[167][TOP]
>UniRef100_UPI000180C3EB PREDICTED: similar to RNA polymerase 1-1 n=1 Tax=Ciona intestinalis
RepID=UPI000180C3EB
Length = 345
Score = 74.3 bits (181), Expect = 4e-12
Identities = 35/68 (51%), Positives = 52/68 (76%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+ + EL D +F++ DA+IANA RR++I+EVPT+AI+ V I N++V+ DE +AHRL
Sbjct: 48 INVIELGPDSMQFDMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRL 107
Query: 245 GLIPLTSE 268
GLIPLT++
Sbjct: 108 GLIPLTAD 115
[168][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
Length = 308
Score = 74.3 bits (181), Expect = 4e-12
Identities = 40/71 (56%), Positives = 52/71 (73%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
R++I EL D+ +F + D SIANA+RRVMI+EVP +AI V+I N+S L+DEF+A R
Sbjct: 13 RIEILELSDEKCKFSF-EGDLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 242 LGLIPLTSERA 274
LGLIPL S A
Sbjct: 72 LGLIPLVSYAA 82
[169][TOP]
>UniRef100_B2W6Y7 DNA-directed RNA polymerase subunit D n=1 Tax=Pyrenophora
tritici-repentis Pt-1C-BFP RepID=B2W6Y7_PYRTR
Length = 334
Score = 73.9 bits (180), Expect = 5e-12
Identities = 35/68 (51%), Positives = 51/68 (75%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
V+ E A F +++ + AN+LRRVM+SE+PT+AID+VE+ N+SVL DEF+ HRL
Sbjct: 12 VRFLEANSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRL 71
Query: 245 GLIPLTSE 268
GL+PL+S+
Sbjct: 72 GLVPLSSK 79
[170][TOP]
>UniRef100_UPI0000EDC949 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Ornithorhynchus anatinus RepID=UPI0000EDC949
Length = 346
Score = 73.6 bits (179), Expect = 7e-12
Identities = 31/69 (44%), Positives = 54/69 (78%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
RV + ++++D F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVQMEEDSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIMQDEVLAHR 109
Query: 242 LGLIPLTSE 268
LGLIP+T++
Sbjct: 110 LGLIPITAD 118
[171][TOP]
>UniRef100_B4FAR4 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FAR4_MAIZE
Length = 372
Score = 73.6 bits (179), Expect = 7e-12
Identities = 35/69 (50%), Positives = 52/69 (75%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+++I L +D F++ DASIANA RR++ISEVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 73 KIEINRLTEDYMEFDMIGIDASIANAFRRILISEVPTMAIEKVFMADNNSVIADEVLSHR 132
Query: 242 LGLIPLTSE 268
LGLIPL ++
Sbjct: 133 LGLIPLDAD 141
[172][TOP]
>UniRef100_Q6C2S4 YALI0F05566p n=1 Tax=Yarrowia lipolytica RepID=Q6C2S4_YARLI
Length = 314
Score = 73.6 bits (179), Expect = 7e-12
Identities = 34/48 (70%), Positives = 44/48 (91%)
Frame = +2
Query: 125 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE 268
++AN+LRRVM++E+PT+AIDLVEI N+SVL DEFI+HRLGLIPL S+
Sbjct: 21 TLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQ 68
[173][TOP]
>UniRef100_UPI0000E48A01 PREDICTED: hypothetical protein isoform 1, partial n=1
Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A01
Length = 246
Score = 73.2 bits (178), Expect = 9e-12
Identities = 33/50 (66%), Positives = 45/50 (90%)
Frame = +2
Query: 128 IANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 277
+AN++RR +++EVPTIAID VEI+ NSSVL+DEFI+HR+GLIPLTS+ +
Sbjct: 1 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVV 50
[174][TOP]
>UniRef100_B9GFY9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GFY9_POPTR
Length = 390
Score = 73.2 bits (178), Expect = 9e-12
Identities = 35/66 (53%), Positives = 49/66 (74%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
R+K+ L D F++ DA++ANA RR++ISEVPT+AI+ V I N+SV+ DE +AHR
Sbjct: 88 RIKVIALDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVIQDEVLAHR 147
Query: 242 LGLIPL 259
LGLIP+
Sbjct: 148 LGLIPI 153
[175][TOP]
>UniRef100_Q4XR41 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
chabaudi RepID=Q4XR41_PLACH
Length = 331
Score = 73.2 bits (178), Expect = 9e-12
Identities = 32/67 (47%), Positives = 52/67 (77%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
++I+ + + F L +++ ++ANALRR+M+SEVPT+A+D+V + N+S +DEFIAHR+
Sbjct: 11 IEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRI 70
Query: 245 GLIPLTS 265
GLIP+ S
Sbjct: 71 GLIPIDS 77
[176][TOP]
>UniRef100_Q0UL31 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UL31_PHANO
Length = 335
Score = 73.2 bits (178), Expect = 9e-12
Identities = 35/67 (52%), Positives = 50/67 (74%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
V+ E A F +++ + AN+LRRVM++E+PT+AID+VE+ N+SVL DEF+ HRL
Sbjct: 12 VRFLEANSQRANFIVQNFNLETANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHRL 71
Query: 245 GLIPLTS 265
GLIPL+S
Sbjct: 72 GLIPLSS 78
[177][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
RepID=A7AWB4_BABBO
Length = 382
Score = 72.8 bits (177), Expect = 1e-11
Identities = 37/81 (45%), Positives = 54/81 (66%)
Frame = +2
Query: 32 MEGVSYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSS 211
ME S P + I L F L + D + AN+LRR+M+SE+P++AI++V + N+S
Sbjct: 1 MEWSSRQLRPSIDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTS 60
Query: 212 VLNDEFIAHRLGLIPLTSERA 274
VL+DE+IAHRLGL+P+ S A
Sbjct: 61 VLHDEYIAHRLGLLPIESSSA 81
[178][TOP]
>UniRef100_C5A249 DNA-directed RNA polymerase subunit D (RpoD) n=1 Tax=Thermococcus
gammatolerans EJ3 RepID=C5A249_THEGJ
Length = 260
Score = 72.4 bits (176), Expect = 1e-11
Identities = 36/69 (52%), Positives = 47/69 (68%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+ +I E ++D +F LR D ANALRR +++EVPT A+D VE N S L DE IAH
Sbjct: 3 PKFEIFERREDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 239 RLGLIPLTS 265
RL +IPLT+
Sbjct: 63 RLAMIPLTT 71
[179][TOP]
>UniRef100_B6JXY4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6JXY4_SCHJY
Length = 349
Score = 72.0 bits (175), Expect = 2e-11
Identities = 35/71 (49%), Positives = 50/71 (70%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+KI L D F++ DASI NA RR++I+E+PT+AI+ V I N+S+L DE ++HRL
Sbjct: 48 IKITSLDDLNMTFDISGIDASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDEVLSHRL 107
Query: 245 GLIPLTSERAM 277
GLIPL ++ M
Sbjct: 108 GLIPLKADPDM 118
[180][TOP]
>UniRef100_Q8SSL9 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi
RepID=Q8SSL9_ENCCU
Length = 305
Score = 71.6 bits (174), Expect = 2e-11
Identities = 35/71 (49%), Positives = 49/71 (69%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
++I E + F+L + D SIANALRR++ SEVPT+A+ + ++ N SV DEFIAHRL
Sbjct: 32 IRITEYSSEKLEFDLINVDCSIANALRRILSSEVPTMAVRDIFLKENESVFPDEFIAHRL 91
Query: 245 GLIPLTSERAM 277
GL+PL + M
Sbjct: 92 GLVPLEVDPEM 102
[181][TOP]
>UniRef100_B2WCA1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Pyrenophora tritici-repentis Pt-1C-BFP
RepID=B2WCA1_PYRTR
Length = 376
Score = 71.6 bits (174), Expect = 2e-11
Identities = 33/60 (55%), Positives = 46/60 (76%)
Frame = +2
Query: 95 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 274
A+F L D S+ANA RR+++SE+PT+AI+ V I N+S++ DE +AHRLGLIPL +RA
Sbjct: 62 AQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRA 121
[182][TOP]
>UniRef100_A8N510 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N510_COPC7
Length = 356
Score = 71.6 bits (174), Expect = 2e-11
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+V+I L F+L DASIANA RR+MI+EVPTIAI+ V + N+SV+ DE +AHR
Sbjct: 47 KVQITRLSQHTIEFDLVGVDASIANAFRRIMIAEVPTIAIEHVYVWDNTSVIVDEVLAHR 106
Query: 242 LGLIPL 259
+GL+PL
Sbjct: 107 IGLVPL 112
[183][TOP]
>UniRef100_B7R325 RNA polymerase Rpb3/Rpb11 dimerisation domain n=1 Tax=Thermococcus
sp. AM4 RepID=B7R325_9EURY
Length = 260
Score = 71.6 bits (174), Expect = 2e-11
Identities = 36/69 (52%), Positives = 46/69 (66%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+ +I E + D +F LR D ANALRR +++EVPT A+D VE N S L DE IAH
Sbjct: 3 PKFEILERRGDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 239 RLGLIPLTS 265
RL +IPLT+
Sbjct: 63 RLAMIPLTT 71
[184][TOP]
>UniRef100_C1BKA8 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BKA8_OSMMO
Length = 351
Score = 71.2 bits (173), Expect = 3e-11
Identities = 32/69 (46%), Positives = 51/69 (73%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
R+ I E+ + F++ DA+IANA RR+M++EVPT+A++ V I N+S++ DE +AHR
Sbjct: 51 RIDIVEMDETTMEFDMVGIDAAIANAFRRIMLAEVPTMAVEKVYIYNNTSIIQDEILAHR 110
Query: 242 LGLIPLTSE 268
LGLIP+ ++
Sbjct: 111 LGLIPIKAD 119
[185][TOP]
>UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2
Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO
Length = 346
Score = 71.2 bits (173), Expect = 3e-11
Identities = 34/64 (53%), Positives = 47/64 (73%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+K + + FEL+ DA+I NALRR++ISEVPT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 61 LKFLSVSPERVVFELKGVDAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDEVLAHRL 120
Query: 245 GLIP 256
GLIP
Sbjct: 121 GLIP 124
[186][TOP]
>UniRef100_B3S4F3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S4F3_TRIAD
Length = 349
Score = 71.2 bits (173), Expect = 3e-11
Identities = 33/75 (44%), Positives = 55/75 (73%)
Frame = +2
Query: 44 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 223
S+ + +++I ++ ++ F++ DASIANA RR+M+SEVP +AI+ V I N+S++ D
Sbjct: 42 SFRKNFKIEIIKVDNEEMEFDMIGIDASIANAYRRIMLSEVPAMAIEKVVIHNNTSIIQD 101
Query: 224 EFIAHRLGLIPLTSE 268
E +AHRLGLIP+ ++
Sbjct: 102 EVLAHRLGLIPIAAD 116
[187][TOP]
>UniRef100_C1GK69 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GK69_PARBD
Length = 380
Score = 71.2 bits (173), Expect = 3e-11
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +2
Query: 95 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 262
A F L DASIANA RR++ISE+P++AI+ V I N+SV+ DE +AHRLGL+PLT
Sbjct: 64 ASFSLIGVDASIANAFRRILISEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLT 119
[188][TOP]
>UniRef100_A5DTC9 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5DTC9_LODEL
Length = 336
Score = 71.2 bits (173), Expect = 3e-11
Identities = 33/65 (50%), Positives = 48/65 (73%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+KI + + A F+L D SIANA RR+MI+EVP++A + V + +N+SV+ DE +AHR+
Sbjct: 44 IKITNIAERSATFDLIHVDTSIANAFRRIMIAEVPSVAAETVYLYMNTSVIQDEVLAHRI 103
Query: 245 GLIPL 259
GLIPL
Sbjct: 104 GLIPL 108
[189][TOP]
>UniRef100_UPI00019857F6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI00019857F6
Length = 372
Score = 70.9 bits (172), Expect = 4e-11
Identities = 33/69 (47%), Positives = 51/69 (73%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
RV++ L +D F++ D SIANA RR++I+E+PT+AI+ V I N+S++ DE +AHR
Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125
Query: 242 LGLIPLTSE 268
LGLIP+ ++
Sbjct: 126 LGLIPINAD 134
[190][TOP]
>UniRef100_UPI00004DA7E9 DNA-directed RNA polymerases I and III subunit RPAC1 (RNA
polymerases I and III subunit AC1) (DNA-directed RNA
polymerase I subunit C) (DNA- directed RNA polymerases I
and III 40 kDa polypeptide) (RPA40) (RPA39) (RPC40)
(AC40). n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI00004DA7E9
Length = 347
Score = 70.9 bits (172), Expect = 4e-11
Identities = 31/66 (46%), Positives = 50/66 (75%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
R+ I +++ D F++ DASIANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RIDIVKMEGDTLEFDMVGIDASIANAFRRILLAEVPTMAVEKVYVYNNTSIIQDEILAHR 109
Query: 242 LGLIPL 259
LGLIP+
Sbjct: 110 LGLIPI 115
[191][TOP]
>UniRef100_C5XXF5 Putative uncharacterized protein Sb04g006420 n=1 Tax=Sorghum
bicolor RepID=C5XXF5_SORBI
Length = 370
Score = 70.9 bits (172), Expect = 4e-11
Identities = 33/69 (47%), Positives = 52/69 (75%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+++I L +D F++ DASIANA RR++I+EVPT+AI+ + + N+SV+ DE ++HR
Sbjct: 71 KIEINRLTEDDMEFDMIGIDASIANAFRRILIAEVPTMAIEKIFMVDNTSVIADEVLSHR 130
Query: 242 LGLIPLTSE 268
LGLIPL ++
Sbjct: 131 LGLIPLRAD 139
[192][TOP]
>UniRef100_A9T5P0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9T5P0_PHYPA
Length = 360
Score = 70.9 bits (172), Expect = 4e-11
Identities = 33/69 (47%), Positives = 52/69 (75%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
RV+I + ++ F++ DA+IANA RR++I+EVPT+AI+ V I N+SV+ DE +AHR
Sbjct: 62 RVEIISMNEEDIEFDIVGIDAAIANAFRRILIAEVPTMAIEKVYIANNTSVIQDEVLAHR 121
Query: 242 LGLIPLTSE 268
LGL+P+ ++
Sbjct: 122 LGLLPIKAD 130
[193][TOP]
>UniRef100_A7Q9B1 Chromosome chr19 scaffold_66, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q9B1_VITVI
Length = 362
Score = 70.9 bits (172), Expect = 4e-11
Identities = 33/69 (47%), Positives = 51/69 (73%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
RV++ L +D F++ D SIANA RR++I+E+PT+AI+ V I N+S++ DE +AHR
Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125
Query: 242 LGLIPLTSE 268
LGLIP+ ++
Sbjct: 126 LGLIPINAD 134
[194][TOP]
>UniRef100_Q4PBM5 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4PBM5_USTMA
Length = 320
Score = 70.9 bits (172), Expect = 4e-11
Identities = 34/66 (51%), Positives = 49/66 (74%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+V + L D F+L DASIANA+RRV+++EVPT+AI+ V I N+S++ DE ++HR
Sbjct: 94 KVIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 153
Query: 242 LGLIPL 259
LGL+PL
Sbjct: 154 LGLVPL 159
[195][TOP]
>UniRef100_Q8U0E4 DNA-directed RNA polymerase subunit D n=1 Tax=Pyrococcus furiosus
RepID=RPOD_PYRFU
Length = 261
Score = 70.9 bits (172), Expect = 4e-11
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
V+I E K+D +F L+ S ANALRR ++ EVPT A+D VE N S L DE IAHRL
Sbjct: 6 VQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 65
Query: 245 GLIPLTS 265
+IPLT+
Sbjct: 66 AMIPLTT 72
[196][TOP]
>UniRef100_A1L3C2 Polr1c protein n=2 Tax=Mus musculus RepID=A1L3C2_MOUSE
Length = 347
Score = 70.5 bits (171), Expect = 6e-11
Identities = 30/69 (43%), Positives = 52/69 (75%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
RV + ++ +D F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 51 RVDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 110
Query: 242 LGLIPLTSE 268
LGLIP+ ++
Sbjct: 111 LGLIPILAD 119
[197][TOP]
>UniRef100_B9S9W7 DNA-directed RNA polymerase I/III subunits, putative n=1
Tax=Ricinus communis RepID=B9S9W7_RICCO
Length = 374
Score = 70.5 bits (171), Expect = 6e-11
Identities = 33/69 (47%), Positives = 52/69 (75%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+V++ +L D F++ DA+IANA RR++ISE+PT+AI+ V I N+S++ DE +AHR
Sbjct: 76 KVEVIQLTKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEVLAHR 135
Query: 242 LGLIPLTSE 268
LGLIP+ ++
Sbjct: 136 LGLIPINAD 144
[198][TOP]
>UniRef100_Q5KG24 RNA polymerase II subunit 3, putative n=1 Tax=Filobasidiella
neoformans RepID=Q5KG24_CRYNE
Length = 377
Score = 70.5 bits (171), Expect = 6e-11
Identities = 37/69 (53%), Positives = 48/69 (69%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
PR+ +R L + A F L + + AN+LRRVM+++VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 239 RLGLIPLTS 265
RLGLIPL S
Sbjct: 85 RLGLIPLIS 93
[199][TOP]
>UniRef100_Q55RL9 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q55RL9_CRYNE
Length = 377
Score = 70.5 bits (171), Expect = 6e-11
Identities = 37/69 (53%), Positives = 48/69 (69%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
PR+ +R L + A F L + + AN+LRRVM+++VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 239 RLGLIPLTS 265
RLGLIPL S
Sbjct: 85 RLGLIPLIS 93
[200][TOP]
>UniRef100_C4V751 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4V751_NOSCE
Length = 293
Score = 70.5 bits (171), Expect = 6e-11
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Frame = +2
Query: 56 MPRVKIRELKDD--MARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEF 229
M +K+ +K + + F+L D S+ANALRR++I+E+PT AI+ V I N+SVL DEF
Sbjct: 27 MENIKLDIIKKEHLVLEFDLVGVDCSVANALRRILINEIPTFAIENVFIFDNTSVLPDEF 86
Query: 230 IAHRLGLIPL 259
+AHRLGLIPL
Sbjct: 87 LAHRLGLIPL 96
[201][TOP]
>UniRef100_A3DMQ6 DNA-directed RNA polymerase, subunit D n=1 Tax=Staphylothermus
marinus F1 RepID=A3DMQ6_STAMF
Length = 280
Score = 70.5 bits (171), Expect = 6e-11
Identities = 34/60 (56%), Positives = 45/60 (75%)
Frame = +2
Query: 98 RFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 277
R ++D + N++RR +I+EVPT+AID V +NSSV DE+IAHRLGLIPLTSE A+
Sbjct: 14 RLYIKDIPLHVLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAAL 73
[202][TOP]
>UniRef100_UPI000151BDE7 conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151BDE7
Length = 333
Score = 70.1 bits (170), Expect = 7e-11
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+ I L + A F+L + D S+ANA RR+MISEVP++A + V I N+SV+ DE +AHR+
Sbjct: 42 INISHLTERTANFDLINIDTSVANAFRRIMISEVPSVAAESVYIFNNTSVIQDEVLAHRI 101
Query: 245 GLIPL 259
GLIPL
Sbjct: 102 GLIPL 106
[203][TOP]
>UniRef100_UPI0000DF0848 Os02g0723600 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DF0848
Length = 327
Score = 70.1 bits (170), Expect = 7e-11
Identities = 34/69 (49%), Positives = 52/69 (75%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+V+I L +D F++ DASIANA RR++I+E+PT+AI+ V + N+SV+ DE ++HR
Sbjct: 71 KVEISRLTEDDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHR 130
Query: 242 LGLIPLTSE 268
LGLIPL ++
Sbjct: 131 LGLIPLDAD 139
[204][TOP]
>UniRef100_O08521 Homologous to 40kD subunit of RNA-polymerase I and III (Fragment)
n=1 Tax=Cricetulus griseus RepID=O08521_CRIGR
Length = 347
Score = 70.1 bits (170), Expect = 7e-11
Identities = 31/72 (43%), Positives = 51/72 (70%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+V I L + FE+ DASIANA RR++I+E+PT+A + V I N+S++ DE ++HR
Sbjct: 46 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 105
Query: 242 LGLIPLTSERAM 277
+GL+P++++ M
Sbjct: 106 IGLVPISADPDM 117
[205][TOP]
>UniRef100_Q6Z5L9 Os02g0723600 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q6Z5L9_ORYSJ
Length = 300
Score = 70.1 bits (170), Expect = 7e-11
Identities = 34/69 (49%), Positives = 52/69 (75%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+V+I L +D F++ DASIANA RR++I+E+PT+AI+ V + N+SV+ DE ++HR
Sbjct: 71 KVEISRLTEDDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHR 130
Query: 242 LGLIPLTSE 268
LGLIPL ++
Sbjct: 131 LGLIPLDAD 139
[206][TOP]
>UniRef100_C6TAS0 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6TAS0_SOYBN
Length = 388
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/75 (44%), Positives = 53/75 (70%)
Frame = +2
Query: 44 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 223
S+ +V+++ L D F++ D +IANA RR++I+EVPT+AI+ V I N+SV+ D
Sbjct: 76 SFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQD 135
Query: 224 EFIAHRLGLIPLTSE 268
E ++HRLGLIP+ ++
Sbjct: 136 EVLSHRLGLIPIRAD 150
[207][TOP]
>UniRef100_B8AHP1 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AHP1_ORYSI
Length = 332
Score = 70.1 bits (170), Expect = 7e-11
Identities = 34/69 (49%), Positives = 52/69 (75%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+V+I L +D F++ DASIANA RR++I+E+PT+AI+ V + N+SV+ DE ++HR
Sbjct: 71 KVEISRLTEDDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHR 130
Query: 242 LGLIPLTSE 268
LGLIPL ++
Sbjct: 131 LGLIPLDAD 139
[208][TOP]
>UniRef100_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
n=1 Tax=Trichomonas vaginalis G3 RepID=A2F4R6_TRIVA
Length = 322
Score = 70.1 bits (170), Expect = 7e-11
Identities = 36/72 (50%), Positives = 46/72 (63%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P++ + + F L + ANALRRVMI+EVPT+A+D VE N+S L DE+IAH
Sbjct: 13 PQIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAH 72
Query: 239 RLGLIPLTSERA 274
RL LIP SE A
Sbjct: 73 RLALIPFVSEDA 84
[209][TOP]
>UniRef100_A0D420 Chromosome undetermined scaffold_37, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D420_PARTE
Length = 316
Score = 70.1 bits (170), Expect = 7e-11
Identities = 34/74 (45%), Positives = 52/74 (70%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
+ R + I D+ FE+ + DA IAN+LRR+MI+E+PT+AI V++ N+SV+ DE
Sbjct: 27 FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86
Query: 227 FIAHRLGLIPLTSE 268
+AHRLGLIP+ ++
Sbjct: 87 VLAHRLGLIPIIAD 100
[210][TOP]
>UniRef100_A0D2I2 Chromosome undetermined scaffold_35, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D2I2_PARTE
Length = 316
Score = 70.1 bits (170), Expect = 7e-11
Identities = 34/74 (45%), Positives = 52/74 (70%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
+ R + I D+ FE+ + DA IAN+LRR+MI+E+PT+AI V++ N+SV+ DE
Sbjct: 27 FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86
Query: 227 FIAHRLGLIPLTSE 268
+AHRLGLIP+ ++
Sbjct: 87 VLAHRLGLIPIIAD 100
[211][TOP]
>UniRef100_Q75A87 ADR031Cp n=1 Tax=Eremothecium gossypii RepID=Q75A87_ASHGO
Length = 364
Score = 70.1 bits (170), Expect = 7e-11
Identities = 35/71 (49%), Positives = 49/71 (69%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
+ R V+I+ L + A F+L D SIANA RR+MISEVP++A + V N+SV+ DE
Sbjct: 66 FRRTMDVQIKSLDEREANFDLLRVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVIQDE 125
Query: 227 FIAHRLGLIPL 259
+AHR+GL+PL
Sbjct: 126 VLAHRIGLVPL 136
[212][TOP]
>UniRef100_C6HA00 DNA-directed RNA polymerase I and III n=1 Tax=Ajellomyces
capsulatus H143 RepID=C6HA00_AJECH
Length = 380
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +2
Query: 95 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 262
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLT 119
[213][TOP]
>UniRef100_C5GBG6 DNA-directed RNA polymerase I and III polypeptide n=2
Tax=Ajellomyces dermatitidis RepID=C5GBG6_AJEDR
Length = 380
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +2
Query: 95 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 262
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLT 119
[214][TOP]
>UniRef100_C5FSZ3 DNA-directed RNA polymerase I and III subunit RPAC1 n=1
Tax=Microsporum canis CBS 113480 RepID=C5FSZ3_NANOT
Length = 380
Score = 70.1 bits (170), Expect = 7e-11
Identities = 37/67 (55%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Frame = +2
Query: 65 VKIRELKDDM--ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
+KI K+D A F L DA+IANA RR++I+E+PT+AI+ V I+ N+SV+ DE +AH
Sbjct: 52 LKIEFHKNDPLEASFSLIGVDAAIANAFRRILIAEIPTLAIEYVYIQNNTSVIQDEVLAH 111
Query: 239 RLGLIPL 259
RLGLIPL
Sbjct: 112 RLGLIPL 118
[215][TOP]
>UniRef100_C1H4P1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H4P1_PARBA
Length = 380
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +2
Query: 95 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 262
A F L DASIANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT
Sbjct: 64 ASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLT 119
[216][TOP]
>UniRef100_C0SF50 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SF50_PARBP
Length = 345
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +2
Query: 95 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 262
A F L DASIANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT
Sbjct: 29 ASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLT 84
[217][TOP]
>UniRef100_C0NBQ0 DNA-directed RNA polymerase I and III polypeptide n=1
Tax=Ajellomyces capsulatus G186AR RepID=C0NBQ0_AJECG
Length = 380
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +2
Query: 95 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 262
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLT 119
[218][TOP]
>UniRef100_A7TDY1 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TDY1_VANPO
Length = 335
Score = 70.1 bits (170), Expect = 7e-11
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 11/95 (11%)
Frame = +2
Query: 8 VADTEKETMEGVSYARMPRVKIRELKDDM-----------ARFELRDTDASIANALRRVM 154
V +T G S + + + KDD+ A F+L + D SIANA RR+M
Sbjct: 12 VTNTTSTDFPGFSKDDLNAWDVNKFKDDLEINISSINSREANFDLINIDTSIANAFRRIM 71
Query: 155 ISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 259
ISEVP++A++ V N+SVL DE +AHR+GL+PL
Sbjct: 72 ISEVPSVAVEYVYFLNNTSVLQDEVLAHRIGLVPL 106
[219][TOP]
>UniRef100_A6R4R6 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Ajellomyces capsulatus NAm1 RepID=A6R4R6_AJECN
Length = 380
Score = 70.1 bits (170), Expect = 7e-11
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +2
Query: 95 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 262
A F L DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLT 119
[220][TOP]
>UniRef100_A5DPW5 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DPW5_PICGU
Length = 333
Score = 70.1 bits (170), Expect = 7e-11
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+ I L + A F+L + D S+ANA RR+MISEVP++A + V I N+SV+ DE +AHR+
Sbjct: 42 INISHLTERTANFDLINIDTSVANAFRRIMISEVPSVAAESVYIFNNTSVIQDEVLAHRI 101
Query: 245 GLIPL 259
GLIPL
Sbjct: 102 GLIPL 106
[221][TOP]
>UniRef100_Q0W1V3 DNA-directed RNA polymerase, subunit D n=1 Tax=uncultured
methanogenic archaeon RC-I RepID=Q0W1V3_UNCMA
Length = 262
Score = 70.1 bits (170), Expect = 7e-11
Identities = 38/72 (52%), Positives = 50/72 (69%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+++I ELKD A+F L D + AN LRR MI++VP +AID V+I N+SVL DE +A R
Sbjct: 2 KLEIIELKDRKAKFVLTDVTPAFANGLRRAMIADVPKMAIDYVDIYDNTSVLFDEMLALR 61
Query: 242 LGLIPLTSERAM 277
LGLIPL + M
Sbjct: 62 LGLIPLKTNLDM 73
[222][TOP]
>UniRef100_O94616 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAC1_SCHPO
Length = 348
Score = 70.1 bits (170), Expect = 7e-11
Identities = 31/72 (43%), Positives = 51/72 (70%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+V I L + FE+ DASIANA RR++I+E+PT+A + V I N+S++ DE ++HR
Sbjct: 47 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106
Query: 242 LGLIPLTSERAM 277
+GL+P++++ M
Sbjct: 107 IGLVPISADPDM 118
[223][TOP]
>UniRef100_Q9AW23 DNA-directed RNA polymerase II n=1 Tax=Guillardia theta
RepID=Q9AW23_GUITH
Length = 299
Score = 69.7 bits (169), Expect = 9e-11
Identities = 33/70 (47%), Positives = 48/70 (68%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+K+ ++ D + + AN++RR+M++E+PT+AID V IE N+S DEFIAHRL
Sbjct: 1 MKVEKISDFEIKINFNNFPIVYANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRL 60
Query: 245 GLIPLTSERA 274
GLIP+ SE A
Sbjct: 61 GLIPIFSENA 70
[224][TOP]
>UniRef100_C6T9J6 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T9J6_SOYBN
Length = 233
Score = 69.7 bits (169), Expect = 9e-11
Identities = 32/75 (42%), Positives = 53/75 (70%)
Frame = +2
Query: 44 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 223
S+ +V+++ L D F++ D +IANA RR++++EVPT+AI+ V I N+SV+ D
Sbjct: 81 SFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILVAEVPTMAIERVYIANNTSVVQD 140
Query: 224 EFIAHRLGLIPLTSE 268
E ++HRLGLIP+ ++
Sbjct: 141 EVLSHRLGLIPIRAD 155
[225][TOP]
>UniRef100_C5DLD4 KLTH0F12056p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DLD4_LACTC
Length = 350
Score = 69.7 bits (169), Expect = 9e-11
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
V I L D A F+L + DASIANA RR+MI+EVP++A + V N+SV+ DE +AHR+
Sbjct: 58 VNITSLDDREANFDLVNVDASIANAFRRIMIAEVPSVAAEYVYFFNNTSVIQDEVLAHRI 117
Query: 245 GLIPL 259
GL PL
Sbjct: 118 GLTPL 122
[226][TOP]
>UniRef100_B8D6F8 DNA-directed RNA polymerase subunit D n=1 Tax=Desulfurococcus
kamchatkensis 1221n RepID=B8D6F8_DESK1
Length = 280
Score = 69.7 bits (169), Expect = 9e-11
Identities = 35/71 (49%), Positives = 46/71 (64%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+ I E + LRD + N+LRR ++SEVPT+A+D V I NSSV DE+I+HRL
Sbjct: 3 IDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRL 62
Query: 245 GLIPLTSERAM 277
GLIPL S A+
Sbjct: 63 GLIPLKSNEAL 73
[227][TOP]
>UniRef100_Q10MU3 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q10MU3_ORYSJ
Length = 352
Score = 69.3 bits (168), Expect = 1e-10
Identities = 33/69 (47%), Positives = 51/69 (73%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+V + L +D F++ DAS+ANA RR++I+EVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 73 KVVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHR 132
Query: 242 LGLIPLTSE 268
LGLIPL ++
Sbjct: 133 LGLIPLDAD 141
[228][TOP]
>UniRef100_Q10MU2 Os03g0295400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q10MU2_ORYSJ
Length = 379
Score = 69.3 bits (168), Expect = 1e-10
Identities = 33/69 (47%), Positives = 51/69 (73%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
+V + L +D F++ DAS+ANA RR++I+EVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 73 KVVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHR 132
Query: 242 LGLIPLTSE 268
LGLIPL ++
Sbjct: 133 LGLIPLDAD 141
[229][TOP]
>UniRef100_C4XY85 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY85_CLAL4
Length = 333
Score = 69.3 bits (168), Expect = 1e-10
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+ I+ + A F+LR D SIANA RR+MI+EVP++A + V + N+SV+ DE +AHR+
Sbjct: 41 IDIKYIAGRNANFDLRHIDTSIANAFRRIMIAEVPSVAAETVYVFNNTSVIQDEVLAHRI 100
Query: 245 GLIPL 259
GLIPL
Sbjct: 101 GLIPL 105
[230][TOP]
>UniRef100_Q12ZR3 DNA-directed RNA polymerase subunit D n=1 Tax=Methanococcoides
burtonii DSM 6242 RepID=Q12ZR3_METBU
Length = 267
Score = 69.3 bits (168), Expect = 1e-10
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+ I EL D A+F L +T A+ AN +RR M+++VPT+AID V I N+SVL DE +A RL
Sbjct: 3 IDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLALRL 62
Query: 245 GLIPLTS 265
GLIPLT+
Sbjct: 63 GLIPLTT 69
[231][TOP]
>UniRef100_B6YSQ3 DNA-directed RNA polymerase, subunit D n=1 Tax=Thermococcus
onnurineus NA1 RepID=B6YSQ3_THEON
Length = 260
Score = 69.3 bits (168), Expect = 1e-10
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P+ +I E ++D +F + D ANALRR +++EVPT A+D VE N S L DE IAH
Sbjct: 3 PKFRILEKREDSIKFIVEGIDIPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 239 RLGLIPLTS 265
RL +IPLT+
Sbjct: 63 RLAMIPLTT 71
[232][TOP]
>UniRef100_UPI000186AA5B hypothetical protein BRAFLDRAFT_133039 n=1 Tax=Branchiostoma
floridae RepID=UPI000186AA5B
Length = 308
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/69 (46%), Positives = 50/69 (72%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
RV I L+ F++ DA+IANA RR++++EVPT+AI+ V + N+S++ DE +AHR
Sbjct: 47 RVNIVSLEGSELEFDMVGIDAAIANAFRRILLAEVPTMAIEKVFVHNNTSIIQDEVLAHR 106
Query: 242 LGLIPLTSE 268
LGLIP+ ++
Sbjct: 107 LGLIPIHAD 115
[233][TOP]
>UniRef100_UPI000023F302 hypothetical protein FG00365.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F302
Length = 381
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/60 (53%), Positives = 45/60 (75%)
Frame = +2
Query: 92 MARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 271
++ F L DAS+ANA RR+++SE+PT+A++ V IE N+SV+ DE +AHRLGLIP R
Sbjct: 70 LSSFSLVGIDASLANAFRRILLSEIPTLAVENVYIENNTSVIQDEVLAHRLGLIPFKGGR 129
[234][TOP]
>UniRef100_Q7RN53 DNA-directed RNA polymerases i and iii 40 kDa polypeptide n=1
Tax=Plasmodium yoelii yoelii RepID=Q7RN53_PLAYO
Length = 286
Score = 68.9 bits (167), Expect = 2e-10
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+KI + ++++ E+++ + SIANALRR+MISEVPTIAI+ V I N+ V+ DE + HRL
Sbjct: 1 MKIIKNEENLLILEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRL 60
Query: 245 GLIP 256
GLIP
Sbjct: 61 GLIP 64
[235][TOP]
>UniRef100_Q4YX04 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium berghei
RepID=Q4YX04_PLABE
Length = 334
Score = 68.9 bits (167), Expect = 2e-10
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+KI + ++++ E+++ + SIANALRR+MISEVPTIAI+ V I N+ V+ DE + HRL
Sbjct: 50 MKIIKNEENLLILEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRL 109
Query: 245 GLIP 256
GLIP
Sbjct: 110 GLIP 113
[236][TOP]
>UniRef100_Q4XZH2 DNA-directed RNA polymerase I, putative (Fragment) n=1
Tax=Plasmodium chabaudi RepID=Q4XZH2_PLACH
Length = 297
Score = 68.9 bits (167), Expect = 2e-10
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+KI + ++++ E+++ + SIANALRR+MISEVPTIAI+ V I N+ V+ DE + HRL
Sbjct: 50 MKIIKNEENLLILEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRL 109
Query: 245 GLIP 256
GLIP
Sbjct: 110 GLIP 113
[237][TOP]
>UniRef100_Q4XH79 Putative uncharacterized protein n=1 Tax=Plasmodium chabaudi
RepID=Q4XH79_PLACH
Length = 126
Score = 68.9 bits (167), Expect = 2e-10
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+KI + ++++ E+++ + SIANALRR+MISEVPTIAI+ V I N+ V+ DE + HRL
Sbjct: 50 MKIIKNEENLLILEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRL 109
Query: 245 GLIP 256
GLIP
Sbjct: 110 GLIP 113
[238][TOP]
>UniRef100_C5LDA1 DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LDA1_9ALVE
Length = 365
Score = 68.9 bits (167), Expect = 2e-10
Identities = 30/71 (42%), Positives = 50/71 (70%)
Frame = +2
Query: 47 YARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 226
+ R ++K++ D++ ++ D IANALRR+MI+E+PTIAI+ + N+ V++DE
Sbjct: 50 FQRRLKMKVQRASDEVVEVDVVGIDPPIANALRRIMIAEIPTIAIEKCYVYQNTGVIHDE 109
Query: 227 FIAHRLGLIPL 259
+AHRLGL+P+
Sbjct: 110 ILAHRLGLVPI 120
[239][TOP]
>UniRef100_B0EJB9 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Entamoeba dispar SAW760 RepID=B0EJB9_ENTDI
Length = 291
Score = 68.9 bits (167), Expect = 2e-10
Identities = 33/68 (48%), Positives = 48/68 (70%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+KI E + F+ D S+AN LRR+MI+EVPT+AI++V +E NSS + DE + HRL
Sbjct: 8 IKISE-SPEKVEFDAMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHRL 66
Query: 245 GLIPLTSE 268
GLIP+ ++
Sbjct: 67 GLIPILAD 74
[240][TOP]
>UniRef100_Q2HFB1 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2HFB1_CHAGB
Length = 374
Score = 68.9 bits (167), Expect = 2e-10
Identities = 36/71 (50%), Positives = 49/71 (69%)
Frame = +2
Query: 44 SYARMPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLND 223
S+ R RV+ + A F L DASIANA RR+MI+++PT+AI+ V I N+SV+ D
Sbjct: 47 SFRRGFRVEFHQNDPYEASFSLIGIDASIANAFRRIMIADIPTLAIETVFINNNTSVIQD 106
Query: 224 EFIAHRLGLIP 256
E ++HRLGLIP
Sbjct: 107 EVLSHRLGLIP 117
[241][TOP]
>UniRef100_C5DTY7 ZYRO0C12364p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DTY7_ZYGRC
Length = 335
Score = 68.9 bits (167), Expect = 2e-10
Identities = 34/65 (52%), Positives = 46/65 (70%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
V+I L + A F+L D SIANA RR+MISEVP++A + V N+SV+ DE +AHR+
Sbjct: 42 VRIGSLTEREANFDLVHVDTSIANAFRRIMISEVPSVATEYVYFLNNTSVIQDEVLAHRI 101
Query: 245 GLIPL 259
GL+PL
Sbjct: 102 GLVPL 106
[242][TOP]
>UniRef100_B2A971 Predicted CDS Pa_1_8610 n=1 Tax=Podospora anserina
RepID=B2A971_PODAN
Length = 372
Score = 68.9 bits (167), Expect = 2e-10
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +2
Query: 95 ARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 271
A F L DASIANA RR+MI++VPT+AI+ V + N+SV+ DE +AHRLGLIP T R
Sbjct: 64 ASFSLIGIDASIANAFRRIMIADVPTLAIENVFVWNNTSVIQDEVLAHRLGLIPFTGGR 122
[243][TOP]
>UniRef100_UPI000194C203 PREDICTED: polymerase (RNA) I polypeptide C, 30kDa n=1
Tax=Taeniopygia guttata RepID=UPI000194C203
Length = 346
Score = 68.6 bits (166), Expect = 2e-10
Identities = 30/69 (43%), Positives = 51/69 (73%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
RV + ++D F++ DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVIREEEDALEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109
Query: 242 LGLIPLTSE 268
LGLIP+ ++
Sbjct: 110 LGLIPIRAD 118
[244][TOP]
>UniRef100_C1MRA1 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MRA1_9CHLO
Length = 410
Score = 68.6 bits (166), Expect = 2e-10
Identities = 31/69 (44%), Positives = 50/69 (72%)
Frame = +2
Query: 62 RVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHR 241
++++ L D+ FE++ +IANA RR++I+EVPT+AI+ V + N+SV+ DE AHR
Sbjct: 80 KLEVTHLDDEKVEFEMQGLSPAIANAFRRILIAEVPTMAIEKVFMVNNTSVIQDEVFAHR 139
Query: 242 LGLIPLTSE 268
LGLIP+ ++
Sbjct: 140 LGLIPIRAD 148
[245][TOP]
>UniRef100_Q235X0 DNA-directed RNA polymerase I 40 kDa polypeptide n=1
Tax=Tetrahymena thermophila SB210 RepID=Q235X0_TETTH
Length = 336
Score = 68.6 bits (166), Expect = 2e-10
Identities = 34/62 (54%), Positives = 46/62 (74%)
Frame = +2
Query: 83 KDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 262
K+ F+L DA IANALRR+MI+EVPT+AI V I N+S++ DE +AHRLGLIP+
Sbjct: 54 KNKELEFDLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLGLIPIY 113
Query: 263 SE 268
++
Sbjct: 114 AD 115
[246][TOP]
>UniRef100_C6LU00 DNA-directed RNA polymerase RPB3 n=1 Tax=Giardia intestinalis ATCC
50581 RepID=C6LU00_GIALA
Length = 326
Score = 68.6 bits (166), Expect = 2e-10
Identities = 34/67 (50%), Positives = 44/67 (65%)
Frame = +2
Query: 59 PRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAH 238
P +KI D E+R D S N LRR + ++VPT+AID+V+ NS+ L +EFIAH
Sbjct: 3 PSIKILSKTDLKLELEIRGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIAH 62
Query: 239 RLGLIPL 259
RLGLIPL
Sbjct: 63 RLGLIPL 69
[247][TOP]
>UniRef100_Q6BV37 DEHA2C05654p n=1 Tax=Debaryomyces hansenii RepID=Q6BV37_DEBHA
Length = 335
Score = 68.6 bits (166), Expect = 2e-10
Identities = 33/65 (50%), Positives = 46/65 (70%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+ I L + + F+L D SIANA RR+MISEVP++A + V + N+SV+ DE +AHR+
Sbjct: 43 INISHLSERSSTFDLIHIDTSIANAFRRIMISEVPSVAAETVYVFNNTSVIQDEVLAHRI 102
Query: 245 GLIPL 259
GLIPL
Sbjct: 103 GLIPL 107
[248][TOP]
>UniRef100_A3GGP5 RNA polymerase III (C) subunit n=1 Tax=Pichia stipitis
RepID=A3GGP5_PICST
Length = 336
Score = 68.6 bits (166), Expect = 2e-10
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+ I D A F+L + D +IANA RR+MISEVP++A + V + +N+SV+ DE +AHR+
Sbjct: 44 INISYKTDRTANFDLINIDTAIANAFRRIMISEVPSVAAEAVYMFMNTSVIQDEVLAHRI 103
Query: 245 GLIPL 259
GLIPL
Sbjct: 104 GLIPL 108
[249][TOP]
>UniRef100_A3CWH9 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanoculleus
marisnigri JR1 RepID=A3CWH9_METMJ
Length = 276
Score = 68.6 bits (166), Expect = 2e-10
Identities = 36/68 (52%), Positives = 46/68 (67%)
Frame = +2
Query: 65 VKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRL 244
+ L + +A+F L S AN LRR MISEVPT+AI+ V I N+SVL DE +AHRL
Sbjct: 3 IAFSRLDERVAKFTLSGVSMSFANMLRRAMISEVPTLAIEDVRIYDNTSVLFDEMLAHRL 62
Query: 245 GLIPLTSE 268
GLIPL ++
Sbjct: 63 GLIPLRTD 70
[250][TOP]
>UniRef100_Q5JJF4 DNA-directed RNA polymerase subunit D n=1 Tax=Thermococcus
kodakarensis RepID=RPOD_PYRKO
Length = 259
Score = 68.6 bits (166), Expect = 2e-10
Identities = 36/70 (51%), Positives = 44/70 (62%)
Frame = +2
Query: 56 MPRVKIRELKDDMARFELRDTDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIA 235
M KI E + D +F + D ANALRR ++SEVPT A+D VE N S L DE IA
Sbjct: 1 MVEFKILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIA 60
Query: 236 HRLGLIPLTS 265
HRL +IPLT+
Sbjct: 61 HRLAMIPLTT 70