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[1][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 248 bits (634), Expect = 1e-64
Identities = 125/137 (91%), Positives = 129/137 (94%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR
Sbjct: 29 TDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCDACDGDGQCEFCSVEFHLR KCMTDETLDVTSKDL SSDHTVVPVDFS + DSA
Sbjct: 89 DCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDFSDSSGYDSADK 148
Query: 363 KGIIIVKLRRGQELRLR 413
KGIIIVKLRRGQELRLR
Sbjct: 149 KGIIIVKLRRGQELRLR 165
[2][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 247 bits (631), Expect = 3e-64
Identities = 124/137 (90%), Positives = 129/137 (94%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM+MRFSR
Sbjct: 29 TDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSR 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCDACDGDGQCEFCSVEFHLR KCMTDETLDVTSKDL SSDHTVVPVDFS + DSA
Sbjct: 89 DCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDFSDSSGYDSADK 148
Query: 363 KGIIIVKLRRGQELRLR 413
KGIIIVKLRRGQELRLR
Sbjct: 149 KGIIIVKLRRGQELRLR 165
[3][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 243 bits (621), Expect = 4e-63
Identities = 119/137 (86%), Positives = 130/137 (94%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM+MRFSR
Sbjct: 29 TDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSR 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCDACDGDGQC++CSVEFHLR KC+TD+TLDVTSKDLYSSDHTVVPVDFS + DS+
Sbjct: 89 DCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKDLYSSDHTVVPVDFSDSSGYDSSEQ 148
Query: 363 KGIIIVKLRRGQELRLR 413
+GIIIVKLRRGQELRLR
Sbjct: 149 RGIIIVKLRRGQELRLR 165
[4][TOP]
>UniRef100_Q45NH1 DNA-directed RNA polymerase II third largest subunit (Fragment) n=1
Tax=Medicago sativa RepID=Q45NH1_MEDSA
Length = 184
Score = 234 bits (598), Expect = 2e-60
Identities = 118/137 (86%), Positives = 126/137 (91%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TDAS+ANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR
Sbjct: 24 TDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 83
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCDACDGDGQCE+CSVEFHLRVKC+TD+TLDV+SKDL SSDHTV PVD +S +
Sbjct: 84 DCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDLISSDHTVTPVDVPGGDASVESDG 143
Query: 363 KGIIIVKLRRGQELRLR 413
+GIIIVKLRRGQELRLR
Sbjct: 144 RGIIIVKLRRGQELRLR 160
[5][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 234 bits (598), Expect = 2e-60
Identities = 119/142 (83%), Positives = 129/142 (90%), Gaps = 5/142 (3%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TDAS+ANALRRVMI+EVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM MRFSR
Sbjct: 29 TDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMGMRFSR 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFS-PDTSSD--- 350
DCDACDGDGQCE+CSVEFHLR KC+TD+TLDVTSKDLYSSDH V+PVDFS P ++D
Sbjct: 89 DCDACDGDGQCEYCSVEFHLRAKCITDQTLDVTSKDLYSSDHAVIPVDFSDPSDANDPFD 148
Query: 351 -SAVNKGIIIVKLRRGQELRLR 413
+ +GIIIVKLRRGQELRLR
Sbjct: 149 HTETQRGIIIVKLRRGQELRLR 170
[6][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 234 bits (597), Expect = 2e-60
Identities = 117/137 (85%), Positives = 126/137 (91%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TDAS+ANALRRVMISEVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR
Sbjct: 29 TDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCDACDGDGQCE+CSVEFHLRVKC+TD+TLDV+SKDL SSDHTV PVD +S +
Sbjct: 89 DCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDLISSDHTVTPVDVPGGDASIESDG 148
Query: 363 KGIIIVKLRRGQELRLR 413
+GIIIVKLRRGQELRLR
Sbjct: 149 RGIIIVKLRRGQELRLR 165
[7][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 231 bits (590), Expect = 1e-59
Identities = 117/138 (84%), Positives = 129/138 (93%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+ANALRRVMISEVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM+MRFSR
Sbjct: 29 TDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSR 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTS-SDSAV 359
DCDACDGDGQCEFCSVEF L KC+TD+TLDVTS+DLYS+D TV PVDF+ D+S SDS+
Sbjct: 89 DCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRDLYSADPTVTPVDFTIDSSVSDSSE 148
Query: 360 NKGIIIVKLRRGQELRLR 413
+KGIIIVKLRRGQEL+LR
Sbjct: 149 HKGIIIVKLRRGQELKLR 166
[8][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 228 bits (582), Expect = 1e-58
Identities = 116/138 (84%), Positives = 128/138 (92%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+ANALRRVMISEVPT+AIDLVEIEVNSSVLNDEFIAHRLGLI LTSERAM+MRFSR
Sbjct: 29 TDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLISLTSERAMSMRFSR 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTS-SDSAV 359
DCDACDGDGQCEFCSVEF L KC+TD+TLDVTS+DLYS+D TV PVDF+ D+S SDS+
Sbjct: 89 DCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRDLYSADPTVTPVDFTIDSSVSDSSE 148
Query: 360 NKGIIIVKLRRGQELRLR 413
+KGIIIVKLRRGQEL+LR
Sbjct: 149 HKGIIIVKLRRGQELKLR 166
[9][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
RepID=A8MR04_ARATH
Length = 235
Score = 203 bits (516), Expect = 6e-51
Identities = 103/138 (74%), Positives = 121/138 (87%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+ANALRRVMISEVPT+AI LV+IEVNSSVLNDEFIA RL LIPLTSERAM+MRF +
Sbjct: 29 TDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAMSMRFCQ 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTS-SDSAV 359
DC+ C+GD CEFCSVEF L KC+TD+TLDVTS+DLYS+D TV PVDF+ ++S SDS+
Sbjct: 89 DCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRDLYSADPTVTPVDFTSNSSTSDSSE 148
Query: 360 NKGIIIVKLRRGQELRLR 413
+KGIII KLRRGQEL+L+
Sbjct: 149 HKGIIIAKLRRGQELKLK 166
[10][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 203 bits (516), Expect = 6e-51
Identities = 103/138 (74%), Positives = 121/138 (87%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+ANALRRVMISEVPT+AI LV+IEVNSSVLNDEFIA RL LIPLTSERAM+MRF +
Sbjct: 29 TDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAMSMRFCQ 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTS-SDSAV 359
DC+ C+GD CEFCSVEF L KC+TD+TLDVTS+DLYS+D TV PVDF+ ++S SDS+
Sbjct: 89 DCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRDLYSADPTVTPVDFTSNSSTSDSSE 148
Query: 360 NKGIIIVKLRRGQELRLR 413
+KGIII KLRRGQEL+L+
Sbjct: 149 HKGIIIAKLRRGQELKLK 166
[11][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 200 bits (509), Expect = 4e-50
Identities = 99/141 (70%), Positives = 119/141 (84%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TDASIANALRR+MI+EVPT+AIDLVEIE NSSVLNDEF+AHRLGLIP+ S+RAM MR SR
Sbjct: 29 TDASIANALRRIMIAEVPTLAIDLVEIESNSSVLNDEFLAHRLGLIPIVSDRAMEMRLSR 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSS----D 350
DCDACDGDG+CE+CS+EFHL VKC D+TLDVTS DL SSD +++PVD + + +
Sbjct: 89 DCDACDGDGRCEYCSIEFHLSVKCTGDQTLDVTSLDLVSSDPSIIPVDAAGRAADMGGFE 148
Query: 351 SAVNKGIIIVKLRRGQELRLR 413
S +GI+IVKLR+GQEL+LR
Sbjct: 149 SNDTRGILIVKLRKGQELKLR 169
[12][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 194 bits (494), Expect = 2e-48
Identities = 104/149 (69%), Positives = 118/149 (79%), Gaps = 12/149 (8%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTS AMAMRFSR
Sbjct: 33 TDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAMAMRFSR 92
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCM-TDETLDVTSKDLYSSDHTVVPVD----------- 326
DCDACDGDG CE+CSVEFHL + +D+TL+VTS DL S+D V PVD
Sbjct: 93 DCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSNDLRSTDPKVCPVDQARAYQHALGG 152
Query: 327 FSPDTSSDSAVNKGIIIVKLRRGQELRLR 413
P ++ +A +GI+IVKLRRGQELRLR
Sbjct: 153 TEPFDTAAAADQRGILIVKLRRGQELRLR 181
[13][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 193 bits (491), Expect = 4e-48
Identities = 104/149 (69%), Positives = 116/149 (77%), Gaps = 12/149 (8%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTS AM MRFSR
Sbjct: 32 TDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAMQMRFSR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCM-TDETLDVTSKDLYSSDHTVVPVD----------- 326
DCDACDGDG CE+CSVEFHL + +D+TL+VTS DL S D V PVD
Sbjct: 92 DCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSNDLRSMDPKVCPVDQARAYQQALGG 151
Query: 327 FSPDTSSDSAVNKGIIIVKLRRGQELRLR 413
P ++ S N+GI+IVKLRRGQELRLR
Sbjct: 152 TDPFGANTSNENRGILIVKLRRGQELRLR 180
[14][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 193 bits (491), Expect = 4e-48
Identities = 105/149 (70%), Positives = 116/149 (77%), Gaps = 12/149 (8%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSSVLNDEFIAHRLGLIPLTS AM MRFSR
Sbjct: 32 TDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAMQMRFSR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCM-TDETLDVTSKDLYSSDHTVVPVD----------- 326
DCDACDGDG CE+CSVEFHL V +D+TL+VTS DL S D V PVD
Sbjct: 92 DCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVTSNDLRSMDPKVCPVDQARAYQHALGG 151
Query: 327 FSPDTSSDSAVNKGIIIVKLRRGQELRLR 413
P ++ S N+GI+IVKLRRGQELRLR
Sbjct: 152 TDPFGANASNENRGILIVKLRRGQELRLR 180
[15][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 150 bits (378), Expect = 6e-35
Identities = 80/138 (57%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+AN+LRR M+ EVPT+A DLVEIE+NSSVL DEFIAHRLGLIPLTS+RAM M F
Sbjct: 45 TDVSMANSLRRCMMVEVPTLAFDLVEIEMNSSVLTDEFIAHRLGLIPLTSDRAMEMVFPS 104
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSD-SAV 359
+CD+C GD C+ C+VEF L VK D DVT +DL SS+ VVPV+ D
Sbjct: 105 ECDSCPGDRSCQNCTVEFLLSVKATEDRIKDVTQRDLKSSNDAVVPVEIDVDKQGVLEEC 164
Query: 360 NKGIIIVKLRRGQELRLR 413
I I KL +GQE+ LR
Sbjct: 165 KMDICIAKLYKGQEITLR 182
[16][TOP]
>UniRef100_UPI0000E4A699 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E4A699
Length = 275
Score = 142 bits (358), Expect = 1e-32
Identities = 78/138 (56%), Positives = 98/138 (71%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+AN++RR +++EVPTIAID VEI+ NSSVL+DEFI+HR+GLIPLTS+ + + F+
Sbjct: 26 TDLSVANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFN 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC + C CSVE L VKC D+T VTS+DL SS+ VVPV SSD
Sbjct: 86 RDCGC---EEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQESSDYGE 142
Query: 360 NKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VDDILIVKLRKGQELRLR 160
[17][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 139 bits (351), Expect = 7e-32
Identities = 80/137 (58%), Positives = 96/137 (70%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+ANALRRVMI+EVPT+ IDLVE E N+SVL DEFIAHRLGLIPL S+ ++R
Sbjct: 31 TDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFIAHRLGLIPLVSDNIDKFCYTR 90
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DC D +C+ CSVE L VKC + DVTS DL S + V+PV S TSS+S
Sbjct: 91 DCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLSQNSAVIPVS-SQVTSSNS--E 144
Query: 363 KGIIIVKLRRGQELRLR 413
+ I IVKLRRGQE++LR
Sbjct: 145 QEIPIVKLRRGQEIKLR 161
[18][TOP]
>UniRef100_UPI0000E48A01 PREDICTED: hypothetical protein isoform 1, partial n=1
Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A01
Length = 246
Score = 137 bits (344), Expect = 5e-31
Identities = 75/134 (55%), Positives = 95/134 (70%), Gaps = 1/134 (0%)
Frame = +3
Query: 15 IANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCD 191
+AN++RR +++EVPTIAID VEI+ NSSVL+DEFI+HR+GLIPLTS+ + + F+RDC
Sbjct: 1 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDCG 60
Query: 192 ACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGI 371
+ C CSVE L VKC D+T VTS+DL SS+ VVPV SSD I
Sbjct: 61 C---EEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQESSDYGEVDDI 117
Query: 372 IIVKLRRGQELRLR 413
+IVKLR+GQELRLR
Sbjct: 118 LIVKLRKGQELRLR 131
[19][TOP]
>UniRef100_Q6IRR3 MGC81245 protein n=1 Tax=Xenopus laevis RepID=Q6IRR3_XENLA
Length = 275
Score = 136 bits (342), Expect = 8e-31
Identities = 79/140 (56%), Positives = 102/140 (72%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DEFIAHR+GLIPLTS+ + +++S
Sbjct: 26 TDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDEFIAHRVGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSA 356
RDC D C CSVEF L V+C D+T VTS+DL S++ V+PV S D +
Sbjct: 86 RDCTC---DEFCPECSVEFTLDVRCTEDQTRHVTSRDLVSNNLRVIPVTSRSRDNDPNDY 142
Query: 357 VNK-GIIIVKLRRGQELRLR 413
V + I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[20][TOP]
>UniRef100_Q6P7Y7 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Xenopus
(Silurana) tropicalis RepID=Q6P7Y7_XENTR
Length = 275
Score = 135 bits (341), Expect = 1e-30
Identities = 79/140 (56%), Positives = 102/140 (72%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DEFIAHR+GLIPLTS+ + +++S
Sbjct: 26 TDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDEFIAHRVGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSA 356
RDC D C CSVEF L V+C D+T VTS+DL S++ V+PV S D +
Sbjct: 86 RDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRDLVSNNLRVIPVTSRSRDNDPNDY 142
Query: 357 VNK-GIIIVKLRRGQELRLR 413
V + I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[21][TOP]
>UniRef100_B5FZ64 Putative DNA directed RNA polymerase II polypeptide C n=1
Tax=Taeniopygia guttata RepID=B5FZ64_TAEGU
Length = 275
Score = 135 bits (341), Expect = 1e-30
Identities = 79/140 (56%), Positives = 101/140 (72%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + M++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSA 356
RDC D C CSVEF L V+C D+T VTS+DL S++ V+PV S D +
Sbjct: 86 RDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDY 142
Query: 357 VNK-GIIIVKLRRGQELRLR 413
V + I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[22][TOP]
>UniRef100_C1BV58 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Lepeophtheirus
salmonis RepID=C1BV58_9MAXI
Length = 279
Score = 135 bits (341), Expect = 1e-30
Identities = 77/141 (54%), Positives = 100/141 (70%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+ANA+RRVMI+E P +AID V++E NS+VL+DEFIAHRLG+IPLTS+ A+ +M++S
Sbjct: 26 TDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDEFIAHRLGMIPLTSDDAVDSMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV---DFSPDTSSD 350
RDC D C C+VEF L VKC + T +VTS DL SSD V+PV + D
Sbjct: 86 RDCTCTD---FCRECAVEFTLDVKCHEETTRNVTSADLKSSDPKVIPVTSRNQEEDGHEY 142
Query: 351 SAVNKGIIIVKLRRGQELRLR 413
N I+IVKLR+GQEL++R
Sbjct: 143 GNENDDILIVKLRKGQELKVR 163
[23][TOP]
>UniRef100_B7QL55 RNA polymerase II, subunit POLR2C/RPB3, putative n=1 Tax=Ixodes
scapularis RepID=B7QL55_IXOSC
Length = 274
Score = 135 bits (339), Expect = 2e-30
Identities = 75/139 (53%), Positives = 99/139 (71%), Gaps = 2/139 (1%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+AN+LRRV I+EV T+AID V++E NS+VL+DEFIAHRLGLIPLTS+ + M++S
Sbjct: 26 TDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDEFIAHRLGLIPLTSDEIVDKMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSA 356
RDC D C CSVEF + VKC+ ++T VT+ DL SSD VVPV D +++
Sbjct: 86 RDCTCAD---FCTECSVEFTIDVKCLDEQTRHVTTADLKSSDPRVVPVTSRHKDDTNEYG 142
Query: 357 VNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQE++ R
Sbjct: 143 ETDDILIVKLRKGQEVKAR 161
[24][TOP]
>UniRef100_UPI00003AA556 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
RepID=UPI00003AA556
Length = 275
Score = 134 bits (338), Expect = 2e-30
Identities = 78/140 (55%), Positives = 101/140 (72%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + M++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSA 356
RDC D C CSVEF L V+C D+T VTS+DL S++ V+PV S D +
Sbjct: 86 RDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDY 142
Query: 357 VNK-GIIIVKLRRGQELRLR 413
V + I+IVKLR+GQEL+LR
Sbjct: 143 VEQDDILIVKLRKGQELKLR 162
[25][TOP]
>UniRef100_Q7ZV11 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Danio
rerio RepID=Q7ZV11_DANRE
Length = 275
Score = 134 bits (337), Expect = 3e-30
Identities = 76/140 (54%), Positives = 101/140 (72%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV +SEVPTIAID V+I+ NSSVL+DEF+AHR+GLIPLTS+ + M++S
Sbjct: 26 TDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDEFVAHRVGLIPLTSDDIVDKMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSA 356
RDC D C CSVE L V+C D+T VTS+DL S++ V+PV S D +
Sbjct: 86 RDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDY 142
Query: 357 VNK-GIIIVKLRRGQELRLR 413
V + I++VKLR+GQELRLR
Sbjct: 143 VEQDDILLVKLRKGQELRLR 162
[26][TOP]
>UniRef100_UPI000001AB34 UPI000001AB34 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI000001AB34
Length = 275
Score = 133 bits (335), Expect = 5e-30
Identities = 74/140 (52%), Positives = 101/140 (72%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV +SEVPTIAID ++I+ NSSVL+DEF+AHR+GLIPLTS+ + +++S
Sbjct: 26 TDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDEFVAHRVGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSA 356
RDC D C CSVE L V+C D+T VTS+DL S++ V+PV S D +
Sbjct: 86 RDCTC---DDFCSECSVELTLDVRCTEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDY 142
Query: 357 VNK-GIIIVKLRRGQELRLR 413
V + I++VKLR+GQELRLR
Sbjct: 143 VEQDDILVVKLRKGQELRLR 162
[27][TOP]
>UniRef100_UPI00005EAD58 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C, 33kDa n=1 Tax=Monodelphis domestica
RepID=UPI00005EAD58
Length = 275
Score = 133 bits (334), Expect = 7e-30
Identities = 76/140 (54%), Positives = 98/140 (70%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVD--FSPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + SD
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNTPRVIPVTSRSRDNDPSDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[28][TOP]
>UniRef100_Q4SK90 Chromosome 13 SCAF14566, whole genome shotgun sequence. (Fragment)
n=1 Tax=Tetraodon nigroviridis RepID=Q4SK90_TETNG
Length = 275
Score = 133 bits (334), Expect = 7e-30
Identities = 74/140 (52%), Positives = 101/140 (72%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV +SEVPTIAID ++I+ NSSVL+DEF+AHR+GLIPLTS+ + +++S
Sbjct: 26 TDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDEFVAHRVGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSA 356
RDC D C CSVE L V+C D+T VTS+DL S++ V+PV S D +
Sbjct: 86 RDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDY 142
Query: 357 VNK-GIIIVKLRRGQELRLR 413
V + I++VKLR+GQELRLR
Sbjct: 143 VEQDDILVVKLRKGQELRLR 162
[29][TOP]
>UniRef100_C3Z918 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z918_BRAFL
Length = 275
Score = 133 bits (334), Expect = 7e-30
Identities = 74/140 (52%), Positives = 100/140 (71%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+ANA+RR+ I+EVPT+AID V++E NSSVL+DEFIAHR+GLIPLTS+ + M++S
Sbjct: 26 TDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDEFIAHRVGLIPLTSDDIVDRMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C C++E L VKC D+T VT++DL SS+ VVPV + D ++
Sbjct: 86 RDCTCAE---FCADCAIELTLDVKCTDDQTRHVTTRDLISSNPRVVPVTSRRAEDETAGY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQEL+LR
Sbjct: 143 GEADDILIVKLRKGQELKLR 162
[30][TOP]
>UniRef100_UPI00019253CC PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI00019253CC
Length = 273
Score = 132 bits (333), Expect = 9e-30
Identities = 76/138 (55%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS-ERAMAMRFS 179
TD S+AN+LRR+ I+EVPTIAID V+IE N+SVL+DEFIAHR+GLIPLTS E+ M +S
Sbjct: 26 TDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDEFIAHRIGLIPLTSDEKVDKMCYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFS-PDTSSDSA 356
RDC + C+ CSV+F L VKC + T VTS+DL S D V+PV D +
Sbjct: 86 RDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRDLISEDPKVIPVTSRIKDDDTGYG 142
Query: 357 VNKGIIIVKLRRGQELRL 410
I+IVKLR+GQEL+L
Sbjct: 143 ETDEIVIVKLRKGQELKL 160
[31][TOP]
>UniRef100_UPI0001925380 PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI0001925380
Length = 289
Score = 132 bits (333), Expect = 9e-30
Identities = 76/138 (55%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS-ERAMAMRFS 179
TD S+AN+LRR+ I+EVPTIAID V+IE N+SVL+DEFIAHR+GLIPLTS E+ M +S
Sbjct: 26 TDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDEFIAHRIGLIPLTSDEKVDKMCYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFS-PDTSSDSA 356
RDC + C+ CSV+F L VKC + T VTS+DL S D V+PV D +
Sbjct: 86 RDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRDLISEDPKVIPVTSRIKDDDTGYG 142
Query: 357 VNKGIIIVKLRRGQELRL 410
I+IVKLR+GQEL+L
Sbjct: 143 ETDEIVIVKLRKGQELKL 160
[32][TOP]
>UniRef100_UPI0000DC0B4D polymerase II polypeptide C n=1 Tax=Rattus norvegicus
RepID=UPI0000DC0B4D
Length = 330
Score = 132 bits (332), Expect = 1e-29
Identities = 75/140 (53%), Positives = 98/140 (70%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[33][TOP]
>UniRef100_UPI00016D3816 polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Mus
musculus RepID=UPI00016D3816
Length = 302
Score = 132 bits (332), Expect = 1e-29
Identities = 75/140 (53%), Positives = 98/140 (70%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[34][TOP]
>UniRef100_Q9DB22 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q9DB22_MOUSE
Length = 275
Score = 132 bits (332), Expect = 1e-29
Identities = 75/140 (53%), Positives = 98/140 (70%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[35][TOP]
>UniRef100_Q99M46 Polymerase (RNA) II (DNA directed) polypeptide C n=2 Tax=Murinae
RepID=Q99M46_MOUSE
Length = 275
Score = 132 bits (332), Expect = 1e-29
Identities = 75/140 (53%), Positives = 98/140 (70%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[36][TOP]
>UniRef100_Q3UUX3 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q3UUX3_MOUSE
Length = 332
Score = 132 bits (332), Expect = 1e-29
Identities = 75/140 (53%), Positives = 98/140 (70%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[37][TOP]
>UniRef100_A7SI64 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SI64_NEMVE
Length = 274
Score = 132 bits (332), Expect = 1e-29
Identities = 76/140 (54%), Positives = 95/140 (67%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T S+AN LRR+ I+E PTIAID V+IE N+SVL+DEFIAHRLGL+PLTS+ + M FS
Sbjct: 26 TGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDEFIAHRLGLVPLTSDEVVDRMTFS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC D C+ CS+EF L VKC D T VT++DL S++ VPV D S +
Sbjct: 86 RDCTC---DEFCDDCSIEFTLDVKCTDDSTRHVTTQDLISTNPRCVPVTSRNREDDSREY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQEL+LR
Sbjct: 143 MEQDDILIVKLRKGQELKLR 162
[38][TOP]
>UniRef100_Q3T0Q3 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Bos taurus
RepID=RPB3_BOVIN
Length = 275
Score = 132 bits (332), Expect = 1e-29
Identities = 75/140 (53%), Positives = 98/140 (70%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[39][TOP]
>UniRef100_C1BL52 DNA-directed RNA polymerase II 33 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BL52_OSMMO
Length = 275
Score = 132 bits (331), Expect = 2e-29
Identities = 76/140 (54%), Positives = 100/140 (71%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV +SEV TIAID ++I+ NSSVL+DEFIAHR+GLIPLTS+ + M++S
Sbjct: 26 TDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDEFIAHRVGLIPLTSDDIVDKMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSA 356
RDC D C CSVE L V+C D+T VTS+DL S++ V+PV S D +
Sbjct: 86 RDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDY 142
Query: 357 VNK-GIIIVKLRRGQELRLR 413
V + II+VKLR+GQELRLR
Sbjct: 143 VEQDDIILVKLRKGQELRLR 162
[40][TOP]
>UniRef100_Q76L19 Homologue of DNA-directed RNA polymerase II subunit n=1
Tax=Antheraea pernyi RepID=Q76L19_ANTPE
Length = 275
Score = 132 bits (331), Expect = 2e-29
Identities = 72/140 (51%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN++RRV I+E PT+AID +++E NS+VL+DEF+AHR+GLIPL S+ + +R+S
Sbjct: 26 TELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVD--FSPDTSSDS 353
RDC D C CSVEF L VKC D+T VT+ DL SSD VVPV + +D
Sbjct: 86 RDCMCAD---FCSECSVEFTLDVKCTDDQTRHVTTADLKSSDPRVVPVTSRHRDEDQADY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+I+KLR+GQEL+LR
Sbjct: 143 GETDEILIIKLRKGQELKLR 162
[41][TOP]
>UniRef100_C1BXW0 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Esox lucius
RepID=C1BXW0_ESOLU
Length = 275
Score = 131 bits (329), Expect = 3e-29
Identities = 73/140 (52%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+AN++RRV +SEV TIAID ++I+ NSSV++DEFIAHR+GLIPLTS+ + M++S
Sbjct: 26 TDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDEFIAHRVGLIPLTSDDVVDKMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFS--PDTSSDS 353
RDC D C CSVE L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRDLLSNHPRVIPVTSKSRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I++VKLR+GQELRLR
Sbjct: 143 VEQDDILLVKLRKGQELRLR 162
[42][TOP]
>UniRef100_B5XBM8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5XBM8_SALSA
Length = 275
Score = 131 bits (329), Expect = 3e-29
Identities = 73/140 (52%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+AN++RRV +SEV TIAID ++I+ NSSV++DEFIAHR+GLIPLTS+ + M++S
Sbjct: 26 TDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDEFIAHRVGLIPLTSDDVVDKMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFS--PDTSSDS 353
RDC D C CSVE L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRDLLSNHPRVIPVTSKSRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I++VKLR+GQELRLR
Sbjct: 143 VEQDDILLVKLRKGQELRLR 162
[43][TOP]
>UniRef100_P97760 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Mus musculus
RepID=RPB3_MOUSE
Length = 275
Score = 131 bits (329), Expect = 3e-29
Identities = 75/140 (53%), Positives = 98/140 (70%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDEFIAHRLGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[44][TOP]
>UniRef100_UPI000186DA34 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186DA34
Length = 275
Score = 130 bits (326), Expect = 6e-29
Identities = 73/140 (52%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN++RRV I+E PT+AID V++E NS+VL DEFI+HR+GLIPLTS+ + ++++
Sbjct: 26 TELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADEFISHRVGLIPLTSDEVVDRIQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVD--FSPDTSSDS 353
RDC D C CSVEF L VKC D T VT+ DL SSD V+PV D +S+
Sbjct: 86 RDCTCLD---FCPECSVEFTLDVKCTDDHTRHVTTADLKSSDPRVLPVTSRHREDDTSEY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQEL+LR
Sbjct: 143 GEADEILIVKLRKGQELKLR 162
[45][TOP]
>UniRef100_UPI0000D9F160 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 1 n=1 Tax=Macaca mulatta RepID=UPI0000D9F160
Length = 257
Score = 130 bits (326), Expect = 6e-29
Identities = 74/140 (52%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPL S+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[46][TOP]
>UniRef100_B7Z6D1 cDNA FLJ57430, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z6D1_HUMAN
Length = 424
Score = 130 bits (326), Expect = 6e-29
Identities = 74/140 (52%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPL S+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[47][TOP]
>UniRef100_P19387 DNA-directed RNA polymerase II subunit RPB3 n=2 Tax=Homo sapiens
RepID=RPB3_HUMAN
Length = 275
Score = 130 bits (326), Expect = 6e-29
Identities = 74/140 (52%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPL S+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[48][TOP]
>UniRef100_B5X5T8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5X5T8_SALSA
Length = 275
Score = 129 bits (325), Expect = 8e-29
Identities = 72/140 (51%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+AN++RRV +SEV TIAID ++I+ NSSV++DEFIAHR+GLIPLTS+ + M++S
Sbjct: 26 TDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDEFIAHRVGLIPLTSDDVVDKMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFS--PDTSSDS 353
RDC D C CSVE L +C D+T VTS+DL S+ V+PV + +D
Sbjct: 86 RDCTC---DDFCPECSVELTLDARCTEDQTRHVTSRDLLSNHPRVIPVTSKSRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I++VKLR+GQELRLR
Sbjct: 143 VEQDDILLVKLRKGQELRLR 162
[49][TOP]
>UniRef100_Q1HQ43 DNA-directed RNA polymerase II polypeptide n=1 Tax=Bombyx mori
RepID=Q1HQ43_BOMMO
Length = 275
Score = 129 bits (325), Expect = 8e-29
Identities = 72/140 (51%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN++RRV I+E PT+AID V++E NS+VL+DEF+AHR+GLIPL S+ + +R+S
Sbjct: 26 TELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVD--FSPDTSSDS 353
RDC D C CSVEF L VKC ++T VT+ DL SSD VVPV + +D
Sbjct: 86 RDCMCVD---FCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDEDQADY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+I+KLR+GQEL+LR
Sbjct: 143 GEADEILIIKLRKGQELKLR 162
[50][TOP]
>UniRef100_Q16XU4 DNA-directed RNA polymerase II subunit n=1 Tax=Aedes aegypti
RepID=Q16XU4_AEDAE
Length = 275
Score = 129 bits (323), Expect = 1e-28
Identities = 72/141 (51%), Positives = 95/141 (67%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+ N+LRRV I+E PT+AID V++E N++VL DEF+AHR+GLIPL S+ + M++S
Sbjct: 26 TDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADEFLAHRVGLIPLISDEVVERMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC D C CSVEF L VKC + T VT+ DL SSD V+PV D+
Sbjct: 86 RDCTCLD---FCTECSVEFTLDVKCNDEHTRHVTTADLKSSDPRVLPVTSRHRDDEDNEY 142
Query: 360 NKG---IIIVKLRRGQELRLR 413
+G I+I+KLR+GQEL+LR
Sbjct: 143 GEGTDEILIIKLRKGQELKLR 163
[51][TOP]
>UniRef100_C4WTK3 ACYPI001769 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WTK3_ACYPI
Length = 273
Score = 129 bits (323), Expect = 1e-28
Identities = 72/143 (50%), Positives = 100/143 (69%), Gaps = 6/143 (4%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+AN+LRRV I+E PT+AID V+++ NS+VL+DEFIA R+GLIPLTS+ + +++S
Sbjct: 26 TDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDEFIASRIGLIPLTSDEIVDRLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC D C CSVEF+L VKC + T VT+ DL S++ VVPV + DS +
Sbjct: 86 RDCTCSD---FCHDCSVEFNLHVKCSEEMTRHVTTADLVSNNPRVVPV---TSRNQDSDI 139
Query: 360 NK-----GIIIVKLRRGQELRLR 413
N+ I+I+KLR+GQEL++R
Sbjct: 140 NEYGEKDDILIIKLRKGQELKIR 162
[52][TOP]
>UniRef100_B3RV95 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3RV95_TRIAD
Length = 274
Score = 129 bits (323), Expect = 1e-28
Identities = 70/140 (50%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+AN+LRR+ I+ VPT+AID V+ N+SVL+DEFIAHRLGLIPLT + + +++S
Sbjct: 26 TDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDEFIAHRLGLIPLTCDEVIDRLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVD--FSPDTSSDS 353
RDC+ + C CSVEF L V+C D+T VT++DL SSD VVPV + D +
Sbjct: 86 RDCNCVE---HCPECSVEFTLDVRCNDDQTRHVTTRDLISSDSRVVPVTTRYGEDDTVYG 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+I KLRRGQE++++
Sbjct: 143 DQEDDILIAKLRRGQEIKIK 162
[53][TOP]
>UniRef100_UPI0000D5785C PREDICTED: similar to DNA-directed RNA polymerase II subunit n=1
Tax=Tribolium castaneum RepID=UPI0000D5785C
Length = 274
Score = 128 bits (322), Expect = 2e-28
Identities = 70/140 (50%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+AN++RRV+I+E PT+AID V++E NS+VL+DEF+AHR+GLIPL S+ + +++
Sbjct: 26 TDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDEFLAHRIGLIPLISDDVVQRLQYP 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV--DFSPDTSSDS 353
RDC D C CSVEF L VKC D T VT+ DL SSD V+P D SS+
Sbjct: 86 RDCICTD---FCHECSVEFTLDVKCTDDHTRHVTTADLKSSDPRVIPATSKHRDDESSEY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+I+KLR+GQEL+++
Sbjct: 143 GDTDEILIIKLRKGQELKVK 162
[54][TOP]
>UniRef100_Q2GNN7 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2GNN7_CHAGB
Length = 338
Score = 128 bits (322), Expect = 2e-28
Identities = 70/135 (51%), Positives = 89/135 (65%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D + AN+LRRVM+ E+PTIAIDLVEIE NSSVL DEFIAHRLGLIPL ++ + F+RD
Sbjct: 36 DIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAHRLGLIPLNADGVEGLLFARD 95
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
CD DG CE CSV L KC DE + V ++DL + + V +P S +
Sbjct: 96 CDC---DGCCEHCSVRLTLHAKCTGDENMHVFARDLVPTGERINQVLGTPVVSDSEGL-- 150
Query: 366 GIIIVKLRRGQELRL 410
G +I+KLR GQE++L
Sbjct: 151 GALILKLRPGQEIKL 165
[55][TOP]
>UniRef100_UPI000051A16D PREDICTED: similar to RNA polymerase II 33kD subunit CG7885-PA,
isoform A n=1 Tax=Apis mellifera RepID=UPI000051A16D
Length = 276
Score = 128 bits (321), Expect = 2e-28
Identities = 69/140 (49%), Positives = 97/140 (69%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN++RRV I+E PT+AID +++E NS+VL+DEF+AHR+G+IPL S+ + ++++
Sbjct: 26 TELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDEFLAHRIGMIPLISDDVVDRIQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVD--FSPDTSSDS 353
RDC D C CSVEF L VKC D+T VT+ D SSD V+PV D +S+
Sbjct: 86 RDCQCMD---FCPECSVEFTLDVKCTEDQTRHVTTADFKSSDPRVLPVTSRHREDDASEY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQEL+LR
Sbjct: 143 GETDEILIVKLRKGQELKLR 162
[56][TOP]
>UniRef100_Q4R533 Brain cDNA, clone: QccE-21516, similar to human polymerase (RNA) II
(DNA directed) polypeptide C, 33kDa(POLR2C), transcript
variant gamma, n=1 Tax=Macaca fascicularis
RepID=Q4R533_MACFA
Length = 251
Score = 128 bits (321), Expect = 2e-28
Identities = 73/140 (52%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPL S+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDS 353
RDC + C CSVEF L V+C D+T VTS+DL + V+PV + +D
Sbjct: 86 RDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLIPNSPRVIPVTSRNRDNDPNDY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQELRLR
Sbjct: 143 VEQDDILIVKLRKGQELRLR 162
[57][TOP]
>UniRef100_Q7Q2H6 AGAP010321-PA n=1 Tax=Anopheles gambiae RepID=Q7Q2H6_ANOGA
Length = 273
Score = 128 bits (321), Expect = 2e-28
Identities = 71/141 (50%), Positives = 96/141 (68%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN+LRRV I+E PT+AID V++E N++VL DEF+AHR+GLIPL S+ + M++S
Sbjct: 26 TELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADEFLAHRVGLIPLISDEVVDRMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC D C CSVEF L VKC + T VT+ DL SSD V+PV D+
Sbjct: 86 RDCPCLD---FCNECSVEFTLDVKCNEEHTRHVTTADLKSSDPRVLPVTSRHRDDEDNEY 142
Query: 360 NKG---IIIVKLRRGQELRLR 413
+G I+I+KLR+GQEL+L+
Sbjct: 143 GEGTDEILIIKLRKGQELKLK 163
[58][TOP]
>UniRef100_UPI00006A469F PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 n=1 Tax=Ciona intestinalis
RepID=UPI00006A469F
Length = 277
Score = 127 bits (320), Expect = 3e-28
Identities = 70/140 (50%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S AN++RRV I+EVPT+AID ++IE NSSVLNDEF++HR+GLIPLTS+ + +++S
Sbjct: 26 TDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDEFLSHRIGLIPLTSDDVVDKIQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSP--DTSSDS 353
RDC D C+ CSVEF+L VKC + T VT++DL S + VVP+ D+S
Sbjct: 86 RDCMC---DDFCQDCSVEFYLDVKCTGEGTRQVTTRDLISMNPKVVPITSRSRGDSSKSF 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+I KLR+GQ L+ +
Sbjct: 143 GEQDDILIAKLRKGQSLKFK 162
[59][TOP]
>UniRef100_Q9P5U3 Probable DNA-directed RNA polymerase II chain RPB3 n=1
Tax=Neurospora crassa RepID=Q9P5U3_NEUCR
Length = 337
Score = 127 bits (320), Expect = 3e-28
Identities = 71/137 (51%), Positives = 91/137 (66%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
T+ S AN+LRRVM++E+PTIAIDLVEIE NSSVL DEFIAHRLGLIPL +E + +SR
Sbjct: 35 TELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAHRLGLIPLNAEGIEQLLYSR 94
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCD D CE CSV +L KC D+ + V ++DL V V SP +
Sbjct: 95 DCDC---DEYCEHCSVTLNLHAKCTGDDIMQVCARDLVPVGDRVNQVLGSPIINDPE--G 149
Query: 363 KGIIIVKLRRGQELRLR 413
+G +I+KLR GQE++L+
Sbjct: 150 QGPLILKLRHGQEIKLQ 166
[60][TOP]
>UniRef100_O97183 RNA polymerase II 33kD subunit, isoform A n=1 Tax=Drosophila
melanogaster RepID=O97183_DROME
Length = 275
Score = 126 bits (317), Expect = 7e-28
Identities = 70/141 (49%), Positives = 97/141 (68%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN+LRRV I+E PT+AID V++E NS+VL+DEF+AHR+GLIPL S+ + ++++
Sbjct: 26 TELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC D C CSVEF L VKC ++T VT+ DL SS+ V+PV D+
Sbjct: 86 RDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEY 142
Query: 360 ---NKGIIIVKLRRGQELRLR 413
N I+I+KLR+GQEL+LR
Sbjct: 143 GESNDEILIIKLRKGQELKLR 163
[61][TOP]
>UniRef100_B4Q573 GD23930 n=1 Tax=Drosophila simulans RepID=B4Q573_DROSI
Length = 275
Score = 126 bits (317), Expect = 7e-28
Identities = 70/141 (49%), Positives = 97/141 (68%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN+LRRV I+E PT+AID V++E NS+VL+DEF+AHR+GLIPL S+ + ++++
Sbjct: 26 TELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC D C CSVEF L VKC ++T VT+ DL SS+ V+PV D+
Sbjct: 86 RDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEY 142
Query: 360 ---NKGIIIVKLRRGQELRLR 413
N I+I+KLR+GQEL+LR
Sbjct: 143 GESNDEILIIKLRKGQELKLR 163
[62][TOP]
>UniRef100_B4P3R0 GE18688 n=1 Tax=Drosophila yakuba RepID=B4P3R0_DROYA
Length = 275
Score = 126 bits (317), Expect = 7e-28
Identities = 70/141 (49%), Positives = 97/141 (68%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN+LRRV I+E PT+AID V++E NS+VL+DEF+AHR+GLIPL S+ + ++++
Sbjct: 26 TELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC D C CSVEF L VKC ++T VT+ DL SS+ V+PV D+
Sbjct: 86 RDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEY 142
Query: 360 ---NKGIIIVKLRRGQELRLR 413
N I+I+KLR+GQEL+LR
Sbjct: 143 GESNDEILIIKLRKGQELKLR 163
[63][TOP]
>UniRef100_B4HXA7 GM15286 n=1 Tax=Drosophila sechellia RepID=B4HXA7_DROSE
Length = 275
Score = 126 bits (317), Expect = 7e-28
Identities = 70/141 (49%), Positives = 97/141 (68%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN+LRRV I+E PT+AID V++E NS+VL+DEF+AHR+GLIPL S+ + ++++
Sbjct: 26 TELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC D C CSVEF L VKC ++T VT+ DL SS+ V+PV D+
Sbjct: 86 RDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTADLKSSNAKVLPVTSRHQGEEDNEY 142
Query: 360 ---NKGIIIVKLRRGQELRLR 413
N I+I+KLR+GQEL+LR
Sbjct: 143 GESNDEILIIKLRKGQELKLR 163
[64][TOP]
>UniRef100_UPI00015B59AE PREDICTED: similar to DNA-directed RNA polymerase II polypeptide
n=1 Tax=Nasonia vitripennis RepID=UPI00015B59AE
Length = 276
Score = 126 bits (316), Expect = 9e-28
Identities = 69/140 (49%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN++RRV I+E PT+AID V+IE NS+VL+DEF+AHR+G+IPL S+ + ++++
Sbjct: 26 TELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDEFLAHRIGMIPLISDEVVDRIQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV--DFSPDTSSDS 353
RDC D C C VEF L VKC + T VT+ DL SS+ VVPV D +++
Sbjct: 86 RDCQCMD---FCPECCVEFTLDVKCSDETTRHVTTADLKSSEQRVVPVTSKHRDDDANEY 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
I+IVKLR+GQEL+LR
Sbjct: 143 GETDEILIVKLRKGQELKLR 162
[65][TOP]
>UniRef100_B4MVQ9 GK15011 n=1 Tax=Drosophila willistoni RepID=B4MVQ9_DROWI
Length = 275
Score = 126 bits (316), Expect = 9e-28
Identities = 70/141 (49%), Positives = 97/141 (68%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN+LRRV I+E PT+AID V++E NS+VL+DEF+AHR+GLIPL S+ + ++++
Sbjct: 26 TELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC D C CSVEF L VKC ++T VT+ DL SS+ V+PV D+
Sbjct: 86 RDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEY 142
Query: 360 ---NKGIIIVKLRRGQELRLR 413
N I+I+KLR+GQEL+LR
Sbjct: 143 GESNDEILIIKLRKGQELKLR 163
[66][TOP]
>UniRef100_B4JCX9 GH11119 n=3 Tax=Drosophila RepID=B4JCX9_DROGR
Length = 275
Score = 125 bits (314), Expect = 1e-27
Identities = 69/141 (48%), Positives = 97/141 (68%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN+LRRV I+E PT+AID V++E NS+VL+DEF+AHR+GLIPL S+ + ++++
Sbjct: 26 TELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC D C CSVEF L VKC ++T VT+ DL SS+ V+PV D+
Sbjct: 86 RDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEY 142
Query: 360 NKG---IIIVKLRRGQELRLR 413
+ I+I+KLR+GQEL+LR
Sbjct: 143 GESTDEILIIKLRKGQELKLR 163
[67][TOP]
>UniRef100_Q29K78 GA20659 n=2 Tax=pseudoobscura subgroup RepID=Q29K78_DROPS
Length = 275
Score = 124 bits (312), Expect = 2e-27
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN+LRRV I+E PT+AID V++E NS+VL+DEF+AHR+GLIPL S+ + ++++
Sbjct: 26 TELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
RDC D C CSVEF L VKC ++T VT+ DL +S+ V+PV D+
Sbjct: 86 RDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTADLKTSNPKVLPVTSRNQGEEDNEY 142
Query: 360 NKG---IIIVKLRRGQELRLR 413
+ I+I+KLR+GQEL+LR
Sbjct: 143 GESSDEILIIKLRKGQELKLR 163
[68][TOP]
>UniRef100_A8PAX3 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Brugia malayi RepID=A8PAX3_BRUMA
Length = 275
Score = 124 bits (311), Expect = 3e-27
Identities = 68/140 (48%), Positives = 98/140 (70%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+AN+LRR+ ++EVPT+AID V+IE NSSVL+DEFIAHRLGLIPLTS+ + M+FS
Sbjct: 26 TDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDEFIAHRLGLIPLTSDSVVDQMQFS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV--DFSPDTSSDS 353
RDC + C+FC+VE LRV+C + VT+ DL +S+ V P + +++
Sbjct: 86 RDCQCTE---FCQFCAVEMRLRVRCDDEGIRAVTTADLETSNPDVAPACGVHIRNRNAEE 142
Query: 354 AVNKGIIIVKLRRGQELRLR 413
+ I+IVKLR+GQ++ ++
Sbjct: 143 NASDDILIVKLRKGQDIDIK 162
[69][TOP]
>UniRef100_C4QNG7 DNA-directed rna polymerase II subunit, putative n=1
Tax=Schistosoma mansoni RepID=C4QNG7_SCHMA
Length = 266
Score = 120 bits (301), Expect = 5e-26
Identities = 69/138 (50%), Positives = 89/138 (64%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD S+ANA+RRV I+EVPT+AID V+IE N+++LNDEFIA R+GLIPLT + + M +
Sbjct: 26 TDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDEFIAQRVGLIPLTCDNVVDKMTYF 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV 359
R+C + CE CSVE L V C TD VT DL SS+ V PV S
Sbjct: 86 RECPCRE---FCEQCSVELTLDVCCTTDAPRHVTGADLISSNRDVQPVPSRDADESSYVG 142
Query: 360 NKGIIIVKLRRGQELRLR 413
+ I+IVK+R+GQ L+LR
Sbjct: 143 QESILIVKMRKGQRLKLR 160
[70][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 119 bits (299), Expect = 8e-26
Identities = 70/141 (49%), Positives = 92/141 (65%), Gaps = 5/141 (3%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAM----- 170
D S+ANALRRVMI++VPT+AIDLVE+ NSSVL DEF+AHRLGLIPL+S++ +
Sbjct: 29 DVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHRLGLIPLSSKKVSELFKPYE 88
Query: 171 RFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSD 350
D A D V L V+C+T++ +DVTS+D+ S D V P+ F T SD
Sbjct: 89 YMGEDDSATD---------VHLELNVRCLTEQAMDVTSEDMVSYDERVKPITFQ-GTVSD 138
Query: 351 SAVNKGIIIVKLRRGQELRLR 413
+A GI+IVKLR Q+L L+
Sbjct: 139 AAKPGGILIVKLRNKQQLLLK 159
[71][TOP]
>UniRef100_A7EJ53 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7EJ53_SCLS1
Length = 335
Score = 119 bits (299), Expect = 8e-26
Identities = 69/141 (48%), Positives = 88/141 (62%), Gaps = 5/141 (3%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S AN+LRR ++SEVPTIAID V+IE N+SVL DEFIAHRLGLIPL S+ + ++RD
Sbjct: 35 DLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAHRLGLIPLNSKNCDDVIYTRD 94
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY-----SSDHTVVPVDFSPDTSSD 350
CD DG CE CSV L +C DE + V ++DL ++ PV PD
Sbjct: 95 CDC---DGNCELCSVTLTLHARCTGDEIMKVYARDLVVDPQRANKWVGNPVITDPD---- 147
Query: 351 SAVNKGIIIVKLRRGQELRLR 413
G +I KLR+GQELR++
Sbjct: 148 ---GLGPVIAKLRKGQELRMK 165
[72][TOP]
>UniRef100_A5E4Q9 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5E4Q9_LODEL
Length = 336
Score = 119 bits (299), Expect = 8e-26
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 2/137 (1%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+AN+LRR M++EVPT+AIDLVEI+VN+SVL DEF+AHRLGLIPL S+ + +SRD
Sbjct: 27 DLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAHRLGLIPLDSQGIENLLYSRD 86
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVV--PVDFSPDTSSDSAV 359
C AC D C CSV L KC +D T++V + DL + ++ P+ P
Sbjct: 87 C-AC--DNYCSKCSVTLELTAKCDSDSTMNVCASDLLKLNTELLGKPIIRDPQ------- 136
Query: 360 NKGIIIVKLRRGQELRL 410
N+G +I KLRR QE+RL
Sbjct: 137 NRGPLICKLRRHQEIRL 153
[73][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 118 bits (296), Expect = 2e-25
Identities = 78/157 (49%), Positives = 95/157 (60%), Gaps = 20/157 (12%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD SIANALRRV+I+EVPTIAIDLVE+ NSS L DEFIAHRLGLIPL S +A M F
Sbjct: 32 TDTSIANALRRVIIAEVPTIAIDLVEVIENSSCLCDEFIAHRLGLIPLVSHKAADMEFPY 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL-----YSSDHTVVPVDFSP---- 335
D GD + V LRVKC++D+T DVTS DL Y+ TV PV + P
Sbjct: 92 D---YAGDDE-TVTDVPIELRVKCVSDQTEDVTSNDLLINGDYTQYDTVKPVHYRPSGRA 147
Query: 336 --DTSSDSAVNKG---------IIIVKLRRGQELRLR 413
D ++ A G I+I+KLR+ QE+ +R
Sbjct: 148 FGDATASGAPADGSQADGDKHPILILKLRKNQEINMR 184
[74][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 118 bits (295), Expect = 2e-25
Identities = 69/140 (49%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAM----R 173
D S+ANALRR+MI++VPT++IDLVE+ NSSVL DEF+AHRLGLIPL S +A +
Sbjct: 29 DVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRLGLIPLDSTKASELVKPYE 88
Query: 174 FSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDS 353
++ D D V L V+C +D+T DVTS DL S D V PV F T S
Sbjct: 89 YTGDDDTA--------TDVHLELNVRCQSDQTRDVTSDDLISHDERVKPVSFG-GTGGGS 139
Query: 354 AVNKGIIIVKLRRGQELRLR 413
A + GI+I KLR+ Q+L L+
Sbjct: 140 AKSGGILIAKLRKNQQLSLK 159
[75][TOP]
>UniRef100_B8PBS2 Predicted protein (Fragment) n=1 Tax=Postia placenta Mad-698-R
RepID=B8PBS2_POSPM
Length = 265
Score = 118 bits (295), Expect = 2e-25
Identities = 65/138 (47%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D ++AN+LRRVM++++PT+AID+VEIE N++VL DEFIAHRLG+IPL S MR++R
Sbjct: 24 DLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAHRLGMIPLVSSNCDEGMRYTR 83
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVV-PVDFSPDTSSDSAV 359
DC C+FC+VE L V C +DVTS L SD P +F
Sbjct: 84 DCTCL---SWCQFCAVELTLHVACHDGVAMDVTSMHLDVSDELAKRPENFGHPVGKFDPS 140
Query: 360 NKGIIIVKLRRGQELRLR 413
++I K+R+GQELRLR
Sbjct: 141 VSPVLIAKIRKGQELRLR 158
[76][TOP]
>UniRef100_A6S2E5 RNA polymerase II subunit 3 n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6S2E5_BOTFB
Length = 336
Score = 118 bits (295), Expect = 2e-25
Identities = 68/141 (48%), Positives = 88/141 (62%), Gaps = 5/141 (3%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S AN+LRR ++SEVPTIAID V+IE N+SVL DEFIAHRLGLIPL S+ + ++RD
Sbjct: 35 DLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAHRLGLIPLNSKNCDDVIYTRD 94
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY-----SSDHTVVPVDFSPDTSSD 350
CD +G CE CSV L +C DE + V ++DL ++ PV PD
Sbjct: 95 CDC---EGNCELCSVTLTLHARCTGDEIMKVYARDLVVDPQRANKWVGNPVITDPD---- 147
Query: 351 SAVNKGIIIVKLRRGQELRLR 413
G +I KLR+GQELR++
Sbjct: 148 ---GLGPVIAKLRKGQELRMK 165
[77][TOP]
>UniRef100_C7YWI1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YWI1_NECH7
Length = 335
Score = 116 bits (291), Expect = 7e-25
Identities = 68/136 (50%), Positives = 86/136 (63%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
T+ + ANALRRV+ +EVPTIAIDLVEIE+NSSVL DEFIAHRLGLIPL S+ + SR
Sbjct: 34 TNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIAHRLGLIPLDSKGVGELNNSR 93
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCD + CE CSV +L KC +DE + V ++DL V T +
Sbjct: 94 DCDC---EQYCEQCSVTLNLHAKCTSDEIMKVYARDLVVDGRHANSVGSPVITDPE---G 147
Query: 363 KGIIIVKLRRGQELRL 410
G +I KLR+ QEL++
Sbjct: 148 YGCLIAKLRKDQELKI 163
[78][TOP]
>UniRef100_UPI000194E98D PREDICTED: hypothetical protein, partial n=1 Tax=Taeniopygia
guttata RepID=UPI000194E98D
Length = 129
Score = 116 bits (290), Expect = 9e-25
Identities = 62/107 (57%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + M++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVP 320
RDC D C CSVEF L V+C D+T VTS+DL S++ V+P
Sbjct: 86 RDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNNPRVIP 129
[79][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 116 bits (290), Expect = 9e-25
Identities = 73/157 (46%), Positives = 92/157 (58%), Gaps = 20/157 (12%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+ANALRRV+I+EVPT+AIDLV++ N+S L DEFIAHRLGLIPL SE+A+ M F
Sbjct: 31 TDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEFIAHRLGLIPLLSEKAVEMEFPY 90
Query: 183 DCDACDGDGQCEFCSVEFHLRVK-CMTDETLDVTSKDLYSSDHTVVPVDFSPDTS----- 344
D GD + V F L C + ET+DVTS DL D V PV++ P S
Sbjct: 91 D---YAGDDE-SVTDVHFELNTGICASAETVDVTSNDLVCYDPRVAPVNYHPGESIKGKG 146
Query: 345 --------------SDSAVNKGIIIVKLRRGQELRLR 413
D G++IVKLRRGQ++ +R
Sbjct: 147 GAMEFEAQAAARGPDDGPDIPGVVIVKLRRGQQINMR 183
[80][TOP]
>UniRef100_C4XY52 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY52_CLAL4
Length = 307
Score = 116 bits (290), Expect = 9e-25
Identities = 68/138 (49%), Positives = 88/138 (63%), Gaps = 3/138 (2%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+AN+LRR M+SEVPT+AIDLVEI+VN+SVL DE ++HRLGLIPL SE + +SRD
Sbjct: 30 DLSVANSLRRTMLSEVPTLAIDLVEIDVNTSVLADELLSHRLGLIPLNSEGIENLSYSRD 89
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL---YSSDHTVVPVDFSPDTSSDSA 356
C D C CSV+ L KC +D T++V S DL ++ PV P
Sbjct: 90 CTC---DQYCPNCSVKLELTAKCDSDSTMNVYSSDLAKFHNGSKLGDPVIRDP------- 139
Query: 357 VNKGIIIVKLRRGQELRL 410
++G +I KLR+ QELRL
Sbjct: 140 AHRGPLICKLRKHQELRL 157
[81][TOP]
>UniRef100_UPI000023DAEE hypothetical protein FG01447.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023DAEE
Length = 337
Score = 115 bits (289), Expect = 1e-24
Identities = 68/140 (48%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
T+ S ANA+RRV+ +EVPTIAIDLVEIE NSSVL DEFIAHRLGLIPL S+ + +SR
Sbjct: 34 TNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAHRLGLIPLDSKGVAELNYSR 93
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY----SSDHTVVPVDFSPDTSSD 350
DCD + CE CSV L KC +DE + V ++DL + P+ P+
Sbjct: 94 DCDC---EQYCEQCSVTLTLHAKCTSDEIMKVYARDLVVDGRHGNSVGSPMIMDPE---- 146
Query: 351 SAVNKGIIIVKLRRGQELRL 410
G +I KLR+ QEL++
Sbjct: 147 ---GYGCLIAKLRKHQELKI 163
[82][TOP]
>UniRef100_Q93338 Protein C36B1.3, partially confirmed by transcript evidence n=1
Tax=Caenorhabditis elegans RepID=Q93338_CAEEL
Length = 282
Score = 115 bits (289), Expect = 1e-24
Identities = 68/146 (46%), Positives = 97/146 (66%), Gaps = 9/146 (6%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFS 179
TD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DEFIAHR+GLIP S+ M+++
Sbjct: 26 TDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDEFIAHRMGLIPFISDYHVEKMQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL---YSSDHTVVP-----VDFSP 335
RDC+ + C+ CS+ F L++KC + TL VT++ L ++ D TV P +
Sbjct: 86 RDCECAE---FCDECSIPFILQMKCKDEATLAVTTEHLMPMHNLDTTVRPACGKALRERG 142
Query: 336 DTSSDSAVNKGIIIVKLRRGQELRLR 413
T + + I+IVKLR+GQEL L+
Sbjct: 143 STRDEFHNREEILIVKLRKGQELNLK 168
[83][TOP]
>UniRef100_Q6BUW0 DEHA2C07546p n=1 Tax=Debaryomyces hansenii RepID=Q6BUW0_DEBHA
Length = 311
Score = 115 bits (289), Expect = 1e-24
Identities = 68/135 (50%), Positives = 87/135 (64%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D ++AN++RR M++EVPT+AIDLVEIEVN+SVL DEFI+HRLGLIPL SE + +SRD
Sbjct: 31 DLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISHRLGLIPLNSEGIDNLSYSRD 90
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C CSV+ L KC TD T+ V S DL + H + D + K
Sbjct: 91 CTC---DQYCANCSVKLELTAKCDTDSTMSVYSSDL-AKFHNGSKLG---DPVARDNHRK 143
Query: 366 GIIIVKLRRGQELRL 410
G +I KLR+ QELR+
Sbjct: 144 GPLICKLRKHQELRI 158
[84][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G229_PHATR
Length = 320
Score = 115 bits (288), Expect = 2e-24
Identities = 70/149 (46%), Positives = 92/149 (61%), Gaps = 12/149 (8%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
+D S+AN LRR+MI+EVPT+AIDLVE NS+VLNDE+IAHR+GLIP+ + A +++ S
Sbjct: 26 SDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDEYIAHRMGLIPVRYQPAESLKGSD 85
Query: 183 DCDA------CDGDGQCEFCSVEFHLRV--KCMTDE----TLDVTSKDLYSSDHTVVPVD 326
DA C C CSVEF L + K +E L VTSKDL S++ V P
Sbjct: 86 CSDAFLPHRECVCYEHCMRCSVEFELDITYKVTGEEDVLAPLTVTSKDLVSNNELVQPAH 145
Query: 327 FSPDTSSDSAVNKGIIIVKLRRGQELRLR 413
F D A ++G+ IVKL GQ L+L+
Sbjct: 146 FLSQDEQDEAQDEGVAIVKLGPGQRLKLK 174
[85][TOP]
>UniRef100_B2B158 Predicted CDS Pa_3_9390 n=1 Tax=Podospora anserina
RepID=B2B158_PODAN
Length = 334
Score = 115 bits (288), Expect = 2e-24
Identities = 70/140 (50%), Positives = 89/140 (63%), Gaps = 5/140 (3%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S AN+LRRVM++E+PTIAIDLVEIE NSSVL DEFIAHRLGLIPL +E + +SRD
Sbjct: 36 DISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAHRLGLIPLNAEGVEHLLYSRD 95
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV-- 359
CD + CE CSV+ L KC E + V+++DL VPV + S + V
Sbjct: 96 CDC---EEYCENCSVKLTLHAKCTGYENMSVSARDL-------VPVGERINQSLGTPVIN 145
Query: 360 ---NKGIIIVKLRRGQELRL 410
G +I+KLR QE++L
Sbjct: 146 DKDGTGPLILKLRPEQEIKL 165
[86][TOP]
>UniRef100_C5MDV1 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MDV1_CANTT
Length = 327
Score = 115 bits (287), Expect = 2e-24
Identities = 64/135 (47%), Positives = 84/135 (62%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+AN++RR M++EVPT++IDLVEIE N+SVL DEF++HRLGLIPL SE + +SRD
Sbjct: 29 DLSVANSIRRTMLAEVPTLSIDLVEIEKNTSVLADEFLSHRLGLIPLVSEGIKDLTYSRD 88
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C CSV L C + T++V + DL + HT + D N+
Sbjct: 89 CTC---DNYCTKCSVTLQLLASCTAETTMNVYASDLLKTTHTGSKLG---DPVFRDPRNR 142
Query: 366 GIIIVKLRRGQELRL 410
G II KLR+ QEL L
Sbjct: 143 GPIICKLRKDQELAL 157
[87][TOP]
>UniRef100_Q6C2S4 YALI0F05566p n=1 Tax=Yarrowia lipolytica RepID=Q6C2S4_YARLI
Length = 314
Score = 114 bits (286), Expect = 3e-24
Identities = 65/134 (48%), Positives = 88/134 (65%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 191
++AN+LRRVM++E+PT+AIDLVEI N+SVL DEFI+HRLGLIPL S+ + +SRDC
Sbjct: 21 TLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVNDLEYSRDC- 79
Query: 192 ACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGI 371
C D C+ CSV L C D+T+D+ S+DL P + +D A KGI
Sbjct: 80 VC--DEYCDKCSVVLMLDATCTGDDTMDIYSRDLMVHTTPERP-ELGKPIYTDPA-KKGI 135
Query: 372 IIVKLRRGQELRLR 413
+I KLR+ Q LR++
Sbjct: 136 LICKLRKNQSLRIK 149
[88][TOP]
>UniRef100_B6K2N9 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6K2N9_SCHJY
Length = 308
Score = 114 bits (284), Expect = 4e-24
Identities = 63/142 (44%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER-----AMA 167
TD S+AN+LRRV++ E+PT+AIDLVEI VN+SV+ DEF+AHRLG+IPL S +
Sbjct: 24 TDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAHRLGMIPLNSNNIDEPPPVG 83
Query: 168 MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSS 347
+ ++R+CD D C CSVE L KC D T++V ++DL ++ + D S
Sbjct: 84 LEYTRNCDC---DQYCNKCSVELSLNAKCTGDGTMEVYARDLVVDSNSTLGQPVLADARS 140
Query: 348 DSAVNKGIIIVKLRRGQELRLR 413
G +I+KLR+ QE+ LR
Sbjct: 141 -----HGPLILKLRKEQEVSLR 157
[89][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BWN8_THAPS
Length = 297
Score = 113 bits (283), Expect = 6e-24
Identities = 70/147 (47%), Positives = 89/147 (60%), Gaps = 10/147 (6%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+AN LRR+MI+EVPT+AIDLVE NSSVLNDE+IAHRLGL+P+ R MA +
Sbjct: 23 TDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYIAHRLGLVPI---RFMAEGSLK 79
Query: 183 DCDACDGDGQCEFCSVEFHL----------RVKCMTDETLDVTSKDLYSSDHTVVPVDFS 332
+C D +C C VEF L R D L VTS+DL S++ V P F
Sbjct: 80 ECVCYD---RCPRCCVEFELDVNFDKVNQTRPDTERDLALTVTSRDLISNNMLVSPAHFL 136
Query: 333 PDTSSDSAVNKGIIIVKLRRGQELRLR 413
+ D + ++GI IVKL GQ L+L+
Sbjct: 137 NEEEQDESHDEGISIVKLGPGQHLKLK 163
[90][TOP]
>UniRef100_A3GF98 45 kDa subunit of RNA polymerase II n=1 Tax=Pichia stipitis
RepID=A3GF98_PICST
Length = 315
Score = 113 bits (283), Expect = 6e-24
Identities = 65/135 (48%), Positives = 87/135 (64%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D ++AN++RRVM++EVPT+AIDLVEI+VN+SVL DEF++HRLGL+PL SE + +SRD
Sbjct: 29 DMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSHRLGLVPLVSEGIENLTYSRD 88
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C CSV L KC TD T++V + DL + H + D +
Sbjct: 89 CTC---DNYCPKCSVRLELTAKCDTDSTMNVYATDL-AKFHNGSRLG---DPVVRDVQKR 141
Query: 366 GIIIVKLRRGQELRL 410
G +I KLR+ QELRL
Sbjct: 142 GPLICKLRKHQELRL 156
[91][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
Length = 275
Score = 112 bits (281), Expect = 1e-23
Identities = 69/138 (50%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S ANALRR M++EVPTIAIDLVE+E N++VLNDEF+AHRLGLIPL S A+ +
Sbjct: 32 TDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEFLAHRLGLIPLVSRNAVYWK--- 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL--YSSDHTVVPVDFSPDTSSDSA 356
+ G + F L V C + +DVTS DL D VVPV++ SA
Sbjct: 89 --RPFEWSGDNDIIETAFSLDVMCEQEGVMDVTSNDLVPLEPDAGVVPVNY------HSA 140
Query: 357 VNKGIIIVKLRRGQELRL 410
K I+I KLRRGQ L+L
Sbjct: 141 TEKPIVICKLRRGQHLKL 158
[92][TOP]
>UniRef100_UPI0000123F31 Hypothetical protein CBG12350 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI0000123F31
Length = 399
Score = 111 bits (278), Expect = 2e-23
Identities = 66/145 (45%), Positives = 93/145 (64%), Gaps = 8/145 (5%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFS 179
TD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DEFIAHR+GLIP S+ M+++
Sbjct: 26 TDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDEFIAHRMGLIPFLSDYHVEKMQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL--YSSDHTVVP-----VDFSPD 338
R+C+ + C+ CS+ F L+ KC + TL VT+ DL + TV P +
Sbjct: 86 RECECAE---FCDECSIPFILQTKCTDEATLAVTTADLRPLGVETTVRPACGEALRERGA 142
Query: 339 TSSDSAVNKGIIIVKLRRGQELRLR 413
+ + I+IVKLR+GQEL L+
Sbjct: 143 VRDEFHAREEILIVKLRKGQELNLK 167
[93][TOP]
>UniRef100_B7Z377 cDNA FLJ57937, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z377_HUMAN
Length = 155
Score = 111 bits (278), Expect = 2e-23
Identities = 60/108 (55%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD ++AN++RRV I+EVP IAID V+I+ NSSVL+DEFIAHRLGLIPL S+ + +++S
Sbjct: 26 TDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV 323
RDC + C CSVEF L V+C D+T VTS+DL S+ V+PV
Sbjct: 86 RDCTF---EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPV 130
[94][TOP]
>UniRef100_Q0CYF6 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Aspergillus terreus NIH2624 RepID=Q0CYF6_ASPTN
Length = 331
Score = 111 bits (278), Expect = 2e-23
Identities = 64/141 (45%), Positives = 88/141 (62%), Gaps = 6/141 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+ + ++R
Sbjct: 33 DLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDLEYTR 92
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL-----YSSDHTVVPVDFSPDTSS 347
DC+ D C CSV L +C D+ + V ++DL ++D PV P+
Sbjct: 93 DCECED---HCARCSVTLQLHARCTGDDIMRVYARDLAVAGERANDWVGTPVITDPE--- 146
Query: 348 DSAVNKGIIIVKLRRGQELRL 410
KG +I KLRRGQEL++
Sbjct: 147 ----GKGPLICKLRRGQELKM 163
[95][TOP]
>UniRef100_B0XTA3 RNA polymerase II subunit 3 n=2 Tax=Aspergillus fumigatus
RepID=B0XTA3_ASPFC
Length = 392
Score = 111 bits (278), Expect = 2e-23
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+ + ++R
Sbjct: 88 DLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTR 147
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCD D C CSV L +C DE + V ++DL S ++ D
Sbjct: 148 DCDCED---HCARCSVTLTLHARCTGDEIMPVYARDLVVSGERA--NEWVGDPVITDPEG 202
Query: 363 KGIIIVKLRRGQELRL 410
KG +I KLRRGQEL++
Sbjct: 203 KGPLICKLRRGQELKM 218
[96][TOP]
>UniRef100_A1C6Y7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus clavatus
RepID=A1C6Y7_ASPCL
Length = 333
Score = 111 bits (278), Expect = 2e-23
Identities = 65/141 (46%), Positives = 90/141 (63%), Gaps = 6/141 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+ + ++R
Sbjct: 32 DLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY-----SSDHTVVPVDFSPDTSS 347
DCD D +C CSV L +C DE + V ++DL +++ PV P+
Sbjct: 92 DCDCED---RCARCSVTLTLHARCTGDEIMPVYARDLVVTGERANEWVGTPVLTDPE--- 145
Query: 348 DSAVNKGIIIVKLRRGQELRL 410
KG +I KLRRGQEL++
Sbjct: 146 ----GKGSLICKLRRGQELKM 162
[97][TOP]
>UniRef100_Q5A462 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
albicans RepID=Q5A462_CANAL
Length = 318
Score = 110 bits (276), Expect = 4e-23
Identities = 62/135 (45%), Positives = 83/135 (61%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D ++AN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++HRLGLIPL SE + +SRD
Sbjct: 29 DLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSHRLGLIPLVSEGIDNLTYSRD 88
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C CSV L C T+ T++V + DL H + D +
Sbjct: 89 CTC---DNYCSKCSVTLQLIANCATESTMNVYASDLQKMSHNGSKLG---DPVIRDPQAR 142
Query: 366 GIIIVKLRRGQELRL 410
G +I KLR+ QEL L
Sbjct: 143 GPLICKLRKHQELSL 157
[98][TOP]
>UniRef100_B9WGL5 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Candida
dubliniensis CD36 RepID=B9WGL5_CANDC
Length = 313
Score = 110 bits (276), Expect = 4e-23
Identities = 62/135 (45%), Positives = 83/135 (61%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D ++AN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++HRLGLIPL SE + +SRD
Sbjct: 29 DLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSHRLGLIPLVSEGIDNLTYSRD 88
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C CSV L C T+ T++V + DL H + D +
Sbjct: 89 CTC---DNYCSKCSVTLQLVANCATESTMNVYASDLQKMSHNGSKLG---DPVIRDPQAR 142
Query: 366 GIIIVKLRRGQELRL 410
G +I KLR+ QEL L
Sbjct: 143 GPLICKLRKHQELSL 157
[99][TOP]
>UniRef100_UPI000155CFD6 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C n=1 Tax=Ornithorhynchus anatinus
RepID=UPI000155CFD6
Length = 352
Score = 110 bits (275), Expect = 5e-23
Identities = 67/130 (51%), Positives = 87/130 (66%), Gaps = 3/130 (2%)
Frame = +3
Query: 33 RVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCDACDGDG 209
R I P ++ID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++SRDC +
Sbjct: 113 RSPIQAPPILSIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTC---EE 169
Query: 210 QCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDSAVNK-GIIIVK 383
C CSVEF L V+C D+T VTS+DL S+ V+PV S D + V + I+IVK
Sbjct: 170 FCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRSRDNDPNDYVEQDDILIVK 229
Query: 384 LRRGQELRLR 413
LR+GQELRLR
Sbjct: 230 LRKGQELRLR 239
[100][TOP]
>UniRef100_Q4P8L3 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P8L3_USTMA
Length = 329
Score = 110 bits (274), Expect = 6e-23
Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 16/152 (10%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS-ERAMAMRFSR 182
D S AN+LRR+MI+++PT+AID+VEI N++VL DE +AHRLG++PL S + A A+ R
Sbjct: 32 DLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAHRLGMVPLLSMDCAKALVDHR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DC DG C+ CSVE LR +C T L+VTS+DL SD + D ++ A
Sbjct: 92 DCACEDG---CDRCSVELTLRARCTTRGNLEVTSRDLIRSDTIENATIYDDDAMAEPAAP 148
Query: 363 K---------------GIIIVKLRRGQELRLR 413
K I++VK+ +GQEL +R
Sbjct: 149 KHPDFGRPVGHDGSIAPIMLVKMSKGQELDIR 180
[101][TOP]
>UniRef100_C5FPK3 RNA polymerase II subunit 3 n=1 Tax=Microsporum canis CBS 113480
RepID=C5FPK3_NANOT
Length = 359
Score = 110 bits (274), Expect = 6e-23
Identities = 63/140 (45%), Positives = 89/140 (63%), Gaps = 6/140 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+ RR +++E+PT+AID+VEIEVN+SVL DEFI+HRLGLIPL S+ M +SR
Sbjct: 43 DLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDTDMLYSR 102
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY-----SSDHTVVPVDFSPDTSS 347
DCD +G C+ C + L KC ++E + V ++DL +++ PV P+
Sbjct: 103 DCDC---EGGCQRCVINLSLHAKCTSEEIMKVYARDLVVVGDRANEWVGNPVLTDPE--- 156
Query: 348 DSAVNKGIIIVKLRRGQELR 407
KG II KLRRGQE++
Sbjct: 157 ----GKGPIICKLRRGQEVK 172
[102][TOP]
>UniRef100_C1H5R6 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H5R6_PARBA
Length = 352
Score = 110 bits (274), Expect = 6e-23
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA-MRFSR 182
D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AHRLGLIPL S+ A M +SR
Sbjct: 34 DLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAHRLGLIPLNSKNCDADMDYSR 93
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCD +G C C V L V+C ++ + V ++DL SP + A
Sbjct: 94 DCDC---EGGCARCIVMLSLNVRCTGEDVMKVYARDLIIVGDRANEWVGSPVIT--DAEG 148
Query: 363 KGIIIVKLRRGQELRL 410
KG +I KL RGQEL++
Sbjct: 149 KGPVICKLSRGQELKM 164
[103][TOP]
>UniRef100_C1GI99 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GI99_PARBD
Length = 352
Score = 110 bits (274), Expect = 6e-23
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA-MRFSR 182
D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AHRLGLIPL S+ A M +SR
Sbjct: 34 DLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAHRLGLIPLNSKNCDADMDYSR 93
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCD +G C C V L V+C ++ + V ++DL SP + A
Sbjct: 94 DCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDLIIVGDRANEWVGSPVIT--DAEG 148
Query: 363 KGIIIVKLRRGQELRL 410
KG +I KL RGQEL++
Sbjct: 149 KGPVICKLSRGQELKM 164
[104][TOP]
>UniRef100_C0SC71 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SC71_PARBP
Length = 283
Score = 110 bits (274), Expect = 6e-23
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA-MRFSR 182
D + AN+LRR M++E+PT+AID+VEIE N+SVL DEF+AHRLGLIPL S+ A M +SR
Sbjct: 34 DLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAHRLGLIPLNSKNCDADMDYSR 93
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCD +G C C V L V+C ++ + V ++DL SP + A
Sbjct: 94 DCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDLIIVGDRANEWVGSPVIT--DAEG 148
Query: 363 KGIIIVKLRRGQELRL 410
KG +I KL RGQEL++
Sbjct: 149 KGPVICKLSRGQELKM 164
[105][TOP]
>UniRef100_A1DHL4 RNA polymerase II subunit 3 n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1DHL4_NEOFI
Length = 336
Score = 110 bits (274), Expect = 6e-23
Identities = 63/136 (46%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+ + ++R
Sbjct: 32 DLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DC+ D C CSV L +C DE + V ++DL S ++ D
Sbjct: 92 DCECED---HCARCSVTLTLHARCTGDEIMPVYARDLVVSGERA--NEWVGDPVITDPEG 146
Query: 363 KGIIIVKLRRGQELRL 410
KG +I KLRRGQEL++
Sbjct: 147 KGPLICKLRRGQELKM 162
[106][TOP]
>UniRef100_P37382 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces pombe RepID=RPB3_SCHPO
Length = 297
Score = 110 bits (274), Expect = 6e-23
Identities = 60/142 (42%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER-----AMA 167
T ++AN+LRRV+++E+PT+AIDLVEI VN+SV+ DEF+AHRLG+IPL S +
Sbjct: 24 TSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVG 83
Query: 168 MRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSS 347
+ ++R+CD D C CSVE L KC + T+++ ++DL S ++ + D S
Sbjct: 84 LEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKS 140
Query: 348 DSAVNKGIIIVKLRRGQELRLR 413
+G +I KLR+ QE+ LR
Sbjct: 141 -----RGPLICKLRKEQEISLR 157
[107][TOP]
>UniRef100_A5DQ44 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DQ44_PICGU
Length = 305
Score = 109 bits (273), Expect = 8e-23
Identities = 64/135 (47%), Positives = 86/135 (63%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HRLG+IPL SE + +SRD
Sbjct: 28 DLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHRLGMIPLNSEGIDNLSYSRD 87
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C CSV+ L KC +D T+ V + DL + H + D +
Sbjct: 88 CTC---DQYCPNCSVKLELTAKCDSDSTMSVYATDL-AKFHNGSKLG---DPVVRDHHQR 140
Query: 366 GIIIVKLRRGQELRL 410
G +I KLR+ QELRL
Sbjct: 141 GPLICKLRKHQELRL 155
[108][TOP]
>UniRef100_Q1DX59 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
RepID=Q1DX59_COCIM
Length = 345
Score = 108 bits (271), Expect = 1e-22
Identities = 65/140 (46%), Positives = 90/140 (64%), Gaps = 5/140 (3%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAHRLGLIPL S+ + M ++R
Sbjct: 33 DLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNCDVDMVYAR 92
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
+CD +G C C + L KC + + V ++DL VV D + + + +N
Sbjct: 93 ECDC---EGGCSRCVITLQLHAKCTGEGVMVVYARDL------VVVGDRANEWVGNPVIN 143
Query: 363 ----KGIIIVKLRRGQELRL 410
KG II KLRRGQE+++
Sbjct: 144 DPAGKGPIICKLRRGQEVKM 163
[109][TOP]
>UniRef100_C5P0B5 DNA-directed RNA polymerase II 45 kDa polypeptide, putative n=1
Tax=Coccidioides posadasii C735 delta SOWgp
RepID=C5P0B5_COCP7
Length = 345
Score = 108 bits (271), Expect = 1e-22
Identities = 65/140 (46%), Positives = 90/140 (64%), Gaps = 5/140 (3%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAHRLGLIPL S+ + M ++R
Sbjct: 33 DLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNCDVDMVYAR 92
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
+CD +G C C + L KC + + V ++DL VV D + + + +N
Sbjct: 93 ECDC---EGGCSRCLITLQLHAKCTGEGVMVVYARDL------VVVGDRANEWVGNPVIN 143
Query: 363 ----KGIIIVKLRRGQELRL 410
KG II KLRRGQE+++
Sbjct: 144 DPAGKGPIICKLRRGQEVKM 163
[110][TOP]
>UniRef100_C5GT99 RNA polymerase II subunit 3 n=2 Tax=Ajellomyces dermatitidis
RepID=C5GT99_AJEDR
Length = 346
Score = 108 bits (271), Expect = 1e-22
Identities = 65/140 (46%), Positives = 90/140 (64%), Gaps = 5/140 (3%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA-MRFSR 182
D + AN+LRR +++EVPT+AID+VEIE N+SVL DEFIAHRLGLIPL S+ A M +SR
Sbjct: 33 DLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLNSKNCDADMYYSR 92
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSD---- 350
DCD +G C C V L+ +C ++ + V ++DL VV D + + +
Sbjct: 93 DCDC---EGGCARCVVTLSLQARCTGEDIMKVYARDL------VVVGDRANEWVGNPVIT 143
Query: 351 SAVNKGIIIVKLRRGQELRL 410
A KG +I KLRRGQE+++
Sbjct: 144 DAEGKGPLICKLRRGQEIKM 163
[111][TOP]
>UniRef100_C0NSH0 DNA-directed RNA polymerase II polypeptide n=1 Tax=Ajellomyces
capsulatus G186AR RepID=C0NSH0_AJECG
Length = 475
Score = 108 bits (271), Expect = 1e-22
Identities = 63/140 (45%), Positives = 90/140 (64%), Gaps = 5/140 (3%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA-MRFSR 182
D + AN+LRR +++E+PT+AID+VEIE N+SVL DEFI+HRLGLIPL S+ A M +SR
Sbjct: 33 DLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDADMEYSR 92
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSD---- 350
DCD +G C C V L+ +C ++ + V ++DL VV D + + +
Sbjct: 93 DCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL------VVVGDRANEWVGNPVIM 143
Query: 351 SAVNKGIIIVKLRRGQELRL 410
A KG +I KLRRGQE+++
Sbjct: 144 DAEGKGPVICKLRRGQEIKM 163
[112][TOP]
>UniRef100_B2W6Y7 DNA-directed RNA polymerase subunit D n=1 Tax=Pyrenophora
tritici-repentis Pt-1C-BFP RepID=B2W6Y7_PYRTR
Length = 334
Score = 108 bits (271), Expect = 1e-22
Identities = 60/132 (45%), Positives = 82/132 (62%)
Frame = +3
Query: 18 ANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDAC 197
AN+LRRVM+SE+PT+AID+VE+ N+SVL DEF+ HRLGL+PL+S+ + +SRDCD
Sbjct: 34 ANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRLGLVPLSSKGVDDLIYSRDCDC- 92
Query: 198 DGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGIII 377
+G C+ C+V L KC E + V ++DL T P D + G I
Sbjct: 93 --EGYCDNCAVVLSLNAKCTGSEIMKVYARDLVIESRT--PNDEVGKPVITDSEGTGSCI 148
Query: 378 VKLRRGQELRLR 413
VKLRRGQ + +R
Sbjct: 149 VKLRRGQAINMR 160
[113][TOP]
>UniRef100_A2QC01 Catalytic activity: N nucleoside triphosphate <=> N diphosphate +
(RNA)(N) n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QC01_ASPNC
Length = 338
Score = 108 bits (271), Expect = 1e-22
Identities = 64/141 (45%), Positives = 86/141 (60%), Gaps = 6/141 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRRVM+SE+PT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+ + ++R
Sbjct: 32 DLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLISKNCDQDVEYTR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTV-----VPVDFSPDTSS 347
DC+ D C CSV L +C D+ + V ++DL S PV P+
Sbjct: 92 DCECED---HCARCSVTLSLHARCTGDDIMRVYARDLVVSGERANEWVGNPVILDPE--- 145
Query: 348 DSAVNKGIIIVKLRRGQELRL 410
G +I KLRRGQEL++
Sbjct: 146 ----GNGPLICKLRRGQELKM 162
[114][TOP]
>UniRef100_C8V1J2 RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090) n=2
Tax=Emericella nidulans RepID=C8V1J2_EMENI
Length = 333
Score = 108 bits (270), Expect = 2e-22
Identities = 63/141 (44%), Positives = 88/141 (62%), Gaps = 6/141 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRRVM++E+PT+AID+VE+E NSSVL DE +AHRLGLIPL S+ + ++R
Sbjct: 32 DLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAHRLGLIPLDSKNCDQDVEYTR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLY-----SSDHTVVPVDFSPDTSS 347
DC+ D C CSV L +C +DE + V ++DL +++ PV PD
Sbjct: 92 DCECED---HCARCSVTLSLHARCTSDEIMRVYARDLVITGERANEWVGNPVITDPD--- 145
Query: 348 DSAVNKGIIIVKLRRGQELRL 410
G +I KLRRGQEL++
Sbjct: 146 ----GNGPLICKLRRGQELKM 162
[115][TOP]
>UniRef100_A6RAE4 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus
NAm1 RepID=A6RAE4_AJECN
Length = 576
Score = 108 bits (270), Expect = 2e-22
Identities = 62/140 (44%), Positives = 90/140 (64%), Gaps = 5/140 (3%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMA-MRFSR 182
D + AN+LRR +++E+PT+AID+VEIE N+SVL DEFI+HRLGLIPL S+ A M +SR
Sbjct: 56 DLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDADMEYSR 115
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSD---- 350
DCD +G C C V L+ +C ++ + V ++DL V+ D + + +
Sbjct: 116 DCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL------VIVGDRANEWVGNPVIM 166
Query: 351 SAVNKGIIIVKLRRGQELRL 410
A KG +I KLRRGQE+++
Sbjct: 167 DAEGKGPVICKLRRGQEIKM 186
[116][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
Length = 348
Score = 107 bits (268), Expect = 3e-22
Identities = 62/140 (44%), Positives = 86/140 (61%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+ANALRR+M++E+PT+AIDLV I N+SVL+DEFI HRLGL+P+ S + F
Sbjct: 28 TDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFIVHRLGLLPIDSRQIRDFNFK- 86
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSS---DHTVVPVDFSPDTSSDS 353
D C +C CSV++ L +KC +VT D+YS+ + +PV D + +
Sbjct: 87 --DRCGCQERCNKCSVDYTLDLKCEGPTVRNVTHLDIYSTLPVPNIPLPVPRKEDVTDPN 144
Query: 354 AVNKGIIIVKLRRGQELRLR 413
N+GI+I KL GQ L R
Sbjct: 145 --NEGILIAKLGPGQSLTAR 162
[117][TOP]
>UniRef100_UPI000151B3AC conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151B3AC
Length = 305
Score = 107 bits (267), Expect = 4e-22
Identities = 63/135 (46%), Positives = 85/135 (62%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HRLG+IPL SE + +SRD
Sbjct: 28 DLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHRLGMIPLNSEGIDNLSYSRD 87
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C C V+ L KC +D T+ V + DL + H + D +
Sbjct: 88 CTC---DQYCPNCLVKLELTAKCDSDSTMSVYATDL-AKFHNGSKLG---DPVVRDHHQR 140
Query: 366 GIIIVKLRRGQELRL 410
G +I KLR+ QELRL
Sbjct: 141 GPLICKLRKHQELRL 155
[118][TOP]
>UniRef100_C4JV60 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JV60_UNCRE
Length = 345
Score = 107 bits (267), Expect = 4e-22
Identities = 65/140 (46%), Positives = 89/140 (63%), Gaps = 5/140 (3%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRRVM++EVPT+AID+VEIE N+SVL DEFIAHRLGLIPL S+ + M ++R
Sbjct: 33 DLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNCDVDMVYAR 92
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCD +G C C + L KC + + V ++DL VV D + + + +N
Sbjct: 93 DCDC---EGGCSRCIITLQLHAKCTGEGVMVVYARDL------VVIGDRANEWVGNPVIN 143
Query: 363 ----KGIIIVKLRRGQELRL 410
KG II KLRR QE+++
Sbjct: 144 DPAGKGPIICKLRRDQEVKM 163
[119][TOP]
>UniRef100_B6QC30 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC30_PENMQ
Length = 370
Score = 107 bits (267), Expect = 4e-22
Identities = 65/142 (45%), Positives = 88/142 (61%), Gaps = 7/142 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D ++ANALRR MI+EVPT+AID+VE+EVN+SVL DEF+AHRLGLIPL S+ M ++R
Sbjct: 50 DLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDNDMEYNR 109
Query: 183 DCDACDGDGQCEFCSVEFHLRVKC-MTDETLDVTSKDLY-----SSDHTVVPVDFSPDTS 344
DC + C CSV L +C D+ + V S+DL +++ PV P+
Sbjct: 110 DCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDLVVTGDRANEWVGNPVITDPE-- 164
Query: 345 SDSAVNKGIIIVKLRRGQELRL 410
KG +I KL +GQEL+L
Sbjct: 165 -----GKGPLIAKLIKGQELKL 181
[120][TOP]
>UniRef100_B6QC29 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC29_PENMQ
Length = 352
Score = 107 bits (267), Expect = 4e-22
Identities = 65/142 (45%), Positives = 88/142 (61%), Gaps = 7/142 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D ++ANALRR MI+EVPT+AID+VE+EVN+SVL DEF+AHRLGLIPL S+ M ++R
Sbjct: 32 DLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDNDMEYNR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKC-MTDETLDVTSKDLY-----SSDHTVVPVDFSPDTS 344
DC + C CSV L +C D+ + V S+DL +++ PV P+
Sbjct: 92 DCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDLVVTGDRANEWVGNPVITDPE-- 146
Query: 345 SDSAVNKGIIIVKLRRGQELRL 410
KG +I KL +GQEL+L
Sbjct: 147 -----GKGPLIAKLIKGQELKL 163
[121][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CSH3_CRYPV
Length = 355
Score = 107 bits (266), Expect = 5e-22
Identities = 60/138 (43%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI HR+GLIPL S F
Sbjct: 29 TDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIVHRMGLIPLDSTNIRDFNFK- 87
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYS-SDHTVVPVDFSPDTSSDSAV 359
D C+ +C CSVE+ L V C T +VT D+ + T+VP+ S +
Sbjct: 88 --DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQPVATSTLVPMPVPKKDDSVDGM 145
Query: 360 NKGIIIVKLRRGQELRLR 413
N GI+I KL GQ + +R
Sbjct: 146 NNGILIAKLGPGQRIAMR 163
[122][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
RepID=Q5CNH1_CRYHO
Length = 355
Score = 107 bits (266), Expect = 5e-22
Identities = 60/138 (43%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI HR+GLIPL S F
Sbjct: 29 TDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIVHRMGLIPLDSTNIRDFNFK- 87
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYS-SDHTVVPVDFSPDTSSDSAV 359
D C+ +C CSVE+ L V C T +VT D+ + T+VP+ S +
Sbjct: 88 --DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQPVATSTLVPMPVPKKDDSVDGM 145
Query: 360 NKGIIIVKLRRGQELRLR 413
N GI+I KL GQ + +R
Sbjct: 146 NNGILIAKLGPGQRIAMR 163
[123][TOP]
>UniRef100_A8XFM5 C. briggsae CBR-RPB-3 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XFM5_CAEBR
Length = 280
Score = 107 bits (266), Expect = 5e-22
Identities = 66/145 (45%), Positives = 91/145 (62%), Gaps = 8/145 (5%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFS 179
TD S+AN+LRRV ++EVPTIAID V+IE N+SVL+DEFIAHR+GLIP S+ M+++
Sbjct: 26 TDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDEFIAHRMGLIPFLSDYHVEKMQYT 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL--YSSDHTVVP-----VDFSPD 338
R C+ C+ CS+ F L+ KC + TL VT+ DL + TV P +
Sbjct: 86 R----CECAEFCDECSIPFILQTKCTDEATLAVTTADLRPLGVETTVRPACGEALRERGA 141
Query: 339 TSSDSAVNKGIIIVKLRRGQELRLR 413
+ + I+IVKLR+GQEL L+
Sbjct: 142 VRDEFHAREEILIVKLRKGQELNLK 166
[124][TOP]
>UniRef100_Q2UF63 RNA polymerase II n=1 Tax=Aspergillus oryzae RepID=Q2UF63_ASPOR
Length = 342
Score = 107 bits (266), Expect = 5e-22
Identities = 64/141 (45%), Positives = 85/141 (60%), Gaps = 6/141 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRR M++EVPTIAIDLVE+E N+SVL DEF+AHRLGLIPL S+ + ++R
Sbjct: 32 DLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTV-----VPVDFSPDTSS 347
DC+ D C CSV L +C D+ + V ++DL S PV P+
Sbjct: 92 DCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVSGERANEWVGNPVITDPE--- 145
Query: 348 DSAVNKGIIIVKLRRGQELRL 410
G +I KLRRGQEL++
Sbjct: 146 ----GNGPLICKLRRGQELKM 162
[125][TOP]
>UniRef100_B8NGG7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8NGG7_ASPFN
Length = 338
Score = 107 bits (266), Expect = 5e-22
Identities = 64/141 (45%), Positives = 85/141 (60%), Gaps = 6/141 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRR M++EVPTIAIDLVE+E N+SVL DEF+AHRLGLIPL S+ + ++R
Sbjct: 32 DLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTV-----VPVDFSPDTSS 347
DC+ D C CSV L +C D+ + V ++DL S PV P+
Sbjct: 92 DCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVSGERANEWVGNPVITDPE--- 145
Query: 348 DSAVNKGIIIVKLRRGQELRL 410
G +I KLRRGQEL++
Sbjct: 146 ----GNGPLICKLRRGQELKM 162
[126][TOP]
>UniRef100_A9URC4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9URC4_MONBE
Length = 276
Score = 106 bits (265), Expect = 7e-22
Identities = 61/135 (45%), Positives = 81/135 (60%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D ++AN+ RRVMI+EVPT+AID V I N+SVL+DEF+AHRLGLIPLTSE A + RD
Sbjct: 31 DLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDEFLAHRLGLIPLTSEAADKFYYPRD 90
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C C+ C+ C V L V+ T+E VT+ DL S +S +
Sbjct: 91 CTLCEMG--CDHCQVMLTLDVEGHTEEPTHVTTDDLISQAAGDFMAVKPISAREESNIRN 148
Query: 366 GIIIVKLRRGQELRL 410
I+I KL +GQ ++L
Sbjct: 149 PIVICKLAKGQRIQL 163
[127][TOP]
>UniRef100_B8M3N2 RNA polymerase II subunit 3 n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8M3N2_TALSN
Length = 353
Score = 106 bits (265), Expect = 7e-22
Identities = 64/142 (45%), Positives = 88/142 (61%), Gaps = 7/142 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D ++ANALRR MI+EVPT+AID+VE+EVN+SV+ DEF+AHRLGLIPL S+ M ++R
Sbjct: 32 DLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAHRLGLIPLNSKHCDNDMEYNR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKC-MTDETLDVTSKDLY-----SSDHTVVPVDFSPDTS 344
DC + C CSV L +C D+ + V S+DL +++ PV P+
Sbjct: 92 DCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDLVVTGDRANEWVGNPVITDPE-- 146
Query: 345 SDSAVNKGIIIVKLRRGQELRL 410
KG +I KL +GQEL+L
Sbjct: 147 -----GKGPLIAKLIKGQELKL 163
[128][TOP]
>UniRef100_UPI0000E242AB PREDICTED: similar to RNA polymerase II subunit hRPB33 isoform 2
n=1 Tax=Pan troglodytes RepID=UPI0000E242AB
Length = 242
Score = 105 bits (263), Expect = 1e-21
Identities = 62/121 (51%), Positives = 81/121 (66%), Gaps = 3/121 (2%)
Frame = +3
Query: 60 IAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEF 236
+AID V+I+ NSSVL+DEFIAHRLGLIPL S+ + +++SRDC + C CSVEF
Sbjct: 12 LAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEF 68
Query: 237 HLRVKCMTDETLDVTSKDLYSSDHTVVPVDF--SPDTSSDSAVNKGIIIVKLRRGQELRL 410
L V+C D+T VTS+DL S+ V+PV + +D I+IVKLR+GQELRL
Sbjct: 69 TLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRL 128
Query: 411 R 413
R
Sbjct: 129 R 129
[129][TOP]
>UniRef100_B0D0L9 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D0L9_LACBS
Length = 304
Score = 105 bits (263), Expect = 1e-21
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 20/156 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRRVM++++PT+AID+VEIE+N++VL DEFIAHRLG++PL S A+R +R
Sbjct: 29 DLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAHRLGMVPLLSSNCDEAIRSTR 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSA-- 356
DC G C FC++ L V C D T++VTS L V+P +SDS
Sbjct: 89 DCTCLAG---CSFCAIMLVLNVGCHDDTTMEVTSAHL-----DVIPYPEENLDTSDSGEE 140
Query: 357 -----------VNKG------IIIVKLRRGQELRLR 413
V K I+I K+R+GQEL+++
Sbjct: 141 LSKRGEYFGHPVGKNEPGVAPILICKIRKGQELKVK 176
[130][TOP]
>UniRef100_A8N5W0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N5W0_COPC7
Length = 366
Score = 105 bits (263), Expect = 1e-21
Identities = 62/156 (39%), Positives = 88/156 (56%), Gaps = 20/156 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+ RRV+++++PT+AIDLVE E N+SVL DE+IAHRLG IPL S A+R++R
Sbjct: 28 DLAFANSFRRVVMADIPTVAIDLVEFEANTSVLPDEYIAHRLGQIPLISTNCDEAIRYTR 87
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVD------------ 326
DC QC +C+V+ L V C D T++VTS L VVP+D
Sbjct: 88 DCTCL---SQCSYCAVQLRLDVACNDDTTMEVTSNHL-----EVVPLDDYMQEEIQHGEE 139
Query: 327 -------FSPDTSSDSAVNKGIIIVKLRRGQELRLR 413
F + ++I K+R+GQELR++
Sbjct: 140 KAKRTQWFGHPVGKNEPGTPPVLICKIRKGQELRVK 175
[131][TOP]
>UniRef100_P16370 DNA-directed RNA polymerase II subunit RPB3 n=6 Tax=Saccharomyces
cerevisiae RepID=RPB3_YEAST
Length = 318
Score = 105 bits (262), Expect = 2e-21
Identities = 63/135 (46%), Positives = 87/135 (64%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEFIAHRLGLIPL S + +SRD
Sbjct: 26 DLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRD 85
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C+ CSV L+ ++ T +V SKDL + ++ + D N
Sbjct: 86 CFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVSN-LMGRNIGHPIIQDKEGN- 140
Query: 366 GIIIVKLRRGQELRL 410
G++I KLR+GQEL+L
Sbjct: 141 GVLICKLRKGQELKL 155
[132][TOP]
>UniRef100_A4R7L3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4R7L3_MAGGR
Length = 330
Score = 105 bits (261), Expect = 2e-21
Identities = 60/144 (41%), Positives = 88/144 (61%), Gaps = 8/144 (5%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+AN++RRVM++E+PT+AID EI+ N+SVL DEFIAHRLGL+PL++ A + ++RD
Sbjct: 35 DLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRLGLVPLSARGASELVYARD 94
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDE---TLDVTSKDLYSSDHTV-----VPVDFSPDT 341
CD + CE CSV + KC +++ + V ++D+ V PV PD
Sbjct: 95 CDC---EQYCENCSVIITIHAKCESEDPNYVMKVYARDMVVDGRRVNQSVGTPVITDPD- 150
Query: 342 SSDSAVNKGIIIVKLRRGQELRLR 413
G+I+ KLRR QE+ +R
Sbjct: 151 ------GLGVILFKLRRNQEVHIR 168
[133][TOP]
>UniRef100_Q6FPN4 Similar to uniprot|P16370 Saccharomyces cerevisiae YIL021w RPB3 n=1
Tax=Candida glabrata RepID=Q6FPN4_CANGA
Length = 312
Score = 104 bits (260), Expect = 3e-21
Identities = 61/135 (45%), Positives = 87/135 (64%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEF+AHRLGLIPL S + +SRD
Sbjct: 26 DLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAHRLGLIPLQSTDIEQLEYSRD 85
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C+ CSV L+ ++ T +V +KDL + ++ + D N
Sbjct: 86 CFCED---HCDKCSVVLTLQAVGESESTTNVYAKDLLIVSN-LMGRNIGHPIIQDKEGN- 140
Query: 366 GIIIVKLRRGQELRL 410
G++I KLR+GQEL+L
Sbjct: 141 GVLICKLRKGQELKL 155
[134][TOP]
>UniRef100_Q6CQL6 KLLA0D16170p n=1 Tax=Kluyveromyces lactis RepID=Q6CQL6_KLULA
Length = 307
Score = 104 bits (260), Expect = 3e-21
Identities = 63/136 (46%), Positives = 86/136 (63%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D ++AN+LRRVMISE+PT+AID VEIE N++VL DEFIAHRLGLIPL S + + RD
Sbjct: 26 DLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAHRLGLIPLQSADIDQVVYCRD 85
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C+ CSVE L ++ T +V +KDL + + + D N
Sbjct: 86 CYCED---HCDRCSVELILHAIGESESTTNVYAKDLQITS-DLKGRNIGHPIIQDREAN- 140
Query: 366 GIIIVKLRRGQELRLR 413
G++I KLR+GQE+R++
Sbjct: 141 GVLICKLRKGQEIRVK 156
[135][TOP]
>UniRef100_Q0UL31 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UL31_PHANO
Length = 335
Score = 104 bits (260), Expect = 3e-21
Identities = 58/132 (43%), Positives = 81/132 (61%)
Frame = +3
Query: 18 ANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDAC 197
AN+LRRVM++E+PT+AID+VE+ N+SVL DEF+ HRLGLIPL+S + ++RDCD
Sbjct: 34 ANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHRLGLIPLSSRGVDDLLYARDCDC- 92
Query: 198 DGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGIII 377
+G C+ C+V L KC E + V ++DL + P D + G I
Sbjct: 93 --EGYCDNCAVVLSLNAKCTGSEIMKVFARDLVIESNR--PNDEVGRPVITDSEGTGSCI 148
Query: 378 VKLRRGQELRLR 413
VKLRRGQ + +R
Sbjct: 149 VKLRRGQAINMR 160
[136][TOP]
>UniRef100_Q75B05 ADL120Cp n=1 Tax=Eremothecium gossypii RepID=Q75B05_ASHGO
Length = 311
Score = 103 bits (256), Expect = 8e-21
Identities = 62/136 (45%), Positives = 85/136 (62%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+AN+LRR+MI+E+PT+AID VEIE N+SVL DEFI+HRLGL+PL S+ + + RD
Sbjct: 26 DLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISHRLGLVPLQSKDIDQLVYCRD 85
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C+ CSV L ++ T +V +KDL + + D N
Sbjct: 86 CFCED---HCDRCSVLLTLHAVGESESTTNVYAKDLQIVS-DLGGKNIGHPIIQDKEAN- 140
Query: 366 GIIIVKLRRGQELRLR 413
G++I KLR+GQELRL+
Sbjct: 141 GVLICKLRKGQELRLK 156
[137][TOP]
>UniRef100_C4R7L2 RNA polymerase II third largest subunit B44, part of central core
n=1 Tax=Pichia pastoris GS115 RepID=C4R7L2_PICPG
Length = 304
Score = 102 bits (255), Expect = 1e-20
Identities = 63/139 (45%), Positives = 89/139 (64%), Gaps = 5/139 (3%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 191
S+AN+LRR M++EVPT+AIDLVEI++N+SVL DEFI+HRLGLIPL SE M++SRDC
Sbjct: 27 SLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEFISHRLGLIPLVSEDVEEMKYSRDCT 86
Query: 192 ACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAV---- 359
D C+ CSV L + +E + D+YSS +++ V + + V
Sbjct: 87 CED---YCDECSVVLELSARHEGEE----GTTDVYSS--SLIKVSGPGNLNVGEPVRRDD 137
Query: 360 -NKGIIIVKLRRGQELRLR 413
++GI++ KLR QEL +R
Sbjct: 138 YDQGILLCKLRNHQELNIR 156
[138][TOP]
>UniRef100_C5DHI5 KLTH0E04598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DHI5_LACTC
Length = 328
Score = 102 bits (254), Expect = 1e-20
Identities = 61/136 (44%), Positives = 87/136 (63%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFI+HRLGLIPL S + + RD
Sbjct: 26 DITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISHRLGLIPLQSSDINDLIYCRD 85
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C+ CSV L+ ++ T +V +KDL + ++ + D N
Sbjct: 86 CYCED---HCDRCSVVLTLQAVGESESTTNVYAKDLVIVSN-LMGRNIGHPIIQDKDGN- 140
Query: 366 GIIIVKLRRGQELRLR 413
G++I KLR+GQEL+L+
Sbjct: 141 GVLICKLRKGQELKLK 156
[139][TOP]
>UniRef100_C5DWL5 ZYRO0D15796p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DWL5_ZYGRC
Length = 308
Score = 102 bits (253), Expect = 2e-20
Identities = 61/136 (44%), Positives = 86/136 (63%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
+ ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFIAHRLGLIPL S + + RD
Sbjct: 26 ELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAHRLGLIPLQSTDIEQLEYCRD 85
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C D C+ CSV L+ ++ T +V +KDL + ++ + D N
Sbjct: 86 CFCED---HCDKCSVVLTLQAIGESESTTNVYAKDLVIVSN-LMGRNLGHPIIQDKEGN- 140
Query: 366 GIIIVKLRRGQELRLR 413
G++I KLR+GQEL L+
Sbjct: 141 GVLICKLRKGQELTLK 156
[140][TOP]
>UniRef100_B6GWS8 Pc12g07350 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GWS8_PENCW
Length = 335
Score = 99.4 bits (246), Expect = 1e-19
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MAMRFSR 182
D + AN+LRR +++EVPT+A+DL+EIE N+SVL DEF+AHRLG+IPL S + ++R
Sbjct: 32 DLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAHRLGMIPLNSYNCDQDLDYTR 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
DCD D C CSV L +C + + V ++DL + P T+ N
Sbjct: 92 DCDCED---HCVRCSVTLSLHARCGSG-IMSVYARDLIVVGERINDKIGDPVTTDPE--N 145
Query: 363 KGIIIVKLRRGQELRL 410
KG +I KLR+GQE+++
Sbjct: 146 KGPLICKLRKGQEVKM 161
[141][TOP]
>UniRef100_B3L2P7 Dna-directed rna polymerase II, putative n=1 Tax=Plasmodium
knowlesi strain H RepID=B3L2P7_PLAKH
Length = 334
Score = 98.6 bits (244), Expect = 2e-19
Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
++ +ANALRR+M+SE+PT+AID+V + N+S +DEF+AHRLGLIP+ S F
Sbjct: 32 SNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHRLGLIPIDSRNVKNFEFRE 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH---TVVPVDFSPDTSSDS 353
C + C C++++ ++VKC +DVT D+ S +H +PV F D ++
Sbjct: 92 KCKCKE---TCSKCTIQYLIQVKCNNVSKIDVTHYDIESVEHEPNVPMPVPFE-DRNNKM 147
Query: 354 AVNKGIIIVKLRRGQELRLR 413
A + I IV L + Q L ++
Sbjct: 148 AQSNAIPIVTLSKNQTLHMK 167
[142][TOP]
>UniRef100_UPI000069DABC DNA-directed RNA polymerase II subunit RPB3 (RNA polymerase II
subunit B3) (RNA polymerase II subunit 3) (DNA-directed
RNA polymerase II subunit C) (DNA-directed RNA
polymerase II 33 kDa polypeptide) (RPB33) (RPB31). n=1
Tax=Xenopus (Silurana) tropicalis RepID=UPI000069DABC
Length = 275
Score = 98.2 bits (243), Expect = 3e-19
Identities = 63/141 (44%), Positives = 93/141 (65%), Gaps = 4/141 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
TD +IAN++RRV I+EVPTIAID V+I+ NSSVL+DEFIAHR+GLIPLTS+ + +++S
Sbjct: 26 TDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDEFIAHRVGLIPLTSDDIVDKLQYS 85
Query: 180 RDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVT--SKDLYSSDHTVVPVDFSPDTSSDS 353
R +G C C+ +F + C+ + +T +K + ++ ++ S D +
Sbjct: 86 RGNSVTEG---CR-CANKFTGLLGCLPFPSFQITQVTKLVNTTFFSLQVTSRSRDNDPND 141
Query: 354 AVNK-GIIIVKLRRGQELRLR 413
V + I+IVKLR+GQELRLR
Sbjct: 142 YVEQDDILIVKLRKGQELRLR 162
[143][TOP]
>UniRef100_A4HH22 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
braziliensis RepID=A4HH22_LEIBR
Length = 337
Score = 97.8 bits (242), Expect = 3e-19
Identities = 60/135 (44%), Positives = 81/135 (60%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A + F +D
Sbjct: 27 DSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKRLNFPQD 86
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C C G G C C + L+V+C ++ SK ++ D + S + SA
Sbjct: 87 C-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDSLQID---SAEVYPVSAEEH 137
Query: 366 GIIIVKLRRGQELRL 410
GI +V L R Q L L
Sbjct: 138 GIWLVTLGRSQVLDL 152
[144][TOP]
>UniRef100_Q8I2S6 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8I2S6_PLAF7
Length = 335
Score = 97.4 bits (241), Expect = 4e-19
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
+++ IANALRR+M+SE+PT+AID+V + N+S +DEFIAHRLGLIP+ S F
Sbjct: 30 SNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFIAHRLGLIPIDSRNVNNYEFRE 89
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTV-VPVDFSPDTSSDSAV 359
C + C C++++ + VKC +DV+ D+ S +H VP+ P + +S
Sbjct: 90 KCKCKE---TCSKCTIQYIIEVKCNHSNKIDVSHYDIESLEHEPNVPMPI-PHGNKNSVS 145
Query: 360 NKGIIIVKLRRGQELRLR 413
I IV L + Q L ++
Sbjct: 146 ENAIPIVTLSKNQTLHMK 163
[145][TOP]
>UniRef100_C4V9J5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4V9J5_NOSCE
Length = 233
Score = 97.4 bits (241), Expect = 4e-19
Identities = 53/105 (50%), Positives = 68/105 (64%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
T S ANALRR++ISEVPT+ IDLVEIE+N++ L DE I+HRLGL+PL +++ + R
Sbjct: 20 TYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHRLGLVPLYTKKDLVFR--- 76
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVV 317
D C D C+ CSV L V TD + VT KDL S D V+
Sbjct: 77 --DDCACDDICDKCSVSLTLNVSNNTDMPMVVTCKDLKSQDDVVI 119
[146][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
strain Friedlin RepID=Q4FY45_LEIMA
Length = 337
Score = 96.3 bits (238), Expect = 1e-18
Identities = 59/135 (43%), Positives = 80/135 (59%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A + F +D
Sbjct: 27 DSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKRLNFPQD 86
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C C G G C C + L+V+C ++ SK ++ D + + SA
Sbjct: 87 C-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDSLQID---DAEVYPVSAEEH 137
Query: 366 GIIIVKLRRGQELRL 410
GI +V L R Q L L
Sbjct: 138 GIWLVTLGRSQVLDL 152
[147][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
GT1 RepID=B9PNQ8_TOXGO
Length = 484
Score = 96.3 bits (238), Expect = 1e-18
Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D SIAN LRRVMISEVP++AIDLV + N+SVL+DE+I+HRLGL+P+ S R D
Sbjct: 171 DVSIANGLRRVMISEVPSLAIDLVTVYENTSVLHDEYISHRLGLLPIDSTRVAEFVNRDD 230
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD--------------HTVVPV 323
CD D C CSV++ L V C D L VT +D+ + + +PV
Sbjct: 231 CDCAD---HCSRCSVQYALDVVCERDSLL-VTHRDIVADNARGASLASAGFLDLGCPMPV 286
Query: 324 DFSPDTSSDSAVNKGIIIVKLRRGQELRLR 413
+ GI IVKLR+ Q + +R
Sbjct: 287 PLLREMQEKEM--DGIPIVKLRKNQSVNMR 314
[148][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
RepID=B6KGB1_TOXGO
Length = 484
Score = 96.3 bits (238), Expect = 1e-18
Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D SIAN LRRVMISEVP++AIDLV + N+SVL+DE+I+HRLGL+P+ S R D
Sbjct: 171 DVSIANGLRRVMISEVPSLAIDLVTVYENTSVLHDEYISHRLGLLPIDSTRVAEFVNRDD 230
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD--------------HTVVPV 323
CD D C CSV++ L V C D L VT +D+ + + +PV
Sbjct: 231 CDCAD---HCSRCSVQYALDVVCERDSLL-VTHRDIVADNARGASLASAGFLDLGCPMPV 286
Query: 324 DFSPDTSSDSAVNKGIIIVKLRRGQELRLR 413
+ GI IVKLR+ Q + +R
Sbjct: 287 PLLREMQEKEM--DGIPIVKLRKNQSVNMR 314
[149][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
infantum RepID=A4I451_LEIIN
Length = 337
Score = 96.3 bits (238), Expect = 1e-18
Identities = 59/135 (43%), Positives = 80/135 (59%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A + F +D
Sbjct: 27 DSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKRLNFPQD 86
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNK 365
C C G G C C + L+V+C ++ SK ++ D + + SA
Sbjct: 87 C-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDSLQID---DAEVYPVSAEEH 137
Query: 366 GIIIVKLRRGQELRL 410
GI +V L R Q L L
Sbjct: 138 GIWLVTLGRSQVLDL 152
[150][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
Length = 363
Score = 95.9 bits (237), Expect = 1e-18
Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 1/137 (0%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S AN LRRVM++EVP + I+ V I N+SVL DE IAHR+GL+PL S +A M+++RD
Sbjct: 53 DNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLYSMKARRMQYARD 112
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDE-TLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
C C G G C C + L+V C +++ +L V L D V PV S+
Sbjct: 113 C-LCGGSG-CGECQINGELKVSCPSNKHSLQVFMDSLKIDDEEVYPV---------SSEE 161
Query: 363 KGIIIVKLRRGQELRLR 413
G+ ++ L R QEL LR
Sbjct: 162 HGVWLLTLGRSQELNLR 178
[151][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
RepID=CNJC_TETTH
Length = 310
Score = 95.9 bits (237), Expect = 1e-18
Identities = 60/141 (42%), Positives = 86/141 (60%), Gaps = 8/141 (5%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+AN+LRR++++E+ TIAI V++ N+S L DE+IAHRLGLIPL S + + +
Sbjct: 24 DISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHRLGLIPLNSAKVDDYNYIWN 83
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL-YSSDHT----VVPVDFSPDTSSD 350
C+ G+C+ C++ F LRV T+E L+VTS DL DHT V P+ D
Sbjct: 84 CNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQDHTDEDAVRPIKVY-SILRD 139
Query: 351 SAVNK---GIIIVKLRRGQEL 404
NK GI I+KL +GQ++
Sbjct: 140 EYGNKREVGIPIIKLSKGQQI 160
[152][TOP]
>UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2
Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG
Length = 337
Score = 95.5 bits (236), Expect = 2e-18
Identities = 57/137 (41%), Positives = 82/137 (59%), Gaps = 1/137 (0%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S AN LRRV+++EVP + ++ V I N+SVL DE IAHR+GL+PL S+RA M+F D
Sbjct: 27 DNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLYSKRAKQMQFFHD 86
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDE-TLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
C C G G C C + L+V+C +++ +L V + L D V PV S+
Sbjct: 87 C-LCGGTG-CIECQITGELKVRCPSNQHSLQVFADSLKIDDEGVYPV---------SSEE 135
Query: 363 KGIIIVKLRRGQELRLR 413
+G+ ++ L R QE+ LR
Sbjct: 136 RGVWLLTLGRSQEINLR 152
[153][TOP]
>UniRef100_Q4Z7P9 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium berghei
RepID=Q4Z7P9_PLABE
Length = 331
Score = 94.7 bits (234), Expect = 3e-18
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
++A++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR+GLIP+ S + F
Sbjct: 28 SNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRIGLIPIDSRNIKSYEFRE 87
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTV-VPVDFSPDTSSDS-- 353
C + C C+V++ + VKC ++V+ D+ + DH +P+ D +++
Sbjct: 88 RCKCKE---TCSRCTVQYIIEVKCNNANKINVSHYDIEALDHEPNIPMPIPNDNKNNNIE 144
Query: 354 AVNKGIIIVKLRRGQELRLR 413
+ I IV L + Q + ++
Sbjct: 145 KMENAIPIVTLSKNQTIHMK 164
[154][TOP]
>UniRef100_Q4XR41 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
chabaudi RepID=Q4XR41_PLACH
Length = 331
Score = 94.7 bits (234), Expect = 3e-18
Identities = 50/140 (35%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
++ ++ANALRR+M+SEVPT+A+D+V + N+S +DEFIAHR+GLIP+ S + F
Sbjct: 28 SNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRIGLIPIDSRNIKSYEFRE 87
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTV-VPVDFSPDTSSDS-- 353
C + C C+V++ + VKC +DV+ D+ + DH +P+ D ++
Sbjct: 88 RCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHEPNIPMPIPNDNKHNNID 144
Query: 354 AVNKGIIIVKLRRGQELRLR 413
++ I IV L + Q L ++
Sbjct: 145 KMDTAIPIVTLSKNQTLHMK 164
[155][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5LCN7_9ALVE
Length = 336
Score = 94.7 bits (234), Expect = 3e-18
Identities = 60/142 (42%), Positives = 80/142 (56%), Gaps = 9/142 (6%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 191
+IANALRR+MI+EVPT+AID V IE NSS L DEF+AHRLGL+P+ S+ + +DC
Sbjct: 35 AIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVAHRLGLLPINSKEVDSYSDPKDCQ 94
Query: 192 ACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH-TVVPVDFSP------DTSSD 350
C C+V++ L V DVT D+ D T +P P D +
Sbjct: 95 CY---SSCPNCTVKYTLDVIAEDHGVTDVTHLDIQPVDQGTSIPESRRPLPVPLWDRTKT 151
Query: 351 SAVNK--GIIIVKLRRGQELRL 410
N+ GI+I KLRR Q+L +
Sbjct: 152 EEENRRNGIVIAKLRRNQQLTM 173
[156][TOP]
>UniRef100_A5K6U4 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium vivax
RepID=A5K6U4_PLAVI
Length = 333
Score = 94.7 bits (234), Expect = 3e-18
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
++ +ANALRR+M+SE+PT+AID+V + N+S +DEF+AHRLGLIP+ S F
Sbjct: 31 SNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHRLGLIPIDSTNVKNFEFRE 90
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDH---TVVPVDFSPDTSSDS 353
C + C C++++ ++VKC +++T D+ S +H +PV D ++
Sbjct: 91 KCKCKE---TCSKCTIQYLIQVKCNNVSKIEITHHDIESVEHEPNVPMPVPLE-DRNNQM 146
Query: 354 AVNKGIIIVKLRRGQELRLR 413
A + I IV L + Q L ++
Sbjct: 147 AESNAIPIVTLSKNQTLHMK 166
[157][TOP]
>UniRef100_Q8SRR5 DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN n=1 Tax=Encephalitozoon
cuniculi RepID=Q8SRR5_ENCCU
Length = 240
Score = 94.7 bits (234), Expect = 3e-18
Identities = 56/137 (40%), Positives = 77/137 (56%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
T ANALRR++ISEVPTIAID+VEIE N++VL DE +AHRLGLIP+ S+R + +
Sbjct: 21 TTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGLIPIYSKRELKYK--- 77
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
+ C G C CSV F + V D V+++D+ + V+ +
Sbjct: 78 --EECSCSGFCSECSVVFEIDVVHTDDTLRTVSTRDIVCDEEDVI-------------IK 122
Query: 363 KGIIIVKLRRGQELRLR 413
G +I KL R Q L+ R
Sbjct: 123 SGPVITKLARDQGLKAR 139
[158][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
RepID=Q4UFZ3_THEAN
Length = 354
Score = 94.4 bits (233), Expect = 4e-18
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 9/146 (6%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
+D S ANA+RRV++SE+P++AI++V + N+SVL+DE+I+HRLGL+P+ S A F
Sbjct: 29 SDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISHRLGLLPIDSTLASEFEFRD 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD---------HTVVPVDFSP 335
C D +C C+V++ L V C + VT D+ D + +P+ +
Sbjct: 89 RCQCTD---KCAKCTVDYTLDVSCNDSNSRLVTHFDIVPDDTHSKSIYGKNLPMPIPRAD 145
Query: 336 DTSSDSAVNKGIIIVKLRRGQELRLR 413
T+ + A + GI IVKL+RGQ + ++
Sbjct: 146 VTNFNGATD-GIPIVKLKRGQSINMK 170
[159][TOP]
>UniRef100_A9BL73 Rpb3 n=1 Tax=Cryptophyta RepID=A9BL73_9CRYP
Length = 307
Score = 94.4 bits (233), Expect = 4e-18
Identities = 60/145 (41%), Positives = 86/145 (59%), Gaps = 9/145 (6%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
T+ SI N+LRRVMI+EVPT AIDL+ IE+NSSV++DEF++HRLGL+PL S A R++R
Sbjct: 23 TNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSHRLGLLPLFSNFAHEFRYTR 82
Query: 183 DCDACDGDGQCEFCSVEFHLRVKC--------MTD-ETLDVTSKDLYSSDHTVVPVDFSP 335
+CD + C CS +F L + TD T+D Y + P+ +S
Sbjct: 83 ECDC---EQYCSKCSFKFSLDIYAEKFPQSIFSTDLNTIDKKENFFYQQ---INPIHYS- 135
Query: 336 DTSSDSAVNKGIIIVKLRRGQELRL 410
+ ++ K I+I KL GQ ++L
Sbjct: 136 -SLKETLDQKPILIGKLGIGQRIKL 159
[160][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N9T5_THEPA
Length = 354
Score = 94.0 bits (232), Expect = 5e-18
Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 9/146 (6%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
+D S ANA+RRV++SE+P++AI++V + N+SVL+DE+I+HRLGL+P+ S A F
Sbjct: 29 SDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHDEYISHRLGLLPIDSTLASEFEFRD 88
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSD---------HTVVPVDFSP 335
C D +C C+V++ L V C ++ VT D+ D + +P+ +
Sbjct: 89 RCQCTD---KCAKCTVDYTLDVSCKDSDSRVVTHFDIVPDDTHSKSIYGKNLPMPIPRAD 145
Query: 336 DTSSDSAVNKGIIIVKLRRGQELRLR 413
T+ + A + GI IVKL+RG + ++
Sbjct: 146 VTNFNGATD-GIPIVKLKRGHSINMK 170
[161][TOP]
>UniRef100_Q9AW23 DNA-directed RNA polymerase II n=1 Tax=Guillardia theta
RepID=Q9AW23_GUITH
Length = 299
Score = 93.6 bits (231), Expect = 6e-18
Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Frame = +3
Query: 18 ANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDAC 197
AN++RR+M++E+PT+AID V IE N+S DEFIAHRLGLIP+ SE A +++SR+CD
Sbjct: 23 ANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRLGLIPIFSENADLIKYSRECDC- 81
Query: 198 DGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSA--VNKGI 371
+ +CE CS+ F L V E +S S+ + F + S +S + I
Sbjct: 82 --ENECEKCSILFTLDVHANETEKTITSSMVKCSTACYPLKTFFIINNSGNSRNYDDYAI 139
Query: 372 IIVKLRRGQELRLR 413
II KL GQ ++L+
Sbjct: 140 IIAKLNPGQNIKLK 153
[162][TOP]
>UniRef100_Q7RLX3 Conjugation stage-specific protein, putative n=1 Tax=Plasmodium
yoelii yoelii RepID=Q7RLX3_PLAYO
Length = 335
Score = 93.2 bits (230), Expect = 8e-18
Identities = 49/140 (35%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
+++++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR+GLIP+ S F
Sbjct: 32 SNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRIGLIPIDSRNIKNYEFRE 91
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTV-VPVDFSPDTSSDS-- 353
C + C C+V++ + VKC +DV+ D+ + DH +P+ D +++
Sbjct: 92 RCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHEPNIPMPIPNDNKNNNIE 148
Query: 354 AVNKGIIIVKLRRGQELRLR 413
+ I I+ L + Q + ++
Sbjct: 149 KMENAIPILTLSKNQTIHMK 168
[163][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
RepID=A7AWB4_BABBO
Length = 382
Score = 89.0 bits (219), Expect = 2e-16
Identities = 45/96 (46%), Positives = 66/96 (68%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D + AN+LRR+M+SE+P++AI++V + N+SVL+DE+IAHRLGL+P+ S A +
Sbjct: 30 DVATANSLRRIMLSEIPSLAIEVVTVLENTSVLHDEYIAHRLGLLPIESSSARNFEYRDK 89
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL 293
C D +C C+VE+ L VKCM D+T VT D+
Sbjct: 90 CTCSD---KCSRCTVEYSLDVKCM-DDTRVVTHYDI 121
[164][TOP]
>UniRef100_Q7SHT0 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Neurospora crassa RepID=Q7SHT0_NEUCR
Length = 378
Score = 88.2 bits (217), Expect = 3e-16
Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASIANA RR+MI+++PT+AI+ + + N+SV+ DE + HRLGLIP T + F +
Sbjct: 83 DASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLKW 142
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---LYSSDHTVV-PVDFSPD----- 338
G+ C++ +VE L+VKC +E+ SKD LY + H + F P
Sbjct: 143 YK--KGETPCDYNTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKFVPKGRQAK 200
Query: 339 -TSSDSAV---NKGIIIVKLRRGQELRL 410
S ++A+ N I++ K+R GQE+ L
Sbjct: 201 YFSGENAIRPTNPDILVAKMRPGQEIDL 228
[165][TOP]
>UniRef100_Q6IP84 MGC78824 protein n=1 Tax=Xenopus laevis RepID=Q6IP84_XENLA
Length = 347
Score = 87.4 bits (215), Expect = 4e-16
Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASIANA RR+++SEVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ + S D
Sbjct: 69 DASIANAFRRILLSEVPTVAVEKVYVYNNTSIIQDEILAHRLGLIPIRADPRLFEYRSAD 128
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVP----VD 326
D +G E +++F L VKC + D +Y+ +P VD
Sbjct: 129 ----DAEG-TEIDTLQFELNVKCTRNPRASKDCSDPNELYLNHKVYTGHMKWLPQGNQVD 183
Query: 327 FSPDTSSDSAVNKGIIIVKLRRGQELRL 410
P+T V+K I+I +LR GQE+ +
Sbjct: 184 LFPETDPPRPVHKDILIAQLRPGQEINV 211
[166][TOP]
>UniRef100_Q5CJZ9 DNA-directed RNA polymerase I n=1 Tax=Cryptosporidium hominis
RepID=Q5CJZ9_CRYHO
Length = 344
Score = 86.3 bits (212), Expect = 1e-15
Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASIANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRLGLIP+ + + D
Sbjct: 75 DASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRLGLIPMLIDPNTIEFRNED 134
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDE---TLDVTSKDLYSSDHTVVPVDFSP----DTS 344
D + + C F L VKC D+ +TSK +YS D +P+ + S
Sbjct: 135 EDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSKDLVWIPLSDNQRKKFGKS 188
Query: 345 SDSAVNKGIIIVKLRRGQEL 404
V I+I KLR GQ +
Sbjct: 189 PPKVVTDDILITKLRPGQSI 208
[167][TOP]
>UniRef100_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
n=1 Tax=Trichomonas vaginalis G3 RepID=A2F4R6_TRIVA
Length = 322
Score = 85.9 bits (211), Expect = 1e-15
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 15/146 (10%)
Frame = +3
Query: 18 ANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDAC 197
ANALRRVMI+EVPT+A+D VE N+S L DE+IAHRL LIP SE A + C+ C
Sbjct: 37 ANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAHRLALIPFVSEDADKFFYHSQCN-C 95
Query: 198 DGD--GQCEFCSVEFHLRVKC--MTDETLDVTSKDL-------YSSDHTV--VPVDFSPD 338
DG G C C+V + + C +D ++VTS DL ++ T+ + + P
Sbjct: 96 DGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDLKLIAPHKWADKSTMGSIHIGVKPA 155
Query: 339 T--SSDSAVNKGIIIVKLRRGQELRL 410
T ++ + + + I KL GQ LRL
Sbjct: 156 TLFANGDSNPQPVTITKLAPGQTLRL 181
[168][TOP]
>UniRef100_B2A971 Predicted CDS Pa_1_8610 n=1 Tax=Podospora anserina
RepID=B2A971_PODAN
Length = 372
Score = 85.5 bits (210), Expect = 2e-15
Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 16/152 (10%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR- 182
DASIANA RR+MI++VPT+AI+ V + N+SV+ DE +AHRLGLIP T R F +
Sbjct: 72 DASIANAFRRIMIADVPTLAIENVFVWNNTSVIQDEVLAHRLGLIPFTGGREGLTDFLKW 131
Query: 183 DCDACDGD-GQC-EFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVP--- 320
+GD +C +F +V L VKC +E D D +Y+ D P
Sbjct: 132 YRKPANGDPAECKDFNTVALELNVKCEHNENADPNETDPTKLYHHAHVYAKDIVFKPIGR 191
Query: 321 -VDFSPDTSSDSAVNKGIIIVKLRRGQELRLR 413
VD+ VN I+I KLR GQE+ ++
Sbjct: 192 QVDYFSGEDIIRPVNPDILIAKLRPGQEINVQ 223
[169][TOP]
>UniRef100_Q5CPY6 RNA polymerase III C5 subunit n=1 Tax=Cryptosporidium parvum Iowa
II RepID=Q5CPY6_CRYPV
Length = 344
Score = 85.1 bits (209), Expect = 2e-15
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASIANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRLGLIP+ + + D
Sbjct: 75 DASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRLGLIPMLIDPNTIEFRNED 134
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDE---TLDVTSKDLYSSDHTVVPVDFSP----DTS 344
D + + C F L VKC D+ +TSK +YS D +P+ + +
Sbjct: 135 EDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSKDLVWIPLSDNQRKKFGKT 188
Query: 345 SDSAVNKGIIIVKLRRGQEL 404
V I+I KLR GQ +
Sbjct: 189 PPKVVTDDILITKLRPGQSI 208
[170][TOP]
>UniRef100_C9SI18 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Verticillium albo-atrum VaMs.102 RepID=C9SI18_9PEZI
Length = 375
Score = 85.1 bits (209), Expect = 2e-15
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 18/153 (11%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR- 182
DASIANALRR++ISE+PT+AI+ V I N+SV+ DE +AHRLGL+P T+ +A F R
Sbjct: 73 DASIANALRRILISEIPTLAIETVYIYNNTSVIQDEVLAHRLGLVPFTANKAGLRDFLRW 132
Query: 183 ---DCDACDGDGQCEFCSVEFHLRVKCM---------TDETLDVTSKDLYSSDHTVVPVD 326
+ D GD ++ +V+ LR++C D T + +++SD VP
Sbjct: 133 RKKNPDGTPGD-IFDYNTVQLRLRIECTRNPDAAPGEIDSTKAFRNAHVHASDIEYVPSG 191
Query: 327 -----FSPDTSSDSAVNKGIIIVKLRRGQELRL 410
F ++ N I++ KLR GQ L +
Sbjct: 192 RQLEYFDGPLNTVRPTNPDILLAKLRPGQVLEM 224
[171][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
Length = 351
Score = 84.3 bits (207), Expect = 4e-15
Identities = 55/138 (39%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DA++ANALRR+++ EVPT+AI+ V+I NS V+ DE +AHRLGLIP + + + D
Sbjct: 84 DAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRLGLIPFNIDLDLIDFRAED 143
Query: 186 CDACDGDGQCEFCSVEFHLRVKCM---TDETLDVTSKDLYSSDHTVVPVDFSP----DTS 344
D + + C F L V+C D+ +TSK +YS D VP+ S +
Sbjct: 144 QDLNEKNSVC------FKLCVECNKYDIDDKNGITSKAIYSKDLIWVPMSESQKQIFEKK 197
Query: 345 SDSAVNKGIIIVKLRRGQ 398
S V I+I KLR GQ
Sbjct: 198 PPSVVYPDILITKLRPGQ 215
[172][TOP]
>UniRef100_UPI000180C3EB PREDICTED: similar to RNA polymerase 1-1 n=1 Tax=Ciona intestinalis
RepID=UPI000180C3EB
Length = 345
Score = 83.6 bits (205), Expect = 6e-15
Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 9/145 (6%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DA+IANA RR++I+EVPT+AI+ V I N++V+ DE +AHRLGLIPLT++ + D
Sbjct: 66 DAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRLGLIPLTADAKLFEYRQGD 125
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTD-------ETLDVTSK--DLYSSDHTVVPVDFSPD 338
D DG E ++EF L +KC + LDV K +YS D +P+ D
Sbjct: 126 ----DADGTPE-DTLEFELNIKCTKNLSAPKDTTDLDVLYKHHKVYSKDIKWIPLGNQKD 180
Query: 339 TSSDSAVNKGIIIVKLRRGQELRLR 413
+ V I++ KLR G L ++
Sbjct: 181 LLTVKPVYDDILVAKLRPGHILDVK 205
[173][TOP]
>UniRef100_C1BYW4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Esox
lucius RepID=C1BYW4_ESOLU
Length = 263
Score = 83.6 bits (205), Expect = 6e-15
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 12/145 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASIANA RR++++EVPT+A++ V I N+S++ DE +A RLGLIP+ ++ R
Sbjct: 70 DASIANAFRRILLAEVPTMAVEKVFIYNNTSIIQDEVLAQRLGLIPIKAD----PRLFEY 125
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSPD 338
+A D +G E +++ L++KC + S D +YS D T VP+ D
Sbjct: 126 RNAGDEEG-TEIDTIQLQLKIKCTRNHQATKDSADPQELYLNHMVYSKDMTWVPIGNQAD 184
Query: 339 TSSDS---AVNKGIIIVKLRRGQEL 404
+D+ V+ I++ KLR GQEL
Sbjct: 185 VVADANIGPVHGDILLAKLRPGQEL 209
[174][TOP]
>UniRef100_UPI0000E468FB PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E468FB
Length = 335
Score = 83.2 bits (204), Expect = 8e-15
Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 13/149 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
D ++ANA RR++++EVPT+AI+ V I N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 54 DPAVANAFRRILLAEVPTMAIEKVSIFNNTSIIQDEILAHRLGLIPIKADPRIFEYREEG 113
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCM--TDETLDVTSKD-LYSSDHTV------VPVDFSP 335
D D ++EF L+VKC + + D T D LY + +P++
Sbjct: 114 DETGTGED------TIEFQLKVKCTKNPNASKDATDPDELYKNAKVTTEHFKWIPLENQE 167
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRLR 413
+T A VNK I+I KLR GQE+ L+
Sbjct: 168 ETYGPKAFAPVNKDILIAKLRPGQEIDLK 196
[175][TOP]
>UniRef100_C0SF50 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SF50_PARBP
Length = 345
Score = 83.2 bits (204), Expect = 8e-15
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 19/152 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERAMAMRFS 179
DASIANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E +R+
Sbjct: 37 DASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGINWLRWF 96
Query: 180 R---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPV 323
R + D G ++ ++ HL VKC + +D +Y+ D T PV
Sbjct: 97 RQPNEGDPSSGSELADYNTIVLHLNVKCKKNPKASPDEQDPLKLYSHAHVYAKDITFQPV 156
Query: 324 D-----FSPDTSSDSAVNKGIIIVKLRRGQEL 404
F N I++ KLR GQ++
Sbjct: 157 GRQEAYFPEPDGGIRPTNPDILLAKLRPGQKI 188
[176][TOP]
>UniRef100_UPI0000EDC949 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Ornithorhynchus anatinus RepID=UPI0000EDC949
Length = 346
Score = 82.8 bits (203), Expect = 1e-14
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+T++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVFVYNNTSIMQDEVLAHRLGLIPITADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D + + D +++F L+VKC + + S D +Y+ T VP+
Sbjct: 129 DEEGTEID------TLQFQLKVKCTWNPSAAKDSSDPNQLYLNHKVYTKHMTWVPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + A V+ I+I +LR GQEL L
Sbjct: 183 DLFPEGAIRPVHDDILITQLRPGQELDL 210
[177][TOP]
>UniRef100_C1BKA8 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BKA8_OSMMO
Length = 351
Score = 82.8 bits (203), Expect = 1e-14
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 12/145 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DA+IANA RR+M++EVPT+A++ V I N+S++ DE +AHRLGLIP+ ++ + +
Sbjct: 70 DAAIANAFRRIMLAEVPTMAVEKVYIYNNTSIIQDEILAHRLGLIPIKADPRLFEYRNIG 129
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSPD 338
+ + +G E +++ L++KC + S D +YS D VP+ D
Sbjct: 130 EEGGEEEG-TEIDTIQLQLKIKCTRNPRAPKDSSDPRELYLNHMVYSKDMKWVPIGNQAD 188
Query: 339 TSSDS---AVNKGIIIVKLRRGQEL 404
+D+ V+ I+I +LR GQEL
Sbjct: 189 VFADANIGPVHGDILIAQLRPGQEL 213
[178][TOP]
>UniRef100_B3S4F3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S4F3_TRIAD
Length = 349
Score = 82.8 bits (203), Expect = 1e-14
Identities = 56/147 (38%), Positives = 85/147 (57%), Gaps = 12/147 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASIANA RR+M+SEVP +AI+ V I N+S++ DE +AHRLGLIP+ ++ + F+
Sbjct: 67 DASIANAYRRIMLSEVPAMAIEKVVIHNNTSIIQDEVLAHRLGLIPIAADPKLFDNFN-- 124
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETL--DVTS-KDLY-SSDHTVVPVDFSPDTSSDS 353
GD S+ F L++KC+ + + D T ++LY +S T + + D+
Sbjct: 125 ----PGDTPTNKNSITFTLQIKCIRNRSAHSDATDPEELYINSKVTTKDLKLKYNEDQDN 180
Query: 354 A--------VNKGIIIVKLRRGQELRL 410
A V++ I+I KLR GQE+ L
Sbjct: 181 AIPNKDIRPVHEDILIAKLRPGQEIDL 207
[179][TOP]
>UniRef100_C1GK69 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GK69_PARBD
Length = 380
Score = 82.8 bits (203), Expect = 1e-14
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 19/152 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERAMAMRFS 179
DASIANA RR++ISE+P++AI+ V I N+SV+ DE +AHRLGL+PLT E +R+
Sbjct: 72 DASIANAFRRILISEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGINWLRWF 131
Query: 180 R---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPV 323
R + D G ++ ++ HL V+C + +D +Y+ D T PV
Sbjct: 132 RQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPDEQDPLKLYSHAHVYAKDITFQPV 191
Query: 324 D-----FSPDTSSDSAVNKGIIIVKLRRGQEL 404
F N I++ KLR GQ++
Sbjct: 192 GRQEAYFPEPDGGIRPTNPDILLAKLRPGQKI 223
[180][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
Length = 308
Score = 82.0 bits (201), Expect = 2e-14
Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 6/142 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D SIANA+RRVMI+EVP +AI V+I N+S L+DEF+A RLGLIPL S A + + +
Sbjct: 31 DLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQRLGLIPLVSYAADSKMYDWE 90
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDL-----YSSDHTVVPVD-FSPDTSS 347
DA D Q V F LR K + D L++TS+ L + + PV FSP
Sbjct: 91 ADADSIDDQ--KTKVVFTLRQKNLNDAPLEITSQHLEPEFGQVGEMAIRPVRMFSPINGK 148
Query: 348 DSAVNKGIIIVKLRRGQELRLR 413
+ GI I +L + Q + +R
Sbjct: 149 E----VGIPITRLGKNQSVHVR 166
[181][TOP]
>UniRef100_A4R0T4 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4R0T4_MAGGR
Length = 373
Score = 82.0 bits (201), Expect = 2e-14
Identities = 57/151 (37%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASIANA RR+MI+E+P++AI+ V I N+SV+ DE +A RLGL+PL + +F +
Sbjct: 73 DASIANAFRRIMIAEIPSLAIERVFITNNTSVIQDEVLAQRLGLVPLKGSKEGLRKFMKP 132
Query: 186 CDACDG---DGQCEFCSVEFHLRVKCM---------TDETLDVTSKDLYSSDHTVVPVDF 329
+ D +F +V L VKC D ++Y+SD VP
Sbjct: 133 FKRTETGGFDNSFDFNTVNLRLNVKCTRNPDAKPGENDPNKAYIKPNVYASDIEFVPAGQ 192
Query: 330 SPD-TSSDSA---VNKGIIIVKLRRGQELRL 410
D S D A VN I+I KLR GQ + L
Sbjct: 193 QTDYFSGDGAIVPVNPDILIAKLRPGQGIDL 223
[182][TOP]
>UniRef100_Q6DRM8 RNA polymerase I 140 kDa subunit n=1 Tax=Danio rerio
RepID=Q6DRM8_DANRE
Length = 343
Score = 81.6 bits (200), Expect = 2e-14
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+AI+ V I N+S++ DE +AHRLGL+P+ ++ R R S
Sbjct: 66 DAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPIKADPRLFEYRNSE 125
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D + + D +++ L+VKC + S D +YS D +P+
Sbjct: 126 DQEGTEID------TIQLQLKVKCTRNPRAPKDSSDPKELYLNHMIYSGDIKWLPIGNQA 179
Query: 336 DTSSDS---AVNKGIIIVKLRRGQEL 404
D +D+ V+ I++ ++R GQEL
Sbjct: 180 DVFADAKIGPVHGDILLAQVRPGQEL 205
[183][TOP]
>UniRef100_A2ATX1 Polymerase (RNA) I polypeptide C n=2 Tax=Danio rerio
RepID=A2ATX1_DANRE
Length = 362
Score = 81.6 bits (200), Expect = 2e-14
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+AI+ V I N+S++ DE +AHRLGL+P+ ++ R R S
Sbjct: 85 DAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPIKADPRLFEYRNSE 144
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D + + D +++ L+VKC + S D +YS D +P+
Sbjct: 145 DQEGTEID------TIQLQLKVKCTRNPRAPKDSSDPKELYLNHMIYSGDIKWLPIGNQA 198
Query: 336 DTSSDS---AVNKGIIIVKLRRGQEL 404
D +D+ V+ I++ ++R GQEL
Sbjct: 199 DVFADAKIGPVHGDILLAQVRPGQEL 224
[184][TOP]
>UniRef100_B6GYD0 Pc12g12250 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GYD0_PENCW
Length = 374
Score = 81.6 bits (200), Expect = 2e-14
Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 19/154 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSERAMAMRFS 179
DA++ANA RR++++E+PTIAI+ I N+SV+ DE +A RLGLIPL + E M +
Sbjct: 72 DAAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLASRLGLIPLKGSIEGINWMHWF 131
Query: 180 RDCDACDG----DGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVP 320
+ DG DG C+F ++ HL V+C +E D +D +Y+ D +P
Sbjct: 132 KKASE-DGSEEEDGPCDFNTIVLHLDVECYKNEYADKDEQDPRKLYTNAHVYAKDLMYMP 190
Query: 321 V----DFSPDTSSDSAVNKGIIIVKLRRGQELRL 410
V + + + VN I+I KLR GQ++ +
Sbjct: 191 VGRQEQYFVGDGAIAPVNPDILIAKLRPGQKIEM 224
[185][TOP]
>UniRef100_UPI000175846B PREDICTED: similar to CG3756 CG3756-PA n=1 Tax=Tribolium castaneum
RepID=UPI000175846B
Length = 338
Score = 80.9 bits (198), Expect = 4e-14
Identities = 52/144 (36%), Positives = 85/144 (59%), Gaps = 11/144 (7%)
Frame = +3
Query: 15 IANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSRDCD 191
+AN RR+M+S+VPT+AI+ V I N+S++ DE +AHRLGLIPL ++ R M+ R
Sbjct: 66 LANTFRRLMLSDVPTMAIEKVHILNNTSIIQDEVLAHRLGLIPLKADPRLFEMKTDRKSS 125
Query: 192 ACDGDGQCEFCSVEFHLRVKCMT--DETLD-VTSKDLYSSDHTV------VPVDFSPDTS 344
+G Q ++EF L++KC D + D + ++D+Y +++ VP+ +
Sbjct: 126 TAEGTEQ---DTLEFALKIKCTNNKDSSKDSLRAEDMYKNNNVYSKHIKWVPIGKQKERF 182
Query: 345 SD-SAVNKGIIIVKLRRGQELRLR 413
SD ++ I+I K+R G EL L+
Sbjct: 183 SDVGPIHPDILIAKMRPGHELDLK 206
[186][TOP]
>UniRef100_C1H4P1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H4P1_PARBA
Length = 380
Score = 80.9 bits (198), Expect = 4e-14
Identities = 53/152 (34%), Positives = 79/152 (51%), Gaps = 19/152 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERAMAMRFS 179
DASIANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E +R+
Sbjct: 72 DASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGINWLRWF 131
Query: 180 R---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPV 323
R + D G ++ ++ HL V+C + D +Y+ D T PV
Sbjct: 132 RQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPNELDPLKLYSHAHVYAKDITFQPV 191
Query: 324 D-----FSPDTSSDSAVNKGIIIVKLRRGQEL 404
F N I++ KLR GQ++
Sbjct: 192 GRQEAYFPEPDGGIRPTNPDILLAKLRPGQKI 223
[187][TOP]
>UniRef100_B2WCA1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Pyrenophora tritici-repentis Pt-1C-BFP
RepID=B2WCA1_PYRTR
Length = 376
Score = 80.9 bits (198), Expect = 4e-14
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 23/159 (14%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMR---F 176
D S+ANA RR+++SE+PT+AI+ V I N+S++ DE +AHRLGLIPL +RA R +
Sbjct: 70 DTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRATLRRMKWY 129
Query: 177 SRDCDACDGD-GQCEFCSVEFHLRVKCM-------------TDETLDVTSKDLYSSDHTV 314
++ D +G G +V L+ KC TD ++Y+ D
Sbjct: 130 AKPTDEDEGSGGPTSENTVALTLKTKCTWQPGGVARAVAGETDPDRLYVGHNVYAKDMRF 189
Query: 315 VPVDFSPDTSSDS------AVNKGIIIVKLRRGQELRLR 413
P + S++ + N I+I K+R GQEL +R
Sbjct: 190 EPNGNQAENLSEAEGKHIRSTNPDILICKMRPGQELEIR 228
[188][TOP]
>UniRef100_UPI00016E11AB UPI00016E11AB related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AB
Length = 347
Score = 80.5 bits (197), Expect = 5e-14
Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+I NA RR++++EVPT+AI+ V I N+S++ DE +AHRLGLIP+ ++ R R S
Sbjct: 66 DAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQDEVLAHRLGLIPIKADPRLFEYRNSG 125
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D +A + +G E +++ L++ C + S D +YS D VP+
Sbjct: 126 D-EATENEGS-EIDTIQLQLKISCSRNPASSKDSSDPRELYLNHMVYSKDIHWVPIGNQA 183
Query: 336 DTSSDSA---VNKGIIIVKLRRGQEL 404
D ++ + V+ I+I +LR GQEL
Sbjct: 184 DVFANCSIGPVHGDILIAQLRPGQEL 209
[189][TOP]
>UniRef100_UPI00016E11AA UPI00016E11AA related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AA
Length = 351
Score = 80.5 bits (197), Expect = 5e-14
Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+I NA RR++++EVPT+AI+ V I N+S++ DE +AHRLGLIP+ ++ R R S
Sbjct: 70 DAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQDEVLAHRLGLIPIKADPRLFEYRNSG 129
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D +A + +G E +++ L++ C + S D +YS D VP+
Sbjct: 130 D-EATENEGS-EIDTIQLQLKISCSRNPASSKDSSDPRELYLNHMVYSKDIHWVPIGNQA 187
Query: 336 DTSSDSA---VNKGIIIVKLRRGQEL 404
D ++ + V+ I+I +LR GQEL
Sbjct: 188 DVFANCSIGPVHGDILIAQLRPGQEL 213
[190][TOP]
>UniRef100_A7AQ72 DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein n=1 Tax=Babesia bovis
RepID=A7AQ72_BABBO
Length = 319
Score = 80.5 bits (197), Expect = 5e-14
Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
+ +IANA+RR++++EVPT+AI+ V I N+ V+ DE +AHRLGL+P + + + +
Sbjct: 54 NVAIANAIRRILLAEVPTLAIESVHIYQNTGVIQDEVLAHRLGLVPFDCNPDL-IPYRDN 112
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV-DFSPDTSSDS--- 353
D D + C FHL+V+C + T+ +Y+ D VP+ D + D+
Sbjct: 113 EDLSDKNSVC------FHLKVECKKESLAGRTNLPVYAGDMKWVPLSDEQAELFKDNPPK 166
Query: 354 AVNKGIIIVKLRRGQELRLR 413
++K I++ KL GQE+ L+
Sbjct: 167 PIHKDILLTKLSPGQEIDLK 186
[191][TOP]
>UniRef100_C6HA00 DNA-directed RNA polymerase I and III n=1 Tax=Ajellomyces
capsulatus H143 RepID=C6HA00_AJECH
Length = 380
Score = 80.5 bits (197), Expect = 5e-14
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 19/152 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERAMAMRFS 179
DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE +R+
Sbjct: 72 DAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRWF 131
Query: 180 R---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPV 323
R + G ++ +V HL V+C + D +Y+ D T PV
Sbjct: 132 RQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKDITFHPV 191
Query: 324 D-----FSPDTSSDSAVNKGIIIVKLRRGQEL 404
F + N I++ KLR GQ++
Sbjct: 192 GRQETYFQEPDGVIRSANPDILLAKLRPGQKI 223
[192][TOP]
>UniRef100_C0NBQ0 DNA-directed RNA polymerase I and III polypeptide n=1
Tax=Ajellomyces capsulatus G186AR RepID=C0NBQ0_AJECG
Length = 380
Score = 80.5 bits (197), Expect = 5e-14
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 19/152 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERAMAMRFS 179
DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE +R+
Sbjct: 72 DAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRWF 131
Query: 180 R---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPV 323
R + G ++ +V HL V+C + D +Y+ D T PV
Sbjct: 132 RQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKDITFHPV 191
Query: 324 D-----FSPDTSSDSAVNKGIIIVKLRRGQEL 404
F + N I++ KLR GQ++
Sbjct: 192 GRQETYFQEPDGVIRSANPDILLAKLRPGQKI 223
[193][TOP]
>UniRef100_B6JXY4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6JXY4_SCHJY
Length = 349
Score = 80.5 bits (197), Expect = 5e-14
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 12/147 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASI NA RR++I+E+PT+AI+ V I N+S+L DE ++HRLGLIPL ++ M F R
Sbjct: 66 DASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDEVLSHRLGLIPLKADPDMFKWFVRP 125
Query: 186 CDACDGDGQCEFCSVEFHLRVKC---------MTDETLDVTSKDLYSSDHTVVPVDFSPD 338
+ ++ +V F L VKC TD + ++ S + P +
Sbjct: 126 GPGMEAT-HTDYDTVVFSLNVKCDFNKEAAPGETDPKKLYLNSEVLSGELVWKPQGRQAE 184
Query: 339 TSSD---SAVNKGIIIVKLRRGQELRL 410
+D + VN I++ KLR GQE+ L
Sbjct: 185 RFADNPLTVVNPNIVVAKLRPGQEIDL 211
[194][TOP]
>UniRef100_A8Q352 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
7966 RepID=A8Q352_MALGO
Length = 270
Score = 80.5 bits (197), Expect = 5e-14
Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 16/130 (12%)
Frame = +3
Query: 72 LVEIEVNSSVLNDEFIAHRLGLIPLTS-ERAMAMRFSRDCDACDGDGQCEFCSVEFHLRV 248
+VEI +N++VL DEF+AHRLG+IPL S + A + R+C DG C+ CSVE L
Sbjct: 1 MVEITINTTVLPDEFLAHRLGMIPLLSMDTAKVLIDQRECSCEDG---CDRCSVELSLDA 57
Query: 249 KCMTDE-TLDVTSKDL---------YSSDHTVVPV-----DFSPDTSSDSAVNKGIIIVK 383
C +D + VTSKDL YS + PV DF D G++IV+
Sbjct: 58 LCTSDRGAMLVTSKDLIRSNTIANMYSDESVFGPVAPRHPDFGKPVGQDDPNANGVVIVQ 117
Query: 384 LRRGQELRLR 413
LR+GQ ++ R
Sbjct: 118 LRKGQHIKAR 127
[195][TOP]
>UniRef100_A6R4R6 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Ajellomyces capsulatus NAm1 RepID=A6R4R6_AJECN
Length = 380
Score = 80.5 bits (197), Expect = 5e-14
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 19/152 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERAMAMRFS 179
DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE +R+
Sbjct: 72 DAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRWF 131
Query: 180 R---DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPV 323
R + G ++ +V HL V+C + D +Y+ D T PV
Sbjct: 132 RQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKDITFHPV 191
Query: 324 D-----FSPDTSSDSAVNKGIIIVKLRRGQEL 404
F + N I++ KLR GQ++
Sbjct: 192 GRQETYFQEPDGVIRSANPDILLAKLRPGQKI 223
[196][TOP]
>UniRef100_UPI0000F2C148 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Monodelphis domestica RepID=UPI0000F2C148
Length = 346
Score = 80.1 bits (196), Expect = 7e-14
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D D + D +++F L+VKC + S D +Y+ T +P+
Sbjct: 129 DEDGTEID------TLQFQLKVKCTRNPQAAKDSSDPNELYLNHKVYTKHMTWIPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQEL L
Sbjct: 183 DVFPEGTIRPVHDDILIAQLRPGQELDL 210
[197][TOP]
>UniRef100_B5X7Z3 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Salmo
salar RepID=B5X7Z3_SALSA
Length = 353
Score = 80.1 bits (196), Expect = 7e-14
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 12/145 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DA+IANA RR++++EVPT+A++ V I N+S++ DE +AHRLGLIP+ ++ R
Sbjct: 76 DAAIANAFRRILLAEVPTMAVEKVLIYNNTSIIQDEILAHRLGLIPIKAD----PRLFEY 131
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSPD 338
+A D +G E +++ L++KC + S D +YS D P+ D
Sbjct: 132 RNAGDEEG-TEIDTIQLQLKIKCTRNPRATKDSADPRELYLNHMVYSKDMKWAPIGNQAD 190
Query: 339 TSSDS---AVNKGIIIVKLRRGQEL 404
+D+ V+ I++ +LR GQEL
Sbjct: 191 VFADANIGPVHGDILLAQLRPGQEL 215
[198][TOP]
>UniRef100_O08521 Homologous to 40kD subunit of RNA-polymerase I and III (Fragment)
n=1 Tax=Cricetulus griseus RepID=O08521_CRIGR
Length = 347
Score = 80.1 bits (196), Expect = 7e-14
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 12/147 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASIANA RR++I+E+PT+A + V I N+S++ DE ++HR+GL+P++++ M F
Sbjct: 65 DASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHP 124
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSPD 338
+ ++ +V F L KC ++ KD +YS D P +
Sbjct: 125 LPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEE 183
Query: 339 TSSDS---AVNKGIIIVKLRRGQELRL 410
+D+ VN I++ KLR GQE+ L
Sbjct: 184 RFADNPIRVVNPDIVVAKLRPGQEIDL 210
[199][TOP]
>UniRef100_O94616 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAC1_SCHPO
Length = 348
Score = 80.1 bits (196), Expect = 7e-14
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 12/147 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASIANA RR++I+E+PT+A + V I N+S++ DE ++HR+GL+P++++ M F
Sbjct: 66 DASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHP 125
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSPD 338
+ ++ +V F L KC ++ KD +YS D P +
Sbjct: 126 LPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEE 184
Query: 339 TSSDS---AVNKGIIIVKLRRGQELRL 410
+D+ VN I++ KLR GQE+ L
Sbjct: 185 RFADNPIRVVNPDIVVAKLRPGQEIDL 211
[200][TOP]
>UniRef100_UPI00004DA7E9 DNA-directed RNA polymerases I and III subunit RPAC1 (RNA
polymerases I and III subunit AC1) (DNA-directed RNA
polymerase I subunit C) (DNA- directed RNA polymerases I
and III 40 kDa polypeptide) (RPA40) (RPA39) (RPC40)
(AC40). n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI00004DA7E9
Length = 347
Score = 79.7 bits (195), Expect = 9e-14
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 13/146 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DASIANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ + R
Sbjct: 69 DASIANAFRRILLAEVPTMAVEKVYVYNNTSIIQDEILAHRLGLIPIRVD----PRLFEY 124
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVP----VD 326
A +G+G E +++F L VKC + D +Y+S +P D
Sbjct: 125 RSAEEGEG-TEIDTLQFELNVKCTRNPRASKDCSDPNELYLNHKVYTSHMKWLPQGNQSD 183
Query: 327 FSPDTSSDSAVNKGIIIVKLRRGQEL 404
P+T V+ I+I +LR GQE+
Sbjct: 184 LFPETDPPRPVHGDILIAQLRPGQEI 209
[201][TOP]
>UniRef100_A2SSV7 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanocorpusculum
labreanum Z RepID=A2SSV7_METLZ
Length = 275
Score = 79.7 bits (195), Expect = 9e-14
Identities = 57/133 (42%), Positives = 75/133 (56%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 191
+ ANALRR MI EVPT+AI+ + I N+SVL DE +AHRLGLIP+ ++ ++ R
Sbjct: 23 AFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIPIKTD--LSQYVPRSEC 80
Query: 192 ACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGI 371
+C G+G C C+V F L V + VTS DL S D VVP V+ I
Sbjct: 81 SCGGEG-CPHCTVMFTLSV----EGPKMVTSGDLISMDENVVP------------VHNNI 123
Query: 372 IIVKLRRGQELRL 410
IVKL Q++ L
Sbjct: 124 PIVKLWENQKVVL 136
[202][TOP]
>UniRef100_B8NHK8 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=2
Tax=Aspergillus RepID=B8NHK8_ASPFN
Length = 373
Score = 79.3 bits (194), Expect = 1e-13
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 17/152 (11%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSERAMAMRFS 179
DASIANA RR++++EVP++AI+ V + N+SV+ DE +A RLGLIPL + + MR+
Sbjct: 72 DASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVDGINWMRWF 131
Query: 180 RDC--DACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPV- 323
+ D +G ++ ++ L ++C + D T D +Y+ D T PV
Sbjct: 132 KKATEDDPEGSDPSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYARDITFHPVG 191
Query: 324 ---DFSPDTSSDSAVNKGIIIVKLRRGQELRL 410
F + VN I+I KLR GQ++ L
Sbjct: 192 RQEQFFTGEDAIQPVNPDILIAKLRPGQKIDL 223
[203][TOP]
>UniRef100_Q2HPH1 RNA polymerase subunit I (Fragment) n=1 Tax=Bos taurus
RepID=Q2HPH1_BOVIN
Length = 250
Score = 79.0 bits (193), Expect = 2e-13
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 16 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 75
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D +G E +++F L+V+C + S D +Y+ T VP+
Sbjct: 76 D------EGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQA 129
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + A V+ I+I +LR GQE+ L
Sbjct: 130 DLFPEGAIRPVHDDILIAQLRPGQEIDL 157
[204][TOP]
>UniRef100_C5GBG6 DNA-directed RNA polymerase I and III polypeptide n=2
Tax=Ajellomyces dermatitidis RepID=C5GBG6_AJEDR
Length = 380
Score = 79.0 bits (193), Expect = 2e-13
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 19/152 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERAMAMRFS 179
DA+IANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT +E +R+
Sbjct: 72 DAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGAAEGINWLRWF 131
Query: 180 RDCDACDGDGQCEFC---SVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPV 323
R D E ++ HL V+C + +D +Y+ D T PV
Sbjct: 132 RQPTEGKPDSGSELSDSNTIVLHLSVECTKNPKASANEEDPQKLYNHAHVYAKDITFHPV 191
Query: 324 D-----FSPDTSSDSAVNKGIIIVKLRRGQEL 404
F + + N I++ KLR GQ++
Sbjct: 192 GRQEAYFPEPYGAIRSANPDILLAKLRPGQKI 223
[205][TOP]
>UniRef100_Q32L22 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Bos
taurus RepID=RPAC1_BOVIN
Length = 346
Score = 79.0 bits (193), Expect = 2e-13
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D +G E +++F L+V+C + S D +Y+ T VP+
Sbjct: 129 D------EGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + A V+ I+I +LR GQE+ L
Sbjct: 183 DLFPEGAIRPVHDDILIAQLRPGQEIDL 210
[206][TOP]
>UniRef100_UPI000194C203 PREDICTED: polymerase (RNA) I polypeptide C, 30kDa n=1
Tax=Taeniopygia guttata RepID=UPI000194C203
Length = 346
Score = 78.6 bits (192), Expect = 2e-13
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 13/146 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D + + D +++F L++KC + S D +YS T VP+
Sbjct: 129 DQEGTEID------TLQFQLKIKCKRNPQAAKESSDPDELYFNHKVYSKHMTWVPLGNQT 182
Query: 336 DTSSDS---AVNKGIIIVKLRRGQEL 404
D D+ V+ I+I LR GQE+
Sbjct: 183 DLFPDADFRPVHDDILIALLRPGQEI 208
[207][TOP]
>UniRef100_Q12ZR3 DNA-directed RNA polymerase subunit D n=1 Tax=Methanococcoides
burtonii DSM 6242 RepID=Q12ZR3_METBU
Length = 267
Score = 78.6 bits (192), Expect = 2e-13
Identities = 57/136 (41%), Positives = 74/136 (54%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSR 182
T A+ AN +RR M+++VPT+AID V I N+SVL DE +A RLGLIPLT+ + +
Sbjct: 20 TTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLALRLGLIPLTT--SFDDFVPQ 77
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
D CDG G C C+V L V+ V S D+ SSD V P D
Sbjct: 78 DKCTCDGAG-CPACTVSLTLSVETDESGQTIVHSGDIVSSDPNVQPAD------------ 124
Query: 363 KGIIIVKLRRGQELRL 410
K I I+ LR GQ++ L
Sbjct: 125 KNIPIIDLRVGQKVVL 140
[208][TOP]
>UniRef100_B8D6F8 DNA-directed RNA polymerase subunit D n=1 Tax=Desulfurococcus
kamchatkensis 1221n RepID=B8D6F8_DESK1
Length = 280
Score = 78.6 bits (192), Expect = 2e-13
Identities = 48/105 (45%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Frame = +3
Query: 15 IANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDC- 188
+ N+LRR ++SEVPT+A+D V I NSSV DE+I+HRLGLIPL S A+ + +C
Sbjct: 24 LVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRLGLIPLKSNEALNKYKPPEECA 83
Query: 189 DACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPV 323
+A D + C V L + L V S+DL SSD VVPV
Sbjct: 84 EAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDLVSSDPDVVPV 128
[209][TOP]
>UniRef100_UPI00003ACD10 PREDICTED: similar to RNA polymerase I subunit hRPA39 isoform 2 n=1
Tax=Gallus gallus RepID=UPI00003ACD10
Length = 346
Score = 78.2 bits (191), Expect = 3e-13
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 13/146 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D + + D +++F L++KC + S D +YS T VP+
Sbjct: 129 DEEGTEID------TLQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQT 182
Query: 336 DTSSDS---AVNKGIIIVKLRRGQEL 404
D D+ V+ I+I LR GQE+
Sbjct: 183 DLFPDADFRPVHDDILIALLRPGQEI 208
[210][TOP]
>UniRef100_B0EJB9 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Entamoeba dispar SAW760 RepID=B0EJB9_ENTDI
Length = 291
Score = 78.2 bits (191), Expect = 3e-13
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+AN LRR+MI+EVPT+AI++V +E NSS + DE + HRLGLIP+ ++ +F +D
Sbjct: 25 DVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHRLGLIPILAD-PRKFKFPKD 83
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN- 362
D E ++ F L V C D + + +YSSD P T +D +
Sbjct: 84 RHFTD---PTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLIWEPQGEQETTFADCPIKP 140
Query: 363 --KGIIIVKLRRGQELRLR 413
I+I +L+ Q ++ +
Sbjct: 141 VFDDILIAELQPHQHIKCK 159
[211][TOP]
>UniRef100_A3DMQ6 DNA-directed RNA polymerase, subunit D n=1 Tax=Staphylothermus
marinus F1 RepID=A3DMQ6_STAMF
Length = 280
Score = 78.2 bits (191), Expect = 3e-13
Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Frame = +3
Query: 15 IANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDC- 188
+ N++RR +I+EVPT+AID V +NSSV DE+IAHRLGLIPLTSE A+ + +C
Sbjct: 24 VLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAALDKYKSPEECR 83
Query: 189 DACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKG 368
+A D E C V+ L K + + + S DL +SD V P V
Sbjct: 84 EAGDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSDPDVKP------------VYDN 131
Query: 369 IIIVKLRRGQELRL 410
I I+ L + QE+RL
Sbjct: 132 IPIIVLGKNQEIRL 145
[212][TOP]
>UniRef100_UPI000023F302 hypothetical protein FG00365.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F302
Length = 381
Score = 77.8 bits (190), Expect = 3e-13
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 18/153 (11%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA---MAMRF 176
DAS+ANA RR+++SE+PT+A++ V IE N+SV+ DE +AHRLGLIP R +++
Sbjct: 79 DASLANAFRRILLSEIPTLAVENVYIENNTSVIQDEVLAHRLGLIPFKGGREGLHNFLKW 138
Query: 177 SRDCDACDGD--GQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVP- 320
+ +A D G ++ +V L V C +E T D +Y+ D VP
Sbjct: 139 HKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEDASPTENDPLKAYHNAHVYARDIVFVPT 198
Query: 321 ---VDFSPDTSSDSAVNKGIIIVKLRRGQELRL 410
++ ++ + N I+I KLR Q + L
Sbjct: 199 GRQAEYFSGENAIAPTNPDILIAKLRPRQTINL 231
[213][TOP]
>UniRef100_Q4PBM5 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4PBM5_USTMA
Length = 320
Score = 77.8 bits (190), Expect = 3e-13
Identities = 57/148 (38%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT-SERAMAMRFSR 182
DASIANA+RRV+++EVPT+AI+ V I N+S++ DE ++HRLGL+PL + +AMR
Sbjct: 113 DASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRLGLVPLAINPDKVAMRM-- 170
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETL--DVTSKDLYSSDHTVVPVDFSPDT----- 341
GD + +V FHL+ KC + + T D H V D
Sbjct: 171 -----PGDEADDSNTVVFHLKAKCERNRSAARGETDPDKLYIGHNVYSEQLRWDAKGGQE 225
Query: 342 -----SSDSAVNKGIIIVKLRRGQELRL 410
S V I+I KLR GQEL L
Sbjct: 226 KDFADSPPRPVQDKILIAKLRPGQELDL 253
[214][TOP]
>UniRef100_A7TPZ5 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TPZ5_VANPO
Length = 320
Score = 77.4 bits (189), Expect = 5e-13
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 12/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D SIANALRR+MISEVP++A + + I N+SV+ DE IA R+GLIPL + + D
Sbjct: 46 DTSIANALRRIMISEVPSVAAEYIYILNNTSVIQDEVIAQRIGLIPLKVDPDRLTWLNND 105
Query: 186 CDACDGDGQCEFCSVEFHLRVKC---------MTDETLDVTSKDLYSSDHTVVPVDFSPD 338
+ + + ++ L VKC TD ++ + +Y+ D P +
Sbjct: 106 LP--EDEKFTDENTIVLSLNVKCTRNLDAPKDCTDPSILYHNAHIYARDLKFEPQGKQEE 163
Query: 339 TSSDSAV---NKGIIIVKLRRGQELRLR 413
T +DS V + I+I KLR GQE+ LR
Sbjct: 164 TFADSPVVSADPDILIAKLRPGQEISLR 191
[215][TOP]
>UniRef100_B1YC30 DNA-directed RNA polymerase subunit D n=1 Tax=Thermoproteus
neutrophilus V24Sta RepID=RPOD_THENV
Length = 262
Score = 77.4 bits (189), Expect = 5e-13
Identities = 56/133 (42%), Positives = 76/133 (57%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 191
S+ N+LRRV+ISE+P +AID V + N+SV+ DE +AHRLGLIPLT+ ++ DC+
Sbjct: 24 SLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLAHRLGLIPLTTP-LQSLPPIEDCE 82
Query: 192 ACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGI 371
+ G C+V F L+V D + V S DL S VVP V+K I
Sbjct: 83 S--GLADPSECTVRFTLQVN--ADGEVTVYSGDLVSERPDVVP------------VHKDI 126
Query: 372 IIVKLRRGQELRL 410
IVKL +GQ + L
Sbjct: 127 PIVKLVKGQSIVL 139
[216][TOP]
>UniRef100_UPI00005A26F8 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 6 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F8
Length = 328
Score = 77.0 bits (188), Expect = 6e-13
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D D E +++F L+V+C + S D +YS T VP+
Sbjct: 129 D------DEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 183 DLFPEGTIRPVHDDILIAQLRPGQEIDL 210
[217][TOP]
>UniRef100_UPI00005A26F7 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 5 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F7
Length = 338
Score = 77.0 bits (188), Expect = 6e-13
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D D E +++F L+V+C + S D +YS T VP+
Sbjct: 129 D------DEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 183 DLFPEGTIRPVHDDILIAQLRPGQEIDL 210
[218][TOP]
>UniRef100_UPI00005A26F6 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 4 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F6
Length = 296
Score = 77.0 bits (188), Expect = 6e-13
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D D E +++F L+V+C + S D +YS T VP+
Sbjct: 129 D------DEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 183 DLFPEGTIRPVHDDILIAQLRPGQEIDL 210
[219][TOP]
>UniRef100_UPI00005A26F4 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 2 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F4
Length = 281
Score = 77.0 bits (188), Expect = 6e-13
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D D E +++F L+V+C + S D +YS T VP+
Sbjct: 129 D------DEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 183 DLFPEGTIRPVHDDILIAQLRPGQEIDL 210
[220][TOP]
>UniRef100_UPI00004A557E PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 1 n=1 Tax=Canis
lupus familiaris RepID=UPI00004A557E
Length = 346
Score = 77.0 bits (188), Expect = 6e-13
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D D E +++F L+V+C + S D +YS T VP+
Sbjct: 129 D------DEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 183 DLFPEGTIRPVHDDILIAQLRPGQEIDL 210
[221][TOP]
>UniRef100_Q29L21 GA17664 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=Q29L21_DROPS
Length = 333
Score = 77.0 bits (188), Expect = 6e-13
Identities = 55/147 (37%), Positives = 83/147 (56%), Gaps = 13/147 (8%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSRDC 188
+IANA RR+M+SEVP++AI+ V I N+S++ DE +AHR+GL+PL ++ R A R
Sbjct: 63 AIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLKADPRLFAYRTEE-- 120
Query: 189 DACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSSDHTV-------VPVDFSPDT 341
G+ E ++E+ L+VKC D + D ++ D +H V +P
Sbjct: 121 ---SGEAGTEQDTLEYELKVKCTRRKDASKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI 177
Query: 342 SSDSAVN---KGIIIVKLRRGQELRLR 413
S+S VN + I+I +LR G EL LR
Sbjct: 178 YSESMVNCIHEDILIAQLRPGHELDLR 204
[222][TOP]
>UniRef100_Q6FXP6 Strain CBS138 chromosome B complete sequence n=1 Tax=Candida
glabrata RepID=Q6FXP6_CANGA
Length = 334
Score = 77.0 bits (188), Expect = 6e-13
Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+ANA RR+MI+EVP +A + V I+ N+SV+ DE +AHR+GL+PL + R
Sbjct: 60 DTSLANAFRRIMIAEVPAVAPEYVYIQNNTSVIQDEVLAHRIGLVPLKVDPEKLERL--- 116
Query: 186 CDACDGDGQCEFCSVEFH--------LRVKC---------MTDETLDVTSKDLYSSDHTV 314
D D D ++EFH L VKC TD T+ + +Y+ D
Sbjct: 117 -DTSDPD------NLEFHDKNTIVMTLNVKCTRNPDAPKDCTDPTILYNNAHVYARDLKF 169
Query: 315 VPVDFSPDTSSDSAV---NKGIIIVKLRRGQELRL 410
P +T +D V + I++ KLR GQE+ L
Sbjct: 170 EPHSSQVETFADCPVVPCDPDILLAKLRPGQEISL 204
[223][TOP]
>UniRef100_Q2NFZ6 DNA-directed RNA polymerase subunit D n=1 Tax=Methanosphaera
stadtmanae DSM 3091 RepID=RPOD_METST
Length = 270
Score = 77.0 bits (188), Expect = 6e-13
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D + N +RR+ + E+PT+AI+ V I N + + DE +AHRLGLIP+ ++ + S
Sbjct: 21 DDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHRLGLIPIVTDLDSYVMPSE- 79
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMT-DETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVN 362
CD + C+ C V F L+ KC +++ V SKDL S D V PV DT
Sbjct: 80 ---CDCESGCQHCRVSFLLKEKCEEGNDSKIVYSKDLKSDDPAVKPV---YDT------- 126
Query: 363 KGIIIVKLRRGQELRL 410
I IV+LR G+E+ L
Sbjct: 127 --IPIVRLREGEEVEL 140
[224][TOP]
>UniRef100_B0W725 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Culex
quinquefasciatus RepID=B0W725_CULQU
Length = 335
Score = 76.6 bits (187), Expect = 8e-13
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 12/146 (8%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 191
+IANA RR+M+SEVP++AI+ V I N+S++ DE +AHRLGLIPL ++ + + + D
Sbjct: 66 AIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDEVLAHRLGLIPLKADPRLFEYKTNEGD 125
Query: 192 ACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSSDHTV-------VPVDFSPDTS 344
A + ++EF L+VKC ++ +VT+ D +H++ VPV
Sbjct: 126 AANAQD-----TLEFELKVKCTKKNKDSTEVTNNDSMYKNHSIYSGQIKWVPVGNQASIY 180
Query: 345 SDS---AVNKGIIIVKLRRGQELRLR 413
++ ++ I+I ++R G E ++
Sbjct: 181 KEADVGPIDDDILISRMRPGHEFDIK 206
[225][TOP]
>UniRef100_Q5KG24 RNA polymerase II subunit 3, putative n=1 Tax=Filobasidiella
neoformans RepID=Q5KG24_CRYNE
Length = 377
Score = 76.6 bits (187), Expect = 8e-13
Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER-AMAMRFSR 182
+ + AN+LRRVM+++VPTIAID V N++ L DE IAHRLGLIPL S + +R++R
Sbjct: 45 ELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAHRLGLIPLISRNVSKGLRYTR 104
Query: 183 DCDACDGDGQCEFCSVEFHLRV 248
DCD +G C +C V L+V
Sbjct: 105 DCDCDEG---CYYCMVTLRLKV 123
[226][TOP]
>UniRef100_Q55RL9 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q55RL9_CRYNE
Length = 377
Score = 76.6 bits (187), Expect = 8e-13
Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER-AMAMRFSR 182
+ + AN+LRRVM+++VPTIAID V N++ L DE IAHRLGLIPL S + +R++R
Sbjct: 45 ELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAHRLGLIPLISRNVSKGLRYTR 104
Query: 183 DCDACDGDGQCEFCSVEFHLRV 248
DCD +G C +C V L+V
Sbjct: 105 DCDCDEG---CYYCMVTLRLKV 123
[227][TOP]
>UniRef100_Q46GD0 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanosarcina
barkeri str. Fusaro RepID=Q46GD0_METBF
Length = 266
Score = 76.6 bits (187), Expect = 8e-13
Identities = 52/133 (39%), Positives = 72/133 (54%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 191
S AN +RR MI++VPT+AI+ V + N+SVL DE +A RL LIPL ++ + +CD
Sbjct: 25 SFANGIRRAMIADVPTLAIEYVNLYENTSVLYDEQLALRLSLIPLVTDVETYVP-QAECD 83
Query: 192 ACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDSAVNKGI 371
C G+G C C V L + V S+DL SSD + P D I
Sbjct: 84 VCGGEG-CPACEVSLTL----SAEGPCTVYSRDLISSDPKIQPAD------------PNI 126
Query: 372 IIVKLRRGQELRL 410
IV+L++GQ+L L
Sbjct: 127 PIVELKKGQKLVL 139
[228][TOP]
>UniRef100_A2QD13 Complex: RCP40 of S. cerevisiae associates with RCP19 of S.
cerevisiae n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QD13_ASPNC
Length = 359
Score = 76.3 bits (186), Expect = 1e-12
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 17/152 (11%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSERAMAMRFS 179
DASIANA RR++++EVP+IAI+ V + N+SV+ DE +A RLGLIPL + E MR+
Sbjct: 72 DASIANAFRRILMAEVPSIAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVEGINWMRWF 131
Query: 180 R--DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPV- 323
+ D +G ++ ++ L V+C + D D +Y+ D T PV
Sbjct: 132 KKPTDDDPNGSSPADYNTIVLRLDVECTKNPNADPEETDPRKLYKNAHVYAKDITFHPVG 191
Query: 324 ---DFSPDTSSDSAVNKGIIIVKLRRGQELRL 410
F + VN I++ KLR GQ + +
Sbjct: 192 RQEQFFAGDDAIQPVNPDILVAKLRPGQAIEM 223
[229][TOP]
>UniRef100_UPI00017936CF PREDICTED: similar to DNA-directed RNA polymerase n=1
Tax=Acyrthosiphon pisum RepID=UPI00017936CF
Length = 325
Score = 75.9 bits (185), Expect = 1e-12
Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 10/146 (6%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
D ++AN+LRRV+ISEVP++AI+ V I N+S + DE +AHRLGLIPL ++ R M+
Sbjct: 52 DVAVANSLRRVIISEVPSMAIEKVHIYQNTSYILDEILAHRLGLIPLKADPRQFKMKEDE 111
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDV------TSKDLYSSDHTVVPVDFSPDTS 344
+ + + D S+ + +++KC T + LD S +Y+ +P+ D
Sbjct: 112 NSEPNEHD------SLVYEMKIKC-TKKDLDALAHKQFISFPVYAKHIKWLPLGNQKDIF 164
Query: 345 SD---SAVNKGIIIVKLRRGQELRLR 413
++ ++ I+I KLR GQE+ L+
Sbjct: 165 TEKDVGIISDDILIAKLRPGQEIELK 190
[230][TOP]
>UniRef100_Q9VMX3 CG3756 n=1 Tax=Drosophila melanogaster RepID=Q9VMX3_DROME
Length = 333
Score = 75.9 bits (185), Expect = 1e-12
Identities = 56/147 (38%), Positives = 82/147 (55%), Gaps = 13/147 (8%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSRDC 188
+IANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+GL+PL ++ R A R
Sbjct: 63 AIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEEST 122
Query: 189 DACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSSDHTV-------VPVDFSPDT 341
+A E ++EF L+VKC D D ++ D +H V +P
Sbjct: 123 EA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI 177
Query: 342 SSDSAVN---KGIIIVKLRRGQELRLR 413
S+SAVN I+I +LR G EL LR
Sbjct: 178 YSESAVNCIHDDILIAQLRPGHELDLR 204
[231][TOP]
>UniRef100_Q8IHT3 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8IHT3_PLAF7
Length = 333
Score = 75.9 bits (185), Expect = 1e-12
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D SIANALRR+M+SEVPTIAI+ V + N+ ++ DE + HRLGLIP + A + + D
Sbjct: 68 DVSIANALRRIMLSEVPTIAIEKVNMYQNTGIIADEILCHRLGLIPFKFD-ADLINYKED 126
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVD----FSPDTSSDS 353
+ + C FC F L VK + T + + +YS D P++ + +
Sbjct: 127 NEKYN-HLNC-FC---FKLHVKFSSKRTGNDNYQSIYSKDLKWCPINEQQRIKFEKNPPK 181
Query: 354 AVNKGIIIVKLRRGQELRL 410
V++ I+I K+ GQE+ L
Sbjct: 182 VVDENILITKISSGQEIEL 200
[232][TOP]
>UniRef100_B4Q356 GD23312 n=1 Tax=Drosophila simulans RepID=B4Q356_DROSI
Length = 333
Score = 75.9 bits (185), Expect = 1e-12
Identities = 56/147 (38%), Positives = 82/147 (55%), Gaps = 13/147 (8%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSRDC 188
+IANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+GL+PL ++ R A R
Sbjct: 63 AIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEEST 122
Query: 189 DACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSSDHTV-------VPVDFSPDT 341
+A E ++EF L+VKC D D ++ D +H V +P
Sbjct: 123 EA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI 177
Query: 342 SSDSAVN---KGIIIVKLRRGQELRLR 413
S+SAVN I+I +LR G EL LR
Sbjct: 178 YSESAVNCIHDDILIAQLRPGHELDLR 204
[233][TOP]
>UniRef100_B3N4C9 GG25034 n=1 Tax=Drosophila erecta RepID=B3N4C9_DROER
Length = 329
Score = 75.9 bits (185), Expect = 1e-12
Identities = 56/147 (38%), Positives = 82/147 (55%), Gaps = 13/147 (8%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSRDC 188
+IANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+GL+PL ++ R A R
Sbjct: 59 AIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEEST 118
Query: 189 DACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSSDHTV-------VPVDFSPDT 341
+A E ++EF L+VKC D D ++ D +H V +P
Sbjct: 119 EA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI 173
Query: 342 SSDSAVN---KGIIIVKLRRGQELRLR 413
S+SAVN I+I +LR G EL LR
Sbjct: 174 YSESAVNCIHDDILIAQLRPGHELDLR 200
[234][TOP]
>UniRef100_Q5KIG6 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q5KIG6_CRYNE
Length = 350
Score = 75.9 bits (185), Expect = 1e-12
Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DASIANALRR +I+EVPT+AI+ V + N+S++ DE + HR+GL+PL + R++ R S
Sbjct: 67 DASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDPRSLRYRPSA 126
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
+ + D +V F LRV+C +D + D +YS VP
Sbjct: 127 NSQPHEHD------TVVFDLRVRCDRRPNVDRSETDPKKMYFDSNVYSGMLKWVPSGDQK 180
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
A VN I++VKLR GQ++ L
Sbjct: 181 KKFKGKAPRPVNDDILLVKLRPGQQVDL 208
[235][TOP]
>UniRef100_Q2HFB1 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2HFB1_CHAGB
Length = 374
Score = 75.9 bits (185), Expect = 1e-12
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 18/153 (11%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRF--- 176
DASIANA RR+MI+++PT+AI+ V I N+SV+ DE ++HRLGLIP +F
Sbjct: 72 DASIANAFRRIMIADIPTLAIETVFINNNTSVIQDEVLSHRLGLIPFKGGHEGLHKFLKW 131
Query: 177 -SRDCDACD-GDGQCEFCSVEFHLRVKCMTDETLDVTSKD---LYSSDHTVV-PVDFSPD 338
+ D + + + +V L V+C +E D LY + H ++F P
Sbjct: 132 WRKPTDESEINNSYYDNNTVSLRLEVQCEHNEKAAAGETDPTKLYKNAHVYARDIEFCPV 191
Query: 339 TSSD---------SAVNKGIIIVKLRRGQELRL 410
D + VN I+I KLR GQE+ L
Sbjct: 192 GRQDKYFSGADAIAPVNPDILIAKLRPGQEISL 224
[236][TOP]
>UniRef100_UPI00017F0A34 PREDICTED: RNA polymerase I subunit hRPA39 n=1 Tax=Sus scrofa
RepID=UPI00017F0A34
Length = 346
Score = 75.5 bits (184), Expect = 2e-12
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 12/147 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHAD----PRLFEY 124
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSPD 338
+ D +G E +++F L+V+C + + S D +Y+ T VP+ D
Sbjct: 125 RNLGDEEG-TEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQAD 183
Query: 339 TSSDSA---VNKGIIIVKLRRGQELRL 410
+ V+ I+I +LR GQE+ L
Sbjct: 184 LFPEGTIRPVHDDILIAQLRPGQEIDL 210
[237][TOP]
>UniRef100_UPI0000D9AD00 PREDICTED: RNA polymerase I subunit n=1 Tax=Macaca mulatta
RepID=UPI0000D9AD00
Length = 291
Score = 75.5 bits (184), Expect = 2e-12
Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 14 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 73
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D D + D ++ F L+V+C + S D +Y+ T +P+
Sbjct: 74 DEDGTEID------TLRFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQA 127
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 128 DLFPEGTIRPVHDDILIAQLRPGQEIDL 155
[238][TOP]
>UniRef100_Q7PPN8 AGAP008771-PA (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7PPN8_ANOGA
Length = 261
Score = 75.5 bits (184), Expect = 2e-12
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 12/146 (8%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 191
+IAN RR+M+SEVP++AI+ V I N+S++ DE +AHRLGLIPL ++ M +
Sbjct: 28 AIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQDEVLAHRLGLIPLRADPRMF-----EYK 82
Query: 192 ACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSSDHTV-------VPVDFSPDTS 344
A + D ++EF L+VKC ++ +VT+ + +H++ VP+
Sbjct: 83 ANETDPPSALDTLEFELKVKCTRKNKDSTEVTNNENMYKNHSIYSGQIKWVPIGNQATIY 142
Query: 345 SDSAV---NKGIIIVKLRRGQELRLR 413
+++AV + I+I K+R G E ++
Sbjct: 143 TEAAVGPIDDDILISKMRPGHEFDIK 168
[239][TOP]
>UniRef100_C8TDY9 Rna polymerase ii b3 subunit n=1 Tax=Eimeria tenella
RepID=C8TDY9_EIMTE
Length = 147
Score = 75.5 bits (184), Expect = 2e-12
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS 152
DASIANALRRVMISEVPT+AIDLV + N+SVL+DE+I HRLGL+P+ S
Sbjct: 62 DASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHRLGLLPIDS 110
[240][TOP]
>UniRef100_B7Q825 Transferase, putative n=1 Tax=Ixodes scapularis RepID=B7Q825_IXOSC
Length = 344
Score = 75.5 bits (184), Expect = 2e-12
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 12/146 (8%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCD 191
+IANA+RR++++EVPT+A D V + N+S++ DE +AHR+GL+P + M +D +
Sbjct: 68 AIANAIRRILLAEVPTMAPDKVFMYNNTSIVQDEVLAHRIGLVPFNIDPRMFDYREKDSE 127
Query: 192 ACDGDGQCEFCSVEFHLRVKCMTDETL--DVTSKDLYSSDHTV-------VPVDFSPD-- 338
D +VEF L+VKC + D T+ D DH V P+ +
Sbjct: 128 GSPED------TVEFELKVKCTRNPQAPKDATTPDELYKDHVVYTRHLTWTPIGSQAEIF 181
Query: 339 -TSSDSAVNKGIIIVKLRRGQELRLR 413
V II+ KLR GQE+ L+
Sbjct: 182 GNKPPKPVYDDIILAKLRPGQEIDLK 207
[241][TOP]
>UniRef100_Q6C4T2 YALI0E23947p n=1 Tax=Yarrowia lipolytica RepID=Q6C4T2_YARLI
Length = 339
Score = 75.5 bits (184), Expect = 2e-12
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
D S+ANA RR+MI+++PTIA++ V I N+S++ DE +AHRLGL+PL R
Sbjct: 65 DTSLANAFRRIMIADIPTIAVEEVFIHANTSIIQDEVLAHRLGLVPLVINPERINALPRG 124
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD--LYSSDHTVVPVDFSPDTSSDSAV 359
DA + + + S F LR+ + D T K+ +Y+ D T P+ D +
Sbjct: 125 LDASEIEDYYD-DSNTFVLRLNVTCERLADGTMKNAHIYARDITFDPMGNQCQWVKDEGL 183
Query: 360 -------NKGIIIVKLRRGQELRL 410
N I+I KLR Q + L
Sbjct: 184 ENVFKVANPDILIAKLRPNQSINL 207
[242][TOP]
>UniRef100_Q5RJK9 Polymerase (RNA) I polypeptide C n=2 Tax=Rattus norvegicus
RepID=Q5RJK9_RAT
Length = 346
Score = 75.1 bits (183), Expect = 2e-12
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNPG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
+ + + D +++F L+V+C + + S D +Y+ T VP+
Sbjct: 129 EEEGTEID------TLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 183 DVFPEGTVRPVHDDILIAQLRPGQEIDL 210
[243][TOP]
>UniRef100_A1L3C2 Polr1c protein n=2 Tax=Mus musculus RepID=A1L3C2_MOUSE
Length = 347
Score = 75.1 bits (183), Expect = 2e-12
Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 70 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNQG 129
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
+ + + D +++F L+V+C + S D +Y+ T VP+
Sbjct: 130 EEEGTEID------TLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQA 183
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 184 DVFPEGTIRPVHDDILIAQLRPGQEIDL 211
[244][TOP]
>UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2
Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO
Length = 346
Score = 75.1 bits (183), Expect = 2e-12
Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 6/142 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
DA+I NALRR++ISEVPT+AI+ V+I N+ V+ DE +AHRLGLIP + +
Sbjct: 79 DAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDEVLAHRLGLIPFIVDPTALNYRQPN 138
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETL--DVTSKDLYSSDHTVVPVDFSPD----TSS 347
+ D + ++ L VKC T+++L TS +Y+ P+ S +
Sbjct: 139 QEVTDEN------ALRVSLHVKC-TEQSLGPHQTSLPVYAKHIKWEPMSPSQKEAFAANP 191
Query: 348 DSAVNKGIIIVKLRRGQELRLR 413
AV+ I+I KLR GQE+ L+
Sbjct: 192 PRAVHPDILITKLRPGQEIELK 213
[245][TOP]
>UniRef100_B3NAC7 GG23887 n=1 Tax=Drosophila erecta RepID=B3NAC7_DROER
Length = 117
Score = 75.1 bits (183), Expect = 2e-12
Identities = 35/62 (56%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
Frame = +3
Query: 3 TDASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFS 179
T+ S+AN+LRRV I+E PT+AID V++E NS+VL+DEF+AHR+GLIPL S+ + ++++
Sbjct: 26 TELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYT 85
Query: 180 RD 185
RD
Sbjct: 86 RD 87
[246][TOP]
>UniRef100_Q4YX04 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium berghei
RepID=Q4YX04_PLABE
Length = 334
Score = 74.7 bits (182), Expect = 3e-12
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 7/142 (4%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRD 185
+ SIANALRR+MISEVPTIAI+ V I N+ V+ DE + HRLGLIP + A + F +D
Sbjct: 68 NVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPFKFD-ADLINF-KD 125
Query: 186 CDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---LYSSDHTVVPVD----FSPDTS 344
+ C FC F L VKC + + +++ +YS D P++ +++
Sbjct: 126 THEKYNNLNC-FC---FKLHVKCNSINNNKIGNENYQCIYSKDLKWCPLNEEQKIKFESN 181
Query: 345 SDSAVNKGIIIVKLRRGQELRL 410
V+ I+I KL GQE+ L
Sbjct: 182 PPKVVDDNILITKLGNGQEIEL 203
[247][TOP]
>UniRef100_B4NW96 GE11271 n=1 Tax=Drosophila yakuba RepID=B4NW96_DROYA
Length = 333
Score = 74.7 bits (182), Expect = 3e-12
Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 13/147 (8%)
Frame = +3
Query: 12 SIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSRDC 188
+IANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+GL+PL ++ R A R
Sbjct: 63 AIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEEST 122
Query: 189 DACDGDGQCEFCSVEFHLRVKC--MTDETLDVTSKDLYSSDHTV-------VPVDFSPDT 341
+A E ++EF L+VKC D D ++ D +H V +P
Sbjct: 123 EA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI 177
Query: 342 SSDSAVN---KGIIIVKLRRGQELRLR 413
++SAVN I+I +LR G EL LR
Sbjct: 178 YNESAVNCIHDDILIAQLRPGHELDLR 204
[248][TOP]
>UniRef100_Q5JTE4 Polymerase (RNA) I polypeptide C, 30kDa n=1 Tax=Homo sapiens
RepID=Q5JTE4_HUMAN
Length = 314
Score = 74.7 bits (182), Expect = 3e-12
Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D + + D +++F L+V+C + S D +Y+ T +P+
Sbjct: 129 DEEGTEID------TLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 183 DLFPEGTIRPVHDDILIAQLRPGQEIDL 210
[249][TOP]
>UniRef100_O15160-2 Isoform 2 of DNA-directed RNA polymerases I and III subunit RPAC1
n=1 Tax=Homo sapiens RepID=O15160-2
Length = 342
Score = 74.7 bits (182), Expect = 3e-12
Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D + + D +++F L+V+C + S D +Y+ T +P+
Sbjct: 129 DEEGTEID------TLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 183 DLFPEGTIRPVHDDILIAQLRPGQEIDL 210
[250][TOP]
>UniRef100_O15160 DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Homo
sapiens RepID=RPAC1_HUMAN
Length = 346
Score = 74.7 bits (182), Expect = 3e-12
Identities = 49/148 (33%), Positives = 82/148 (55%), Gaps = 13/148 (8%)
Frame = +3
Query: 6 DASIANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMAMRFSR 182
DA+IANA RR++++EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 69 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
Query: 183 DCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKD---------LYSSDHTVVPVDFSP 335
D + + D +++F L+V+C + S D +Y+ T +P+
Sbjct: 129 DEEGTEID------TLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQA 182
Query: 336 DTSSDSA---VNKGIIIVKLRRGQELRL 410
D + V+ I+I +LR GQE+ L
Sbjct: 183 DLFPEGTIRPVHDDILIAQLRPGQEIDL 210