[UP]
[1][TOP]
>UniRef100_Q99367 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99367_SOYBN
Length = 494
Score = 253 bits (645), Expect = 6e-66
Identities = 119/123 (96%), Positives = 122/123 (99%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTP RSPISGTPYHEG+M
Sbjct: 114 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTPYHEGLM 173
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY+LSPNLRLSPT+DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP
Sbjct: 174 SPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 233
Query: 363 TSP 371
TSP
Sbjct: 234 TSP 236
Score = 67.8 bits (164), Expect = 4e-10
Identities = 40/82 (48%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
+PG SP S T P G S SP +SP ++SPTS P YSP+S
Sbjct: 242 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT--SPSYSPTS-PSYSPTS 298
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 299 PSYSPTSPAYSPTSPAYSPTSP 320
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/64 (62%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 291 SPSYSPTSPSY--SPTSPA-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 344
Query: 360 PTSP 371
PTSP
Sbjct: 345 PTSP 348
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSPTSP YS
Sbjct: 319 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYS 372
Query: 360 PTSP 371
PTSP
Sbjct: 373 PTSP 376
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SPGYSP+SP YSPTSP YS
Sbjct: 326 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPGYSPTSPSYSPTSPSYS 379
Query: 360 PTSP 371
PTSP
Sbjct: 380 PTSP 383
Score = 65.9 bits (159), Expect = 1e-09
Identities = 44/87 (50%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+PG SP S SPSY SP+ SPT+ + +SP ++SPTS SP
Sbjct: 256 SPGYSPTSPA---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPSYSPTSPA 307
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 308 YSPTSPAYSPTSPSYSPTSPSYSPTSP 334
Score = 65.9 bits (159), Expect = 1e-09
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS---------- 281
+PG SP S + SPSY SP SP+ + Q + Y +A+SP+S
Sbjct: 361 SPGYSPTSPS---YSPTSPSY--SPT---SPSYNPQSAKYSPSLAYSPSSPRLSPSSPYS 412
Query: 282 --SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSP+SP YSP+SP
Sbjct: 413 PTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSP 444
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 284 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 337
Query: 360 PTSP 371
PTSP
Sbjct: 338 PTSP 341
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS PGYSP+SP YSP+SP YSPTSP Y+
Sbjct: 333 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PGYSPTSPSYSPTSPSYSPTSPSYN 386
Query: 360 PTS 368
P S
Sbjct: 387 PQS 389
[2][TOP]
>UniRef100_Q99366 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99366_SOYBN
Length = 625
Score = 252 bits (644), Expect = 8e-66
Identities = 119/123 (96%), Positives = 121/123 (98%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTP RSPISGTPYHEG+M
Sbjct: 274 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTPYHEGLM 333
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY+LSPNLRLSPT DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP
Sbjct: 334 SPSYLLSPNLRLSPTTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 393
Query: 363 TSP 371
TSP
Sbjct: 394 TSP 396
Score = 67.0 bits (162), Expect = 6e-10
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS-----SPGYS 296
+PG SP S + SPSY SP SP+ + Q + Y +A+SP+S S YS
Sbjct: 521 SPGYSPTSPS---YSPTSPSY--SPT---SPSYNPQSAKYSPSLAYSPSSPRLSPSSPYS 572
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSP+SP
Sbjct: 573 PTSPNYSPTSPSYSPTSPSYSPSSP 597
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/64 (62%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 444 SPSYSPTSPSY--SPTSPA-YSPT--SPAYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 497
Query: 360 PTSP 371
PTSP
Sbjct: 498 PTSP 501
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSPTSP YS
Sbjct: 479 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYS 532
Query: 360 PTSP 371
PTSP
Sbjct: 533 PTSP 536
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SPGYSP+SP YSPTSP YS
Sbjct: 486 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPGYSPTSPSYSPTSPSYS 539
Query: 360 PTSP 371
PTSP
Sbjct: 540 PTSP 543
Score = 65.9 bits (159), Expect = 1e-09
Identities = 44/87 (50%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+PG SP S SPSY SP+ SPT+ + +SP ++SPTS SP
Sbjct: 409 SPGYSPTSPA---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPSYSPTSPA 460
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 461 YSPTSPAYSPTSPAYSPTSPSYSPTSP 487
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 437 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYS 490
Query: 360 PTSP 371
PTSP
Sbjct: 491 PTSP 494
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS PGYSP+SP YSP+SP YSPTSP Y+
Sbjct: 493 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PGYSPTSPSYSPTSPSYSPTSPSYN 546
Query: 360 PTS 368
P S
Sbjct: 547 PQS 549
[3][TOP]
>UniRef100_P18616 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Arabidopsis
thaliana RepID=RPB1_ARATH
Length = 1840
Score = 242 bits (617), Expect = 1e-62
Identities = 111/123 (90%), Positives = 120/123 (97%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAPIGTG+C LYLNDEMLKNAIELQLPSYMDGL+FGMTP RSP+SGTPYHEGMM
Sbjct: 1449 NIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGTPYHEGMM 1508
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SP+Y+LSPN+RLSP +DAQFSPYVGGMAFSP+SSPGYSPSSPGYSP+SPGYSPTSPGYSP
Sbjct: 1509 SPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSP 1568
Query: 363 TSP 371
TSP
Sbjct: 1569 TSP 1571
Score = 69.3 bits (168), Expect = 1e-10
Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISG----TPYHEGMMSPSY-----MLSPNLRLSPTNDAQFSPYVGGMAFSPTSS 284
+PG SP S T G SPSY SP++ SP+N A+ SP +SPTS
Sbjct: 1703 SPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSN-ARLSP---ASPYSPTS- 1757
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSP+SP YSP+SP YSP+SP
Sbjct: 1758 PNYSPTSPSYSPTSPSYSPSSPTYSPSSP 1786
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/64 (62%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1626 SPSYSPTSPSY--SPTSPA-YSPT--SPAYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 1679
Query: 360 PTSP 371
PTSP
Sbjct: 1680 PTSP 1683
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 65.9 bits (159), Expect = 1e-09
Identities = 44/87 (50%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+PG SP S SPSY SP+ SPT+ + +SP ++SPTS SP
Sbjct: 1584 SPGYSPTSPA---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPSYSPTSPS 1635
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1636 YSPTSPAYSPTSPAYSPTSPAYSPTSP 1662
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1619 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYS 1672
Query: 360 PTSP 371
PTSP
Sbjct: 1673 PTSP 1676
Score = 65.1 bits (157), Expect = 2e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SPGYSP+SP YSPTSP Y
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPGYSPTSPSYSPTSPSYG 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 60.1 bits (144), Expect = 7e-08
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS PGYSP+SP YSP+SP Y PTSP Y+
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PGYSPTSPSYSPTSPSYGPTSPSYN 1728
Query: 360 PTS 368
P S
Sbjct: 1729 PQS 1731
[4][TOP]
>UniRef100_UPI0001985649 PREDICTED: similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
binding / DNA-directed RNA polymerase n=1 Tax=Vitis
vinifera RepID=UPI0001985649
Length = 1848
Score = 240 bits (613), Expect = 3e-62
Identities = 111/123 (90%), Positives = 120/123 (97%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAPIGTG+CALYLND+ML++AIELQLPSYM+GLDFGMTP RSPI+GTPYH+GMM
Sbjct: 1447 NIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTPYHDGMM 1506
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SP+Y+LSPNLRLSP DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP
Sbjct: 1507 SPNYLLSPNLRLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 1566
Query: 363 TSP 371
TSP
Sbjct: 1567 TSP 1569
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/82 (48%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
+PG SP S T P G S SP +SP ++SPTS P YSP+S
Sbjct: 1575 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT--SPSYSPTS-PSYSPTS 1631
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 1632 PSYSPTSPSYSPTSPVYSPTSP 1653
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSPTSP YS
Sbjct: 1673 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYS 1726
Query: 360 PTSP 371
PTSP
Sbjct: 1727 PTSP 1730
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SPGYSP+SP YSPTSP YS
Sbjct: 1680 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPGYSPTSPSYSPTSPSYS 1733
Query: 360 PTSP 371
PTSP
Sbjct: 1734 PTSP 1737
Score = 65.9 bits (159), Expect = 1e-09
Identities = 36/63 (57%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1638 SPSY--SPTSPVYSPTSPSYSPT--SPAYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYSP 1692
Query: 363 TSP 371
TSP
Sbjct: 1693 TSP 1695
Score = 65.5 bits (158), Expect = 2e-09
Identities = 38/63 (60%), Positives = 43/63 (68%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1652 SPSY--------SPTSPA-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Query: 363 TSP 371
TSP
Sbjct: 1700 TSP 1702
Score = 65.1 bits (157), Expect = 2e-09
Identities = 41/92 (44%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS---------- 281
+PG SP S + SPSY SP SP+ + + Y +A+SP+S
Sbjct: 1715 SPGYSPTSPS---YSPTSPSY--SPT---SPSYNPSSAKYSPSLAYSPSSPRLSPSSPYS 1766
Query: 282 --SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSP SP YSPTSP
Sbjct: 1767 PTSPNYSPTSPSYSPTSPSYSPASPTYSPTSP 1798
Score = 63.9 bits (154), Expect = 5e-09
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1624 SPSYSPTSPSY--SPTSPS-YSPT--SPVYSPTS-PSYSPTSPAYSPTSPAYSPTSPSYS 1677
Query: 360 PTSP 371
PTSP
Sbjct: 1678 PTSP 1681
Score = 63.9 bits (154), Expect = 5e-09
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1631 SPSYSPTSPSY--SPTSPV-YSPT--SPSYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYS 1684
Query: 360 PTSP 371
PTSP
Sbjct: 1685 PTSP 1688
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS PGYSP+SP YSP+SP YSPTSP Y+
Sbjct: 1687 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PGYSPTSPSYSPTSPSYSPTSPSYN 1740
Query: 360 PTS 368
P+S
Sbjct: 1741 PSS 1743
Score = 57.4 bits (137), Expect = 5e-07
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +3
Query: 144 SPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSP 320
SP S T + SPSY SP+ + + SPY G+ SP YSPSSP YSP
Sbjct: 1763 SPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPTSPYNSGV------SPDYSPSSPQYSP 1816
Query: 321 SSPGYSPTSPGYSPTS 368
S+ GYSP++PGYSP+S
Sbjct: 1817 SA-GYSPSAPGYSPSS 1831
[5][TOP]
>UniRef100_A7NVN7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NVN7_VITVI
Length = 1010
Score = 240 bits (613), Expect = 3e-62
Identities = 111/123 (90%), Positives = 120/123 (97%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAPIGTG+CALYLND+ML++AIELQLPSYM+GLDFGMTP RSPI+GTPYH+GMM
Sbjct: 684 NIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTPYHDGMM 743
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SP+Y+LSPNLRLSP DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP
Sbjct: 744 SPNYLLSPNLRLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 803
Query: 363 TSP 371
TSP
Sbjct: 804 TSP 806
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/82 (48%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
+PG SP S T P G S SP +SP ++SPTS P YSP+S
Sbjct: 812 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT--SPSYSPTS-PSYSPTS 868
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 869 PSYSPTSPSYSPTSPVYSPTSP 890
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSPTSP YS
Sbjct: 910 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYS 963
Query: 360 PTSP 371
PTSP
Sbjct: 964 PTSP 967
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SPGYSP+SP YSPTSP YS
Sbjct: 917 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPGYSPTSPSYSPTSPSYS 970
Query: 360 PTSP 371
PTSP
Sbjct: 971 PTSP 974
Score = 65.9 bits (159), Expect = 1e-09
Identities = 36/63 (57%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 875 SPSY--SPTSPVYSPTSPSYSPT--SPAYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYSP 929
Query: 363 TSP 371
TSP
Sbjct: 930 TSP 932
Score = 65.5 bits (158), Expect = 2e-09
Identities = 38/63 (60%), Positives = 43/63 (68%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 889 SPSY--------SPTSPA-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSP 936
Query: 363 TSP 371
TSP
Sbjct: 937 TSP 939
Score = 63.9 bits (154), Expect = 5e-09
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 861 SPSYSPTSPSY--SPTSPS-YSPT--SPVYSPTS-PSYSPTSPAYSPTSPAYSPTSPSYS 914
Query: 360 PTSP 371
PTSP
Sbjct: 915 PTSP 918
Score = 63.9 bits (154), Expect = 5e-09
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 868 SPSYSPTSPSY--SPTSPV-YSPT--SPSYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYS 921
Query: 360 PTSP 371
PTSP
Sbjct: 922 PTSP 925
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS PGYSP+SP YSP+SP YSPTSP Y+
Sbjct: 924 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PGYSPTSPSYSPTSPSYSPTSPSYN 977
Query: 360 PTS 368
P+S
Sbjct: 978 PSS 980
Score = 54.3 bits (129), Expect = 4e-06
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP G +SPTS P YSP+SP YSP+SP Y+P+S YS
Sbjct: 931 SPSYSPTSPSY--SPTSPA-YSPTSPG--YSPTS-PSYSPTSPSYSPTSPSYNPSSAKYS 984
Query: 360 PT 365
P+
Sbjct: 985 PS 986
[6][TOP]
>UniRef100_B9SXC0 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9SXC0_RICCO
Length = 1855
Score = 238 bits (606), Expect = 2e-61
Identities = 111/123 (90%), Positives = 117/123 (95%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAPIGTG+CALYLND+MLKNAIELQLPSYMDGLDFGMTP RSP+S TPYH+GMM
Sbjct: 1447 NIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVSVTPYHDGMM 1506
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY+LSP+LRLSPT DAQFSPYV GM FSPT SPGYSPSSPGYSPSSPGYSPTSPGYSP
Sbjct: 1507 SPSYLLSPSLRLSPTTDAQFSPYVSGMPFSPTLSPGYSPSSPGYSPSSPGYSPTSPGYSP 1566
Query: 363 TSP 371
TSP
Sbjct: 1567 TSP 1569
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/82 (48%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
+PG SP S T P G S SP +SP ++SPTS P YSP+S
Sbjct: 1575 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT--SPSYSPTS-PSYSPTS 1631
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 1632 PSYSPTSPSYSPTSPVYSPTSP 1653
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSPTSP YS
Sbjct: 1666 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYS 1719
Query: 360 PTSP 371
PTSP
Sbjct: 1720 PTSP 1723
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SPGYSP+SP YSPTSP YS
Sbjct: 1673 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPGYSPTSPSYSPTSPSYS 1726
Query: 360 PTSP 371
PTSP
Sbjct: 1727 PTSP 1730
Score = 66.2 bits (160), Expect = 1e-09
Identities = 40/64 (62%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYMLSPNLRL-SPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1638 SPSY--SPTSPVYSPTSPA-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 360 PTSP 371
PTSP
Sbjct: 1692 PTSP 1695
Score = 65.9 bits (159), Expect = 1e-09
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS---------- 281
+PG SP S + SPSY SP SP+ + Q + Y +A+SP+S
Sbjct: 1708 SPGYSPTSPS---YSPTSPSY--SPT---SPSYNPQSAKYSPSLAYSPSSPRLSPSSPYS 1759
Query: 282 --SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSP+SP YSP+SP
Sbjct: 1760 PTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSP 1791
Score = 65.1 bits (157), Expect = 2e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1631 SPSYSPTSPSY--SPTSPV-YSPT--SPAYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 360 PTSP 371
PTSP
Sbjct: 1685 PTSP 1688
Score = 63.9 bits (154), Expect = 5e-09
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1624 SPSYSPTSPSY--SPTSPS-YSPT--SPVYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYS 1677
Query: 360 PTSP 371
PTSP
Sbjct: 1678 PTSP 1681
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS PGYSP+SP YSP+SP YSPTSP Y+
Sbjct: 1680 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PGYSPTSPSYSPTSPSYSPTSPSYN 1733
Query: 360 PTS 368
P S
Sbjct: 1734 PQS 1736
[7][TOP]
>UniRef100_Q4QZ03 DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum tuberosum
RepID=Q4QZ03_SOLTU
Length = 361
Score = 232 bits (591), Expect = 1e-59
Identities = 108/124 (87%), Positives = 118/124 (95%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDG-LDFGMTPGRSPISGTPYHEGM 179
NIMLGQLAPIGTG C+LYLN+EMLK AIE+ LPSYM+G L+FGMTPGRSPISGTPYH+GM
Sbjct: 26 NIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTPYHDGM 85
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
MSP+Y+LSPN+R+SP DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS
Sbjct: 86 MSPNYLLSPNMRMSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 145
Query: 360 PTSP 371
PTSP
Sbjct: 146 PTSP 149
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/82 (48%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
+PG SP S T P G S SP +SP ++SPTS P YSP+S
Sbjct: 155 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT--SSSYSPTS-PSYSPTS 211
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 212 PIYSPTSPAYSPTSPAYSPTSP 233
Score = 65.1 bits (157), Expect = 2e-09
Identities = 43/86 (50%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS-----SPGY 293
+PG SP S + SPSY SP+ S A++SP +A+SPTS S Y
Sbjct: 281 SPGYSPTSPS---YSPTSPSYSPTSPSYNPS----ARYSP---SLAYSPTSPKLSPSSPY 330
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPSSP YSP+SP YSPTSP YSP+SP
Sbjct: 331 SPSSPSYSPTSPSYSPTSPSYSPSSP 356
Score = 64.7 bits (156), Expect = 3e-09
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSS------PGY 293
+P SP S P + + PSY SP L +SP ++SPTS P Y
Sbjct: 225 SPAYSPTS--PAYSPTL-PSY--SPTLPSYSPTSPSYSPT--SPSYSPTSPSYSPTFPAY 277
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SPGYSP+SP YSPTSP YSPTSP
Sbjct: 278 SPTSPGYSPTSPSYSPTSPSYSPTSP 303
Score = 61.6 bits (148), Expect = 3e-08
Identities = 42/87 (48%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+PG SP S SPSY SP+ SPT+ + +SP ++SPTS SP
Sbjct: 169 SPGYSPTSPA---YSPTSPSYSPTSPSY--SPTSSS-YSPT--SPSYSPTSPIYSPTSPA 220
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSPT P YSPT P
Sbjct: 221 YSPTSPAYSPTSPAYSPTLPSYSPTLP 247
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/91 (47%), Positives = 53/91 (58%)
Frame = +3
Query: 96 LPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSP 275
LPSY L P SP S + SPSY SPT+ + +SP A+SP
Sbjct: 239 LPSYSPTL-----PSYSPTSPS---YSPTSPSY--------SPTSPS-YSPTFP--AYSP 279
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS 368
TS PGYSP+SP YSP+SP YSPTSP Y+P++
Sbjct: 280 TS-PGYSPTSPSYSPTSPSYSPTSPSYNPSA 309
Score = 61.2 bits (147), Expect = 3e-08
Identities = 37/78 (47%), Positives = 48/78 (61%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P SP S + +PS SP+L SPT+ + SP +SP SSP YSP+SP
Sbjct: 295 SPSYSPTSPS------YNPSARYSPSLAYSPTSP-KLSP---SSPYSP-SSPSYSPTSPS 343
Query: 312 YSPSSPGYSPTSPGYSPT 365
YSP+SP YSP+SP YSP+
Sbjct: 344 YSPTSPSYSPSSPTYSPS 361
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/80 (48%), Positives = 46/80 (57%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P SP S + SPSY SPT+ +SP A+SPTS P YSP+SP
Sbjct: 190 SPSYSPTSSS---YSPTSPSY--------SPTSPI-YSPT--SPAYSPTS-PAYSPTSPA 234
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+ P YSPT P YSPTSP
Sbjct: 235 YSPTLPSYSPTLPSYSPTSP 254
[8][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
RepID=Q99368_SOYBN
Length = 977
Score = 216 bits (550), Expect = 6e-55
Identities = 106/124 (85%), Positives = 113/124 (91%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEG-M 179
NI+LGQLAPIGTG+CALYLND MLKNAIELQLPSY DGLDFG+ G TPYHEG M
Sbjct: 639 NIILGQLAPIGTGQCALYLNDGMLKNAIELQLPSYTDGLDFGIMSG-----ATPYHEGTM 693
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
MSPSY+LSPNLRLSP++DAQFSPYVGGMAFSP+SSPGYSPSSPGYSPSSPGYSPTSPGYS
Sbjct: 694 MSPSYLLSPNLRLSPSSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSPTSPGYS 753
Query: 360 PTSP 371
PTSP
Sbjct: 754 PTSP 757
Score = 65.9 bits (159), Expect = 1e-09
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SPSY SP SP+ + Q + Y +A+SP+S SP YSP+SP YSP+SP YSP+
Sbjct: 868 SPSY--SPT---SPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTSPSYSPS 922
Query: 345 SPGYSPTSP 371
SP YSP+SP
Sbjct: 923 SPTYSPSSP 931
Score = 64.7 bits (156), Expect = 3e-09
Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SP+Y S + SPT+ + +SP A+SPTS SP YSP+SP YSP+SP YSPT
Sbjct: 798 SPAYS-STSPAYSPTSPS-YSPT--SPAYSPTSPSYSLTSPSYSPTSPSYSPTSPSYSPT 853
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 854 SPAYSPTSP 862
Score = 64.7 bits (156), Expect = 3e-09
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP+ L+ + + SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 819 SPAYSPTSPSYSLTSPSYSPTSP-----SYSPTS-PSYSPTSPAYSPTSPSYSPTSPSYS 872
Query: 360 PTSP 371
PTSP
Sbjct: 873 PTSP 876
Score = 63.2 bits (152), Expect = 9e-09
Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPY-----VGGMAFSPTSSPGY 293
+P SP S P + SP+Y SP+ SPT+ A +SP + ++SPTS P Y
Sbjct: 791 SPAYSPTS--PAYSST-SPAYSPTSPSY--SPTSPA-YSPTSPSYSLTSPSYSPTS-PSY 843
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 844 SPTSPSYSPTSPAYSPTSPSYSPTSP 869
Score = 60.1 bits (144), Expect = 7e-08
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYML-SPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY L SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 826 SPSYSLTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYN 879
Query: 360 PTS 368
P S
Sbjct: 880 PQS 882
Score = 60.1 bits (144), Expect = 7e-08
Identities = 38/64 (59%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPS SP+ RLSPT+ +SP ++SPTS P YSPSSP YSPSSP S SP YS
Sbjct: 886 SPSLAYSPSSPRLSPTSP-NYSPT--SPSYSPTS-PSYSPSSPTYSPSSPYNSGVSPDYS 941
Query: 360 PTSP 371
PTSP
Sbjct: 942 PTSP 945
Score = 55.1 bits (131), Expect = 2e-06
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP+ + + + SP + + S YSPSSP SP+SP YSPTSP YS
Sbjct: 854 SPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYS 913
Query: 360 PTSP 371
PTSP
Sbjct: 914 PTSP 917
[9][TOP]
>UniRef100_B9FZ51 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=B9FZ51_ORYSJ
Length = 1526
Score = 215 bits (548), Expect = 1e-54
Identities = 104/137 (75%), Positives = 112/137 (81%), Gaps = 14/137 (10%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAPIGTG CALYLND+ML+ AIELQLPSY++GLDFGMTP RSPISGTPYHEGMM
Sbjct: 1118 NIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMM 1177
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS--------------PGYSP 320
SPSY+LSPN+R SP DAQFSPYVGGMAFSP SPGY+PSS PGYSP
Sbjct: 1178 SPSYLLSPNIRASPITDAQFSPYVGGMAFSPVPSPGYTPSSGGGYSPSSPVYSPGPGYSP 1237
Query: 321 SSPGYSPTSPGYSPTSP 371
+SP YSP SP YSPTSP
Sbjct: 1238 TSPSYSPASPSYSPTSP 1254
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSPGYS
Sbjct: 1344 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPGYS 1397
Query: 360 PTSP 371
PTSP
Sbjct: 1398 PTSP 1401
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSPTSP YS
Sbjct: 1351 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYS 1404
Query: 360 PTSP 371
PTSP
Sbjct: 1405 PTSP 1408
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SPGYSP+SP YSPTSP YS
Sbjct: 1358 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPGYSPTSPSYSPTSPNYS 1411
Query: 360 PTSP 371
PTSP
Sbjct: 1412 PTSP 1415
Score = 66.2 bits (160), Expect = 1e-09
Identities = 40/64 (62%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYMLSPNLRL-SPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1309 SPSY--SPTSPVYSPTSPA-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1362
Query: 360 PTSP 371
PTSP
Sbjct: 1363 PTSP 1366
Score = 65.1 bits (157), Expect = 2e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1302 SPSYSPTSPSY--SPTSPV-YSPT--SPAYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 1355
Query: 360 PTSP 371
PTSP
Sbjct: 1356 PTSP 1359
Score = 64.3 bits (155), Expect = 4e-09
Identities = 44/98 (44%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-----LSPTNDA------QFSPYVGGMAFSP 275
TPG S T SPSY SP+ SPT+ + +SP ++SP
Sbjct: 1257 TPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSP 1314
Query: 276 TS------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1315 TSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1352
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS PGYSP+SP YSP+SP YSPTSP Y+
Sbjct: 1365 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PGYSPTSPSYSPTSPNYSPTSPSYN 1418
Query: 360 PTS 368
P+S
Sbjct: 1419 PSS 1421
Score = 60.8 bits (146), Expect = 4e-08
Identities = 40/91 (43%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-LSPTNDAQFSPYVGGMAFSPTS-------- 281
+PG SP S PSY SPN SP+ + + Y A+SP+S
Sbjct: 1393 SPGYSPTS----------PSYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQ 1442
Query: 282 -SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YS SP YSPTSP
Sbjct: 1443 TSPNYSPTSPTYSPTSPSYSQPSPSYSPTSP 1473
Score = 55.8 bits (133), Expect = 1e-06
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS--------SP 287
+P SP S T + SP+Y SPT+ + P ++SPTS SP
Sbjct: 1434 SPRLSPYSQTSPNYSPTSPTY--------SPTSPSYSQP---SPSYSPTSPYTTSGGPSP 1482
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTS 368
YSP+SP YSPS YSPT+PGYSP+S
Sbjct: 1483 DYSPTSPNYSPSG-SYSPTAPGYSPSS 1508
[10][TOP]
>UniRef100_C5YGY9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5YGY9_SORBI
Length = 1857
Score = 204 bits (520), Expect = 2e-51
Identities = 104/131 (79%), Positives = 110/131 (83%), Gaps = 8/131 (6%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAPIGTG CALYLND+ML+ AIELQLPSY++GLDFGMTP RSPISGTPYHEGMM
Sbjct: 1446 NIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMM 1505
Query: 183 SPSYMLSPNLRLSPTN-DAQFSPYVGGMAFSPTSSP-GYSPSSPGYSPSSP------GYS 338
SPSY+LSPN+R SP N DA FSPYVG MAFSP SP GYSPSS GYSPSSP GYS
Sbjct: 1506 SPSYLLSPNIRASPINTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFTPEKGYS 1565
Query: 339 PTSPGYSPTSP 371
P SP YSP SP
Sbjct: 1566 PLSPSYSPASP 1576
Score = 67.0 bits (162), Expect = 6e-10
Identities = 40/80 (50%), Positives = 49/80 (61%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
TPG S T + SP+Y SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1586 TPGSPTYSPTSPNYSPTSPTY--------SPTSPS-YSPT--SPSYSPTS-PSYSPTSPS 1633
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1634 YSPTSPSYSPTSPSYSPTSP 1653
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSPGYS
Sbjct: 1680 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPGYS 1733
Query: 360 PTSP 371
PTSP
Sbjct: 1734 PTSP 1737
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSPTSP YS
Sbjct: 1687 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYS 1740
Query: 360 PTSP 371
PTSP
Sbjct: 1741 PTSP 1744
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SPGYSP+SP YSPTSP YS
Sbjct: 1694 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPGYSPTSPSYSPTSPSYS 1747
Query: 360 PTSP 371
PTSP
Sbjct: 1748 PTSP 1751
Score = 66.2 bits (160), Expect = 1e-09
Identities = 40/64 (62%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYMLSPNLRL-SPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1645 SPSY--SPTSPVYSPTSPA-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 360 PTSP 371
PTSP
Sbjct: 1699 PTSP 1702
Score = 65.1 bits (157), Expect = 2e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1638 SPSYSPTSPSY--SPTSPV-YSPT--SPAYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 360 PTSP 371
PTSP
Sbjct: 1692 PTSP 1695
Score = 63.9 bits (154), Expect = 5e-09
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1631 SPSYSPTSPSY--SPTSPS-YSPT--SPVYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYS 1684
Query: 360 PTSP 371
PTSP
Sbjct: 1685 PTSP 1688
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS PGYSP+SP YSP+SP YSPTSP Y+
Sbjct: 1701 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PGYSPTSPSYSPTSPSYSPTSPSYN 1754
Query: 360 PTS 368
P+S
Sbjct: 1755 PSS 1757
Score = 61.2 bits (147), Expect = 3e-08
Identities = 40/89 (44%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS---------S 284
+PG SP S + SPSY SP SP+ + + Y A+SP+S S
Sbjct: 1729 SPGYSPTSPS---YSPTSPSY--SPT---SPSYNPSSAKYSPSHAYSPSSPRMTPYSQTS 1780
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSP+SP YS SP YSPTSP
Sbjct: 1781 PSYSPTSPTYSPTSPSYSQPSPSYSPTSP 1809
Score = 55.1 bits (131), Expect = 2e-06
Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Frame = +3
Query: 159 TPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS--------SPGYSPSSPG 311
TPY + SPSY SP SPT+ + P ++SPTS SP YSP+SP
Sbjct: 1774 TPYSQ--TSPSYSPTSPTY--SPTSPSYSQP---SPSYSPTSPFNTSGGPSPDYSPTSPN 1826
Query: 312 YSPSSPGYSPTSPGYSPTS 368
YSPS YSPT+PGYSP+S
Sbjct: 1827 YSPSG-SYSPTAPGYSPSS 1844
[11][TOP]
>UniRef100_A9TK89 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9TK89_PHYPA
Length = 1646
Score = 196 bits (499), Expect = 5e-49
Identities = 95/123 (77%), Positives = 110/123 (89%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAPIGTG+ L+LN+ ML++AIELQLPS+ +G D+GMTP RSP+ GTP++EGMM
Sbjct: 1434 NIMLGQLAPIGTGDFGLHLNENMLQHAIELQLPSF-EGTDYGMTPSRSPMIGTPHNEGMM 1492
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY+LSP+LR SP ++AQFSPYVG M FSP SSPGYSPSSPGYSP SPGYSPTSPGYSP
Sbjct: 1493 SPSYLLSPSLRASPLSEAQFSPYVGSMPFSP-SSPGYSPSSPGYSPLSPGYSPTSPGYSP 1551
Query: 363 TSP 371
TSP
Sbjct: 1552 TSP 1554
Score = 54.7 bits (130), Expect = 3e-06
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+PG SP S + P G SP Y SP+ + + A SP ++SPTS P YS
Sbjct: 1560 SPGYSPTSPSYSPTSPGYSPTSPGYSPTSPSYSPTSPSYAPTSP-----SYSPTS-PSYS 1613
Query: 297 PSSPGYSPSSPGYSPTSPGY 356
P+SP YSP+SP YSPTSP Y
Sbjct: 1614 PTSPSYSPTSPSYSPTSPAY 1633
[12][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U396_PHYPA
Length = 1742
Score = 194 bits (493), Expect = 3e-48
Identities = 93/123 (75%), Positives = 110/123 (89%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAPIGTG+ L+LN++ML++AIELQLPS+ + D+GMTP R+P+ GTP+++GMM
Sbjct: 1449 NIMLGQLAPIGTGDFGLHLNEDMLQHAIELQLPSF-EATDYGMTPSRTPMIGTPHNDGMM 1507
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY+LSP+LR SP +DAQFSPYVG M FSP SSPGYSPSSPGYSP SPGYSPTSPGYSP
Sbjct: 1508 SPSYLLSPSLRASPLSDAQFSPYVGNMPFSP-SSPGYSPSSPGYSPLSPGYSPTSPGYSP 1566
Query: 363 TSP 371
TSP
Sbjct: 1567 TSP 1569
Score = 67.4 bits (163), Expect = 5e-10
Identities = 40/70 (57%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSP 341
SPSY SP + + A SP A+SPTS SPGYSP+SP YSPSSP YSP
Sbjct: 1652 SPSYSPTSPAYSPTSPSYAPTSP-----AYSPTSPSYSPTSPGYSPTSPSYSPSSPSYSP 1706
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1707 TSPSYSPTSP 1716
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1596 SPGYSPTSPS---YSPTSPSYAPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1646
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1647 SYSPTSPSYSPTSPAYSPTSP 1667
Score = 66.2 bits (160), Expect = 1e-09
Identities = 39/82 (47%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
+PG SP S + P G S SP +SP ++SPTS P YSP+S
Sbjct: 1582 SPGYSPTSPSYSPTSPGYSPTSPSYSPTSPSYAPTSPSYSPT--SPSYSPTS-PSYSPTS 1638
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 1639 PSYSPTSPSYSPTSPSYSPTSP 1660
Score = 65.9 bits (159), Expect = 1e-09
Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP SPT+ + +SP G +SPTS P YSPSSP YSP+SP YSPTSP YS
Sbjct: 1666 SPSYAPTSP--AYSPTSPS-YSPTSPG--YSPTS-PSYSPSSPSYSPTSPSYSPTSPAYS 1719
Query: 360 PTSP 371
PTSP
Sbjct: 1720 PTSP 1723
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSP+SP YS
Sbjct: 1680 SPSYSPTSPGY--SPTSPS-YSP--SSPSYSPTS-PSYSPTSPAYSPTSPRYSPSSPSYS 1733
Query: 360 PTSP 371
PTSP
Sbjct: 1734 PTSP 1737
[13][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
Length = 2085
Score = 181 bits (460), Expect = 2e-44
Identities = 99/140 (70%), Positives = 108/140 (77%), Gaps = 17/140 (12%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFG-MTPGRSPISGTPYHEGM 179
NIMLGQLAPIGTG C LYLND+MLK AIELQLPSY++GLDFG MT SPISGTPYH+GM
Sbjct: 1448 NIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISGTPYHQGM 1507
Query: 180 MSPSYMLSPNLRLSPT-NDAQFSPYVGGMAFSPTSSPG-YSPSS-PGYSPSSP------- 329
MSPSY+LSP++R SPT DAQFSPYVGGMAFSP SSPG Y+PSS GYSPS P
Sbjct: 1508 MSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTPGPG 1567
Query: 330 ------GYSPTSPGYSPTSP 371
Y+P SP YSP SP
Sbjct: 1568 SFTSSSPYNPVSPFYSPASP 1587
Score = 73.2 bits (178), Expect = 9e-12
Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P +P S + Y SPSY SP+ SPT+ + +SP +SPTS P YSP+SP
Sbjct: 1657 SPSYNPTSPS-YSYSPTSPSYSPTSPSYSYSPTSPS-YSPTSPSYNYSPTS-PSYSPTSP 1713
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1714 SYSPTSPSYSPTSPSYSPTSP 1734
Score = 68.9 bits (167), Expect = 2e-10
Identities = 44/93 (47%), Positives = 54/93 (58%), Gaps = 13/93 (13%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDA------QFSPYVGGMAFSPTS--- 281
+P SP S + Y SPSY SP+ SPT+ + +SP ++SPTS
Sbjct: 1673 SPSYSPTSPS-YSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPT--SPSYSPTSPSY 1729
Query: 282 ---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+S YSP+SP YSPTSPGYSPTSP
Sbjct: 1730 SPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSP 1762
Score = 65.9 bits (159), Expect = 1e-09
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTSSPGYSPS 302
+P SP S + Y+ SPSY SP+ + + + SP ++SPTSS YSP+
Sbjct: 1689 SPSYSPTSPS-YNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSS-AYSPT 1746
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPGYSPTSP YSP+SP
Sbjct: 1747 SPAYSPTSPGYSPTSPSYSPSSP 1769
Score = 62.0 bits (149), Expect = 2e-08
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Frame = +3
Query: 99 PSYMD-GLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFS 272
PSY + +P S T SPSY SP+ SPT+ + +SP A+S
Sbjct: 1690 PSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SSAYS 1744
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS 368
PTS P YSP+SPGYSP+SP YSP+SP Y+P+S
Sbjct: 1745 PTS-PAYSPTSPGYSPTSPSYSPSSPSYNPSS 1775
Score = 57.0 bits (136), Expect = 6e-07
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Frame = +3
Query: 129 MTPGRSPISGTPYHEGMMSPSYMLS--PNLRLSPTNDAQFSPYV-GGMAFSPTS------ 281
++P SP S P + SPSY+ + P+ SP A Y +SPTS
Sbjct: 1578 VSPFYSPAS--PLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPT 1635
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+P+S YSPTSP Y+PTSP
Sbjct: 1636 SPVYSPTSPVYNPTSSAYSPTSPSYNPTSP 1665
Score = 56.6 bits (135), Expect = 8e-07
Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP A+SPTS PGYSP+SP YSPSSP Y+P+S Y+
Sbjct: 1726 SPSYSPTSPSY--SPTSSA-YSPT--SPAYSPTS-PGYSPTSPSYSPSSPSYNPSSVKYT 1779
Query: 360 PT 365
P+
Sbjct: 1780 PS 1781
Score = 53.1 bits (126), Expect = 9e-06
Identities = 34/78 (43%), Positives = 42/78 (53%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+PG SP S PSY SP+ SP+ + Y A+SP+S YS +SP
Sbjct: 1754 SPGYSPTS----------PSY--SPS---SPSYNPSSVKYTPSHAYSPSSPNYYSSTSPT 1798
Query: 312 YSPSSPGYSPTSPGYSPT 365
YSP+SP YS SP YSPT
Sbjct: 1799 YSPTSPSYSQPSPSYSPT 1816
[14][TOP]
>UniRef100_Q5WMZ9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q5WMZ9_ORYSJ
Length = 1741
Score = 181 bits (460), Expect = 2e-44
Identities = 99/140 (70%), Positives = 108/140 (77%), Gaps = 17/140 (12%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFG-MTPGRSPISGTPYHEGM 179
NIMLGQLAPIGTG C LYLND+MLK AIELQLPSY++GLDFG MT SPISGTPYH+GM
Sbjct: 1395 NIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISGTPYHQGM 1454
Query: 180 MSPSYMLSPNLRLSPT-NDAQFSPYVGGMAFSPTSSPG-YSPSS-PGYSPSSP------- 329
MSPSY+LSP++R SPT DAQFSPYVGGMAFSP SSPG Y+PSS GYSPS P
Sbjct: 1455 MSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTPGPG 1514
Query: 330 ------GYSPTSPGYSPTSP 371
Y+P SP YSP SP
Sbjct: 1515 SFTSSSPYNPVSPFYSPASP 1534
Score = 73.2 bits (178), Expect = 9e-12
Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P +P S + Y SPSY SP+ SPT+ + +SP +SPTS P YSP+SP
Sbjct: 1604 SPSYNPTSPS-YSYSPTSPSYSPTSPSYSYSPTSPS-YSPTSPSYNYSPTS-PSYSPTSP 1660
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSP 1681
Score = 68.9 bits (167), Expect = 2e-10
Identities = 44/93 (47%), Positives = 54/93 (58%), Gaps = 13/93 (13%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDA------QFSPYVGGMAFSPTS--- 281
+P SP S + Y SPSY SP+ SPT+ + +SP ++SPTS
Sbjct: 1620 SPSYSPTSPS-YSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPT--SPSYSPTSPSY 1676
Query: 282 ---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+S YSP+SP YSPTSPGYSPTSP
Sbjct: 1677 SPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSP 1709
Score = 65.9 bits (159), Expect = 1e-09
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTSSPGYSPS 302
+P SP S + Y+ SPSY SP+ + + + SP ++SPTSS YSP+
Sbjct: 1636 SPSYSPTSPS-YNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSS-AYSPT 1693
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPGYSPTSP YSP+SP
Sbjct: 1694 SPAYSPTSPGYSPTSPSYSPSSP 1716
Score = 62.0 bits (149), Expect = 2e-08
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Frame = +3
Query: 99 PSYMD-GLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFS 272
PSY + +P S T SPSY SP+ SPT+ + +SP A+S
Sbjct: 1637 PSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SSAYS 1691
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS 368
PTS P YSP+SPGYSP+SP YSP+SP Y+P+S
Sbjct: 1692 PTS-PAYSPTSPGYSPTSPSYSPSSPSYNPSS 1722
Score = 57.0 bits (136), Expect = 6e-07
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Frame = +3
Query: 129 MTPGRSPISGTPYHEGMMSPSYMLS--PNLRLSPTNDAQFSPYV-GGMAFSPTS------ 281
++P SP S P + SPSY+ + P+ SP A Y +SPTS
Sbjct: 1525 VSPFYSPAS--PLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPT 1582
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+P+S YSPTSP Y+PTSP
Sbjct: 1583 SPVYSPTSPVYNPTSSAYSPTSPSYNPTSP 1612
Score = 56.6 bits (135), Expect = 8e-07
Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP A+SPTS PGYSP+SP YSPSSP Y+P+S Y+
Sbjct: 1673 SPSYSPTSPSY--SPTSSA-YSPT--SPAYSPTS-PGYSPTSPSYSPSSPSYNPSSVKYT 1726
Query: 360 PT 365
P+
Sbjct: 1727 PS 1728
[15][TOP]
>UniRef100_Q0DKN9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q0DKN9_ORYSJ
Length = 1834
Score = 181 bits (460), Expect = 2e-44
Identities = 99/140 (70%), Positives = 108/140 (77%), Gaps = 17/140 (12%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFG-MTPGRSPISGTPYHEGM 179
NIMLGQLAPIGTG C LYLND+MLK AIELQLPSY++GLDFG MT SPISGTPYH+GM
Sbjct: 1448 NIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISGTPYHQGM 1507
Query: 180 MSPSYMLSPNLRLSPT-NDAQFSPYVGGMAFSPTSSPG-YSPSS-PGYSPSSP------- 329
MSPSY+LSP++R SPT DAQFSPYVGGMAFSP SSPG Y+PSS GYSPS P
Sbjct: 1508 MSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTPGPG 1567
Query: 330 ------GYSPTSPGYSPTSP 371
Y+P SP YSP SP
Sbjct: 1568 SFTSSSPYNPVSPFYSPASP 1587
Score = 73.2 bits (178), Expect = 9e-12
Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P +P S + Y SPSY SP+ SPT+ + +SP +SPTS P YSP+SP
Sbjct: 1657 SPSYNPTSPS-YSYSPTSPSYSPTSPSYSYSPTSPS-YSPTSPSYNYSPTS-PSYSPTSP 1713
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1714 SYSPTSPSYSPTSPSYSPTSP 1734
Score = 68.9 bits (167), Expect = 2e-10
Identities = 44/93 (47%), Positives = 54/93 (58%), Gaps = 13/93 (13%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDA------QFSPYVGGMAFSPTS--- 281
+P SP S + Y SPSY SP+ SPT+ + +SP ++SPTS
Sbjct: 1673 SPSYSPTSPS-YSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPT--SPSYSPTSPSY 1729
Query: 282 ---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+S YSP+SP YSPTSPGYSPTSP
Sbjct: 1730 SPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSP 1762
Score = 65.9 bits (159), Expect = 1e-09
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTSSPGYSPS 302
+P SP S + Y+ SPSY SP+ + + + SP ++SPTSS YSP+
Sbjct: 1689 SPSYSPTSPS-YNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSS-AYSPT 1746
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPGYSPTSP YSP+SP
Sbjct: 1747 SPAYSPTSPGYSPTSPSYSPSSP 1769
Score = 62.0 bits (149), Expect = 2e-08
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Frame = +3
Query: 99 PSYMD-GLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFS 272
PSY + +P S T SPSY SP+ SPT+ + +SP A+S
Sbjct: 1690 PSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SSAYS 1744
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS 368
PTS P YSP+SPGYSP+SP YSP+SP Y+P+S
Sbjct: 1745 PTS-PAYSPTSPGYSPTSPSYSPSSPSYNPSS 1775
Score = 57.0 bits (136), Expect = 6e-07
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Frame = +3
Query: 129 MTPGRSPISGTPYHEGMMSPSYMLS--PNLRLSPTNDAQFSPYV-GGMAFSPTS------ 281
++P SP S P + SPSY+ + P+ SP A Y +SPTS
Sbjct: 1578 VSPFYSPAS--PLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPT 1635
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+P+S YSPTSP Y+PTSP
Sbjct: 1636 SPVYSPTSPVYNPTSSAYSPTSPSYNPTSP 1665
Score = 56.6 bits (135), Expect = 8e-07
Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP A+SPTS PGYSP+SP YSPSSP Y+P+S Y+
Sbjct: 1726 SPSYSPTSPSY--SPTSSA-YSPT--SPAYSPTS-PGYSPTSPSYSPSSPSYNPSSVKYT 1779
Query: 360 PT 365
P+
Sbjct: 1780 PS 1781
Score = 54.7 bits (130), Expect = 3e-06
Identities = 35/79 (44%), Positives = 43/79 (54%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+PG SP S PSY SP+ SP+ + Y A+SP+S YS +SP
Sbjct: 1754 SPGYSPTS----------PSY--SPS---SPSYNPSSVKYTPSHAYSPSSPNYYSSTSPT 1798
Query: 312 YSPSSPGYSPTSPGYSPTS 368
YSP+SP YS SP YSPTS
Sbjct: 1799 YSPTSPSYSQPSPSYSPTS 1817
[16][TOP]
>UniRef100_C5Y387 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
RepID=C5Y387_SORBI
Length = 1874
Score = 143 bits (361), Expect = 5e-33
Identities = 82/172 (47%), Positives = 101/172 (58%), Gaps = 49/172 (28%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMT----PGRSPISGTPYH 170
NIMLGQLAPIGTG C+L+LND+ML+ AIELQLPSY+DGLDFG+T P SP+SG+ YH
Sbjct: 1447 NIMLGQLAPIGTGGCSLFLNDQMLQQAIELQLPSYVDGLDFGITSAPSPLSSPLSGSSYH 1506
Query: 171 EGMMSPSYMLSPNLRLSPTND-AQFSPYVGGMAFSPTSSPG------------------- 290
EG+MS S++LSP+ R SP + A FSPYV M+ SP S G
Sbjct: 1507 EGLMSSSHLLSPDFRHSPIDTYASFSPYVRDMSLSPVPSQGGYSPIPRSESGYSPIPRSV 1566
Query: 291 -------------------------YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
Y+P SP YSP++P Y+P SP YSPT+P
Sbjct: 1567 RYMAVSPIYTPYNAASPVNASTSTSYTPVSPVYSPTTPVYTPMSPVYSPTTP 1618
Score = 65.9 bits (159), Expect = 1e-09
Identities = 46/100 (46%), Positives = 55/100 (55%), Gaps = 20/100 (20%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSP-NLRLSPTN------DAQFSPYVGGMAFSPTS--- 281
+P + S T SPSY SP +L SPT+ +SP +++SPTS
Sbjct: 1660 SPASASYSPTSPFYSPTSPSY--SPASLSYSPTSPFYSPTSPSYSP--ASLSYSPTSPFY 1715
Query: 282 ---SPGYSPSSPGYSPSSP-------GYSPTSPGYSPTSP 371
SP YSPSSP YSP+SP GYSPTSPGYSPTSP
Sbjct: 1716 SPTSPSYSPSSPSYSPTSPTYSPTSLGYSPTSPGYSPTSP 1755
Score = 64.3 bits (155), Expect = 4e-09
Identities = 41/76 (53%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Frame = +3
Query: 183 SPSYMLSP-NLRLSPTN------DAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPS 323
SPSY SP +L SPT+ +SP ++SPTS S GYSP+SPGYSP+
Sbjct: 1698 SPSY--SPASLSYSPTSPFYSPTSPSYSP--SSPSYSPTSPTYSPTSLGYSPTSPGYSPT 1753
Query: 324 SPGYSPTSPGYSPTSP 371
SP YSPTSP YSPTSP
Sbjct: 1754 SPTYSPTSPNYSPTSP 1769
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY S + SPT+ +SP + +SPTS PGYSP+SP YSP+SP YSPTSP Y+
Sbjct: 1719 SPSYSPS-SPSYSPTSPT-YSPT--SLGYSPTS-PGYSPTSPTYSPTSPNYSPTSPSYN 1772
Score = 56.2 bits (134), Expect = 1e-06
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Frame = +3
Query: 144 SPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------------- 281
+P+S SP Y +SPN + FSP ++SP S
Sbjct: 1617 TPVSSQIQSYSSASPIYNPISPNSSRYNPSSPSFSPTSTSPSYSPASASYSPTSPFYSPT 1676
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTS 368
SP YSP+S YSP+SP YSPTSP YSP S
Sbjct: 1677 SPSYSPASLSYSPTSPFYSPTSPSYSPAS 1705
[17][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
RepID=C1EA31_9CHLO
Length = 1720
Score = 132 bits (331), Expect = 2e-29
Identities = 73/134 (54%), Positives = 90/134 (67%), Gaps = 11/134 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQ P+GTGE L+LN++MLK A++L L GL G+TPGR TP EG M
Sbjct: 1431 NIMLGQFCPLGTGEFGLHLNEDMLKEAVDLDLGLSEGGLGVGVTPGRGI---TPGREGAM 1487
Query: 183 SPSYMLSPNLRLSPTNDA-QFSP-------YVGG---MAFSPTSSPGYSPSSPGYSPSSP 329
SPS++LSP +SP +D+ +FSP + GG +SPTS P YSP+SP YSP+SP
Sbjct: 1488 SPSFLLSPTAHMSPFDDSMRFSPQGTDYGSHAGGGQSPGYSPTS-PAYSPTSPAYSPTSP 1546
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1547 AYSPTSPAYSPTSP 1560
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1580 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1633
Query: 360 PTSP 371
PTSP
Sbjct: 1634 PTSP 1637
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1587 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1640
Query: 360 PTSP 371
PTSP
Sbjct: 1641 PTSP 1644
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1594 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1647
Query: 360 PTSP 371
PTSP
Sbjct: 1648 PTSP 1651
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1601 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1654
Query: 360 PTSP 371
PTSP
Sbjct: 1655 PTSP 1658
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1608 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1661
Query: 360 PTSP 371
PTSP
Sbjct: 1662 PTSP 1665
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1615 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPQYS 1668
Query: 360 PTSP 371
PTSP
Sbjct: 1669 PTSP 1672
Score = 63.2 bits (152), Expect = 9e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1622 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPQYSPTSPQYS 1675
Query: 360 PTSP 371
PTSP
Sbjct: 1676 PTSP 1679
Score = 62.4 bits (150), Expect = 2e-08
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1629 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPQYSPTSPQYSPTSPQYS 1682
Query: 360 PTSP 371
PTSP
Sbjct: 1683 PTSP 1686
Score = 58.9 bits (141), Expect = 2e-07
Identities = 38/63 (60%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1636 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1689
Query: 360 PTS 368
PTS
Sbjct: 1690 PTS 1692
[18][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MI48_9CHLO
Length = 1694
Score = 129 bits (325), Expect = 8e-29
Identities = 72/134 (53%), Positives = 87/134 (64%), Gaps = 11/134 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSY-MDGLDFGMTPGRSPISGTPYHEGM 179
NIMLGQ P+GTGE L+LN+++LK A++L L ++ D L G TP R TP G
Sbjct: 1432 NIMLGQFCPLGTGEFGLHLNEDVLKEAVDLDLTTHSADALGAGTTPARGT---TPGGVGS 1488
Query: 180 MSPSYMLSPNLRLSPTNDA-QFSPYV---------GGMAFSPTSSPGYSPSSPGYSPSSP 329
SPS++LSP SP +D +FSPY GM FSPT SPGYSP+SP YSP+SP
Sbjct: 1489 ASPSFLLSPQAHASPFDDTMRFSPYTEGGGGGGGGDGMGFSPT-SPGYSPTSPAYSPTSP 1547
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1548 AYSPTSPAYSPTSP 1561
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1593 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1646
Query: 360 PTSP 371
PTSP
Sbjct: 1647 PTSP 1650
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/63 (60%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1600 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPQYS 1653
Query: 360 PTS 368
PTS
Sbjct: 1654 PTS 1656
[19][TOP]
>UniRef100_A4S3M0 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S3M0_OSTLU
Length = 1646
Score = 126 bits (316), Expect = 8e-28
Identities = 76/138 (55%), Positives = 88/138 (63%), Gaps = 15/138 (10%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQL---PSYMDGLDFGMTPGRSPISGTPYHE 173
NIMLGQ PIGTGE L+LNDE+L++A+EL+L S G MTPGR GTP
Sbjct: 1423 NIMLGQFCPIGTGEFKLHLNDELLQDAVELELFGDGSRTPGHGGMMTPGRD---GTPGW- 1478
Query: 174 GMMSPSYMLSPNLRLSPTNDAQ-FSPYVGGMAFSPTSSPG-----------YSPSSPGYS 317
G SPS++LSP SP + + FSPY GMAFSP SPG YSP+SP YS
Sbjct: 1479 GSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMAFSPGMSPGGFGGYSPTSPAYSPTSPAYS 1538
Query: 318 PSSPGYSPTSPGYSPTSP 371
P+SP YSPTSP YSPTSP
Sbjct: 1539 PTSPAYSPTSPAYSPTSP 1556
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1569 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1622
Query: 360 PTSP 371
PTSP
Sbjct: 1623 PTSP 1626
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1576 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1629
Query: 360 PTSP 371
PTSP
Sbjct: 1630 PTSP 1633
Score = 58.5 bits (140), Expect = 2e-07
Identities = 36/61 (59%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1583 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1636
Query: 360 P 362
P
Sbjct: 1637 P 1637
[20][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
RepID=A8IRZ2_CHLRE
Length = 1789
Score = 116 bits (290), Expect = 9e-25
Identities = 64/130 (49%), Positives = 82/130 (63%), Gaps = 7/130 (5%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHE-GM 179
NIM+G + P+GTG L L++ L++A ++Q+ + G D+ MTPGR S +P G
Sbjct: 1448 NIMMGNMCPLGTGSFDLLLDESALESAFDVQIGNLAFGEDYTMTPGRMTPSRSPARTPGP 1507
Query: 180 MSPSYMLSP------NLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
MSPS++LSP SP + FSP GG P S PGYSP+SPGYSP+SP YSP
Sbjct: 1508 MSPSHLLSPMHSPFVGSGFSPMHPGAFSPAHGGGVGGPMS-PGYSPTSPGYSPTSPRYSP 1566
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1567 TSPAYSPTSP 1576
Score = 60.8 bits (146), Expect = 4e-08
Identities = 39/67 (58%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS---SPGYSPSSPGYSPSSPGYSPTSP 350
SP+Y SP SPT+ A +SP A+SPTS SP YSP+SP YSP+SP SPTSP
Sbjct: 1624 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTSPAYSPAYSPTSPQYSPTSPSMSPTSP 1678
Query: 351 GYSPTSP 371
YSPTSP
Sbjct: 1679 RYSPTSP 1685
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP SP+SP YSPTSP YS
Sbjct: 1638 SPAYSPTSP--AYSPTSPA-YSP-----AYSPTS-PQYSPTSPSMSPTSPRYSPTSPNYS 1688
Query: 360 PTSP 371
PTSP
Sbjct: 1689 PTSP 1692
[21][TOP]
>UniRef100_O00820 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba
castellanii RepID=O00820_ACACA
Length = 1569
Score = 103 bits (256), Expect = 8e-21
Identities = 71/158 (44%), Positives = 86/158 (54%), Gaps = 35/158 (22%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGR-SPISGTPY---H 170
NI+LGQL P+GTG L+LN+ LK+AIE P+ + PG SP S TPY
Sbjct: 1360 NILLGQLPPLGTGCFDLFLNESKLKDAIEP--PAGGEATAMFYEPGATSPGSATPYMGSD 1417
Query: 171 EGMMSPSYMLSPNLRLSP--TNDAQFSPYV-------GGMAFSPT--------------- 278
E + + +P R+SP T A +SPYV G +FSP+
Sbjct: 1418 ERYLPNFFHTTPMYRMSPGATPAASYSPYVDFGEFSPGRGSFSPSPSSPSYSPASPGYSP 1477
Query: 279 -------SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SSPGYSPSSPGYSPSSPGYSP SPGYSP+SP
Sbjct: 1478 AGAGYSPSSPGYSPSSPGYSPSSPGYSPASPGYSPSSP 1515
Score = 68.2 bits (165), Expect = 3e-10
Identities = 40/82 (48%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +3
Query: 132 TPGRSPISG--TPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
+PG SP S +P G S SP+ ++SP ++SPTS P YSP+S
Sbjct: 1486 SPGYSPSSPGYSPSSPGYSPASPGYSPSSPAYSPTSPKYSP--ASPSYSPTS-PAYSPTS 1542
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSPSSP YSPTSP YSPTSP
Sbjct: 1543 PSYSPSSPSYSPTSPSYSPTSP 1564
[22][TOP]
>UniRef100_UPI00005A0B1F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 10 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1F
Length = 1840
Score = 101 bits (251), Expect = 3e-20
Identities = 65/134 (48%), Positives = 77/134 (57%), Gaps = 11/134 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL--QLPSY----MDGLDFGMTPGRSPISGTP 164
NIMLGQLAP GTG L L+ E K +E+ +P DG G +P SP G+P
Sbjct: 1450 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRDGFSPGYSPAWSPTPGSP 1509
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGM-----AFSPTSSPGYSPSSPGYSPSSP 329
G SP Y+ SP SPT+ A GG ++SPTS P YSP+SP YSP+SP
Sbjct: 1510 GSPGPSSP-YIPSPGELYSPTSPAYEPRSPGGYTPQSPSYSPTS-PSYSPTSPSYSPTSP 1567
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1568 NYSPTSPSYSPTSP 1581
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1594 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1647
Query: 360 PTSP 371
PTSP
Sbjct: 1648 PTSP 1651
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1601 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1654
Query: 360 PTSP 371
PTSP
Sbjct: 1655 PTSP 1658
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1608 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1661
Query: 360 PTSP 371
PTSP
Sbjct: 1662 PTSP 1665
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1615 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1668
Query: 360 PTSP 371
PTSP
Sbjct: 1669 PTSP 1672
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1622 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1675
Query: 360 PTSP 371
PTSP
Sbjct: 1676 PTSP 1679
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/72 (54%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTS------SPGYSPSSPGYSPSSPGY 335
SPSY SPN S N SP ++SPTS SP YSPSSP Y+P+SP Y
Sbjct: 1671 SPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 1730
Query: 336 SPTSPGYSPTSP 371
SPTSP YSPTSP
Sbjct: 1731 SPTSPKYSPTSP 1742
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1643 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1696
Query: 360 PTSP 371
PTSP
Sbjct: 1697 PTSP 1700
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1650 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1703
Query: 360 PTSP 371
PTSP
Sbjct: 1704 PTSP 1707
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1724 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1779
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1780 SPTSPTYSPTSPKYSPTSPTYSPTSP 1805
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1755 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1805
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1806 KGSTYSPTSPGYSPTSPTYSLTSP 1829
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1748 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1802
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1803 TSPKGSTYSPTSPGYSPTSP 1822
[23][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
RepID=Q8MX30_NAEGR
Length = 1590
Score = 99.4 bits (246), Expect = 1e-19
Identities = 68/156 (43%), Positives = 84/156 (53%), Gaps = 33/156 (21%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSY------MDGLDFGMTPGRSPISGTP 164
N+M+GQLAPIGTG LYL++E+LK A+ ++ PS+ M G TP + TP
Sbjct: 1412 NVMVGQLAPIGTGCFGLYLDEELLKQAVAVK-PSFVTETKSMYGSLGATTPYHTSGLATP 1470
Query: 165 YHEGMMSPSY----------MLSPNLRL-SPTNDAQFSPYVGGMAFSPT----------- 278
YH G+ +P + ++P R SP FSP AFSP
Sbjct: 1471 YHGGVATPYHGGASSPWTQGAMTPLGRTPSPEYQGGFSPSPYNSAFSPVASSPTSPGHQG 1530
Query: 279 ----SSPG-YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SSPG YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1531 GYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPTSP 1566
[24][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
discoideum RepID=RPB1_DICDI
Length = 1727
Score = 98.2 bits (243), Expect = 2e-19
Identities = 62/157 (39%), Positives = 81/157 (51%), Gaps = 34/157 (21%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL----------------QLPSYMDGLDFGMT 134
NI+LGQL P+GTG ++LN +M+KNA + Q PSY G D T
Sbjct: 1445 NIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSYPDTPGSQTPSYSYG-DGSTT 1503
Query: 135 PGRSPISG--TPYHE---GMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------ 281
P +P +P++E G SPS M SP + + + + + +SPTS
Sbjct: 1504 PFHNPYDAPLSPFNETFRGDFSPSAMNSPGYNANKSYGSSYQYFPQSPTYSPTSPSYSPT 1563
Query: 282 -------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1564 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1600
Score = 65.9 bits (159), Expect = 1e-09
Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S P++ SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1592 SPSYSPTS--PFYSPT-SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1642
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1643 SYSPTSPSYSPTSPSYSPTSP 1663
Score = 65.5 bits (158), Expect = 2e-09
Identities = 45/92 (48%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
PSY F +P S T SPSY SP+ SPT+ + +SP ++SP
Sbjct: 1593 PSYSPTSPF-YSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSP 1646
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1647 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1677
Score = 63.5 bits (153), Expect = 7e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPSSP YSPSSP YSP+SP YS
Sbjct: 1655 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPSSPSYSPSSPSYSPSSPSYS 1708
Query: 360 PTSP 371
P+SP
Sbjct: 1709 PSSP 1712
[25][TOP]
>UniRef100_UPI00005A0B1E PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 9 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1E
Length = 1851
Score = 97.4 bits (241), Expect = 4e-19
Identities = 61/129 (47%), Positives = 74/129 (57%), Gaps = 6/129 (4%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL--QLPSY----MDGLDFGMTPGRSPISGTP 164
NIMLGQLAP GTG L L+ E K +E+ +P DG G +P SP G+P
Sbjct: 1450 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRDGFSPGYSPAWSPTPGSP 1509
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
G SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPT
Sbjct: 1510 GSPGPSSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPT 1562
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 1563 SPSYSPTSP 1571
Score = 65.1 bits (157), Expect = 2e-09
Identities = 37/64 (57%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN S N SP ++SPTS P YSPSSP YSP+SP Y+PTSP YS
Sbjct: 1675 SPSYSPTSPNYSPSRPNYTPTSP-----SYSPTS-PSYSPSSPSYSPTSPKYTPTSPSYS 1728
Query: 360 PTSP 371
P+SP
Sbjct: 1729 PSSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1598 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1651
Query: 360 PTSP 371
PTSP
Sbjct: 1652 PTSP 1655
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1605 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1658
Query: 360 PTSP 371
PTSP
Sbjct: 1659 PTSP 1662
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1612 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1665
Query: 360 PTSP 371
PTSP
Sbjct: 1666 PTSP 1669
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1619 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1672
Query: 360 PTSP 371
PTSP
Sbjct: 1673 PTSP 1676
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1626 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1679
Query: 360 PTSP 371
PTSP
Sbjct: 1680 PTSP 1683
Score = 61.2 bits (147), Expect = 3e-08
Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SPSY SPT+ + +SP ++SPTS SP YSPSSP Y+P+SP YSPT
Sbjct: 1696 SPSY--------SPTSPS-YSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT 1744
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 1745 SPKYSPTSP 1753
Score = 60.8 bits (146), Expect = 4e-08
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1633 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1686
Query: 360 PTSP 371
P+ P
Sbjct: 1687 PSRP 1690
Score = 60.8 bits (146), Expect = 4e-08
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++PTS P YSP+SP YSPSSP YSPTSP Y+
Sbjct: 1668 SPSYSPTSPSY--SPTSP-NYSP--SRPNYTPTS-PSYSPTSPSYSPSSPSYSPTSPKYT 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 59.7 bits (143), Expect = 1e-07
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSP+ P Y+
Sbjct: 1640 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPSRPNYT 1693
Query: 360 PTSP 371
PTSP
Sbjct: 1694 PTSP 1697
Score = 59.7 bits (143), Expect = 1e-07
Identities = 38/80 (47%), Positives = 50/80 (62%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P R + T SPSY S + SPT+ +++P ++SP SSP Y+P+SP
Sbjct: 1686 SPSRPNYTPTSPSYSPTSPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPK 1740
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1741 YSPTSPKYSPTSPKYSPTSP 1760
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1735 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1790
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1791 SPTSPTYSPTSPKYSPTSPTYSPTSP 1816
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1766 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1816
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1817 KGSTYSPTSPGYSPTSPTYSLTSP 1840
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1759 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1813
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1814 TSPKGSTYSPTSPGYSPTSP 1833
[26][TOP]
>UniRef100_UPI00005A0B1C PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 8 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1C
Length = 1719
Score = 96.7 bits (239), Expect = 7e-19
Identities = 60/125 (48%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL--QLPSYMDGLDFGMTPGRSPISGTPYHEG 176
NIMLGQLAP GTG L L+ E K +E+ +P G G +P SP G+P G
Sbjct: 1448 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPD-ASGFSPGYSPAWSPTPGSPGSPG 1506
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 356
SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPTSP Y
Sbjct: 1507 PSSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSY 1559
Query: 357 SPTSP 371
SPTSP
Sbjct: 1560 SPTSP 1564
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1591 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1644
Query: 360 PTSP 371
PTSP
Sbjct: 1645 PTSP 1648
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1598 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1651
Query: 360 PTSP 371
PTSP
Sbjct: 1652 PTSP 1655
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1605 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1658
Query: 360 PTSP 371
PTSP
Sbjct: 1659 PTSP 1662
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1612 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1665
Query: 360 PTSP 371
PTSP
Sbjct: 1666 PTSP 1669
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1619 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1672
Query: 360 PTSP 371
PTSP
Sbjct: 1673 PTSP 1676
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1640 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1693
Query: 360 PTSP 371
PTSP
Sbjct: 1694 PTSP 1697
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1647 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1700
Query: 360 PTSP 371
PTSP
Sbjct: 1701 PTSP 1704
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++PTS P YSP+SP YSP+SP Y+P SP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSP-NYSP--SRPNYTPTS-PSYSPTSPSYSPTSPNYTPMSPNYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
[27][TOP]
>UniRef100_UPI00005A0B1B PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 7 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1B
Length = 1858
Score = 96.7 bits (239), Expect = 7e-19
Identities = 60/125 (48%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL--QLPSYMDGLDFGMTPGRSPISGTPYHEG 176
NIMLGQLAP GTG L L+ E K +E+ +P G G +P SP G+P G
Sbjct: 1448 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPD-ASGFSPGYSPAWSPTPGSPGSPG 1506
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 356
SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPTSP Y
Sbjct: 1507 PSSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSY 1559
Query: 357 SPTSP 371
SPTSP
Sbjct: 1560 SPTSP 1564
Score = 65.5 bits (158), Expect = 2e-09
Identities = 37/64 (57%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN S N SP ++SPTS P YSP+SP Y+P SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPNYSPSRPNYTPTSP-----SYSPTS-PSYSPTSPNYTPMSPNYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.7 bits (156), Expect = 3e-09
Identities = 41/87 (47%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+P R + T SPSY SPN N + SP ++SPTS SP
Sbjct: 1679 SPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTSP-----SYSPTSPKYTPTSPS 1733
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSPSSP Y+P+SP YSPTSP YSPTSP
Sbjct: 1734 YSPSSPEYTPTSPKYSPTSPKYSPTSP 1760
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1591 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1644
Query: 360 PTSP 371
PTSP
Sbjct: 1645 PTSP 1648
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1598 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1651
Query: 360 PTSP 371
PTSP
Sbjct: 1652 PTSP 1655
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1605 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1658
Query: 360 PTSP 371
PTSP
Sbjct: 1659 PTSP 1662
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1612 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1665
Query: 360 PTSP 371
PTSP
Sbjct: 1666 PTSP 1669
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1619 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1672
Query: 360 PTSP 371
PTSP
Sbjct: 1673 PTSP 1676
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1640 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1693
Query: 360 PTSP 371
PTSP
Sbjct: 1694 PTSP 1697
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1647 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1700
Query: 360 PTSP 371
PTSP
Sbjct: 1701 PTSP 1704
Score = 60.8 bits (146), Expect = 4e-08
Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
TP S T SP+Y +SPN SPT+ + +SP ++PTS SP
Sbjct: 1686 TPTSPSYSPTSPSYSPTSPNYTPMSPNY--SPTSPS-YSPT--SPKYTPTSPSYSPSSPE 1740
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
Y+P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1741 YTPTSPKYSPTSPKYSPTSPKYSPTSP 1767
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1742 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1797
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1798 SPTSPTYSPTSPKYSPTSPTYSPTSP 1823
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1773 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1823
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1824 KGSTYSPTSPGYSPTSPTYSLTSP 1847
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1766 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1820
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1821 TSPKGSTYSPTSPGYSPTSP 1840
[28][TOP]
>UniRef100_UPI00005A0B1D PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=2 Tax=Canis lupus familiaris
RepID=UPI00005A0B1D
Length = 1764
Score = 95.5 bits (236), Expect = 2e-18
Identities = 67/145 (46%), Positives = 78/145 (53%), Gaps = 22/145 (15%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------QLPSYMDGLDFGMTP--- 137
NIMLGQLAP GTG L L+ E K +E+ PS M G+ MTP
Sbjct: 1488 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPATGMFFGSAPSPMGGISPAMTPWNQ 1547
Query: 138 GRSPISG--TPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGM-----AFSPTSSPGYS 296
G +P G +P G MSPSY SPT+ A GG ++SPTS P YS
Sbjct: 1548 GATPAYGAWSPSVGGAMSPSY--------SPTSPAYEPRSPGGYTPQSPSYSPTS-PSYS 1598
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1599 PTSPSYSPTSPNYSPTSPSYSPTSP 1623
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1636 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1689
Query: 360 PTSP 371
PTSP
Sbjct: 1690 PTSP 1693
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1643 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1696
Query: 360 PTSP 371
PTSP
Sbjct: 1697 PTSP 1700
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1650 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1703
Query: 360 PTSP 371
PTSP
Sbjct: 1704 PTSP 1707
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1657 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1710
Query: 360 PTSP 371
PTSP
Sbjct: 1711 PTSP 1714
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1664 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1717
Query: 360 PTSP 371
PTSP
Sbjct: 1718 PTSP 1721
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1685 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1738
Query: 360 PTSP 371
PTSP
Sbjct: 1739 PTSP 1742
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1692 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1745
Query: 360 PTSP 371
PTSP
Sbjct: 1746 PTSP 1749
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++PTS P YSP+SP YSP+SP Y+P SP YS
Sbjct: 1706 SPSYSPTSPSY--SPTSP-NYSP--SRPNYTPTS-PSYSPTSPSYSPTSPNYTPMSPNYS 1759
Query: 360 PTSP 371
PTSP
Sbjct: 1760 PTSP 1763
[29][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
RepID=Q9AXN0_9RHOD
Length = 1746
Score = 95.1 bits (235), Expect = 2e-18
Identities = 69/174 (39%), Positives = 83/174 (47%), Gaps = 51/174 (29%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ---------LPSYMDGLD----------- 122
NIMLGQ+AP+GTGE L LN++ LKN I + L S G D
Sbjct: 1453 NIMLGQMAPVGTGEFGLLLNEKALKNLITAEEDARTPRAGLMSPAHGFDTPRAFDAGSMT 1512
Query: 123 -FGMTPGR--------------SPISGTPYHEGMMSPS-----YMLSPNLRLSPTNDAQF 242
+ TPG+ SP + +PY + SP+ Y SP N A
Sbjct: 1513 PYPATPGQATPSYPYTPIGGQFSPFAASPYGDAAFSPTPTSPAYASPYGTAASPFN-AMA 1571
Query: 243 SPY--VGGMAFSPTS---------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPY G +SP S SPGYSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1572 SPYSRAGNAFYSPRSPSSPGGVAASPGYSPTSPTYSPTSPSYSPTSPSYSPTSP 1625
Score = 67.8 bits (164), Expect = 4e-10
Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRL-SPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S T SP+Y SP + SP++ A GG+++SP SSP YSPSSP
Sbjct: 1638 SPTYSPTSPT---YSPTSPTY--SPTSPMYSPSSPAMSPARAGGVSYSP-SSPHYSPSSP 1691
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSP+SP YSP+SP
Sbjct: 1692 QYSPSSPHYSPSSPHYSPSSP 1712
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/81 (46%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP SP Y SP S + + SP+ +SP SSP YSPSSP
Sbjct: 1666 SPAMSPARAGGVSYSPSSPHYSPSSPQYSPSSPHYSPSSPH-----YSP-SSPQYSPSSP 1719
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSP+SP YSP+SP
Sbjct: 1720 QYSPSSPAYSPSSPAYSPSSP 1740
[30][TOP]
>UniRef100_UPI00005A0B27 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 18 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B27
Length = 1831
Score = 93.2 bits (230), Expect = 8e-18
Identities = 64/132 (48%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDF----GMTPGRSPISGTPYH 170
NIMLGQLAP GTG L L+ E K +E+ P+ + GL GMTPG +
Sbjct: 1454 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEI--PTNIPGLGAAGRSGMTPGAAG------- 1504
Query: 171 EGMMSPSYMLSPNLRLSPTNDAQFSPYVGGM-----AFSPTSSPGYSPSSPGYSPSSPGY 335
G MSPSY SPT+ A GG ++SPTS P YSP+SP YSP+SP Y
Sbjct: 1505 -GAMSPSY--------SPTSPAYEPRSPGGYTPQSPSYSPTS-PSYSPTSPSYSPTSPNY 1554
Query: 336 SPTSPGYSPTSP 371
SPTSP YSPTSP
Sbjct: 1555 SPTSPSYSPTSP 1566
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1600 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1653
Query: 360 PTSP 371
PTSP
Sbjct: 1654 PTSP 1657
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1607 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1660
Query: 360 PTSP 371
PTSP
Sbjct: 1661 PTSP 1664
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1628 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1681
Query: 360 PTSP 371
PTSP
Sbjct: 1682 PTSP 1685
Score = 62.4 bits (150), Expect = 2e-08
Identities = 40/82 (48%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +3
Query: 132 TPGRSPISG--TPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
+P SP S TP MSP+Y +P+ S SP +SPTS P YSP+S
Sbjct: 1684 SPSYSPTSPNYTP-----MSPNYSPTPSYSPSSPEYTPTSP-----KYSPTS-PKYSPTS 1732
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPT+P YSPTSP
Sbjct: 1733 PKYSPTSPTYSPTTPKYSPTSP 1754
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/78 (48%), Positives = 43/78 (55%), Gaps = 15/78 (19%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTS------------SPGYSPSSPGYS 317
SPSY SPN S N SP ++SPTS +P YSPSSP Y+
Sbjct: 1656 SPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTPSYSPSSPEYT 1715
Query: 318 PSSPGYSPTSPGYSPTSP 371
P+SP YSPTSP YSPTSP
Sbjct: 1716 PTSPKYSPTSPKYSPTSP 1733
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1715 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1770
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1771 SPTSPTYSPTSPKYSPTSPTYSPTSP 1796
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1746 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1796
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1797 KGSTYSPTSPGYSPTSPTYSLTSP 1820
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1739 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1793
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1794 TSPKGSTYSPTSPGYSPTSP 1813
[31][TOP]
>UniRef100_UPI00005A0B19 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 5 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B19
Length = 1693
Score = 93.2 bits (230), Expect = 8e-18
Identities = 64/132 (48%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDF----GMTPGRSPISGTPYH 170
NIMLGQLAP GTG L L+ E K +E+ P+ + GL GMTPG +
Sbjct: 1440 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEI--PTNIPGLGAAGRSGMTPGAAG------- 1490
Query: 171 EGMMSPSYMLSPNLRLSPTNDAQFSPYVGGM-----AFSPTSSPGYSPSSPGYSPSSPGY 335
G MSPSY SPT+ A GG ++SPTS P YSP+SP YSP+SP Y
Sbjct: 1491 -GAMSPSY--------SPTSPAYEPRSPGGYTPQSPSYSPTS-PSYSPTSPSYSPTSPNY 1540
Query: 336 SPTSPGYSPTSP 371
SPTSP YSPTSP
Sbjct: 1541 SPTSPSYSPTSP 1552
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1586 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1639
Query: 360 PTSP 371
PTSP
Sbjct: 1640 PTSP 1643
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1593 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1646
Query: 360 PTSP 371
PTSP
Sbjct: 1647 PTSP 1650
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1614 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1667
Query: 360 PTSP 371
PTSP
Sbjct: 1668 PTSP 1671
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1621 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1674
Query: 360 PTSP 371
PTSP
Sbjct: 1675 PTSP 1678
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++PTS P YSP+SP YSP+SP Y+P SP YS
Sbjct: 1635 SPSYSPTSPSY--SPTSP-NYSP--SRPNYTPTS-PSYSPTSPSYSPTSPNYTPMSPNYS 1688
Query: 360 PTSP 371
PTSP
Sbjct: 1689 PTSP 1692
[32][TOP]
>UniRef100_B7G9I2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeodactylum
tricornutum CCAP 1055/1 RepID=B7G9I2_PHATR
Length = 1706
Score = 91.3 bits (225), Expect = 3e-17
Identities = 59/160 (36%), Positives = 77/160 (48%), Gaps = 37/160 (23%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLN-DEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGM 179
NIM+GQLA +GTG+ L L+ D++++ A+E+ + + D GM TPY
Sbjct: 1398 NIMMGQLARVGTGDVDLLLDEDKVVREAVEVVVDEFAVDKDLGMAGVGGVGGATPYATTP 1457
Query: 180 MSPSYMLSPNLRLSPTND--AQFSPYVGGMAFSPT------------------------- 278
+ S M+ SP D A FSP VG +FSP
Sbjct: 1458 FAASPMVGDGAAASPFVDGGAAFSPAVGAASFSPAYSPDSGSYGSGFASGSYGAGDSPAY 1517
Query: 279 ---------SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1518 SPTSPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1557
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1549 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1602
Query: 360 PTSP 371
PTSP
Sbjct: 1603 PTSP 1606
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1556 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1609
Query: 360 PTSP 371
PTSP
Sbjct: 1610 PTSP 1613
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1563 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1616
Query: 360 PTSP 371
PTSP
Sbjct: 1617 PTSP 1620
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1570 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1623
Query: 360 PTSP 371
PTSP
Sbjct: 1624 PTSP 1627
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1577 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1630
Query: 360 PTSP 371
PTSP
Sbjct: 1631 PTSP 1634
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1584 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1637
Query: 360 PTSP 371
PTSP
Sbjct: 1638 PTSP 1641
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1591 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1644
Query: 360 PTSP 371
PTSP
Sbjct: 1645 PTSP 1648
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1598 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1651
Query: 360 PTSP 371
PTSP
Sbjct: 1652 PTSP 1655
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1605 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1658
Query: 360 PTSP 371
PTSP
Sbjct: 1659 PTSP 1662
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1612 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1665
Query: 360 PTSP 371
PTSP
Sbjct: 1666 PTSP 1669
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1619 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1672
Query: 360 PTSP 371
PTSP
Sbjct: 1673 PTSP 1676
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1626 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1679
Query: 360 PTSP 371
PTSP
Sbjct: 1680 PTSP 1683
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1633 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1686
Query: 360 PTSP 371
PTSP
Sbjct: 1687 PTSP 1690
Score = 58.9 bits (141), Expect = 2e-07
Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1640 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1693
Query: 360 PT 365
P+
Sbjct: 1694 PS 1695
[33][TOP]
>UniRef100_UPI0000F2BF13 PREDICTED: similar to RNA polymerase II isoform 2 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF13
Length = 1932
Score = 90.9 bits (224), Expect = 4e-17
Identities = 64/149 (42%), Positives = 77/149 (51%), Gaps = 26/149 (17%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDF----GMTPGR--------- 143
NIMLGQLAP GTG L L+ E K +E+ P+ + GL GMTPG
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEI--PTNIPGLGAAGRSGMTPGAAGFSPSAAS 1514
Query: 144 -------------SPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSS 284
SP G+P G SP Y+ SP +SP+ +SP A+ P S
Sbjct: 1515 DASGFSPGYSPAWSPTPGSPGSPGPSSP-YIPSPGGAMSPS----YSPT--SPAYEPRSP 1567
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1568 GGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1596
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1700 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1753
Query: 360 PTSP 371
PTSP
Sbjct: 1754 PTSP 1757
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1616 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1669
Query: 360 PTSP 371
PTSP
Sbjct: 1670 PTSP 1673
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1623 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1676
Query: 360 PTSP 371
PTSP
Sbjct: 1677 PTSP 1680
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1630 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1683
Query: 360 PTSP 371
PTSP
Sbjct: 1684 PTSP 1687
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1637 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1690
Query: 360 PTSP 371
PTSP
Sbjct: 1691 PTSP 1694
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1644 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1697
Query: 360 PTSP 371
PTSP
Sbjct: 1698 PTSP 1701
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1651 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1704
Query: 360 PTSP 371
PTSP
Sbjct: 1705 PTSP 1708
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1658 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1711
Query: 360 PTSP 371
PTSP
Sbjct: 1712 PTSP 1715
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1665 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1718
Query: 360 PTSP 371
PTSP
Sbjct: 1719 PTSP 1722
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1672 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1725
Query: 360 PTSP 371
PTSP
Sbjct: 1726 PTSP 1729
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1679 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1732
Query: 360 PTSP 371
PTSP
Sbjct: 1733 PTSP 1736
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1693 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1746
Query: 360 PTSP 371
PTSP
Sbjct: 1747 PTSP 1750
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1739 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1790
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1791 SPSYSPTSPKYTPTSPSYSPSSP 1813
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 1763 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1820
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1821 KYSPTSPKYSPTSP 1834
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1816 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1871
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1872 SPTSPTYSPTSPKYSPTSPTYSPTSP 1897
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1784 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1838
Query: 363 TSP 371
TSP
Sbjct: 1839 TSP 1841
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1847 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1897
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1898 KGSTYSPTSPGYSPTSPTYSLTSP 1921
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1840 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1894
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1895 TSPKGSTYSPTSPGYSPTSP 1914
[34][TOP]
>UniRef100_UPI0001B7A25B UPI0001B7A25B related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25B
Length = 1932
Score = 90.9 bits (224), Expect = 4e-17
Identities = 64/149 (42%), Positives = 77/149 (51%), Gaps = 26/149 (17%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDF----GMTPGR--------- 143
NIMLGQLAP GTG L L+ E K +E+ P+ + GL GMTPG
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEI--PTNIPGLGAAGRSGMTPGAAGFSPSAAS 1514
Query: 144 -------------SPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSS 284
SP G+P G SP Y+ SP +SP+ +SP A+ P S
Sbjct: 1515 DASGFSPGYSPAWSPTPGSPGSPGPSSP-YIPSPGGAMSPS----YSPT--SPAYEPRSP 1567
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1568 GGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1596
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1700 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1753
Query: 360 PTSP 371
PTSP
Sbjct: 1754 PTSP 1757
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1616 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1669
Query: 360 PTSP 371
PTSP
Sbjct: 1670 PTSP 1673
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1623 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1676
Query: 360 PTSP 371
PTSP
Sbjct: 1677 PTSP 1680
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1630 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1683
Query: 360 PTSP 371
PTSP
Sbjct: 1684 PTSP 1687
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1637 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1690
Query: 360 PTSP 371
PTSP
Sbjct: 1691 PTSP 1694
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1644 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1697
Query: 360 PTSP 371
PTSP
Sbjct: 1698 PTSP 1701
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1651 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1704
Query: 360 PTSP 371
PTSP
Sbjct: 1705 PTSP 1708
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1658 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1711
Query: 360 PTSP 371
PTSP
Sbjct: 1712 PTSP 1715
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1665 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1718
Query: 360 PTSP 371
PTSP
Sbjct: 1719 PTSP 1722
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1672 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1725
Query: 360 PTSP 371
PTSP
Sbjct: 1726 PTSP 1729
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1679 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1732
Query: 360 PTSP 371
PTSP
Sbjct: 1733 PTSP 1736
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1693 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1746
Query: 360 PTSP 371
PTSP
Sbjct: 1747 PTSP 1750
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1739 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1790
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1791 SPSYSPTSPKYTPTSPSYSPSSP 1813
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 1763 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1820
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1821 KYSPTSPKYSPTSP 1834
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1816 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1871
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1872 SPTSPTYSPTSPKYSPTSPTYSPTSP 1897
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1784 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1838
Query: 363 TSP 371
TSP
Sbjct: 1839 TSP 1841
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1847 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1897
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1898 KGSTYSPTSPGYSPTSPTYSLTSP 1921
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1840 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1894
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1895 TSPKGSTYSPTSPGYSPTSP 1914
[35][TOP]
>UniRef100_UPI00019270E9 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 2 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270E9
Length = 2014
Score = 90.1 bits (222), Expect = 7e-17
Identities = 65/177 (36%), Positives = 82/177 (46%), Gaps = 54/177 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQL---------------------------- 98
NI+LGQL PIGTG L L+ E K +E+ L
Sbjct: 1458 NIILGQLPPIGTGCFNLMLDAEKCKEGMEIPLNIGEGGGVFFGSAASPSNAMSPQMTPWN 1517
Query: 99 ----PSYMDG----LDFGMTPGRSPISGTPYHE-------GMMSPSYMLSPNLRLSPTND 233
P Y DG L GMTPG + S + + + G SP++ ++ N
Sbjct: 1518 QGHTPGYGDGWSPALGSGMTPGAASFSPSAHSDASGFSPAGGFSPAWSPQDSIPSYSPNS 1577
Query: 234 AQFSPYVGGMA-----FSPTS------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
F+P M+ +SPTS SPGYSP+SP YSP+SPGYSPTSP YSPTSP
Sbjct: 1578 PAFNPQSPAMSPSSPGYSPTSPLYSPTSPGYSPTSPSYSPTSPGYSPTSPSYSPTSP 1634
Score = 66.6 bits (161), Expect = 8e-10
Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+PG SP S + P G SPSY SP+ SPT+ + +SP ++SPTS P YS
Sbjct: 1605 SPGYSPTSPSYSPTSPGYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYS 1658
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1659 PTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1619 SPGYSPTSPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1669
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSP 1690
Score = 65.5 bits (158), Expect = 2e-09
Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ ++SP +SPTS P YSPSSP YSPSSP YSPTSP YS
Sbjct: 1773 SPSYSPTSP--KYSPTSP-KYSPT--SPKYSPTS-PSYSPSSPSYSPSSPNYSPTSPTYS 1826
Query: 360 PTSP 371
PTSP
Sbjct: 1827 PTSP 1830
Score = 63.9 bits (154), Expect = 5e-09
Identities = 42/80 (52%), Positives = 49/80 (61%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P SP S T SP+Y SPT+ A +SP A+SPTS P YSP+SP
Sbjct: 1815 SPNYSPTSPT---YSPTSPTY--------SPTSPA-YSPT--SPAYSPTS-PAYSPTSPV 1859
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1860 YSPTSPAYSPTSPKYSPTSP 1879
Score = 63.5 bits (153), Expect = 7e-09
Identities = 37/66 (56%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 353
SPSY SPN + + SP A+SPTS P YSP+SP YSP+SP YSPTSP
Sbjct: 1808 SPSYSPSSPNYSPTSPTYSPTSPTYSPTSPAYSPTS-PAYSPTSPAYSPTSPVYSPTSPA 1866
Query: 354 YSPTSP 371
YSPTSP
Sbjct: 1867 YSPTSP 1872
Score = 63.2 bits (152), Expect = 9e-09
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSP 341
SPSY SP+ SPT+ + +SP ++SPTS SP YSP+SP YSP+SP YSP
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPIYSPTSPSYSPTSPSYSPTSPSYSP 1729
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1730 TSPKYSPTSP 1739
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/63 (58%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SPT+ + +SP +SPTS P YSP SP YSPSSP YSPTSP YSP
Sbjct: 1738 SPSY--------SPTSPS-YSP--SSPQYSPTS-PAYSPQSPSYSPSSPSYSPTSPKYSP 1785
Query: 363 TSP 371
TSP
Sbjct: 1786 TSP 1788
Score = 63.2 bits (152), Expect = 9e-09
Identities = 44/94 (46%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 93 QLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAF 269
Q PSY +P S T SP Y SP + SPT+ + +SP ++
Sbjct: 1765 QSPSY--------SPSSPSYSPTSPKYSPTSPKYSPTSP--KYSPTSPS-YSP--SSPSY 1811
Query: 270 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP SSP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1812 SP-SSPNYSPTSPTYSPTSPTYSPTSPAYSPTSP 1844
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPI-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPKYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 61.6 bits (148), Expect = 3e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP +SPTS P YSP+SP YSPSSP YSPTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPKYSPTS-PSYSPTSPSYSPSSPQYSPTSPAYS 1763
Query: 360 PTSP 371
P SP
Sbjct: 1764 PQSP 1767
Score = 61.2 bits (147), Expect = 3e-08
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDA------QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
SPSY S + + SPT+ A +SP ++SPTS P YSP+SP YSP+SP YSPT
Sbjct: 1745 SPSYSPS-SPQYSPTSPAYSPQSPSYSP--SSPSYSPTS-PKYSPTSPKYSPTSPKYSPT 1800
Query: 345 SPGYSPTSP 371
SP YSP+SP
Sbjct: 1801 SPSYSPSSP 1809
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ +SP A+SPTS+ GYSP+SP YSPSSP YSPT+P YS
Sbjct: 1871 SPKYSPTSP--KYSPTSPI-YSPT--SPAYSPTST-GYSPTSPEYSPSSPKYSPTTPQYS 1924
Query: 360 PTSP 371
PTSP
Sbjct: 1925 PTSP 1928
Score = 60.1 bits (144), Expect = 7e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYMLSPNLRL-SPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP + SPT+ A +SP +SPTS P YSP+SP YSP+SP YSPTS GYS
Sbjct: 1850 SPAY--SPTSPVYSPTSPA-YSPT--SPKYSPTS-PKYSPTSPIYSPTSPAYSPTSTGYS 1903
Query: 360 PTSP 371
PTSP
Sbjct: 1904 PTSP 1907
Score = 60.1 bits (144), Expect = 7e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYMLSPNLRL-SPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ A +SP G +SPTS P YSPSSP YSP++P YSPTSP YS
Sbjct: 1878 SPKY--SPTSPIYSPTSPA-YSPTSTG--YSPTS-PEYSPSSPKYSPTTPQYSPTSPKYS 1931
Query: 360 PTSP 371
P SP
Sbjct: 1932 PASP 1935
[36][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JYP8_SCHJY
Length = 1748
Score = 89.7 bits (221), Expect = 9e-17
Identities = 64/153 (41%), Positives = 81/153 (52%), Gaps = 30/153 (19%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPI---SGTPYHE 173
NIMLGQLAP+GTG ++L+ ++L + ++PS G G++ + S TPY
Sbjct: 1433 NIMLGQLAPMGTGSFDVFLDQDLLLS----EVPSAGMPTLVGTGMGKAILPEGSATPYER 1488
Query: 174 GMMSPS-YMLSPNLRLSPTNDAQFSPYV-----------GGMA---------------FS 272
++ S YM SP+ DA FSP + G MA FS
Sbjct: 1489 SPLADSGYMGSPD-------DAAFSPLIQTSQDTHDDDYGMMASPYGADARSPGYMSPFS 1541
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SSPG+SPSSP YSPSSP YSPTSP YSPTSP
Sbjct: 1542 GASSPGFSPSSPSYSPSSPAYSPTSPSYSPTSP 1574
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1594 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1647
Query: 360 PTSP 371
PTSP
Sbjct: 1648 PTSP 1651
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1601 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1654
Query: 360 PTSP 371
PTSP
Sbjct: 1655 PTSP 1658
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1608 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1661
Query: 360 PTSP 371
PTSP
Sbjct: 1662 PTSP 1665
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1615 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1668
Query: 360 PTSP 371
PTSP
Sbjct: 1669 PTSP 1672
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1622 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1675
Query: 360 PTSP 371
PTSP
Sbjct: 1676 PTSP 1679
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1629 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1682
Query: 360 PTSP 371
PTSP
Sbjct: 1683 PTSP 1686
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1636 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1689
Query: 360 PTSP 371
PTSP
Sbjct: 1690 PTSP 1693
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1643 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1696
Query: 360 PTSP 371
PTSP
Sbjct: 1697 PTSP 1700
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1650 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1703
Query: 360 P 362
P
Sbjct: 1704 P 1704
Score = 55.8 bits (133), Expect = 1e-06
Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS---SPGYS---------PSSPGYSPS 323
SPSY SP+ SPT+ + +SP ++SPTS SPG+S P SP YSP+
Sbjct: 1671 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPSYSPGHSAQNAQGRMSPRSPVYSPT 1725
Query: 324 SPGYSPTSPGYSPTSP 371
SP YSPTSP YSPTSP
Sbjct: 1726 SPSYSPTSPSYSPTSP 1741
[37][TOP]
>UniRef100_UPI00005A0B26 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 17 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B26
Length = 1684
Score = 88.6 bits (218), Expect = 2e-16
Identities = 63/138 (45%), Positives = 74/138 (53%), Gaps = 15/138 (10%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQL--------------PSYMDGLDFGMTPG 140
NIMLGQLAP GTG L L+ E K +E+ P+Y G TP
Sbjct: 1447 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRESTSPAYEPRSPGGYTPQ 1506
Query: 141 RSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYS 317
S T SPSY SPN SPT+ + +SP ++SPTS P YSP+SP YS
Sbjct: 1507 SPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYS 1560
Query: 318 PSSPGYSPTSPGYSPTSP 371
P+SP YSPTSP YSPTSP
Sbjct: 1561 PTSPSYSPTSPSYSPTSP 1578
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1584 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1637
Query: 360 PTSP 371
PTSP
Sbjct: 1638 PTSP 1641
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1605 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1658
Query: 360 PTSP 371
PTSP
Sbjct: 1659 PTSP 1662
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1612 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1665
Query: 360 PTSP 371
PTSP
Sbjct: 1666 PTSP 1669
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++PTS P YSP+SP YSP+SP Y+P SP YS
Sbjct: 1626 SPSYSPTSPSY--SPTSP-NYSP--SRPNYTPTS-PSYSPTSPSYSPTSPNYTPMSPNYS 1679
Query: 360 PTSP 371
PTSP
Sbjct: 1680 PTSP 1683
[38][TOP]
>UniRef100_UPI00005A0B25 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 16 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B25
Length = 1752
Score = 88.6 bits (218), Expect = 2e-16
Identities = 63/138 (45%), Positives = 74/138 (53%), Gaps = 15/138 (10%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQL--------------PSYMDGLDFGMTPG 140
NIMLGQLAP GTG L L+ E K +E+ P+Y G TP
Sbjct: 1447 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRESTSPAYEPRSPGGYTPQ 1506
Query: 141 RSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYS 317
S T SPSY SPN SPT+ + +SP ++SPTS P YSP+SP YS
Sbjct: 1507 SPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYS 1560
Query: 318 PSSPGYSPTSPGYSPTSP 371
P+SP YSPTSP YSPTSP
Sbjct: 1561 PTSPSYSPTSPSYSPTSP 1578
Score = 65.1 bits (157), Expect = 2e-09
Identities = 42/92 (45%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS-SPGYSPSS 305
+P R + T SPSY SPN SP++ + +SP +SPTS +P YSP+S
Sbjct: 1644 SPSRPNYTPTSPSYSPTSPSYSPTSPNYTYSPSSPS-YSPTSPNPKYSPTSPNPTYSPTS 1702
Query: 306 PGYSPSSP----------GYSPTSPGYSPTSP 371
P YSP+SP YSPTSPGYSPTSP
Sbjct: 1703 PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSP 1734
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1584 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1637
Query: 360 PTSP 371
PTSP
Sbjct: 1638 PTSP 1641
Score = 62.8 bits (151), Expect = 1e-08
Identities = 44/85 (51%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTN-DAQFSPYVGGMAFSPTSSPGYSPSS 305
+P SP S Y SPSY SPN + SPT+ + +SP +SPTS P YSP+S
Sbjct: 1661 SPSYSPTSPN-YTYSPSSPSYSPTSPNPKYSPTSPNPTYSPT--SPKYSPTS-PTYSPTS 1716
Query: 306 PG---YSPSSPGYSPTSPGYSPTSP 371
P YSP+SPGYSPTSP YS TSP
Sbjct: 1717 PKGSTYSPTSPGYSPTSPTYSLTSP 1741
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1605 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1658
Query: 360 PTSP 371
PTSP
Sbjct: 1659 PTSP 1662
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1612 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1665
Query: 360 PTSP 371
PTSP
Sbjct: 1666 PTSP 1669
[39][TOP]
>UniRef100_Q8SSC4 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Encephalitozoon
cuniculi RepID=RPB1_ENCCU
Length = 1599
Score = 88.6 bits (218), Expect = 2e-16
Identities = 60/134 (44%), Positives = 79/134 (58%), Gaps = 11/134 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHE--- 173
NIM+GQLAP+GTG + L+ + L AI L P F +P+ TP +
Sbjct: 1390 NIMMGQLAPMGTGNIEIMLDMKKLDKAIPLSNPV------FKPNEPATPVISTPSSDSFS 1443
Query: 174 ---GMMSPSYM---LSPNL--RLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 329
G SP+++ S +L RLSPT+ + +SP ++SPTS P YSP+SP YSP+SP
Sbjct: 1444 ISSGNWSPTHLEMAYSRDLGERLSPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSP 1499
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1500 SYSPTSPSYSPTSP 1513
Score = 55.5 bits (132), Expect = 2e-06
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1519 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1572
[40][TOP]
>UniRef100_O96452 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae
RepID=O96452_ANTLO
Length = 1553
Score = 87.8 bits (216), Expect = 3e-16
Identities = 57/124 (45%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPG-RSPISGTPYHEGM 179
NIMLGQLAPIGTG L+ + L++ I + D L TP RSP+S Y
Sbjct: 1362 NIMLGQLAPIGTGNTICILDKKALRSVIPVA--KSFDFLGEVATPVIRSPVSDVRYGSSS 1419
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
+ P ++ + + T + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1420 V-PFSPIAAHGYAAGTTPSVYSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1475
Query: 360 PTSP 371
PTSP
Sbjct: 1476 PTSP 1479
[41][TOP]
>UniRef100_C5DXL0 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DXL0_ZYGRC
Length = 1744
Score = 87.8 bits (216), Expect = 3e-16
Identities = 61/140 (43%), Positives = 77/140 (55%), Gaps = 17/140 (12%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEML-KNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGM 179
N++LGQ+APIGTG + +++E L K E ++ +DG D G TP S +G E
Sbjct: 1427 NVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITELVDGQDGGATP-YSNENGLINTEVD 1485
Query: 180 MSPSYMLSPNLRLSPTNDAQ---FSPYVGGMA-------------FSPTSSPGYSPSSPG 311
+ M SP L S + DA F+ Y GG A F SSPG+SPSSP
Sbjct: 1486 VKDELMFSP-LVDSGSTDAMAGGFTAYGGGSASFGSYGDAPISPGFGGVSSPGFSPSSPT 1544
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSP SP
Sbjct: 1545 YSPTSPSYSPTSPSYSPPSP 1564
Score = 69.3 bits (168), Expect = 1e-10
Identities = 41/82 (50%), Positives = 50/82 (60%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
G +P S T SPSY P+ SPT+ + +SP ++SPTS P YSP+S
Sbjct: 1537 GFSPSSPTYSPTSPSYSPTSPSYS-PPSPNYSPTSPS-YSPT--SPSYSPTS-PSYSPTS 1591
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 1592 PSYSPTSPSYSPTSPSYSPTSP 1613
Score = 66.2 bits (160), Expect = 1e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPNY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 65.1 bits (157), Expect = 2e-09
Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSYSPTSPNYSPTSP-----SYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1584 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1637
Query: 360 PTSP 371
PTSP
Sbjct: 1638 PTSP 1641
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1591 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1644
Query: 360 PTSP 371
PTSP
Sbjct: 1645 PTSP 1648
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1598 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1651
Query: 360 PTSP 371
PTSP
Sbjct: 1652 PTSP 1655
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1605 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1658
Query: 360 PTSP 371
PTSP
Sbjct: 1659 PTSP 1662
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1612 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1665
Query: 360 PTSP 371
PTSP
Sbjct: 1666 PTSP 1669
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1619 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1672
Query: 360 PTSP 371
PTSP
Sbjct: 1673 PTSP 1676
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1626 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPSYS 1679
Query: 360 PTSP 371
PTSP
Sbjct: 1680 PTSP 1683
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1633 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPSYSPTSPSYS 1686
Query: 360 PTSP 371
PTSP
Sbjct: 1687 PTSP 1690
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1640 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPSYSPTSPSYSPTSPSYS 1693
Query: 360 PTSP 371
PTSP
Sbjct: 1694 PTSP 1697
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1658 SPTSPSYSPTSPNYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1711
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP SP YSP+SP
Sbjct: 1712 SYSPTSPNYSPGSPTYSPSSP 1732
[42][TOP]
>UniRef100_UPI00005A0B23 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 14 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B23
Length = 1653
Score = 87.4 bits (215), Expect = 4e-16
Identities = 61/127 (48%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEM---LKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHE 173
NIMLGQLAP GTG L L+ E + + P+Y G TP S T
Sbjct: 1427 NIMLGQLAPAGTGCFDLLLDAEKCGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1486
Query: 174 GMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP 350
SPSY SPN SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP
Sbjct: 1487 SPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSP 1540
Query: 351 GYSPTSP 371
YSPTSP
Sbjct: 1541 SYSPTSP 1547
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1553 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1606
Query: 360 PTSP 371
PTSP
Sbjct: 1607 PTSP 1610
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1574 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1627
Query: 360 PTSP 371
PTSP
Sbjct: 1628 PTSP 1631
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1581 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1634
Query: 360 PTSP 371
PTSP
Sbjct: 1635 PTSP 1638
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++PTS P YSP+SP YSP+SP Y+P SP YS
Sbjct: 1595 SPSYSPTSPSY--SPTSP-NYSP--SRPNYTPTS-PSYSPTSPSYSPTSPNYTPMSPNYS 1648
Query: 360 PTSP 371
PTSP
Sbjct: 1649 PTSP 1652
[43][TOP]
>UniRef100_UPI00005A0B22 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide
A isoform 13 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B22
Length = 1722
Score = 87.4 bits (215), Expect = 4e-16
Identities = 61/127 (48%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEM---LKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHE 173
NIMLGQLAP GTG L L+ E + + P+Y G TP S T
Sbjct: 1427 NIMLGQLAPAGTGCFDLLLDAEKCGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 1486
Query: 174 GMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP 350
SPSY SPN SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP
Sbjct: 1487 SPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSP 1540
Query: 351 GYSPTSP 371
YSPTSP
Sbjct: 1541 SYSPTSP 1547
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1553 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1606
Query: 360 PTSP 371
PTSP
Sbjct: 1607 PTSP 1610
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPSSP YSPTSP YS
Sbjct: 1574 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSSPKYSPTSPKYS 1627
Query: 360 PTSP 371
PTSP
Sbjct: 1628 PTSP 1631
Score = 62.0 bits (149), Expect = 2e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPSSP YSP+SP YSPTSP YS
Sbjct: 1581 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSSPKYSPTSPKYSPTSPTYS 1634
Query: 360 PTSP 371
PT+P
Sbjct: 1635 PTTP 1638
Score = 59.3 bits (142), Expect = 1e-07
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T SP+Y SP + SPT+ +SP ++PTS P YSP+SP
Sbjct: 1613 SPSSPKYSPTSPKYSPTSPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTS-PKYSPTSP 1666
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1667 TYSPTSPKYSPTSPTYSPTSP 1687
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1637 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1687
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1688 KGSTYSPTSPGYSPTSPTYSLTSP 1711
[44][TOP]
>UniRef100_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
RepID=C4VAM1_NOSCE
Length = 1612
Score = 87.0 bits (214), Expect = 6e-16
Identities = 59/131 (45%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSY-MDGLDFGMTPG-RSPISGTP-YHE 173
NIM+GQLAP+GTG + L+ L+ AI L P Y + +D TP SP+S +
Sbjct: 1367 NIMMGQLAPLGTGIGDILLDVSKLEFAIPLSKPDYNYEDVD---TPFIYSPVSESQSISS 1423
Query: 174 GMMSPSYML-----SPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYS 338
G SP+Y+ SP L L + ++SPTS P YSP+SP YSP+SP YS
Sbjct: 1424 GNWSPAYLAEESKYSPKLSLFSVGSPSYGS--ASPSYSPTS-PSYSPTSPSYSPTSPSYS 1480
Query: 339 PTSPGYSPTSP 371
PTSP YSPTSP
Sbjct: 1481 PTSPSYSPTSP 1491
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1497 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1550
Query: 360 PTSP 371
PTSP
Sbjct: 1551 PTSP 1554
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1504 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1557
Query: 360 PTSP 371
PTSP
Sbjct: 1558 PTSP 1561
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1511 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1564
Query: 360 PTSP 371
PTSP
Sbjct: 1565 PTSP 1568
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1518 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1571
Query: 360 PTSP 371
PTSP
Sbjct: 1572 PTSP 1575
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1525 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1578
Query: 360 PTS 368
PTS
Sbjct: 1579 PTS 1581
Score = 60.5 bits (145), Expect = 6e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTS YS
Sbjct: 1532 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSLSYS 1585
Query: 360 PTSP 371
PTSP
Sbjct: 1586 PTSP 1589
Score = 56.2 bits (134), Expect = 1e-06
Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+S YSPTSP YS
Sbjct: 1539 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSLSYSPTSPSYS 1592
Query: 360 PT 365
PT
Sbjct: 1593 PT 1594
[45][TOP]
>UniRef100_C8Z6G2 Rpo21p n=1 Tax=Saccharomyces cerevisiae EC1118 RepID=C8Z6G2_YEAST
Length = 1733
Score = 86.7 bits (213), Expect = 7e-16
Identities = 63/144 (43%), Positives = 80/144 (55%), Gaps = 21/144 (14%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEML-KNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGM 179
N++LGQ+APIGTG + +++E L K E ++ DG D G+TP S SG +
Sbjct: 1427 NVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTP-YSNESGLVNADLD 1485
Query: 180 MSPSYMLSPNLRLSPTNDAQ---FSPYVG---GMAFSP--------------TSSPGYSP 299
+ M SP L S +NDA F+ Y G G A SP SSPG+SP
Sbjct: 1486 VKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSP 1544
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1545 TSPTYSPTSPAYSPTSPSYSPTSP 1568
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1637 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1690
Query: 360 PTSP 371
PTSP
Sbjct: 1691 PTSP 1694
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1644 SPSYSPTSPSY--SPTSPA-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1697
Query: 360 PTSP 371
PTSP
Sbjct: 1698 PTSP 1701
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1574 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1627
Query: 360 PTSP 371
PTSP
Sbjct: 1628 PTSP 1631
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1581 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1634
Query: 360 PTSP 371
PTSP
Sbjct: 1635 PTSP 1638
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1588 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1641
Query: 360 PTSP 371
PTSP
Sbjct: 1642 PTSP 1645
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1595 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1648
Query: 360 PTSP 371
PTSP
Sbjct: 1649 PTSP 1652
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1602 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1655
Query: 360 PTSP 371
PTSP
Sbjct: 1656 PTSP 1659
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1609 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPAYS 1662
Query: 360 PTSP 371
PTSP
Sbjct: 1663 PTSP 1666
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1616 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPSYS 1669
Query: 360 PTSP 371
PTSP
Sbjct: 1670 PTSP 1673
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1623 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPSYSPTSPSYS 1676
Query: 360 PTSP 371
PTSP
Sbjct: 1677 PTSP 1680
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1630 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 1683
Query: 360 PTSP 371
PTSP
Sbjct: 1684 PTSP 1687
Score = 63.2 bits (152), Expect = 9e-09
Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SPSY SP +SP ++SPTS SP YSP+SP YSP+SP YSPT
Sbjct: 1651 SPSY--SPTSPAYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT 1706
Query: 345 SPGYSPTSP 371
SPGYSP SP
Sbjct: 1707 SPGYSPGSP 1715
Score = 57.8 bits (138), Expect = 4e-07
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSP SP YS
Sbjct: 1665 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPSYSPTSPGYSPGSPAYS 1718
Query: 360 P 362
P
Sbjct: 1719 P 1719
[46][TOP]
>UniRef100_C7GKZ2 Rpo21p n=2 Tax=Saccharomyces cerevisiae RepID=C7GKZ2_YEAS2
Length = 1733
Score = 86.7 bits (213), Expect = 7e-16
Identities = 63/144 (43%), Positives = 80/144 (55%), Gaps = 21/144 (14%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEML-KNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGM 179
N++LGQ+APIGTG + +++E L K E ++ DG D G+TP S SG +
Sbjct: 1427 NVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTP-YSNESGLVNADLD 1485
Query: 180 MSPSYMLSPNLRLSPTNDAQ---FSPYVG---GMAFSP--------------TSSPGYSP 299
+ M SP L S +NDA F+ Y G G A SP SSPG+SP
Sbjct: 1486 VKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSP 1544
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1545 TSPTYSPTSPAYSPTSPSYSPTSP 1568
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1637 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1690
Query: 360 PTSP 371
PTSP
Sbjct: 1691 PTSP 1694
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1644 SPSYSPTSPSY--SPTSPA-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1697
Query: 360 PTSP 371
PTSP
Sbjct: 1698 PTSP 1701
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1574 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1627
Query: 360 PTSP 371
PTSP
Sbjct: 1628 PTSP 1631
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1581 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1634
Query: 360 PTSP 371
PTSP
Sbjct: 1635 PTSP 1638
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1588 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1641
Query: 360 PTSP 371
PTSP
Sbjct: 1642 PTSP 1645
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1595 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1648
Query: 360 PTSP 371
PTSP
Sbjct: 1649 PTSP 1652
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1602 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1655
Query: 360 PTSP 371
PTSP
Sbjct: 1656 PTSP 1659
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1609 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPAYS 1662
Query: 360 PTSP 371
PTSP
Sbjct: 1663 PTSP 1666
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1616 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPSYS 1669
Query: 360 PTSP 371
PTSP
Sbjct: 1670 PTSP 1673
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1623 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPSYSPTSPSYS 1676
Query: 360 PTSP 371
PTSP
Sbjct: 1677 PTSP 1680
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1630 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 1683
Query: 360 PTSP 371
PTSP
Sbjct: 1684 PTSP 1687
Score = 63.2 bits (152), Expect = 9e-09
Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SPSY SP +SP ++SPTS SP YSP+SP YSP+SP YSPT
Sbjct: 1651 SPSY--SPTSPAYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT 1706
Query: 345 SPGYSPTSP 371
SPGYSP SP
Sbjct: 1707 SPGYSPGSP 1715
Score = 57.8 bits (138), Expect = 4e-07
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSP SP YS
Sbjct: 1665 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPSYSPTSPGYSPGSPAYS 1718
Query: 360 P 362
P
Sbjct: 1719 P 1719
[47][TOP]
>UniRef100_B3LH31 DNA-directed RNA polymerase n=1 Tax=Saccharomyces cerevisiae RM11-1a
RepID=B3LH31_YEAS1
Length = 1733
Score = 86.7 bits (213), Expect = 7e-16
Identities = 63/144 (43%), Positives = 80/144 (55%), Gaps = 21/144 (14%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEML-KNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGM 179
N++LGQ+APIGTG + +++E L K E ++ DG D G+TP S SG +
Sbjct: 1427 NVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTP-YSNESGLVNADLD 1485
Query: 180 MSPSYMLSPNLRLSPTNDAQ---FSPYVG---GMAFSP--------------TSSPGYSP 299
+ M SP L S +NDA F+ Y G G A SP SSPG+SP
Sbjct: 1486 VKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEPPTSPGFGVSSPGFSP 1544
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1545 TSPTYSPTSPAYSPTSPSYSPTSP 1568
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1637 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1690
Query: 360 PTSP 371
PTSP
Sbjct: 1691 PTSP 1694
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1644 SPSYSPTSPSY--SPTSPA-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1697
Query: 360 PTSP 371
PTSP
Sbjct: 1698 PTSP 1701
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1574 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1627
Query: 360 PTSP 371
PTSP
Sbjct: 1628 PTSP 1631
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1581 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1634
Query: 360 PTSP 371
PTSP
Sbjct: 1635 PTSP 1638
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1588 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1641
Query: 360 PTSP 371
PTSP
Sbjct: 1642 PTSP 1645
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1595 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1648
Query: 360 PTSP 371
PTSP
Sbjct: 1649 PTSP 1652
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1602 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1655
Query: 360 PTSP 371
PTSP
Sbjct: 1656 PTSP 1659
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1609 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPAYS 1662
Query: 360 PTSP 371
PTSP
Sbjct: 1663 PTSP 1666
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1616 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPSYS 1669
Query: 360 PTSP 371
PTSP
Sbjct: 1670 PTSP 1673
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1623 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPSYSPTSPSYS 1676
Query: 360 PTSP 371
PTSP
Sbjct: 1677 PTSP 1680
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1630 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 1683
Query: 360 PTSP 371
PTSP
Sbjct: 1684 PTSP 1687
Score = 63.2 bits (152), Expect = 9e-09
Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SPSY SP +SP ++SPTS SP YSP+SP YSP+SP YSPT
Sbjct: 1651 SPSY--SPTSPAYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT 1706
Query: 345 SPGYSPTSP 371
SPGYSP SP
Sbjct: 1707 SPGYSPGSP 1715
Score = 57.8 bits (138), Expect = 4e-07
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSP SP YS
Sbjct: 1665 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPSYSPTSPGYSPGSPAYS 1718
Query: 360 P 362
P
Sbjct: 1719 P 1719
[48][TOP]
>UniRef100_P04050 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Saccharomyces
cerevisiae RepID=RPB1_YEAST
Length = 1733
Score = 86.7 bits (213), Expect = 7e-16
Identities = 63/144 (43%), Positives = 80/144 (55%), Gaps = 21/144 (14%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEML-KNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGM 179
N++LGQ+APIGTG + +++E L K E ++ DG D G+TP S SG +
Sbjct: 1427 NVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTP-YSNESGLVNADLD 1485
Query: 180 MSPSYMLSPNLRLSPTNDAQ---FSPYVG---GMAFSP--------------TSSPGYSP 299
+ M SP L S +NDA F+ Y G G A SP SSPG+SP
Sbjct: 1486 VKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSP 1544
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1545 TSPTYSPTSPAYSPTSPSYSPTSP 1568
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1637 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1690
Query: 360 PTSP 371
PTSP
Sbjct: 1691 PTSP 1694
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1644 SPSYSPTSPSY--SPTSPA-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1697
Query: 360 PTSP 371
PTSP
Sbjct: 1698 PTSP 1701
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1574 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1627
Query: 360 PTSP 371
PTSP
Sbjct: 1628 PTSP 1631
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1581 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1634
Query: 360 PTSP 371
PTSP
Sbjct: 1635 PTSP 1638
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1588 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1641
Query: 360 PTSP 371
PTSP
Sbjct: 1642 PTSP 1645
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1595 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1648
Query: 360 PTSP 371
PTSP
Sbjct: 1649 PTSP 1652
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1602 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1655
Query: 360 PTSP 371
PTSP
Sbjct: 1656 PTSP 1659
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1609 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPAYS 1662
Query: 360 PTSP 371
PTSP
Sbjct: 1663 PTSP 1666
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1616 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPSYS 1669
Query: 360 PTSP 371
PTSP
Sbjct: 1670 PTSP 1673
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1623 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPAYSPTSPSYSPTSPSYS 1676
Query: 360 PTSP 371
PTSP
Sbjct: 1677 PTSP 1680
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1630 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 1683
Query: 360 PTSP 371
PTSP
Sbjct: 1684 PTSP 1687
Score = 63.2 bits (152), Expect = 9e-09
Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SPSY SP +SP ++SPTS SP YSP+SP YSP+SP YSPT
Sbjct: 1651 SPSY--SPTSPAYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPT 1706
Query: 345 SPGYSPTSP 371
SPGYSP SP
Sbjct: 1707 SPGYSPGSP 1715
Score = 57.8 bits (138), Expect = 4e-07
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSP SP YS
Sbjct: 1665 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPSYSPTSPGYSPGSPAYS 1718
Query: 360 P 362
P
Sbjct: 1719 P 1719
[49][TOP]
>UniRef100_UPI0000E48673 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 1 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48673
Length = 1880
Score = 85.9 bits (211), Expect = 1e-15
Identities = 62/148 (41%), Positives = 76/148 (51%), Gaps = 25/148 (16%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSY-----MDGLDFG--------MTPGR 143
NIMLG+LA +GTG L L+ E K+ +E+ + M G+ FG M+P
Sbjct: 1449 NIMLGKLAGLGTGSFDLLLDAEKCKHGMEIPMGMGAGLVGMPGMLFGAMGSPSQSMSPQM 1508
Query: 144 SPIS--GTPYHEGMMSP---SYMLSPNLRLSPTNDAQ------FSPYVGGMAFSPTS-SP 287
+P + TP H SP S M SP N +SP SP S SP
Sbjct: 1509 TPWNQGATPMHGASWSPMMGSGMTPGGPGFSPANSESTGFSPAYSPAWSPQPQSPGSPSP 1568
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
GYSP+SP YSP+SPGYSP SP YSPTSP
Sbjct: 1569 GYSPTSPSYSPTSPGYSPASPSYSPTSP 1596
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1581 SPGYSPASPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1631
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1632 SYSPTSPSYSPTSPSYSPTSP 1652
Score = 66.6 bits (161), Expect = 8e-10
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
G +P S T SPSY SP+ SPT+ + +SP ++SPTS P YSP+
Sbjct: 1583 GYSPASPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPT 1636
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPTSP 1659
Score = 66.2 bits (160), Expect = 1e-09
Identities = 45/94 (47%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 93 QLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAF 269
Q PSY G +P S T SPSY SPN S + SP ++
Sbjct: 1741 QSPSYSPGSP-SYSPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASP-----SY 1794
Query: 270 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPTS P YSPSSP YSP+SP YSPTSP YSP SP
Sbjct: 1795 SPTS-PKYSPSSPKYSPTSPTYSPTSPKYSPASP 1827
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPSSP YSPTSP YS
Sbjct: 1679 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPSSPKYSPTSPSYS 1732
Query: 360 PTSP 371
PTSP
Sbjct: 1733 PTSP 1736
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1616 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1669
Query: 360 PTSP 371
PTSP
Sbjct: 1670 PTSP 1673
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1623 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1676
Query: 360 PTSP 371
PTSP
Sbjct: 1677 PTSP 1680
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1630 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1683
Query: 360 PTSP 371
PTSP
Sbjct: 1684 PTSP 1687
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1637 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1690
Query: 360 PTSP 371
PTSP
Sbjct: 1691 PTSP 1694
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1644 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1697
Query: 360 PTSP 371
PTSP
Sbjct: 1698 PTSP 1701
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1651 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1704
Query: 360 PTSP 371
PTSP
Sbjct: 1705 PTSP 1708
Score = 62.4 bits (150), Expect = 2e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPSSP YSP+SP YSPTSP YS
Sbjct: 1686 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPSSPKYSPTSPSYSPTSPSYS 1739
Query: 360 PTSP 371
P SP
Sbjct: 1740 PQSP 1743
Score = 62.4 bits (150), Expect = 2e-08
Identities = 34/63 (53%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP +SP G ++SP SSP YSP+SP YSP+SP YSPTSP +SP
Sbjct: 1728 SPSY--SPTSPSYSPQSPSYSP--GSPSYSP-SSPKYSPTSPSYSPTSPSYSPTSPNFSP 1782
Query: 363 TSP 371
+SP
Sbjct: 1783 SSP 1785
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP +SPTS P YSP+SP YSP SP YSP SP YS
Sbjct: 1700 SPSYSPTSPSY--SPTSPS-YSP--SSPKYSPTS-PSYSPTSPSYSPQSPSYSPGSPSYS 1753
Query: 360 PTSP 371
P+SP
Sbjct: 1754 PSSP 1757
Score = 58.2 bits (139), Expect = 3e-07
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SP SSP YSP+SP YSP+SP YSP SP YS
Sbjct: 1693 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSP-SSPKYSPTSPSYSPTSPSYSPQSPSYS 1746
Query: 360 PTSP 371
P SP
Sbjct: 1747 PGSP 1750
Score = 57.0 bits (136), Expect = 6e-07
Identities = 42/89 (47%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
+P SP S T SPSY SP + ++SP +SPTS SP Y
Sbjct: 1777 SPNFSPSSPT---YSPASPSY--SPTSPKYSPSSPKYSPT--SPTYSPTSPKYSPASPTY 1829
Query: 294 SPSSPGYSPSSPGYSPTSP---GYSPTSP 371
SP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1830 SPTSPKYSPSSPTYSPTSPKGSTYSPTSP 1858
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/89 (42%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
+P S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1788 SPASPSYSPTSPKYSPSSPKY--SPTSPTYSPTSPKYSP--ASPTYSPTSPKYSPSSPTY 1843
Query: 294 SPSSPG---YSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1844 SPTSPKGSTYSPTSPSYSPTSPSYSPTSP 1872
[50][TOP]
>UniRef100_O77165 DNA-directed RNA polymerase (Fragment) n=1 Tax=Breviata anathema
RepID=O77165_9EUKA
Length = 1690
Score = 85.5 bits (210), Expect = 2e-15
Identities = 56/155 (36%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQ+AP+GTG L L+ +L+ A + + + D ++P S TPY M+
Sbjct: 1386 NIMLGQVAPVGTGTFDLLLDAALLREAYQFRTTTESDARGAIISPVGSSPQHTPYSSHML 1445
Query: 183 SPS---------YMLSPNLRLSPTNDAQ--------------------FSPYVGGMA--- 266
SP M SP++ +SP+ + P G A
Sbjct: 1446 SPQAQAIDNTYGLMFSPSVTMSPSGGFGMGMGMGMGDIPVPSSPGPFGYIPVPGSPAAAG 1505
Query: 267 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SP +SP YSP+SP YSP+SP YSP SP YSP SP
Sbjct: 1506 YSP-ASPAYSPASPAYSPASPAYSPASPAYSPASP 1539
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP YS
Sbjct: 1531 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYS 1584
Query: 360 PTSP 371
P SP
Sbjct: 1585 PASP 1588
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP YS
Sbjct: 1538 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYS 1591
Query: 360 PTSP 371
P SP
Sbjct: 1592 PASP 1595
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP YS
Sbjct: 1545 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYS 1598
Query: 360 PTSP 371
P SP
Sbjct: 1599 PASP 1602
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP YS
Sbjct: 1552 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYS 1605
Query: 360 PTSP 371
P SP
Sbjct: 1606 PASP 1609
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP YS
Sbjct: 1559 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYS 1612
Query: 360 PTSP 371
P SP
Sbjct: 1613 PASP 1616
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP YS
Sbjct: 1566 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYS 1619
Query: 360 PTSP 371
P SP
Sbjct: 1620 PASP 1623
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP YS
Sbjct: 1573 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYS 1626
Query: 360 PTSP 371
P SP
Sbjct: 1627 PASP 1630
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP YS
Sbjct: 1580 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYS 1633
Query: 360 PTSP 371
P SP
Sbjct: 1634 PASP 1637
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP YS
Sbjct: 1587 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYS 1640
Query: 360 PTSP 371
P SP
Sbjct: 1641 PASP 1644
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP YS
Sbjct: 1594 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYS 1647
Query: 360 PTSP 371
P SP
Sbjct: 1648 PASP 1651
Score = 56.6 bits (135), Expect = 8e-07
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP YSP SP Y
Sbjct: 1601 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYSPASPAYG 1654
Query: 360 PTSP 371
P SP
Sbjct: 1655 PASP 1658
Score = 56.6 bits (135), Expect = 8e-07
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP YSP+SP Y P SP YS
Sbjct: 1608 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYSPASPAYGPASPAYS 1661
Query: 360 PTSP 371
P SP
Sbjct: 1662 PASP 1665
Score = 56.6 bits (135), Expect = 8e-07
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP YSP+SP Y P+SP YSP SP YS
Sbjct: 1615 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYSPASPAYGPASPAYSPASPAYS 1668
Query: 360 PTSP 371
P SP
Sbjct: 1669 PASP 1672
Score = 56.6 bits (135), Expect = 8e-07
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SP + A +SP A+SP +SP Y P+SP YSP+SP YSP SP YS
Sbjct: 1622 SPAYSPASP--AYSPASPA-YSP--ASPAYSP-ASPAYGPASPAYSPASPAYSPASPAYS 1675
Query: 360 PTSP 371
P SP
Sbjct: 1676 PASP 1679
[51][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
RepID=Q6FQS9_CANGA
Length = 1715
Score = 83.6 bits (205), Expect = 6e-15
Identities = 58/150 (38%), Positives = 76/150 (50%), Gaps = 27/150 (18%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEML-KNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGM 179
N++LGQ+APIGTG + +++E L K E ++ DG D G TP + G+
Sbjct: 1427 NVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITELEDGQDGGATPYSN-------EAGL 1479
Query: 180 MSPSYMLSPNLRLSPTNDAQ--------FSPYVG---GMAFSP---------------TS 281
++ + L SP DA F+ Y G G A SP S
Sbjct: 1480 VNTDIDVKDELMFSPLVDAGSSDAMSGGFTAYGGAEYGGATSPFGAYGDAPASPGFGGVS 1539
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPG+SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1540 SPGFSPTSPAYSPTSPSYSPTSPSYSPTSP 1569
Score = 66.2 bits (160), Expect = 1e-09
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
G +P S T SPSY SP+ SPT+ + +SP ++SPTS P YSP+
Sbjct: 1542 GFSPTSPAYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPT 1595
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1596 SPSYSPTSPSYSPTSPSYSPTSP 1618
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1575 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1628
Query: 360 PTSP 371
PTSP
Sbjct: 1629 PTSP 1632
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1582 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1635
Query: 360 PTSP 371
PTSP
Sbjct: 1636 PTSP 1639
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1589 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1642
Query: 360 PTSP 371
PTSP
Sbjct: 1643 PTSP 1646
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1596 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1649
Query: 360 PTSP 371
PTSP
Sbjct: 1650 PTSP 1653
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1603 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1656
Query: 360 PTSP 371
PTSP
Sbjct: 1657 PTSP 1660
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1610 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1663
Query: 360 PTSP 371
PTSP
Sbjct: 1664 PTSP 1667
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1617 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1670
Query: 360 PTSP 371
PTSP
Sbjct: 1671 PTSP 1674
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1624 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1677
Query: 360 PTSP 371
PTSP
Sbjct: 1678 PTSP 1681
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1631 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 360 PTSP 371
PTSP
Sbjct: 1685 PTSP 1688
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1638 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 360 PTSP 371
PTSP
Sbjct: 1692 PTSP 1695
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1645 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 360 PTSP 371
P SP
Sbjct: 1699 PGSP 1702
Score = 54.7 bits (130), Expect = 3e-06
Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSP SP YS
Sbjct: 1652 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPGSPTYS 1705
Query: 360 P 362
P
Sbjct: 1706 P 1706
[52][TOP]
>UniRef100_Q6CL79 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
RepID=Q6CL79_KLULA
Length = 1720
Score = 83.6 bits (205), Expect = 6e-15
Identities = 55/143 (38%), Positives = 71/143 (49%), Gaps = 20/143 (13%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
N++LGQ+APIGTG + ++DE L + +G + G TP S SG E +
Sbjct: 1428 NVILGQMAPIGTGAFDVMIDDESLVKYMPEHKEVKTEGQEGGATP-YSNESGLANAEINV 1486
Query: 183 SPSYMLSPNLRLSPTN-----------------DAQFSPYVGGMA---FSPTSSPGYSPS 302
M SP + + + FS Y G F SSPG+SP+
Sbjct: 1487 KDELMFSPLVESGGADALAGGFTAYGGADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPT 1546
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SPGYSP+SP YSPTSP YSPTSP
Sbjct: 1547 SPGYSPTSPSYSPTSPSYSPTSP 1569
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1547 SPGYSPTSPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1597
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1598 SYSPTSPSYSPTSPSYSPTSP 1618
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1582 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1635
Query: 360 PTSP 371
PTSP
Sbjct: 1636 PTSP 1639
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1589 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1642
Query: 360 PTSP 371
PTSP
Sbjct: 1643 PTSP 1646
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1596 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1649
Query: 360 PTSP 371
PTSP
Sbjct: 1650 PTSP 1653
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1603 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1656
Query: 360 PTSP 371
PTSP
Sbjct: 1657 PTSP 1660
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1610 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1663
Query: 360 PTSP 371
PTSP
Sbjct: 1664 PTSP 1667
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1617 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1670
Query: 360 PTSP 371
PTSP
Sbjct: 1671 PTSP 1674
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1624 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1677
Query: 360 PTSP 371
PTSP
Sbjct: 1678 PTSP 1681
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1631 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 360 PTSP 371
PTSP
Sbjct: 1685 PTSP 1688
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1638 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 360 PTSP 371
PTSP
Sbjct: 1692 PTSP 1695
Score = 58.2 bits (139), Expect = 3e-07
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1645 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPQYS 1698
Query: 360 PTS 368
P S
Sbjct: 1699 PGS 1701
[53][TOP]
>UniRef100_Q75A34 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Eremothecium
gossypii RepID=RPB1_ASHGO
Length = 1745
Score = 83.6 bits (205), Expect = 6e-15
Identities = 57/151 (37%), Positives = 77/151 (50%), Gaps = 28/151 (18%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDE-MLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGM 179
N++LGQ+APIGTG + ++DE ++K E +L + ++ D G TP S G+
Sbjct: 1428 NVILGQMAPIGTGSFDVMIDDESLIKYMPEQKLSTAVEVNDGGATPYNSDA-------GL 1480
Query: 180 MSPSYMLSPNLRLSP-----TNDA-------------------QFSPYVGGMA---FSPT 278
++ + L SP T+DA FS Y G F
Sbjct: 1481 VNTKVDIKDELMFSPLVEAGTSDAIASGGFTAYGGADYGGATSPFSGYGNGPTSPGFGDV 1540
Query: 279 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SSPG+SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1541 SSPGFSPTSPAYSPTSPSYSPTSPSYSPTSP 1571
Score = 67.8 bits (164), Expect = 4e-10
Identities = 44/92 (47%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P + D G +P S T SPSY SP+ SPT+ + +SP ++SP
Sbjct: 1535 PGFGDVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSP 1589
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1590 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1620
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1584 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1637
Query: 360 PTSP 371
PTSP
Sbjct: 1638 PTSP 1641
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1591 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1644
Query: 360 PTSP 371
PTSP
Sbjct: 1645 PTSP 1648
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1598 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1651
Query: 360 PTSP 371
PTSP
Sbjct: 1652 PTSP 1655
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1605 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1658
Query: 360 PTSP 371
PTSP
Sbjct: 1659 PTSP 1662
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1612 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1665
Query: 360 PTSP 371
PTSP
Sbjct: 1666 PTSP 1669
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1619 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1672
Query: 360 PTSP 371
PTSP
Sbjct: 1673 PTSP 1676
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1626 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1679
Query: 360 PTSP 371
PTSP
Sbjct: 1680 PTSP 1683
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1633 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1686
Query: 360 PTSP 371
PTSP
Sbjct: 1687 PTSP 1690
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1640 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1693
Query: 360 PTSP 371
PTSP
Sbjct: 1694 PTSP 1697
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1647 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1700
Query: 360 PTSP 371
PTSP
Sbjct: 1701 PTSP 1704
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 61.2 bits (147), Expect = 3e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPQYS 1721
Query: 360 PTSP 371
P SP
Sbjct: 1722 PRSP 1725
Score = 55.5 bits (132), Expect = 2e-06
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSP SP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPQYSPRSPSYS 1728
Query: 360 PT 365
P+
Sbjct: 1729 PS 1730
[54][TOP]
>UniRef100_UPI00005A0B2B PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 22 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2B
Length = 1892
Score = 83.2 bits (204), Expect = 8e-15
Identities = 62/164 (37%), Positives = 76/164 (46%), Gaps = 41/164 (25%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISG-----TPY 167
NIMLGQLAP GTG L L+ E K +E+ G+ FG P SP+ G TP+
Sbjct: 1458 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPATGMFFGSAP--SPMGGISPAMTPW 1515
Query: 168 HEGMMSPSYMLSPNL--------------------RLSPTNDAQFSPYVG-----GMAFS 272
++G SP++ SP +SP G G A S
Sbjct: 1516 NQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGGAMS 1575
Query: 273 PTSSP-----------GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P+ SP GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1576 PSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1619
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1583 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1637
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1638 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1668
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1639 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1692
Query: 360 PTSP 371
PTSP
Sbjct: 1693 PTSP 1696
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1646 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1699
Query: 360 PTSP 371
PTSP
Sbjct: 1700 PTSP 1703
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1660 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1713
Query: 360 PTSP 371
PTSP
Sbjct: 1714 PTSP 1717
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1667 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1720
Query: 360 PTSP 371
PTSP
Sbjct: 1721 PTSP 1724
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1674 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1727
Query: 360 PTSP 371
PTSP
Sbjct: 1728 PTSP 1731
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/72 (54%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTS------SPGYSPSSPGYSPSSPGY 335
SPSY SPN S N SP ++SPTS SP YSPSSP Y+P+SP Y
Sbjct: 1723 SPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 1782
Query: 336 SPTSPGYSPTSP 371
SPTSP YSPTSP
Sbjct: 1783 SPTSPKYSPTSP 1794
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1695 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1748
Query: 360 PTSP 371
PTSP
Sbjct: 1749 PTSP 1752
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1702 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1755
Query: 360 PTSP 371
PTSP
Sbjct: 1756 PTSP 1759
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1776 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1831
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1832 SPTSPTYSPTSPKYSPTSPTYSPTSP 1857
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1807 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1857
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1858 KGSTYSPTSPGYSPTSPTYSLTSP 1881
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1800 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1854
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1855 TSPKGSTYSPTSPGYSPTSP 1874
[55][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
Length = 1752
Score = 83.2 bits (204), Expect = 8e-15
Identities = 61/175 (34%), Positives = 80/175 (45%), Gaps = 52/175 (29%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKN-AIELQLPSYMDGLDFGMTPGRSPI-SGTPY--- 167
NIMLGQLAP+GTG +YL+ +ML N ++ +P+ GM + P +GTPY
Sbjct: 1433 NIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGS---GMGTSQLPEGAGTPYERS 1489
Query: 168 -----------------------------------------HEGMMSPSYMLSPNLRLSP 224
++G+ SP Y + +SP
Sbjct: 1490 PMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSP 1549
Query: 225 ---TNDAQFSPYVGGMAFSPT---SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SP G + SP SSP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1550 GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1604
Score = 64.7 bits (156), Expect = 3e-09
Identities = 41/92 (44%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+YM +P S T SPSY SP+ + + + SP ++SP
Sbjct: 1569 PAYMPSSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSP-----SYSP 1622
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1623 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653
Score = 64.7 bits (156), Expect = 3e-09
Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1596 SPSYSPTSPS---YSATSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1646
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSP 1667
Score = 64.7 bits (156), Expect = 3e-09
Identities = 41/81 (50%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1600 SPTSPSYSATSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1653
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSP 1674
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1624 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1677
Query: 360 PTSP 371
PTSP
Sbjct: 1678 PTSP 1681
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1631 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 360 PTSP 371
PTSP
Sbjct: 1685 PTSP 1688
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1638 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 360 PTSP 371
PTSP
Sbjct: 1692 PTSP 1695
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1645 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 360 PTSP 371
PTSP
Sbjct: 1699 PTSP 1702
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1652 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1705
Query: 360 PTSP 371
PTSP
Sbjct: 1706 PTSP 1709
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1659 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1712
Query: 360 PTSP 371
PTSP
Sbjct: 1713 PTSP 1716
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1666 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1719
Query: 360 PTSP 371
PTSP
Sbjct: 1720 PTSP 1723
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1673 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1726
Query: 360 PTSP 371
PTSP
Sbjct: 1727 PTSP 1730
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1680 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1733
Query: 360 PTSP 371
PTSP
Sbjct: 1734 PTSP 1737
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1687 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1740
Query: 360 PTSP 371
PTSP
Sbjct: 1741 PTSP 1744
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1694 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1747
Query: 360 PTSP 371
PTSP
Sbjct: 1748 PTSP 1751
[56][TOP]
>UniRef100_UPI00017B0A92 UPI00017B0A92 related cluster n=1 Tax=Tetraodon nigroviridis
RepID=UPI00017B0A92
Length = 1714
Score = 82.8 bits (203), Expect = 1e-14
Identities = 64/178 (35%), Positives = 77/178 (43%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1434 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGSTGMFFGSAPSPMSGMSPA 1493
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1494 MTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1553
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SPGYSP+SP YSPTSP YSPTSP
Sbjct: 1554 PASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSPTSPSYSPTSP 1611
Score = 67.8 bits (164), Expect = 4e-10
Identities = 45/85 (52%), Positives = 53/85 (62%), Gaps = 8/85 (9%)
Frame = +3
Query: 141 RSPISGTPYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS-----SPGYS 296
RSP TP G SPSY SP+ SPT+ + +SP ++SPTS SP YS
Sbjct: 1580 RSPGGYTPQSPGYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPSGPTSPSYS 1634
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1635 PTSPSYSPTSPSYSPTSPSYSPTSP 1659
Score = 59.7 bits (143), Expect = 1e-07
Identities = 40/92 (43%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGM---A 266
P+Y G TP S T SPSY SP+ SPT+ + G +
Sbjct: 1575 PAYEPRSPGGYTPQSPGYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSGPTSPS 1632
Query: 267 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
+SPTS P YSP+SP YSP+SP YSPTSP Y+P
Sbjct: 1633 YSPTS-PSYSPTSPSYSPTSPSYSPTSPNYTP 1663
Score = 58.5 bits (140), Expect = 2e-07
Identities = 45/101 (44%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Frame = +3
Query: 99 PSYMDGLDFGMT-PGRSPISG----TPYHEGMMSPSYM-LSPNL----RLSPTNDAQFSP 248
PSY G T P SP S T SPSY SPN +L PT+ ++P
Sbjct: 1618 PSYSPTSPSGPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYTPPHQLVPTSP--YTP 1675
Query: 249 YVGGMAFSPTSSPGYSPSSPG---YSPSSPGYSPTSPGYSP 362
++ +SP +SP YSP+SP YSP+SPGYSPTSP YSP
Sbjct: 1676 HIS--VYSPPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1714
[57][TOP]
>UniRef100_C5E245 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5E245_LACTC
Length = 1740
Score = 82.8 bits (203), Expect = 1e-14
Identities = 59/152 (38%), Positives = 76/152 (50%), Gaps = 29/152 (19%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ-LPSYMDGLDFGMTPGRSPISGTPYHEGM 179
N++LGQ+APIGTG + +++E L + Q + DG D TP + SG +
Sbjct: 1428 NVLLGQVAPIGTGAFDVMIDEESLVKFMPQQKMEEVADGHDGARTPYNNE-SGLVNADID 1486
Query: 180 MSPSYMLSPNLRLSPTN-------------------------DAQFSPYVGGMA---FSP 275
+ M SP + T+ DA SP GG+A FSP
Sbjct: 1487 VKDELMFSPLVDSGSTDAMSGGFTAYGGADYGGASSPFSGYGDAPTSPGFGGVASPGFSP 1546
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1547 TS-PAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1577
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1576 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1629
Query: 360 PTSP 371
PTSP
Sbjct: 1630 PTSP 1633
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1583 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1636
Query: 360 PTSP 371
PTSP
Sbjct: 1637 PTSP 1640
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1590 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1643
Query: 360 PTSP 371
PTSP
Sbjct: 1644 PTSP 1647
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1597 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1650
Query: 360 PTSP 371
PTSP
Sbjct: 1651 PTSP 1654
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1604 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1657
Query: 360 PTSP 371
PTSP
Sbjct: 1658 PTSP 1661
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1611 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1664
Query: 360 PTSP 371
PTSP
Sbjct: 1665 PTSP 1668
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1618 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1671
Query: 360 PTSP 371
PTSP
Sbjct: 1672 PTSP 1675
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1625 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1678
Query: 360 PTSP 371
PTSP
Sbjct: 1679 PTSP 1682
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1632 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1685
Query: 360 PTSP 371
PTSP
Sbjct: 1686 PTSP 1689
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1639 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1692
Query: 360 PTSP 371
PTSP
Sbjct: 1693 PTSP 1696
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1646 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1699
Query: 360 PTSP 371
PTSP
Sbjct: 1700 PTSP 1703
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1660 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1713
Query: 360 PTSP 371
P SP
Sbjct: 1714 PGSP 1717
Score = 58.9 bits (141), Expect = 2e-07
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSP SP YS
Sbjct: 1667 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPGSPSYS 1720
Query: 360 PTSP 371
P SP
Sbjct: 1721 PGSP 1724
[58][TOP]
>UniRef100_O96446 DNA-directed RNA polymerase n=1 Tax=Vairimorpha necatrix
RepID=O96446_9MICR
Length = 1605
Score = 82.4 bits (202), Expect = 1e-14
Identities = 58/126 (46%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSY-MDGLDFGMTPG-RSPIS-GTPYHE 173
NIM+G LAP+GTG L L+ L AI L P Y + +D TP SP+S
Sbjct: 1390 NIMMGHLAPLGTGIGNLLLDVSKLDKAIPLSKPEYNYEEVD---TPFIHSPVSENLSISS 1446
Query: 174 GMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 353
G SP+Y++ N R +P +SPTS P YSP+SP YSP+SP YSPTSP
Sbjct: 1447 GNWSPAYLVEGN-RYAPKTSL----------YSPTS-PTYSPTSPTYSPTSPTYSPTSPT 1494
Query: 354 YSPTSP 371
YSPTSP
Sbjct: 1495 YSPTSP 1500
Score = 65.1 bits (157), Expect = 2e-09
Identities = 43/81 (53%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S T SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1499 SPTYSPTSPT---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1549
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1550 SYSPTSPSYSPTSPSYSPTSP 1570
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1527 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1580
Query: 360 PTSP 371
PTSP
Sbjct: 1581 PTSP 1584
Score = 60.1 bits (144), Expect = 7e-08
Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1534 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1587
Query: 360 PT 365
PT
Sbjct: 1588 PT 1589
[59][TOP]
>UniRef100_O94231 RNA polymerase II largest subunit (Fragment) n=1 Tax=Kluyveromyces
lactis RepID=O94231_KLULA
Length = 414
Score = 82.0 bits (201), Expect = 2e-14
Identities = 55/143 (38%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
N++LGQ+APIGTG + ++DE L +G + G TP S SG E +
Sbjct: 122 NVILGQIAPIGTGAFDVMIDDESLVKYQPEHKEVKTEGQEGGATP-YSNESGLANAEINV 180
Query: 183 SPSYMLSPNLRLSPTN-----------------DAQFSPYVGGMA---FSPTSSPGYSPS 302
M SP + + + FS Y G F SSPG+SP+
Sbjct: 181 KDELMFSPLVESGGADALAGGFTAYGGADYGSATSPFSGYGNGPTSPGFGEVSSPGFSPT 240
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SPGYSP+SP YSPTSP YSPTSP
Sbjct: 241 SPGYSPTSPSYSPTSPSYSPTSP 263
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 241 SPGYSPTSPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 291
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 292 SYSPTSPSYSPTSPSYSPTSP 312
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 276 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 329
Query: 360 PTSP 371
PTSP
Sbjct: 330 PTSP 333
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 283 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 336
Query: 360 PTSP 371
PTSP
Sbjct: 337 PTSP 340
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 290 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 343
Query: 360 PTSP 371
PTSP
Sbjct: 344 PTSP 347
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 297 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 350
Query: 360 PTSP 371
PTSP
Sbjct: 351 PTSP 354
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 304 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 357
Query: 360 PTSP 371
PTSP
Sbjct: 358 PTSP 361
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 311 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 364
Query: 360 PTSP 371
PTSP
Sbjct: 365 PTSP 368
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 318 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 371
Query: 360 PTSP 371
PTSP
Sbjct: 372 PTSP 375
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 325 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 378
Query: 360 PTSP 371
PTSP
Sbjct: 379 PTSP 382
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 332 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 385
Query: 360 PTSP 371
PTSP
Sbjct: 386 PTSP 389
Score = 58.2 bits (139), Expect = 3e-07
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 339 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPQYS 392
Query: 360 PTS 368
P S
Sbjct: 393 PGS 395
[60][TOP]
>UniRef100_UPI00019270BB PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
isoform 1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019270BB
Length = 2041
Score = 81.6 bits (200), Expect = 2e-14
Identities = 70/203 (34%), Positives = 88/203 (43%), Gaps = 80/203 (39%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQL---------------------------- 98
NI+LGQL PIGTG L L+ E K +E+ L
Sbjct: 1459 NIILGQLPPIGTGCFNLMLDAEKCKEGMEIPLNIGEGHGMMPGGGVFFGSAASPSNAMSP 1518
Query: 99 ----------PSYMDG----LDFGMTPGRSPISGTPYHE-------GMMSPS-------- 191
P Y DG L GMTPG + S + + + G SP+
Sbjct: 1519 QMTPWNQGHTPGYGDGWSPALGSGMTPGAASFSPSAHSDASGFSPAGGFSPAWSPQDSMS 1578
Query: 192 --------YMLSPNLR-LSPT---NDAQFSPYVGGMA-----FSPTS------SPGYSPS 302
Y+ SP+ +SP+ N F+P M+ +SPTS SPGYSP+
Sbjct: 1579 LGSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQSPAMSPSSPGYSPTSPLYSPTSPGYSPT 1638
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPGYSPTSP YSPTSP
Sbjct: 1639 SPSYSPTSPGYSPTSPSYSPTSP 1661
Score = 66.6 bits (161), Expect = 8e-10
Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+PG SP S + P G SPSY SP+ SPT+ + +SP ++SPTS P YS
Sbjct: 1632 SPGYSPTSPSYSPTSPGYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYS 1685
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1686 PTSPSYSPTSPSYSPTSPSYSPTSP 1710
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1646 SPGYSPTSPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1696
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1697 SYSPTSPSYSPTSPSYSPTSP 1717
Score = 66.2 bits (160), Expect = 1e-09
Identities = 45/85 (52%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISG--TPYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+PG SP S +P G SPSY SP SPT+ + +SP ++SPTS P YS
Sbjct: 1618 SPGYSPTSPLYSPTSPGYSPTSPSYSPTSPGY--SPTSPS-YSPT--SPSYSPTS-PSYS 1671
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1672 PTSPSYSPTSPSYSPTSPSYSPTSP 1696
Score = 65.5 bits (158), Expect = 2e-09
Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ ++SP +SPTS P YSPSSP YSPSSP YSPTSP YS
Sbjct: 1800 SPSYSPTSP--KYSPTSP-KYSPT--SPKYSPTS-PSYSPSSPSYSPSSPNYSPTSPTYS 1853
Query: 360 PTSP 371
PTSP
Sbjct: 1854 PTSP 1857
Score = 63.9 bits (154), Expect = 5e-09
Identities = 42/80 (52%), Positives = 49/80 (61%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P SP S T SP+Y SPT+ A +SP A+SPTS P YSP+SP
Sbjct: 1842 SPNYSPTSPT---YSPTSPTY--------SPTSPA-YSPT--SPAYSPTS-PAYSPTSPV 1886
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1887 YSPTSPAYSPTSPKYSPTSP 1906
Score = 63.5 bits (153), Expect = 7e-09
Identities = 37/66 (56%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 353
SPSY SPN + + SP A+SPTS P YSP+SP YSP+SP YSPTSP
Sbjct: 1835 SPSYSPSSPNYSPTSPTYSPTSPTYSPTSPAYSPTS-PAYSPTSPAYSPTSPVYSPTSPA 1893
Query: 354 YSPTSP 371
YSPTSP
Sbjct: 1894 YSPTSP 1899
Score = 63.2 bits (152), Expect = 9e-09
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSP 341
SPSY SP+ SPT+ + +SP ++SPTS SP YSP+SP YSP+SP YSP
Sbjct: 1702 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPIYSPTSPSYSPTSPSYSPTSPSYSP 1756
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1757 TSPKYSPTSP 1766
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/63 (58%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SPT+ + +SP +SPTS P YSP SP YSPSSP YSPTSP YSP
Sbjct: 1765 SPSY--------SPTSPS-YSP--SSPQYSPTS-PAYSPQSPSYSPSSPSYSPTSPKYSP 1812
Query: 363 TSP 371
TSP
Sbjct: 1813 TSP 1815
Score = 63.2 bits (152), Expect = 9e-09
Identities = 44/94 (46%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 93 QLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAF 269
Q PSY +P S T SP Y SP + SPT+ + +SP ++
Sbjct: 1792 QSPSY--------SPSSPSYSPTSPKYSPTSPKYSPTSP--KYSPTSPS-YSP--SSPSY 1838
Query: 270 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP SSP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1839 SP-SSPNYSPTSPTYSPTSPTYSPTSPAYSPTSP 1871
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1716 SPSYSPTSPSY--SPTSPI-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPKYSPTSPSYS 1769
Query: 360 PTSP 371
PTSP
Sbjct: 1770 PTSP 1773
Score = 61.6 bits (148), Expect = 3e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP +SPTS P YSP+SP YSPSSP YSPTSP YS
Sbjct: 1737 SPSYSPTSPSY--SPTSPS-YSPT--SPKYSPTS-PSYSPTSPSYSPSSPQYSPTSPAYS 1790
Query: 360 PTSP 371
P SP
Sbjct: 1791 PQSP 1794
Score = 61.2 bits (147), Expect = 3e-08
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDA------QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
SPSY S + + SPT+ A +SP ++SPTS P YSP+SP YSP+SP YSPT
Sbjct: 1772 SPSYSPS-SPQYSPTSPAYSPQSPSYSP--SSPSYSPTS-PKYSPTSPKYSPTSPKYSPT 1827
Query: 345 SPGYSPTSP 371
SP YSP+SP
Sbjct: 1828 SPSYSPSSP 1836
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ +SP A+SPTS+ GYSP+SP YSPSSP YSPT+P YS
Sbjct: 1898 SPKYSPTSP--KYSPTSPI-YSPT--SPAYSPTST-GYSPTSPEYSPSSPKYSPTTPQYS 1951
Query: 360 PTSP 371
PTSP
Sbjct: 1952 PTSP 1955
Score = 60.1 bits (144), Expect = 7e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYMLSPNLRL-SPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP + SPT+ A +SP +SPTS P YSP+SP YSP+SP YSPTS GYS
Sbjct: 1877 SPAY--SPTSPVYSPTSPA-YSPT--SPKYSPTS-PKYSPTSPIYSPTSPAYSPTSTGYS 1930
Query: 360 PTSP 371
PTSP
Sbjct: 1931 PTSP 1934
Score = 60.1 bits (144), Expect = 7e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYMLSPNLRL-SPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ A +SP G +SPTS P YSPSSP YSP++P YSPTSP YS
Sbjct: 1905 SPKY--SPTSPIYSPTSPA-YSPTSTG--YSPTS-PEYSPSSPKYSPTTPQYSPTSPKYS 1958
Query: 360 PTSP 371
P SP
Sbjct: 1959 PASP 1962
[61][TOP]
>UniRef100_UPI0001796DD3 PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase II subunit A) (DNA-directed RNA polymerase III
largest subunit) n=1 Tax=Equus caballus
RepID=UPI0001796DD3
Length = 1834
Score = 81.3 bits (199), Expect = 3e-14
Identities = 66/185 (35%), Positives = 80/185 (43%), Gaps = 62/185 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGM--------------MSPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNVGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM---AFSPTS--------------SPGYSPSSPGYSPSSPGYSPTSPGY 356
+ + P GG ++SPTS SP YSP+SP YSP+SP YSPTSP Y
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY 1636
Query: 357 SPTSP 371
SPTSP
Sbjct: 1637 SPTSP 1641
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 64.7 bits (156), Expect = 3e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N SP +SPTS P YSP++P YSP+SP YSPTSPGYS
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPTSPN-----YSPTS-PSYSPTTPSYSPTSPSYSPTSPGYS 1812
Query: 360 PTSP 371
PTSP
Sbjct: 1813 PTSP 1816
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 63.5 bits (153), Expect = 7e-09
Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N + SP ++SPT+ P YSP+SP YSP+SPGYSPTSP YS
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSP-----SYSPTT-PSYSPTSPSYSPTSPGYSPTSPTYS 1819
Query: 360 PTSP 371
TSP
Sbjct: 1820 LTSP 1823
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1784
Query: 360 PTSP 371
PTSP
Sbjct: 1785 PTSP 1788
Score = 54.7 bits (130), Expect = 3e-06
Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP S T SP+Y SPN SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1756 TPTSPSYSPTSPSYSPTSPNYTPTSPNY--SPTSPS-YSPTTP--SYSPTS-PSYSPTSP 1809
Query: 309 GYSPSSPGYSPTSPGYSP 362
GYSP+SP YS TSP SP
Sbjct: 1810 GYSPTSPTYSLTSPAISP 1827
[62][TOP]
>UniRef100_UPI0000546D90 PREDICTED: im:7136071 isoform 1 n=1 Tax=Danio rerio
RepID=UPI0000546D90
Length = 1972
Score = 81.3 bits (199), Expect = 3e-14
Identities = 70/196 (35%), Positives = 83/196 (42%), Gaps = 73/196 (37%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLD-- 122
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1454 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFGSAPSPMSGMSPA 1513
Query: 123 --------------------FGMTPGR----------------------SPISGTPYHEG 176
GMTPG SP G+P G
Sbjct: 1514 MTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1573
Query: 177 -----MMSPSYM------LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS 323
+ SP Y+ LSPN SPT+ A + P G ++P SPGYSP+SP YSP+
Sbjct: 1574 PASPYIPSPGYITLHFGALSPNY--SPTSPA-YEPRSPGGGYTP-QSPGYSPTSPSYSPT 1629
Query: 324 SPGYSPTSPGYSPTSP 371
SP YSPTSP YSPTSP
Sbjct: 1630 SPSYSPTSPNYSPTSP 1645
Score = 68.9 bits (167), Expect = 2e-10
Identities = 44/83 (53%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
G TP S T SPSY SPN SPT+ + +SP ++SPTS P YSP+
Sbjct: 1611 GYTPQSPGYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSPTS-PSYSPT 1664
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1665 SPSYSPTSPSYSPTSPSYSPTSP 1687
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/81 (53%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Frame = +3
Query: 141 RSPISG-TPYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
RSP G TP G SPSY SP+ + N + SP ++SPTS P YSP+SP
Sbjct: 1606 RSPGGGYTPQSPGYSPTSPSYSPTSPSYSPTSPNYSPTSP-----SYSPTS-PSYSPTSP 1659
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1660 SYSPTSPSYSPTSPSYSPTSP 1680
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1658 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1711
Query: 360 PTSP 371
PTSP
Sbjct: 1712 PTSP 1715
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1665 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1718
Query: 360 PTSP 371
PTSP
Sbjct: 1719 PTSP 1722
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1672 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1725
Query: 360 PTSP 371
PTSP
Sbjct: 1726 PTSP 1729
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1679 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1732
Query: 360 PTSP 371
PTSP
Sbjct: 1733 PTSP 1736
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1686 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1739
Query: 360 PTSP 371
PTSP
Sbjct: 1740 PTSP 1743
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1693 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1746
Query: 360 PTSP 371
PTSP
Sbjct: 1747 PTSP 1750
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1700 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1753
Query: 360 PTSP 371
PTSP
Sbjct: 1754 PTSP 1757
Score = 63.9 bits (154), Expect = 5e-09
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + + + SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1749 SPSYSPTSPNYTPTSPSYSPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1802
Query: 360 PTSP 371
PTSP
Sbjct: 1803 PTSP 1806
Score = 63.5 bits (153), Expect = 7e-09
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1742 SPSYSPTSPSYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1795
Query: 360 PTSP 371
PTSP
Sbjct: 1796 PTSP 1799
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1707 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYT 1760
Query: 360 PTSP 371
PTSP
Sbjct: 1761 PTSP 1764
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1714 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYTPTSPSYS 1767
Query: 360 PTSP 371
PTSP
Sbjct: 1768 PTSP 1771
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1721 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYTPTSPSYSPTSPSYS 1774
Query: 360 PTSP 371
PTSP
Sbjct: 1775 PTSP 1778
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P Y+P+SP YSP+SP YSPTSP YS
Sbjct: 1728 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYTPTSPSYSPTSPSYSPTSPSYS 1781
Query: 360 PTSP 371
PTSP
Sbjct: 1782 PTSP 1785
Score = 60.5 bits (145), Expect = 6e-08
Identities = 40/96 (41%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTS------- 281
TP S T SPSY SPN + N + SP ++SP+S
Sbjct: 1760 TPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPSSPRYTPQS 1819
Query: 282 ------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSPSSP YSP+SP Y+PTSP YSP+SP
Sbjct: 1820 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSP 1855
Score = 60.5 bits (145), Expect = 6e-08
Identities = 40/91 (43%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS----- 281
TP S T SPSY S P + +SP ++SPTS
Sbjct: 1788 TPTSPNYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTP 1845
Query: 282 -SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSPSSP Y+P+SP YSPTSP YSPTSP
Sbjct: 1846 TSPSYSPSSPEYTPTSPKYSPTSPKYSPTSP 1876
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1858 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPTYTPTSPKY 1913
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1914 SPTSPTYSPTSPKYSPTSPTYSPTSP 1939
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1826 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1880
Query: 363 TSP 371
TSP
Sbjct: 1881 TSP 1883
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1882 SPTY--SPTTPKYSPTSPT-YSPT--SPTYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1936
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1937 TSPKGSTYSPTSPGYSPTSP 1956
Score = 53.1 bits (126), Expect = 9e-06
Identities = 41/81 (50%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP+Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1889 TPKYSPTSPT---YSPTSPTYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1939
Query: 309 G---YSPSSPGYSPTSPGYSP 362
YSP+SPGYSPTSP YSP
Sbjct: 1940 KGSTYSPTSPGYSPTSPTYSP 1960
[63][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
RepID=A5E6J4_LODEL
Length = 1745
Score = 81.3 bits (199), Expect = 3e-14
Identities = 57/155 (36%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNA------------------IELQLPSYMDGLDFG 128
N+MLGQ+AP+GTG + ++D+ML+ A +L++ +D G
Sbjct: 1423 NVMLGQMAPLGTGSFDVMVDDKMLQQAPTNVAMVEVADDGGATPYRDLEMEDEQIVVDEG 1482
Query: 129 -------------MTPGRSPISGTPYHEGMMSP-SYMLSPNLRLSPTNDAQFSPYVGGMA 266
M G + G P G SP SY +P + SP G
Sbjct: 1483 AGFSPVHNAMSDNMNGGLTSYGGQPTSPGNTSPFSYGTTPGYGGTSPGYGGTSP---GYG 1539
Query: 267 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SPT SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1540 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1573
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------ 281
+G +P S T SPSY SP+ SPT+ + +SP ++SPTS
Sbjct: 1538 YGYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPSYSPT 1592
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1593 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1622
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1579 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1632
Query: 360 PTSP 371
PTSP
Sbjct: 1633 PTSP 1636
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1586 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1639
Query: 360 PTSP 371
PTSP
Sbjct: 1640 PTSP 1643
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1593 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1646
Query: 360 PTSP 371
PTSP
Sbjct: 1647 PTSP 1650
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1600 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1653
Query: 360 PTSP 371
PTSP
Sbjct: 1654 PTSP 1657
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1607 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1660
Query: 360 PTSP 371
PTSP
Sbjct: 1661 PTSP 1664
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1614 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1667
Query: 360 PTSP 371
PTSP
Sbjct: 1668 PTSP 1671
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1621 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1674
Query: 360 PTSP 371
PTSP
Sbjct: 1675 PTSP 1678
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1628 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1681
Query: 360 PTSP 371
PTSP
Sbjct: 1682 PTSP 1685
Score = 63.5 bits (153), Expect = 7e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1635 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPQYS 1688
Query: 360 PTSP 371
PTSP
Sbjct: 1689 PTSP 1692
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1642 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPQYSPTSPQYS 1695
Query: 360 PTSP 371
PTSP
Sbjct: 1696 PTSP 1699
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1649 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPTSPSYS 1702
Query: 360 PTSP 371
PTSP
Sbjct: 1703 PTSP 1706
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1656 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PQYSPTSPQYSPTSPSYSPTSPSYS 1709
Query: 360 PTSP 371
PTSP
Sbjct: 1710 PTSP 1713
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1670 SPSYSPTSPSY--SPTSP-QYSPT--SPQYSPTS-PSYSPTSPSYSPTSPQYSPTSPQYS 1723
Query: 360 PTSP 371
P SP
Sbjct: 1724 PRSP 1727
Score = 59.7 bits (143), Expect = 1e-07
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSP SP YS
Sbjct: 1677 SPSYSPTSP--QYSPTSP-QYSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPRSPNYS 1730
Query: 360 PTSP 371
P SP
Sbjct: 1731 PKSP 1734
[64][TOP]
>UniRef100_UPI0000F2BF12 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Monodelphis
domestica RepID=UPI0000F2BF12
Length = 1970
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGMSPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 360 PTSP 371
PTSP
Sbjct: 1792 PTSP 1795
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1784
Query: 360 PTSP 371
PTSP
Sbjct: 1785 PTSP 1788
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1777 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1828
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSP 1851
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1859 KYSPTSPKYSPTSP 1872
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1854 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1909
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPTYSPTSP 1935
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1822 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1876
Query: 363 TSP 371
TSP
Sbjct: 1877 TSP 1879
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1885 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1935
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1936 KGSTYSPTSPGYSPTSPTYSLTSP 1959
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1878 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1932
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1933 TSPKGSTYSPTSPGYSPTSP 1952
[65][TOP]
>UniRef100_UPI0000EBDCD2 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa
isoform 4 n=1 Tax=Bos taurus RepID=UPI0000EBDCD2
Length = 1970
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 360 PTSP 371
PTSP
Sbjct: 1792 PTSP 1795
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1784
Query: 360 PTSP 371
PTSP
Sbjct: 1785 PTSP 1788
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1777 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1828
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSP 1851
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1859 KYSPTSPKYSPTSP 1872
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1854 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1909
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPTYSPTSP 1935
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1822 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1876
Query: 363 TSP 371
TSP
Sbjct: 1877 TSP 1879
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1885 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1935
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1936 KGSTYSPTSPGYSPTSPTYSLTSP 1959
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1878 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1932
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1933 TSPKGSTYSPTSPGYSPTSP 1952
[66][TOP]
>UniRef100_UPI0000E48672 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48672
Length = 1913
Score = 80.9 bits (198), Expect = 4e-14
Identities = 64/173 (36%), Positives = 80/173 (46%), Gaps = 50/173 (28%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPS-----YMDGLDFG------------M 131
NIMLG+LA +GTG L L+ E K+ +E+ + M G+ FG M
Sbjct: 1457 NIMLGKLAGLGTGSFDLLLDAEKCKHGMEIPMGMGAGLVGMPGMLFGAMGSPSQSMSPQM 1516
Query: 132 TP---GRSPISG---TPYHEGM-------------MSPSYMLSPNLRLSPTNDAQFSPYV 254
TP G +P+ G TP G SP++ P SP N
Sbjct: 1517 TPWNQGATPMHGSGMTPGGPGFSPANSESTGFSPAYSPAWSPQPQSPGSPANSPYIPSPA 1576
Query: 255 GGM--AFSPTS------------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
G M ++SP S SPGYSP+SP YSP+SPGYSP SP YSPTSP
Sbjct: 1577 GPMSPSYSPASPSYLPASPATPQSPGYSPTSPSYSPTSPGYSPASPSYSPTSP 1629
Score = 66.6 bits (161), Expect = 8e-10
Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+PG SP S + P G SPSY SP+ SPT+ + +SP ++SPTS P YS
Sbjct: 1600 SPGYSPTSPSYSPTSPGYSPASPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYS 1653
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1654 PTSPSYSPTSPSYSPTSPSYSPTSP 1678
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1614 SPGYSPASPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1664
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1665 SYSPTSPSYSPTSPSYSPTSP 1685
Score = 66.6 bits (161), Expect = 8e-10
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
G +P S T SPSY SP+ SPT+ + +SP ++SPTS P YSP+
Sbjct: 1616 GYSPASPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPT 1669
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1670 SPSYSPTSPSYSPTSPSYSPTSP 1692
Score = 66.2 bits (160), Expect = 1e-09
Identities = 45/94 (47%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 93 QLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAF 269
Q PSY G +P S T SPSY SPN S + SP ++
Sbjct: 1774 QSPSYSPGSP-SYSPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASP-----SY 1827
Query: 270 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPTS P YSPSSP YSP+SP YSPTSP YSP SP
Sbjct: 1828 SPTS-PKYSPSSPKYSPTSPTYSPTSPKYSPASP 1860
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPSSP YSPTSP YS
Sbjct: 1712 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPSSPKYSPTSPSYS 1765
Query: 360 PTSP 371
PTSP
Sbjct: 1766 PTSP 1769
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1649 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1702
Query: 360 PTSP 371
PTSP
Sbjct: 1703 PTSP 1706
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1656 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1709
Query: 360 PTSP 371
PTSP
Sbjct: 1710 PTSP 1713
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1663 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1716
Query: 360 PTSP 371
PTSP
Sbjct: 1717 PTSP 1720
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1670 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1723
Query: 360 PTSP 371
PTSP
Sbjct: 1724 PTSP 1727
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1677 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1730
Query: 360 PTSP 371
PTSP
Sbjct: 1731 PTSP 1734
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1684 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1737
Query: 360 PTSP 371
PTSP
Sbjct: 1738 PTSP 1741
Score = 62.4 bits (150), Expect = 2e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPSSP YSP+SP YSPTSP YS
Sbjct: 1719 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPSSPKYSPTSPSYSPTSPSYS 1772
Query: 360 PTSP 371
P SP
Sbjct: 1773 PQSP 1776
Score = 62.4 bits (150), Expect = 2e-08
Identities = 34/63 (53%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP +SP G ++SP SSP YSP+SP YSP+SP YSPTSP +SP
Sbjct: 1761 SPSY--SPTSPSYSPQSPSYSP--GSPSYSP-SSPKYSPTSPSYSPTSPSYSPTSPNFSP 1815
Query: 363 TSP 371
+SP
Sbjct: 1816 SSP 1818
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP +SPTS P YSP+SP YSP SP YSP SP YS
Sbjct: 1733 SPSYSPTSPSY--SPTSPS-YSP--SSPKYSPTS-PSYSPTSPSYSPQSPSYSPGSPSYS 1786
Query: 360 PTSP 371
P+SP
Sbjct: 1787 PSSP 1790
Score = 58.2 bits (139), Expect = 3e-07
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SP SSP YSP+SP YSP+SP YSP SP YS
Sbjct: 1726 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSP-SSPKYSPTSPSYSPTSPSYSPQSPSYS 1779
Query: 360 PTSP 371
P SP
Sbjct: 1780 PGSP 1783
Score = 57.0 bits (136), Expect = 6e-07
Identities = 42/89 (47%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
+P SP S T SPSY SP + ++SP +SPTS SP Y
Sbjct: 1810 SPNFSPSSPT---YSPASPSY--SPTSPKYSPSSPKYSPT--SPTYSPTSPKYSPASPTY 1862
Query: 294 SPSSPGYSPSSPGYSPTSP---GYSPTSP 371
SP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1863 SPTSPKYSPSSPTYSPTSPKGSTYSPTSP 1891
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/89 (42%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
+P S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1821 SPASPSYSPTSPKYSPSSPKY--SPTSPTYSPTSPKYSP--ASPTYSPTSPKYSPSSPTY 1876
Query: 294 SPSSPG---YSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1877 SPTSPKGSTYSPTSPSYSPTSPSYSPTSP 1905
[67][TOP]
>UniRef100_UPI0000E24648 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Pan troglodytes RepID=UPI0000E24648
Length = 1913
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 62.4 bits (150), Expect = 2e-08
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYH----EGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPG 290
+P SP S + YH + SPSY SP + +++P SPT SSP
Sbjct: 1717 SPSYSPTSQS-YHPTVVDSSTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPS 1767
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSP+SP Y+PTSP YSP+SP
Sbjct: 1768 YSPSSPSYSPTSPKYTPTSPSYSPSSP 1794
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTS 368
PTS
Sbjct: 1722 PTS 1724
Score = 60.8 bits (146), Expect = 4e-08
Identities = 39/91 (42%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Frame = +3
Query: 117 LDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS----- 281
+D +P SP S + SP Y +P + +SP ++SPTS
Sbjct: 1732 VDSSTSPSYSPTSPS---YSPSSPRY--TPQSPTYTPSSPSYSP--SSPSYSPTSPKYTP 1784
Query: 282 -SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSPSSP Y+P+SP YSPTSP YSPTSP
Sbjct: 1785 TSPSYSPSSPEYTPTSPKYSPTSPKYSPTSP 1815
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1797 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1852
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1853 SPTSPTYSPTSPKYSPTSPTYSPTSP 1878
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1765 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1819
Query: 363 TSP 371
TSP
Sbjct: 1820 TSP 1822
Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/62 (54%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTS Y
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSQSYH 1728
Query: 360 PT 365
PT
Sbjct: 1729 PT 1730
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1828 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1878
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1879 KGSTYSPTSPGYSPTSPTYSLTSP 1902
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1821 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1875
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1876 TSPKGSTYSPTSPGYSPTSP 1895
[68][TOP]
>UniRef100_UPI00005A0B2A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 21 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2A
Length = 1896
Score = 80.9 bits (198), Expect = 4e-14
Identities = 64/166 (38%), Positives = 75/166 (45%), Gaps = 43/166 (25%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1458 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1517
Query: 129 MTP---GRSPISGT-PYHEGMMSPSYMLSPNLR-----LSPTNDAQFSPYVG-----GMA 266
MTP G +P G GM + SP+ SP +SP G G A
Sbjct: 1518 MTPWNQGATPAYGAWSPRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGGA 1577
Query: 267 FSPTSSP-----------GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+ SP GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1578 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1623
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1587 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1641
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1642 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1672
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1643 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1696
Query: 360 PTSP 371
PTSP
Sbjct: 1697 PTSP 1700
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1650 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1703
Query: 360 PTSP 371
PTSP
Sbjct: 1704 PTSP 1707
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1657 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1710
Query: 360 PTSP 371
PTSP
Sbjct: 1711 PTSP 1714
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1664 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1717
Query: 360 PTSP 371
PTSP
Sbjct: 1718 PTSP 1721
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1671 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1724
Query: 360 PTSP 371
PTSP
Sbjct: 1725 PTSP 1728
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1678 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1731
Query: 360 PTSP 371
PTSP
Sbjct: 1732 PTSP 1735
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/72 (54%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTS------SPGYSPSSPGYSPSSPGY 335
SPSY SPN S N SP ++SPTS SP YSPSSP Y+P+SP Y
Sbjct: 1727 SPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 1786
Query: 336 SPTSPGYSPTSP 371
SPTSP YSPTSP
Sbjct: 1787 SPTSPKYSPTSP 1798
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1699 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1752
Query: 360 PTSP 371
PTSP
Sbjct: 1753 PTSP 1756
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1706 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1759
Query: 360 PTSP 371
PTSP
Sbjct: 1760 PTSP 1763
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1780 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1835
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1836 SPTSPTYSPTSPKYSPTSPTYSPTSP 1861
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1811 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1861
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1862 KGSTYSPTSPGYSPTSPTYSLTSP 1885
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1804 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1858
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1859 TSPKGSTYSPTSPGYSPTSP 1878
[69][TOP]
>UniRef100_UPI0001B7A25C UPI0001B7A25C related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A25C
Length = 1968
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1459 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1518
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1519 MTPWNQGATPAYGAWSPSVGDGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1578
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1579 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1636
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1600 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1654
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1655 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1685
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1740 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1793
Query: 360 PTSP 371
PTSP
Sbjct: 1794 PTSP 1797
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1656 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1709
Query: 360 PTSP 371
PTSP
Sbjct: 1710 PTSP 1713
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1663 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1716
Query: 360 PTSP 371
PTSP
Sbjct: 1717 PTSP 1720
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1670 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1723
Query: 360 PTSP 371
PTSP
Sbjct: 1724 PTSP 1727
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1677 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1730
Query: 360 PTSP 371
PTSP
Sbjct: 1731 PTSP 1734
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1684 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1737
Query: 360 PTSP 371
PTSP
Sbjct: 1738 PTSP 1741
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1691 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1744
Query: 360 PTSP 371
PTSP
Sbjct: 1745 PTSP 1748
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1698 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1751
Query: 360 PTSP 371
PTSP
Sbjct: 1752 PTSP 1755
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1705 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1758
Query: 360 PTSP 371
PTSP
Sbjct: 1759 PTSP 1762
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1712 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1765
Query: 360 PTSP 371
PTSP
Sbjct: 1766 PTSP 1769
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1719 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1772
Query: 360 PTSP 371
PTSP
Sbjct: 1773 PTSP 1776
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1733 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1786
Query: 360 PTSP 371
PTSP
Sbjct: 1787 PTSP 1790
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1779 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1830
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1831 SPSYSPTSPKYTPTSPSYSPSSP 1853
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 1803 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1860
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1861 KYSPTSPKYSPTSP 1874
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1856 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1911
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1912 SPTSPTYSPTSPKYSPTSPTYSPTSP 1937
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1824 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1878
Query: 363 TSP 371
TSP
Sbjct: 1879 TSP 1881
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1887 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1937
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1938 KGSTYSPTSPGYSPTSPTYSLTSP 1961
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1880 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1934
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1935 TSPKGSTYSPTSPGYSPTSP 1954
[70][TOP]
>UniRef100_UPI0000DA33D8 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) n=1 Tax=Rattus norvegicus RepID=UPI0000DA33D8
Length = 1970
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 360 PTSP 371
PTSP
Sbjct: 1792 PTSP 1795
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1784
Query: 360 PTSP 371
PTSP
Sbjct: 1785 PTSP 1788
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1777 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1828
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSP 1851
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1859 KYSPTSPKYSPTSP 1872
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1854 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1909
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPTYSPTSP 1935
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1822 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1876
Query: 363 TSP 371
TSP
Sbjct: 1877 TSP 1879
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1885 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1935
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1936 KGSTYSPTSPGYSPTSPTYSLTSP 1959
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1878 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1932
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1933 TSPKGSTYSPTSPGYSPTSP 1952
[71][TOP]
>UniRef100_UPI0001951285 220 kDa DNA-directed RNA polymerase polypeptide A n=1 Tax=Canis lupus
familiaris RepID=UPI0001951285
Length = 1969
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 64.7 bits (156), Expect = 3e-09
Identities = 40/83 (48%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISG--TPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
+P SP S TP MSP+Y SPN SP+ Y SP Y+PS
Sbjct: 1766 SPSYSPTSPNYTP-----MSPNYSPTSPNSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPS 1820
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSPSSP YSPTSP Y+PTSP
Sbjct: 1821 SPSYSPSSPSYSPTSPKYTPTSP 1843
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 61.6 bits (148), Expect = 3e-08
Identities = 40/87 (45%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Frame = +3
Query: 144 SPISGTPYHEGMMSPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
SP S T SPSY S P + +SP ++SPTS SP
Sbjct: 1787 SPNSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPS 1844
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSPSSP Y+P+SP YSPTSP YSPTSP
Sbjct: 1845 YSPSSPEYTPTSPKYSPTSPKYSPTSP 1871
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1853 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1908
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1909 SPTSPTYSPTSPKYSPTSPTYSPTSP 1934
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1821 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1875
Query: 363 TSP 371
TSP
Sbjct: 1876 TSP 1878
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++PTS P YSP+SP YSP+SP Y+P SP YS
Sbjct: 1731 SPSYSPTSPSY--SPTSP-NYSP--SRPNYTPTS-PSYSPTSPSYSPTSPNYTPMSPNYS 1784
Query: 360 PTSP 371
PTSP
Sbjct: 1785 PTSP 1788
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1884 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1934
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1935 KGSTYSPTSPGYSPTSPTYSLTSP 1958
Score = 53.9 bits (128), Expect = 5e-06
Identities = 36/78 (46%), Positives = 42/78 (53%), Gaps = 15/78 (19%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTS------SPGYSPSSPG------YS 317
SPSY SPN S N SP ++SPTS SP YSP+SP YS
Sbjct: 1738 SPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTSPNSPTSPSYS 1797
Query: 318 PSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP Y+P SP
Sbjct: 1798 PTSPSYSPSSPRYTPQSP 1815
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1877 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1931
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1932 TSPKGSTYSPTSPGYSPTSP 1951
[72][TOP]
>UniRef100_O35559 DNA-directed RNA polymerase n=1 Tax=Cricetulus griseus
RepID=O35559_CRIGR
Length = 1970
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 360 PTSP 371
PTSP
Sbjct: 1792 PTSP 1795
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1784
Query: 360 PTSP 371
PTSP
Sbjct: 1785 PTSP 1788
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1777 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1828
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSP 1851
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1859 KYSPTSPKYSPTSP 1872
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1854 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1909
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPTYSPTSP 1935
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1822 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1876
Query: 363 TSP 371
TSP
Sbjct: 1877 TSP 1879
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1885 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1935
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1936 KGSTYSPTSPGYSPTSPTYSLTSP 1959
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1878 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1932
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1933 TSPKGSTYSPTSPGYSPTSP 1952
[73][TOP]
>UniRef100_O08847 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=O08847_MOUSE
Length = 1966
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 360 PTSP 371
PTSP
Sbjct: 1792 PTSP 1795
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1784
Query: 360 PTSP 371
PTSP
Sbjct: 1785 PTSP 1788
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1777 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1828
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSP 1851
Score = 60.5 bits (145), Expect = 6e-08
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1854 TPASPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1909
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPTYSPTSP 1935
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPASP 1858
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1859 KYSPTSPKYSPTSP 1872
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1822 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPASPKYSPTSPKYSPTSPKYSP 1876
Query: 363 TSP 371
TSP
Sbjct: 1877 TSP 1879
Score = 57.4 bits (137), Expect = 5e-07
Identities = 37/81 (45%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP S + SP Y SP+ S SP +SPTS P YSP+SP
Sbjct: 1819 TPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASP-----KYSPTS-PKYSPTSP 1872
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPT+P YSPTSP
Sbjct: 1873 KYSPTSPTYSPTTPKYSPTSP 1893
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1885 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1935
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1936 KGSTYSPTSPGYSPTSPTYSLTSP 1959
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1878 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1932
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1933 TSPKGSTYSPTSPGYSPTSP 1952
[74][TOP]
>UniRef100_B4DET1 cDNA FLJ53860, highly similar to DNA-directed RNA polymerase II
largest subunit (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B4DET1_HUMAN
Length = 855
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 356 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 415
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 416 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 475
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 476 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 533
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 497 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 551
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 552 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 582
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 637 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 690
Query: 360 PTSP 371
PTSP
Sbjct: 691 PTSP 694
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 553 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 606
Query: 360 PTSP 371
PTSP
Sbjct: 607 PTSP 610
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 560 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 613
Query: 360 PTSP 371
PTSP
Sbjct: 614 PTSP 617
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 567 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 620
Query: 360 PTSP 371
PTSP
Sbjct: 621 PTSP 624
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 574 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 627
Query: 360 PTSP 371
PTSP
Sbjct: 628 PTSP 631
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 581 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 634
Query: 360 PTSP 371
PTSP
Sbjct: 635 PTSP 638
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 588 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 641
Query: 360 PTSP 371
PTSP
Sbjct: 642 PTSP 645
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 595 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 648
Query: 360 PTSP 371
PTSP
Sbjct: 649 PTSP 652
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 602 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 655
Query: 360 PTSP 371
PTSP
Sbjct: 656 PTSP 659
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 609 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 662
Query: 360 PTSP 371
PTSP
Sbjct: 663 PTSP 666
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 616 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 669
Query: 360 PTSP 371
PTSP
Sbjct: 670 PTSP 673
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 630 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 683
Query: 360 PTSP 371
PTSP
Sbjct: 684 PTSP 687
Score = 61.2 bits (147), Expect = 3e-08
Identities = 39/83 (46%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 676 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 727
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSPTSP
Sbjct: 728 SPSYSPTSPKYTPTSPKYSPTSP 750
Score = 60.5 bits (145), Expect = 6e-08
Identities = 34/63 (53%), Positives = 38/63 (60%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP+ SP Q Y SSP YSP+SP Y+P+SP YSPTSP YSP
Sbjct: 700 SPSY--SPS---SPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPKYSPTSPKYSP 754
Query: 363 TSP 371
TSP
Sbjct: 755 TSP 757
Score = 58.9 bits (141), Expect = 2e-07
Identities = 34/63 (53%), Positives = 40/63 (63%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP ++SP +SPTS P YSP+SP YSP++P YSPTSP YSP
Sbjct: 728 SPSY--SPTSPKYTPTSPKYSPT--SPKYSPTS-PKYSPTSPTYSPTTPKYSPTSPTYSP 782
Query: 363 TSP 371
TSP
Sbjct: 783 TSP 785
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P +SPTS P YSP+SP YSP+SP YSPT+P YSP
Sbjct: 721 SPSYSPS-SPSYSPTSP-KYTPT--SPKYSPTS-PKYSPTSPKYSPTSPTYSPTTPKYSP 775
Query: 363 TSP 371
TSP
Sbjct: 776 TSP 778
Score = 58.2 bits (139), Expect = 3e-07
Identities = 38/86 (44%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 739 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 794
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+ P YSP+SP YSPTSP YSPTSP
Sbjct: 795 SPTGPTYSPTSPKYSPTSPTYSPTSP 820
Score = 56.2 bits (134), Expect = 1e-06
Identities = 36/72 (50%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPG---YSPSSPGY 335
SP+Y SP + ++SP G +SPTS SP YSP+SP YSP+SPGY
Sbjct: 777 SPTY--SPTSPVYTPTSPKYSPT--GPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGY 832
Query: 336 SPTSPGYSPTSP 371
SPTSP YS TSP
Sbjct: 833 SPTSPTYSLTSP 844
[75][TOP]
>UniRef100_A6NN93 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=A6NN93_HUMAN
Length = 1970
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 360 PTSP 371
PTSP
Sbjct: 1792 PTSP 1795
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1784
Query: 360 PTSP 371
PTSP
Sbjct: 1785 PTSP 1788
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1777 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1828
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1829 SPSYSPASPKYTPTSPSYSPSSP 1851
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1854 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1909
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPTYSPTSP 1935
Score = 58.5 bits (140), Expect = 2e-07
Identities = 36/70 (51%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYV-GGMAFSPTS------SPGYSPSSPGYSPSSPGYSP 341
SPSY SP+ SP Q Y ++SP+S SP Y+P+SP YSPSSP Y+P
Sbjct: 1801 SPSY--SPS---SPRYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPSSPEYTP 1855
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1856 TSPKYSPTSP 1865
Score = 58.5 bits (140), Expect = 2e-07
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP+ S + + SP ++PTS P YSPSSP Y+P+SP YSPTSP YS
Sbjct: 1815 SPTYTPSSPSYSPSSPSYSPASP-----KYTPTS-PSYSPSSPEYTPTSPKYSPTSPKYS 1868
Query: 360 PTSP 371
PTSP
Sbjct: 1869 PTSP 1872
Score = 57.8 bits (138), Expect = 4e-07
Identities = 33/63 (52%), Positives = 42/63 (66%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1822 SPSY--SPSSPSYSPASPKYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1876
Query: 363 TSP 371
TSP
Sbjct: 1877 TSP 1879
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1885 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1935
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1936 KGSTYSPTSPGYSPTSPTYSLTSP 1959
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1878 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1932
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1933 TSPKGSTYSPTSPGYSPTSP 1952
[76][TOP]
>UniRef100_A7TTU2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vanderwaltozyma
polyspora DSM 70294 RepID=A7TTU2_VANPO
Length = 1311
Score = 80.9 bits (198), Expect = 4e-14
Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 27/149 (18%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDE-MLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGM 179
N++LGQ+AP+GTG + +++E ++K E ++ DG + G+TP + G+
Sbjct: 1109 NVILGQMAPVGTGAFDVMIDEESLIKYMPEQKITELEDGQEGGLTPYSN-------ESGL 1161
Query: 180 MSPSYMLSPNLRLSPTNDAQ--------FSPYVG---GMAFSP---------------TS 281
++ L L SP D+ F+ Y G G A SP S
Sbjct: 1162 VNADIDLKDELMFSPLVDSGSTDAMAGGFTAYGGADYGGATSPFTAYGESPSSPGFGGVS 1221
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTS 368
SPG+SP+SP YSP+SP YSPTSP YSPTS
Sbjct: 1222 SPGFSPTSPAYSPTSPSYSPTSPSYSPTS 1250
[77][TOP]
>UniRef100_P08775 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Mus musculus
RepID=RPB1_MOUSE
Length = 1970
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 360 PTSP 371
PTSP
Sbjct: 1792 PTSP 1795
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1784
Query: 360 PTSP 371
PTSP
Sbjct: 1785 PTSP 1788
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1777 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1828
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSP 1851
Score = 60.5 bits (145), Expect = 6e-08
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1854 TPASPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1909
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPTYSPTSP 1935
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPASP 1858
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1859 KYSPTSPKYSPTSP 1872
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1822 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPASPKYSPTSPKYSPTSPKYSP 1876
Query: 363 TSP 371
TSP
Sbjct: 1877 TSP 1879
Score = 57.4 bits (137), Expect = 5e-07
Identities = 37/81 (45%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP S + SP Y SP+ S SP +SPTS P YSP+SP
Sbjct: 1819 TPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASP-----KYSPTS-PKYSPTSP 1872
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPT+P YSPTSP
Sbjct: 1873 KYSPTSPTYSPTTPKYSPTSP 1893
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1885 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1935
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1936 KGSTYSPTSPGYSPTSPTYSLTSP 1959
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1878 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1932
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1933 TSPKGSTYSPTSPGYSPTSP 1952
[78][TOP]
>UniRef100_P24928 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Euarchontoglires
RepID=RPB1_HUMAN
Length = 1970
Score = 80.9 bits (198), Expect = 4e-14
Identities = 63/178 (35%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 129 MTP---GRSPISG----------TPYHEGMM--------------SPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1517 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1576
Query: 228 NDAQFSPYVGGM----------AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ + P GG A+ P S GY+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 1577 PSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1791
Query: 360 PTSP 371
PTSP
Sbjct: 1792 PTSP 1795
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1784
Query: 360 PTSP 371
PTSP
Sbjct: 1785 PTSP 1788
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1777 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1828
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSP 1851
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1859 KYSPTSPKYSPTSP 1872
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1854 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1909
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1910 SPTSPTYSPTSPKYSPTSPTYSPTSP 1935
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 1822 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 1876
Query: 363 TSP 371
TSP
Sbjct: 1877 TSP 1879
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1885 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1935
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1936 KGSTYSPTSPGYSPTSPTYSLTSP 1959
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1878 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1932
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1933 TSPKGSTYSPTSPGYSPTSP 1952
[79][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=Q5ACI7_CANAL
Length = 1728
Score = 80.5 bits (197), Expect = 5e-14
Identities = 55/153 (35%), Positives = 73/153 (47%), Gaps = 30/153 (19%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNA-IELQLPSYMDG----------------LDFGM 131
N+MLGQ+AP+GTG L ++D ML+ A + + DG +D
Sbjct: 1429 NVMLGQMAPLGTGSFDLMVDDRMLQKAPSSMAMDDIADGGGATPYKDYENARDENIDIDA 1488
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPY-------------VGGMAFS 272
G SPI +EG + PT+ A SP+ G +S
Sbjct: 1489 GAGFSPIHIAQMNEGNIGGLTSYGG----QPTSPAATSPFSYGYNSITSPGYTSPGYGYS 1544
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
PT SP YSP+SP Y+P+SP YSPTSP Y+PTSP
Sbjct: 1545 PT-SPSYSPTSPSYAPTSPAYSPTSPSYAPTSP 1576
Score = 64.7 bits (156), Expect = 3e-09
Identities = 37/63 (58%), Positives = 43/63 (68%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1603 SPSY--------SPTSP-QYSPT--SPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPSYSP 1650
Query: 363 TSP 371
TSP
Sbjct: 1651 TSP 1653
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1617 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPQYSPTSPSYS 1670
Query: 360 PTSP 371
PTSP
Sbjct: 1671 PTSP 1674
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSP 341
SPSY SP SPT+ A +SP ++SPTS SP YSP+SP YSP+SP YSP
Sbjct: 1582 SPSYAPTSP--AYSPTSPA-YSPT--SPSYSPTSPQYSPTSPSYSPTSPSYSPTSPSYSP 1636
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1637 TSPAYSPTSP 1646
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1624 SPSYSPTSPSY--SPTSPA-YSPT--SPSYSPTS-PSYSPTSPQYSPTSPSYSPTSPQYS 1677
Query: 360 PTSP 371
PTSP
Sbjct: 1678 PTSP 1681
Score = 63.5 bits (153), Expect = 7e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1645 SPSYSPTSPSY--SPTSP-QYSPT--SPSYSPTS-PQYSPTSPSYSPTSPQYSPTSPQYS 1698
Query: 360 PTSP 371
PTSP
Sbjct: 1699 PTSP 1702
Score = 62.0 bits (149), Expect = 2e-08
Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SPSY SP +SP ++SPTS SP YSP+SP YSP+SP YSPT
Sbjct: 1631 SPSY--SPTSPAYSPTSPSYSPT--SPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPT 1686
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 1687 SPQYSPTSP 1695
Score = 58.9 bits (141), Expect = 2e-07
Identities = 36/63 (57%), Positives = 42/63 (66%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1666 SPSY--------SPTSP-QYSPT--SPSYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYSP 1713
Query: 363 TSP 371
SP
Sbjct: 1714 GSP 1716
[80][TOP]
>UniRef100_UPI000186501C hypothetical protein BRAFLDRAFT_115025 n=1 Tax=Branchiostoma floridae
RepID=UPI000186501C
Length = 1956
Score = 80.1 bits (196), Expect = 7e-14
Identities = 69/198 (34%), Positives = 81/198 (40%), Gaps = 75/198 (37%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQL---------------------------- 98
NIMLGQLA IGTG L L+ E K +E+
Sbjct: 1453 NIMLGQLARIGTGSFDLMLDAEKCKYGMEIPTNLVGGGLMAGPGPGMFFGNAGSPTASMS 1512
Query: 99 -----------PSY----MDGLDFGMTPGR-----------------------SPISGTP 164
P+Y GL GMTPG SP G+P
Sbjct: 1513 PQMTPWQQVGTPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSPAWSPTPGSP 1572
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYV----GGMA-----FSPTSSPGYSPSSPGYS 317
G SP Y+ SP +SP+ Y+ GGM +SPTS P YSP+SP YS
Sbjct: 1573 GSPGPASP-YIPSPGGPMSPSYSPASPAYMPRSPGGMTPQSPGYSPTS-PSYSPTSPSYS 1630
Query: 318 PSSPGYSPTSPGYSPTSP 371
P+SP YSPTSP YSPTSP
Sbjct: 1631 PASPNYSPTSPSYSPTSP 1648
Score = 75.5 bits (184), Expect = 2e-12
Identities = 48/92 (52%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+YM GMTP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYT 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYTPTSPKYS 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 62.4 bits (150), Expect = 2e-08
Identities = 35/64 (54%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1731 SPSYSPTSPSYSPTSPNYTPTSP-----KYSPTS-PSYSPTSPSYSPASPSYSPTSPSYS 1784
Query: 360 PTSP 371
P+SP
Sbjct: 1785 PSSP 1788
Score = 62.0 bits (149), Expect = 2e-08
Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 12/75 (16%)
Frame = +3
Query: 183 SPSYM-LSPNL-----RLSPTNDA------QFSPYVGGMAFSPTSSPGYSPSSPGYSPSS 326
SPSY SPN + SPT+ + +SP ++SPTS P YSPSSP YSP S
Sbjct: 1738 SPSYSPTSPNYTPTSPKYSPTSPSYSPTSPSYSP--ASPSYSPTS-PSYSPSSPNYSPQS 1794
Query: 327 PGYSPTSPGYSPTSP 371
P YSP+SP YSP+SP
Sbjct: 1795 PSYSPSSPSYSPSSP 1809
Score = 60.1 bits (144), Expect = 7e-08
Identities = 37/80 (46%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T SP+Y SP+ S + + SP ++PTS P YSPSSP
Sbjct: 1770 SPASPSYSPTSPSYSPSSPNYSPQSPSYSPSSPSYSPSSPNPSSPKYTPTS-PKYSPSSP 1828
Query: 309 GYSPSSPGYSPTSPGYSPTS 368
YSPSSP YSPTSP YSP+S
Sbjct: 1829 KYSPSSPKYSPTSPTYSPSS 1848
Score = 59.3 bits (142), Expect = 1e-07
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + + SP + +P SSP Y+P+SP YSPSSP YSP+SP YS
Sbjct: 1780 SPSYSPSSPNYSPQSPSYSPSSPSYSPSSPNP-SSPKYTPTSPKYSPSSPKYSPSSPKYS 1838
Query: 360 PTSP 371
PTSP
Sbjct: 1839 PTSP 1842
Score = 58.9 bits (141), Expect = 2e-07
Identities = 32/63 (50%), Positives = 42/63 (66%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SP Y SP + A++SP ++SP S+P Y+P+SP YSP+SP Y+PTSP YSP
Sbjct: 1834 SPKY--SPTSPTYSPSSAKYSP--ASPSYSP-STPKYTPTSPKYSPASPTYTPTSPKYSP 1888
Query: 363 TSP 371
TSP
Sbjct: 1889 TSP 1891
Score = 58.9 bits (141), Expect = 2e-07
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP+ ++SP ++PTS P YSP+SP Y+P +P YSPTSP YSP
Sbjct: 1855 SPSY--SPSTPKYTPTSPKYSP--ASPTYTPTS-PKYSPTSPSYTPDTPKYSPTSPKYSP 1909
Query: 363 TSP 371
TSP
Sbjct: 1910 TSP 1912
Score = 55.1 bits (131), Expect = 2e-06
Identities = 40/93 (43%), Positives = 49/93 (52%)
Frame = +3
Query: 93 QLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFS 272
Q PSY +P SP S P SP Y +PT+ ++SP +S
Sbjct: 1793 QSPSYSPS-----SPSYSPSSPNP-----SSPKY--------TPTSP-KYSP--SSPKYS 1831
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P SSP YSP+SP YSPSS YSP SP YSP++P
Sbjct: 1832 P-SSPKYSPTSPTYSPSSAKYSPASPSYSPSTP 1863
[81][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
RepID=UPI0000F24379
Length = 1739
Score = 80.1 bits (196), Expect = 7e-14
Identities = 62/164 (37%), Positives = 78/164 (47%), Gaps = 41/164 (25%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNA-----IELQLPSYMDGLDFGMTP---------- 137
N+MLGQ+AP+GTG + L+D+ML+ A + + D D G TP
Sbjct: 1429 NVMLGQMAPLGTGAFDVMLDDKMLQTAPSNVAVAAGNDEFAD--DGGATPYREYDMEDDK 1486
Query: 138 -------GRSPI---------SGTPYHEGMMSPSYMLSPNL--RLSPTNDAQFSPYVGGM 263
G SPI G + G + SP SP+ SP GG
Sbjct: 1487 IQFEEGAGFSPIHTAQVQDVSGGLTSYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYGGT 1546
Query: 264 A--FSPTS------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ +SPTS SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1547 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSP 1590
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1582 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1635
Query: 360 PTSP 371
PTSP
Sbjct: 1636 PTSP 1639
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1589 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1642
Query: 360 PTSP 371
PTSP
Sbjct: 1643 PTSP 1646
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1596 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1649
Query: 360 PTSP 371
PTSP
Sbjct: 1650 PTSP 1653
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1603 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1656
Query: 360 PTSP 371
PTSP
Sbjct: 1657 PTSP 1660
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1610 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1663
Query: 360 PTSP 371
PTSP
Sbjct: 1664 PTSP 1667
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1617 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1670
Query: 360 PTSP 371
PTSP
Sbjct: 1671 PTSP 1674
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1624 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1677
Query: 360 PTSP 371
PTSP
Sbjct: 1678 PTSP 1681
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1631 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 360 PTSP 371
PTSP
Sbjct: 1685 PTSP 1688
Score = 63.5 bits (153), Expect = 7e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1638 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPQYS 1691
Query: 360 PTSP 371
PTSP
Sbjct: 1692 PTSP 1695
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1645 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPQYSPTSPQYS 1698
Query: 360 PTSP 371
PTSP
Sbjct: 1699 PTSP 1702
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1652 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPTSPLYS 1705
Query: 360 PTSP 371
PTSP
Sbjct: 1706 PTSP 1709
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1659 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PQYSPTSPQYSPTSPLYSPTSPQYS 1712
Query: 360 PTSP 371
PTSP
Sbjct: 1713 PTSP 1716
Score = 56.6 bits (135), Expect = 8e-07
Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSP SP YS
Sbjct: 1673 SPSYSPTSPSY--SPTSP-QYSPT--SPQYSPTS-PLYSPTSPQYSPTSPQYSPGSPEYS 1726
Query: 360 PTSP 371
P SP
Sbjct: 1727 PNSP 1730
[82][TOP]
>UniRef100_C3ZES3 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae
RepID=C3ZES3_BRAFL
Length = 1934
Score = 80.1 bits (196), Expect = 7e-14
Identities = 69/198 (34%), Positives = 81/198 (40%), Gaps = 75/198 (37%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQL---------------------------- 98
NIMLGQLA IGTG L L+ E K +E+
Sbjct: 1453 NIMLGQLARIGTGSFDLMLDAEKCKYGMEIPTNLVGGGLMAGPGPGMFFGNAGSPTASMS 1512
Query: 99 -----------PSY----MDGLDFGMTPGR-----------------------SPISGTP 164
P+Y GL GMTPG SP G+P
Sbjct: 1513 PQMTPWQQVGTPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAGYSPAWSPTPGSP 1572
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYV----GGMA-----FSPTSSPGYSPSSPGYS 317
G SP Y+ SP +SP+ Y+ GGM +SPTS P YSP+SP YS
Sbjct: 1573 GSPGPASP-YIPSPGGPMSPSYSPASPAYMPRSPGGMTPQSPGYSPTS-PSYSPTSPSYS 1630
Query: 318 PSSPGYSPTSPGYSPTSP 371
P+SP YSPTSP YSPTSP
Sbjct: 1631 PASPNYSPTSPSYSPTSP 1648
Score = 75.5 bits (184), Expect = 2e-12
Identities = 48/92 (52%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+YM GMTP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYMPRSPGGMTPQSPGYSPTSPSYSPTSPSYSPASPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYT 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYTPTSPKYS 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYTPTSPKYSPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 60.5 bits (145), Expect = 6e-08
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P Y+P+SP YSP+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYTPTSPKYSPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
P SP
Sbjct: 1771 PASP 1774
Score = 59.7 bits (143), Expect = 1e-07
Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
Frame = +3
Query: 99 PSYMDGLDFGMT---PGRSPISGTPYHEGMMSPSYMLSPNLRLSPTN------DAQFSPY 251
PSY + +T P +P+ SP Y S + + SPT+ A++SP
Sbjct: 1774 PSYSPTILSNLTQLQPHLTPVHSHVTQYSPSSPKYSPS-SPKYSPTSPTYSPSSAKYSP- 1831
Query: 252 VGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
++SP S+P Y+P+SP YSP+SP Y+PTSP YSPTSP
Sbjct: 1832 -ASPSYSP-STPKYTPTSPKYSPASPTYTPTSPKYSPTSP 1869
Score = 58.9 bits (141), Expect = 2e-07
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP+ ++SP ++PTS P YSP+SP Y+P +P YSPTSP YSP
Sbjct: 1833 SPSY--SPSTPKYTPTSPKYSP--ASPTYTPTS-PKYSPTSPSYTPDTPKYSPTSPKYSP 1887
Query: 363 TSP 371
TSP
Sbjct: 1888 TSP 1890
[83][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
RepID=A3GID7_PICST
Length = 1739
Score = 80.1 bits (196), Expect = 7e-14
Identities = 62/164 (37%), Positives = 78/164 (47%), Gaps = 41/164 (25%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNA-----IELQLPSYMDGLDFGMTP---------- 137
N+MLGQ+AP+GTG + L+D+ML+ A + + D D G TP
Sbjct: 1429 NVMLGQMAPLGTGAFDVMLDDKMLQTAPSNVAVAAGNDEFAD--DGGATPYREYDMEDDK 1486
Query: 138 -------GRSPI---------SGTPYHEGMMSPSYMLSPNL--RLSPTNDAQFSPYVGGM 263
G SPI G + G + SP SP+ SP GG
Sbjct: 1487 IQFEEGAGFSPIHTAQVQDVSGGLTSYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYGGT 1546
Query: 264 A--FSPTS------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ +SPTS SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1547 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSP 1590
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1582 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1635
Query: 360 PTSP 371
PTSP
Sbjct: 1636 PTSP 1639
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1589 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1642
Query: 360 PTSP 371
PTSP
Sbjct: 1643 PTSP 1646
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1596 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1649
Query: 360 PTSP 371
PTSP
Sbjct: 1650 PTSP 1653
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1603 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1656
Query: 360 PTSP 371
PTSP
Sbjct: 1657 PTSP 1660
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1610 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1663
Query: 360 PTSP 371
PTSP
Sbjct: 1664 PTSP 1667
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1617 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1670
Query: 360 PTSP 371
PTSP
Sbjct: 1671 PTSP 1674
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1624 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1677
Query: 360 PTSP 371
PTSP
Sbjct: 1678 PTSP 1681
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1631 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 360 PTSP 371
PTSP
Sbjct: 1685 PTSP 1688
Score = 63.5 bits (153), Expect = 7e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1638 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPQYS 1691
Query: 360 PTSP 371
PTSP
Sbjct: 1692 PTSP 1695
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1645 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPQYSPTSPQYS 1698
Query: 360 PTSP 371
PTSP
Sbjct: 1699 PTSP 1702
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1652 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPTSPSYS 1705
Query: 360 PTSP 371
PTSP
Sbjct: 1706 PTSP 1709
Score = 62.0 bits (149), Expect = 2e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1659 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PQYSPTSPQYSPTSPSYSPTSPQYS 1712
Query: 360 PTSP 371
PTSP
Sbjct: 1713 PTSP 1716
Score = 58.2 bits (139), Expect = 3e-07
Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSP SP YS
Sbjct: 1673 SPSYSPTSPSY--SPTSP-QYSPT--SPQYSPTS-PSYSPTSPQYSPTSPQYSPGSPEYS 1726
Query: 360 PTSP 371
P SP
Sbjct: 1727 PNSP 1730
[84][TOP]
>UniRef100_UPI00005A0B2C PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 23 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B2C
Length = 1888
Score = 79.7 bits (195), Expect = 9e-14
Identities = 65/184 (35%), Positives = 77/184 (41%), Gaps = 61/184 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLD-- 122
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 123 -------------------FGMTPGR----------------------SPISGTPYHEGM 179
GMTPG SP G+P G
Sbjct: 1517 MTPWNQGATPAYDPDPGAGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGP 1576
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPTSP YS
Sbjct: 1577 SSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS 1629
Query: 360 PTSP 371
PTSP
Sbjct: 1630 PTSP 1633
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1597 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1651
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1652 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1682
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1660 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1713
Query: 360 PTSP 371
PTSP
Sbjct: 1714 PTSP 1717
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1667 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1720
Query: 360 PTSP 371
PTSP
Sbjct: 1721 PTSP 1724
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1674 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1727
Query: 360 PTSP 371
PTSP
Sbjct: 1728 PTSP 1731
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1681 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1734
Query: 360 PTSP 371
PTSP
Sbjct: 1735 PTSP 1738
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1688 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1741
Query: 360 PTSP 371
PTSP
Sbjct: 1742 PTSP 1745
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1695 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1748
Query: 360 PTSP 371
P+SP
Sbjct: 1749 PSSP 1752
Score = 62.8 bits (151), Expect = 1e-08
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN S +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YS
Sbjct: 1737 SPSYSPTSPNYSPSSPTSPKYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYS 1793
Query: 360 PTSP 371
PTSP
Sbjct: 1794 PTSP 1797
Score = 61.6 bits (148), Expect = 3e-08
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP + S +SP Y+P+SP YSPSSP Y+PTSP YS
Sbjct: 1723 SPSYSPTSPSY--SPTSPS-YSPTSPNYSPSSPTSPKYTPTSPSYSPSSPEYTPTSPKYS 1779
Query: 360 PTSP 371
PTSP
Sbjct: 1780 PTSP 1783
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1772 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1827
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1828 SPTSPTYSPTSPKYSPTSPTYSPTSP 1853
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1803 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1853
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1854 KGSTYSPTSPGYSPTSPTYSLTSP 1877
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1796 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1850
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1851 TSPKGSTYSPTSPGYSPTSP 1870
[85][TOP]
>UniRef100_UPI00005A0B29 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 20 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B29
Length = 1891
Score = 79.7 bits (195), Expect = 9e-14
Identities = 65/184 (35%), Positives = 77/184 (41%), Gaps = 61/184 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLD-- 122
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1426 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1485
Query: 123 -------------------FGMTPGR----------------------SPISGTPYHEGM 179
GMTPG SP G+P G
Sbjct: 1486 MTPWNQGATPAYDPDPGAGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGP 1545
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPTSP YS
Sbjct: 1546 SSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS 1598
Query: 360 PTSP 371
PTSP
Sbjct: 1599 PTSP 1602
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1566 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1620
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1621 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1651
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1622 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1675
Query: 360 PTSP 371
PTSP
Sbjct: 1676 PTSP 1679
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1629 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1682
Query: 360 PTSP 371
PTSP
Sbjct: 1683 PTSP 1686
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1636 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1689
Query: 360 PTSP 371
PTSP
Sbjct: 1690 PTSP 1693
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1643 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1696
Query: 360 PTSP 371
PTSP
Sbjct: 1697 PTSP 1700
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1650 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1703
Query: 360 PTSP 371
PTSP
Sbjct: 1704 PTSP 1707
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1657 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1710
Query: 360 PTSP 371
PTSP
Sbjct: 1711 PTSP 1714
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P R + T SPSY SPN N +SP ++PTS P YSPSSP
Sbjct: 1717 SPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPN---YSPTPTSPKYTPTS-PSYSPSSP 1772
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
Y+P+SP YSPTSP YSPTSP
Sbjct: 1773 EYTPTSPKYSPTSPKYSPTSP 1793
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP S T SP+Y +SPN +PT+ +++P ++SP SSP Y+P+SP
Sbjct: 1724 TPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTPTSP-KYTPT--SPSYSP-SSPEYTPTSP 1779
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1780 KYSPTSPKYSPTSPKYSPTSP 1800
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1678 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1731
Query: 360 PTSP 371
PTSP
Sbjct: 1732 PTSP 1735
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1685 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1738
Query: 360 PTSP 371
PTSP
Sbjct: 1739 PTSP 1742
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1775 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1830
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1831 SPTSPTYSPTSPKYSPTSPTYSPTSP 1856
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1806 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1856
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1857 KGSTYSPTSPGYSPTSPTYSLTSP 1880
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1799 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1853
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1854 TSPKGSTYSPTSPGYSPTSP 1873
[86][TOP]
>UniRef100_UPI00005A0B28 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 19 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B28
Length = 1908
Score = 79.7 bits (195), Expect = 9e-14
Identities = 65/184 (35%), Positives = 77/184 (41%), Gaps = 61/184 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLD-- 122
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1443 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1502
Query: 123 -------------------FGMTPGR----------------------SPISGTPYHEGM 179
GMTPG SP G+P G
Sbjct: 1503 MTPWNQGATPAYDPDPGAGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGP 1562
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPTSP YS
Sbjct: 1563 SSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS 1615
Query: 360 PTSP 371
PTSP
Sbjct: 1616 PTSP 1619
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1583 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1637
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1638 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1668
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1639 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1692
Query: 360 PTSP 371
PTSP
Sbjct: 1693 PTSP 1696
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1646 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1699
Query: 360 PTSP 371
PTSP
Sbjct: 1700 PTSP 1703
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1660 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1713
Query: 360 PTSP 371
PTSP
Sbjct: 1714 PTSP 1717
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1667 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1720
Query: 360 PTSP 371
PTSP
Sbjct: 1721 PTSP 1724
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1674 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1727
Query: 360 PTSP 371
PTSP
Sbjct: 1728 PTSP 1731
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P R + T SPSY SPN N +SP ++PTS P YSPSSP
Sbjct: 1734 SPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPN---YSPTPTSPKYTPTS-PSYSPSSP 1789
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
Y+P+SP YSPTSP YSPTSP
Sbjct: 1790 EYTPTSPKYSPTSPKYSPTSP 1810
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP S T SP+Y +SPN +PT+ +++P ++SP SSP Y+P+SP
Sbjct: 1741 TPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTPTSP-KYTPT--SPSYSP-SSPEYTPTSP 1796
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1797 KYSPTSPKYSPTSPKYSPTSP 1817
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1695 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1748
Query: 360 PTSP 371
PTSP
Sbjct: 1749 PTSP 1752
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1702 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1755
Query: 360 PTSP 371
PTSP
Sbjct: 1756 PTSP 1759
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1792 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1847
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1848 SPTSPTYSPTSPKYSPTSPTYSPTSP 1873
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1823 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1873
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1874 KGSTYSPTSPGYSPTSPTYSLTSP 1897
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1816 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1870
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1871 TSPKGSTYSPTSPGYSPTSP 1890
[87][TOP]
>UniRef100_UPI00005A0B24 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 15 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B24
Length = 1924
Score = 79.7 bits (195), Expect = 9e-14
Identities = 65/184 (35%), Positives = 77/184 (41%), Gaps = 61/184 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLD-- 122
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1459 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1518
Query: 123 -------------------FGMTPGR----------------------SPISGTPYHEGM 179
GMTPG SP G+P G
Sbjct: 1519 MTPWNQGATPAYDPDPGAGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGP 1578
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPTSP YS
Sbjct: 1579 SSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS 1631
Query: 360 PTSP 371
PTSP
Sbjct: 1632 PTSP 1635
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1599 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1653
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1654 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1684
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1655 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1708
Query: 360 PTSP 371
PTSP
Sbjct: 1709 PTSP 1712
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1662 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1715
Query: 360 PTSP 371
PTSP
Sbjct: 1716 PTSP 1719
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1669 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1722
Query: 360 PTSP 371
PTSP
Sbjct: 1723 PTSP 1726
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1676 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1729
Query: 360 PTSP 371
PTSP
Sbjct: 1730 PTSP 1733
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1683 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1736
Query: 360 PTSP 371
PTSP
Sbjct: 1737 PTSP 1740
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1690 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1743
Query: 360 PTSP 371
PTSP
Sbjct: 1744 PTSP 1747
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P R + T SPSY SPN N +SP ++PTS P YSPSSP
Sbjct: 1750 SPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPN---YSPTPTSPKYTPTS-PSYSPSSP 1805
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
Y+P+SP YSPTSP YSPTSP
Sbjct: 1806 EYTPTSPKYSPTSPKYSPTSP 1826
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP S T SP+Y +SPN +PT+ +++P ++SP SSP Y+P+SP
Sbjct: 1757 TPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTPTSP-KYTPT--SPSYSP-SSPEYTPTSP 1812
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1813 KYSPTSPKYSPTSPKYSPTSP 1833
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1711 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1764
Query: 360 PTSP 371
PTSP
Sbjct: 1765 PTSP 1768
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1718 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1771
Query: 360 PTSP 371
PTSP
Sbjct: 1772 PTSP 1775
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1808 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1863
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1864 SPTSPTYSPTSPKYSPTSPTYSPTSP 1889
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1839 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1889
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1890 KGSTYSPTSPGYSPTSPTYSLTSP 1913
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1832 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1886
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1887 TSPKGSTYSPTSPGYSPTSP 1906
[88][TOP]
>UniRef100_UPI00005A0B21 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 12 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B21
Length = 1922
Score = 79.7 bits (195), Expect = 9e-14
Identities = 65/184 (35%), Positives = 77/184 (41%), Gaps = 61/184 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLD-- 122
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 123 -------------------FGMTPGR----------------------SPISGTPYHEGM 179
GMTPG SP G+P G
Sbjct: 1517 MTPWNQGATPAYDPDPGAGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGP 1576
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPTSP YS
Sbjct: 1577 SSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS 1629
Query: 360 PTSP 371
PTSP
Sbjct: 1630 PTSP 1633
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1597 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1651
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1652 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1682
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1660 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1713
Query: 360 PTSP 371
PTSP
Sbjct: 1714 PTSP 1717
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1667 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1720
Query: 360 PTSP 371
PTSP
Sbjct: 1721 PTSP 1724
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1674 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1727
Query: 360 PTSP 371
PTSP
Sbjct: 1728 PTSP 1731
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1681 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1734
Query: 360 PTSP 371
PTSP
Sbjct: 1735 PTSP 1738
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1688 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1741
Query: 360 PTSP 371
PTSP
Sbjct: 1742 PTSP 1745
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P R + T SPSY SPN N +SP ++PTS P YSPSSP
Sbjct: 1748 SPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPN---YSPTPTSPKYTPTS-PSYSPSSP 1803
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
Y+P+SP YSPTSP YSPTSP
Sbjct: 1804 EYTPTSPKYSPTSPKYSPTSP 1824
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP S T SP+Y +SPN +PT+ +++P ++SP SSP Y+P+SP
Sbjct: 1755 TPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTPTSP-KYTPT--SPSYSP-SSPEYTPTSP 1810
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1811 KYSPTSPKYSPTSPKYSPTSP 1831
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1709 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1762
Query: 360 PTSP 371
PTSP
Sbjct: 1763 PTSP 1766
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1716 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1769
Query: 360 PTSP 371
PTSP
Sbjct: 1770 PTSP 1773
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1806 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1861
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1862 SPTSPTYSPTSPKYSPTSPTYSPTSP 1887
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1837 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1887
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1888 KGSTYSPTSPGYSPTSPTYSLTSP 1911
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1830 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1884
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1885 TSPKGSTYSPTSPGYSPTSP 1904
[89][TOP]
>UniRef100_UPI00005A0B20 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 11 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B20
Length = 1923
Score = 79.7 bits (195), Expect = 9e-14
Identities = 65/184 (35%), Positives = 77/184 (41%), Gaps = 61/184 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLD-- 122
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1458 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1517
Query: 123 -------------------FGMTPGR----------------------SPISGTPYHEGM 179
GMTPG SP G+P G
Sbjct: 1518 MTPWNQGATPAYDPDPGAGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGP 1577
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPTSP YS
Sbjct: 1578 SSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS 1630
Query: 360 PTSP 371
PTSP
Sbjct: 1631 PTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1598 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1652
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1653 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1683
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P R + T SPSY SPN N +SP ++PTS P YSPSSP
Sbjct: 1749 SPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPN---YSPTPTSPKYTPTS-PSYSPSSP 1804
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
Y+P+SP YSPTSP YSPTSP
Sbjct: 1805 EYTPTSPKYSPTSPKYSPTSP 1825
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP S T SP+Y +SPN +PT+ +++P ++SP SSP Y+P+SP
Sbjct: 1756 TPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTPTSP-KYTPT--SPSYSP-SSPEYTPTSP 1811
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1812 KYSPTSPKYSPTSPKYSPTSP 1832
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1763
Query: 360 PTSP 371
PTSP
Sbjct: 1764 PTSP 1767
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1717 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1770
Query: 360 PTSP 371
PTSP
Sbjct: 1771 PTSP 1774
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1807 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1862
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1863 SPTSPTYSPTSPKYSPTSPTYSPTSP 1888
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1838 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1888
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1889 KGSTYSPTSPGYSPTSPTYSLTSP 1912
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1831 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1885
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1886 TSPKGSTYSPTSPGYSPTSP 1905
[90][TOP]
>UniRef100_UPI00005A0B17 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B17
Length = 1788
Score = 79.7 bits (195), Expect = 9e-14
Identities = 65/184 (35%), Positives = 77/184 (41%), Gaps = 61/184 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLD-- 122
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 123 -------------------FGMTPGR----------------------SPISGTPYHEGM 179
GMTPG SP G+P G
Sbjct: 1517 MTPWNQGATPAYDPDPGAGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGP 1576
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPTSP YS
Sbjct: 1577 SSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS 1629
Query: 360 PTSP 371
PTSP
Sbjct: 1630 PTSP 1633
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1597 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1651
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1652 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1682
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1660 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1713
Query: 360 PTSP 371
PTSP
Sbjct: 1714 PTSP 1717
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1667 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1720
Query: 360 PTSP 371
PTSP
Sbjct: 1721 PTSP 1724
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1674 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1727
Query: 360 PTSP 371
PTSP
Sbjct: 1728 PTSP 1731
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1681 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1734
Query: 360 PTSP 371
PTSP
Sbjct: 1735 PTSP 1738
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1688 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1741
Query: 360 PTSP 371
PTSP
Sbjct: 1742 PTSP 1745
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1709 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1762
Query: 360 PTSP 371
PTSP
Sbjct: 1763 PTSP 1766
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1716 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1769
Query: 360 PTSP 371
PTSP
Sbjct: 1770 PTSP 1773
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++PTS P YSP+SP YSP+SP Y+P SP YS
Sbjct: 1730 SPSYSPTSPSY--SPTSP-NYSP--SRPNYTPTS-PSYSPTSPSYSPTSPNYTPMSPNYS 1783
Query: 360 PTSP 371
PTSP
Sbjct: 1784 PTSP 1787
[91][TOP]
>UniRef100_UPI00005A0B16 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B16
Length = 1922
Score = 79.7 bits (195), Expect = 9e-14
Identities = 65/184 (35%), Positives = 77/184 (41%), Gaps = 61/184 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLD-- 122
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1457 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1516
Query: 123 -------------------FGMTPGR----------------------SPISGTPYHEGM 179
GMTPG SP G+P G
Sbjct: 1517 MTPWNQGATPAYDPDPGAGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGP 1576
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y+ SP +SP+ +SP A+ P S GY+P SP YSP+SP YSPTSP YS
Sbjct: 1577 SSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYS 1629
Query: 360 PTSP 371
PTSP
Sbjct: 1630 PTSP 1633
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1597 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1651
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1652 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1682
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1660 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1713
Query: 360 PTSP 371
PTSP
Sbjct: 1714 PTSP 1717
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1667 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1720
Query: 360 PTSP 371
PTSP
Sbjct: 1721 PTSP 1724
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1674 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1727
Query: 360 PTSP 371
PTSP
Sbjct: 1728 PTSP 1731
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1681 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1734
Query: 360 PTSP 371
PTSP
Sbjct: 1735 PTSP 1738
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1688 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1741
Query: 360 PTSP 371
PTSP
Sbjct: 1742 PTSP 1745
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P R + T SPSY SPN N +SP ++PTS P YSPSSP
Sbjct: 1748 SPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPN---YSPTPTSPKYTPTS-PSYSPSSP 1803
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
Y+P+SP YSPTSP YSPTSP
Sbjct: 1804 EYTPTSPKYSPTSPKYSPTSP 1824
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP S T SP+Y +SPN +PT+ +++P ++SP SSP Y+P+SP
Sbjct: 1755 TPTSPSYSPTSPSYSPTSPNYTPMSPNYSPTPTSP-KYTPT--SPSYSP-SSPEYTPTSP 1810
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1811 KYSPTSPKYSPTSPKYSPTSP 1831
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1709 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1762
Query: 360 PTSP 371
PTSP
Sbjct: 1763 PTSP 1766
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1716 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1769
Query: 360 PTSP 371
PTSP
Sbjct: 1770 PTSP 1773
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1806 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1861
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1862 SPTSPTYSPTSPKYSPTSPTYSPTSP 1887
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1837 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 1887
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1888 KGSTYSPTSPGYSPTSPTYSLTSP 1911
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 1830 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 1884
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 1885 TSPKGSTYSPTSPGYSPTSP 1904
[92][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
CBS767 RepID=UPI00003BD271
Length = 1749
Score = 79.7 bits (195), Expect = 9e-14
Identities = 55/149 (36%), Positives = 73/149 (48%), Gaps = 26/149 (17%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL---------QLPSYMDGLDFGMTP------ 137
N+MLGQ+AP+GTG + ++D+ML+ A + Y D D G TP
Sbjct: 1434 NVMLGQMAPLGTGAFDVMVDDKMLQTAPSNIAVTTAAGNETGEYAD--DGGATPYRDYEM 1491
Query: 138 -----------GRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSS 284
G SPI P +G + + S SP+ + FS +F +S
Sbjct: 1492 QDDKIQFEEGAGFSPIHTAPVSDGSGA---LTSYGGATSPSPTSPFSYGATSPSFGGVTS 1548
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
PGY +SP YSP+SP YSPTSP YSPTSP
Sbjct: 1549 PGYGGTSPTYSPTSPSYSPTSPSYSPTSP 1577
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1583 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1636
Query: 360 PTSP 371
PTSP
Sbjct: 1637 PTSP 1640
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1590 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1643
Query: 360 PTSP 371
PTSP
Sbjct: 1644 PTSP 1647
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1597 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1650
Query: 360 PTSP 371
PTSP
Sbjct: 1651 PTSP 1654
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1604 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1657
Query: 360 PTSP 371
PTSP
Sbjct: 1658 PTSP 1661
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1611 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1664
Query: 360 PTSP 371
PTSP
Sbjct: 1665 PTSP 1668
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1618 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1671
Query: 360 PTSP 371
PTSP
Sbjct: 1672 PTSP 1675
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1625 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1678
Query: 360 PTSP 371
PTSP
Sbjct: 1679 PTSP 1682
Score = 63.5 bits (153), Expect = 7e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1632 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPQYS 1685
Query: 360 PTSP 371
PTSP
Sbjct: 1686 PTSP 1689
Score = 63.5 bits (153), Expect = 7e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1667 SPSYSPTSPSY--SPTSP-QYSPT--SPQYSPTS-PSYSPTSPSYSPTSPQYSPTSPQYS 1720
Query: 360 PTSP 371
PTSP
Sbjct: 1721 PTSP 1724
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1639 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPQYSPTSPQYS 1692
Query: 360 PTSP 371
PTSP
Sbjct: 1693 PTSP 1696
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1646 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPTSPSYS 1699
Query: 360 PTSP 371
PTSP
Sbjct: 1700 PTSP 1703
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PQYSPTSPQYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 60.8 bits (146), Expect = 4e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1674 SPSYSPTSP--QYSPTSP-QYSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPTSPQYS 1727
Query: 360 PTSP 371
P SP
Sbjct: 1728 PGSP 1731
[93][TOP]
>UniRef100_UPI00016E658E UPI00016E658E related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E658E
Length = 1628
Score = 79.7 bits (195), Expect = 9e-14
Identities = 65/172 (37%), Positives = 77/172 (44%), Gaps = 49/172 (28%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1455 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGSTGMFFGSAPSPMSGMSPA 1514
Query: 129 MTP---GRSPISG----------TPYHEGM--------------MSPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1515 MTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1574
Query: 228 NDAQFSPYVGGMA---FSPTSSPGYSPSSP-GYSPSSPGYSPTSPGYSPTSP 371
+ + P GG +SPT SP Y P SP GY+P SPGYSPTSP YSPTSP
Sbjct: 1575 PASPYIPSPGGAMSPNYSPT-SPAYEPRSPGGYTPQSPGYSPTSPSYSPTSP 1625
[94][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
RepID=B9WN64_CANDC
Length = 1735
Score = 79.7 bits (195), Expect = 9e-14
Identities = 53/142 (37%), Positives = 73/142 (51%), Gaps = 19/142 (13%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNA-IELQLPSYMDGLDFGMTP-------------- 137
N+MLGQ+AP+GTG L +++ ML+ A + + + D D G TP
Sbjct: 1429 NVMLGQMAPLGTGSFDLMIDERMLQQAPSSIAMETIAD--DGGATPYKEYESARDENIEI 1486
Query: 138 ----GRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
G SPI +EG++ PT+ A SP+ G ++ +SPGY+
Sbjct: 1487 DAGAGFSPIHTAQVNEGIVGGLTSYGGQ----PTSPAATSPFSFG--YNTATSPGYASPG 1540
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
GYSP+SP YSPTSP YSPTSP
Sbjct: 1541 YGYSPTSPSYSPTSPSYSPTSP 1562
Score = 67.0 bits (162), Expect = 6e-10
Identities = 41/92 (44%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTS---- 281
+G +P S T SPSY SP+ + + + SP ++SPTS
Sbjct: 1541 YGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1600
Query: 282 --SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSPGYSPTSP
Sbjct: 1601 PTSPSYSPTSPSYSPTSPSYSPTSPGYSPTSP 1632
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SPGYSPTSP YS
Sbjct: 1582 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPGYSPTSPSYS 1635
Query: 360 PTSP 371
PTSP
Sbjct: 1636 PTSP 1639
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SPGYSP+SP YSPTSP YS
Sbjct: 1589 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPGYSPTSPSYSPTSPSYS 1642
Query: 360 PTSP 371
PTSP
Sbjct: 1643 PTSP 1646
Score = 66.6 bits (161), Expect = 8e-10
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS PGYSP+SP YSP+SP YSPTSP YS
Sbjct: 1596 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PGYSPTSPSYSPTSPSYSPTSPSYS 1649
Query: 360 PTSP 371
PTSP
Sbjct: 1650 PTSP 1653
Score = 65.9 bits (159), Expect = 1e-09
Identities = 45/85 (52%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISG----TPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+PG SP S T SPSY SP+ SPT+ Q+SP ++SPTS P YS
Sbjct: 1624 SPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSP-QYSPT--SPSYSPTS-PQYS 1677
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1678 PTSPSYSPTSPQYSPTSPSYSPTSP 1702
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP G +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1603 SPSYSPTSPSY--SPTSPS-YSPTSPG--YSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1656
Query: 360 PTSP 371
PTSP
Sbjct: 1657 PTSP 1660
Score = 63.2 bits (152), Expect = 9e-09
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1617 SPSYSPTSPGY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPQYSPTSPSYS 1670
Query: 360 PTSP 371
PTSP
Sbjct: 1671 PTSP 1674
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/63 (58%), Positives = 43/63 (68%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1666 SPSY--------SPTSP-QYSPT--SPSYSPTS-PQYSPTSPSYSPTSPQYSPTSPQYSP 1713
Query: 363 TSP 371
TSP
Sbjct: 1714 TSP 1716
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/63 (55%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSP SPGY P
Sbjct: 1680 SPSY--------SPTSP-QYSPT--SPSYSPTS-PQYSPTSPQYSPTSPRYSPGSPGYEP 1727
Query: 363 TSP 371
SP
Sbjct: 1728 KSP 1730
[95][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
RepID=B5RSM9_DEBHA
Length = 1749
Score = 79.7 bits (195), Expect = 9e-14
Identities = 55/149 (36%), Positives = 73/149 (48%), Gaps = 26/149 (17%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL---------QLPSYMDGLDFGMTP------ 137
N+MLGQ+AP+GTG + ++D+ML+ A + Y D D G TP
Sbjct: 1434 NVMLGQMAPLGTGAFDVMVDDKMLQTAPSNIAVTTAAGNETGEYAD--DGGATPYRDYEM 1491
Query: 138 -----------GRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSS 284
G SPI P +G + + S SP+ + FS +F +S
Sbjct: 1492 QDDKIQFEEGAGFSPIHTAPVSDGSGA---LTSYGGATSPSPTSPFSYGATSPSFGGVTS 1548
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
PGY +SP YSP+SP YSPTSP YSPTSP
Sbjct: 1549 PGYGGTSPTYSPTSPSYSPTSPSYSPTSP 1577
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1583 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1636
Query: 360 PTSP 371
PTSP
Sbjct: 1637 PTSP 1640
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1590 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1643
Query: 360 PTSP 371
PTSP
Sbjct: 1644 PTSP 1647
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1597 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1650
Query: 360 PTSP 371
PTSP
Sbjct: 1651 PTSP 1654
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1604 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1657
Query: 360 PTSP 371
PTSP
Sbjct: 1658 PTSP 1661
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1611 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1664
Query: 360 PTSP 371
PTSP
Sbjct: 1665 PTSP 1668
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1618 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1671
Query: 360 PTSP 371
PTSP
Sbjct: 1672 PTSP 1675
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1625 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1678
Query: 360 PTSP 371
PTSP
Sbjct: 1679 PTSP 1682
Score = 63.5 bits (153), Expect = 7e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1632 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPQYS 1685
Query: 360 PTSP 371
PTSP
Sbjct: 1686 PTSP 1689
Score = 63.5 bits (153), Expect = 7e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1667 SPSYSPTSPSY--SPTSP-QYSPT--SPQYSPTS-PSYSPTSPSYSPTSPQYSPTSPQYS 1720
Query: 360 PTSP 371
PTSP
Sbjct: 1721 PTSP 1724
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1639 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPQYSPTSPQYS 1692
Query: 360 PTSP 371
PTSP
Sbjct: 1693 PTSP 1696
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1646 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPTSPSYS 1699
Query: 360 PTSP 371
PTSP
Sbjct: 1700 PTSP 1703
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PQYSPTSPQYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 60.8 bits (146), Expect = 4e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1674 SPSYSPTSP--QYSPTSP-QYSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPTSPQYS 1727
Query: 360 PTSP 371
P SP
Sbjct: 1728 PGSP 1731
[96][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151A8B3
Length = 1018
Score = 79.0 bits (193), Expect = 2e-13
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 38/161 (23%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNA-IELQLP--------SYMDGLDFGMTP------ 137
N++LGQLAP+GTG + ++D++L+++ + +P +Y D D G TP
Sbjct: 695 NVVLGQLAPLGTGAFDVMVDDKILQSSPSNMSVPVGAAEGAGAYAD--DGGATPYREYDM 752
Query: 138 -----------GRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQF---SPYVGGMA--- 266
G SPI P +G + + SPT+ + SP GG +
Sbjct: 753 EDDKIQFEEGAGFSPIHTAPVSDGAGALTAYGGQPGSPSPTSPFAYGATSPAYGGASPGY 812
Query: 267 ------FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SPT SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 813 GVTSPTYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 852
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 844 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 897
Query: 360 PTSP 371
PTSP
Sbjct: 898 PTSP 901
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 851 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 904
Query: 360 PTSP 371
PTSP
Sbjct: 905 PTSP 908
Score = 60.1 bits (144), Expect = 7e-08
Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 858 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 911
Query: 360 PT 365
PT
Sbjct: 912 PT 913
[97][TOP]
>UniRef100_UPI00005A0B1A PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 6 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0B1A
Length = 1767
Score = 79.0 bits (193), Expect = 2e-13
Identities = 65/186 (34%), Positives = 83/186 (44%), Gaps = 63/186 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISG-----TPY 167
NIMLGQLAP GTG L L+ E K +E +P+ + GL GR P+ G TP+
Sbjct: 1442 NIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGLG---AAGRDPMGGISPAMTPW 1496
Query: 168 HEGM----------------------------------MSPSYMLSPNLRLSPTNDAQFS 245
++G SP++ +P SP + S
Sbjct: 1497 NQGATPAYGAWSPRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPG---SPGSPGPSS 1553
Query: 246 PYV--------GGM--AFSPTS--------------SPGYSPSSPGYSPSSPGYSPTSPG 353
PY+ G M ++SPTS SP YSP+SP YSP+SP YSPTSP
Sbjct: 1554 PYIPSPGELSCGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN 1613
Query: 354 YSPTSP 371
YSPTSP
Sbjct: 1614 YSPTSP 1619
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 1576 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 1630
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1631 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1661
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1632 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1685
Query: 360 PTSP 371
PTSP
Sbjct: 1686 PTSP 1689
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1639 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1692
Query: 360 PTSP 371
PTSP
Sbjct: 1693 PTSP 1696
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1646 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1699
Query: 360 PTSP 371
PTSP
Sbjct: 1700 PTSP 1703
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1660 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1713
Query: 360 PTSP 371
PTSP
Sbjct: 1714 PTSP 1717
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1667 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1720
Query: 360 PTSP 371
PTSP
Sbjct: 1721 PTSP 1724
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPS P Y+PTSP YS
Sbjct: 1688 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPSRPNYTPTSPSYS 1741
Query: 360 PTSP 371
PTSP
Sbjct: 1742 PTSP 1745
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPS P Y+P+SP YSPTSP YS
Sbjct: 1695 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPSRPNYTPTSPSYSPTSPSYS 1748
Query: 360 PTSP 371
PTSP
Sbjct: 1749 PTSP 1752
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++PTS P YSP+SP YSP+SP Y+P SP YS
Sbjct: 1709 SPSYSPTSPSY--SPTSP-NYSP--SRPNYTPTS-PSYSPTSPSYSPTSPNYTPMSPNYS 1762
Query: 360 PTSP 371
PTSP
Sbjct: 1763 PTSP 1766
[98][TOP]
>UniRef100_Q9BMP3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis
RepID=Q9BMP3_MONBE
Length = 1743
Score = 79.0 bits (193), Expect = 2e-13
Identities = 62/163 (38%), Positives = 82/163 (50%), Gaps = 40/163 (24%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPS----YMDGLDF--------------- 125
NIMLGQ+ P GTG L L+ + L++A+ ++ P + G D
Sbjct: 1377 NIMLGQVIPGGTGCFDLLLDQDRLQHAVPVE-PGLGGLFAKGGDANGAATPWGEGNATPF 1435
Query: 126 ---GMTP----------GRSPISG-TPYHEGMMSPSYMLSP-NLRLSP----TNDAQFSP 248
GMTP G++PI G +P G SP MLSP + SP + SP
Sbjct: 1436 GMGGMTPQNASSPYFGAGQTPIGGFSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSP 1495
Query: 249 YVGGMA--FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
V + + P+S GYSP+SP YSP+SPG SPTSPG+SP SP
Sbjct: 1496 GVVSASPFYDPSSPAGYSPTSPSYSPTSPGMSPTSPGFSPASP 1538
Score = 73.9 bits (180), Expect = 5e-12
Identities = 48/90 (53%), Positives = 54/90 (60%), Gaps = 10/90 (11%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-LSPTNDAQFSPYVG-GMAFSPTS------- 281
+P SP S P G SPSY SP+ SP +AQ Y ++SPTS
Sbjct: 1552 SPSYSPTS--PNVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSPTSPSYSPTSPNVKSPT 1609
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPGYSP+SPGYSPSSP YSPTSP YSPTSP
Sbjct: 1610 SPGYSPTSPGYSPSSPSYSPTSPNYSPTSP 1639
Score = 69.3 bits (168), Expect = 1e-10
Identities = 49/94 (52%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +3
Query: 93 QLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAF 269
Q PSY +P SP S P + SP+Y SP+ SPT+ SP G +
Sbjct: 1566 QSPSYSP-----TSPSYSPSS--PAYNAQ-SPAYSPTSPSY--SPTSPNVKSPTSPG--Y 1613
Query: 270 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPTS PGYSPSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1614 SPTS-PGYSPSSPSYSPTSPNYSPTSPSYSPTSP 1646
Score = 68.6 bits (166), Expect = 2e-10
Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN++ SPT+ +SP G +SP SSP YSP+SP YSP+SP YSPTSP YS
Sbjct: 1595 SPSYSPTSPNVK-SPTSPG-YSPTSPG--YSP-SSPSYSPTSPNYSPTSPSYSPTSPNYS 1649
Query: 360 PTSP 371
PTSP
Sbjct: 1650 PTSP 1653
Score = 68.2 bits (165), Expect = 3e-10
Identities = 43/83 (51%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
G +P S T + SPSY SPN SPT+ + +SP +SPTS P YSP+
Sbjct: 1619 GYSPSSPSYSPTSPNYSPTSPSYSPTSPNY--SPTSPS-YSPTSPN--YSPTS-PSYSPT 1672
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1673 SPNYSPTSPSYSPTSPNYSPTSP 1695
Score = 66.6 bits (161), Expect = 8e-10
Identities = 45/81 (55%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S P + SPSY SPN SPT+ + +SP +SPTS P YSP+SP
Sbjct: 1610 SPGYSPTS--PGYSPS-SPSYSPTSPNY--SPTSPS-YSPTSPN--YSPTS-PSYSPTSP 1660
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1661 NYSPTSPSYSPTSPNYSPTSP 1681
Score = 62.4 bits (150), Expect = 2e-08
Identities = 45/95 (47%), Positives = 53/95 (55%), Gaps = 15/95 (15%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+P S T + SPSY SPN SPT+ + +SP +SPTS SP
Sbjct: 1649 SPTSPSYSPTSPNYSPTSPSYSPTSPNY--SPTSPS-YSPTSPN--YSPTSPSYSPTSPN 1703
Query: 291 YSPSSPGYSPS--------SPGYSPTSPGYSPTSP 371
YSP+SP YSP+ SPGYSPTSPGYSPTSP
Sbjct: 1704 YSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSP 1738
Score = 61.2 bits (147), Expect = 3e-08
Identities = 41/86 (47%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+P S T + SPSY SPN SPT+ + +SP +SPTS SP
Sbjct: 1635 SPTSPSYSPTSPNYSPTSPSYSPTSPNY--SPTSPS-YSPTSPN--YSPTSPSYSPTSPN 1689
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTS 368
YSP+SP YSP+SP YSPTSP YSPT+
Sbjct: 1690 YSPTSPSYSPTSPNYSPTSPSYSPTA 1715
Score = 60.5 bits (145), Expect = 6e-08
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTSSPGYSPS 302
+P S T + SPSY SPN + + + SP ++SPT++ P+
Sbjct: 1663 SPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTANGTSGPT 1722
Query: 303 SPGYSPSSPGYSPTSPGYSPT 365
SPGYSP+SPGYSPTSPGYSP+
Sbjct: 1723 SPGYSPTSPGYSPTSPGYSPS 1743
[99][TOP]
>UniRef100_A9V5W6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
RepID=A9V5W6_MONBE
Length = 1307
Score = 79.0 bits (193), Expect = 2e-13
Identities = 62/163 (38%), Positives = 82/163 (50%), Gaps = 40/163 (24%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPS----YMDGLDF--------------- 125
NIMLGQ+ P GTG L L+ + L++A+ ++ P + G D
Sbjct: 941 NIMLGQVIPGGTGCFDLLLDQDRLQHAVPVE-PGLGGLFAKGGDANGAATPWGEGNATPF 999
Query: 126 ---GMTP----------GRSPISG-TPYHEGMMSPSYMLSP-NLRLSP----TNDAQFSP 248
GMTP G++PI G +P G SP MLSP + SP + SP
Sbjct: 1000 GMGGMTPQNASSPYLGAGQTPIGGFSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSP 1059
Query: 249 YVGGMA--FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
V + + P+S GYSP+SP YSP+SPG SPTSPG+SP SP
Sbjct: 1060 GVVSASPFYDPSSPAGYSPTSPSYSPTSPGMSPTSPGFSPASP 1102
Score = 73.9 bits (180), Expect = 5e-12
Identities = 48/90 (53%), Positives = 54/90 (60%), Gaps = 10/90 (11%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-LSPTNDAQFSPYVG-GMAFSPTS------- 281
+P SP S P G SPSY SP+ SP +AQ Y ++SPTS
Sbjct: 1116 SPSYSPTS--PNVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSPTSPSYSPTSPNVKSPT 1173
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPGYSP+SPGYSPSSP YSPTSP YSPTSP
Sbjct: 1174 SPGYSPTSPGYSPSSPSYSPTSPNYSPTSP 1203
Score = 69.3 bits (168), Expect = 1e-10
Identities = 49/94 (52%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +3
Query: 93 QLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAF 269
Q PSY +P SP S P + SP+Y SP+ SPT+ SP G +
Sbjct: 1130 QSPSYSP-----TSPSYSPSS--PAYNAQ-SPAYSPTSPSY--SPTSPNVKSPTSPG--Y 1177
Query: 270 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPTS PGYSPSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1178 SPTS-PGYSPSSPSYSPTSPNYSPTSPSYSPTSP 1210
Score = 68.6 bits (166), Expect = 2e-10
Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN++ SPT+ +SP G +SP SSP YSP+SP YSP+SP YSPTSP YS
Sbjct: 1159 SPSYSPTSPNVK-SPTSPG-YSPTSPG--YSP-SSPSYSPTSPNYSPTSPSYSPTSPNYS 1213
Query: 360 PTSP 371
PTSP
Sbjct: 1214 PTSP 1217
Score = 68.2 bits (165), Expect = 3e-10
Identities = 43/83 (51%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
G +P S T + SPSY SPN SPT+ + +SP +SPTS P YSP+
Sbjct: 1183 GYSPSSPSYSPTSPNYSPTSPSYSPTSPNY--SPTSPS-YSPTSPN--YSPTS-PSYSPT 1236
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1237 SPNYSPTSPSYSPTSPNYSPTSP 1259
Score = 66.6 bits (161), Expect = 8e-10
Identities = 45/81 (55%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S P + SPSY SPN SPT+ + +SP +SPTS P YSP+SP
Sbjct: 1174 SPGYSPTS--PGYSPS-SPSYSPTSPNY--SPTSPS-YSPTSPN--YSPTS-PSYSPTSP 1224
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1225 NYSPTSPSYSPTSPNYSPTSP 1245
Score = 62.4 bits (150), Expect = 2e-08
Identities = 45/95 (47%), Positives = 53/95 (55%), Gaps = 15/95 (15%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+P S T + SPSY SPN SPT+ + +SP +SPTS SP
Sbjct: 1213 SPTSPSYSPTSPNYSPTSPSYSPTSPNY--SPTSPS-YSPTSPN--YSPTSPSYSPTSPN 1267
Query: 291 YSPSSPGYSPS--------SPGYSPTSPGYSPTSP 371
YSP+SP YSP+ SPGYSPTSPGYSPTSP
Sbjct: 1268 YSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSP 1302
Score = 61.2 bits (147), Expect = 3e-08
Identities = 41/86 (47%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+P S T + SPSY SPN SPT+ + +SP +SPTS SP
Sbjct: 1199 SPTSPSYSPTSPNYSPTSPSYSPTSPNY--SPTSPS-YSPTSPN--YSPTSPSYSPTSPN 1253
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTS 368
YSP+SP YSP+SP YSPTSP YSPT+
Sbjct: 1254 YSPTSPSYSPTSPNYSPTSPSYSPTA 1279
Score = 60.5 bits (145), Expect = 6e-08
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTSSPGYSPS 302
+P S T + SPSY SPN + + + SP ++SPT++ P+
Sbjct: 1227 SPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTANGTSGPT 1286
Query: 303 SPGYSPSSPGYSPTSPGYSPT 365
SPGYSP+SPGYSPTSPGYSP+
Sbjct: 1287 SPGYSPTSPGYSPTSPGYSPS 1307
[100][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
RepID=C4R4Y0_PICPG
Length = 1743
Score = 79.0 bits (193), Expect = 2e-13
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 39/162 (24%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPS-------------------------- 104
N+MLGQLAP+GTG + +++++L + P+
Sbjct: 1430 NVMLGQLAPMGTGAFDVMIDEKLLTSLPADYAPTMPLFKGKATQGSATPYDNNAQYDDEF 1489
Query: 105 -YMDGLDFGMTP------GRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGM 263
+ D D +P G G + G+ SP SP L + A SP
Sbjct: 1490 NHDDVADVMFSPMAETGSGDDRSGGLTEYAGIQSPYQPTSPGLSATSPGFAPTSP----- 1544
Query: 264 AFSPTS------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
F+PTS SPGYSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1545 GFAPTSPRYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSP 1586
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1557 SPGYSPTSPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1607
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1608 SYSPTSPSYSPTSPSYSPTSP 1628
Score = 62.0 bits (149), Expect = 2e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1592 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPTSPQYS 1645
Query: 360 PTSP 371
PTSP
Sbjct: 1646 PTSP 1649
Score = 62.0 bits (149), Expect = 2e-08
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1613 SPSYSPTSPSY--SPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1666
Query: 360 PTSP 371
PTSP
Sbjct: 1667 PTSP 1670
Score = 62.0 bits (149), Expect = 2e-08
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1620 SPSYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1673
Query: 360 PTSP 371
PTSP
Sbjct: 1674 PTSP 1677
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1599 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1652
Query: 360 PTSP 371
PTSP
Sbjct: 1653 PTSP 1656
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1634 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1687
Query: 360 PTSP 371
PTSP
Sbjct: 1688 PTSP 1691
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1641 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1694
Query: 360 PTSP 371
PTSP
Sbjct: 1695 PTSP 1698
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1648 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1701
Query: 360 PTSP 371
PTSP
Sbjct: 1702 PTSP 1705
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1655 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1708
Query: 360 PTSP 371
PTSP
Sbjct: 1709 PTSP 1712
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1662 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1715
Query: 360 PTSP 371
PTSP
Sbjct: 1716 PTSP 1719
Score = 58.5 bits (140), Expect = 2e-07
Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1669 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1722
Query: 360 PTSP 371
P SP
Sbjct: 1723 PASP 1726
[101][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
RepID=A1YIA7_ISSOR
Length = 1647
Score = 79.0 bits (193), Expect = 2e-13
Identities = 54/141 (38%), Positives = 72/141 (51%), Gaps = 18/141 (12%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGM-TPGRSPISGTPYHEGM 179
NI+LGQ+AP GTG +YL+DE L A+ + P +D + T G + G + +
Sbjct: 1352 NIILGQMAPFGTGSFDVYLDDEKLA-ALPSENP--VDVISTAKDTKGSMTVYGDDHFKDD 1408
Query: 180 MSPSYMLSPNLRLSP--------TNDAQFSPYVGG--MAFSPTS-------SPGYSPSSP 308
+ M + N+ SP F+ Y G A+ PTS SP Y P+SP
Sbjct: 1409 IIDIPMAADNVAFSPLITAGSGDDRSGGFTEYGSGNMSAYQPTSPFGYGATSPSYGPTSP 1468
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
Y P+SP YSPTSP YSPTSP
Sbjct: 1469 SYGPTSPSYSPTSPAYSPTSP 1489
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1495 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYS 1548
Query: 360 PTSP 371
PTSP
Sbjct: 1549 PTSP 1552
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1502 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1555
Query: 360 PTSP 371
PTSP
Sbjct: 1556 PTSP 1559
Score = 62.4 bits (150), Expect = 2e-08
Identities = 39/70 (55%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSP 341
SP+Y SP SPT+ A +SP ++SPTS SP YSP+SP YSP+SP YSP
Sbjct: 1509 SPAYSPTSP--AYSPTSPA-YSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1563
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1564 TSPQYSPTSP 1573
Score = 62.0 bits (149), Expect = 2e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1530 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPTSPQYS 1583
Query: 360 PTSP 371
PTSP
Sbjct: 1584 PTSP 1587
Score = 62.0 bits (149), Expect = 2e-08
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1551 SPSYSPTSPSY--SPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1604
Query: 360 PTSP 371
PTSP
Sbjct: 1605 PTSP 1608
Score = 62.0 bits (149), Expect = 2e-08
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1558 SPSYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1611
Query: 360 PTSP 371
PTSP
Sbjct: 1612 PTSP 1615
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1537 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1590
Query: 360 PTSP 371
PTSP
Sbjct: 1591 PTSP 1594
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1572 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1625
Query: 360 PTSP 371
PTSP
Sbjct: 1626 PTSP 1629
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1579 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1632
Query: 360 PTSP 371
PTSP
Sbjct: 1633 PTSP 1636
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1586 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1639
Query: 360 PTSP 371
PTSP
Sbjct: 1640 PTSP 1643
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1593 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPSYS 1646
Query: 360 P 362
P
Sbjct: 1647 P 1647
[102][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
Tax=Pichia guilliermondii RepID=RPB1_PICGU
Length = 1579
Score = 79.0 bits (193), Expect = 2e-13
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 38/161 (23%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNA-IELQLP--------SYMDGLDFGMTP------ 137
N++LGQLAP+GTG + ++D++L+++ + +P +Y D D G TP
Sbjct: 1261 NVVLGQLAPLGTGAFDVMVDDKILQSSPSNMSVPVGAAEGAGAYAD--DGGATPYREYDM 1318
Query: 138 -----------GRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQF---SPYVGGMA--- 266
G SPI P +G + + SPT+ + SP GG +
Sbjct: 1319 EDDKIQFEEGAGFSPIHTAPVSDGAGALTAYGGQPGSPSPTSPFAYGATSPAYGGASPGY 1378
Query: 267 ------FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SPT SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1379 GVTSPTYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1418
Score = 65.1 bits (157), Expect = 2e-09
Identities = 36/63 (57%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP L +SP ++SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1494 SPSY--SPTSPLYSPTSPSYSPT--SPSYSPTS-PSYSPTSPSYSPTSPQYSPTSPAYSP 1548
Query: 363 TSP 371
TSP
Sbjct: 1549 TSP 1551
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1410 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1463
Query: 360 PTSP 371
PTSP
Sbjct: 1464 PTSP 1467
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1417 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1470
Query: 360 PTSP 371
PTSP
Sbjct: 1471 PTSP 1474
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1424 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1477
Query: 360 PTSP 371
PTSP
Sbjct: 1478 PTSP 1481
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1431 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1484
Query: 360 PTSP 371
PTSP
Sbjct: 1485 PTSP 1488
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1438 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1491
Query: 360 PTSP 371
PTSP
Sbjct: 1492 PTSP 1495
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1445 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1498
Query: 360 PTSP 371
PTSP
Sbjct: 1499 PTSP 1502
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSP 341
SPSY SP+ SPT+ + +SP ++SPTS SP YSP+SP YSP+SP YSP
Sbjct: 1473 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPLYSPTSPSYSPTSPSYSPTSPSYSP 1527
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1528 TSPSYSPTSP 1537
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1487 SPSYSPTSPSY--SPTSPL-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPQYS 1540
Query: 360 PTSP 371
PTSP
Sbjct: 1541 PTSP 1544
Score = 57.8 bits (138), Expect = 4e-07
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSP SP YS
Sbjct: 1508 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PQYSPTSPAYSPTSPQYSPNSPQYS 1561
Query: 360 PTSP 371
P SP
Sbjct: 1562 PRSP 1565
[103][TOP]
>UniRef100_P35074 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
briggsae RepID=RPB1_CAEBR
Length = 1853
Score = 79.0 bits (193), Expect = 2e-13
Identities = 61/156 (39%), Positives = 77/156 (49%), Gaps = 33/156 (21%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFG----------MTPGRSPI 152
NIMLGQLA GTG L L+ E K+ +E+ M +G +P SP
Sbjct: 1450 NIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGAGIYGGGFAGSPSREFSPAHSPW 1509
Query: 153 SG--TPYHEGMMSPSYMLSPNLRLSPTN--DAQFSPYVGGMAFSPTS------------- 281
+ TP + G SP+ +SP+ SP D SP+ G +SP S
Sbjct: 1510 NSGVTPNYSGPWSPTGGMSPSAGFSPAGNLDGGASPFNEG-GWSPASPGDPLGALSPRTP 1568
Query: 282 -----SPG-YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPG YSP+SPG+S +SP YSPTSP YSPTSP
Sbjct: 1569 AYGGMSPGVYSPASPGFSMTSPHYSPTSPSYSPTSP 1604
Score = 70.9 bits (172), Expect = 4e-11
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S + + +SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1596 SPSYSPTSPAHHGQSPVSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1649
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1650 SYSPTSPSYSPTSPSYSPTSP 1670
Score = 63.2 bits (152), Expect = 9e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPSSP YSP+SP YSPTSP YS
Sbjct: 1641 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPSSPRYSPTSPTYSPTSPTYS 1694
Query: 360 PTSP 371
PTSP
Sbjct: 1695 PTSP 1698
Score = 63.2 bits (152), Expect = 9e-09
Identities = 43/80 (53%), Positives = 47/80 (58%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P SP S T SP+Y SP SPT Y G +SP SSP YSPSSP
Sbjct: 1683 SPTYSPTSPT---YSPTSPTY--SPT---SPTYSPTSPSYEG---YSP-SSPKYSPSSPT 1730
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1731 YSPTSPSYSPTSPQYSPTSP 1750
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1655 SPSYSPTSPSY--SPTSPS-YSP--SSPRYSPTS-PTYSPTSPTYSPTSPTYSPTSPTYS 1708
Query: 360 PTSP 371
PTSP
Sbjct: 1709 PTSP 1712
Score = 60.8 bits (146), Expect = 4e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SP SSP YSP+SP YSP+SP YSPTSP YS
Sbjct: 1648 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSP-SSPRYSPTSPTYSPTSPTYSPTSPTYS 1701
Query: 360 PTSP 371
PTSP
Sbjct: 1702 PTSP 1705
Score = 60.8 bits (146), Expect = 4e-08
Identities = 40/80 (50%), Positives = 50/80 (62%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P SP S P +EG S SP+ SPT +SP ++SPTS P YSP+SP
Sbjct: 1704 SPTYSPTS--PSYEGYSPSSPKYSPS---SPT----YSPT--SPSYSPTS-PQYSPTSPQ 1751
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSPSSP Y+P+SP Y+PTSP
Sbjct: 1752 YSPSSPTYTPSSPTYNPTSP 1771
Score = 60.5 bits (145), Expect = 6e-08
Identities = 37/85 (43%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSP-SYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPG----YS 296
+P +P S + SP S SP + Q+SP SP PG YS
Sbjct: 1763 SPTYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYS 1822
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
PSSP YSPSSP YSP SP YSP+SP
Sbjct: 1823 PSSPTYSPSSPTYSPASPSYSPSSP 1847
[104][TOP]
>UniRef100_B4E3V7 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B4E3V7_HUMAN
Length = 1935
Score = 78.6 bits (192), Expect = 2e-13
Identities = 64/172 (37%), Positives = 77/172 (44%), Gaps = 49/172 (28%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------QLPSYMDGLDFG 128
NIMLGQLAP GTG L L+ E K +E+ PS M G+
Sbjct: 1422 NIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA 1481
Query: 129 MTP---GRSPISG----------TPYHEGM--------------MSPSYMLSPNLRLSPT 227
MTP G +P G TP G SP++ +P SP
Sbjct: 1482 MTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPG 1541
Query: 228 NDAQFSPYVGGM---AFSPTSSPGYSPSSP-GYSPSSPGYSPTSPGYSPTSP 371
+ + P GG ++SPT SP Y P SP GY+P SP YSPTSP YSPTSP
Sbjct: 1542 PSSPYIPSPGGAMSPSYSPT-SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSP 1592
Score = 68.9 bits (167), Expect = 2e-10
Identities = 43/91 (47%), Positives = 53/91 (58%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT 278
P+Y G TP S T SPSY + + SPT+ + +SP ++SPT
Sbjct: 1563 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSS-NYSPTSPS-YSPT--SPSYSPT 1618
Query: 279 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
S P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1619 S-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1648
Score = 65.5 bits (158), Expect = 2e-09
Identities = 42/81 (51%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S S T SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1595 SPTSSNYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1648
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSP 1669
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1703 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1626 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1679
Query: 360 PTSP 371
PTSP
Sbjct: 1680 PTSP 1683
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1633 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1686
Query: 360 PTSP 371
PTSP
Sbjct: 1687 PTSP 1690
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1640 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1693
Query: 360 PTSP 371
PTSP
Sbjct: 1694 PTSP 1697
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1647 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1700
Query: 360 PTSP 371
PTSP
Sbjct: 1701 PTSP 1704
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 1696 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 61.6 bits (148), Expect = 3e-08
Identities = 38/79 (48%), Positives = 44/79 (55%), Gaps = 16/79 (20%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTS-------------SPGYSPSSPGY 314
SPSY SPN + N + SP ++SPTS SP Y+PSSP Y
Sbjct: 1731 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 1790
Query: 315 SPSSPGYSPTSPGYSPTSP 371
SPSSP YSPTSP Y+PTSP
Sbjct: 1791 SPSSPSYSPTSPKYTPTSP 1809
Score = 59.7 bits (143), Expect = 1e-07
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 1742 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 1793
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 1794 SPSYSPTSPKYTPTSPPYSPSSP 1816
Score = 59.3 bits (142), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1819 TPTSPKFSPTSPKYSPTSPKY--SPTGPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 1874
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1875 SPTSPTYSPTSPQYSPTSPTYSPTSP 1900
Score = 57.8 bits (138), Expect = 4e-07
Identities = 32/63 (50%), Positives = 38/63 (60%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP+ SP Q Y SSP YSP+SP Y+P+SP YSP+SP Y+P
Sbjct: 1766 SPSY--SPS---SPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPPYSPSSPEYTP 1820
Query: 363 TSP 371
TSP
Sbjct: 1821 TSP 1823
Score = 54.7 bits (130), Expect = 3e-06
Identities = 31/63 (49%), Positives = 38/63 (60%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP +SP ++PTS P +SP+SP YSP+SP YSPT P YSP
Sbjct: 1794 SPSY--SPTSPKYTPTSPPYSP--SSPEYTPTS-PKFSPTSPKYSPTSPKYSPTGPTYSP 1848
Query: 363 TSP 371
T+P
Sbjct: 1849 TTP 1851
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 1850 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPQYSPTS-PTYSPTSP 1900
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 1901 KGSTYSPTSPGYSPTSPTYSLTSP 1924
[105][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
RepID=C4YN85_CANAL
Length = 1742
Score = 78.6 bits (192), Expect = 2e-13
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNA-IELQLPSYMDG----------------LDFGM 131
N+MLGQ+AP+GTG L ++D ML+ A + + DG +D
Sbjct: 1429 NVMLGQMAPLGTGSFDLMVDDRMLQKAPSSMAMDDIADGGGATPYKDYENARDENIDIDA 1488
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
G SPI +EG + PT+ A SP+ G ++ +SPGY+ G
Sbjct: 1489 GAGFSPIHIAQMNEGNIGGLTSYGGQ----PTSPAATSPFSYG--YNSITSPGYTSPGYG 1542
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP Y+PTSP
Sbjct: 1543 YSPTSPSYSPTSPSYAPTSP 1562
Score = 64.7 bits (156), Expect = 3e-09
Identities = 37/63 (58%), Positives = 43/63 (68%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1617 SPSY--------SPTSP-QYSPT--SPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPSYSP 1664
Query: 363 TSP 371
TSP
Sbjct: 1665 TSP 1667
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1631 SPSYSPTSPSY--SPTSPS-YSPT--SPAYSPTS-PSYSPTSPSYSPTSPQYSPTSPSYS 1684
Query: 360 PTSP 371
PTSP
Sbjct: 1685 PTSP 1688
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSP 341
SPSY SP SPT+ A +SP ++SPTS SP YSP+SP YSP+SP YSP
Sbjct: 1596 SPSYAPTSP--AYSPTSPA-YSPT--SPSYSPTSPQYSPTSPSYSPTSPSYSPTSPSYSP 1650
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1651 TSPAYSPTSP 1660
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ A +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1638 SPSYSPTSPSY--SPTSPA-YSPT--SPSYSPTS-PSYSPTSPQYSPTSPSYSPTSPQYS 1691
Query: 360 PTSP 371
PTSP
Sbjct: 1692 PTSP 1695
Score = 63.5 bits (153), Expect = 7e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1659 SPSYSPTSPSY--SPTSP-QYSPT--SPSYSPTS-PQYSPTSPSYSPTSPQYSPTSPQYS 1712
Query: 360 PTSP 371
PTSP
Sbjct: 1713 PTSP 1716
Score = 62.0 bits (149), Expect = 2e-08
Identities = 36/69 (52%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SPSY SP +SP ++SPTS SP YSP+SP YSP+SP YSPT
Sbjct: 1645 SPSY--SPTSPAYSPTSPSYSPT--SPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPT 1700
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 1701 SPQYSPTSP 1709
Score = 58.9 bits (141), Expect = 2e-07
Identities = 36/63 (57%), Positives = 42/63 (66%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SPT+ Q+SP ++SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1680 SPSY--------SPTSP-QYSPT--SPSYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYSP 1727
Query: 363 TSP 371
SP
Sbjct: 1728 GSP 1730
[106][TOP]
>UniRef100_B0XAQ9 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
RepID=B0XAQ9_CULQU
Length = 1874
Score = 77.8 bits (190), Expect = 3e-13
Identities = 45/87 (51%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEG-MMSPSY----MLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPG 290
GM+P SP+ G+P G MSP + SP+ S N A SP +SPTS P
Sbjct: 1527 GMSPSWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGASPGYSPTS-PS 1585
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1586 YSPTSPNYSPTSPRYSPTSPNYSPTSP 1612
Score = 70.1 bits (170), Expect = 7e-11
Identities = 40/63 (63%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP SPT+ + +SP A+SPTS P YSPSSP YSP+SP YSPTSP YSP
Sbjct: 1645 SPSY--SPTSPYSPTSPS-YSPT--SPAYSPTS-PSYSPSSPSYSPTSPSYSPTSPSYSP 1698
Query: 363 TSP 371
TSP
Sbjct: 1699 TSP 1701
Score = 67.0 bits (162), Expect = 6e-10
Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 15/78 (19%)
Frame = +3
Query: 183 SPSY-----MLSPNLRLSPTNDAQFSP----YVGGMAFSPTS------SPGYSPSSPGYS 317
SPSY + SP +P++ A +SP Y +SPTS SP YSP+SP YS
Sbjct: 1618 SPSYSPTSPLYSPTATYAPSSPA-YSPTSPSYSPTSPYSPTSPSYSPTSPAYSPTSPSYS 1676
Query: 318 PSSPGYSPTSPGYSPTSP 371
PSSP YSPTSP YSPTSP
Sbjct: 1677 PSSPSYSPTSPSYSPTSP 1694
Score = 65.9 bits (159), Expect = 1e-09
Identities = 46/103 (44%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISG----TPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGM 263
P+Y G +PG SP S T + SP Y SPN + N + SP
Sbjct: 1565 PNYAAASPGGASPGYSPTSPSYSPTSPNYSPTSPRYSPTSPNYSPTSPNYSPTSPSYSPT 1624
Query: 264 A--FSPT-----SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+ +SPT SSP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1625 SPLYSPTATYAPSSPAYSPTSPSYSPTSP-YSPTSPSYSPTSP 1666
Score = 63.9 bits (154), Expect = 5e-09
Identities = 40/85 (47%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYV-----GGMAFSPTSSPGYS 296
+P SP S P H S S + + SPT A++SP + G +SPTS P Y+
Sbjct: 1776 SPSYSPSS--PQHSPGSSGSNFMVNSPTYSPTT-ARYSPNMSSYSPGSQKYSPTS-PVYT 1831
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSPSSP YSPT GYSP+SP
Sbjct: 1832 PTSPHYSPSSPAYSPTGQGYSPSSP 1856
Score = 63.5 bits (153), Expect = 7e-09
Identities = 40/81 (49%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T SPSY SPN + + + SP +SP SSP YSP+SP
Sbjct: 1676 SPSSPSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPN-----YSP-SSPHYSPTSP 1729
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSPTSP YSPTSP
Sbjct: 1730 SYSPSSPKYSPTSPSYSPTSP 1750
Score = 60.5 bits (145), Expect = 6e-08
Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISG----TPYHEGMMSPSYMLSPNLRLSPTNDAQF--SPYVGGMAFSPTSSPGY 293
TP SP S + H SPSY S + + SPT+ + SP GG SP Y
Sbjct: 1707 TPSYSPTSPNYSPSSPHYSPTSPSYSPS-SPKYSPTSPSYSPTSPSYGG-------SPQY 1758
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
+P+SP YSP+SP YSPTSP YSP+SP
Sbjct: 1759 TPASPQYSPTSPKYSPTSPSYSPSSP 1784
[107][TOP]
>UniRef100_C5GKA7 DNA-directed RNA polymerase n=2 Tax=Ajellomyces dermatitidis
RepID=C5GKA7_AJEDR
Length = 1746
Score = 77.4 bits (189), Expect = 5e-13
Identities = 60/178 (33%), Positives = 75/178 (42%), Gaps = 55/178 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGL--------------------- 119
N++LGQ+AP GTGE +YL+ +ML + DG
Sbjct: 1456 NLILGQMAPAGTGEFDVYLDQDMLMGVVSSNAGLMTDGKGLLGDGAATPYDSSSPLRDNM 1515
Query: 120 -------DFGMTPGRSPISGTPY---------HEGMMSPSYMLSPNLRLSPTNDAQFSP- 248
D +P R S TP G SP SP SPT+ SP
Sbjct: 1516 YIGSPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPTSPFNTSPT 1575
Query: 249 ---YVGGMAFSPT------------SSPGYSPSSPGYSPSSPGYSPTSPGY--SPTSP 371
Y +SPT SSPG+SP+SP ++P+SP YSPTSPGY SPTSP
Sbjct: 1576 SPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPAFAPTSPAYSPTSPGYQQSPTSP 1633
Score = 70.9 bits (172), Expect = 4e-11
Identities = 44/88 (50%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYMLSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSP 287
+P SP SG +P GM SP +M SP +PT+ A +SP G SPTS P
Sbjct: 1576 SPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPAFAPTSPA-YSPTSPGYQQSPTS-P 1633
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1634 SYSPTSPGFSPTSPSYSPTSPSFSPASP 1661
Score = 68.6 bits (166), Expect = 2e-10
Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
F +PG SP S SP+Y SP + SPT+ + +SP G FSPTS P YSP
Sbjct: 1599 FMSSPGFSPASPA---FAPTSPAYSPTSPGYQQSPTSPS-YSPTSPG--FSPTS-PSYSP 1651
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP +SP+SP +SPTSP YSPTSP
Sbjct: 1652 TSPSFSPASPAFSPTSPSYSPTSP 1675
Score = 57.8 bits (138), Expect = 4e-07
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSS 305
+P S T SP+ +S LSPT+ +++P G +SPTS YSP+S
Sbjct: 1657 SPASPAFSPTSPSYSPTSPALGISTGRHLSPTSPTSPKYTPTSPG--WSPTSPETYSPTS 1714
Query: 306 PGYS--------PSSPGYSPTSPGYSPTSP 371
P +S P+SPGYSPTSP ++PTSP
Sbjct: 1715 PNFSGSPTSPGGPTSPGYSPTSPTFNPTSP 1744
[108][TOP]
>UniRef100_C4JY44 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
RepID=C4JY44_UNCRE
Length = 1747
Score = 77.0 bits (188), Expect = 6e-13
Identities = 60/182 (32%), Positives = 77/182 (42%), Gaps = 59/182 (32%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE-----------------------------LQ 95
N++LGQ+AP GTGE +YL+ ML + +Q
Sbjct: 1408 NLILGQMAPAGTGEFDVYLDQTMLMGVVSNNAGLVTMGNVDKGLISDGAATQYDSGSPMQ 1467
Query: 96 LPSYMDGLD-------FGMTPGRSPISGTPYHE---GMMSPSYMLSPNLRLSPTNDAQFS 245
Y+ D G T +P T Y G SP+ SP SPT+ S
Sbjct: 1468 ENMYISSPDPDSQFSPIGQTGSETPAGFTEYQPPGFGGFSPAGARSPGGGYSPTSPFNTS 1527
Query: 246 P----YVGGMAFSPTS------------SPGYSPSSPGYSPSSPGYSPTSPGY----SPT 365
P Y +SPTS SPG+SP+SP ++P+SP YSPTSPGY SPT
Sbjct: 1528 PTSPGYSPSSGYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSPAYSPTSPGYGQAQSPT 1587
Query: 366 SP 371
SP
Sbjct: 1588 SP 1589
Score = 72.4 bits (176), Expect = 1e-11
Identities = 43/89 (48%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISG---TPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVG------GMAFSPTSS 284
+PG SP SG T G+ SP +M SP + + A SP G A SPTS
Sbjct: 1530 SPGYSPSSGYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSPAYSPTSPGYGQAQSPTS- 1588
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1589 PSYSPTSPGFSPTSPSYSPTSPSFSPASP 1617
Score = 55.8 bits (133), Expect = 1e-06
Identities = 44/98 (44%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Frame = +3
Query: 132 TPGRSPIS-GTPYHEGMMSPSYM-LSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSPG 290
+P SP S G + SPSY SP SPT+ + FSP AFSPTS P
Sbjct: 1570 SPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPS-FSP--ASPAFSPTS-PS 1625
Query: 291 YSPSSPGY-----------SPSSPGYSPTSPGYSPTSP 371
YSP+SP SP+SP Y+PTSPG+SPTSP
Sbjct: 1626 YSPTSPALGGVTGRHLSPTSPTSPKYTPTSPGWSPTSP 1663
Score = 53.5 bits (127), Expect = 7e-06
Identities = 42/103 (40%), Positives = 54/103 (52%), Gaps = 23/103 (22%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMA---FSPTS--SPGY 293
+PG SP S + SPS+ SP + + + SP +GG+ SPTS SP Y
Sbjct: 1595 SPGFSPTSPS---YSPTSPSFSPASPAFSPTSPSYSPTSPALGGVTGRHLSPTSPTSPKY 1651
Query: 294 SPSSPGYSPSSP-GYSPTSP----------------GYSPTSP 371
+P+SPG+SP+SP YSPTSP GYSPTSP
Sbjct: 1652 TPTSPGWSPTSPDAYSPTSPNFAGSPTSPGWSLLPPGYSPTSP 1694
[109][TOP]
>UniRef100_A6SI63 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6SI63_BOTFB
Length = 1742
Score = 76.6 bits (187), Expect = 8e-13
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 19/142 (13%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE------LQLPSYMDGLDFGM-TP--GRSPIS 155
N+MLGQLAP+GTGE + L+ +ML+ I L + G + G TP G+SP++
Sbjct: 1450 NVMLGQLAPMGTGEMDVLLDPKMLETVISDNSRMGLMAGIPVKGSEGGAATPYDGQSPLN 1509
Query: 156 -----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGM----AFSPTSSPGYSPSSP 308
GTP + SP + +P+ A +GGM A S + GYSP+SP
Sbjct: 1510 EGGYLGTPDYGAQFSPIQSAGSD---TPSGFATEYSGLGGMSPYAAGSRSPGGGYSPTSP 1566
Query: 309 -GYSPSSPGYSPTSPGYSPTSP 371
SPSSP +SP+SPGYSPTSP
Sbjct: 1567 FNASPSSPNFSPSSPGYSPTSP 1588
Score = 65.9 bits (159), Expect = 1e-09
Identities = 47/103 (45%), Positives = 54/103 (52%), Gaps = 23/103 (22%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS---------- 281
+PG SP S P G SP Y +SP R SP + A F+P A+SPTS
Sbjct: 1580 SPGYSPTS--PMMGGGASPGYAVSP--RFSPVSPA-FTPT--SPAYSPTSPSFVSPTSPS 1632
Query: 282 ----SPGYSPSSPG---------YSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1633 YSPTSPNYSPTSPNIHGSPTSPSYSPTSPSYSPTSPNYSPTSP 1675
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/102 (43%), Positives = 51/102 (50%), Gaps = 22/102 (21%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSP-YVG-----GMAFSPTS--- 281
+P SP S H SPSY SP+ + N + SP Y G G SPTS
Sbjct: 1637 SPNYSPTSPN-IHGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGSGLSPTSPVY 1695
Query: 282 ---SPGYSPSSPG---------YSPSSPGYSPTSPGYSPTSP 371
SP +SPSSP YSP+SP YSPTSP +SPTSP
Sbjct: 1696 SPTSPNWSPSSPQHQGNSTSPKYSPTSPSYSPTSPNFSPTSP 1737
[110][TOP]
>UniRef100_Q30BD9 DNA-directed RNA polymerase n=1 Tax=Glaucocystis nostochinearum
RepID=Q30BD9_9EUKA
Length = 1852
Score = 76.3 bits (186), Expect = 1e-12
Identities = 59/151 (39%), Positives = 70/151 (46%), Gaps = 28/151 (18%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSY------------------MDGLDFG 128
NIMLGQL +GTG L+LND+ + M D
Sbjct: 1440 NIMLGQLCQLGTGSFDLFLNDKAFSTPLNRSTGGVDGQPNLVGEGSPTIGSPQMTPYDTH 1499
Query: 129 MTPG--RSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
MTP +SP GTP+ +G Y SP + D FSP+ G +SP SSP YSP
Sbjct: 1500 MTPALQQSP-GGTPFLDGATFSPYAESPFV------DGSFSPHRG---YSP-SSPPYSPR 1548
Query: 303 SPG--------YSPSSPGYSPTSPGYSPTSP 371
SPG YSP+SP YS SP YSPTSP
Sbjct: 1549 SPGFDYAASPSYSPASPSYSAASPRYSPTSP 1579
Score = 68.6 bits (166), Expect = 2e-10
Identities = 44/81 (54%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S PSY SP R SPT+ + +SP ++SPTS PGYSP+SP
Sbjct: 1627 SPGYSPTS----------PSYSPTSP--RYSPTSPS-YSPT--SPSYSPTS-PGYSPTSP 1670
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1671 SYSPTSPSYSPTSPSYSPTSP 1691
Score = 65.9 bits (159), Expect = 1e-09
Identities = 38/74 (51%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMA-----FSPTS------SPGYSPSSPGYSPSSP 329
SPSY SP +SP G + +SPTS SP YSP+SP YSP+SP
Sbjct: 1606 SPSY--SPTSPAYSPTSPSYSPTSPGYSPTSPSYSPTSPRYSPTSPSYSPTSPSYSPTSP 1663
Query: 330 GYSPTSPGYSPTSP 371
GYSPTSP YSPTSP
Sbjct: 1664 GYSPTSPSYSPTSP 1677
Score = 63.2 bits (152), Expect = 9e-09
Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1662 SPGYSPTSPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1712
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSPTSP YSPTSP
Sbjct: 1713 SCSPTSPSYSPTSPSYSPTSP 1733
Score = 62.8 bits (151), Expect = 1e-08
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ S + + SP +SP SSP YSPSSP YSPSSP YSP+SP YS
Sbjct: 1725 SPSYSPTSPSYSPSSPSCSPASP-----TYSP-SSPSYSPSSPSYSPSSPSYSPSSPSYS 1778
Query: 360 PTSP 371
P+SP
Sbjct: 1779 PSSP 1782
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + + + SP ++SPTS P YSP+SP YSPSSP SP SP YS
Sbjct: 1697 SPSYSPTSPSYSPTSPSCSPTSP-----SYSPTS-PSYSPTSPSYSPSSPSCSPASPTYS 1750
Query: 360 PTSP 371
P+SP
Sbjct: 1751 PSSP 1754
Score = 55.8 bits (133), Expect = 1e-06
Identities = 33/65 (50%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 183 SPSYM-LSPNLR-LSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 356
SPSY SP+ SPT Y SSP YSPSSP YSPSSP Y+P S Y
Sbjct: 1732 SPSYSPSSPSCSPASPTYSPSSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPQYTPASANY 1791
Query: 357 SPTSP 371
SP SP
Sbjct: 1792 SPPSP 1796
[111][TOP]
>UniRef100_A7AWJ0 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AWJ0_BABBO
Length = 1746
Score = 76.3 bits (186), Expect = 1e-12
Identities = 61/191 (31%), Positives = 87/191 (45%), Gaps = 68/191 (35%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNA---IELQLPSYMDGLDF-------GMTPGR--- 143
N+MLGQL P+GTG + ++DE L++A +++ S + G M+P +
Sbjct: 1445 NVMLGQLCPMGTGSFDIMIDDEKLRDANQNLQIMPDSALSGFTSPESTSPDSMSPAKINS 1504
Query: 144 --SPISGTPYHEGMM--------SPSYMLSP---------------------------NL 212
SP+ +P + +M SPS++ SP L
Sbjct: 1505 MLSPLPFSPSYAALMMSPIVNVSSPSFVTSPAVDTKALGGSFSPTIMSPQSPVSPSYAPL 1564
Query: 213 RLSPTNDAQFSPYVGGMA-----FSPTS-------------SPGYSPSSPGYSPSSPGYS 338
+P + SP +G M+ +SPTS SP YSP+SP YSP+SP YS
Sbjct: 1565 SPNPLSPNPLSPSMGMMSPTSPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTSPVYS 1624
Query: 339 PTSPGYSPTSP 371
PTSP YSPTSP
Sbjct: 1625 PTSPAYSPTSP 1635
Score = 68.9 bits (167), Expect = 2e-10
Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 21/102 (20%)
Frame = +3
Query: 129 MTPGRSPISGTPYHEGMMSPSY-MLSPNLRL-SPTNDAQ------FSPYVGGMAFSPTS- 281
++P +P+S P +SPS M+SP + SPT+ +SP A+SPTS
Sbjct: 1557 VSPSYAPLSPNPLSPNPLSPSMGMMSPTSPVYSPTSPVYGQAGGVYSP--ASPAYSPTSP 1614
Query: 282 ------------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1615 LYSPTSPVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1656
Score = 64.7 bits (156), Expect = 3e-09
Identities = 37/69 (53%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SP+Y SP L +SP A+SPTS SP YSP+SP YSP+SP YSPT
Sbjct: 1606 SPAY--SPTSPLYSPTSPVYSPT--SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1661
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 1662 SPAYSPTSP 1670
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1627 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 1680
Query: 360 PTSP 371
PTSP
Sbjct: 1681 PTSP 1684
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSP 341
SP+Y SP SPT+ A +SP + + PTS SP YSP+SP YSP+SP YSP
Sbjct: 1662 SPAYSPTSP--AYSPTSPA-YSPTSPNLGYLPTSPAYRPTSPAYSPTSPAYSPTSPAYSP 1718
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1719 TSPVYSPTSP 1728
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SPNL PT+ A + P A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1676 SPAYSPTSPNLGYLPTSPA-YRPT--SPAYSPTS-PAYSPTSPAYSPTSPVYSPTSPEYS 1731
Query: 360 PTSP 371
P P
Sbjct: 1732 PEDP 1735
[112][TOP]
>UniRef100_UPI000186D846 predicted protein n=1 Tax=Pediculus humanus corporis
RepID=UPI000186D846
Length = 1885
Score = 75.9 bits (185), Expect = 1e-12
Identities = 45/93 (48%), Positives = 56/93 (60%), Gaps = 11/93 (11%)
Frame = +3
Query: 126 GMTPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPT---NDAQFSPYVGGMA-----FS 272
G++PG SP S G+P G + Y+ SP +SP+ + F+P M +S
Sbjct: 1529 GLSPGYSPWSPQPGSPSSPGPSNSPYVPSPGGGMSPSYSPSSPAFAPTSPSMTPTSSNYS 1588
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
PTS P YSPSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1589 PTS-PSYSPSSPNYSPNSPSYSPTSPSYSPTSP 1620
Score = 69.3 bits (168), Expect = 1e-10
Identities = 41/81 (50%), Positives = 47/81 (58%)
Frame = +3
Query: 129 MTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
MTP S S T SP+Y SPN +SP ++SPTS P YSP+SP
Sbjct: 1580 MTPTSSNYSPTSPSYSPSSPNY--SPNSPSYSPTSPSYSPT--SPSYSPTS-PSYSPTSP 1634
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1635 SYSPTSPSYSPTSPSYSPTSP 1655
Score = 68.2 bits (165), Expect = 3e-10
Identities = 41/90 (45%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Frame = +3
Query: 126 GMTPGRSPISGT--PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------ 281
GM+P SP S P M S SP + +SP ++SPTS
Sbjct: 1561 GMSPSYSPSSPAFAPTSPSMTPTSSNYSPTSPSYSPSSPNYSP--NSPSYSPTSPSYSPT 1618
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1648
Score = 65.5 bits (158), Expect = 2e-09
Identities = 43/86 (50%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS-----SPGY 293
+P SP S + SPSY SP+ S N SP +FSPTS SP Y
Sbjct: 1689 SPSYSPTSPS---YSRTSPSYSPTSPSYSPSSPNYTPASP-----SFSPTSPSLYSSPRY 1740
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP SP YSPTSP YSPTSP
Sbjct: 1741 SPASPSYSPGSPKYSPTSPSYSPTSP 1766
Score = 64.7 bits (156), Expect = 3e-09
Identities = 41/81 (50%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1602 SPNSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1655
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1656 SYSPTSPSYSPTSPSYSPTSP 1676
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1626 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1679
Query: 360 PTSP 371
PTSP
Sbjct: 1680 PTSP 1683
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1633 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1686
Query: 360 PTSP 371
PTSP
Sbjct: 1687 PTSP 1690
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1640 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1693
Query: 360 PTSP 371
PTSP
Sbjct: 1694 PTSP 1697
Score = 60.8 bits (146), Expect = 4e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1647 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1700
Query: 360 PTSP 371
TSP
Sbjct: 1701 RTSP 1704
Score = 60.8 bits (146), Expect = 4e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YS TSP YS
Sbjct: 1654 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSRTSPSYS 1707
Query: 360 PTSP 371
PTSP
Sbjct: 1708 PTSP 1711
Score = 59.7 bits (143), Expect = 1e-07
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
+P SP S + Y SP+ SP+ + SP ++SPTS SP Y
Sbjct: 1724 SPSFSPTSPSLYSSPRYSPA---SPSYSPGSPKYSPTSP-----SYSPTSPSYASVSPQY 1775
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
+P+SP YSP+SP YSPTSP YSP+SP
Sbjct: 1776 TPTSPQYSPTSPTYSPTSPSYSPSSP 1801
Score = 59.3 bits (142), Expect = 1e-07
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YS +SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSRTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
P+SP
Sbjct: 1715 PSSP 1718
Score = 57.8 bits (138), Expect = 4e-07
Identities = 32/63 (50%), Positives = 44/63 (69%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPS+ + R SPT+ ++SP +++SP +SP YSPSS YSP+SP Y+PTSP YS
Sbjct: 1800 SPSHTPGASTRYSPTSP-KYSPT--SLSYSP-ASPQYSPSSSKYSPTSPTYTPTSPDYSA 1855
Query: 363 TSP 371
+SP
Sbjct: 1856 SSP 1858
Score = 57.0 bits (136), Expect = 6e-07
Identities = 42/88 (47%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSP-NLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+P +P + T Y SP Y SP +L SP + Q+SP +SPTS SP
Sbjct: 1800 SPSHTPGASTRYSP--TSPKY--SPTSLSYSPASP-QYSP--SSSKYSPTSPTYTPTSPD 1852
Query: 291 YSPSSPGYSPSSP-GYSPTSPGYSPTSP 371
YS SSP YSP+ P YSPTSP YSPTSP
Sbjct: 1853 YSASSPTYSPTGPPSYSPTSPTYSPTSP 1880
Score = 56.2 bits (134), Expect = 1e-06
Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 27/150 (18%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFG--MTPGRSPISGTPYHEG 176
NI++GQL +GT +C + M +I + S + G+ FG +TP SP TP+++G
Sbjct: 1441 NIIMGQLPRMGTDKCKAGIEIPM---SIGHGMMSSV-GMMFGNAVTPSMSP-QMTPWNQG 1495
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSP------------ 320
+P+Y+ + SP + +P GG +FSP+ S S SPGYSP
Sbjct: 1496 E-TPAYVSA----WSPHAGSGMTP--GGPSFSPSGSSDASGLSPGYSPWSPQPGSPSSPG 1548
Query: 321 -------------SSPGYSPTSPGYSPTSP 371
SP YSP+SP ++PTSP
Sbjct: 1549 PSNSPYVPSPGGGMSPSYSPSSPAFAPTSP 1578
Score = 55.5 bits (132), Expect = 2e-06
Identities = 40/88 (45%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+PG S T SPSY S + + +PT+ Q+SP +SPTS P YSPSSP
Sbjct: 1748 SPGSPKYSPTSPSYSPTSPSYA-SVSPQYTPTSP-QYSPT--SPTYSPTS-PSYSPSSPS 1802
Query: 312 --------YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTS YSP SP
Sbjct: 1803 HTPGASTRYSPTSPKYSPTSLSYSPASP 1830
[113][TOP]
>UniRef100_Q1E2G9 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
RepID=Q1E2G9_COCIM
Length = 1750
Score = 75.1 bits (183), Expect = 2e-12
Identities = 56/144 (38%), Positives = 71/144 (49%), Gaps = 21/144 (14%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSY-MDGLDFGMTPGRSPI---SGTPYH 170
N++LGQ+AP GTGE +YL+ ML + M +D G+ + SG+P
Sbjct: 1457 NLILGQMAPAGTGEFDVYLDQNMLMGVVSNNAGLVTMGNVDKGLISDGAATQYDSGSPMQ 1516
Query: 171 EGMM----SPSYMLSPNLRLSPTNDAQFSPY----VGGMA---------FSPTSSPGYSP 299
E M P SP + A F+ Y GG + +SPTS SP
Sbjct: 1517 ENMYISSPDPDSQFSPIGQTGSETPAGFTEYQPPGFGGFSPAGARSPGGYSPTSPFNTSP 1576
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SPGYSPSS GYSPTSPG S TSP
Sbjct: 1577 TSPGYSPSS-GYSPTSPGMSITSP 1599
Score = 73.9 bits (180), Expect = 5e-12
Identities = 46/89 (51%), Positives = 54/89 (60%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYMLSPNLR-----LSPTNDAQFSPYVG-GMAFSPTSS 284
+PG SP SG +P GM SP YM SP +PT+ A G G A SPTS
Sbjct: 1578 SPGYSPSSGYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTS- 1636
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1637 PSYSPTSPGFSPTSPSYSPTSPSFSPASP 1665
Score = 55.8 bits (133), Expect = 1e-06
Identities = 44/98 (44%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Frame = +3
Query: 132 TPGRSPIS-GTPYHEGMMSPSYM-LSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSPG 290
+P SP S G + SPSY SP SPT+ + FSP AFSPTS P
Sbjct: 1618 SPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPS-FSP--ASPAFSPTS-PS 1673
Query: 291 YSPSSPGY-----------SPSSPGYSPTSPGYSPTSP 371
YSP+SP SP+SP Y+PTSPG+SPTSP
Sbjct: 1674 YSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSP 1711
Score = 53.9 bits (128), Expect = 5e-06
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYM-LSPNL------RLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSSPGYS------ 317
SPSY SP L LSPT+ +++P G +SPTS YSP+SP ++
Sbjct: 1671 SPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPG--WSPTSPEAYSPTSPNFAGSPTSP 1728
Query: 318 --PSSPGYSPTSPGYSPTSP 371
P+SPGYSPTSP ++PTSP
Sbjct: 1729 GGPTSPGYSPTSPTFNPTSP 1748
[114][TOP]
>UniRef100_C5PAJ4 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
SOWgp RepID=C5PAJ4_COCP7
Length = 1746
Score = 75.1 bits (183), Expect = 2e-12
Identities = 56/144 (38%), Positives = 71/144 (49%), Gaps = 21/144 (14%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSY-MDGLDFGMTPGRSPI---SGTPYH 170
N++LGQ+AP GTGE +YL+ ML + M +D G+ + SG+P
Sbjct: 1457 NLILGQMAPAGTGEFDVYLDQNMLMGVVSNNAGLVTMGNVDKGLISDGAATQYDSGSPMQ 1516
Query: 171 EGMM----SPSYMLSPNLRLSPTNDAQFSPY----VGGMA---------FSPTSSPGYSP 299
E M P SP + A F+ Y GG + +SPTS SP
Sbjct: 1517 ENMYISSPDPDSQFSPIGQTGSETPAGFTEYQPPGFGGFSPAGARSPGGYSPTSPFNTSP 1576
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SPGYSPSS GYSPTSPG S TSP
Sbjct: 1577 TSPGYSPSS-GYSPTSPGMSITSP 1599
Score = 73.9 bits (180), Expect = 5e-12
Identities = 46/89 (51%), Positives = 54/89 (60%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYMLSPNLR-----LSPTNDAQFSPYVG-GMAFSPTSS 284
+PG SP SG +P GM SP YM SP +PT+ A G G A SPTS
Sbjct: 1578 SPGYSPSSGYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTS- 1636
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1637 PSYSPTSPGFSPTSPSYSPTSPSFSPASP 1665
Score = 54.3 bits (129), Expect = 4e-06
Identities = 38/74 (51%), Positives = 46/74 (62%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYM-LSPNL------RLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSSPGY--SPSSP 329
SPSY SP L LSPT+ +++P G +SPTS YSP+SP + SP+SP
Sbjct: 1671 SPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPG--WSPTSPEAYSPTSPNFAGSPTSP 1728
Query: 330 GYSPTSPGYSPTSP 371
G PTSPGYSPTSP
Sbjct: 1729 G-GPTSPGYSPTSP 1741
[115][TOP]
>UniRef100_P11414 DNA-directed RNA polymerase II subunit RPB1 (Fragment) n=1
Tax=Cricetulus griseus RepID=RPB1_CRIGR
Length = 467
Score = 75.1 bits (183), Expect = 2e-12
Identities = 42/86 (48%), Positives = 51/86 (59%)
Frame = +3
Query: 114 GLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGY 293
G G +P SP G+P G SP Y+ SP +SP+ +SP A+ P S GY
Sbjct: 53 GFSPGYSPAWSPTPGSPGSPGPSSP-YIPSPGGAMSPS----YSPT--SPAYEPRSPGGY 105
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
+P SP YSP+SP YSPTSP YSPTSP
Sbjct: 106 TPQSPSYSPTSPSYSPTSPSYSPTSP 131
Score = 70.9 bits (172), Expect = 4e-11
Identities = 46/92 (50%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P+Y G TP S T SPSY SPN SPT+ + +SP ++SP
Sbjct: 95 PAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSP 149
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 150 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 180
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN + N SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 235 SPSYSPTSPNYSPTSPNYTPTSP-----SYSPTS-PSYSPTSPNYTPTSPNYSPTSPSYS 288
Query: 360 PTSP 371
PTSP
Sbjct: 289 PTSP 292
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 151 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 204
Query: 360 PTSP 371
PTSP
Sbjct: 205 PTSP 208
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 158 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 211
Query: 360 PTSP 371
PTSP
Sbjct: 212 PTSP 215
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 165 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 218
Query: 360 PTSP 371
PTSP
Sbjct: 219 PTSP 222
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 172 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 225
Query: 360 PTSP 371
PTSP
Sbjct: 226 PTSP 229
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 179 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 232
Query: 360 PTSP 371
PTSP
Sbjct: 233 PTSP 236
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 186 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 239
Query: 360 PTSP 371
PTSP
Sbjct: 240 PTSP 243
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 193 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPNYS 246
Query: 360 PTSP 371
PTSP
Sbjct: 247 PTSP 250
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP Y+
Sbjct: 200 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPNYT 253
Query: 360 PTSP 371
PTSP
Sbjct: 254 PTSP 257
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 207 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPNYSPTSPNYTPTSPSYS 260
Query: 360 PTSP 371
PTSP
Sbjct: 261 PTSP 264
Score = 63.2 bits (152), Expect = 9e-09
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP Y+P+SP YSPTSP YS
Sbjct: 214 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYS 267
Query: 360 PTSP 371
PTSP
Sbjct: 268 PTSP 271
Score = 62.8 bits (151), Expect = 1e-08
Identities = 53/146 (36%), Positives = 70/146 (47%), Gaps = 33/146 (22%)
Frame = +3
Query: 33 GTGECALYLNDEMLKNAIELQLPSYMDGLDF----GMTPGRSPISGTPYHEGM-----MS 185
GTG L L+ E K +E+ P+ + GL GMTPG + S + + S
Sbjct: 2 GTGCFDLLLDAEKCKYGMEI--PTNIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYS 59
Query: 186 PSYMLSPNLRLSPTNDAQFSPYVGGM---AFSPTS--------------SPGYSPSSP-- 308
P++ +P SP + + P GG ++SPTS SP YSP+SP
Sbjct: 60 PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY 119
Query: 309 -----GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 120 SPTSPSYSPTSPNYSPTSPSYSPTSP 145
Score = 61.6 bits (148), Expect = 3e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + N + SP ++PTS P YSP+SP YSP+SP Y+PTSP YS
Sbjct: 228 SPSYSPTSPSYSPTSPNYSPTSPN-----YTPTS-PSYSPTSPSYSPTSPNYTPTSPNYS 281
Query: 360 PTSP 371
PTSP
Sbjct: 282 PTSP 285
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT---SSPGYSPS 302
TP S T SPSY SP + +++P SPT SSP YSPS
Sbjct: 274 TPTSPNYSPTSPSYSPTSPSY--SPTSPSYSPSSPRYTPQ------SPTYTPSSPSYSPS 325
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP Y+PTSP YSP+SP
Sbjct: 326 SPSYSPTSPKYTPTSPSYSPSSP 348
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/74 (48%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYMLS-----PNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP 329
SPSY S P + +SP ++SPTS SP YSPSSP Y+P+SP
Sbjct: 298 SPSYSPSSPRYTPQSPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 355
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 356 KYSPTSPKYSPTSP 369
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 351 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 406
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 407 SPTSPTYSPTSPKYSPTSPTYSPTSP 432
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 319 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 373
Query: 363 TSP 371
TSP
Sbjct: 374 TSP 376
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 382 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 432
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 433 KGSTYSPTSPGYSPTSPTYSLTSP 456
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 375 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 429
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 430 TSPKGSTYSPTSPGYSPTSP 449
[116][TOP]
>UniRef100_B3RM26 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens
RepID=B3RM26_TRIAD
Length = 1784
Score = 74.7 bits (182), Expect = 3e-12
Identities = 66/197 (33%), Positives = 78/197 (39%), Gaps = 74/197 (37%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE------------------------------- 89
NIMLGQL+ IGTG L L+ E K+ +E
Sbjct: 1436 NIMLGQLSKIGTGCFDLLLDPEKCKDGMEIPANVPVAGMINGVGAGVFYGDGAGMSPQMT 1495
Query: 90 -----LQLPSY----MDGLDFGMTPGRSPISGTPYHEGMMSP---SYMLSPNLRLSPTND 233
L PSY G+ GMTPG + S + E SP S SP SP +
Sbjct: 1496 PWDSSLTTPSYEGPYTPGMGGGMTPGAAGFSPSGASEPSFSPASYSPNWSPGPAASPGSP 1555
Query: 234 AQFSPYVGGMA-------------------------FSPTS------SPGYSPSSPGYSP 320
SPY+ +SPTS SP YSP+SP YSP
Sbjct: 1556 GPSSPYMQSPTDITFYVAFQSIILTVESKLLTDFSKYSPTSPSYSPTSPRYSPTSPSYSP 1615
Query: 321 SSPGYSPTSPGYSPTSP 371
+SP YSPTSP YSPTSP
Sbjct: 1616 TSPRYSPTSPSYSPTSP 1632
Score = 64.7 bits (156), Expect = 3e-09
Identities = 45/86 (52%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +3
Query: 120 DFGMTPGRSP-ISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGY 293
DF SP S T SPSY SP R SPT+ + +SP +SPTS P Y
Sbjct: 1588 DFSKYSPTSPSYSPTSPRYSPTSPSYSPTSP--RYSPTSPS-YSPT--SPRYSPTS-PSY 1641
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1642 SPTSPSYSPTSPRYSPTSPSYSPTSP 1667
Score = 64.7 bits (156), Expect = 3e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + SPT+ ++SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1666 SPSYSPTSP--KYSPTSP-RYSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1719
Query: 360 PTSP 371
PTSP
Sbjct: 1720 PTSP 1723
Score = 64.3 bits (155), Expect = 4e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP R SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1624 SPSYSPTSP--RYSPTSPS-YSPT--SPSYSPTS-PRYSPTSPSYSPTSPSYSPTSPKYS 1677
Query: 360 PTSP 371
PTSP
Sbjct: 1678 PTSP 1681
Score = 64.3 bits (155), Expect = 4e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP R SPT+ + +SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1715 SPSYSPTSP--RYSPTSPS-YSPT--SPRYSPTS-PSYSPTSPRYSPTSPSYSPTSPSYS 1768
Query: 360 PTSP 371
PTSP
Sbjct: 1769 PTSP 1772
Score = 63.5 bits (153), Expect = 7e-09
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1659 SPSYSPTSPSY--SPTSP-KYSPT--SPRYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1712
Query: 360 PTSP 371
PTSP
Sbjct: 1713 PTSP 1716
Score = 63.5 bits (153), Expect = 7e-09
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP R SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1673 SPKYSPTSP--RYSPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPRYS 1726
Query: 360 PTSP 371
PTSP
Sbjct: 1727 PTSP 1730
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1687 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPRYSPTSPSYSPTSPRYS 1740
Query: 360 PTSP 371
PTSP
Sbjct: 1741 PTSP 1744
Score = 58.5 bits (140), Expect = 2e-07
Identities = 36/61 (59%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP R SPT+ + +SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1729 SPSYSPTSP--RYSPTSPS-YSPT--SPRYSPTS-PSYSPTSPSYSPTSPSYSPTSPDYS 1782
Query: 360 P 362
P
Sbjct: 1783 P 1783
[117][TOP]
>UniRef100_UPI0000D5670C PREDICTED: similar to GA13798-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D5670C
Length = 2007
Score = 74.3 bits (181), Expect = 4e-12
Identities = 60/179 (33%), Positives = 78/179 (43%), Gaps = 56/179 (31%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGM------TPGRSPISG-T 161
NI++GQL +GTG L L+ E K I + D + GM TP SP + T
Sbjct: 1454 NIIMGQLPRMGTGCFDLLLDAEKCKMGIPIPQAHGADIMASGMFFGSAATPSMSPGAAMT 1513
Query: 162 PYHEGM-----------------------------------MSPSY-MLSPNLRLSPTND 233
P+++G MSP Y SP + +
Sbjct: 1514 PWNQGATPYVGSAWSPHNLMGSGMTPGGPAFSPSAASDASGMSPGYGAWSPTPQSPAMSP 1573
Query: 234 AQFSPYVGGMAFSPTS-------------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+ ++SP+S SPGYSP+SPGYSP+SP YSPTSP YSPTSP
Sbjct: 1574 FMASPHGQSPSYSPSSPSFQPTSPSMTPVSPGYSPTSPGYSPTSPNYSPTSPSYSPTSP 1632
Score = 67.0 bits (162), Expect = 6e-10
Identities = 44/86 (51%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
Frame = +3
Query: 129 MTPGRSPISG----TPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGY 293
++PG SP S T + SPSY SP+ SPT+ + +SP ++SPTS P Y
Sbjct: 1602 VSPGYSPTSPGYSPTSPNYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSY 1655
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1656 SPTSPSYSPTSPSYSPTSPSYSPTSP 1681
Score = 65.9 bits (159), Expect = 1e-09
Identities = 46/94 (48%), Positives = 54/94 (57%), Gaps = 12/94 (12%)
Frame = +3
Query: 126 GMTPGRSPISG---------TPYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAF 269
G +P SP S TP G SP Y SPN SPT+ + +SP ++
Sbjct: 1580 GQSPSYSPSSPSFQPTSPSMTPVSPGYSPTSPGYSPTSPNY--SPTSPS-YSPT--SPSY 1634
Query: 270 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPTS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1635 SPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667
Score = 65.5 bits (158), Expect = 2e-09
Identities = 45/91 (49%), Positives = 54/91 (59%), Gaps = 11/91 (12%)
Frame = +3
Query: 132 TPGRSPISG----TPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS----- 281
+PG SP S T SPSY SP+ SPT+ + +SP ++SPTS
Sbjct: 1610 SPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPSYSP 1664
Query: 282 -SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1665 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1695
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1645 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 360 PTSP 371
PTSP
Sbjct: 1699 PTSP 1702
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1652 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1705
Query: 360 PTSP 371
PTSP
Sbjct: 1706 PTSP 1709
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1659 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1712
Query: 360 PTSP 371
PTSP
Sbjct: 1713 PTSP 1716
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1666 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1719
Query: 360 PTSP 371
PTSP
Sbjct: 1720 PTSP 1723
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1673 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1726
Query: 360 PTSP 371
PTSP
Sbjct: 1727 PTSP 1730
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1680 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1733
Query: 360 PTSP 371
PTSP
Sbjct: 1734 PTSP 1737
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1687 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1740
Query: 360 PTSP 371
P+SP
Sbjct: 1741 PSSP 1744
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPSSP Y+P SP YS
Sbjct: 1701 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPSSPRYTPASPSYS 1754
Query: 360 PTSP 371
PTSP
Sbjct: 1755 PTSP 1758
Score = 61.6 bits (148), Expect = 3e-08
Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPT 344
SPSY SP + +++P ++SPTS SP YSP+SP +SPSSP YSPT
Sbjct: 1729 SPSY--SPTSPSYSPSSPRYTP--ASPSYSPTSPSYSPSSPQYSPASPSFSPSSPKYSPT 1784
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 1785 SPSYSPTSP 1793
Score = 60.1 bits (144), Expect = 7e-08
Identities = 43/93 (46%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Frame = +3
Query: 132 TPGRSPISG--TPYHEGMMSPSYMLSPNLR-----LSPTNDAQFSPYVGGMAFSPTS--- 281
+P SP S TP SPS SPN SPT+ Q+SP+ +SPTS
Sbjct: 1813 SPNYSPSSPQHTPAASSRYSPS---SPNYSPSSPSYSPTSP-QYSPH--STKYSPTSPTY 1866
Query: 282 ---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YS P YSP+SP YSPTSP
Sbjct: 1867 TPTSPSYSPASPAYSSQPPRYSPSSPSYSPTSP 1899
Score = 59.7 bits (143), Expect = 1e-07
Identities = 37/70 (52%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPG-------YSP 341
SPSY SP + Q+SP +FSP SSP YSP+SP YSP+SP YSP
Sbjct: 1750 SPSY--SPTSPSYSPSSPQYSP--ASPSFSP-SSPKYSPTSPSYSPTSPSFAGGSPQYSP 1804
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1805 TSPSYSPTSP 1814
Score = 59.3 bits (142), Expect = 1e-07
Identities = 43/86 (50%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGY 293
+P SP S G+P + SPSY SPN SP++ Q +P +SP SSP Y
Sbjct: 1785 SPSYSPTSPSFAGGSPQYSPT-SPSYSPTSPNY--SPSSP-QHTP-AASSRYSP-SSPNY 1838
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPSSP YSP+SP YSP S YSPTSP
Sbjct: 1839 SPSSPSYSPTSPQYSPHSTKYSPTSP 1864
[118][TOP]
>UniRef100_B7PJA3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis
RepID=B7PJA3_IXOSC
Length = 1937
Score = 74.3 bits (181), Expect = 4e-12
Identities = 63/184 (34%), Positives = 79/184 (42%), Gaps = 61/184 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQL---------------------------- 98
NI++GQLA +GTG L L+ E K IE+ +
Sbjct: 1457 NIIMGQLARMGTGCFDLMLDAEKCKYGIEIPMNLPGMMGPLGPGVFFGSAATPLAGMSPQ 1516
Query: 99 ---------PSY----MDGLDFGMTPGRSPISGTPYHE--GMMSPSYMLSPNLRLSPTND 233
PSY GL GMTPG + S + + G S LSP P +
Sbjct: 1517 MTPWGQGATPSYGSGWSPGLGSGMTPGAAGFSPSAASDASGYSPASAGLSPGWSPQPGSP 1576
Query: 234 AQ--FSPYV----------GGMAFSPTS------SPGYSPSSPGYSPSSPGYSPTSPGYS 359
A SPY+ A++P+S SP YSP+SP YSP+SP YSPTSP YS
Sbjct: 1577 ASSPASPYIPSPVSPNYSPSSPAYAPSSPSMTPASPTYSPTSPSYSPTSPSYSPTSPNYS 1636
Query: 360 PTSP 371
PTSP
Sbjct: 1637 PTSP 1640
Score = 70.1 bits (170), Expect = 7e-11
Identities = 44/82 (53%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +3
Query: 129 MTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
MTP S T SPSY SPN SPT+ + +SP ++SPTS P YSP+S
Sbjct: 1607 MTPASPTYSPTSPSYSPTSPSYSPTSPNY--SPTSPS-YSPT--SPSYSPTS-PSYSPTS 1660
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 1661 PSYSPTSPSYSPTSPSYSPTSP 1682
Score = 69.3 bits (168), Expect = 1e-10
Identities = 44/98 (44%), Positives = 54/98 (55%), Gaps = 16/98 (16%)
Frame = +3
Query: 126 GMTPGRSPISGTP-------YHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSP 275
G++PG SP G+P Y +SP+Y SP S + SP ++SP
Sbjct: 1564 GLSPGWSPQPGSPASSPASPYIPSPVSPNYSPSSPAYAPSSPSMTPASPTYSPTSPSYSP 1623
Query: 276 TS------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1624 TSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSP 1661
Score = 65.9 bits (159), Expect = 1e-09
Identities = 46/93 (49%), Positives = 52/93 (55%)
Frame = +3
Query: 93 QLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFS 272
Q PSY G +P SP S P + SPSY SP Q++P +S
Sbjct: 1771 QSPSYSPG-----SPSYSPSS--PKYSPT-SPSY--SPTSPSYSPGSPQYTP--SSPKYS 1818
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
PTS P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1819 PTS-PTYSPTSPSYSPSSPKYSPTSPKYSPTSP 1850
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1653 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1706
Query: 360 PTSP 371
PTSP
Sbjct: 1707 PTSP 1710
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1660 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1713
Query: 360 PTSP 371
PTSP
Sbjct: 1714 PTSP 1717
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPSSP Y+P+SP YSPTSP YS
Sbjct: 1688 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPSSPNYTPASPSYSPTSPSYS 1741
Query: 360 PTSP 371
PTSP
Sbjct: 1742 PTSP 1745
Score = 64.3 bits (155), Expect = 4e-09
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ S N SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1709 SPSYSPTSPSYSPSSPNYTPASP-----SYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1762
Query: 360 PTSP 371
P+SP
Sbjct: 1763 PSSP 1766
Score = 63.9 bits (154), Expect = 5e-09
Identities = 42/81 (51%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP S T SPSY SP+ SPT+ + +SP +SP SP YSP SP
Sbjct: 1727 TPASPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSP--SSPNYSP-QSPSYSPGSP 1780
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSPTSP YSPTSP
Sbjct: 1781 SYSPSSPKYSPTSPSYSPTSP 1801
Score = 63.9 bits (154), Expect = 5e-09
Identities = 46/94 (48%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT 278
PSY G TP S T SPSY S + + SPT+ ++SP SPT
Sbjct: 1801 PSYSPGSP-QYTPSSPKYSPTSPTYSPTSPSYSPS-SPKYSPTSP-KYSPT------SPT 1851
Query: 279 ---SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SSP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1852 YTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSP 1885
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SP SSP Y+P+SP YSP+SP YSPTSP YS
Sbjct: 1695 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSP-SSPNYTPASPSYSPTSPSYSPTSPSYS 1748
Query: 360 PTSP 371
PTSP
Sbjct: 1749 PTSP 1752
Score = 62.4 bits (150), Expect = 2e-08
Identities = 40/80 (50%), Positives = 49/80 (61%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P S T SP+Y S + + SPT+ Q+SP +SPTS P YSP+SP
Sbjct: 1832 SPSSPKYSPTSPKYSPTSPTYTPS-SPKYSPTSP-QYSPT--SPQYSPTS-PKYSPTSPK 1886
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1887 YSPTSPTYSPTSPKYSPTSP 1906
Score = 60.1 bits (144), Expect = 7e-08
Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYV--GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 353
SPSY SP+ S N + SP G ++SP SSP YSP+SP YSP+SP YSP SP
Sbjct: 1751 SPSYSPTSPSYSPSSPNYSPQSPSYSPGSPSYSP-SSPKYSPTSPSYSPTSPSYSPGSPQ 1809
Query: 354 YSPTSP 371
Y+P+SP
Sbjct: 1810 YTPSSP 1815
Score = 58.5 bits (140), Expect = 2e-07
Identities = 42/90 (46%), Positives = 50/90 (55%), Gaps = 10/90 (11%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
TP S T SP Y SP + SPT+ ++SP +SPTS SP
Sbjct: 1853 TPSSPKYSPTSPQYSPTSPQYSPTSP--KYSPTSP-KYSPT--SPTYSPTSPKYSPTSPT 1907
Query: 291 YSPSSP---GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SPGYSP+SP YSPTSP
Sbjct: 1908 YSPTSPKGSSYSPTSPGYSPSSPTYSPTSP 1937
[119][TOP]
>UniRef100_A8PU11 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PU11_BRUMA
Length = 1943
Score = 74.3 bits (181), Expect = 4e-12
Identities = 65/189 (34%), Positives = 83/189 (43%), Gaps = 66/189 (34%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYM---DGLDFG---------MTPGRS 146
NIMLGQLA GTG L L+ + K A+E+Q + G+ FG M+P ++
Sbjct: 1521 NIMLGQLARAGTGCFDLVLDADKCKLAMEIQTGGGLLGTGGMYFGSSMSPASSAMSPAQT 1580
Query: 147 PISG--TPYHEGMMSP---SYMLSPNLRLSPTNDAQ--FSPYVGGMAFSP---------- 275
P + TP + SP S M SP+ ++ FSPY GG ++SP
Sbjct: 1581 PWNAGTTPAYGAAWSPATGSGMTPGGAGFSPSGHSEGGFSPYGGGGSWSPGSPGGSLGGM 1640
Query: 276 ---------------------TSSPGYSPSSPG----------------YSPSSPGYSPT 344
SSPGYSP+SP YSP+SP YSPT
Sbjct: 1641 SPSGAGAYSPAASDYGSGLEGLSSPGYSPTSPASPYGASSPAYGVMSPRYSPTSPSYSPT 1700
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 1701 SPSYSPTSP 1709
Score = 70.9 bits (172), Expect = 4e-11
Identities = 59/156 (37%), Positives = 74/156 (47%), Gaps = 36/156 (23%)
Frame = +3
Query: 12 LGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPIS-GTPYHE----- 173
LG ++P G G + +D Y GL+ +PG SP S +PY
Sbjct: 1637 LGGMSPSGAGAYSPAASD-------------YGSGLEGLSSPGYSPTSPASPYGASSPAY 1683
Query: 174 GMMSPSYM--------LSPNLR-----LSPTNDA------QFSPYVGGMA-----FSPTS 281
G+MSP Y SP+ SPT+ + +SP G + +SPTS
Sbjct: 1684 GVMSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTS 1743
Query: 282 ------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPGYSPSSP YSPTSP YSPTSP
Sbjct: 1744 PSYSPTSPSYSPASPGYSPSSPRYSPTSPAYSPTSP 1779
Score = 67.4 bits (163), Expect = 5e-10
Identities = 50/102 (49%), Positives = 56/102 (54%), Gaps = 22/102 (21%)
Frame = +3
Query: 132 TPGRSPISG----TPYHEGMMSPSYM-----LSPNL-RLSPTNDAQ------FSPYVGGM 263
+PG SP S T SPSY SP+ R SPT+ A +SP
Sbjct: 1729 SPGYSPTSPSYSPTSPSYSPTSPSYSPASPGYSPSSPRYSPTSPAYSPTSPTYSPT--SP 1786
Query: 264 AFSPTS------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
A+SPTS SP YSP+SPGYSPSSP YSPTSP YSPTSP
Sbjct: 1787 AYSPTSPTYSPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSP 1828
Score = 65.1 bits (157), Expect = 2e-09
Identities = 45/87 (51%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
+PG SP S SP+Y SP SPT+ A +SP +SPTS SPG
Sbjct: 1757 SPGYSPSSP---RYSPTSPAYSPTSPTY--SPTSPA-YSPT--SPTYSPTSPSYSPASPG 1808
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSP+SP YSPTSP YSP+SP
Sbjct: 1809 YSPSSPRYSPTSPTYSPTSPAYSPSSP 1835
Score = 62.0 bits (149), Expect = 2e-08
Identities = 39/63 (61%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SP Y S SP DA SP A+SPTS P YSPSSP YSPSSP YSPTSP YSP
Sbjct: 1848 SPQYTPS-----SPAGDA--SP-----AYSPTS-PQYSPSSPRYSPSSPQYSPTSPQYSP 1894
Query: 363 TSP 371
+SP
Sbjct: 1895 SSP 1897
Score = 61.6 bits (148), Expect = 3e-08
Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT 278
PSY G +P S T SP+Y SP+ + Q+SP ++P+
Sbjct: 1800 PSYSPASP-GYSPSSPRYSPTSPTYSPTSPAY--SPSSPQYSPSSPQYSP--SSPQYTPS 1854
Query: 279 S-----SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
S SP YSP+SP YSPSSP YSP+SP YSPTSP
Sbjct: 1855 SPAGDASPAYSPTSPQYSPSSPRYSPSSPQYSPTSP 1890
Score = 59.7 bits (143), Expect = 1e-07
Identities = 41/81 (50%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S T SP+Y SP SPT+ + +SP G +SP SSP YSP+SP
Sbjct: 1771 SPAYSPTSPT---YSPTSPAYSPTSPTY--SPTSPS-YSPASPG--YSP-SSPRYSPTSP 1821
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSP+SP
Sbjct: 1822 TYSPTSPAYSPSSPQYSPSSP 1842
Score = 59.7 bits (143), Expect = 1e-07
Identities = 37/65 (56%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSP--TSSPGYSPSSPGYSPSSPGYSPTSPGY 356
SP Y S + + SPT+ Q+SP G A + SSP YSPSSP YSPSSP YSP+SP Y
Sbjct: 1875 SPRYSPS-SPQYSPTSP-QYSPSSPGGAGTSYSRSSPQYSPSSPQYSPSSPQYSPSSPQY 1932
Query: 357 SPTSP 371
SP+SP
Sbjct: 1933 SPSSP 1937
[120][TOP]
>UniRef100_UPI0000E48671 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit
(RPB1) isoform 3 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000E48671
Length = 1921
Score = 73.9 bits (180), Expect = 5e-12
Identities = 63/195 (32%), Positives = 80/195 (41%), Gaps = 72/195 (36%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSY-----MDGLDFG------------M 131
NIMLG+LA +GTG L L+ E K+ +E+ + M G+ FG M
Sbjct: 1457 NIMLGKLAGLGTGSFDLLLDAEKCKHGMEIPMGMGAGLVGMPGMLFGAMGSPSQSMSPQM 1516
Query: 132 TP---GRSPISGTPYHEGM------------------------MSPSYMLSPNLRLSPTN 230
TP G +P+ G + M SP++ P SP N
Sbjct: 1517 TPWNQGATPMHGASWSPMMGSGMTPGGPGFSPANSESTGFSPAYSPAWSPQPQSPGSPAN 1576
Query: 231 DAQFSPYVGGMA----------------------FSPTS------SPGYSPSSPGYSPSS 326
G M+ +SPTS SPGYSP+SP YSP+S
Sbjct: 1577 SPYIPSPAGPMSPSYSPASPSYLPASPATPQSPGYSPTSPSYSPTSPGYSPASPSYSPTS 1636
Query: 327 PGYSPTSPGYSPTSP 371
P YSPTSP YSPTSP
Sbjct: 1637 PSYSPTSPSYSPTSP 1651
Score = 66.6 bits (161), Expect = 8e-10
Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISGT--PYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+PG SP S + P G SPSY SP+ SPT+ + +SP ++SPTS P YS
Sbjct: 1608 SPGYSPTSPSYSPTSPGYSPASPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYS 1661
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1662 PTSPSYSPTSPSYSPTSPSYSPTSP 1686
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1622 SPGYSPASPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1672
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1673 SYSPTSPSYSPTSPSYSPTSP 1693
Score = 66.6 bits (161), Expect = 8e-10
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
G +P S T SPSY SP+ SPT+ + +SP ++SPTS P YSP+
Sbjct: 1624 GYSPASPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPT 1677
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1678 SPSYSPTSPSYSPTSPSYSPTSP 1700
Score = 66.2 bits (160), Expect = 1e-09
Identities = 45/94 (47%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 93 QLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAF 269
Q PSY G +P S T SPSY SPN S + SP ++
Sbjct: 1782 QSPSYSPGSP-SYSPSSPKYSPTSPSYSPTSPSYSPTSPNFSPSSPTYSPASP-----SY 1835
Query: 270 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPTS P YSPSSP YSP+SP YSPTSP YSP SP
Sbjct: 1836 SPTS-PKYSPSSPKYSPTSPTYSPTSPKYSPASP 1868
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPSSP YSPTSP YS
Sbjct: 1720 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPSSPKYSPTSPSYS 1773
Query: 360 PTSP 371
PTSP
Sbjct: 1774 PTSP 1777
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1657 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1710
Query: 360 PTSP 371
PTSP
Sbjct: 1711 PTSP 1714
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1664 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1717
Query: 360 PTSP 371
PTSP
Sbjct: 1718 PTSP 1721
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1671 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1724
Query: 360 PTSP 371
PTSP
Sbjct: 1725 PTSP 1728
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1678 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1731
Query: 360 PTSP 371
PTSP
Sbjct: 1732 PTSP 1735
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1685 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1738
Query: 360 PTSP 371
PTSP
Sbjct: 1739 PTSP 1742
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1692 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1745
Query: 360 PTSP 371
PTSP
Sbjct: 1746 PTSP 1749
Score = 62.4 bits (150), Expect = 2e-08
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSPSSP YSP+SP YSPTSP YS
Sbjct: 1727 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPSSPKYSPTSPSYSPTSPSYS 1780
Query: 360 PTSP 371
P SP
Sbjct: 1781 PQSP 1784
Score = 62.4 bits (150), Expect = 2e-08
Identities = 34/63 (53%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP +SP G ++SP SSP YSP+SP YSP+SP YSPTSP +SP
Sbjct: 1769 SPSY--SPTSPSYSPQSPSYSP--GSPSYSP-SSPKYSPTSPSYSPTSPSYSPTSPNFSP 1823
Query: 363 TSP 371
+SP
Sbjct: 1824 SSP 1826
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP +SPTS P YSP+SP YSP SP YSP SP YS
Sbjct: 1741 SPSYSPTSPSY--SPTSPS-YSP--SSPKYSPTS-PSYSPTSPSYSPQSPSYSPGSPSYS 1794
Query: 360 PTSP 371
P+SP
Sbjct: 1795 PSSP 1798
Score = 58.2 bits (139), Expect = 3e-07
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SP SSP YSP+SP YSP+SP YSP SP YS
Sbjct: 1734 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSP-SSPKYSPTSPSYSPTSPSYSPQSPSYS 1787
Query: 360 PTSP 371
P SP
Sbjct: 1788 PGSP 1791
Score = 57.0 bits (136), Expect = 6e-07
Identities = 42/89 (47%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
+P SP S T SPSY SP + ++SP +SPTS SP Y
Sbjct: 1818 SPNFSPSSPT---YSPASPSY--SPTSPKYSPSSPKYSPT--SPTYSPTSPKYSPASPTY 1870
Query: 294 SPSSPGYSPSSPGYSPTSP---GYSPTSP 371
SP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1871 SPTSPKYSPSSPTYSPTSPKGSTYSPTSP 1899
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/89 (42%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
+P S T SP Y SP ++SP +SPTS SP Y
Sbjct: 1829 SPASPSYSPTSPKYSPSSPKY--SPTSPTYSPTSPKYSP--ASPTYSPTSPKYSPSSPTY 1884
Query: 294 SPSSPG---YSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1885 SPTSPKGSTYSPTSPSYSPTSPSYSPTSP 1913
[121][TOP]
>UniRef100_A7S8F9 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
RepID=A7S8F9_NEMVE
Length = 1929
Score = 73.9 bits (180), Expect = 5e-12
Identities = 60/176 (34%), Positives = 80/176 (45%), Gaps = 54/176 (30%)
Frame = +3
Query: 6 IMLGQLAPIGTGECALYLNDEMLKNAIELQL----------------------------- 98
I++G+L IGTG L L+ E K+ +E+
Sbjct: 1453 IIMGKLPRIGTGSFDLMLDAEKCKHGMEIPTNIMGPGMGGAMAAIGVFFGAAGSPSAMSP 1512
Query: 99 ----------PSYMD----GLDFGMTPGRSPISGTPYHE------GMMSPSYMLSPNLRL 218
P+YM+ G+ GMTPG + S + + G SPS+M SP
Sbjct: 1513 QMTPWNMGATPAYMEAWSPGMGSGMTPGAASFSPSAASDASGMSPGGFSPSWM-SPTPG- 1570
Query: 219 SPTNDAQFSPYVGGMA-----FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP + SPY+ A +SP SSP + PSSP SP+SP YSPTSPGYSP+SP
Sbjct: 1571 SPVSPGPTSPYIPSPAAASPGYSP-SSPAFMPSSPSMSPASPSYSPTSPGYSPSSP 1625
Score = 67.0 bits (162), Expect = 6e-10
Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1617 SPGYSPSSPSSGYSPA-SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1669
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSP 1690
Score = 66.6 bits (161), Expect = 8e-10
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
G +P S T SPSY SP+ SPT+ + +SP ++SPTS P YSP+
Sbjct: 1628 GYSPASPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPT 1681
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPTSP 1704
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1661 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1714
Query: 360 PTSP 371
PTSP
Sbjct: 1715 PTSP 1718
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1668 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1721
Query: 360 PTSP 371
PTSP
Sbjct: 1722 PTSP 1725
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1675 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1728
Query: 360 PTSP 371
PTSP
Sbjct: 1729 PTSP 1732
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1682 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1689 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1742
Query: 360 PTSP 371
PTSP
Sbjct: 1743 PTSP 1746
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1696 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1749
Query: 360 PTSP 371
PTSP
Sbjct: 1750 PTSP 1753
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1703 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1756
Query: 360 PTSP 371
PTSP
Sbjct: 1757 PTSP 1760
Score = 63.9 bits (154), Expect = 5e-09
Identities = 42/96 (43%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 93 QLPSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYV--GGM 263
Q PSY +P S T SP+Y SP+ S + SP
Sbjct: 1779 QSPSYASPSSPKYSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKYSPTSPSYTPASP 1838
Query: 264 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
++SP +SP YSPSSP YSPSSP Y+PTSP YSPTSP
Sbjct: 1839 SYSP-ASPSYSPSSPSYSPSSPRYTPTSPQYSPTSP 1873
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1710 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1763
Query: 360 PTSP 371
P+SP
Sbjct: 1764 PSSP 1767
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPSSP YSP+SP YS
Sbjct: 1724 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPSSPSYSPSSPSYS 1777
Query: 360 PTSP 371
P SP
Sbjct: 1778 PQSP 1781
Score = 58.5 bits (140), Expect = 2e-07
Identities = 33/63 (52%), Positives = 38/63 (60%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP + +SP ++SP S SPSSP YSP+SP YSPTSP YSP
Sbjct: 1752 SPSY--SPTSPSYSPSSPSYSP--SSPSYSPQSPSYASPSSPKYSPASPSYSPTSPKYSP 1807
Query: 363 TSP 371
TSP
Sbjct: 1808 TSP 1810
Score = 53.5 bits (127), Expect = 7e-06
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ S + + SP ++PTS P YSP+SP YSP+SP YSPT+P Y+
Sbjct: 1837 SPSYSPASPSYSPSSPSYSPSSP-----RYTPTS-PQYSPTSPKYSPASPNYSPTTPSYT 1890
Query: 360 PTS 368
P S
Sbjct: 1891 PMS 1893
[122][TOP]
>UniRef100_B0XMU6 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
RepID=B0XMU6_ASPFC
Length = 1750
Score = 73.2 bits (178), Expect = 9e-12
Identities = 56/143 (39%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDG----------------LDFGMT 134
N++LGQ+AP GTGE LYL+ +L + + G D G
Sbjct: 1453 NLILGQMAPAGTGEFDLYLDQNLLNTVVSNNARFGVMGTIGAKDAIISDGAATQYDTGSP 1512
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVG-GMAFSP--TSSPGYSPSS 305
S GTP E SP SP ++ P G G FSP TS GYSPSS
Sbjct: 1513 MQESAFIGTPDPESAFSPIRQAGAE---SPGGFTEYQPTGGFGGGFSPAATSPAGYSPSS 1569
Query: 306 P-GYSPSSPGYSPTSPGYSPTSP 371
P +P+SPGYSPTS YSPTSP
Sbjct: 1570 PFSANPTSPGYSPTS-SYSPTSP 1591
Score = 70.5 bits (171), Expect = 6e-11
Identities = 42/92 (45%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Frame = +3
Query: 132 TPGRSPISG---TPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------- 281
+PG SP S T G+ SP +M SP + + A SP A+SPTS
Sbjct: 1577 SPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSP-----AYSPTSPAYGQAS 1631
Query: 282 --SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1632 PTSPSYSPTSPGFSPTSPNYSPTSPSFSPASP 1663
Score = 54.7 bits (130), Expect = 3e-06
Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S SPSY SP + N + SP +FSP +SP +SP+SP
Sbjct: 1617 SPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSP-----SFSP-ASPAFSPTSP 1670
Query: 309 GYSPSSPG-----------------YSPTSPGYSPTSP 371
YSP+SP Y+PTSPG+SPTSP
Sbjct: 1671 SYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP 1708
Score = 53.5 bits (127), Expect = 7e-06
Identities = 42/101 (41%), Positives = 53/101 (52%), Gaps = 21/101 (20%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMA--FSPTS--SPGYS 296
+PG SP S + SPS+ SP + + + SP +GG SPTS SP Y+
Sbjct: 1641 SPGFSPTSP---NYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPTSPTSPKYT 1697
Query: 297 PSSPGYSPSSPG-YSPTSP---------------GYSPTSP 371
P+SPG+SP+SP YSPTSP GYSPTSP
Sbjct: 1698 PTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSP 1738
[123][TOP]
>UniRef100_A7EKT1 DNA-directed RNA polymerase n=2 Tax=Sclerotinia sclerotiorum
RepID=A7EKT1_SCLS1
Length = 1746
Score = 72.8 bits (177), Expect = 1e-11
Identities = 57/148 (38%), Positives = 75/148 (50%), Gaps = 25/148 (16%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE------LQLPSYMDGLDFGM-TP--GRSPIS 155
N+MLGQLAP+GTGE + L+ +ML+ I L + G + G TP G+SP++
Sbjct: 1450 NVMLGQLAPMGTGEMDVLLDPKMLETVISDNSRMGLMAGIPVKGGEGGAATPYDGQSPLN 1509
Query: 156 -----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP----------G 290
GTP + SP S T + Y G + F SP G
Sbjct: 1510 EGGYLGTPDYGAAFSPIQSAG-----SETPSGFATEYGGSLGFGGGMSPYGAGSRSPGGG 1564
Query: 291 YSPSSP-GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP SP+SP +SP+SPGYSPTSP
Sbjct: 1565 YSPTSPFNASPTSPQFSPSSPGYSPTSP 1592
Score = 65.9 bits (159), Expect = 1e-09
Identities = 47/103 (45%), Positives = 54/103 (52%), Gaps = 23/103 (22%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS---------- 281
+PG SP S P G SP Y +SP R SP + A F+P A+SPTS
Sbjct: 1584 SPGYSPTS--PMMGGGASPGYSVSP--RFSPVSPA-FTPT--SPAYSPTSPSFVSPTSPS 1636
Query: 282 ----SPGYSPSSPG---------YSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1637 YSPTSPNYSPTSPNIHGSPTSPSYSPTSPSYSPTSPNYSPTSP 1679
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/102 (43%), Positives = 51/102 (50%), Gaps = 22/102 (21%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSP-YVG-----GMAFSPTS--- 281
+P SP S H SPSY SP+ + N + SP Y G G SPTS
Sbjct: 1641 SPNYSPTSPN-IHGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGSGLSPTSPVY 1699
Query: 282 ---SPGYSPSSPG---------YSPSSPGYSPTSPGYSPTSP 371
SP +SPSSP YSP+SP YSPTSP +SPTSP
Sbjct: 1700 SPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTSPNFSPTSP 1741
[124][TOP]
>UniRef100_A1D1U9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D1U9_NEOFI
Length = 1750
Score = 72.8 bits (177), Expect = 1e-11
Identities = 56/143 (39%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDG----------------LDFGMT 134
N++LGQ+AP GTGE LYL+ +L + + G D G
Sbjct: 1453 NLILGQMAPAGTGEFDLYLDQNLLSTVVSNNARFGVMGTIGAKDAIISDGAATQYDTGSP 1512
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVG-GMAFSP--TSSPGYSPSS 305
S GTP E SP SP ++ P G G FSP TS GYSPSS
Sbjct: 1513 MQESAYIGTPDPESAFSPIRQAGAE---SPGGFTEYQPTGGFGGGFSPAATSPAGYSPSS 1569
Query: 306 P-GYSPSSPGYSPTSPGYSPTSP 371
P +P+SPGYSPTS YSPTSP
Sbjct: 1570 PFSANPTSPGYSPTS-SYSPTSP 1591
Score = 70.5 bits (171), Expect = 6e-11
Identities = 42/92 (45%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Frame = +3
Query: 132 TPGRSPISG---TPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------- 281
+PG SP S T G+ SP +M SP + + A SP A+SPTS
Sbjct: 1577 SPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSP-----AYSPTSPAYGQAS 1631
Query: 282 --SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1632 PTSPSYSPTSPGFSPTSPNYSPTSPSFSPASP 1663
Score = 54.7 bits (130), Expect = 3e-06
Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S SPSY SP + N + SP +FSP +SP +SP+SP
Sbjct: 1617 SPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSP-----SFSP-ASPAFSPTSP 1670
Query: 309 GYSPSSPG-----------------YSPTSPGYSPTSP 371
YSP+SP Y+PTSPG+SPTSP
Sbjct: 1671 SYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP 1708
Score = 53.5 bits (127), Expect = 7e-06
Identities = 42/101 (41%), Positives = 53/101 (52%), Gaps = 21/101 (20%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMA--FSPTS--SPGYS 296
+PG SP S + SPS+ SP + + + SP +GG SPTS SP Y+
Sbjct: 1641 SPGFSPTSP---NYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPTSPTSPKYT 1697
Query: 297 PSSPGYSPSSPG-YSPTSP---------------GYSPTSP 371
P+SPG+SP+SP YSPTSP GYSPTSP
Sbjct: 1698 PTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSP 1738
[125][TOP]
>UniRef100_Q5KGG3 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
RepID=Q5KGG3_CRYNE
Length = 1786
Score = 72.4 bits (176), Expect = 1e-11
Identities = 61/185 (32%), Positives = 82/185 (44%), Gaps = 62/185 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAI-ELQLP---SYMDGLDFGMTPG--------RS 146
N++LGQ+AP+GTG + L+ MLK+ I + +LP G+ GMTPG S
Sbjct: 1440 NVLLGQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMAGGMAGGMTPGGAMTPYDNLS 1499
Query: 147 PISG--------------------------------TPYHEGMMSPSYMLSPNLRLSPTN 230
P+ G +P H GM Y S SPT+
Sbjct: 1500 PMWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAGYSPSSPAGYSPTS 1559
Query: 231 D--------AQFSPYVGGM--AFSP--------TSSPGYSPSSPGYSPSSPGYSPTSPGY 356
+ SP+ G A SP +SP YSP+SP YSP+SP +SPTSP +
Sbjct: 1560 PFAVTSPAYSPTSPFAGAAAGAASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSF 1619
Query: 357 SPTSP 371
SP+SP
Sbjct: 1620 SPSSP 1624
Score = 66.2 bits (160), Expect = 1e-09
Identities = 41/80 (51%), Positives = 48/80 (60%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P SP S P+ SP Y SPT+ QFSP +SP +SP YSP+SP
Sbjct: 1684 SPSYSPTSPAPFQA--TSPRY--------SPTSP-QFSPT--SPTYSP-ASPAYSPTSPQ 1729
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1730 YSPTSPAYSPTSPAYSPTSP 1749
Score = 59.3 bits (142), Expect = 1e-07
Identities = 40/100 (40%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGM--------------AF 269
+P SP S P + SP+ S + SP GG A+
Sbjct: 1595 SPAYSPTS--PQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAY 1652
Query: 270 SPTS------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPTS SP YSP+SP YSP+SP +SPTSP YSPTSP
Sbjct: 1653 SPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSP 1692
Score = 54.3 bits (129), Expect = 4e-06
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPG--------YS 338
SP+Y SP + Q+SP +SPTS P +SP+SP YSP+SP YS
Sbjct: 1649 SPAY--SPTSPMGGITSPQYSPT--SPRYSPTS-PAFSPTSPSYSPTSPAPFQATSPRYS 1703
Query: 339 PTSPGYSPTSP 371
PTSP +SPTSP
Sbjct: 1704 PTSPQFSPTSP 1714
[126][TOP]
>UniRef100_C8VQG7 DNA-directed RNA polymerase (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] n=2 Tax=Emericella
nidulans RepID=C8VQG7_EMENI
Length = 1745
Score = 72.4 bits (176), Expect = 1e-11
Identities = 43/92 (46%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Frame = +3
Query: 132 TPGRSPISG---TPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------- 281
+PG SP S T G+ SP +M SP + + A SP A+SPTS
Sbjct: 1576 SPGYSPTSSYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSP-----AYSPTSPAYGQAS 1630
Query: 282 --SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPG+SP+SP YSPTSP +SPTSP
Sbjct: 1631 PTSPSYSPTSPGFSPTSPNYSPTSPSFSPTSP 1662
Score = 71.6 bits (174), Expect = 2e-11
Identities = 53/142 (37%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDG----------------LDFGMT 134
N++LGQ+AP GTGE +YL+ ML + + G D G
Sbjct: 1453 NLILGQMAPAGTGEFDIYLDQNMLNTVVSNNARYGVMGALGAKDAIISDGAATQYDTGSP 1512
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSP--TSSPGYSPSSP 308
S GTP + SP +P ++ P G FSP TS GYSPSSP
Sbjct: 1513 MQESAYIGTPDPDSNFSPIRQAGAE---TPGGFTEYQPSGGFGGFSPAATSPAGYSPSSP 1569
Query: 309 -GYSPSSPGYSPTSPGYSPTSP 371
+P+SPGYSPTS YSPTSP
Sbjct: 1570 FSANPTSPGYSPTS-SYSPTSP 1590
Score = 56.6 bits (135), Expect = 8e-07
Identities = 39/97 (40%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S SPSY SP + N + SP +FSPTS P +SP+SP
Sbjct: 1616 SPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSP-----SFSPTS-PAFSPTSP 1669
Query: 309 GYSPSSPG----------------YSPTSPGYSPTSP 371
YSP+SP Y+PTSPG+SPTSP
Sbjct: 1670 SYSPTSPAIGGARHLSPTSPTSPKYTPTSPGWSPTSP 1706
Score = 55.1 bits (131), Expect = 2e-06
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 15/78 (19%)
Frame = +3
Query: 183 SPSYM-LSPNL----RLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSSPGYS-------- 317
SPSY SP + LSPT+ +++P G +SPTS YSP+SP ++
Sbjct: 1668 SPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPG--WSPTSPQTYSPTSPNFAGSPTSPGG 1725
Query: 318 PSSPGYSPTSPGYSPTSP 371
P+SPGYSPTSP +SPTSP
Sbjct: 1726 PTSPGYSPTSPAFSPTSP 1743
[127][TOP]
>UniRef100_P16356 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Caenorhabditis
elegans RepID=RPB1_CAEEL
Length = 1852
Score = 72.0 bits (175), Expect = 2e-11
Identities = 63/157 (40%), Positives = 76/157 (48%), Gaps = 34/157 (21%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFG----------MTPGRSPI 152
NIMLGQLA GTG L L+ E K +E+ M G +G +P SP
Sbjct: 1445 NIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNREFSPAHSPW 1504
Query: 153 SG--TPYHEGM--------MSPSYMLSP----NLRLSPTNDAQFSPYVGG---MAFSPTS 281
+ TP + G MSP SP + SP N+ +SP G A SP +
Sbjct: 1505 NSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRT 1564
Query: 282 ------SPG-YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPG YSPSSP +S +SP YSPTSP YSPTSP
Sbjct: 1565 PSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSP 1601
Score = 69.3 bits (168), Expect = 1e-10
Identities = 47/101 (46%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Frame = +3
Query: 81 AIELQLPSYMDGLDFGMTPGRSP-ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVG 257
A+ + PSY G+ G+ SP S T H SPSY SPT SP G
Sbjct: 1559 ALSPRTPSY-GGMSPGVYSPSSPQFSMTSPHYSPTSPSY--------SPT-----SPAAG 1604
Query: 258 GMAFSPT---SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+ +SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1605 QSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/80 (53%), Positives = 47/80 (58%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P SP S T SP+Y SP SPT Y G +SP SSP YSPSSP
Sbjct: 1679 SPTYSPTSPT---YSPTSPTY--SPT---SPTYSPTSPSYESGGGYSP-SSPKYSPSSPT 1729
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1730 YSPTSPSYSPTSPQYSPTSP 1749
Score = 66.2 bits (160), Expect = 1e-09
Identities = 45/89 (50%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------S 284
G +P S T SPSY SP+ SPT+ + +SP ++SPTS S
Sbjct: 1604 GQSPVSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTSPSYSPSS 1658
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSPSSP YSPSSP YSPTSP YSPTSP
Sbjct: 1659 PSYSPSSPSYSPSSPRYSPTSPTYSPTSP 1687
Score = 63.5 bits (153), Expect = 7e-09
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SP SSP YSPSSP YSP+SP YSPTSP YS
Sbjct: 1637 SPSYSPTSPSY--SPTSPS-YSP--SSPSYSP-SSPSYSPSSPRYSPTSPTYSPTSPTYS 1690
Query: 360 PTSP 371
PTSP
Sbjct: 1691 PTSP 1694
Score = 61.2 bits (147), Expect = 3e-08
Identities = 35/63 (55%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP + +SP ++SP SSP YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1644 SPSY--SPTSPSYSPSSPSYSP--SSPSYSP-SSPRYSPTSPTYSPTSPTYSPTSPTYSP 1698
Query: 363 TSP 371
TSP
Sbjct: 1699 TSP 1701
Score = 61.2 bits (147), Expect = 3e-08
Identities = 35/63 (55%), Positives = 41/63 (65%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY SP+ + +SP +SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1651 SPSY--SPSSPSYSPSSPSYSP--SSPRYSPTS-PTYSPTSPTYSPTSPTYSPTSPTYSP 1705
Query: 363 TSP 371
TSP
Sbjct: 1706 TSP 1708
Score = 60.5 bits (145), Expect = 6e-08
Identities = 46/103 (44%), Positives = 57/103 (55%), Gaps = 12/103 (11%)
Frame = +3
Query: 99 PSYMDGLDFG-MTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYV-----G 257
PSY G + +P SP S T SPSY SP + SPT+ Q+SP
Sbjct: 1708 PSYESGGGYSPSSPKYSPSSPT---YSPTSPSYSPTSP--QYSPTSP-QYSPSSPTYTPS 1761
Query: 258 GMAFSPTS-----SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
++PTS SP YSP+SP YSP+SP Y+P+SP YSPTSP
Sbjct: 1762 SPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSP 1804
Score = 59.3 bits (142), Expect = 1e-07
Identities = 36/85 (42%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Frame = +3
Query: 144 SPISGTPYHEGMMSPSYM-----LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPG----YS 296
SP G SP Y SP + Q+SP SP+ PG YS
Sbjct: 1762 SPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYS 1821
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSPSSP YSP SP YSP+SP
Sbjct: 1822 PTSPTYSPSSPTYSPASPSYSPSSP 1846
Score = 57.0 bits (136), Expect = 6e-07
Identities = 31/62 (50%), Positives = 38/62 (61%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SP+Y SP+ + P AQ+SP +SP YSPSSP YSP+SP YSP+SP Y P
Sbjct: 1803 SPTYTPSPSEQ--PGTSAQYSP----------TSPTYSPSSPTYSPASPSYSPSSPTYDP 1850
Query: 363 TS 368
S
Sbjct: 1851 NS 1852
[128][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
RepID=Q4P7Q0_USTMA
Length = 1774
Score = 71.6 bits (174), Expect = 2e-11
Identities = 64/199 (32%), Positives = 82/199 (41%), Gaps = 76/199 (38%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAI---ELQLPSYMDGLDFGMTPGRSPISGTPY-- 167
N++LGQ+AP+GTG L L+ EMLK+ I L + + G++P + TPY
Sbjct: 1441 NVLLGQMAPMGTGAFDLNLDLEMLKDTIVNHALPYDTLLASRSLDAAGGKTPGAMTPYDS 1500
Query: 168 -----------HEGMM------------------------------------------SP 188
HE M SP
Sbjct: 1501 SSPASDDAFRVHEQAMFSPLAQTGGDEGGYNDYLLSGTSPMRTPLGAQSPAGYGFSPVSP 1560
Query: 189 SYM-LSPNLRLSPTND-AQFSPYVGGM-----AFSPTS--------SPGYSPSSPGYSPS 323
Y+ SP SP SP+ G M A+SPTS SP YSP+SP YSP+
Sbjct: 1561 GYVPTSPGYATSPAGALGGMSPWTGNMGATSPAYSPTSPRIFGGATSPSYSPTSPSYSPA 1620
Query: 324 SPGYSPTSP---GYSPTSP 371
SP YSP+SP GYSP+SP
Sbjct: 1621 SPNYSPSSPAGAGYSPSSP 1639
Score = 62.8 bits (151), Expect = 1e-08
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SPN S A +SP + +SP YSP+SP +SP+SP YSP SP Y+
Sbjct: 1614 SPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKFSPTSPNYSPASPAYT 1673
Query: 360 PTSP 371
PTSP
Sbjct: 1674 PTSP 1677
Score = 62.0 bits (149), Expect = 2e-08
Identities = 40/93 (43%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS---------- 281
+P S T + SP+Y + + SPT+ A + GG FSPTS
Sbjct: 1652 SPASPKFSPTSPNYSPASPAYTPTSPV-YSPTSPAM-AGRGGGKGFSPTSPAYSPTSPQY 1709
Query: 282 ---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP +SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1710 SPASPAFSPTSPQYSPASPQYSPTSPQYSPTSP 1742
[129][TOP]
>UniRef100_B4PY98 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
RepID=B4PY98_DROYA
Length = 1889
Score = 71.2 bits (173), Expect = 3e-11
Identities = 44/89 (49%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTSS------ 284
G +P S S T SP Y +PN + SP+ S Y G A+SP+SS
Sbjct: 1632 GYSPSSSGYSPT-------SPVYSPTPNFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNS 1684
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1685 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 1713
Score = 60.8 bits (146), Expect = 4e-08
Identities = 39/93 (41%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTN-----DAQFSPYVGGMAFSPTS--- 281
G +P S TP + SPS+ S + SP N + +SP ++SPTS
Sbjct: 1639 GYSPTSPVYSPTPNFQS--SPSFAGSGSNIYSPGNAYSPSSSNYSP--NSPSYSPTSPSY 1694
Query: 282 ---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSP Y+P +P
Sbjct: 1695 SPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTP 1727
Score = 59.3 bits (142), Expect = 1e-07
Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEG-MMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFS 272
P Y +F +P + Y G SPS SPN +SP ++S
Sbjct: 1645 PVYSPTPNFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSP--SSPSYS 1702
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
PTS P YSP+SP YSP+SP Y+P +P YSPTSP
Sbjct: 1703 PTS-PCYSPTSPSYSPTSPNYTPVTPSYSPTSP 1734
Score = 59.3 bits (142), Expect = 1e-07
Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +3
Query: 129 MTPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
+TP SP S H SP+Y + ++ SPT+ +SP SP SP Y+P
Sbjct: 1725 VTPSYSPTSPNYSASPHYSPASPAYSQT-GVKYSPTSPT-YSPPSPSYDGSP-GSPQYTP 1781
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1782 GSPQYSPASPKYSPTSPLYSPSSP 1805
Score = 57.8 bits (138), Expect = 4e-07
Identities = 41/103 (39%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Frame = +3
Query: 138 GRSPISGTPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSS 305
G SP S +P H G SP +SP SP+ +SP S +SP YSPSS
Sbjct: 1544 GMSP-SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSS 1602
Query: 306 PGYSPSSP---------------------GYSPTSPGYSPTSP 371
P YSP+SP GYSP+S GYSPTSP
Sbjct: 1603 PNYSPTSPLYASASPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1645
Score = 57.0 bits (136), Expect = 6e-07
Identities = 43/102 (42%), Positives = 51/102 (50%), Gaps = 25/102 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP + SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPGP----SMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPT 365
SP GYSPSS GYSPTSP YSPT
Sbjct: 1609 SPLYASASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPT 1650
Score = 55.8 bits (133), Expect = 1e-06
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P T
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGAAMFIGGGSTPSMTPPM-T 1507
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP P + + +P GG +FSP+++ S SP +SP+ PG SP
Sbjct: 1508 PW-VNCNTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 1558
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 1559 SSPGPSMSPYFPASP 1573
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1824 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1875
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1876 AYSPSSP 1882
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1790 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1842
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1843 PTSPTYTPTARNYSPTSPMYSPTAP 1867
[130][TOP]
>UniRef100_Q7Q3C6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7Q3C6_ANOGA
Length = 1878
Score = 70.9 bits (172), Expect = 4e-11
Identities = 57/172 (33%), Positives = 71/172 (41%), Gaps = 49/172 (28%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDF------------------- 125
NI+LGQL +GTG L L+ E K +E+ S + G
Sbjct: 1447 NIILGQLPRMGTGCFDLLLDAEKCKLGMEIPHTSILGGTGMFFGSAATPSMTPWQQSATP 1506
Query: 126 ------------GMTPG--------------RSPISGTPYHEGMMSPSYMLSPNLRLSPT 227
GMTPG SP S +P SP +SP SP+
Sbjct: 1507 GYGGWSPSGPASGMTPGGPSFSPSAQSDASGMSPSSWSPIRGSPSSPGPSMSPYPPSSPS 1566
Query: 228 NDAQFSPYVGGMAFSPTS----SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SP ++P S SP YSP+SPGYSP SP YSP S YSP+SP
Sbjct: 1567 MSPSYSP--SSPNYAPNSPGGASPSYSPTSPGYSPPSPQYSPGSSNYSPSSP 1616
Score = 68.2 bits (165), Expect = 3e-10
Identities = 45/85 (52%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPISGTPYH----EGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP+S P H SP Y SP+ SPT+ + +SP FSPTS P YS
Sbjct: 1629 SPSYSPMS--PMHPTSASNFASPGYSPTSPSY--SPTSPS-YSP--SSPVFSPTS-PSYS 1680
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
PSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1681 PSSPSYSPTSPSYSPTSPSYSPTSP 1705
Score = 63.2 bits (152), Expect = 9e-09
Identities = 40/81 (49%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T SPSY SPN + + SP +SPTS P YSP+SP
Sbjct: 1680 SPSSPSYSPTSPSYSPTSPSYSPTSPNFTPVTPSYSPSSPN-----YSPTS-PHYSPASP 1733
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSPTSP YSPTSP
Sbjct: 1734 SYSPSSPKYSPTSPSYSPTSP 1754
Score = 58.5 bits (140), Expect = 2e-07
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Frame = +3
Query: 129 MTPGRSP----ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS----- 281
+TP SP S T H SPSY S + + SPT+ + +SPTS
Sbjct: 1710 VTPSYSPSSPNYSPTSPHYSPASPSYSPS-SPKYSPTSPS----------YSPTSPSYIG 1758
Query: 282 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP Y+P+SP Y +SP YSPTSP YSP+SP
Sbjct: 1759 SPHYTPASPQYGQASPNYSPTSPSYSPSSP 1788
Score = 57.4 bits (137), Expect = 5e-07
Identities = 39/80 (48%), Positives = 48/80 (60%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P SP S + H + S SY +P SP N + +SP +SPTS P Y+ SSP
Sbjct: 1787 SPQHSPGSSSN-HYSIGSSSYSQTP-APYSP-NMSSYSP--SSPKYSPTS-PVYTSSSPT 1840
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSPT GYSP+SP
Sbjct: 1841 YSPSSPAYSPTPQGYSPSSP 1860
[131][TOP]
>UniRef100_C5FCL2 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
RepID=C5FCL2_NANOT
Length = 1748
Score = 70.9 bits (172), Expect = 4e-11
Identities = 54/146 (36%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLP-SYMDGLDFGMTPGRSPI---SGTPYH 170
N++LGQ+AP GTGE +YL+ ML + + G GM + SG+P
Sbjct: 1455 NLILGQMAPAGTGEFDVYLDQSMLMGVVSNNAGLGAVGGEHKGMLSDGAATQYDSGSPMQ 1514
Query: 171 EGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP-----GYSPSSP-- 329
E M S P+ + SP A VG + P S G+SP P GYSPSSP
Sbjct: 1515 ENMYISS--PDPDSQFSPVRQAGSENAVGFADYQPPSYGGFSPHEPRSPGGGYSPSSPFN 1572
Query: 330 ------------GYSPTSPGYSPTSP 371
GYSPTSPG S TSP
Sbjct: 1573 TSPTSPAYSPSSGYSPTSPGMSITSP 1598
Score = 67.4 bits (163), Expect = 5e-10
Identities = 42/89 (47%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVG------GMAFSPTSS 284
+P SP SG +P GM SP ++ SP + + A SP G A SPTS
Sbjct: 1577 SPAYSPSSGYSPTSPGMSITSPRFISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTS- 1635
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1636 PSYSPTSPGFSPTSPSYSPTSPSFSPASP 1664
Score = 55.5 bits (132), Expect = 2e-06
Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 16/79 (20%)
Frame = +3
Query: 183 SPSYM-LSPNL-----RLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSSPGYS------- 317
SPSY SP L LSPT+ +++P G +SPTS YSP+SP +S
Sbjct: 1670 SPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPG--WSPTSPEAYSPTSPNFSGSPTSPG 1727
Query: 318 -PSSPGYSPTSPGYSPTSP 371
P+SPGYSPTSP ++PTSP
Sbjct: 1728 GPTSPGYSPTSPTFNPTSP 1746
[132][TOP]
>UniRef100_C1H3Q4 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb01 RepID=C1H3Q4_PARBA
Length = 1748
Score = 70.9 bits (172), Expect = 4e-11
Identities = 60/179 (33%), Positives = 76/179 (42%), Gaps = 56/179 (31%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE---------------------------LQLP 101
N++LGQ+AP GTGE +YL+ ML + LQ
Sbjct: 1461 NLILGQMAPAGTGEFDVYLDQNMLMGVVSSNAGLMTADGKGLLGDGAATPYDSNSPLQDN 1520
Query: 102 SYM--DGLDFGMTPGRSPISGTPY---------HEGMMSPSYMLSPNLRLSPTNDAQFSP 248
Y+ D +P R S TP G SP SP SP++ SP
Sbjct: 1521 MYIGTPDPDSAFSPIRQAGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSP 1580
Query: 249 ----YVGGMAFSPT------------SSPGYSPSSPGYSPSSPGYSPTSPGY--SPTSP 371
Y +SPT SSPG+SP+SP ++P+SP YSPTSPGY SPTSP
Sbjct: 1581 TSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSP 1639
Score = 70.9 bits (172), Expect = 4e-11
Identities = 44/88 (50%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYMLSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSP 287
+P SP SG +P GM SP +M SP +PT+ A +SP G SPTS P
Sbjct: 1582 SPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPVFAPTSPA-YSPTSPGYQQSPTS-P 1639
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1640 SYSPTSPGFSPTSPNYSPTSPSFSPASP 1667
Score = 68.6 bits (166), Expect = 2e-10
Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
F +PG SP S SP+Y SP + SPT+ + +SP G FSPTS P YSP
Sbjct: 1605 FMSSPGFSPASPV---FAPTSPAYSPTSPGYQQSPTSPS-YSPTSPG--FSPTS-PNYSP 1657
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP +SP+SP +SPTSP YSPTSP
Sbjct: 1658 TSPSFSPASPAFSPTSPSYSPTSP 1681
Score = 58.9 bits (141), Expect = 2e-07
Identities = 45/99 (45%), Positives = 53/99 (53%), Gaps = 19/99 (19%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM--------LSPNLRLSPTNDAQFSPYVGGMAFSPTSSP 287
+P SP S Y + SPSY SPN SPT+ + FSP AFSPTS P
Sbjct: 1622 SPAYSPTS-PGYQQSPTSPSYSPTSPGFSPTSPNY--SPTSPS-FSP--ASPAFSPTS-P 1674
Query: 288 GYSPSSPGY-----------SPSSPGYSPTSPGYSPTSP 371
YSP+SP SP+SP Y+PTSPG+SPTSP
Sbjct: 1675 SYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSP 1713
Score = 54.7 bits (130), Expect = 3e-06
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSS 305
+P S T SP+ S LSPT+ +++P G +SPTS YSP+S
Sbjct: 1663 SPASPAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPG--WSPTSPETYSPTS 1720
Query: 306 PGYS--PSSPGYSPTSPGYSPTSP 371
P +S P+SPG PTSPGYSPTSP
Sbjct: 1721 PNFSGSPTSPG-GPTSPGYSPTSP 1743
[133][TOP]
>UniRef100_C1GHL1 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb18 RepID=C1GHL1_PARBD
Length = 1746
Score = 70.9 bits (172), Expect = 4e-11
Identities = 60/179 (33%), Positives = 76/179 (42%), Gaps = 56/179 (31%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE---------------------------LQLP 101
N++LGQ+AP GTGE +YL+ ML + LQ
Sbjct: 1456 NLILGQMAPAGTGEFDVYLDQNMLMGVVSSNAGLMTADGKGLLGDGAATPYDSNSPLQDN 1515
Query: 102 SYM--DGLDFGMTPGRSPISGTPY---------HEGMMSPSYMLSPNLRLSPTNDAQFSP 248
Y+ D +P R S TP G SP SP SP++ SP
Sbjct: 1516 MYIGTPDPDSAFSPIRQAGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSP 1575
Query: 249 ----YVGGMAFSPT------------SSPGYSPSSPGYSPSSPGYSPTSPGY--SPTSP 371
Y +SPT SSPG+SP+SP ++P+SP YSPTSPGY SPTSP
Sbjct: 1576 TSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 44/88 (50%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYMLSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSP 287
+P SP SG +P GM SP +M SP +PT+ A +SP G SPTS P
Sbjct: 1577 SPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPVFAPTSPA-YSPTSPGYQQSPTS-P 1634
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1635 SYSPTSPGFSPTSPSYSPTSPSFSPASP 1662
Score = 68.6 bits (166), Expect = 2e-10
Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
F +PG SP S SP+Y SP + SPT+ + +SP G FSPTS P YSP
Sbjct: 1600 FMSSPGFSPASPV---FAPTSPAYSPTSPGYQQSPTSPS-YSPTSPG--FSPTS-PSYSP 1652
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP +SP+SP +SPTSP YSPTSP
Sbjct: 1653 TSPSFSPASPAFSPTSPSYSPTSP 1676
Score = 56.6 bits (135), Expect = 8e-07
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSS 305
+P S T SP+ S LSPT+ +++P G +SPTS YSP+S
Sbjct: 1658 SPASPAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPG--WSPTSPETYSPTS 1715
Query: 306 PGYS--------PSSPGYSPTSPGYSPTSP 371
P +S P+SPGYSPTSP +SPTSP
Sbjct: 1716 PNFSGSPTSPGGPTSPGYSPTSPTFSPTSP 1745
[134][TOP]
>UniRef100_C0SE75 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
Pb03 RepID=C0SE75_PARBP
Length = 2106
Score = 70.9 bits (172), Expect = 4e-11
Identities = 60/179 (33%), Positives = 76/179 (42%), Gaps = 56/179 (31%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE---------------------------LQLP 101
N++LGQ+AP GTGE +YL+ ML + LQ
Sbjct: 1456 NLILGQMAPAGTGEFDVYLDQNMLMGVVSSNAGLMTADGKGLLGDGAATPYDSNSPLQDN 1515
Query: 102 SYM--DGLDFGMTPGRSPISGTPY---------HEGMMSPSYMLSPNLRLSPTNDAQFSP 248
Y+ D +P R S TP G SP SP SP++ SP
Sbjct: 1516 MYIGTPDPDSAFSPIRQAGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSP 1575
Query: 249 ----YVGGMAFSPT------------SSPGYSPSSPGYSPSSPGYSPTSPGY--SPTSP 371
Y +SPT SSPG+SP+SP ++P+SP YSPTSPGY SPTSP
Sbjct: 1576 TSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSP 1634
Score = 70.9 bits (172), Expect = 4e-11
Identities = 44/88 (50%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYMLSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSP 287
+P SP SG +P GM SP +M SP +PT+ A +SP G SPTS P
Sbjct: 1577 SPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPVFAPTSPA-YSPTSPGYQQSPTS-P 1634
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1635 SYSPTSPGFSPTSPSYSPTSPSFSPASP 1662
Score = 68.6 bits (166), Expect = 2e-10
Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
F +PG SP S SP+Y SP + SPT+ + +SP G FSPTS P YSP
Sbjct: 1600 FMSSPGFSPASPV---FAPTSPAYSPTSPGYQQSPTSPS-YSPTSPG--FSPTS-PSYSP 1652
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP +SP+SP +SPTSP YSPTSP
Sbjct: 1653 TSPSFSPASPAFSPTSPSYSPTSP 1676
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/97 (45%), Positives = 52/97 (53%), Gaps = 17/97 (17%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSPGY 293
+P SP S Y + SPSY SP SPT+ + FSP AFSPTS P Y
Sbjct: 1617 SPAYSPTS-PGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPS-FSP--ASPAFSPTS-PSY 1671
Query: 294 SPSSPGY-----------SPSSPGYSPTSPGYSPTSP 371
SP+SP SP+SP Y+PTSPG+SPTSP
Sbjct: 1672 SPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSP 1708
Score = 54.7 bits (130), Expect = 3e-06
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSS 305
+P S T SP+ S LSPT+ +++P G +SPTS YSP+S
Sbjct: 1658 SPASPAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPG--WSPTSPETYSPTS 1715
Query: 306 PGYS--PSSPGYSPTSPGYSPTSP 371
P +S P+SPG PTSPGYSPTSP
Sbjct: 1716 PNFSGSPTSPG-GPTSPGYSPTSP 1738
[135][TOP]
>UniRef100_C6HNU4 DNA-directed RNA polymerase II n=1 Tax=Ajellomyces capsulatus H143
RepID=C6HNU4_AJECH
Length = 668
Score = 70.5 bits (171), Expect = 6e-11
Identities = 59/179 (32%), Positives = 76/179 (42%), Gaps = 56/179 (31%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE---------------------------LQLP 101
N++LGQ+AP GTGE +YL+ +ML + LQ
Sbjct: 377 NLILGQMAPAGTGEFDVYLDQDMLMGVVSSNAGLMAADGKGLLSDGAATPYDSSSPLQDN 436
Query: 102 SYM--DGLDFGMTPGRSPISGTPY---------HEGMMSPSYMLSPNLRLSPTNDAQFSP 248
Y+ D +P R S TP G SP SP SP++ SP
Sbjct: 437 MYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSP 496
Query: 249 ----YVGGMAFSPT------------SSPGYSPSSPGYSPSSPGYSPTSPGY--SPTSP 371
Y +SPT SSPG+SP+SP ++P+SP YSPTSP Y SPTSP
Sbjct: 497 TSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSP 555
Score = 68.9 bits (167), Expect = 2e-10
Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
F +PG SP S SP+Y SP+ + SPT+ + +SP G FSPTS P YSP
Sbjct: 521 FMSSPGFSPASPA---FAPTSPAYSPTSPSYQQSPTSPS-YSPTSPG--FSPTS-PSYSP 573
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP +SP+SP +SPTSP YSPTSP
Sbjct: 574 TSPSFSPASPAFSPTSPSYSPTSP 597
Score = 68.6 bits (166), Expect = 2e-10
Identities = 43/88 (48%), Positives = 53/88 (60%), Gaps = 8/88 (9%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYMLSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSP 287
+P SP SG +P GM SP +M SP +PT+ A +SP SPTS P
Sbjct: 498 SPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPAFAPTSPA-YSPTSPSYQQSPTS-P 555
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 556 SYSPTSPGFSPTSPSYSPTSPSFSPASP 583
Score = 58.5 bits (140), Expect = 2e-07
Identities = 44/97 (45%), Positives = 53/97 (54%), Gaps = 17/97 (17%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSPGY 293
+P SP S + Y + SPSY SP SPT+ + FSP AFSPTS P Y
Sbjct: 538 SPAYSPTSPS-YQQSPTSPSYSPTSPGFSPTSPSYSPTSPS-FSP--ASPAFSPTS-PSY 592
Query: 294 SPSSPGY-----------SPSSPGYSPTSPGYSPTSP 371
SP+SP SP+SP Y+PTSPG+SPTSP
Sbjct: 593 SPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSP 629
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSS 305
+P S T SP+ +S LSPT+ +++P G +SPTS YSP+S
Sbjct: 579 SPASPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPG--WSPTSPETYSPTS 636
Query: 306 PGYS--------PSSPGYSPTSPGYSPTSP 371
P +S P+SPGYSPTSP ++P SP
Sbjct: 637 PNFSGSPTSPGGPTSPGYSPTSPTFNPISP 666
[136][TOP]
>UniRef100_C0NEY2 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
RepID=C0NEY2_AJECG
Length = 1234
Score = 70.5 bits (171), Expect = 6e-11
Identities = 59/179 (32%), Positives = 76/179 (42%), Gaps = 56/179 (31%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE---------------------------LQLP 101
N++LGQ+AP GTGE +YL+ +ML + LQ
Sbjct: 943 NLILGQMAPAGTGEFDVYLDQDMLMGVVSSNAGLMAADGKGLLSDGAATPYDSSSPLQDN 1002
Query: 102 SYM--DGLDFGMTPGRSPISGTPY---------HEGMMSPSYMLSPNLRLSPTNDAQFSP 248
Y+ D +P R S TP G SP SP SP++ SP
Sbjct: 1003 MYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSP 1062
Query: 249 ----YVGGMAFSPT------------SSPGYSPSSPGYSPSSPGYSPTSPGY--SPTSP 371
Y +SPT SSPG+SP+SP ++P+SP YSPTSP Y SPTSP
Sbjct: 1063 TSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSP 1121
Score = 68.9 bits (167), Expect = 2e-10
Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
F +PG SP S SP+Y SP+ + SPT+ + +SP G FSPTS P YSP
Sbjct: 1087 FMSSPGFSPASPA---FAPTSPAYSPTSPSYQQSPTSPS-YSPTSPG--FSPTS-PSYSP 1139
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP +SP+SP +SPTSP YSPTSP
Sbjct: 1140 TSPSFSPASPAFSPTSPSYSPTSP 1163
Score = 68.6 bits (166), Expect = 2e-10
Identities = 43/88 (48%), Positives = 53/88 (60%), Gaps = 8/88 (9%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYMLSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSP 287
+P SP SG +P GM SP +M SP +PT+ A +SP SPTS P
Sbjct: 1064 SPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPAFAPTSPA-YSPTSPSYQQSPTS-P 1121
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1122 SYSPTSPGFSPTSPSYSPTSPSFSPASP 1149
Score = 58.5 bits (140), Expect = 2e-07
Identities = 44/97 (45%), Positives = 53/97 (54%), Gaps = 17/97 (17%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSPGY 293
+P SP S + Y + SPSY SP SPT+ + FSP AFSPTS P Y
Sbjct: 1104 SPAYSPTSPS-YQQSPTSPSYSPTSPGFSPTSPSYSPTSPS-FSP--ASPAFSPTS-PSY 1158
Query: 294 SPSSPGY-----------SPSSPGYSPTSPGYSPTSP 371
SP+SP SP+SP Y+PTSPG+SPTSP
Sbjct: 1159 SPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSP 1195
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSS 305
+P S T SP+ +S LSPT+ +++P G +SPTS YSP+S
Sbjct: 1145 SPASPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPG--WSPTSPETYSPTS 1202
Query: 306 PGYS--------PSSPGYSPTSPGYSPTSP 371
P +S P+SPGYSPTSP ++P SP
Sbjct: 1203 PNFSGSPTSPGGPTSPGYSPTSPTFNPISP 1232
[137][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6H9U6_PENCW
Length = 1733
Score = 70.5 bits (171), Expect = 6e-11
Identities = 57/169 (33%), Positives = 72/169 (42%), Gaps = 46/169 (27%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEG-- 176
N++LGQ+AP GTGE +YL+ +L + + G S + T Y G
Sbjct: 1448 NLILGQMAPAGTGEFDVYLDQSLLNTVVSNNARYGLMGAVGAKDAIISDGAATQYDTGSP 1507
Query: 177 MMSPSYML--SPNLRLSPTNDAQFSPYVGGM---------------------AFSPTS-- 281
M S YM PN SP + P GG+ +SPTS
Sbjct: 1508 MASSPYMAGGDPNSTFSPMHQIGQEP-TGGLTEYQATTSTFGGFSPAARSPGGYSPTSPF 1566
Query: 282 -----SPGYSPS--------------SPGYSPSSPGYSPTSPGYSPTSP 371
SPGYSPS SPG+SP+SP + PTSP YSPTSP
Sbjct: 1567 NTSPTSPGYSPSSSYSPTSPGIGMMTSPGFSPASPTFQPTSPAYSPTSP 1615
Score = 65.5 bits (158), Expect = 2e-09
Identities = 41/87 (47%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +3
Query: 114 GLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPG 290
G+ +PG SP S T SP+Y SP + +SP G FSPTS P
Sbjct: 1587 GIGMMTSPGFSPASPTFQPT---SPAYSPTSPAYGQASPTSPSYSPTSPG--FSPTS-PN 1640
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SP +SP+SP +SPTSP YSPTSP
Sbjct: 1641 YSPTSPSFSPASPAFSPTSPSYSPTSP 1667
Score = 64.3 bits (155), Expect = 4e-09
Identities = 44/104 (42%), Positives = 53/104 (50%), Gaps = 26/104 (25%)
Frame = +3
Query: 138 GRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGM-----------------A 266
G SP S P++ SP Y SP+ SPT SP +G M A
Sbjct: 1559 GYSPTS--PFNTSPTSPGY--SPSSSYSPT-----SPGIGMMTSPGFSPASPTFQPTSPA 1609
Query: 267 FSPTS---------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SPTS SP YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1610 YSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASP 1653
Score = 57.4 bits (137), Expect = 5e-07
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 12/75 (16%)
Frame = +3
Query: 183 SPSYM-LSPNL----RLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSSPGYS-----PSS 326
SPSY SP + LSPT+ +++P G +SPTS YSP+SP +S P+S
Sbjct: 1659 SPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPG--WSPTSPQSYSPTSPNFSGSPTSPTS 1716
Query: 327 PGYSPTSPGYSPTSP 371
P YSPTSP YSPTSP
Sbjct: 1717 PAYSPTSPAYSPTSP 1731
[138][TOP]
>UniRef100_A6QYA7 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
RepID=A6QYA7_AJECN
Length = 1747
Score = 70.5 bits (171), Expect = 6e-11
Identities = 59/179 (32%), Positives = 76/179 (42%), Gaps = 56/179 (31%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE---------------------------LQLP 101
N++LGQ+AP GTGE +YL+ +ML + LQ
Sbjct: 1456 NLILGQMAPAGTGEFDVYLDQDMLMGVVSSNAGLMAADGKGLLSDGAATPYDSSSPLQDN 1515
Query: 102 SYM--DGLDFGMTPGRSPISGTPY---------HEGMMSPSYMLSPNLRLSPTNDAQFSP 248
Y+ D +P R S TP G SP SP SP++ SP
Sbjct: 1516 MYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSP 1575
Query: 249 ----YVGGMAFSPT------------SSPGYSPSSPGYSPSSPGYSPTSPGY--SPTSP 371
Y +SPT SSPG+SP+SP ++P+SP YSPTSP Y SPTSP
Sbjct: 1576 TSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSP 1634
Score = 68.9 bits (167), Expect = 2e-10
Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
F +PG SP S SP+Y SP+ + SPT+ + +SP G FSPTS P YSP
Sbjct: 1600 FMSSPGFSPASPA---FAPTSPAYSPTSPSYQQSPTSPS-YSPTSPG--FSPTS-PSYSP 1652
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP +SP+SP +SPTSP YSPTSP
Sbjct: 1653 TSPSFSPASPAFSPTSPSYSPTSP 1676
Score = 68.6 bits (166), Expect = 2e-10
Identities = 43/88 (48%), Positives = 53/88 (60%), Gaps = 8/88 (9%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYMLSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSP 287
+P SP SG +P GM SP +M SP +PT+ A +SP SPTS P
Sbjct: 1577 SPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPAFAPTSPA-YSPTSPSYQQSPTS-P 1634
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1635 SYSPTSPGFSPTSPSYSPTSPSFSPASP 1662
Score = 58.5 bits (140), Expect = 2e-07
Identities = 44/97 (45%), Positives = 53/97 (54%), Gaps = 17/97 (17%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-----LSPTNDAQFSPYVGGMAFSPTSSPGY 293
+P SP S + Y + SPSY SP SPT+ + FSP AFSPTS P Y
Sbjct: 1617 SPAYSPTSPS-YQQSPTSPSYSPTSPGFSPTSPSYSPTSPS-FSP--ASPAFSPTS-PSY 1671
Query: 294 SPSSPGY-----------SPSSPGYSPTSPGYSPTSP 371
SP+SP SP+SP Y+PTSPG+SPTSP
Sbjct: 1672 SPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSP 1708
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSS 305
+P S T SP+ +S LSPT+ +++P G +SPTS YSP+S
Sbjct: 1658 SPASPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPG--WSPTSPETYSPTS 1715
Query: 306 PGYS--------PSSPGYSPTSPGYSPTSP 371
P +S P+SPGYSPTSP ++P SP
Sbjct: 1716 PNFSGSPTSPGGPTSPGYSPTSPTFNPISP 1745
[139][TOP]
>UniRef100_B3NUC1 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
RepID=B3NUC1_DROER
Length = 1889
Score = 70.1 bits (170), Expect = 7e-11
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTN-----DAQFSPYVGGMAFSPTSSPG 290
G +P S TP+ + SPS+ S + SP N A +SP ++SPTS P
Sbjct: 1639 GYSPTSPVYSPTPHFQS--SPSFAGSGSNIYSPANAYSPSSANYSP--NSPSYSPTS-PS 1693
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1694 YSPSSPSYSPTSPCYSPTSPSYSPTSP 1720
Score = 59.3 bits (142), Expect = 1e-07
Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +3
Query: 129 MTPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
+TP SP S H SP+Y + ++ SPT+ +SP SP SP Y+P
Sbjct: 1725 VTPSYSPTSPNYSASPHYSPASPAYSQT-GVKYSPTSPT-YSPPSPSYDGSP-GSPQYTP 1781
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1782 GSPQYSPASPKYSPTSPLYSPSSP 1805
Score = 57.8 bits (138), Expect = 4e-07
Identities = 41/103 (39%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Frame = +3
Query: 138 GRSPISGTPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSS 305
G SP S +P H G SP +SP SP+ +SP S +SP YSPSS
Sbjct: 1544 GMSP-SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSS 1602
Query: 306 PGYSPSSP---------------------GYSPTSPGYSPTSP 371
P YSP+SP GYSP+S GYSPTSP
Sbjct: 1603 PNYSPTSPLYASASPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1645
Score = 57.0 bits (136), Expect = 6e-07
Identities = 43/102 (42%), Positives = 51/102 (50%), Gaps = 25/102 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP + SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPGP----SMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPT 365
SP GYSPSS GYSPTSP YSPT
Sbjct: 1609 SPLYASASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPT 1650
Score = 56.2 bits (134), Expect = 1e-06
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P T
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGAAMFIGGGSTPSMTPPM-T 1507
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP P + + +P GG +FSP+++ S SP +SP+ PG SP
Sbjct: 1508 PW-ANCNTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 1558
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 1559 SSPGPSMSPYFPASP 1573
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1824 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1875
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1876 AYSPSSP 1882
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1790 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1842
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1843 PTSPTYTPTARNYSPTSPMYSPTAP 1867
[140][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
macrandra RepID=Q9C428_9FUNG
Length = 1603
Score = 70.1 bits (170), Expect = 7e-11
Identities = 62/188 (32%), Positives = 77/188 (40%), Gaps = 65/188 (34%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLK-NAIE----LQLPSYMDGLDFGMTPG-RSPIS--- 155
NI+LGQLAP+GTGE + L++++L+ NA L SY G TP R+P+S
Sbjct: 1378 NIILGQLAPLGTGEFDVLLDEQVLEANARSATGGLYTNSYTADFSGGKTPDHRAPMSPSG 1437
Query: 156 ---------GTPYHEGMMSPSYMLSP--------NLRLSPTNDAQFSPYVGGMAFSPT-- 278
G PY E M SP R +P SPY P
Sbjct: 1438 AQFYPASPGGAPY-ENYPGDQPMFSPIGVDSGRDTGRWTPGMSGGQSPYASTHRCDPRLM 1496
Query: 279 -------------------------------------SSPGYSPSSPGYSPSSPGYSPTS 347
+SPGYSP+SP YSP+SP Y+PTS
Sbjct: 1497 NKRSLRSPSSPVYSMWLASFGLLQPFLIVRCFGVISPTSPGYSPTSPSYSPTSPSYTPTS 1556
Query: 348 PGYSPTSP 371
P YSPTSP
Sbjct: 1557 PSYSPTSP 1564
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/80 (50%), Positives = 50/80 (62%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+PG SP S + SPSY +PT+ + +SP ++SPTS P YSP+SP
Sbjct: 1535 SPGYSPTSPS---YSPTSPSY--------TPTSPS-YSPT--SPSYSPTS-PSYSPTSPS 1579
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1580 YSPTSPSYSPTSPSYSPTSP 1599
Score = 62.8 bits (151), Expect = 1e-08
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Frame = +3
Query: 174 GMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGY 335
G++ P ++ +SPT+ +SP ++SPTS SP YSP+SP YSP+SP Y
Sbjct: 1517 GLLQPFLIVRCFGVISPTSPG-YSPT--SPSYSPTSPSYTPTSPSYSPTSPSYSPTSPSY 1573
Query: 336 SPTSPGYSPTSP 371
SPTSP YSPTSP
Sbjct: 1574 SPTSPSYSPTSP 1585
[141][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
RepID=Q6CBQ3_YARLI
Length = 1750
Score = 70.1 bits (170), Expect = 7e-11
Identities = 65/190 (34%), Positives = 78/190 (41%), Gaps = 67/190 (35%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISG-------- 158
NIMLGQLAP+GTG + L+++ L LP+ D+ T G + G
Sbjct: 1433 NIMLGQLAPLGTGNFGVMLDEDQLST-----LPA-----DYSKTAGIAAGHGEMGSADGA 1482
Query: 159 -TPYHEGMMSPSY-----------MLSP-NLRLSPTNDAQFSPYVG--------GMAFSP 275
TPY SP+Y + SP +P FS Y G G A++P
Sbjct: 1483 ATPYDSS--SPAYDALQARGGGDVIFSPIGTSGAPEMSGGFSEYGGFGHGGDGSGSAYTP 1540
Query: 276 TS---------------SPGYSPSSPG-----------------------YSPSSPGYSP 341
TS SP YSPSSPG YSPSSP YSP
Sbjct: 1541 TSPFSSFGAASPGFAATSPSYSPSSPGMGLGAASPSFSPSSPAFAATSPSYSPSSPSYSP 1600
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 1601 TSPSYSPTSP 1610
Score = 65.5 bits (158), Expect = 2e-09
Identities = 35/66 (53%), Positives = 42/66 (63%)
Frame = +3
Query: 174 GMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 353
G SPS+ SP+ +SP ++SPTS P YSP+SP YSP+SP YSPTSP
Sbjct: 1571 GAASPSF--SPSSPAFAATSPSYSP--SSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPS 1625
Query: 354 YSPTSP 371
YSPTSP
Sbjct: 1626 YSPTSP 1631
Score = 65.5 bits (158), Expect = 2e-09
Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ + + + SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1695
Query: 360 PTSP 371
P+SP
Sbjct: 1696 PSSP 1699
Score = 65.1 bits (157), Expect = 2e-09
Identities = 38/64 (59%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP + L + + FSP AF+ TS P YSPSSP YSP+SP YSPTSP YS
Sbjct: 1558 SPSYSPSSPGMGLGAASPS-FSP--SSPAFAATS-PSYSPSSPSYSPTSPSYSPTSPSYS 1613
Query: 360 PTSP 371
PTSP
Sbjct: 1614 PTSP 1617
Score = 65.1 bits (157), Expect = 2e-09
Identities = 40/91 (43%), Positives = 49/91 (53%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT 278
PSY GM G + S +P + S SP+ +SP ++SPT
Sbjct: 1559 PSYSPSSP-GMGLGAASPSFSPSSPAFAATSPSYSPSSPSYSPTSPSYSPT--SPSYSPT 1615
Query: 279 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
S P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1616 S-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645
Score = 64.7 bits (156), Expect = 3e-09
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P + T SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1578 SPSSPAFAATSPSYSPSSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1631
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1632 SYSPTSPSYSPTSPSYSPTSP 1652
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1602 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1655
Query: 360 PTSP 371
PTSP
Sbjct: 1656 PTSP 1659
Score = 62.8 bits (151), Expect = 1e-08
Identities = 40/83 (48%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
+P SP S +P SPSY SP+ SPT+ + +SP F+ +S YSP+
Sbjct: 1658 SPSYSPTSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSP--SSPKFNAGASTSYSPT 1712
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1713 SPSYSPTSPSYSPTSPSYSPTSP 1735
Score = 62.0 bits (149), Expect = 2e-08
Identities = 40/80 (50%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 1592 SPSSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 1645
Query: 309 GYSPSSPGYSPTSPGYSPTS 368
YSP+SP YSPTSP YSPTS
Sbjct: 1646 SYSPTSPSYSPTSPSYSPTS 1665
[142][TOP]
>UniRef100_UPI000051AA8E PREDICTED: similar to DNA-directed RNA polymerase II largest
subunit (RPB1) n=1 Tax=Apis mellifera
RepID=UPI000051AA8E
Length = 452
Score = 69.7 bits (169), Expect = 9e-11
Identities = 39/85 (45%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPS---YMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
G++P S S P G PS Y +SP SP+ Y+ SSP YS
Sbjct: 95 GLSPAYSAYSPQPGSPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYS 154
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 155 PTSPTYSPTSPNYSPTSPSYSPTSP 179
Score = 69.3 bits (168), Expect = 1e-10
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +3
Query: 144 SPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSP 320
SP G SP+Y+ SP++ S N + SP +SPTS P YSP+SP YSP
Sbjct: 123 SPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSP-----TYSPTS-PNYSPTSPSYSP 176
Query: 321 SSPGYSPTSPGYSPTSP 371
+SP YSPTSP YSPTSP
Sbjct: 177 TSPSYSPTSPSYSPTSP 193
Score = 65.1 bits (157), Expect = 2e-09
Identities = 39/70 (55%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSP 341
SPSY SP+ S N SP ++SPTS SP YSP+SP YSPSSP YSP
Sbjct: 269 SPSYSPTSPSYSPSSPNYTPASP-----SYSPTSPSYSPSSPQYSPASPSYSPSSPKYSP 323
Query: 342 TSPGYSPTSP 371
TSP YSPTSP
Sbjct: 324 TSPSYSPTSP 333
Score = 64.7 bits (156), Expect = 3e-09
Identities = 41/81 (50%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T + SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP
Sbjct: 154 SPTSPTYSPTSPNYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSP 207
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 208 SYSPTSPSYSPTSPSYSPTSP 228
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 178 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 231
Query: 360 PTSP 371
PTSP
Sbjct: 232 PTSP 235
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 185 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 238
Query: 360 PTSP 371
PTSP
Sbjct: 239 PTSP 242
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 192 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 245
Query: 360 PTSP 371
PTSP
Sbjct: 246 PTSP 249
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 199 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 252
Query: 360 PTSP 371
PTSP
Sbjct: 253 PTSP 256
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 206 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 259
Query: 360 PTSP 371
PTSP
Sbjct: 260 PTSP 263
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 213 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 266
Query: 360 PTSP 371
PTSP
Sbjct: 267 PTSP 270
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 220 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 273
Query: 360 PTSP 371
PTSP
Sbjct: 274 PTSP 277
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 227 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 280
Query: 360 PTSP 371
P+SP
Sbjct: 281 PSSP 284
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSPSSP Y+P SP YS
Sbjct: 241 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPSSPNYTPASPSYS 294
Query: 360 PTSP 371
PTSP
Sbjct: 295 PTSP 298
Score = 62.4 bits (150), Expect = 2e-08
Identities = 44/91 (48%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-LSPT---NDAQFSPYVGGMAFSPTS----- 281
+P SP S P H S Y SPN SPT Q+SP +SPTS
Sbjct: 360 SPSYSPSS--PQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSP--SSTKYSPTSPTYTP 415
Query: 282 -SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP PGYSPTSP YSP SP
Sbjct: 416 TSPSYSPTSPTYSPPVPGYSPTSPTYSPASP 446
Score = 58.9 bits (141), Expect = 2e-07
Identities = 38/87 (43%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPG 290
TP S T SP Y SP+ S + SP ++SPTS SP
Sbjct: 287 TPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSP-----SYSPTSPSFAGTSPQ 341
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
Y+P+SP YSP+SP YSPTSP YSP+SP
Sbjct: 342 YTPASPTYSPTSPTYSPTSPSYSPSSP 368
Score = 56.6 bits (135), Expect = 8e-07
Identities = 57/173 (32%), Positives = 71/173 (41%), Gaps = 53/173 (30%)
Frame = +3
Query: 12 LGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-----GLDFGM--TPGRSPISGTPYH 170
+GQL IGTG L L+ E K IE+ + G+ FG TP SP TP+
Sbjct: 1 MGQLPRIGTGCFDLLLDAEKCKVGIEIPMAVGAGVMGTAGMFFGSVATPSMSP-QMTPWM 59
Query: 171 EGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT------------------------ 278
+P Y S +SP + +P GG FSP+
Sbjct: 60 GA--TPGYGASS---MSPALGSGMTP--GGACFSPSGASDASGLSPAYSAYSPQPGSPGS 112
Query: 279 ---------------SSPGYSPSSPGY-------SPSSPGYSPTSPGYSPTSP 371
+SP YSP+SP Y +PSSP YSPTSP YSPTSP
Sbjct: 113 PGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSP 165
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/71 (49%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPG--------YS 338
SPSY SP Q++P +SPTS P YSP+SP YSPSSP YS
Sbjct: 325 SPSY--SPTSPSFAGTSPQYTP--ASPTYSPTS-PTYSPTSPSYSPSSPQHTASGSTRYS 379
Query: 339 PTSPGYSPTSP 371
P+SP YSPTSP
Sbjct: 380 PSSPNYSPTSP 390
[143][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2W4S0_PYRTR
Length = 1742
Score = 69.7 bits (169), Expect = 9e-11
Identities = 60/159 (37%), Positives = 76/159 (47%), Gaps = 36/159 (22%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISGTPYHEGMM 182
NIMLGQLAP+GTGE + +++ ML +E S M G G S + TPY G
Sbjct: 1447 NIMLGQLAPMGTGEFDVVMDNGMLLTMVEDN--SKMMGGAAGAGTYLSDGAATPYDLG-- 1502
Query: 183 SPSY-------------MLSPNLRLSPTND-------------AQFSPYVGGMAFSPTS- 281
SP+Y SP +D FSPY GG + +
Sbjct: 1503 SPTYEGGMGMGGGYDQVSFSPMAAAGGGDDQGGFTAYGGSYGSGGFSPYDGGRSPGGSGF 1562
Query: 282 ---SPGY-SPSSPGYSPSSPGYSPTSPG-----YSPTSP 371
SPG+ SP SPG+SP+SPGYSPTSPG ++ TSP
Sbjct: 1563 TGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRFAATSP 1601
Score = 67.4 bits (163), Expect = 5e-10
Identities = 45/92 (48%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Frame = +3
Query: 132 TPGRSPIS-GTPYHE-GMMSPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
+PG SP S GT SP YM SP SPT+ SP ++SPTS GYSP+
Sbjct: 1581 SPGYSPTSPGTASPRFAATSPGYMASPTSPHYSPTSPRYGSPT--SPSYSPTSPAGYSPT 1638
Query: 303 SPGYSPSSPGYSP---------TSPGYSPTSP 371
SP YSP+SP YSP TSP YSPTSP
Sbjct: 1639 SPQYSPTSPNYSPTSPTFMGGATSPAYSPTSP 1670
Score = 59.3 bits (142), Expect = 1e-07
Identities = 43/95 (45%), Positives = 51/95 (53%), Gaps = 15/95 (15%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS--------SP 287
+P SP S P + SPSY + SPT+ Q+SP +SPTS SP
Sbjct: 1609 SPHYSPTS--PRYGSPTSPSYSPTSPAGYSPTSP-QYSPTSPN--YSPTSPTFMGGATSP 1663
Query: 288 GYSPSSPGYSPSSPGYSPTSPGY-------SPTSP 371
YSP+SP YSP+SP YSPTSP Y SPTSP
Sbjct: 1664 AYSPTSPQYSPTSPQYSPTSPQYQATSDRRSPTSP 1698
Score = 54.3 bits (129), Expect = 4e-06
Identities = 46/99 (46%), Positives = 54/99 (54%), Gaps = 19/99 (19%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSP-----YVGGMAFSPTS--SP 287
+P SP S T + G SP+Y SP + SPT+ Q+SP SPTS SP
Sbjct: 1646 SPNYSPTSPT-FMGGATSPAYSPTSP--QYSPTSP-QYSPTSPQYQATSDRRSPTSPTSP 1701
Query: 288 GYSPSSPGYSPSSPG---------YSPTSPG--YSPTSP 371
YSP+SP YSP+SP YSPTSPG YSPTSP
Sbjct: 1702 QYSPTSPRYSPTSPAGSFSPTSPRYSPTSPGPAYSPTSP 1740
[144][TOP]
>UniRef100_A1CNZ4 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
RepID=A1CNZ4_ASPCL
Length = 1765
Score = 69.7 bits (169), Expect = 9e-11
Identities = 42/95 (44%), Positives = 52/95 (54%), Gaps = 15/95 (15%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMA-----FSPTS---- 281
+PG SP + +P G+ SP + SP SP FSP A +SPTS
Sbjct: 1580 SPGYSPTTSYSPIAPGITSPRFNTSPGFMTSPG----FSPVSPSFAPTSPAYSPTSPAYG 1635
Query: 282 -----SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1636 QASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASP 1670
Score = 66.6 bits (161), Expect = 8e-10
Identities = 41/92 (44%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P + F +PG SP+S + SP+Y SP + +SP G FSP
Sbjct: 1599 PRFNTSPGFMTSPGFSPVSPS---FAPTSPAYSPTSPAYGQASPTSPSYSPTSPG--FSP 1653
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP +SP+SP +SPTSP YSPTSP
Sbjct: 1654 TS-PNYSPTSPSFSPASPAFSPTSPSYSPTSP 1684
Score = 64.7 bits (156), Expect = 3e-09
Identities = 53/143 (37%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLK------------NAIELQLPSYMDG----LDFGMT 134
N++LGQ+AP GTGE LYL+ +L AI + DG D G
Sbjct: 1456 NLILGQMAPAGTGEFDLYLDQTLLNTVVSNNARFGVMGAIGAKDAIISDGAATQYDTGSP 1515
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVG-GMAFSP--TSSPGYSPSS 305
S GTP + SP +P ++ P G G FSP TS GYSP+S
Sbjct: 1516 MQESAYIGTPDPDSAFSPIGQAGAE---TPGGFTEYQPTGGFGGGFSPAATSPAGYSPTS 1572
Query: 306 P-GYSPSSPGYSPTSPGYSPTSP 371
P +P+SPGYSPT+ YSP +P
Sbjct: 1573 PFSANPTSPGYSPTT-SYSPIAP 1594
Score = 54.7 bits (130), Expect = 3e-06
Identities = 38/98 (38%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S SPSY SP + N + SP +FSP +SP +SP+SP
Sbjct: 1624 SPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSP-----SFSP-ASPAFSPTSP 1677
Query: 309 GYSPSSPG-----------------YSPTSPGYSPTSP 371
YSP+SP Y+PTSPG+SPTSP
Sbjct: 1678 SYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP 1715
Score = 53.5 bits (127), Expect = 7e-06
Identities = 42/101 (41%), Positives = 53/101 (52%), Gaps = 21/101 (20%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMA--FSPTS--SPGYS 296
+PG SP S + SPS+ SP + + + SP +GG SPTS SP Y+
Sbjct: 1648 SPGFSPTSP---NYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPTSPTSPKYT 1704
Query: 297 PSSPGYSPSSPG-YSPTSP---------------GYSPTSP 371
P+SPG+SP+SP YSPTSP GYSPTSP
Sbjct: 1705 PTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSP 1745
[145][TOP]
>UniRef100_Q010D7 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
RepID=Q010D7_OSTTA
Length = 1673
Score = 69.3 bits (168), Expect = 1e-10
Identities = 47/98 (47%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQL--PSYMDGLDFGMTPGRSPISGTPYHEG 176
NIMLGQ PIGTGE L+L+ EML +A+EL L + G MTPGR GTP + G
Sbjct: 1443 NIMLGQFCPIGTGEFKLHLDQEMLLDAVELDLFETARTPGHYGSMTPGR---EGTPGY-G 1498
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPG 290
SPS++LSP A SP+ MAFSP S G
Sbjct: 1499 AKSPSFLLSP-------GGAMMSPFDTSMAFSPYSDGG 1529
[146][TOP]
>UniRef100_B8M2Y2 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
RepID=B8M2Y2_TALSN
Length = 1755
Score = 69.3 bits (168), Expect = 1e-10
Identities = 58/173 (33%), Positives = 74/173 (42%), Gaps = 50/173 (28%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE----LQLPSYMDGLDFGMTPG-------RSP 149
N++LGQLAP GTGE +YL+ ML + + L + D + G SP
Sbjct: 1454 NLILGQLAPAGTGEFDVYLDQNMLNTVVSSNTGIGLMGGLGAKDAMINDGAATQYDNNSP 1513
Query: 150 ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPY-----VGGMA--------FSPTS--- 281
+ Y G P SP + A F+ Y +GG + +SPTS
Sbjct: 1514 MMENGY-IGTPDPDAKFSPIRQAGSETPAGFTSYQPSQGLGGFSPAPQSPGGYSPTSPFN 1572
Query: 282 ----SPGYSPS-------------------SPGYSPSSPGYSPTSPGYSPTSP 371
SPGYSPS SPG+SPSSP + TSP YSPTSP
Sbjct: 1573 TSPVSPGYSPSSSYSPASPGMSITSPRFVTSPGFSPSSPNFQTTSPAYSPTSP 1625
Score = 62.4 bits (150), Expect = 2e-08
Identities = 43/99 (43%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Frame = +3
Query: 129 MTPGRSPISG-TPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVG---------GMAFS 272
++PG SP S +P GM SP ++ SP S N SP ++S
Sbjct: 1576 VSPGYSPSSSYSPASPGMSITSPRFVTSPGFSPSSPNFQTTSPAYSPTSPSYQQASPSYS 1635
Query: 273 PTS------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
PTS SP YSPSSP S SSP +SPTSP YSPTSP
Sbjct: 1636 PTSPRFSPSSPNYSPSSPNMSLSSPAFSPTSPTYSPTSP 1674
Score = 54.3 bits (129), Expect = 4e-06
Identities = 41/90 (45%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG--GMAFSPTSSPGYSPS 302
+P SP S + Y + SPSY SP S N + SP + AFSPTS P YSP+
Sbjct: 1617 SPAYSPTSPS-YQQA--SPSYSPTSPRFSPSSPNYSPSSPNMSLSSPAFSPTS-PTYSPT 1672
Query: 303 SPGY-------SPSSPGYSPTSPGYSPTSP 371
SP SP+SP YSP SP +SPTSP
Sbjct: 1673 SPAIGGTRQFSSPTSPKYSPASPAWSPTSP 1702
[147][TOP]
>UniRef100_A8N128 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
RepID=A8N128_COPC7
Length = 1642
Score = 69.3 bits (168), Expect = 1e-10
Identities = 56/140 (40%), Positives = 74/140 (52%), Gaps = 17/140 (12%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAI---ELQLPSYMDG-LDFGMTPGRSPISGTPYH 170
N+M GQ+AP+GTG + L+ +MLK+AI L + S + +D MTPG+ I TPY
Sbjct: 1385 NVMFGQMAPMGTGAFDVALDIDMLKDAIVDHRLPVQSMLAAQIDGAMTPGQVAI--TPY- 1441
Query: 171 EGMMSPSYMLSPNLRLSPTNDAQFSPYVGG----------MAF--SPTSSPGYSPSSPGY 314
SP ++ + + + FSP M+F SP + G SP PGY
Sbjct: 1442 -ATNSPDWIQDEFFK-GDSGPSAFSPLASNGAEDTANFQYMSFPQSPHGAGGMSP-GPGY 1498
Query: 315 SPSSP-GYSPTSPGYSPTSP 371
SPSSP YSPTSPG P SP
Sbjct: 1499 SPSSPNAYSPTSPGMVPRSP 1518
[148][TOP]
>UniRef100_UPI000023F34A hypothetical protein FG00916.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F34A
Length = 1758
Score = 68.9 bits (167), Expect = 2e-10
Identities = 62/199 (31%), Positives = 77/199 (38%), Gaps = 76/199 (38%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISG--TPYHEG 176
N+MLGQ+AP+GTG + L+ +ML+ I + GL GM I G TPY G
Sbjct: 1450 NVMLGQMAPMGTGNFDVLLDPKMLETVIS---DNSRMGLMAGMPTKSGDIEGAATPYDTG 1506
Query: 177 ----------MMSPSY----------------------------------------MLSP 206
M SP+ SP
Sbjct: 1507 SPMADSGYLSMSSPAAGNFSPIQGAGSDTPAGFDTVYGGGSVGFGGTTPMSPYNRGAASP 1566
Query: 207 NLRLSPTNDAQFSPYVGGMAFSPTS--------------SPGYSPSSPGY---------- 314
SPT+ +SP M +SPTS SP +SPSSP +
Sbjct: 1567 FSSTSPTSPFSYSPTSPNMGYSPTSPLIDGGGMGRYGPTSPSFSPSSPSFSPTSPMLRPT 1626
Query: 315 SPSSPGYSPTSPGYSPTSP 371
SP+SP YSPTSP YSPTSP
Sbjct: 1627 SPASPSYSPTSPSYSPTSP 1645
[149][TOP]
>UniRef100_Q9XZU8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
pseudoobscura pseudoobscura RepID=Q9XZU8_DROPS
Length = 1811
Score = 68.6 bits (166), Expect = 2e-10
Identities = 42/81 (51%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMM-SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S P S S M SP SP++ +SP ++SPTS P YSPSSP
Sbjct: 1566 SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSS-TNYSP--NSPSYSPTS-PSYSPSSP 1621
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1622 SYSPTSPCYSPTSPSYSPTSP 1642
Score = 67.0 bits (162), Expect = 6e-10
Identities = 43/89 (48%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTS------S 284
G +P S S T SP Y + N SP+ S Y G A+SP+S S
Sbjct: 1554 GYSPSASGYSPT-------SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNS 1606
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1607 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 1635
Score = 59.7 bits (143), Expect = 1e-07
Identities = 44/103 (42%), Positives = 52/103 (50%), Gaps = 25/103 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP Y SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1476 PGSSPSSPAP----SMSPYYPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1530
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPS+ GYSPTSP YSPTS
Sbjct: 1531 SPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS 1573
Score = 58.2 bits (139), Expect = 3e-07
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
TP SP S H SP+Y + + SPT+ +SP SP SP Y+P
Sbjct: 1648 TPSYSPTSPNYSASPHYSPASPAYSQT-GAKYSPTSPT-YSPPSPSYDGSP-GSPQYTPG 1704
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1705 SPQYSPASPKYSPTSPLYSPSSP 1727
Score = 56.6 bits (135), Expect = 8e-07
Identities = 57/173 (32%), Positives = 72/173 (41%), Gaps = 50/173 (28%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSP---- 149
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P
Sbjct: 1371 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGTAMFIGGGSTPSMTPPMTP 1430
Query: 150 --------ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQ---------------------F 242
P H M+P P+ S +DA
Sbjct: 1431 WVNCNTPRYFSPPGHVSAMTPG---GPSFSPSAASDASGMSPSWSPAHPGSSPSSPAPSM 1487
Query: 243 SPYVGGM-----AFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPGYSPTSP 371
SPY ++SPTS P Y+ SSPG YSPSSP YSPTSP Y+ SP
Sbjct: 1488 SPYYPASPSVSPSYSPTS-PNYTASSPGGASPNYSPSSPNYSPTSPLYAAASP 1539
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1746 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1797
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1798 AYSPSSP 1804
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1712 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1764
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1765 PTSPTYTPTARNYSPTSPMYSPTAP 1789
[150][TOP]
>UniRef100_Q9XZS1 DNA-directed RNA polymerase n=1 Tax=Drosophila guanche
RepID=Q9XZS1_DROGU
Length = 1889
Score = 68.6 bits (166), Expect = 2e-10
Identities = 42/81 (51%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMM-SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S P S S M SP SP++ +SP ++SPTS P YSPSSP
Sbjct: 1644 SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSS-TNYSP--NSPSYSPTS-PSYSPSSP 1699
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1700 SYSPTSPCYSPTSPSYSPTSP 1720
Score = 67.0 bits (162), Expect = 6e-10
Identities = 43/89 (48%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTS------S 284
G +P S S T SP Y + N SP+ S Y G A+SP+S S
Sbjct: 1632 GYSPSASGYSPT-------SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNS 1684
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1685 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 1713
Score = 59.7 bits (143), Expect = 1e-07
Identities = 44/103 (42%), Positives = 52/103 (50%), Gaps = 25/103 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP Y SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPAP----SMSPYYPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPS+ GYSPTSP YSPTS
Sbjct: 1609 SPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS 1651
Score = 58.2 bits (139), Expect = 3e-07
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
TP SP S H SP+Y + + SPT+ +SP SP SP Y+P
Sbjct: 1726 TPSYSPTSPNYSASPHYSPASPAYSQT-GAKYSPTSPT-YSPPSPSYDGSP-GSPQYTPG 1782
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1783 SPQYSPASPKYSPTSPLYSPSSP 1805
Score = 56.2 bits (134), Expect = 1e-06
Identities = 57/173 (32%), Positives = 72/173 (41%), Gaps = 50/173 (28%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSP---- 149
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGTAMFIGGGSTPSMTPPMTP 1508
Query: 150 --------ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQ---------------------F 242
P H M+P P+ S +DA
Sbjct: 1509 WVNCNTPRYFSPPGHVSAMTPG---GPSFSPSAASDASGMSPSWSPAHPGSSPSSPAPSM 1565
Query: 243 SPYVGGM-----AFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPGYSPTSP 371
SPY ++SPTS P Y+ SSPG YSPSSP YSPTSP Y+ SP
Sbjct: 1566 SPYYPASPSVSPSYSPTS-PNYTASSPGGASPNYSPSSPNYSPTSPLYAAPSP 1617
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1824 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1875
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1876 AYSPSSP 1882
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1790 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1842
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1843 PTSPTYTPTARNYSPTSPMYSPTAP 1867
[151][TOP]
>UniRef100_Q5EXZ8 RNA polymerase II largest subunit (Fragment) n=1 Tax=Periplaneta
americana RepID=Q5EXZ8_PERAM
Length = 97
Score = 68.6 bits (166), Expect = 2e-10
Identities = 42/86 (48%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
+P +P + T Y SPSY SP Q+SP +SPTS SP Y
Sbjct: 12 SPQHTPSASTRYSPS--SPSY--SPTSPTYSPTSPQYSP--SSSKYSPTSPTYTPTSPNY 65
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPSSP YSP+ PGYSPTSP YSPTSP
Sbjct: 66 SPSSPTYSPAVPGYSPTSPTYSPTSP 91
Score = 54.3 bits (129), Expect = 4e-06
Identities = 29/43 (67%), Positives = 30/43 (69%), Gaps = 8/43 (18%)
Frame = +3
Query: 267 FSPTSSPGYSPSSPG--------YSPSSPGYSPTSPGYSPTSP 371
+SPTS P YSPSSP YSPSSP YSPTSP YSPTSP
Sbjct: 1 YSPTS-PSYSPSSPQHTPSASTRYSPSSPSYSPTSPTYSPTSP 42
[152][TOP]
>UniRef100_Q29IN2 DNA-directed RNA polymerase n=1 Tax=Drosophila pseudoobscura
pseudoobscura RepID=Q29IN2_DROPS
Length = 1889
Score = 68.6 bits (166), Expect = 2e-10
Identities = 42/81 (51%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMM-SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S P S S M SP SP++ +SP ++SPTS P YSPSSP
Sbjct: 1644 SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSS-TNYSP--NSPSYSPTS-PSYSPSSP 1699
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1700 SYSPTSPCYSPTSPSYSPTSP 1720
Score = 67.0 bits (162), Expect = 6e-10
Identities = 43/89 (48%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTS------S 284
G +P S S T SP Y + N SP+ S Y G A+SP+S S
Sbjct: 1632 GYSPSASGYSPT-------SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNS 1684
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1685 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 1713
Score = 59.7 bits (143), Expect = 1e-07
Identities = 44/103 (42%), Positives = 52/103 (50%), Gaps = 25/103 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP Y SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPAP----SMSPYYPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPS+ GYSPTSP YSPTS
Sbjct: 1609 SPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS 1651
Score = 58.2 bits (139), Expect = 3e-07
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
TP SP S H SP+Y + + SPT+ +SP SP SP Y+P
Sbjct: 1726 TPSYSPTSPNYSASPHYSPASPAYSQT-GAKYSPTSPT-YSPPSPSYDGSP-GSPQYTPG 1782
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1783 SPQYSPASPKYSPTSPLYSPSSP 1805
Score = 56.6 bits (135), Expect = 8e-07
Identities = 57/173 (32%), Positives = 72/173 (41%), Gaps = 50/173 (28%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSP---- 149
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGTAMFIGGGSTPSMTPPMTP 1508
Query: 150 --------ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQ---------------------F 242
P H M+P P+ S +DA
Sbjct: 1509 WVNCNTPRYFSPPGHVSAMTPG---GPSFSPSAASDASGMSPSWSPAHPGSSPSSPAPSM 1565
Query: 243 SPYVGGM-----AFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPGYSPTSP 371
SPY ++SPTS P Y+ SSPG YSPSSP YSPTSP Y+ SP
Sbjct: 1566 SPYYPASPSVSPSYSPTS-PNYTASSPGGASPNYSPSSPNYSPTSPLYAAASP 1617
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1824 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1875
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1876 AYSPSSP 1882
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1790 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1842
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1843 PTSPTYTPTARNYSPTSPMYSPTAP 1867
[153][TOP]
>UniRef100_B4H2R8 DNA-directed RNA polymerase n=1 Tax=Drosophila persimilis
RepID=B4H2R8_DROPE
Length = 1804
Score = 68.6 bits (166), Expect = 2e-10
Identities = 53/140 (37%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYM---------DGLDFGMTPGRSP 149
NI++GQL +GTG L L+ E + IE+ L S M G MTP +P
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGTAMFIGGGSTPSMTPPMTP 1508
Query: 150 ISGTPYHEGMMSPSYMLS------PNLRLSPTNDAQFSP-YVGGMAFSPTSSPGYSPSSP 308
+S + SP+Y S PN S N + SP Y +++P ++P S
Sbjct: 1509 VSPS---YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYAAASPRYASTTPNFNPQST 1565
Query: 309 GYSPSSPGYSPTSPGYSPTS 368
GYSPS+ GYSPTSP YSPTS
Sbjct: 1566 GYSPSASGYSPTSPVYSPTS 1585
Score = 68.6 bits (166), Expect = 2e-10
Identities = 42/81 (51%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMM-SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S P S S M SP SP++ +SP ++SPTS P YSPSSP
Sbjct: 1578 SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSS-TNYSP--NSPSYSPTS-PSYSPSSP 1633
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1634 SYSPTSPCYSPTSPSYSPTSP 1654
Score = 67.0 bits (162), Expect = 6e-10
Identities = 43/89 (48%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTS------S 284
G +P S S T SP Y + N SP+ S Y G A+SP+S S
Sbjct: 1566 GYSPSASGYSPT-------SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNS 1618
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1619 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 1647
Score = 58.2 bits (139), Expect = 3e-07
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
TP SP S H SP+Y + + SPT+ +SP SP SP Y+P
Sbjct: 1660 TPSYSPTSPNYSASPHYSPASPAYSQT-GAKYSPTSPT-YSPPSPSYDGSP-GSPQYTPG 1716
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1717 SPQYSPASPKYSPTSPLYSPSSP 1739
[154][TOP]
>UniRef100_Q7SDN0 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
RepID=Q7SDN0_NEUCR
Length = 1752
Score = 68.6 bits (166), Expect = 2e-10
Identities = 63/174 (36%), Positives = 83/174 (47%), Gaps = 51/174 (29%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISG--TPYHEG 176
N+MLGQ+AP+GTG ++L+ +ML+ I + GL GMT S + G TPY G
Sbjct: 1455 NVMLGQMAPMGTGAFDVFLDPKMLETVIS---DNSRMGLMPGMTVKGSQLDGAATPYDTG 1511
Query: 177 M-MSPSYML---SPNL----------RLSPTNDAQFSPYVG------GMAFSPTSSP--- 287
M+ S L SP + SPTN+ + Y G G ++S +SP
Sbjct: 1512 SPMADSGFLGSYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVGGYGSGTSYSSATSPRAT 1571
Query: 288 ------------GYSPSSP--GYSP------------SSPGYSPTSPGYSPTSP 371
GYSPSSP GYSP SSP +SP+SP +SPTSP
Sbjct: 1572 SPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPSFSPTSP 1625
Score = 63.9 bits (154), Expect = 5e-09
Identities = 37/81 (45%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S SPSY SP+ + A++SP FSPTS P YSP+SP
Sbjct: 1617 SPSFSPTSPMLRPGSPTSPSYSPTSPSYSPASPAAARYSPTSPAQQFSPTS-PSYSPTSP 1675
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP + TSP YSP SP
Sbjct: 1676 SYSPASPAFQATSPSYSPASP 1696
Score = 54.7 bits (130), Expect = 3e-06
Identities = 43/99 (43%), Positives = 51/99 (51%), Gaps = 23/99 (23%)
Frame = +3
Query: 144 SPISGT-PYHEGMMSPSYMLSPNLRLSPTNDA--------QFSPYVGGMAFSPTS----- 281
SP + T P+ G SPS + SP D+ QFSP +FSPTS
Sbjct: 1572 SPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSP--SSPSFSPTSPMLRP 1629
Query: 282 ----SPGYSPSSPGYSPSSPG---YSPTSPG--YSPTSP 371
SP YSP+SP YSP+SP YSPTSP +SPTSP
Sbjct: 1630 GSPTSPSYSPTSPSYSPASPAAARYSPTSPAQQFSPTSP 1668
[155][TOP]
>UniRef100_Q84KP6 DNA-directed RNA polymerase n=1 Tax=Cyanidioschyzon merolae
RepID=Q84KP6_CYAME
Length = 1819
Score = 68.2 bits (165), Expect = 3e-10
Identities = 37/63 (58%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SP+Y + +SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 1633 SPAYSPTSPRLVSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYSP 1688
Query: 363 TSP 371
TSP
Sbjct: 1689 TSP 1691
Score = 67.4 bits (163), Expect = 5e-10
Identities = 42/76 (55%), Positives = 46/76 (60%)
Frame = +3
Query: 144 SPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS 323
SP G G SPS SP SPT+ SP A+SPTS P YSP+SP YSP+
Sbjct: 1617 SPAGGGTGTLGAFSPS---SP--AYSPTSPRLVSPT--SPAYSPTS-PAYSPTSPAYSPT 1668
Query: 324 SPGYSPTSPGYSPTSP 371
SP YSPTSP YSPTSP
Sbjct: 1669 SPAYSPTSPAYSPTSP 1684
Score = 63.2 bits (152), Expect = 9e-09
Identities = 42/91 (46%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Frame = +3
Query: 138 GRSPISGT-PYHEGMMSPSYMLSPNLRLSPTNDAQ-----FSPYVGGMAFSPTS------ 281
GR + GT P+ S + +PN SP FSP A+SPTS
Sbjct: 1592 GRYGLGGTSPFASFSASAT---TPNWAPSPAGGGTGTLGAFSP--SSPAYSPTSPRLVSP 1646
Query: 282 -SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1647 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1677
Score = 59.7 bits (143), Expect = 1e-07
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTN-DAQFSPYVGGMAFSPTSSPGYSPSSPG--YSPSSPG--YSPTS 347
SPS SPN+ SP++ + +SP +A+SP+S YSPSSP YSPSSP YSP+S
Sbjct: 1748 SPS---SPNVAYSPSSPNVAYSPSSPNVAYSPSSPVAYSPSSPNVAYSPSSPNVAYSPSS 1804
Query: 348 PGYSPTSP 371
P +SP+SP
Sbjct: 1805 PAFSPSSP 1812
Score = 58.2 bits (139), Expect = 3e-07
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S P SP+Y SP SPT+ A +SP A+SPTS P YSP+SP
Sbjct: 1633 SPAYSPTS--PRLVSPTSPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSP 1684
Query: 309 GYSPSSPGYSPTSP--GYSPTSP 371
YSP+SP YSP+SP YSP+SP
Sbjct: 1685 AYSPTSPAYSPSSPNVAYSPSSP 1707
[156][TOP]
>UniRef100_B4NDK9 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
RepID=B4NDK9_DROWI
Length = 1890
Score = 68.2 bits (165), Expect = 3e-10
Identities = 43/89 (48%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTSS------ 284
G +P S S T SP Y + N + SP+ S Y G A+SP+SS
Sbjct: 1633 GYSPSSSGYSPT-------SPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYTPNS 1685
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1686 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 1714
Score = 66.2 bits (160), Expect = 1e-09
Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Frame = +3
Query: 138 GRSPISG--TPYHEGMMSPSY------MLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGY 293
G SP S +P SPS+ M SP SP++ + ++P ++SPTS P Y
Sbjct: 1640 GYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSS-SNYTP--NSPSYSPTS-PSY 1695
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1696 SPSSPSYSPTSPCYSPTSPSYSPTSP 1721
Score = 59.3 bits (142), Expect = 1e-07
Identities = 56/177 (31%), Positives = 70/177 (39%), Gaps = 54/177 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------------------ 92
NI++GQL +GTG L L+ E + IE+
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSAMMGGAAMFIGGGSTPSMTPPMTP 1508
Query: 93 ----QLPSYMD--GLDFGMTPG--------RSPISG-----TPYHEGMM--SPSYMLSPN 209
P Y G MTPG S SG +P H G SP +SP
Sbjct: 1509 WVNCNTPRYFSPQGHASSMTPGGPSFSPAAASDASGMSPSWSPAHPGSSPSSPGPSMSPY 1568
Query: 210 LRLSPTNDAQFSPYVGGMAFSPTS---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+ +SP S S SP YSPSSP YSP+SP Y+ TSP Y+ T+P
Sbjct: 1569 FPTSPSVSPSYSPTSPNYTASSPSGGASPNYSPSSPNYSPTSPLYAATSPRYASTTP 1625
Score = 59.3 bits (142), Expect = 1e-07
Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +3
Query: 129 MTPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
+TP SP S H SP+Y + ++ SPT+ +SP SP SP Y+P
Sbjct: 1726 VTPSYSPTSPNYSASPHYSPASPAYSQT-GVKYSPTSPT-YSPPSPSYDGSP-GSPQYTP 1782
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1783 GSPQYSPASPKYSPTSPLYSPSSP 1806
Score = 57.8 bits (138), Expect = 4e-07
Identities = 44/103 (42%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPT--NDAQFSPYVGGMAFSPTSSPGYSPS 302
PG SP S P MSP + SP++ SPT N SP G SSP YSP+
Sbjct: 1554 PGSSPSSPGP----SMSPYFPTSPSVSPSYSPTSPNYTASSPSGGASPNYSPSSPNYSPT 1609
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPSS GYSPTSP YSPTS
Sbjct: 1610 SPLYAATSPRYASTTPNFNLQSTGYSPSSSGYSPTSPVYSPTS 1652
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1825 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1876
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1877 AYSPSSP 1883
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1791 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1843
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1844 PTSPTYTPTARNYSPTSPMYSPTAP 1868
[157][TOP]
>UniRef100_A8Q5I6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
RepID=A8Q5I6_MALGO
Length = 1607
Score = 68.2 bits (165), Expect = 3e-10
Identities = 53/151 (35%), Positives = 71/151 (47%), Gaps = 28/151 (18%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD------GLDFGMTPGRSPISGTP 164
N++LGQ+AP+GTG L L+ +MLK+ I + SY + G+D R+P TP
Sbjct: 1234 NVLLGQMAPMGTGSFDLNLDVDMLKDVIVNRDQSYANLWVSKLGMDSDDLGARTPGGMTP 1293
Query: 165 YHEGMMSPSYMLSPNLR--LSPTNDAQFSPYV------GGMAF------SPTSSP----- 287
Y G SPN+ A FSP V GG SP +P
Sbjct: 1294 YDSG--------SPNIDDDFRVQQQASFSPLVQVGGDEGGYGEYLSAGQSPMRTPLGAQS 1345
Query: 288 ---GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
G++P+SPGY P+SP Y+ TSP SP
Sbjct: 1346 PGYGFAPTSPGYVPTSPAYNATSPALGAMSP 1376
Score = 62.8 bits (151), Expect = 1e-08
Identities = 41/82 (50%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-LSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
+P SP S + G SPSY SP+ SP DA + SP +SP YSP+S
Sbjct: 1385 SPAYSPTSPRIF-AGATSPSYSPTSPSYSPSSPVIDASNARSTYTSRMSP-ASPNYSPTS 1442
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 1443 PVYSPTSPAYSPTSPQYSPTSP 1464
Score = 61.6 bits (148), Expect = 3e-08
Identities = 45/92 (48%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
P Y G R SG Y SP Y SP + SPT+ Q+SP +SP
Sbjct: 1457 PQYSPTSPAGPRGRRLGASGPKYSP--TSPQYSPTSP--QYSPTSP-QYSPT--SPQYSP 1509
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1510 TS-PQYSPTSPQYSPTSPQYSPTSPQYSPTSP 1540
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1497 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1550
Query: 360 PTSP 371
PTSP
Sbjct: 1551 PTSP 1554
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1504 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1557
Query: 360 PTSP 371
PTSP
Sbjct: 1558 PTSP 1561
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1511 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1564
Query: 360 PTSP 371
PTSP
Sbjct: 1565 PTSP 1568
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1518 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1571
Query: 360 PTSP 371
PTSP
Sbjct: 1572 PTSP 1575
Score = 59.7 bits (143), Expect = 1e-07
Identities = 42/87 (48%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Frame = +3
Query: 129 MTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPY-----VGGMAFSPTSSPG 290
M+P S T SP+Y SP + SPT+ A P G +SPTS P
Sbjct: 1431 MSPASPNYSPTSPVYSPTSPAYSPTSP--QYSPTSPA--GPRGRRLGASGPKYSPTS-PQ 1485
Query: 291 YSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1486 YSPTSPQYSPTSPQYSPTSPQYSPTSP 1512
Score = 54.7 bits (130), Expect = 3e-06
Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ Q+SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1525 SPQYSPTSP--QYSPTSP-QYSPT--SPQYSPTS-PQYSPTSPQYSPTSPQYSPTSPQYS 1578
Query: 360 PT 365
P+
Sbjct: 1579 PS 1580
[158][TOP]
>UniRef100_B4R347 RNA polymerase II 215kD subunit n=1 Tax=Drosophila simulans
RepID=B4R347_DROSI
Length = 552
Score = 67.8 bits (164), Expect = 4e-10
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
+PG SP + +P G S S + SP SP++ + +SP ++SPTS P YSPS
Sbjct: 307 SPGYSPTAQFQSSPSFAG--SGSNIYSPGNAYSPSS-SNYSP--NSPSYSPTS-PSYSPS 360
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 361 SPSYSPTSPCYSPTSPSYSPTSP 383
Score = 66.6 bits (161), Expect = 8e-10
Identities = 42/89 (47%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTSS------ 284
G +P S S T SP Y + + SP+ S Y G A+SP+SS
Sbjct: 295 GYSPSSSGYSPT-------SPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNS 347
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 348 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 376
Score = 61.6 bits (148), Expect = 3e-08
Identities = 44/101 (43%), Positives = 53/101 (52%), Gaps = 23/101 (22%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP + SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 219 PGSSPSSPGP----SMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 273
Query: 303 SP-------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPSS GYSPTSPGYSPT+
Sbjct: 274 SPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGYSPTA 314
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/93 (40%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEG-MMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFS 272
P Y F +P + Y G SPS SPN +SP ++S
Sbjct: 308 PGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSP--SSPSYS 365
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
PTS P YSP+SP YSP+SP Y+P +P YSPTSP
Sbjct: 366 PTS-PCYSPTSPSYSPTSPNYTPVTPSYSPTSP 397
Score = 58.5 bits (140), Expect = 2e-07
Identities = 41/101 (40%), Positives = 48/101 (47%), Gaps = 23/101 (22%)
Frame = +3
Query: 138 GRSPISGTPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSS 305
G SP S +P H G SP +SP SP+ +SP S +SP YSPSS
Sbjct: 209 GMSP-SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSS 267
Query: 306 PGYSPSSP-------------------GYSPTSPGYSPTSP 371
P YSP+SP GYSP+S GYSPTSP
Sbjct: 268 PNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSP 308
Score = 57.8 bits (138), Expect = 4e-07
Identities = 42/99 (42%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Frame = +3
Query: 132 TPGRSPISG--TPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG-GMAFSPTS------ 281
+P SP S TP ++PSY SPN SP Y G+ +SPTS
Sbjct: 375 SPSYSPTSPNYTP-----VTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPP 429
Query: 282 ---------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP Y+P SP YSP+SP YSPTSP YSP+SP
Sbjct: 430 SPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSP 468
Score = 54.7 bits (130), Expect = 3e-06
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L + M G + G TP +P T
Sbjct: 114 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAAMFIGGGSTPSMTPPM-T 172
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP P + + +P GG +FSP+++ S SP +SP+ PG SP
Sbjct: 173 PW-VNCNTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 223
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 224 SSPGPSMSPYFPASP 238
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 453 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 505
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 506 PTSPTYTPTARNYSPTSPMYSPTAP 530
[159][TOP]
>UniRef100_B4IK28 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
RepID=B4IK28_DROSE
Length = 1887
Score = 67.8 bits (164), Expect = 4e-10
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
+PG SP + +P G S S + SP SP++ + +SP ++SPTS P YSPS
Sbjct: 1642 SPGYSPTAQFQSSPSFAG--SGSNIYSPGNAYSPSS-SNYSP--NSPSYSPTS-PSYSPS 1695
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1696 SPSYSPTSPCYSPTSPSYSPTSP 1718
Score = 66.6 bits (161), Expect = 8e-10
Identities = 42/89 (47%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTSS------ 284
G +P S S T SP Y + + SP+ S Y G A+SP+SS
Sbjct: 1630 GYSPSSSGYSPT-------SPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNS 1682
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1683 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 1711
Score = 61.6 bits (148), Expect = 3e-08
Identities = 44/101 (43%), Positives = 53/101 (52%), Gaps = 23/101 (22%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP + SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPGP----SMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP-------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPSS GYSPTSPGYSPT+
Sbjct: 1609 SPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPGYSPTA 1649
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/93 (40%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEG-MMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFS 272
P Y F +P + Y G SPS SPN +SP ++S
Sbjct: 1643 PGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSP--SSPSYS 1700
Query: 273 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
PTS P YSP+SP YSP+SP Y+P +P YSPTSP
Sbjct: 1701 PTS-PCYSPTSPSYSPTSPNYTPVTPSYSPTSP 1732
Score = 58.5 bits (140), Expect = 2e-07
Identities = 41/101 (40%), Positives = 48/101 (47%), Gaps = 23/101 (22%)
Frame = +3
Query: 138 GRSPISGTPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSS 305
G SP S +P H G SP +SP SP+ +SP S +SP YSPSS
Sbjct: 1544 GMSP-SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSS 1602
Query: 306 PGYSPSSP-------------------GYSPTSPGYSPTSP 371
P YSP+SP GYSP+S GYSPTSP
Sbjct: 1603 PNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1643
Score = 57.8 bits (138), Expect = 4e-07
Identities = 42/99 (42%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Frame = +3
Query: 132 TPGRSPISG--TPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG-GMAFSPTS------ 281
+P SP S TP ++PSY SPN SP Y G+ +SPTS
Sbjct: 1710 SPSYSPTSPNYTP-----VTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPP 1764
Query: 282 ---------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP Y+P SP YSP+SP YSPTSP YSP+SP
Sbjct: 1765 SPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSP 1803
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1822 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1873
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1874 AYSPSSP 1880
Score = 54.7 bits (130), Expect = 3e-06
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L + M G + G TP +P T
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAAMFIGGGSTPSMTPPM-T 1507
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP P + + +P GG +FSP+++ S SP +SP+ PG SP
Sbjct: 1508 PW-VNCNTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 1558
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 1559 SSPGPSMSPYFPASP 1573
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1788 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1840
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1841 PTSPTYTPTARNYSPTSPMYSPTAP 1865
[160][TOP]
>UniRef100_B3MQ29 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
RepID=B3MQ29_DROAN
Length = 1889
Score = 67.8 bits (164), Expect = 4e-10
Identities = 43/89 (48%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTSS------ 284
G +P S S T SP Y + N + SP+ S Y G A+SP+SS
Sbjct: 1632 GYSPSSSGYSPT-------SPVYSPTSNYQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNS 1684
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1685 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 1713
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/86 (50%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Frame = +3
Query: 138 GRSPISG--TPYHEGMMSPSY------MLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGY 293
G SP S +P SPS+ M SP SP++ + +SP ++SPTS P Y
Sbjct: 1639 GYSPTSPVYSPTSNYQSSPSFAGSGSNMYSPGNAYSPSS-SNYSP--NSPSYSPTS-PSY 1694
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1695 SPSSPSYSPTSPCYSPTSPSYSPTSP 1720
Score = 59.7 bits (143), Expect = 1e-07
Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Frame = +3
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYV-----GGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
M SP SP+ N +SP ++SPTS P YSP+SP YSP+SP Y+P
Sbjct: 1666 MYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTS-PCYSPTSPSYSPTSPNYTP 1724
Query: 342 TSPGYSPTSP 371
+P YSPTSP
Sbjct: 1725 VTPSYSPTSP 1734
Score = 59.3 bits (142), Expect = 1e-07
Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +3
Query: 129 MTPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
+TP SP S H SP+Y + ++ SPT+ +SP SP SP Y+P
Sbjct: 1725 VTPSYSPTSPNYSASPHYSPASPAYSQT-GVKYSPTSPT-YSPPSPSYDGSP-GSPQYTP 1781
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1782 GSPQYSPASPKYSPTSPLYSPSSP 1805
Score = 58.5 bits (140), Expect = 2e-07
Identities = 44/103 (42%), Positives = 52/103 (50%), Gaps = 25/103 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP + SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPGP----SMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPSS GYSPTSP YSPTS
Sbjct: 1609 SPLYATTSPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTS 1651
Score = 57.8 bits (138), Expect = 4e-07
Identities = 41/103 (39%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Frame = +3
Query: 138 GRSPISGTPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSS 305
G SP S +P H G SP +SP SP+ +SP S +SP YSPSS
Sbjct: 1544 GMSP-SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSS 1602
Query: 306 PGYSPSSP---------------------GYSPTSPGYSPTSP 371
P YSP+SP GYSP+S GYSPTSP
Sbjct: 1603 PNYSPTSPLYATTSPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1645
Score = 55.8 bits (133), Expect = 1e-06
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P T
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGAAMFIGGGSTPSMTPPM-T 1507
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP P + + +P GG +FSP+++ S SP +SP+ PG SP
Sbjct: 1508 PW-VNCNTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 1558
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 1559 SSPGPSMSPYFPASP 1573
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1824 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1875
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1876 AYSPSSP 1882
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1790 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1842
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1843 PTSPTYTPTARNYSPTSPMYSPTAP 1867
[161][TOP]
>UniRef100_Q2HDK0 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
RepID=Q2HDK0_CHAGB
Length = 1756
Score = 67.8 bits (164), Expect = 4e-10
Identities = 56/177 (31%), Positives = 75/177 (42%), Gaps = 54/177 (30%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTP------GRSPISGTP 164
N+MLGQ+AP+GTG + L+ +ML+ I D G+ P G+ + TP
Sbjct: 1452 NVMLGQMAPMGTGHFDVLLDPKMLETVIS-------DNSRMGLMPNMTIKGGQLEGAATP 1504
Query: 165 Y----------HEGMMSPS---------------------------------YMLSPNLR 215
Y H G SP+ Y SP
Sbjct: 1505 YDTGSPMADNGHLGSYSPTMGNFSPIQGAGSDSPNGFGTEYGGGFGSSTVNPYATSPR-A 1563
Query: 216 LSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP-----GYSPSSPGYSPTSPGYSPTSP 371
SP + + SP+ G +SPTS GYSP+SP G SSP +SP+SP +SPTSP
Sbjct: 1564 TSPFSTSPTSPFSYGGGYSPTSPAGYSPTSPLLDAGGRYASSPQFSPSSPSFSPTSP 1620
Score = 56.6 bits (135), Expect = 8e-07
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGY--------SPSSPGY 335
SPSY SPNL + + + SP +SPTS YSP+SP + SP+SPGY
Sbjct: 1670 SPSYSPASPNLHATSPSYSPASP-----TWSPTSPDAYSPTSPSFHRSPGQQMSPTSPGY 1724
Query: 336 SPTSPGYSPTSP 371
SPTSP +SP +P
Sbjct: 1725 SPTSPSFSPRTP 1736
Score = 56.2 bits (134), Expect = 1e-06
Identities = 37/80 (46%), Positives = 42/80 (52%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPG 311
+P P S T + SPSY SP SP +SP SPTS P YSP+SP
Sbjct: 1619 SPMLRPGSPTSPNYSPTSPSY--SP---ASPAATRHYSPTSPQQFNSPTS-PSYSPTSPS 1672
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP TSP YSP SP
Sbjct: 1673 YSPASPNLHATSPSYSPASP 1692
[162][TOP]
>UniRef100_O04142 DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra yezoensis
RepID=O04142_PORYE
Length = 1685
Score = 67.4 bits (163), Expect = 5e-10
Identities = 53/154 (34%), Positives = 72/154 (46%), Gaps = 31/154 (20%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPS----------YMDGLDFGMTPGRSPI 152
+IMLGQLAP+GTG L+LND L +A+E + + M + G TPGR
Sbjct: 1409 SIMLGQLAPLGTGSFGLFLNDAALTDAVEPETDAAASARIARSPAMPESERGYTPGREG- 1467
Query: 153 SGTP--YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSP-TSSPGYSP-------- 299
TP + M+P+Y SP +P A Y G FSP ++ +SP
Sbjct: 1468 QRTPGRAFDAAMTPTYAYSPARARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAA 1527
Query: 300 -------SSPGYSPS---SPGYSPTSPGYSPTSP 371
+PG SP+ +P SP SPGY+ SP
Sbjct: 1528 GRATPGRMTPGRSPAGRFTPRMSPASPGYAAMSP 1561
[163][TOP]
>UniRef100_B4MAN9 DNA-directed RNA polymerase n=1 Tax=Drosophila virilis
RepID=B4MAN9_DROVI
Length = 1889
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/89 (48%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTSS------ 284
G +P S S T SP Y + N + SP+ S Y G A+SP+SS
Sbjct: 1632 GYSPSSSGYSPT-------SPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSSNS 1684
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP SP YSPSSP YSPTSP YSPTSP
Sbjct: 1685 PSYSPMSPSYSPSSPSYSPTSPCYSPTSP 1713
Score = 63.2 bits (152), Expect = 9e-09
Identities = 41/86 (47%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Frame = +3
Query: 138 GRSPISG--TPYHEGMMSPSY------MLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGY 293
G SP S +P SPS+ M SP SP++ S ++SP SP Y
Sbjct: 1639 GYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSS---NSPSYSP-MSPSY 1694
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1695 SPSSPSYSPTSPCYSPTSPSYSPTSP 1720
Score = 61.6 bits (148), Expect = 3e-08
Identities = 61/197 (30%), Positives = 75/197 (38%), Gaps = 74/197 (37%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL------------------------------ 92
NI++GQL +GTG L L+ E + IE+
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGAAIFMGGGSTPSMTPPMTP 1508
Query: 93 ----QLPSYMD--GLDFGMTPG--------RSPISG-----TPYHEGMM--SPSYMLSPN 209
P Y G GMTPG S SG +P H G SP +SP+
Sbjct: 1509 WVNCHTPRYFSPSGHVSGMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPH 1568
Query: 210 LRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSSPGYSPSSP------------------ 329
SP+ +SP S +SP YSPSSP YSP+SP
Sbjct: 1569 FSTSPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYTATSLRYASATPNFNP 1628
Query: 330 ---GYSPTSPGYSPTSP 371
GYSP+S GYSPTSP
Sbjct: 1629 QSTGYSPSSSGYSPTSP 1645
Score = 58.9 bits (141), Expect = 2e-07
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
TP SP S H SP+Y + ++ SPT+ +SP SP SP Y+P
Sbjct: 1726 TPSYSPTSPNYSASPHYSPASPAYSQT-GVKYSPTSPT-YSPPSPSYDGSP-GSPQYTPG 1782
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1783 SPQYSPTSPKYSPTSPLYSPSSP 1805
Score = 55.5 bits (132), Expect = 2e-06
Identities = 36/88 (40%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSY-----MLSPNLRLSPTND---AQFSPYVGGMAFSPTSSP 287
TPG S T SP Y SP+ + SPT A Y M+ SS
Sbjct: 1780 TPGSPQYSPTSPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSST 1839
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1840 KYSPTSPTYTPTARNYSPTSPMYSPTAP 1867
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1824 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1875
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1876 AYSPSSP 1882
[164][TOP]
>UniRef100_B0DB45 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0DB45_LACBS
Length = 1742
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Frame = +3
Query: 99 PSYMDGLDFGMTP---GRSPISGTPYHE----GMMSPSYM-LSPNLRLSPTNDAQFSPYV 254
PS++ FG G SP + +PY++ SP+Y SP L L+ + SP
Sbjct: 1564 PSFVPQSPFGGATSPFGTSPYAASPYYDPSARNPTSPTYSPTSPALNLTSPGYSPTSP-- 1621
Query: 255 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SPTS P +SP+SP YSP SP +SPTSP YSPTSP
Sbjct: 1622 ---RYSPTS-PSFSPTSPRYSPQSPSFSPTSPRYSPTSP 1656
Score = 65.5 bits (158), Expect = 2e-09
Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 51/174 (29%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAI---ELQLPSYMDG-LDFGMTPGRSPISGTPY- 167
N+M GQ+AP+GTG + L+ +MLK+AI L + S + +D GMTPG+ ++ TPY
Sbjct: 1438 NVMFGQMAPMGTGAFEVALDIDMLKDAIVDHRLPVQSMLAAQIDGGMTPGQ--VAMTPYD 1495
Query: 168 ------HEGMMS---PSYMLSP---------------NLRLSPTNDAQFSPYVGGMAFSP 275
H+ + S SP SP SP GG +SP
Sbjct: 1496 TNSPVWHDNLFKGDPASASFSPLASNGGEDAANFQYLGFGQSPLGAGGMSP--GGPGYSP 1553
Query: 276 TSSPGYSPSSPGYSPSSP----------------------GYSPTSPGYSPTSP 371
+S YSP+SP + P SP +PTSP YSPTSP
Sbjct: 1554 SSPNVYSPTSPSFVPQSPFGGATSPFGTSPYAASPYYDPSARNPTSPTYSPTSP 1607
[165][TOP]
>UniRef100_Q9XZU9 DNA-directed RNA polymerase n=1 Tax=Drosophila subobscura
RepID=Q9XZU9_DROSU
Length = 1889
Score = 67.0 bits (162), Expect = 6e-10
Identities = 41/81 (50%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMM-SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S P S S M SP SP++ +SP ++SPTS P YSPSSP
Sbjct: 1644 SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSS-TNYSP--NSPSYSPTS-PSYSPSSP 1699
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSPTSP
Sbjct: 1700 SYSPTSPCYSPSSPSYSPTSP 1720
Score = 65.5 bits (158), Expect = 2e-09
Identities = 42/89 (47%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTS------S 284
G +P S S T SP Y + N SP+ S Y G A+SP+S S
Sbjct: 1632 GYSPSASGYSPT-------SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNS 1684
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSP+SP
Sbjct: 1685 PSYSPTSPSYSPSSPSYSPTSPCYSPSSP 1713
Score = 63.5 bits (153), Expect = 7e-09
Identities = 57/165 (34%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSP---- 149
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGTAMFIGGGSTPSMTPPMTP 1508
Query: 150 --------ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQ-----FSPYVGGMA-------- 266
P H M+P P+ S +DA +SP G +
Sbjct: 1509 WVNCNTPRYFSPPGHVSAMTPG---GPSFSPSAASDASGMSPSWSPAHPGSSPSSPAPSM 1565
Query: 267 -----FSPTSSPGYSPSSPGYSPSSPG-----YSPTSPGYSPTSP 371
SP+ SP YSP+SP Y+ SSPG YSP+SP YSPTSP
Sbjct: 1566 SPFYPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSP 1610
Score = 59.7 bits (143), Expect = 1e-07
Identities = 44/103 (42%), Positives = 52/103 (50%), Gaps = 25/103 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP Y SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPAP----SMSPFYPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPS+ GYSPTSP YSPTS
Sbjct: 1609 SPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS 1651
Score = 58.2 bits (139), Expect = 3e-07
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
TP SP S H SP+Y + + SPT+ +SP SP SP Y+P
Sbjct: 1726 TPSYSPTSPNYSASPHYSPASPAYSQT-GAKYSPTSPT-YSPPSPSYDGSP-GSPQYTPG 1782
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1783 SPQYSPASPKYSPTSPLYSPSSP 1805
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1824 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1875
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1876 AYSPSSP 1882
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1790 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1842
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1843 PTSPTYTPTARNYSPTSPMYSPTAP 1867
[166][TOP]
>UniRef100_Q9XZS2 DNA-directed RNA polymerase n=1 Tax=Drosophila madeirensis
RepID=Q9XZS2_DROMD
Length = 1889
Score = 67.0 bits (162), Expect = 6e-10
Identities = 41/81 (50%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMM-SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S P S S M SP SP++ +SP ++SPTS P YSPSSP
Sbjct: 1644 SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSS-TNYSP--NSPSYSPTS-PSYSPSSP 1699
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSPTSP
Sbjct: 1700 SYSPTSPCYSPSSPSYSPTSP 1720
Score = 65.5 bits (158), Expect = 2e-09
Identities = 42/89 (47%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTS------S 284
G +P S S T SP Y + N SP+ S Y G A+SP+S S
Sbjct: 1632 GYSPSASGYSPT-------SPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNS 1684
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSP+SP
Sbjct: 1685 PSYSPTSPSYSPSSPSYSPTSPCYSPSSP 1713
Score = 63.5 bits (153), Expect = 7e-09
Identities = 57/165 (34%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSP---- 149
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGTAMFIGGGSTPSMTPPMTP 1508
Query: 150 --------ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQ-----FSPYVGGMA-------- 266
P H M+P P+ S +DA +SP G +
Sbjct: 1509 WVNCNTPRYFSPPGHVSAMTPG---GPSFSPSAASDASGMSPSWSPAHPGSSPSSPAPSM 1565
Query: 267 -----FSPTSSPGYSPSSPGYSPSSPG-----YSPTSPGYSPTSP 371
SP+ SP YSP+SP Y+ SSPG YSP+SP YSPTSP
Sbjct: 1566 SPFYPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSP 1610
Score = 59.7 bits (143), Expect = 1e-07
Identities = 44/103 (42%), Positives = 52/103 (50%), Gaps = 25/103 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP Y SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPAP----SMSPFYPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPS+ GYSPTSP YSPTS
Sbjct: 1609 SPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS 1651
Score = 58.2 bits (139), Expect = 3e-07
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
TP SP S H SP+Y + + SPT+ +SP SP SP Y+P
Sbjct: 1726 TPSYSPTSPNYSASPHYSPASPAYSQT-GAKYSPTSPT-YSPPSPSYDGSP-GSPQYTPG 1782
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1783 SPQYSPASPKYSPTSPLYSPSSP 1805
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1824 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1875
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1876 AYSPSSP 1882
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1790 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1842
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1843 PTSPTYTPTARNYSPTSPMYSPTAP 1867
[167][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
RepID=Q0D054_ASPTN
Length = 1742
Score = 67.0 bits (162), Expect = 6e-10
Identities = 54/175 (30%), Positives = 71/175 (40%), Gaps = 52/175 (29%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKN------------AIELQLPSYMDGL----DFGMT 134
N++LGQ+AP GTGE +YL+ +L AI + DG D G
Sbjct: 1454 NLILGQMAPAGTGEFDIYLDQNLLNTVVSNNARYGVMGAIGAKDAIISDGAATQYDTGSP 1513
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP---YVGGMAFSPTSSPGYSP-- 299
S GTP + SP SP ++ P + GG + +PTS GYSP
Sbjct: 1514 MQESAYIGTPDPDSNFSPIRQAGAE---SPGGFTEYQPTAGFGGGFSPAPTSPLGYSPGS 1570
Query: 300 -------------------------------SSPGYSPSSPGYSPTSPGYSPTSP 371
+SPG+SP+SP + PTSP YSPTSP
Sbjct: 1571 PFSGGATSPSYSPSSSYSPTSPGMGITSPRMTSPGFSPASPAFGPTSPAYSPTSP 1625
Score = 66.6 bits (161), Expect = 8e-10
Identities = 45/103 (43%), Positives = 53/103 (51%), Gaps = 25/103 (24%)
Frame = +3
Query: 138 GRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQ-----------FSPYVGGM-----AF 269
G SP G+P+ G SPSY SP+ SPT+ FSP A+
Sbjct: 1565 GYSP--GSPFSGGATSPSY--SPSSSYSPTSPGMGITSPRMTSPGFSPASPAFGPTSPAY 1620
Query: 270 SPTS---------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPTS SP YSP+SPG+SP+SP YSPTSP SP SP
Sbjct: 1621 SPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPNLSPASP 1663
Score = 62.8 bits (151), Expect = 1e-08
Identities = 40/81 (49%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S G SP+Y SP + +SP G FSPTS P YSP+SP
Sbjct: 1603 SPGFSPASPA---FGPTSPAYSPTSPAYGQASPTSPSYSPTSPG--FSPTS-PNYSPTSP 1656
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
SP+SP +SPTSP YSPTSP
Sbjct: 1657 NLSPASPVFSPTSPSYSPTSP 1677
Score = 57.4 bits (137), Expect = 5e-07
Identities = 42/96 (43%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Frame = +3
Query: 123 FGMT-PGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMA--FSPTSSPG 290
FG T P SP S SPSY SP + N + SP + + FSPTS P
Sbjct: 1613 FGPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPNLSPASPVFSPTS-PS 1671
Query: 291 YSPSSPGY---------SPSSPGYSPTSPGYSPTSP 371
YSP+SP SP+SP Y+PTSPG+SPTSP
Sbjct: 1672 YSPTSPALGAGRNMSPTSPTSPKYTPTSPGWSPTSP 1707
Score = 55.1 bits (131), Expect = 2e-06
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 11/74 (14%)
Frame = +3
Query: 183 SPSYM-----LSPNLRLSPTNDA--QFSPYVGGMAFSPTSSPGYSPSSP--GYSPSSPG- 332
SPSY L +SPT+ +++P G +SPTS YSP+SP G SP+SPG
Sbjct: 1669 SPSYSPTSPALGAGRNMSPTSPTSPKYTPTSPG--WSPTSPQSYSPTSPNIGGSPTSPGG 1726
Query: 333 -YSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 1727 AYSPTSPTYSPTSP 1740
[168][TOP]
>UniRef100_C4Y5N3 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4Y5N3_CLAL4
Length = 281
Score = 67.0 bits (162), Expect = 6e-10
Identities = 44/85 (51%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Frame = +3
Query: 129 MTPGRSPIS---GTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
MT SP S +P G SP Y SP SPT+ + +SP ++SPTS P YS
Sbjct: 52 MTSPTSPFSYGGASPAFGGATSPGYGGTSPTY--SPTSPS-YSPT--SPSYSPTS-PSYS 105
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP YSP+SP YSPTSP YSPTSP
Sbjct: 106 PTSPSYSPTSPSYSPTSPSYSPTSP 130
Score = 65.5 bits (158), Expect = 2e-09
Identities = 43/83 (51%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
G +P SP S + SPSY SP+ SPT+ + +SP ++SPTS P YSP+
Sbjct: 78 GTSPTYSPTSPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPT 128
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 129 SPSYSPTSPSYSPTSPSYSPTSP 151
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 108 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 161
Query: 360 PTSP 371
PTSP
Sbjct: 162 PTSP 165
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 115 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 168
Query: 360 PTSP 371
PTSP
Sbjct: 169 PTSP 172
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 122 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 175
Query: 360 PTSP 371
PTSP
Sbjct: 176 PTSP 179
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 129 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 182
Query: 360 PTSP 371
PTSP
Sbjct: 183 PTSP 186
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 136 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 189
Query: 360 PTSP 371
PTSP
Sbjct: 190 PTSP 193
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 143 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 196
Query: 360 PTSP 371
PTSP
Sbjct: 197 PTSP 200
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 150 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 203
Query: 360 PTSP 371
PTSP
Sbjct: 204 PTSP 207
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 157 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 210
Query: 360 PTSP 371
PTSP
Sbjct: 211 PTSP 214
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 164 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 217
Query: 360 PTSP 371
PTSP
Sbjct: 218 PTSP 221
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 171 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 224
Query: 360 PTSP 371
PTSP
Sbjct: 225 PTSP 228
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 178 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 231
Query: 360 PTSP 371
PTSP
Sbjct: 232 PTSP 235
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 185 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 238
Query: 360 PTSP 371
PTSP
Sbjct: 239 PTSP 242
Score = 64.3 bits (155), Expect = 4e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 192 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 245
Query: 360 PTSP 371
PTSP
Sbjct: 246 PTSP 249
Score = 63.5 bits (153), Expect = 7e-09
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 199 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPQYS 252
Query: 360 PTSP 371
PTSP
Sbjct: 253 PTSP 256
Score = 60.1 bits (144), Expect = 7e-08
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 206 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPQYSPTSPQYS 259
Query: 360 PTSP 371
P SP
Sbjct: 260 PGSP 263
Score = 57.8 bits (138), Expect = 4e-07
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSP SP YS
Sbjct: 213 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPQYSPTSPQYSPGSPSYS 266
Query: 360 PTSP 371
P SP
Sbjct: 267 PRSP 270
[169][TOP]
>UniRef100_UPI000179348F PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179348F
Length = 1862
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/83 (51%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
+P SP S + H SPSY SP+ SPT+ + +SP ++SPTS P YSP+
Sbjct: 1634 SPSYSPTSPSYSHTSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPT 1687
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1688 SPSYSPTSPSYSPTSPSYSPTSP 1710
Score = 65.9 bits (159), Expect = 1e-09
Identities = 44/105 (41%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Frame = +3
Query: 129 MTPGR-SPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQF--SPYVGGMAFSPTS----- 281
MTP SP S +P Y +SPN SPT+ + SP ++SPTS
Sbjct: 1599 MTPTNYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSP 1658
Query: 282 ---------------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1659 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1703
Score = 65.9 bits (159), Expect = 1e-09
Identities = 45/92 (48%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
PSY +P SP S + SPSY SP+ SPT+ + +SP ++SP
Sbjct: 1642 PSYSHTSYSPTSPSYSPTSPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSP 1693
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1694 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1724
Score = 56.2 bits (134), Expect = 1e-06
Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSP+SP Y+
Sbjct: 1688 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPSSPQYA 1741
Query: 360 PTSP 371
+SP
Sbjct: 1742 ASSP 1745
Score = 55.1 bits (131), Expect = 2e-06
Identities = 43/105 (40%), Positives = 52/105 (49%), Gaps = 29/105 (27%)
Frame = +3
Query: 144 SPISGTP-YHEGMMSPSYMLSPNLR-----LSPTNDA------QFSPYVGG----MAFSP 275
S SGT Y SPS +SP SP+N + Q +P GG ++SP
Sbjct: 1750 SATSGTSNYKYSPTSPSLAVSPTYSPTSPMYSPSNASYSPSSLQHTPNAGGTQYNQSYSP 1809
Query: 276 TS-----------SPGYSPSSPGYSPS--SPGYSPTSPGYSPTSP 371
+S SP YSP+SP YSP SP YSP+SP YSPTSP
Sbjct: 1810 SSPVYSPTNFSMASPRYSPTSPTYSPGVGSPHYSPSSPSYSPTSP 1854
[170][TOP]
>UniRef100_UPI000179338A PREDICTED: similar to DNA-directed RNA polymerase II subunit RPB1
(RNA polymerase II subunit B1) (DNA-directed RNA
polymerase III largest subunit) n=1 Tax=Acyrthosiphon
pisum RepID=UPI000179338A
Length = 1862
Score = 66.6 bits (161), Expect = 8e-10
Identities = 45/119 (37%), Positives = 58/119 (48%), Gaps = 29/119 (24%)
Frame = +3
Query: 102 SYMDGLDFG-MTPGRSPISGTPYHEGMMS-----PSYM-LSPNLRLSPTNDAQF--SPYV 254
+Y FG M+P +P + +P + P Y +SPN SPT+ + SP
Sbjct: 1585 NYPSSPQFGSMSPSMTPTNYSPTSPQYSATQQNTPKYSSMSPNYNYSPTSPSYSPTSPSY 1644
Query: 255 GGMAFSPTS--------------------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
++SPTS SP YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1645 SHTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1703
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/83 (51%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
+P SP S + H SPSY SP+ SPT+ + +SP ++SPTS P YSP+
Sbjct: 1634 SPSYSPTSPSYSHTSYSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPT 1687
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSPTSP
Sbjct: 1688 SPSYSPTSPSYSPTSPSYSPTSP 1710
Score = 65.9 bits (159), Expect = 1e-09
Identities = 45/92 (48%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSP 275
PSY +P SP S + SPSY SP+ SPT+ + +SP ++SP
Sbjct: 1642 PSYSHTSYSPTSPSYSPTSPS---YSPTSPSYSPTSPSY--SPTSPS-YSPT--SPSYSP 1693
Query: 276 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
TS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1694 TS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1724
Score = 56.2 bits (134), Expect = 1e-06
Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ SPT+ + +SP ++SPTS P YSP+SP YSP+SP YSP+SP Y+
Sbjct: 1688 SPSYSPTSPSY--SPTSPS-YSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPSSPQYT 1741
Query: 360 PTSP 371
+SP
Sbjct: 1742 ASSP 1745
Score = 55.5 bits (132), Expect = 2e-06
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Frame = +3
Query: 129 MTPGRSPISG--TPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS----SPG 290
++P SP S +P + S +PN ++ N + +SP +SPT+ SP
Sbjct: 1769 VSPTYSPTSPMYSPSNASYSPSSVQHTPNAGVTQYNQS-YSP--SSPVYSPTNFSLASPR 1825
Query: 291 YSPSSPGYSPS--SPGYSPTSPGYSPTSP 371
YSP+SP YSP SP YSP+SP YSPTSP
Sbjct: 1826 YSPTSPTYSPGVGSPNYSPSSPSYSPTSP 1854
[171][TOP]
>UniRef100_C9SR21 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Verticillium
albo-atrum VaMs.102 RepID=C9SR21_9PEZI
Length = 1756
Score = 66.6 bits (161), Expect = 8e-10
Identities = 57/157 (36%), Positives = 73/157 (46%), Gaps = 34/157 (21%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISG-------T 161
N+MLGQ+AP+GTG + L+ +ML+ I D G+ PG P+ G T
Sbjct: 1447 NVMLGQMAPMGTGHFEVLLDPKMLETVIS-------DNSRMGLVPG-MPVKGGEMGGAAT 1498
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--------SSPGYSPSSPG-- 311
PY G S LS L +N+ FSP VG + T + G+ +SPG
Sbjct: 1499 PYDTGSPLDSGYLS--LGSPSSNEGNFSPIVGAGSDDNTGFGTEYGGTYGGFGGASPGRA 1556
Query: 312 -------YSPSSP--------GYSPTSP--GYSPTSP 371
SP+SP GYSPTSP GYSPTSP
Sbjct: 1557 GATSPFTTSPTSPFSSFAGAGGYSPTSPGGGYSPTSP 1593
Score = 54.3 bits (129), Expect = 4e-06
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Frame = +3
Query: 132 TPGRSPISGT-PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S T P H SP+ SP +SP + + +SP YSP+SP
Sbjct: 1635 SPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPSYSPTSPNLHGAGPTSPSYSPASP 1694
Query: 309 GYSPSSPGY----------------SPTSPGYSPTSP 371
+SP+SP + SPTSP YSPTSP
Sbjct: 1695 SWSPTSPEHSYSPTSPSFQRPAMQQSPTSPNYSPTSP 1731
[172][TOP]
>UniRef100_B6QAY2 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QAY2_PENMQ
Length = 1744
Score = 66.6 bits (161), Expect = 8e-10
Identities = 50/140 (35%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIE----LQLPSYMDGLDFGMTPG-------RSP 149
N++LGQLAP GTGE +YL+ +L + + L + D + G SP
Sbjct: 1454 NLILGQLAPAGTGEFDVYLDQSLLNTVVSSNTGIGLMGGLGAKDAMINDGAATQYDNNSP 1513
Query: 150 ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPY-----VGGMAFSPTSSPGYSPSSP-G 311
+ Y G P SP + F+ Y +GG + +P S GYSP+SP
Sbjct: 1514 MMENGY-IGTPDPDAKFSPIRQAGAETPGGFTAYQPSGGLGGFSPAPQSPGGYSPTSPFN 1572
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
SP SPGYSP+S YSP+SP
Sbjct: 1573 TSPVSPGYSPSS-SYSPSSP 1591
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SP+Y SP+ + + + + SP FSP SSP YSPSSP
Sbjct: 1604 SPGFSPQSPA---FAITSPAYSPTSPSFQATSPSYSPTSP-----RFSP-SSPNYSPSSP 1654
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
+SP+SP +SP+SP YSPTSP
Sbjct: 1655 NFSPASPAFSPSSPTYSPTSP 1675
Score = 55.5 bits (132), Expect = 2e-06
Identities = 36/90 (40%), Positives = 45/90 (50%), Gaps = 27/90 (30%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS--SPGYSPSSPGYSPSSP-------- 329
SP++ SP S + SP +GG FSP+S SP YSP+SPG+SP+SP
Sbjct: 1653 SPNFSPASPAFSPSSPTYSPTSPAIGGRQFSPSSPSSPKYSPASPGWSPTSPEIYSPTSP 1712
Query: 330 ----------------GYSPTSPGYSPTSP 371
YSPTSP Y+PTSP
Sbjct: 1713 NIHGSPTSPARGATSPSYSPTSPQYNPTSP 1742
[173][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
Length = 1748
Score = 66.2 bits (160), Expect = 1e-09
Identities = 59/170 (34%), Positives = 71/170 (41%), Gaps = 47/170 (27%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKN------------AIELQLPSYMDGL----DFGMT 134
N++LGQ+AP GTGE +YL+ ML AI + DG D G
Sbjct: 1453 NLILGQMAPAGTGEFDIYLDQNMLNTVVSNNARFGVMGAIGAKDAIISDGASTQYDTGSP 1512
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVG-GMAFSP--TSSPGYSPSS 305
+ GTP E SP SP ++ P G G FSP TS GYSPSS
Sbjct: 1513 MQDNAYIGTPDPESNFSPIRQAGAE---SPGGFTEYQPTGGFGGGFSPAATSPAGYSPSS 1569
Query: 306 P--------GYSPSS--------------------PGYSPTSPGYSPTSP 371
P GYSPSS PG+SP SP ++PTSP
Sbjct: 1570 PFSANPTSPGYSPSSSYSPTSPGMAMTSPRFSMTSPGFSPASPSFAPTSP 1619
Score = 65.5 bits (158), Expect = 2e-09
Identities = 43/93 (46%), Positives = 53/93 (56%), Gaps = 13/93 (13%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSY-MLSPNLRLSPTNDAQFSPYVGGMAFSPTS------ 281
+PG SP S +P GM SP + M SP + + A SP A+SPTS
Sbjct: 1577 SPGYSPSSSYSPTSPGMAMTSPRFSMTSPGFSPASPSFAPTSP-----AYSPTSPAYGQA 1631
Query: 282 ---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1632 SPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASP 1664
Score = 64.7 bits (156), Expect = 3e-09
Identities = 42/85 (49%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = +3
Query: 123 FGMT-PGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
F MT PG SP S + SP+Y SP + +SP G FSPTS P YS
Sbjct: 1600 FSMTSPGFSPASPS---FAPTSPAYSPTSPAYGQASPTSPSYSPTSPG--FSPTS-PNYS 1653
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP +SP+SP +SPTSP YSPTSP
Sbjct: 1654 PTSPSFSPASPAFSPTSPSYSPTSP 1678
Score = 54.3 bits (129), Expect = 4e-06
Identities = 41/108 (37%), Positives = 54/108 (50%), Gaps = 28/108 (25%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMA--FSPTS--SPGYS 296
+PG SP S + SPS+ SP + + + SP +GG A SPTS SP Y+
Sbjct: 1642 SPGFSPTSP---NYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAARHLSPTSPTSPKYT 1698
Query: 297 PSSPGYSPSSP-----------------------GYSPTSPGYSPTSP 371
P+SPG+SP+SP GYSPTSP +SP+SP
Sbjct: 1699 PTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSPAFSPSSP 1746
[174][TOP]
>UniRef100_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
RepID=B6AG69_9CRYT
Length = 1927
Score = 65.9 bits (159), Expect = 1e-09
Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMA--FSPTS------S 284
+PG P+S + SP+Y SPN + N + SP+ + +SPTS S
Sbjct: 1689 SPGVEPLSP---NYSPTSPNYSPTSPNYSPTSPNYSPTSPHYSPTSPHYSPTSPHYSPTS 1745
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1746 PHYSPTSPNYSPTSPHYSPTSPNYSPTSP 1774
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/81 (48%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T H SP Y SP+ + N + SP+ +SPTS P YSP+SP
Sbjct: 1721 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPNYSPTSPH-----YSPTS-PNYSPTSP 1774
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1775 HYSPTSPNYSPTSPHYSPTSP 1795
Score = 63.9 bits (154), Expect = 5e-09
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T H SP+Y SP+ + N + SP+ +SPTS P YSP+SP
Sbjct: 1735 SPTSPHYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPTSPH-----YSPTS-PNYSPTSP 1788
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSPTSP
Sbjct: 1789 HYSPTSPNYSPSSPHYSPTSP 1809
Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S H SP+Y SP+ + N + SP+ +SPTS P YSPSSP
Sbjct: 1752 SPNYSPTSP---HYSPTSPNYSPTSPHYSPTSPNYSPTSPH-----YSPTS-PNYSPSSP 1802
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP Y+P SP YSP+SP
Sbjct: 1803 HYSPTSPSYNPASPNYSPSSP 1823
Score = 62.0 bits (149), Expect = 2e-08
Identities = 42/81 (51%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S H SP Y SP+ SPT+ +SP +SPTS P YSP+SP
Sbjct: 1717 SPNYSPTSP---HYSPTSPHYSPTSPHY--SPTSP-HYSPTSPN--YSPTS-PHYSPTSP 1767
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP YSPTSP
Sbjct: 1768 NYSPTSPHYSPTSPNYSPTSP 1788
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S H SP+Y SP+ + N + SP+ +SPTS P Y+P+SP
Sbjct: 1766 SPNYSPTSP---HYSPTSPNYSPTSPHYSPTSPNYSPSSPH-----YSPTS-PSYNPASP 1816
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSPSSP Y+P SP YSP+SP
Sbjct: 1817 NYSPSSPHYNPASPNYSPSSP 1837
Score = 60.1 bits (144), Expect = 7e-08
Identities = 35/64 (54%), Positives = 41/64 (64%)
Frame = +3
Query: 180 MSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
MSP+ SP + N + SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 1685 MSPT---SPGVEPLSPNYSPTSPN-----YSPTS-PNYSPTSPNYSPTSPHYSPTSPHYS 1735
Query: 360 PTSP 371
PTSP
Sbjct: 1736 PTSP 1739
Score = 58.9 bits (141), Expect = 2e-07
Identities = 39/81 (48%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S H SPSY SPN S + SP +SP SSP Y+P+ P
Sbjct: 1794 SPNYSPSSP---HYSPTSPSYNPASPNYSPSSPHYNPASPN-----YSP-SSPQYNPALP 1844
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSPSSP Y+PTSP YSP+SP
Sbjct: 1845 NYSPSSPQYNPTSPNYSPSSP 1865
Score = 55.1 bits (131), Expect = 2e-06
Identities = 26/43 (60%), Positives = 28/43 (65%)
Frame = +3
Query: 243 SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP G +SSP SP+SPG P SP YSPTSP YSPTSP
Sbjct: 1669 SPVYSGDKDGDSSSPFMSPTSPGVEPLSPNYSPTSPNYSPTSP 1711
[175][TOP]
>UniRef100_A9UNH9 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
RepID=A9UNH9_DROME
Length = 1887
Score = 65.9 bits (159), Expect = 1e-09
Identities = 42/85 (49%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Frame = +3
Query: 138 GRSPISG--TPYHEGMMSPSYMLSPNLRLSPTN-----DAQFSPYVGGMAFSPTSSPGYS 296
G SP S +P + SPS+ S + SP N + +SP ++SPTS P YS
Sbjct: 1637 GYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSP--NSPSYSPTS-PSYS 1693
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
PSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1694 PSSPSYSPTSPCYSPTSPSYSPTSP 1718
Score = 65.5 bits (158), Expect = 2e-09
Identities = 42/89 (47%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTSS------ 284
G +P S S T SP Y + + SP+ S Y G A+SP+SS
Sbjct: 1630 GYSPSSSGYSPT-------SPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNS 1682
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1683 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 1711
Score = 60.5 bits (145), Expect = 6e-08
Identities = 36/91 (39%), Positives = 47/91 (51%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT 278
P Y + F +P + Y SP SP+ N +SP ++SP
Sbjct: 1643 PVYSPTVQFQSSPSFAGSGSNIY-----SPGNAYSPSSSNYSPNSPSYSPT--SPSYSP- 1694
Query: 279 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SSP YSP+SP YSP+SP YSPTSP Y+P +P
Sbjct: 1695 SSPSYSPTSPCYSPTSPSYSPTSPNYTPVTP 1725
Score = 58.5 bits (140), Expect = 2e-07
Identities = 41/101 (40%), Positives = 48/101 (47%), Gaps = 23/101 (22%)
Frame = +3
Query: 138 GRSPISGTPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSS 305
G SP S +P H G SP +SP SP+ +SP S +SP YSPSS
Sbjct: 1544 GMSP-SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSS 1602
Query: 306 PGYSPSSP-------------------GYSPTSPGYSPTSP 371
P YSP+SP GYSP+S GYSPTSP
Sbjct: 1603 PNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1643
Score = 57.8 bits (138), Expect = 4e-07
Identities = 43/100 (43%), Positives = 51/100 (51%), Gaps = 23/100 (23%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP + SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPGP----SMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP-------------------GYSPSSPGYSPTSPGYSPT 365
SP GYSPSS GYSPTSP YSPT
Sbjct: 1609 SPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPT 1648
Score = 57.8 bits (138), Expect = 4e-07
Identities = 42/99 (42%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Frame = +3
Query: 132 TPGRSPISG--TPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG-GMAFSPTS------ 281
+P SP S TP ++PSY SPN SP Y G+ +SPTS
Sbjct: 1710 SPSYSPTSPNYTP-----VTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPP 1764
Query: 282 ---------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP Y+P SP YSP+SP YSPTSP YSP+SP
Sbjct: 1765 SPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSP 1803
Score = 55.1 bits (131), Expect = 2e-06
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L + M G + G TP +P T
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAAMFIGGGSTPSMTPPM-T 1507
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP P + + +P GG +FSP+++ S SP +SP+ PG SP
Sbjct: 1508 PW-ANCNTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 1558
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 1559 SSPGPSMSPYFPASP 1573
Score = 53.1 bits (126), Expect = 9e-06
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+ P YSP++P YSPTSP
Sbjct: 1822 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTPPMYSPTAPSHYSPTSP 1873
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1874 AYSPSSP 1880
[176][TOP]
>UniRef100_A2QAT7 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QAT7_ASPNC
Length = 1747
Score = 65.9 bits (159), Expect = 1e-09
Identities = 43/93 (46%), Positives = 53/93 (56%), Gaps = 13/93 (13%)
Frame = +3
Query: 132 TPGRSPISG-TPYHEGMM--SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTS------ 281
+PG SP S +P GM SP +M SP + + A SP A+SPTS
Sbjct: 1576 SPGYSPTSSYSPTSPGMAITSPRFMSTSPGFSPASPSFAPTSP-----AYSPTSPAYGQA 1630
Query: 282 ---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SPG+SP+SP YSPTSP +SP SP
Sbjct: 1631 SPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASP 1663
Score = 63.9 bits (154), Expect = 5e-09
Identities = 56/170 (32%), Positives = 71/170 (41%), Gaps = 47/170 (27%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKN------------AIELQLPSYMDGL----DFGMT 134
N++LGQ+AP GTGE +YL+ ++ AI + DG D G
Sbjct: 1452 NLILGQMAPAGTGEFDIYLDQNLMNTVVSNNARFGVMGAIGAKDAIISDGAATQYDTGSP 1511
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVG-GMAFSP--TSSPGYSPSS 305
S GTP E SP +P ++ P G G FSP TS GYSPSS
Sbjct: 1512 MQESAYIGTPDPESNFSPIRQAGAE---TPGGFTEYQPTGGFGGGFSPAATSPAGYSPSS 1568
Query: 306 P--------GYSPSS--------------------PGYSPTSPGYSPTSP 371
P GYSP+S PG+SP SP ++PTSP
Sbjct: 1569 PFSANPTSPGYSPTSSYSPTSPGMAITSPRFMSTSPGFSPASPSFAPTSP 1618
Score = 63.5 bits (153), Expect = 7e-09
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+PG SP S + SP+Y SP + +SP G FSPTS P YSP+SP
Sbjct: 1603 SPGFSPASPS---FAPTSPAYSPTSPAYGQASPTSPSYSPTSPG--FSPTS-PNYSPTSP 1656
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
+SP+SP +SPTSP YSPTSP
Sbjct: 1657 SFSPASPAFSPTSPSYSPTSP 1677
Score = 55.5 bits (132), Expect = 2e-06
Identities = 42/108 (38%), Positives = 54/108 (50%), Gaps = 28/108 (25%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMA--FSPTS--SPGYS 296
+PG SP S + SPS+ SP + + + SP VGG+ SPTS SP Y+
Sbjct: 1641 SPGFSPTSP---NYSPTSPSFSPASPAFSPTSPSYSPTSPAVGGVGRHLSPTSPTSPKYT 1697
Query: 297 PSSPGYSPSSP-----------------------GYSPTSPGYSPTSP 371
P+SPG+SP+SP GYSPTSP +SPTSP
Sbjct: 1698 PTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTSPAFSPTSP 1745
[177][TOP]
>UniRef100_P04052 DNA-directed RNA polymerase II subunit RPB1 n=2 Tax=Drosophila
melanogaster RepID=RPB1_DROME
Length = 1887
Score = 65.9 bits (159), Expect = 1e-09
Identities = 42/85 (49%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Frame = +3
Query: 138 GRSPISG--TPYHEGMMSPSYMLSPNLRLSPTN-----DAQFSPYVGGMAFSPTSSPGYS 296
G SP S +P + SPS+ S + SP N + +SP ++SPTS P YS
Sbjct: 1637 GYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSP--NSPSYSPTS-PSYS 1693
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
PSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1694 PSSPSYSPTSPCYSPTSPSYSPTSP 1718
Score = 65.5 bits (158), Expect = 2e-09
Identities = 42/89 (47%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTSS------ 284
G +P S S T SP Y + + SP+ S Y G A+SP+SS
Sbjct: 1630 GYSPSSSGYSPT-------SPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNS 1682
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPSSP YSPTSP YSPTSP
Sbjct: 1683 PSYSPTSPSYSPSSPSYSPTSPCYSPTSP 1711
Score = 60.5 bits (145), Expect = 6e-08
Identities = 36/91 (39%), Positives = 47/91 (51%)
Frame = +3
Query: 99 PSYMDGLDFGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT 278
P Y + F +P + Y SP SP+ N +SP ++SP
Sbjct: 1643 PVYSPTVQFQSSPSFAGSGSNIY-----SPGNAYSPSSSNYSPNSPSYSPT--SPSYSP- 1694
Query: 279 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SSP YSP+SP YSP+SP YSPTSP Y+P +P
Sbjct: 1695 SSPSYSPTSPCYSPTSPSYSPTSPNYTPVTP 1725
Score = 58.5 bits (140), Expect = 2e-07
Identities = 41/101 (40%), Positives = 48/101 (47%), Gaps = 23/101 (22%)
Frame = +3
Query: 138 GRSPISGTPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSS 305
G SP S +P H G SP +SP SP+ +SP S +SP YSPSS
Sbjct: 1544 GMSP-SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSS 1602
Query: 306 PGYSPSSP-------------------GYSPTSPGYSPTSP 371
P YSP+SP GYSP+S GYSPTSP
Sbjct: 1603 PNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1643
Score = 57.8 bits (138), Expect = 4e-07
Identities = 43/100 (43%), Positives = 51/100 (51%), Gaps = 23/100 (23%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP + SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPGP----SMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP-------------------GYSPSSPGYSPTSPGYSPT 365
SP GYSPSS GYSPTSP YSPT
Sbjct: 1609 SPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPT 1648
Score = 57.8 bits (138), Expect = 4e-07
Identities = 42/99 (42%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Frame = +3
Query: 132 TPGRSPISG--TPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVG-GMAFSPTS------ 281
+P SP S TP ++PSY SPN SP Y G+ +SPTS
Sbjct: 1710 SPSYSPTSPNYTP-----VTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPP 1764
Query: 282 ---------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP Y+P SP YSP+SP YSPTSP YSP+SP
Sbjct: 1765 SPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSP 1803
Score = 55.1 bits (131), Expect = 2e-06
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L + M G + G TP +P T
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAAMFIGGGSTPSMTPPM-T 1507
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP P + + +P GG +FSP+++ S SP +SP+ PG SP
Sbjct: 1508 PW-ANCNTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 1558
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 1559 SSPGPSMSPYFPASP 1573
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1822 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1873
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1874 AYSPSSP 1880
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1788 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1840
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1841 PTSPTYTPTARNYSPTSPMYSPTAP 1865
[178][TOP]
>UniRef100_B4L732 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
RepID=B4L732_DROMO
Length = 1889
Score = 65.5 bits (158), Expect = 2e-09
Identities = 43/96 (44%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTSS------ 284
G +P S S T SP Y + N + SP+ S Y G A+SP+SS
Sbjct: 1632 GYSPSSSGYSPT-------SPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNS 1684
Query: 285 -------PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSPSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1685 PSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSP 1720
Score = 59.3 bits (142), Expect = 1e-07
Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +3
Query: 129 MTPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
+TP SP S H SP+Y + ++ SPT+ +SP SP SP Y+P
Sbjct: 1725 VTPSYSPTSPNYSASPHYSPASPAYSQT-GVKYSPTSPT-YSPPSPSYDGSP-GSPQYTP 1781
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1782 GSPQYSPASPKYSPTSPLYSPSSP 1805
Score = 58.5 bits (140), Expect = 2e-07
Identities = 44/103 (42%), Positives = 52/103 (50%), Gaps = 25/103 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP + SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPGP----SMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPSS GYSPTSP YSPTS
Sbjct: 1609 SPLYASTSPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTS 1651
Score = 57.8 bits (138), Expect = 4e-07
Identities = 41/103 (39%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Frame = +3
Query: 138 GRSPISGTPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSS 305
G SP S +P H G SP +SP SP+ +SP S +SP YSPSS
Sbjct: 1544 GMSP-SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSS 1602
Query: 306 PGYSPSSP---------------------GYSPTSPGYSPTSP 371
P YSP+SP GYSP+S GYSPTSP
Sbjct: 1603 PNYSPTSPLYASTSPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1645
Score = 55.8 bits (133), Expect = 1e-06
Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL--QLPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P T
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGAAIFMGGGSTPSMTPPM-T 1507
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP+ +S GG +FSP+++ S SP +SP+ PG SP
Sbjct: 1508 PW-VNCHTPRYF-SPSGHVSAMTP-------GGPSFSPSAASDASGMSPSWSPAHPGSSP 1558
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 1559 SSPGPSMSPYFPASP 1573
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1824 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1875
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1876 AYSPSSP 1882
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1790 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1842
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1843 PTSPTYTPTARNYSPTSPMYSPTAP 1867
[179][TOP]
>UniRef100_B4JXA6 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
RepID=B4JXA6_DROGR
Length = 1889
Score = 65.5 bits (158), Expect = 2e-09
Identities = 43/96 (44%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Frame = +3
Query: 126 GMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSP-YVGGMAFSPTSS------ 284
G +P S S T SP Y + N + SP+ S Y G A+SP+SS
Sbjct: 1632 GYSPSSSGYSPT-------SPVYSPTSNFQSSPSFAGSGSNLYSPGNAYSPSSSNYSPNS 1684
Query: 285 -------PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSPSSP YSP+SP YSPTSP YSPTSP
Sbjct: 1685 PSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSP 1720
Score = 59.3 bits (142), Expect = 1e-07
Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +3
Query: 129 MTPGRSPIS---GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSP 299
+TP SP S H SP+Y + ++ SPT+ +SP SP SP Y+P
Sbjct: 1725 VTPSYSPTSPNYSASPHYSPASPAYSQT-GVKYSPTSPT-YSPPSPSYDGSP-GSPQYTP 1781
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
SP YSP+SP YSPTSP YSP+SP
Sbjct: 1782 GSPQYSPASPKYSPTSPLYSPSSP 1805
Score = 58.5 bits (140), Expect = 2e-07
Identities = 44/103 (42%), Positives = 52/103 (50%), Gaps = 25/103 (24%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLR--LSPTNDAQFSPYVGGMA--FSPTSSPGYSPS 302
PG SP S P MSP + SP++ SPT+ + GG + +SP SSP YSP+
Sbjct: 1554 PGSSPSSPGP----SMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSP-SSPNYSPT 1608
Query: 303 SP---------------------GYSPSSPGYSPTSPGYSPTS 368
SP GYSPSS GYSPTSP YSPTS
Sbjct: 1609 SPLYTATSPRYASATPNFNAQSTGYSPSSSGYSPTSPVYSPTS 1651
Score = 57.8 bits (138), Expect = 4e-07
Identities = 41/103 (39%), Positives = 48/103 (46%), Gaps = 25/103 (24%)
Frame = +3
Query: 138 GRSPISGTPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSS 305
G SP S +P H G SP +SP SP+ +SP S +SP YSPSS
Sbjct: 1544 GMSP-SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSS 1602
Query: 306 PGYSPSSP---------------------GYSPTSPGYSPTSP 371
P YSP+SP GYSP+S GYSPTSP
Sbjct: 1603 PNYSPTSPLYTATSPRYASATPNFNAQSTGYSPSSSGYSPTSP 1645
Score = 57.8 bits (138), Expect = 4e-07
Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Frame = +3
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTS--- 347
+ SP SP+ N +SP ++SP SSP YSP+SP YSP+SP YSPTS
Sbjct: 1666 LYSPGNAYSPSSSNYSPNSPSYSPM--SPSYSP-SSPSYSPTSPCYSPTSPSYSPTSPKY 1722
Query: 348 ----PGYSPTSP 371
P YSPTSP
Sbjct: 1723 TAVTPSYSPTSP 1734
Score = 56.2 bits (134), Expect = 1e-06
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIEL--QLPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P T
Sbjct: 1449 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGAAIFMGGGSTPSMTPPM-T 1507
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP P + + +P GG +FSP+++ S SP +SP+ PG SP
Sbjct: 1508 PW-VNCHTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 1558
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 1559 SSPGPSMSPYFPASP 1573
Score = 55.1 bits (131), Expect = 2e-06
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPG-YSPTSP 350
SP Y SPN+ + + ++SP SPT +P YSP+SP YSP++P YSPTSP
Sbjct: 1824 SPRY--SPNMSIYSPSSTKYSPT------SPTYTPTARNYSPTSPMYSPTAPSHYSPTSP 1875
Query: 351 GYSPTSP 371
YSP+SP
Sbjct: 1876 AYSPSSP 1882
Score = 53.9 bits (128), Expect = 5e-06
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +3
Query: 132 TPGRSPIS-----GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYS 296
+P SP S +P H SPS SP ++SP M+ SS YS
Sbjct: 1790 SPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTYSATSPRYSP---NMSIYSPSSTKYS 1842
Query: 297 PSSPGYSPSSPGYSPTSPGYSPTSP 371
P+SP Y+P++ YSPTSP YSPT+P
Sbjct: 1843 PTSPTYTPTARNYSPTSPMYSPTAP 1867
[180][TOP]
>UniRef100_A5DCV1 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DCV1_PICGU
Length = 224
Score = 65.5 bits (158), Expect = 2e-09
Identities = 36/74 (48%), Positives = 48/74 (64%)
Frame = +3
Query: 150 ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 329
++ P+H P+++LSP+ SPT+ + +SPTS P YSP+SP YSP+SP
Sbjct: 120 VTHQPHH-----PTHLLSPSY--SPTSPS----------YSPTS-PSYSPTSPSYSPTSP 161
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 162 SYSPTSPSYSPTSP 175
[181][TOP]
>UniRef100_C5LSN8 P35 antigen, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC
50983 RepID=C5LSN8_9ALVE
Length = 170
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 5 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 58
Query: 360 PTSP 371
PTSP
Sbjct: 59 PTSP 62
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 12 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 65
Query: 360 PTSP 371
PTSP
Sbjct: 66 PTSP 69
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 19 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 72
Query: 360 PTSP 371
PTSP
Sbjct: 73 PTSP 76
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 26 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 79
Query: 360 PTSP 371
PTSP
Sbjct: 80 PTSP 83
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 33 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 86
Query: 360 PTSP 371
PTSP
Sbjct: 87 PTSP 90
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 40 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 93
Query: 360 PTSP 371
PTSP
Sbjct: 94 PTSP 97
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 47 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYS 100
Query: 360 PTSP 371
PTSP
Sbjct: 101 PTSP 104
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 54 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPSYS 107
Query: 360 PTSP 371
PTSP
Sbjct: 108 PTSP 111
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 61 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPAYS 114
Query: 360 PTSP 371
PTSP
Sbjct: 115 PTSP 118
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 68 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PAYSPTSPSYSPTSPAYSPTSPAYS 121
Query: 360 PTSP 371
PTSP
Sbjct: 122 PTSP 125
Score = 64.7 bits (156), Expect = 3e-09
Identities = 39/64 (60%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP+Y SP SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 75 SPAYSPTSP--AYSPTSPA-YSPT--SPAYSPTS-PSYSPTSPAYSPTSPAYSPTSPAYS 128
Query: 360 PTSP 371
PTSP
Sbjct: 129 PTSP 132
Score = 64.3 bits (155), Expect = 4e-09
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = +3
Query: 219 SPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPT+ A +SP A+SPTS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 2 SPTSPA-YSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAYSPTSP 48
Score = 60.8 bits (146), Expect = 4e-08
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = +3
Query: 267 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SPTS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1 YSPTS-PAYSPTSPAYSPTSPAYSPTSPAYSPTSP 34
Score = 53.5 bits (127), Expect = 7e-06
Identities = 30/58 (51%), Positives = 35/58 (60%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 356
SP+Y SP +SP A+SPTS P YSP+SP YSP+SP YSPTSP Y
Sbjct: 89 SPAY--SPTSPAYSPTSPSYSPT--SPAYSPTS-PAYSPTSPAYSPTSPAYSPTSPAY 141
[182][TOP]
>UniRef100_UPI000151A8B4 hypothetical protein PGUG_01106 n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151A8B4
Length = 224
Score = 63.9 bits (154), Expect = 5e-09
Identities = 36/74 (48%), Positives = 48/74 (64%)
Frame = +3
Query: 150 ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 329
++ P+H P+++LSP+ SPT+ + +SPTS P YSP+SP YSP+SP
Sbjct: 120 VTHQPHH-----PTHLLSPSY--SPTSPS----------YSPTS-PSYSPTSPLYSPTSP 161
Query: 330 GYSPTSPGYSPTSP 371
YSPTSP YSPTSP
Sbjct: 162 SYSPTSPSYSPTSP 175
[183][TOP]
>UniRef100_C7YI77 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YI77_NECH7
Length = 1750
Score = 63.9 bits (154), Expect = 5e-09
Identities = 57/185 (30%), Positives = 74/185 (40%), Gaps = 62/185 (33%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPISG-------T 161
N+MLGQ+AP+GTG + L+ +ML+ I D G+ PG P+ G T
Sbjct: 1446 NVMLGQMAPMGTGNFDVLLDPKMLETVIS-------DNSRMGLMPG-MPVKGGEIEGAAT 1497
Query: 162 PYHEG----------MMSP----------------------------SYMLSPNLR---L 218
PY G + SP S +SP
Sbjct: 1498 PYDTGSPMADSGYLSLSSPAAGNFSPIQGAGSDTPAGFGNTEYGFGGSTAMSPYAMRGGT 1557
Query: 219 SPTNDAQFSPYVGGMAFSPTSSPGYSP--------------SSPGYSPSSPGYSPTSPGY 356
SP + SP+ G +SPTS YSP +SP +SPSSP +SPTSP
Sbjct: 1558 SPFTTSPTSPFGPGGGYSPTSPNAYSPTSPLVDGGMGGRYATSPSFSPSSPSFSPTSPMV 1617
Query: 357 SPTSP 371
PTSP
Sbjct: 1618 RPTSP 1622
Score = 56.2 bits (134), Expect = 1e-06
Identities = 43/97 (44%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYH------EGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS- 281
FG G SP S Y +G M Y SP+ S + + SP V PTS
Sbjct: 1568 FGPGGGYSPTSPNAYSPTSPLVDGGMGGRYATSPSFSPSSPSFSPTSPMV-----RPTSP 1622
Query: 282 -SPGYSPSSPGYSPSSPG----YSPTSPGY--SPTSP 371
SP YSPSSP YSP+SP YSPTSP SPTSP
Sbjct: 1623 ASPNYSPSSPNYSPASPSSPRHYSPTSPAQFNSPTSP 1659
Score = 55.8 bits (133), Expect = 1e-06
Identities = 36/97 (37%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Frame = +3
Query: 123 FGMTPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYV----GGMAFSPTSSPG 290
+ M G SP + SP+ P SPT+ +SP GGM +SP
Sbjct: 1551 YAMRGGTSPFT--------TSPTSPFGPGGGYSPTSPNAYSPTSPLVDGGMGGRYATSPS 1602
Query: 291 YSPSSPGY----------SPSSPGYSPTSPGYSPTSP 371
+SPSSP + SP+SP YSP+SP YSP SP
Sbjct: 1603 FSPSSPSFSPTSPMVRPTSPASPNYSPSSPNYSPASP 1639
Score = 53.9 bits (128), Expect = 5e-06
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Frame = +3
Query: 132 TPGRSPIS-GTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P SP S +P H SP+ SP +SP + T+SP YSP+SP
Sbjct: 1631 SPNYSPASPSSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLHAGGTTSPSYSPASP 1690
Query: 309 GYSPSSPG---------------YSPTSPGYSPTSP 371
+SP+SP SPTSP YSPTSP
Sbjct: 1691 TWSPTSPEAYSPTSPYQRSPGAQQSPTSPSYSPTSP 1726
[184][TOP]
>UniRef100_B2AA31 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
RepID=B2AA31_PODAN
Length = 1748
Score = 63.5 bits (153), Expect = 7e-09
Identities = 59/191 (30%), Positives = 77/191 (40%), Gaps = 68/191 (35%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMT-------------PGR 143
N+MLGQ+AP+GTG + L+ +ML+ I + GL GMT
Sbjct: 1452 NVMLGQMAPMGTGHFEVLLDPKMLETVIS---DNSRMGLMAGMTIKGNQLEGAATPYDTG 1508
Query: 144 SPISGTPYHEGMMSPS----------------------------------YMLSPNLRLS 221
SP++ Y G SP+ Y SP S
Sbjct: 1509 SPMADNGYLGGSYSPTMGNFSPIVGNESGGPPGFASEYGGGGYGSSSVNPYATSPGRPTS 1568
Query: 222 PTNDAQFSPYVGGMA-------FSPT-----------SSPGYSPSSPGYSPSSPGY---S 338
P + SP+ G + +SPT SSP +SPSSP +SP+SP S
Sbjct: 1569 PFTTSPTSPFSYGYSPTSPAAGYSPTSPLIDAGGRFASSPQFSPSSPSFSPTSPMLRPGS 1628
Query: 339 PTSPGYSPTSP 371
PTSP YSPTSP
Sbjct: 1629 PTSPSYSPTSP 1639
Score = 58.9 bits (141), Expect = 2e-07
Identities = 37/82 (45%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLR-LSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
+P SP S SPSY SP+ SP +SP SPTS P YSP+S
Sbjct: 1614 SPSFSPTSPMLRPGSPTSPSYSPTSPSYSPASPAATRHYSPTSPAQFQSPTS-PSYSPTS 1672
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP + TSP YSP SP
Sbjct: 1673 PSYSPASPAFQATSPSYSPASP 1694
Score = 58.2 bits (139), Expect = 3e-07
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSP--NLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPS 302
+P P S T SPSY SP SPT+ AQF ++SPTS P YSP+
Sbjct: 1621 SPMLRPGSPTSPSYSPTSPSYSPASPAATRHYSPTSPAQFQSPTSP-SYSPTS-PSYSPA 1678
Query: 303 SPGYSPSSPGYSPTSPGYSPTSP 371
SP + +SP YSP SP +SPTSP
Sbjct: 1679 SPAFQATSPSYSPASPNWSPTSP 1701
[185][TOP]
>UniRef100_O09451 DNA-directed RNA polymerase (Fragment) n=1 Tax=Bonnemaisonia hamifera
RepID=O09451_9FLOR
Length = 1732
Score = 62.8 bits (151), Expect = 1e-08
Identities = 55/157 (35%), Positives = 66/157 (42%), Gaps = 38/157 (24%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGR----------SPI 152
NIMLGQLAPIGTG L LN++MLK+AIE + + G +P SP
Sbjct: 1383 NIMLGQLAPIGTGSFRLLLNEKMLKDAIEPESIDAQASMGLGQSPAGNRTYEGASVWSPA 1442
Query: 153 SG--TP----YHEGMMSPSYMLSPNLRLSPTN-------DAQFSPYVGGMAFSPTS---- 281
G TP + +P + SP +P D Q SP G AFSPT
Sbjct: 1443 RGDATPGRKKAFDARATPGLLYSPAAWGTPLRPRTEQGLDQQMSPSADGAAFSPTPMTPG 1502
Query: 282 -----------SPGYSPSSPGYSPSSPGYSPTSPGYS 359
+P SP P SPG TSP YS
Sbjct: 1503 GAGGGGGMGGLTPLQSPGREYTVPLSPGGGGTSPFYS 1539
[186][TOP]
>UniRef100_Q54LJ4 Type A von Willebrand factor domain-containing protein n=1
Tax=Dictyostelium discoideum RepID=Q54LJ4_DICDI
Length = 2563
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/79 (46%), Positives = 42/79 (53%)
Frame = +3
Query: 135 PGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGY 314
P P T G PS + SPT SP+ + PTS P YSP+SP Y
Sbjct: 1819 PQPPPPPSTSLGRGAPPPSLFFQASQPYSPT-----SPF-----YIPTS-PSYSPTSPSY 1867
Query: 315 SPSSPGYSPTSPGYSPTSP 371
SP+SP YSPTSP YSPTSP
Sbjct: 1868 SPTSPSYSPTSPSYSPTSP 1886
[187][TOP]
>UniRef100_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cryptosporidium parvum
Iowa II RepID=Q5CUJ2_CRYPV
Length = 1902
Score = 62.4 bits (150), Expect = 2e-08
Identities = 39/81 (48%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T H SP Y SP+ + + + SP+ +SPTS P YSP+SP
Sbjct: 1739 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPH-----YSPTS-PHYSPTSP 1792
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSPTSP YSPTSP
Sbjct: 1793 HYSPSSPHYSPTSPQYSPTSP 1813
Score = 62.0 bits (149), Expect = 2e-08
Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 129 MTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
++P S T H SP Y SP+ + + + SP+ +SPTS P YSP+S
Sbjct: 1682 LSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPH-----YSPTS-PHYSPTS 1735
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 1736 PHYSPTSPHYSPTSPHYSPTSP 1757
Score = 60.1 bits (144), Expect = 7e-08
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +3
Query: 198 LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SP+L + + + SP+ +SPTS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1678 ISPDLSPTSPHYSPTSPH-----YSPTS-PHYSPTSPHYSPTSPHYSPTSPHYSPTSP 1729
Score = 60.1 bits (144), Expect = 7e-08
Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T H SP Y SP+ + + + SP+ +SPTS P YSPSSP
Sbjct: 1746 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPH-----YSPTS-PHYSPSSP 1799
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP Y+P SP
Sbjct: 1800 HYSPTSPQYSPTSPNYNPASP 1820
Score = 56.6 bits (135), Expect = 8e-07
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T H SP Y SP+ + + + SP+ +SP SSP YSP+SP
Sbjct: 1753 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPH-----YSP-SSPHYSPTSP 1806
Query: 309 GYSPSSPGYSPTSPGYSPTS 368
YSP+SP Y+P SP YSPTS
Sbjct: 1807 QYSPTSPNYNPASPNYSPTS 1826
[188][TOP]
>UniRef100_Q5CH45 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
RepID=Q5CH45_CRYHO
Length = 1895
Score = 62.4 bits (150), Expect = 2e-08
Identities = 39/81 (48%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T H SP Y SP+ + + + SP+ +SPTS P YSP+SP
Sbjct: 1732 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPH-----YSPTS-PHYSPTSP 1785
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSPSSP YSPTSP YSPTSP
Sbjct: 1786 HYSPSSPHYSPTSPQYSPTSP 1806
Score = 62.0 bits (149), Expect = 2e-08
Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 129 MTPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSS 305
++P S T H SP Y SP+ + + + SP+ +SPTS P YSP+S
Sbjct: 1675 LSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPH-----YSPTS-PHYSPTS 1728
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSPTSP YSPTSP
Sbjct: 1729 PHYSPTSPHYSPTSPHYSPTSP 1750
Score = 60.1 bits (144), Expect = 7e-08
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +3
Query: 198 LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
+SP+L + + + SP+ +SPTS P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 1671 ISPDLSPTSPHYSPTSPH-----YSPTS-PHYSPTSPHYSPTSPHYSPTSPHYSPTSP 1722
Score = 60.1 bits (144), Expect = 7e-08
Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T H SP Y SP+ + + + SP+ +SPTS P YSPSSP
Sbjct: 1739 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPH-----YSPTS-PHYSPSSP 1792
Query: 309 GYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPTSP Y+P SP
Sbjct: 1793 HYSPTSPQYSPTSPNYNPASP 1813
Score = 56.6 bits (135), Expect = 8e-07
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
+P S T H SP Y SP+ + + + SP+ +SP SSP YSP+SP
Sbjct: 1746 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPH-----YSP-SSPHYSPTSP 1799
Query: 309 GYSPSSPGYSPTSPGYSPTS 368
YSP+SP Y+P SP YSPTS
Sbjct: 1800 QYSPTSPNYNPASPNYSPTS 1819
[189][TOP]
>UniRef100_O77375 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
RepID=O77375_PLAF7
Length = 2457
Score = 62.0 bits (149), Expect = 2e-08
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 356
+MSP Y ++ + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPTSP Y
Sbjct: 2283 VMSPVYSVT-SPKYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPTSPKY 2337
Query: 357 SPTSP 371
SPTSP
Sbjct: 2338 SPTSP 2342
Score = 56.6 bits (135), Expect = 8e-07
Identities = 37/84 (44%), Positives = 44/84 (52%), Gaps = 16/84 (19%)
Frame = +3
Query: 168 HEGMMSPSYMLSPNLRLSPTNDAQFSPY----------------VGGMAFSPTSSPGYSP 299
+ + SPSY SP N+A +SP V +S TS P YSP
Sbjct: 2241 NHNIYSPSY--SPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTS-PKYSP 2297
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP YSP+SP YSPTSP YSPTSP
Sbjct: 2298 TSPKYSPTSPKYSPTSPKYSPTSP 2321
[190][TOP]
>UniRef100_C6F0A4 RNA polymerase II (Fragment) n=2 Tax=Plasmodium (Laverania)
RepID=C6F0A4_PLAFA
Length = 202
Score = 62.0 bits (149), Expect = 2e-08
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 356
+MSP Y ++ + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPTSP Y
Sbjct: 35 VMSPVYSVT-SPKYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPTSPKY 89
Query: 357 SPTSP 371
SPTSP
Sbjct: 90 SPTSP 94
[191][TOP]
>UniRef100_C6F0A3 RNA polymerase II (Fragment) n=1 Tax=Plasmodium falciparum
RepID=C6F0A3_PLAFA
Length = 195
Score = 62.0 bits (149), Expect = 2e-08
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 356
+MSP Y ++ + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPTSP Y
Sbjct: 35 VMSPVYSVT-SPKYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPTSPKY 89
Query: 357 SPTSP 371
SPTSP
Sbjct: 90 SPTSP 94
[192][TOP]
>UniRef100_C6F0A2 RNA polymerase II (Fragment) n=1 Tax=Plasmodium falciparum
RepID=C6F0A2_PLAFA
Length = 223
Score = 62.0 bits (149), Expect = 2e-08
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 356
+MSP Y ++ + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPTSP Y
Sbjct: 35 VMSPVYSVT-SPKYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPTSPKY 89
Query: 357 SPTSP 371
SPTSP
Sbjct: 90 SPTSP 94
Score = 59.3 bits (142), Expect = 1e-07
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 58 SPKYSPTSP--KYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPTSPKYS 111
Query: 360 PTSP 371
PTSP
Sbjct: 112 PTSP 115
Score = 59.3 bits (142), Expect = 1e-07
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 65 SPKYSPTSP--KYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPTSPKYS 118
Query: 360 PTSP 371
PTSP
Sbjct: 119 PTSP 122
[193][TOP]
>UniRef100_A4RMP1 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
RepID=A4RMP1_MAGGR
Length = 1757
Score = 62.0 bits (149), Expect = 2e-08
Identities = 55/148 (37%), Positives = 73/148 (49%), Gaps = 25/148 (16%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQL-PSYMDGL-------DFGMTP--GRSPI 152
N+MLGQLAP+GTG + L+ +ML+ + M GL + TP SP+
Sbjct: 1449 NVMLGQLAPMGTGAFEVLLDPKMLETVVSNNARMGLMPGLTVKGSSAEGAATPYDTGSPM 1508
Query: 153 SGTPYHEGMMSPSY-MLSPNL---RLSPTNDA---------QFSPYVGGMAFSPTSSPGY 293
+ Y+ GM SP+ SP + +PT A +PY G + PTS
Sbjct: 1509 GDSGYNLGMASPTMGNFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSGTSPRPTSPFST 1568
Query: 294 SPSSPGYSPSSPGYSPTSP--GYSPTSP 371
SP+SP +S YSPTSP GYSPTSP
Sbjct: 1569 SPTSP-FSAGYGSYSPTSPMAGYSPTSP 1595
[194][TOP]
>UniRef100_P14248 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Plasmodium
falciparum CDC/Honduras RepID=RPB1_PLAFD
Length = 2452
Score = 62.0 bits (149), Expect = 2e-08
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 356
+MSP Y ++ + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPTSP Y
Sbjct: 2285 VMSPVYSVT-SPKYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPTSPKY 2339
Query: 357 SPTSP 371
SPTSP
Sbjct: 2340 SPTSP 2344
Score = 56.6 bits (135), Expect = 8e-07
Identities = 37/84 (44%), Positives = 44/84 (52%), Gaps = 16/84 (19%)
Frame = +3
Query: 168 HEGMMSPSYMLSPNLRLSPTNDAQFSPY----------------VGGMAFSPTSSPGYSP 299
+ + SPSY SP N+A +SP V +S TS P YSP
Sbjct: 2243 NHNIYSPSY--SPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTS-PKYSP 2299
Query: 300 SSPGYSPSSPGYSPTSPGYSPTSP 371
+SP YSP+SP YSPTSP YSPTSP
Sbjct: 2300 TSPKYSPTSPKYSPTSPKYSPTSP 2323
[195][TOP]
>UniRef100_C6F1F0 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
RepID=C6F1F0_PLAVI
Length = 218
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/69 (53%), Positives = 49/69 (71%)
Frame = +3
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
YH ++SP Y ++ + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPT
Sbjct: 48 YHS-VVSPVYSVT-SPKYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPT 101
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 102 SPKYSPTSP 110
Score = 60.8 bits (146), Expect = 4e-08
Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 11/89 (12%)
Frame = +3
Query: 138 GRSPISGTPYHEGMMSPSYML---SPNLR-----LSPT---NDAQFSPYVGGMAFSPTSS 284
G S ++GT + SP+ L +PN+ +SP ++SP +SPTS
Sbjct: 18 GSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTSPKYSPT--SPKYSPTS- 74
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 75 PKYSPTSPKYSPTSPKYSPTSPKYSPTSP 103
[196][TOP]
>UniRef100_C6F1E9 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
RepID=C6F1E9_PLAVI
Length = 225
Score = 61.6 bits (148), Expect = 3e-08
Identities = 37/69 (53%), Positives = 49/69 (71%)
Frame = +3
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
YH ++SP Y ++ + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPT
Sbjct: 48 YHS-VVSPVYSVT-SPKYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPT 101
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 102 SPKYSPTSP 110
Score = 60.8 bits (146), Expect = 4e-08
Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 11/89 (12%)
Frame = +3
Query: 138 GRSPISGTPYHEGMMSPSYML---SPNLR-----LSPT---NDAQFSPYVGGMAFSPTSS 284
G S ++GT + SP+ L +PN+ +SP ++SP +SPTS
Sbjct: 18 GSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTSPKYSPT--SPKYSPTS- 74
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 75 PKYSPTSPKYSPTSPKYSPTSPKYSPTSP 103
Score = 57.8 bits (138), Expect = 4e-07
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SP Y SP + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPTSP YS
Sbjct: 67 SPKYSPTSP--KYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPTSPQYS 120
Query: 360 PTSP 371
P+SP
Sbjct: 121 PSSP 124
[197][TOP]
>UniRef100_Q4UCP5 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
RepID=Q4UCP5_THEAN
Length = 1678
Score = 61.2 bits (147), Expect = 3e-08
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 20/143 (13%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPIS-GTPYHEGM 179
N+++GQL+P GTG + +++ L++A + + D L ++P SP+S TP +
Sbjct: 1441 NVIVGQLSPYGTGAFDIMIDEVKLRDANQTNAINVADTLGL-VSPDSSPLSPSTPATKQT 1499
Query: 180 MSP--------SYMLSP--NLRLSP-TNDAQFSPYVGGMAFSPTS-SPGYSPSSPGYSPS 323
MSP S M+SP + + P T Y G +FSPTS + SP+SP SP+
Sbjct: 1500 MSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPTSPMSPTSP-MSPT 1558
Query: 324 SPGYSPT-------SPGYSPTSP 371
SP SPT SP YSPTSP
Sbjct: 1559 SP-MSPTSAISPVYSPAYSPTSP 1580
Score = 59.3 bits (142), Expect = 1e-07
Identities = 44/97 (45%), Positives = 53/97 (54%), Gaps = 21/97 (21%)
Frame = +3
Query: 144 SPISGTPYHEGMMSPSYM-------LSPNLRLSPTNDAQ---FSPYVGGMAFSPTS---S 284
SP+S T + SP+Y SP LSPT+ +SP A SPTS S
Sbjct: 1559 SPMSPTSAISPVYSPAYSPTSPMSPTSPTSALSPTSPVYSPAYSPTSPTSAMSPTSPVYS 1618
Query: 285 PGYSPSSP--GYSPS----SPGYSPTSP--GYSPTSP 371
P YSP+SP GY+P+ SP YSPT+P GYSPTSP
Sbjct: 1619 PAYSPTSPNLGYAPTSPVYSPAYSPTTPNYGYSPTSP 1655
Score = 59.3 bits (142), Expect = 1e-07
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Frame = +3
Query: 144 SPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQ---FSPYVGGMAFSPTS---SPGYSPS 302
SP S + SP+Y SP +SPT+ +SP + ++PTS SP YSP+
Sbjct: 1585 SPTSALSPTSPVYSPAYSPTSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSPVYSPAYSPT 1644
Query: 303 SP--GYSPSSPGYSPTSPGYSPTSP 371
+P GYSP+SP SPTSP YSPT P
Sbjct: 1645 TPNYGYSPTSP-LSPTSPAYSPTDP 1668
[198][TOP]
>UniRef100_Q4N0F9 DNA-directed RNA polymerase n=1 Tax=Theileria parva
RepID=Q4N0F9_THEPA
Length = 1681
Score = 61.2 bits (147), Expect = 3e-08
Identities = 46/103 (44%), Positives = 55/103 (53%), Gaps = 23/103 (22%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQ------------FSPYVGGMAFSP 275
T SP+S T + SP+Y SP +SPT+ A +SP A SP
Sbjct: 1558 TSPMSPMSPTSAMSPVYSPAY--SPTSPMSPTSPANALSPTSPVYSPAYSPTSPTSAMSP 1615
Query: 276 TS---SPGYSPSSP--GYSPS----SPGYSPTSP--GYSPTSP 371
TS SP YSP+SP GY+P+ SP YSPTSP GYSPTSP
Sbjct: 1616 TSPVYSPAYSPTSPNLGYAPTSPVYSPAYSPTSPNYGYSPTSP 1658
Score = 60.1 bits (144), Expect = 7e-08
Identities = 53/145 (36%), Positives = 76/145 (52%), Gaps = 22/145 (15%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPGRSPIS-GTPYHEGM 179
N+++GQL+P GTG + +++ L++A + + D L ++P SP+S TP +
Sbjct: 1441 NVIVGQLSPYGTGAFDIMIDEVKLRDANQTNAINVADTLGL-VSPDSSPLSPSTPATKQT 1499
Query: 180 MSP--------SYMLSP--NLRLSP-TNDAQFSPYVGGMAFSPTS-SPGYSPSSPGYSPS 323
MSP S M+SP + + P T Y G +FSPTS + SP+SP SP+
Sbjct: 1500 MSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPTSPMSPTSP-MSPT 1558
Query: 324 SP--GYSPT-------SPGYSPTSP 371
SP SPT SP YSPTSP
Sbjct: 1559 SPMSPMSPTSAMSPVYSPAYSPTSP 1583
Score = 59.3 bits (142), Expect = 1e-07
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Frame = +3
Query: 144 SPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQ---FSPYVGGMAFSPTS---SPGYSPS 302
SP + + SP+Y SP +SPT+ +SP + ++PTS SP YSP+
Sbjct: 1588 SPANALSPTSPVYSPAYSPTSPTSAMSPTSPVYSPAYSPTSPNLGYAPTSPVYSPAYSPT 1647
Query: 303 SP--GYSPSSPGYSPTSPGYSPTSP 371
SP GYSP+SP SPTSP YSPT P
Sbjct: 1648 SPNYGYSPTSP-LSPTSPAYSPTDP 1671
[199][TOP]
>UniRef100_B3L428 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
RepID=B3L428_PLAKH
Length = 2353
Score = 61.2 bits (147), Expect = 3e-08
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
YH ++SP+Y ++ + + SPT+ ++SP + PTS P YSP+SP YSP+SP YSPT
Sbjct: 2183 YHS-VLSPAYAVT-SPKYSPTSP-KYSPT--SPKYMPTS-PKYSPTSPKYSPTSPKYSPT 2236
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 2237 SPKYSPTSP 2245
[200][TOP]
>UniRef100_C6F1F2 RNA polymerase II (Fragment) n=1 Tax=Plasmodium cynomolgi
RepID=C6F1F2_9APIC
Length = 232
Score = 60.8 bits (146), Expect = 4e-08
Identities = 36/63 (57%), Positives = 44/63 (69%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SP Y L + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPTSP YSP
Sbjct: 74 SPKY-LPTSPKYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPTSPQYSP 128
Query: 363 TSP 371
TSP
Sbjct: 129 TSP 131
Score = 59.3 bits (142), Expect = 1e-07
Identities = 36/69 (52%), Positives = 48/69 (69%)
Frame = +3
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
YH ++SP Y ++ + + SPT+ ++SP + PTS P YSP+SP YSP+SP YSPT
Sbjct: 48 YHS-VVSPVYSVT-SPKYSPTSP-KYSPT--SPKYLPTS-PKYSPTSPKYSPTSPKYSPT 101
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 102 SPKYSPTSP 110
[201][TOP]
>UniRef100_C6F1F1 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
RepID=C6F1F1_PLAVI
Length = 211
Score = 60.8 bits (146), Expect = 4e-08
Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 11/89 (12%)
Frame = +3
Query: 138 GRSPISGTPYHEGMMSPSYML---SPNLR-----LSPT---NDAQFSPYVGGMAFSPTSS 284
G S ++GT + SP+ L +PN+ +SP ++SP +SPTS
Sbjct: 18 GSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTSPKYSPT--SPKYSPTS- 74
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 75 PKYSPTSPKYSPTSPKYSPTSPKYSPTSP 103
Score = 60.1 bits (144), Expect = 7e-08
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
YH ++SP Y ++ + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPT
Sbjct: 48 YHS-VVSPVYSVT-SPKYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPT 101
Query: 345 SPGYSPTSP 371
SP YSP+SP
Sbjct: 102 SPQYSPSSP 110
[202][TOP]
>UniRef100_A5K7P4 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
RepID=A5K7P4_PLAVI
Length = 2379
Score = 60.8 bits (146), Expect = 4e-08
Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 11/89 (12%)
Frame = +3
Query: 138 GRSPISGTPYHEGMMSPSYML---SPNLR-----LSPT---NDAQFSPYVGGMAFSPTSS 284
G S ++GT + SP+ L +PN+ +SP ++SP +SPTS
Sbjct: 2186 GSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVTSPKYSPT--SPKYSPTS- 2242
Query: 285 PGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 2243 PKYSPTSPKYSPTSPKYSPTSPKYSPTSP 2271
Score = 60.1 bits (144), Expect = 7e-08
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
YH ++SP Y ++ + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPT
Sbjct: 2216 YHS-VVSPVYSVT-SPKYSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPT 2269
Query: 345 SPGYSPTSP 371
SP YSP+SP
Sbjct: 2270 SPQYSPSSP 2278
[203][TOP]
>UniRef100_UPI00004C0623 PREDICTED: similar to zinc finger protein 239 (predicted) isoform 1
n=1 Tax=Canis lupus familiaris RepID=UPI00004C0623
Length = 554
Score = 60.5 bits (145), Expect = 6e-08
Identities = 30/66 (45%), Positives = 35/66 (53%)
Frame = +3
Query: 174 GMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 353
G + PS +P SP +D+Q + SPGY P SPGY P SPGY P SPG
Sbjct: 92 GFVPPSPEFAPR---SPDSDSQSPEFEPQSPRYEPQSPGYEPRSPGYEPKSPGYEPKSPG 148
Query: 354 YSPTSP 371
Y P SP
Sbjct: 149 YEPRSP 154
[204][TOP]
>UniRef100_C6F1F6 RNA polymerase II (Fragment) n=1 Tax=Plasmodium vivax
RepID=C6F1F6_PLAVI
Length = 211
Score = 60.1 bits (144), Expect = 7e-08
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +3
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
YH ++SP Y ++ + + SPT+ ++SP +SPTS P YSP+SP YSP+SP YSPT
Sbjct: 48 YHS-VVSPVYSVT-SPKXSPTSP-KYSPT--SPKYSPTS-PKYSPTSPKYSPTSPKYSPT 101
Query: 345 SPGYSPTSP 371
SP YSP+SP
Sbjct: 102 SPQYSPSSP 110
Score = 59.3 bits (142), Expect = 1e-07
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Frame = +3
Query: 138 GRSPISGTPYHEGMMSPSYML---SPNLR-----LSPTNDAQFSPYVGGMA--FSPTSSP 287
G S ++GT + SP+ L +PN+ +SP SP + +SPTS P
Sbjct: 18 GSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYSVT-SPKXSPTSPKYSPTS-P 75
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 76 KYSPTSPKYSPTSPKYSPTSPKYSPTSP 103
[205][TOP]
>UniRef100_UPI00006A20E2 DNA-directed RNA polymerase II subunit RPB1 (EC 2.7.7.6) (RNA
polymerase II subunit B1) (DNA-directed RNA polymerase
II subunit A) (DNA-directed RNA polymerase III largest
subunit). n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI00006A20E2
Length = 162
Score = 59.7 bits (143), Expect = 1e-07
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 SPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 359
SPSY SP+ S + + SP ++PTS P YSPSSP Y+P+SP YSPTSP YS
Sbjct: 7 SPSYTPSSPSYSPSSPSYSPTSP-----KYTPTS-PSYSPSSPEYTPTSPKYSPTSPKYS 60
Query: 360 PTSP 371
PTSP
Sbjct: 61 PTSP 64
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 46 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPVYTPTSPKY 101
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 102 SPTSPTYSPTSPKYSPTSPTYSPTSP 127
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 14 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 68
Query: 363 TSP 371
TSP
Sbjct: 69 TSP 71
Score = 54.3 bits (129), Expect = 4e-06
Identities = 43/84 (51%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 77 TPKYSPTSPT---YSPTSPVYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 127
Query: 309 G---YSPSSPGYSPTSPGYSPTSP 371
YSP+SPGYSPTSP YS TSP
Sbjct: 128 KGSTYSPTSPGYSPTSPTYSLTSP 151
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 70 SPTY--SPTTPKYSPTSPT-YSPT--SPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 124
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 125 TSPKGSTYSPTSPGYSPTSP 144
[206][TOP]
>UniRef100_Q58EF0 Polr2a protein (Fragment) n=2 Tax=Danio rerio RepID=Q58EF0_DANRE
Length = 161
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/86 (45%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGY 293
TP S T SP Y SP ++SP +SPTS SP Y
Sbjct: 47 TPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPT--SPTYSPTSPTYTPTSPKY 102
Query: 294 SPSSPGYSPSSPGYSPTSPGYSPTSP 371
SP+SP YSP+SP YSPTSP YSPTSP
Sbjct: 103 SPTSPTYSPTSPKYSPTSPTYSPTSP 128
Score = 58.9 bits (141), Expect = 2e-07
Identities = 33/60 (55%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Frame = +3
Query: 219 SPT---NDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
SPT + +SP ++SPTS SP YSPSSP Y+P+SP YSPTSP YSPTSP
Sbjct: 8 SPTYTPSSPSYSP--SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSP 65
Score = 58.5 bits (140), Expect = 2e-07
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 362
SPSY S + SPT+ +++P ++SP SSP Y+P+SP YSP+SP YSPTSP YSP
Sbjct: 15 SPSYSPS-SPSYSPTSP-KYTPT--SPSYSP-SSPEYTPTSPKYSPTSPKYSPTSPKYSP 69
Query: 363 TSP 371
TSP
Sbjct: 70 TSP 72
Score = 53.5 bits (127), Expect = 7e-06
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSP---- 329
SP+Y SP + SPT+ +SP ++PTS SP YSP+SP YSP+SP
Sbjct: 71 SPTY--SPTTPKYSPTSPT-YSPT--SPTYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSP 125
Query: 330 ------GYSPTSPGYSPTSP 371
YSPTSPGYSPTSP
Sbjct: 126 TSPKGSTYSPTSPGYSPTSP 145
Score = 53.1 bits (126), Expect = 9e-06
Identities = 41/81 (50%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYM-LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSP 308
TP SP S T SP+Y SP + SPT+ +SP +SPTS P YSP+SP
Sbjct: 78 TPKYSPTSPT---YSPTSPTYTPTSP--KYSPTSPT-YSPT--SPKYSPTS-PTYSPTSP 128
Query: 309 G---YSPSSPGYSPTSPGYSP 362
YSP+SPGYSPTSP YSP
Sbjct: 129 KGSTYSPTSPGYSPTSPTYSP 149
[207][TOP]
>UniRef100_Q56Z04 DNA-directed RNA polymerase II largest chain (Fragment) n=1
Tax=Arabidopsis thaliana RepID=Q56Z04_ARATH
Length = 99
Score = 59.7 bits (143), Expect = 1e-07
Identities = 33/55 (60%), Positives = 37/55 (67%)
Frame = +3
Query: 207 NLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 371
N RLSP SPY SPTS P YSP+SP YSP+SP YSP+SP YSP+SP
Sbjct: 3 NARLSPA-----SPY------SPTS-PNYSPTSPSYSPTSPSYSPSSPTYSPSSP 45
Score = 55.1 bits (131), Expect = 2e-06
Identities = 36/70 (51%), Positives = 41/70 (58%), Gaps = 13/70 (18%)
Frame = +3
Query: 198 LSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP-------------GYS 338
LSP SPT+ +SP ++SPTS P YSPSSP YSPSSP GYS
Sbjct: 6 LSPASPYSPTSP-NYSPT--SPSYSPTS-PSYSPSSPTYSPSSPYSSGASPDYSPSAGYS 61
Query: 339 PTSPGYSPTS 368
PT PGYSP+S
Sbjct: 62 PTLPGYSPSS 71
[208][TOP]
>UniRef100_Q1WKU3 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila orena RepID=Q1WKU3_DROOR
Length = 750
Score = 59.7 bits (143), Expect = 1e-07
Identities = 55/153 (35%), Positives = 76/153 (49%), Gaps = 30/153 (19%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P T
Sbjct: 591 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGAAMFIGGGSTPSMTPPM-T 649
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS-------SPGYSPSSPGYSP 320
P+ + +P Y SP P + + +P GG +FSP++ SP +SP+ PG SP
Sbjct: 650 PW-DNCNTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 700
Query: 321 SSPG----------------YSPTSPGYSPTSP 371
SSPG YSPTSP Y+ +SP
Sbjct: 701 SSPGPSMSPYFPASPSVSPSYSPTSPNYTASSP 733
[209][TOP]
>UniRef100_C6F1F5 RNA polymerase II (Fragment) n=1 Tax=Plasmodium fragile
RepID=C6F1F5_PLAFR
Length = 210
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/69 (52%), Positives = 48/69 (69%)
Frame = +3
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
YH ++SP Y ++ + + SPT+ ++SP + PTS P YSP+SP YSP+SP YSPT
Sbjct: 48 YHS-VVSPVYSVT-SPKYSPTSP-KYSPT--SPQYMPTS-PKYSPTSPKYSPTSPKYSPT 101
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 102 SPQYSPTSP 110
Score = 55.5 bits (132), Expect = 2e-06
Identities = 32/67 (47%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +3
Query: 174 GMMSPSYMLSPNLRLSPTND-AQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP 350
G+ P SP SPTN + +P + M + SP YS +SP YSP+SP YSPTSP
Sbjct: 21 GLNDPKSFYSPT---SPTNQLGEMNPNM--MKYHSVVSPVYSVTSPKYSPTSPKYSPTSP 75
Query: 351 GYSPTSP 371
Y PTSP
Sbjct: 76 QYMPTSP 82
[210][TOP]
>UniRef100_C6F1F3 RNA polymerase II (Fragment) n=1 Tax=Plasmodium cynomolgi
RepID=C6F1F3_9APIC
Length = 225
Score = 59.3 bits (142), Expect = 1e-07
Identities = 36/69 (52%), Positives = 48/69 (69%)
Frame = +3
Query: 165 YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 344
YH ++SP Y ++ + + SPT+ ++SP + PTS P YSP+SP YSP+SP YSPT
Sbjct: 48 YHS-VVSPVYSVT-SPKYSPTSP-KYSPT--SPKYLPTS-PKYSPTSPKYSPTSPKYSPT 101
Query: 345 SPGYSPTSP 371
SP YSPTSP
Sbjct: 102 SPKYSPTSP 110
[211][TOP]
>UniRef100_C6F0B0 RNA polymerase II (Fragment) n=1 Tax=Plasmodium falciparum
RepID=C6F0B0_PLAFA
Length = 188
Score = 59.3 bits (142), Expect = 1e-07
Identities = 34/65 (52%), Positives = 43/65 (66%)
Frame = +3
Query: 177 MMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 356
+MSP Y ++ + + SPT+ +SPTS P YSP+SP YSP+SP YSPTSP Y
Sbjct: 35 VMSPVYSVT-SPKYSPTSPK----------YSPTS-PKYSPTSPKYSPTSPKYSPTSPKY 82
Query: 357 SPTSP 371
SPTSP
Sbjct: 83 SPTSP 87
[212][TOP]
>UniRef100_B9PMD7 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
RepID=B9PMD7_TOXGO
Length = 1892
Score = 58.5 bits (140), Expect = 2e-07
Identities = 38/80 (47%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 138 GRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS--SPGYSPSSPG 311
GR+P+S MSP + S + SPT+ Q S SPTS SP YSP+SP
Sbjct: 1716 GRTPLSPFSPSNNPMSPHFSASTSY--SPTSPVQQSNPT-----SPTSPYSPAYSPTSPR 1768
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPT YSP SP
Sbjct: 1769 YSPTSPMYSPTFAPYSPQSP 1788
Score = 53.9 bits (128), Expect = 5e-06
Identities = 55/163 (33%), Positives = 74/163 (45%), Gaps = 40/163 (24%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGL----DFGMTPGRSPISG---- 158
NIM+GQL P+GTG + +++E LK+A +DGL +F G SP S
Sbjct: 1464 NIMMGQLCPLGTGYFDVLIDEEKLKDA-----SHNLDGLGGAGEFDGGVGTSPTSSDPLV 1518
Query: 159 ---------TPYHEGMMSP--------SYMLSPNLRLSP----TNDAQFSPYVGGMAFSP 275
+P+ + SP S+ SP LSP TN + +GG FSP
Sbjct: 1519 ITPDGSFTPSPHLNSVFSPMPFSTVYSSFAASPANPLSPTTLGTNAGVDTQQLGG-KFSP 1577
Query: 276 TSSPGYSPSSP-----GYSPSSPGYSPTSPG------YSPTSP 371
T SP+SP +SP +P SP SP +SPTSP
Sbjct: 1578 TQQTPRSPTSPLSPLSCFSPRNP-LSPLSPSGPPGGVFSPTSP 1619
[213][TOP]
>UniRef100_B6KEC6 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii ME49
RepID=B6KEC6_TOXGO
Length = 1892
Score = 58.5 bits (140), Expect = 2e-07
Identities = 38/80 (47%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 138 GRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS--SPGYSPSSPG 311
GR+P+S MSP + S + SPT+ Q S SPTS SP YSP+SP
Sbjct: 1716 GRTPLSPFSPSNNPMSPHFSASTSY--SPTSPVQQSNPT-----SPTSPYSPAYSPTSPR 1768
Query: 312 YSPSSPGYSPTSPGYSPTSP 371
YSP+SP YSPT YSP SP
Sbjct: 1769 YSPTSPMYSPTFAPYSPQSP 1788
Score = 53.9 bits (128), Expect = 5e-06
Identities = 55/163 (33%), Positives = 74/163 (45%), Gaps = 40/163 (24%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGL----DFGMTPGRSPISG---- 158
NIM+GQL P+GTG + +++E LK+A +DGL +F G SP S
Sbjct: 1464 NIMMGQLCPLGTGYFDVLIDEEKLKDA-----SHNLDGLGGAGEFDGGVGTSPTSSDPLV 1518
Query: 159 ---------TPYHEGMMSP--------SYMLSPNLRLSP----TNDAQFSPYVGGMAFSP 275
+P+ + SP S+ SP LSP TN + +GG FSP
Sbjct: 1519 ITPDGSFTPSPHLNSVFSPMPFSTVYSSFAASPANPLSPTTLGTNAGVDTQQLGG-KFSP 1577
Query: 276 TSSPGYSPSSP-----GYSPSSPGYSPTSPG------YSPTSP 371
T SP+SP +SP +P SP SP +SPTSP
Sbjct: 1578 TQQTPRSPTSPLSPLSCFSPRNP-LSPLSPSGPPGGVFSPTSP 1619
[214][TOP]
>UniRef100_Q6ZJR1 DNA-directed RNA polymerase largest chain-like protein n=1
Tax=Oryza sativa Japonica Group RepID=Q6ZJR1_ORYSJ
Length = 138
Score = 57.8 bits (138), Expect = 4e-07
Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Frame = +3
Query: 183 SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS---------SPGYSPSSPGYSPSSPGY 335
SP+Y SP SP+ + + Y A+SP+S SP YSP+SP YSP+SP Y
Sbjct: 19 SPNY--SPT---SPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNYSPTSPTYSPTSPSY 73
Query: 336 SPTSPGYSPTSP 371
S SP YSPTSP
Sbjct: 74 SQPSPSYSPTSP 85
Score = 55.8 bits (133), Expect = 1e-06
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Frame = +3
Query: 132 TPGRSPISGTPYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS--------SP 287
+P SP S T + SP+Y SPT+ + P ++SPTS SP
Sbjct: 46 SPRLSPYSQTSPNYSPTSPTY--------SPTSPSYSQP---SPSYSPTSPYTTSGGPSP 94
Query: 288 GYSPSSPGYSPSSPGYSPTSPGYSPTS 368
YSP+SP YSPS YSPT+PGYSP+S
Sbjct: 95 DYSPTSPNYSPSG-SYSPTAPGYSPSS 120
Score = 53.9 bits (128), Expect = 5e-06
Identities = 38/73 (52%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Frame = +3
Query: 183 SPSYMLSPNL-RLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP--- 350
SPS+ SP+ RLSP + Q SP +SPTS P YSP+SP YS SP YSPTSP
Sbjct: 37 SPSHAYSPSSPRLSPYS--QTSPN-----YSPTS-PTYSPTSPSYSQPSPSYSPTSPYTT 88
Query: 351 ------GYSPTSP 371
YSPTSP
Sbjct: 89 SGGPSPDYSPTSP 101
[215][TOP]
>UniRef100_UPI0000E241DC PREDICTED: hypothetical protein n=1 Tax=Pan troglodytes
RepID=UPI0000E241DC
Length = 1156
Score = 57.0 bits (136), Expect = 6e-07
Identities = 29/66 (43%), Positives = 36/66 (54%)
Frame = +3
Query: 174 GMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 353
G++ PS +P SP +D+Q + + SP Y P SPGY P SPGY P SPG
Sbjct: 701 GLVPPSPEFAPR---SPESDSQSPEF-------ESQSPRYEPQSPGYEPRSPGYEPRSPG 750
Query: 354 YSPTSP 371
Y P SP
Sbjct: 751 YEPRSP 756
[216][TOP]
>UniRef100_Q1WKU4 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila erecta RepID=Q1WKU4_DROER
Length = 760
Score = 56.6 bits (135), Expect = 8e-07
Identities = 57/173 (32%), Positives = 72/173 (41%), Gaps = 50/173 (28%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSP---- 149
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P
Sbjct: 591 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGAAMFIGGGSTPSMTPPMTP 650
Query: 150 --------ISGTPYHEGMMSPSYMLSPNLRLSPTNDAQ---------------------F 242
P H M+P P+ S +DA
Sbjct: 651 WANCNTPRYFSPPGHVSAMTPG---GPSFSPSAASDASGMSPSWSPAHPGSSPSSPGPSM 707
Query: 243 SPYVGGM-----AFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPGYSPTSP 371
SPY ++SPTS P Y+ SSPG YSPSSP YSPTSP Y+ SP
Sbjct: 708 SPYFPASPSVSPSYSPTS-PNYTASSPGGASPNYSPSSPNYSPTSPLYASASP 759
[217][TOP]
>UniRef100_Q9AXN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Botryocladia
uvarioides RepID=Q9AXN1_9FLOR
Length = 1712
Score = 56.2 bits (134), Expect = 1e-06
Identities = 58/198 (29%), Positives = 75/198 (37%), Gaps = 75/198 (37%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGM----------------- 131
NI+LGQLAP+GTG + LN++ML+ AIE + P+ D D M
Sbjct: 1388 NIVLGQLAPVGTGSFKMMLNEKMLQQAIETE-PAQQDAADGAMDQSGTNSFDMAWSPARG 1446
Query: 132 --TPG-RSPISG--TP----YHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT-- 278
TPG P+ G TP + M +PS M S S N QFSP +FSP+
Sbjct: 1447 DATPGLHRPMDGRTTPGLRTGYTPMWAPSRMGSTRGGPSAFNVQQFSPSADEASFSPSPA 1506
Query: 279 -----------------------------------------------SSPGYSPSSPGYS 317
+SP Y P SPG
Sbjct: 1507 TPGNFGQNANAYTPLQSPRGDYMPPMSPGGAASPYVSASPGRASPYATSPAY-PQSPGSY 1565
Query: 318 PSSPGYSPTSPGYSPTSP 371
+ G++P SP Y TSP
Sbjct: 1566 NAGSGFAPASPAYKVTSP 1583
[218][TOP]
>UniRef100_Q1WKU0 Putative RNA polymerase II 215 kD subunit (Fragment) n=2
Tax=melanogaster subgroup RepID=Q1WKU0_DROYA
Length = 766
Score = 56.2 bits (134), Expect = 1e-06
Identities = 35/82 (42%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +3
Query: 138 GRSPISGTPYHEGMM--SPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPT--SSPGYSPSS 305
G SP S +P H G SP +SP SP+ +SP S +SP YSPSS
Sbjct: 686 GMSP-SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSS 744
Query: 306 PGYSPSSPGYSPTSPGYSPTSP 371
P YSP+SP Y+ SP Y+ T+P
Sbjct: 745 PNYSPTSPLYASASPRYASTTP 766
Score = 55.8 bits (133), Expect = 1e-06
Identities = 50/135 (37%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L S M G + G TP +P T
Sbjct: 591 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGAAMFIGGGSTPSMTPPM-T 649
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP P + + +P GG +FSP+++ S SP +SP+ PG SP
Sbjct: 650 PW-VNCNTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 700
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 701 SSPGPSMSPYFPASP 715
[219][TOP]
>UniRef100_UPI0001B7BF92 zinc finger protein 768 n=1 Tax=Rattus norvegicus
RepID=UPI0001B7BF92
Length = 570
Score = 55.5 bits (132), Expect = 2e-06
Identities = 28/66 (42%), Positives = 33/66 (50%)
Frame = +3
Query: 174 GMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 353
G + PS +P SP +D Q + + SPGY P SPGY P SP Y P SPG
Sbjct: 94 GFVPPSPEFAPR---SPESDPQSPEFESQSSRYEPQSPGYDPKSPGYEPGSPRYEPKSPG 150
Query: 354 YSPTSP 371
Y SP
Sbjct: 151 YGSKSP 156
[220][TOP]
>UniRef100_Q1WKU2 Putative RNA polymerase II 215 kD subunit (Fragment) n=1
Tax=Drosophila simulans RepID=Q1WKU2_DROSI
Length = 746
Score = 54.7 bits (130), Expect = 3e-06
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Frame = +3
Query: 3 NIMLGQLAPIGTGECALYLNDEMLKNAIELQ--LPSYMDG-----LDFGMTPGRSPISGT 161
NI++GQL +GTG L L+ E + IE+ L + M G + G TP +P T
Sbjct: 591 NIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAAMFIGGGSTPSMTPPM-T 649
Query: 162 PYHEGMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 341
P+ +P Y SP P + + +P GG +FSP+++ S SP +SP+ PG SP
Sbjct: 650 PW-VNCNTPRYF-SP-----PGHVSAMTP--GGPSFSPSAASDASGMSPSWSPAHPGSSP 700
Query: 342 TSPG-----YSPTSP 371
+SPG Y P SP
Sbjct: 701 SSPGPSMSPYFPASP 715
[221][TOP]
>UniRef100_UPI0000F3065A UPI0000F3065A related cluster n=1 Tax=Bos taurus
RepID=UPI0000F3065A
Length = 540
Score = 53.9 bits (128), Expect = 5e-06
Identities = 32/66 (48%), Positives = 36/66 (54%)
Frame = +3
Query: 174 GMMSPSYMLSPNLRLSPTNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 353
G + PS +P SP +D+Q SP F P SP Y P SPGY P SPGY P SPG
Sbjct: 92 GFVPPSPEFAPR---SPESDSQ-SP-----DFEP-QSPRYEPQSPGYEPKSPGYEPRSPG 141
Query: 354 YSPTSP 371
Y SP
Sbjct: 142 YGTQSP 147
[222][TOP]
>UniRef100_A7NVN8 Chromosome chr18 scaffold_1, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7NVN8_VITVI
Length = 89
Score = 53.9 bits (128), Expect = 5e-06
Identities = 32/66 (48%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Frame = +3
Query: 189 SYMLSPNLRLSPTNDAQFSPYVGGMAFSPTS------SPGYSPSSPGYSPSSPGYSPTSP 350
SY SP +SP +SPTS SP YSPSSP YSPS+ GYSP++P
Sbjct: 10 SYSCSPTSPSYSPTSPSYSP--ASPTYSPTSPYNSGVSPDYSPSSPQYSPSA-GYSPSAP 66
Query: 351 GYSPTS 368
GYSP+S
Sbjct: 67 GYSPSS 72