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[1][TOP]
>UniRef100_B9HS61 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9HS61_POPTR
Length = 324
Score = 187 bits (475), Expect = 3e-46
Identities = 93/116 (80%), Positives = 104/116 (89%), Gaps = 1/116 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPGMPVQGGI IKRSLD ++ASC +YSEPPRLVHRLDRDCSGILVMGRTQTSATVLH
Sbjct: 49 KPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 108
Query: 183 SIFREKTSSAS-DDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+IFREKT +AS DD+G + R+LQRKY ALVIG PRRP+GL++A LGKVVVDNGKSD
Sbjct: 109 AIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSD 164
[2][TOP]
>UniRef100_UPI0001982E23 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001982E23
Length = 476
Score = 174 bits (442), Expect = 2e-42
Identities = 87/116 (75%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+PVQGGI IKRSLD +AA+ L+Y+ SEPPRLVHRLDRD SGIL+MGRTQTSAT+LH
Sbjct: 198 KPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILH 257
Query: 183 SIFREKTSSAS-DDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
SIFREKT AS +D+ T+ R+LQR+Y ALVIG PRRPRGL++A LGKVVVD+GKS+
Sbjct: 258 SIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSE 313
[3][TOP]
>UniRef100_B9RY90 Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis
RepID=B9RY90_RICCO
Length = 536
Score = 174 bits (442), Expect = 2e-42
Identities = 87/116 (75%), Positives = 99/116 (85%), Gaps = 1/116 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPGMPVQGGI IK S D +AASCL Y+YSEPPRLVHRLDRD SGILVMGRTQTS VLH
Sbjct: 259 KPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMVLH 318
Query: 183 SIFREKTSSASD-DLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
S+FREKT +AS+ D+G R+LQRKY ALVIG PRR +G+++A LGKVVVD+GKSD
Sbjct: 319 SVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSD 374
[4][TOP]
>UniRef100_A7P9Q6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9Q6_VITVI
Length = 340
Score = 174 bits (442), Expect = 2e-42
Identities = 87/116 (75%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+PVQGGI IKRSLD +AA+ L+Y+ SEPPRLVHRLDRD SGIL+MGRTQTSAT+LH
Sbjct: 72 KPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILH 131
Query: 183 SIFREKTSSAS-DDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
SIFREKT AS +D+ T+ R+LQR+Y ALVIG PRRPRGL++A LGKVVVD+GKS+
Sbjct: 132 SIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSE 187
[5][TOP]
>UniRef100_Q9LT72 RNA pseudourine synthase 4, mitochondrial n=1 Tax=Arabidopsis
thaliana RepID=PUS4_ARATH
Length = 477
Score = 147 bits (372), Expect = 3e-34
Identities = 78/117 (66%), Positives = 93/117 (79%), Gaps = 2/117 (1%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG IK S+D +AASCLK++ SE PRLVHRLDRDCSG+LV+ RTQT+ATVLH
Sbjct: 197 KPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLH 256
Query: 183 SIFREKTSSASDDLGTENRV--LQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
SIFREKT+ AS G + V L+RKY ALVIGCP R RG ++A L KVVVD+GKS+
Sbjct: 257 SIFREKTTGAS-AYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSE 312
[6][TOP]
>UniRef100_B9G227 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9G227_ORYSJ
Length = 465
Score = 139 bits (350), Expect = 1e-31
Identities = 73/115 (63%), Positives = 92/115 (80%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPGMPVQGG+ IK S+DV+A S + SE PRLVHRLDRDCSGILV+GR Q S ++LH
Sbjct: 190 KPPGMPVQGGVGIKNSIDVLA-SMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLH 248
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+IFREKT+ A D GT++ VLQRKY ALVIG PR P+GL++A L K+++ +GKS+
Sbjct: 249 AIFREKTADALAD-GTQH-VLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSE 301
[7][TOP]
>UniRef100_B8BCS6 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BCS6_ORYSI
Length = 465
Score = 139 bits (350), Expect = 1e-31
Identities = 73/115 (63%), Positives = 92/115 (80%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPGMPVQGG+ IK S+DV+A S + SE PRLVHRLDRDCSGILV+GR Q S ++LH
Sbjct: 190 KPPGMPVQGGVGIKNSIDVLA-SMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLH 248
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+IFREKT+ A D GT++ VLQRKY ALVIG PR P+GL++A L K+++ +GKS+
Sbjct: 249 AIFREKTADALAD-GTQH-VLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSE 301
[8][TOP]
>UniRef100_Q69K07 RNA pseudourine synthase 4, mitochondrial n=1 Tax=Oryza sativa
Japonica Group RepID=PUS4_ORYSJ
Length = 448
Score = 139 bits (350), Expect = 1e-31
Identities = 73/115 (63%), Positives = 92/115 (80%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPGMPVQGG+ IK S+DV+A S + SE PRLVHRLDRDCSGILV+GR Q S ++LH
Sbjct: 190 KPPGMPVQGGVGIKNSIDVLA-SMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLH 248
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+IFREKT+ A D GT++ VLQRKY ALVIG PR P+GL++A L K+++ +GKS+
Sbjct: 249 AIFREKTADALAD-GTQH-VLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSE 301
[9][TOP]
>UniRef100_B6U2M4 RNA binding protein n=1 Tax=Zea mays RepID=B6U2M4_MAIZE
Length = 439
Score = 137 bits (346), Expect = 3e-31
Identities = 72/115 (62%), Positives = 93/115 (80%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPGMPVQGG+ IK S+D++A + SE PRLVHRLDRDCSG+LV+GRTQ SA+++H
Sbjct: 187 KPPGMPVQGGVGIKNSIDILAPM-FENGSSEVPRLVHRLDRDCSGVLVLGRTQFSASLMH 245
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+IFREKT+ A D GT+ +VLQRKY ALVIG PR P+GL++A L KVV+ +G+S+
Sbjct: 246 AIFREKTADALGD-GTQ-QVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSE 298
[10][TOP]
>UniRef100_C4J8T2 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C4J8T2_MAIZE
Length = 272
Score = 128 bits (321), Expect = 2e-28
Identities = 68/111 (61%), Positives = 89/111 (80%)
Frame = +3
Query: 15 MPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFR 194
MPVQGG+ IK S+D++A + SE PRLVHRLDRDCSG+LV+GRTQ SA+++H+IFR
Sbjct: 1 MPVQGGVGIKNSIDILAPM-FENGSSEVPRLVHRLDRDCSGVLVLGRTQFSASLMHAIFR 59
Query: 195 EKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
EKT+ A D GT+ +VLQRKY ALVIG PR P+GL++A L KVV+ +G+S+
Sbjct: 60 EKTADALGD-GTQ-QVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSE 108
[11][TOP]
>UniRef100_Q5XET6-2 Isoform 2 of RNA pseudourine synthase 3, mitochondrial n=1
Tax=Arabidopsis thaliana RepID=Q5XET6-2
Length = 326
Score = 104 bits (259), Expect = 3e-21
Identities = 53/117 (45%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPP +PV+G + I S+D +AA+ L + E PRLVHRLDR+ SG+LVMGRT+ S LH
Sbjct: 41 KPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLH 100
Query: 183 SIFRE--KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
S+F + +S+ + ++Y ALVIG P+ GL++A L KV++D+GK+D
Sbjct: 101 SVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTD 157
[12][TOP]
>UniRef100_Q5XET6 RNA pseudourine synthase 3, mitochondrial n=1 Tax=Arabidopsis
thaliana RepID=PUS3_ARATH
Length = 478
Score = 104 bits (259), Expect = 3e-21
Identities = 53/117 (45%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPP +PV+G + I S+D +AA+ L + E PRLVHRLDR+ SG+LVMGRT+ S LH
Sbjct: 193 KPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLH 252
Query: 183 SIFRE--KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
S+F + +S+ + ++Y ALVIG P+ GL++A L KV++D+GK+D
Sbjct: 253 SVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTD 309
[13][TOP]
>UniRef100_A9RZN1 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9RZN1_PHYPA
Length = 283
Score = 102 bits (255), Expect = 1e-20
Identities = 55/115 (47%), Positives = 70/115 (60%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG D+ +SLD + + L Y Y+E PRLVHRLD++ SG LV+GRT S L
Sbjct: 10 KPSGLAVQGGSDVVKSLDSMMEAALSYNYNEGPRLVHRLDKETSGALVLGRTHQSTVFLQ 69
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
++ R KT S G R Y ALVIG P + G ++A L KVV D+GK D
Sbjct: 70 ALLRNKTEKISQAPG-------RCYLALVIGVPEKKEGRISAPLAKVVSDSGKLD 117
[14][TOP]
>UniRef100_UPI0001984024 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984024
Length = 479
Score = 99.8 bits (247), Expect = 8e-20
Identities = 49/117 (41%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPP +P++G + + S+D +AA+ L ++Y E P+LVHRLDR+ SG+L+MGRT+ S LH
Sbjct: 193 KPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLH 252
Query: 183 SIFRE--KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+F + K S S ++Y ALVIG P++ G++ A L KV++D+GK++
Sbjct: 253 WLFSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTE 309
[15][TOP]
>UniRef100_A7Q499 Chromosome chr9 scaffold_49, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q499_VITVI
Length = 481
Score = 99.8 bits (247), Expect = 8e-20
Identities = 49/117 (41%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPP +P++G + + S+D +AA+ L ++Y E P+LVHRLDR+ SG+L+MGRT+ S LH
Sbjct: 195 KPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLH 254
Query: 183 SIFRE--KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+F + K S S ++Y ALVIG P++ G++ A L KV++D+GK++
Sbjct: 255 WLFSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTE 311
[16][TOP]
>UniRef100_A3BUX1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BUX1_ORYSJ
Length = 509
Score = 97.1 bits (240), Expect = 5e-19
Identities = 51/119 (42%), Positives = 78/119 (65%), Gaps = 4/119 (3%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPP +P++G + + S+DV+AA+ L Y E P+LVHRLDR+ SG+L+ GRT+ S T LH
Sbjct: 225 KPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLH 284
Query: 183 SIFRE----KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+F KT+S + E ++Y ALVIG P+ G+++A L KV++D+GK++
Sbjct: 285 WLFTSVNLAKTNSQVWNAACE--AYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAE 341
[17][TOP]
>UniRef100_Q0J4D4 RNA pseudourine synthase 3, mitochondrial n=2 Tax=Oryza sativa
RepID=PUS3_ORYSJ
Length = 475
Score = 97.1 bits (240), Expect = 5e-19
Identities = 51/119 (42%), Positives = 78/119 (65%), Gaps = 4/119 (3%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPP +P++G + + S+DV+AA+ L Y E P+LVHRLDR+ SG+L+ GRT+ S T LH
Sbjct: 191 KPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLH 250
Query: 183 SIFRE----KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+F KT+S + E ++Y ALVIG P+ G+++A L KV++D+GK++
Sbjct: 251 WLFTSVNLAKTNSQVWNAACE--AYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAE 307
[18][TOP]
>UniRef100_B9SLG9 Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis
RepID=B9SLG9_RICCO
Length = 468
Score = 95.9 bits (237), Expect = 1e-18
Identities = 48/117 (41%), Positives = 76/117 (64%), Gaps = 2/117 (1%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPP +PV+G + + S+D +AA+ L Y+Y E P+LV RLDR+ SG+L+MGRT+ S L
Sbjct: 184 KPPRLPVKGNLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLLLMGRTKESIDHLQ 243
Query: 183 SIFRE--KTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+F + K++S + ++Y ALVIG P+ GL+ A L KV++++GK++
Sbjct: 244 WLFSDVNKSNSRCKAWNDACKATYQRYWALVIGSPKEKEGLIRAPLSKVLLNDGKTE 300
[19][TOP]
>UniRef100_A8LM87 Pseudouridine synthase n=1 Tax=Dinoroseobacter shibae DFL 12
RepID=A8LM87_DINSH
Length = 348
Score = 73.9 bits (180), Expect = 5e-12
Identities = 45/106 (42%), Positives = 61/106 (57%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+PVQGG +R +D +A + L++E EPPRLVHRLD+D SG+L+M RT+ SA L
Sbjct: 106 KPAGLPVQGGSGQERHIDGMAEA-LQFELDEPPRLVHRLDKDTSGVLLMARTRRSAAALT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR R ++ Y A V G P+ G V +L K
Sbjct: 165 AAFRA-------------RQTRKIYWAAVAGVPQPQLGTVRYALMK 197
[20][TOP]
>UniRef100_A9DCN2 Pseudouridine synthase n=1 Tax=Hoeflea phototrophica DFL-43
RepID=A9DCN2_9RHIZ
Length = 329
Score = 72.4 bits (176), Expect = 1e-11
Identities = 43/112 (38%), Positives = 64/112 (57%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R++D + + + + E PRLVHRLDRD +G+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRNVDDMLEAW-RNKKGEKPRLVHRLDRDTAGVLVVARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+T+ ++ Y ALV G PR G ++ L K D+G
Sbjct: 166 AAFRERTT-------------KKTYWALVTGVPRDREGKISTWLVKEATDDG 204
[21][TOP]
>UniRef100_A3JN53 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium HTCC2150
RepID=A3JN53_9RHOB
Length = 347
Score = 72.0 bits (175), Expect = 2e-11
Identities = 42/106 (39%), Positives = 61/106 (57%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+PVQGG KR +D ++ + L+++ E PRLVHRLD+D SG+L++ R Q SA+ L
Sbjct: 105 KPPGIPVQGGSGQKRHIDGLSEA-LRFDSDEKPRLVHRLDKDTSGVLLLARNQRSASELT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
++FR + S ++ Y A V G P G + L K
Sbjct: 164 AVFRSRES-------------RKIYWAAVGGVPHPKMGTIRFGLVK 196
[22][TOP]
>UniRef100_A7HWU2 Pseudouridine synthase n=1 Tax=Parvibaculum lavamentivorans DS-1
RepID=A7HWU2_PARL1
Length = 330
Score = 69.3 bits (168), Expect = 1e-10
Identities = 42/106 (39%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG +R LD + L ++ E PRLVHRLDRD SG+LV+ RT +A L
Sbjct: 106 KPVGLAVQGGTKTERHLDGML-DALIFDAKERPRLVHRLDRDTSGVLVLARTAKAAAALA 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F++K + Q+ Y ALV+G P +G + +L K
Sbjct: 165 QAFKQKDA-------------QKIYWALVVGVPVPRQGTIDLALSK 197
[23][TOP]
>UniRef100_B5J3B9 Pseudouridine synthase n=1 Tax=Octadecabacter antarcticus 307
RepID=B5J3B9_9RHOB
Length = 347
Score = 69.3 bits (168), Expect = 1e-10
Identities = 44/115 (38%), Positives = 60/115 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+P QGG R +D +A + L++ Y E PRLVHRLD+D SG+L++ RT+ +A L
Sbjct: 104 KPAGLPTQGGSKQLRHVDGMAEA-LRFGYDEKPRLVHRLDKDTSGVLILARTRMAAKSLT 162
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
FR + + ++ Y ALV G P G V L K GK D
Sbjct: 163 DAFRHRNT-------------EKIYWALVAGVPIPKLGSVKYGLVKQGGHGGKGD 204
[24][TOP]
>UniRef100_Q0FIH4 Pseudouridine synthase n=1 Tax=Roseovarius sp. HTCC2601
RepID=Q0FIH4_9RHOB
Length = 350
Score = 68.9 bits (167), Expect = 2e-10
Identities = 44/114 (38%), Positives = 63/114 (55%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+PVQGG +R +D +A + L+++Y E PRLVHRLD+D SG+L++ RT+ A L
Sbjct: 108 KPPGLPVQGGSKQERHVDGLAEA-LRFDYDEKPRLVHRLDKDTSGVLLLARTREIAQALT 166
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKS 344
R K + ++ Y A+V G P G + L K +GKS
Sbjct: 167 GAIRHKQT-------------RKIYWAVVAGVPTPYLGEIRFGLVK-APGHGKS 206
[25][TOP]
>UniRef100_B5KDF5 Pseudouridine synthase n=1 Tax=Octadecabacter antarcticus 238
RepID=B5KDF5_9RHOB
Length = 347
Score = 68.9 bits (167), Expect = 2e-10
Identities = 44/115 (38%), Positives = 60/115 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+P QGG R +D +A + L++ Y E PRLVHRLD+D SG+LV+ RT+ +A L
Sbjct: 104 KPAGLPTQGGSKQLRHVDGMAEA-LRFGYDERPRLVHRLDKDTSGVLVLARTRMAAKSLT 162
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
FR + + ++ Y ALV G P G + L K GK D
Sbjct: 163 EAFRHRNT-------------EKIYWALVAGVPIPKLGSIKYGLVKQGGHGGKGD 204
[26][TOP]
>UniRef100_A3S822 Pseudouridine synthase n=2 Tax=Sulfitobacter RepID=A3S822_9RHOB
Length = 349
Score = 68.2 bits (165), Expect = 3e-10
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGI-DIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVL 179
KPPG+PVQGG R +D +A L +E E PRLVHRLD+D SG+L+M RT++ A L
Sbjct: 105 KPPGLPVQGGSGQSDRHVDALA-DALMFELDEKPRLVHRLDKDTSGVLIMARTRSIAAAL 163
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR +R ++ Y A V G P G + L K
Sbjct: 164 TASFR-------------HRETRKIYWAAVAGVPHPRNGTIKFGLVK 197
[27][TOP]
>UniRef100_B9NL86 Pseudouridine synthase n=1 Tax=Rhodobacteraceae bacterium KLH11
RepID=B9NL86_9RHOB
Length = 347
Score = 67.8 bits (164), Expect = 4e-10
Identities = 41/106 (38%), Positives = 59/106 (55%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+PVQGG R +D ++ + L++ Y E PRLVHRLD+D SG+L+M RT+ +A L
Sbjct: 105 KPHGLPVQGGSGQTRHVDSLSEA-LRFGYDENPRLVHRLDKDTSGVLLMARTRDAAKALT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR + + ++ Y ALV G P G + L K
Sbjct: 164 AAFRHRNT-------------RKIYWALVAGVPTPYLGEIKTGLVK 196
[28][TOP]
>UniRef100_A3SK10 Pseudouridine synthase n=1 Tax=Roseovarius nubinhibens ISM
RepID=A3SK10_9RHOB
Length = 346
Score = 67.8 bits (164), Expect = 4e-10
Identities = 41/106 (38%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+PVQGG R +D +A + L+++ E PRLVHRLD+D SG+L++ RT+ A L
Sbjct: 104 KPPGLPVQGGSKQTRHVDGLAEA-LRFDLDEKPRLVHRLDKDTSGVLILARTRQMAADLT 162
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR + + ++ Y A V G P G V L K
Sbjct: 163 AAFRHRNT-------------RKIYWAAVAGVPLPRMGTVKYGLVK 195
[29][TOP]
>UniRef100_UPI0001903DB3 RNA-pseudouridine synthase protein, ribosomal large subunit C n=1
Tax=Rhizobium etli 8C-3 RepID=UPI0001903DB3
Length = 303
Score = 67.4 bits (163), Expect = 5e-10
Identities = 42/112 (37%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 61 KPPGIAVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLT 119
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 120 AAFRERDT-------------KKTYWALVKGVPRKHEDKISTWLVKEATADG 158
[30][TOP]
>UniRef100_B3PP13 Pseudouridine synthase n=1 Tax=Rhizobium etli CIAT 652
RepID=B3PP13_RHIE6
Length = 330
Score = 67.4 bits (163), Expect = 5e-10
Identities = 42/112 (37%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 108 KPPGIAVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLT 166
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 167 AAFRERDT-------------KKTYWALVKGVPRKHEDKISTWLVKEATADG 205
[31][TOP]
>UniRef100_A6U892 Pseudouridine synthase n=1 Tax=Sinorhizobium medicae WSM419
RepID=A6U892_SINMW
Length = 330
Score = 67.4 bits (163), Expect = 5e-10
Identities = 41/112 (36%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 109 KPPGLAVQGGSGVNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVIARTRGAAQQLT 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ + K +G
Sbjct: 168 AAFRERDT-------------KKTYWALVRGVPRKREDKISTWVVKEQTPDG 206
[32][TOP]
>UniRef100_Q0G6Y2 Pseudouridine synthase n=1 Tax=Fulvimarina pelagi HTCC2506
RepID=Q0G6Y2_9RHIZ
Length = 328
Score = 67.4 bits (163), Expect = 5e-10
Identities = 42/112 (37%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHRLDRD SGILV+ RT+ +AT L
Sbjct: 109 KPAGLAVQGGSGVARHVDDMLEAW-RNKKGEKPRLVHRLDRDTSGILVVARTRGAATALT 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
FRE+ + ++ Y A+V G P + G ++ L K +G
Sbjct: 168 KAFRERDT-------------KKLYWAVVKGVPAKKEGRISTYLKKEQTPDG 206
[33][TOP]
>UniRef100_D0CUP1 Ribosomal large subunit pseudouridine synthase C n=1
Tax=Silicibacter lacuscaerulensis ITI-1157
RepID=D0CUP1_9RHOB
Length = 347
Score = 67.4 bits (163), Expect = 5e-10
Identities = 42/106 (39%), Positives = 59/106 (55%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+PVQGG R +D +A + L++ Y E PRLVHRLD+D SG+L+M RT+ +A L
Sbjct: 105 KPHGLPVQGGSGQARHVDGLAEA-LRFGYDENPRLVHRLDKDTSGVLLMARTREAAKGLT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR + + ++ Y ALV G P G + L K
Sbjct: 164 AAFRHRNT-------------RKIYWALVAGVPTPYLGEIKTGLVK 196
[34][TOP]
>UniRef100_B7RL95 Pseudouridine synthase n=1 Tax=Roseobacter sp. GAI101
RepID=B7RL95_9RHOB
Length = 349
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGI-DIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVL 179
KPPG+PVQGG R +D +A L ++ E PRLVHRLD+D SG+L+M RT++ A L
Sbjct: 105 KPPGLPVQGGSGQSDRHVDALA-DALMFDLDEKPRLVHRLDKDTSGVLIMARTRSIAADL 163
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
S FR +R ++ Y A V G P G + L K
Sbjct: 164 TSSFR-------------HRQTRKIYWAAVAGVPHPKNGTIKFGLVK 197
[35][TOP]
>UniRef100_Q2K820 Pseudouridine synthase n=1 Tax=Rhizobium etli CFN 42
RepID=Q2K820_RHIEC
Length = 317
Score = 67.0 bits (162), Expect = 6e-10
Identities = 41/112 (36%), Positives = 62/112 (55%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ VQGG + R +D + + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 93 KPPGLAVQGGSGVARHIDQMLEAWISPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLT 151
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y +LV G PR+ ++ L K +G
Sbjct: 152 AAFRERDT-------------KKTYWSLVKGVPRKHEDKISTWLVKEPTADG 190
[36][TOP]
>UniRef100_Q1MG68 Pseudouridine synthase n=1 Tax=Rhizobium leguminosarum bv. viciae
3841 RepID=Q1MG68_RHIL3
Length = 330
Score = 67.0 bits (162), Expect = 6e-10
Identities = 42/112 (37%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 108 KPPGLAVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLT 166
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 167 AAFRERDT-------------KKTYWALVKGVPRKHEDKISTWLVKEPTADG 205
[37][TOP]
>UniRef100_C6AYR2 Pseudouridine synthase n=1 Tax=Rhizobium leguminosarum bv. trifolii
WSM1325 RepID=C6AYR2_RHILS
Length = 330
Score = 67.0 bits (162), Expect = 6e-10
Identities = 42/112 (37%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 108 KPPGLAVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLT 166
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 167 AAFRERDT-------------KKTYWALVKGVPRKHEDKISTWLVKEPTADG 205
[38][TOP]
>UniRef100_B5ZQP1 Pseudouridine synthase n=1 Tax=Rhizobium leguminosarum bv. trifolii
WSM2304 RepID=B5ZQP1_RHILW
Length = 329
Score = 66.6 bits (161), Expect = 8e-10
Identities = 42/112 (37%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 107 KPPGIAVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 166 AAFRERDT-------------KKTYWALVKGVPRKHEDKISTWLVKEPTADG 204
[39][TOP]
>UniRef100_A8TZH4 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199
RepID=A8TZH4_9PROT
Length = 331
Score = 66.2 bits (160), Expect = 1e-09
Identities = 40/107 (37%), Positives = 60/107 (56%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG I + +D A L ++ E PRLVHRLD+D SG+L++GR+ +A L
Sbjct: 109 KPAGLAVQGGSGITKHVDG-ALDGLMFDAKERPRLVHRLDKDTSGVLLVGRSYQAARRLT 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKV 323
FR K++ + Y ALV+G P+ G + ++GK+
Sbjct: 168 EAFRAKSA-------------MKIYWALVVGEPKPNAGSIEGAIGKL 201
[40][TOP]
>UniRef100_A3VYV2 Pseudouridine synthase n=1 Tax=Roseovarius sp. 217
RepID=A3VYV2_9RHOB
Length = 347
Score = 66.2 bits (160), Expect = 1e-09
Identities = 42/115 (36%), Positives = 60/115 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+PVQGG R +D +A + L++ E PRLVHRLD+D SG+L++ RT+ +A L
Sbjct: 105 KPPGLPVQGGSKQTRHVDGLAEA-LRFGAEEKPRLVHRLDKDTSGVLLLARTREAAKGLT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+ FR + + ++ Y A V G P G V L K K +
Sbjct: 164 AAFRHRNT-------------RKIYWAAVAGVPTPRMGTVRYGLVKAPGHGAKGE 205
[41][TOP]
>UniRef100_A3VF99 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium HTCC2654
RepID=A3VF99_9RHOB
Length = 350
Score = 65.9 bits (159), Expect = 1e-09
Identities = 41/115 (35%), Positives = 59/115 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+P QGG R +D +A L + Y + PRLVHRLD+D SG+L++ RT+ A L
Sbjct: 105 KPPGLPTQGGSKQTRHVDGLA-EVLTFGYDDKPRLVHRLDKDTSGVLLLARTRQVAKDLT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
FR + + ++ Y A+V G P +G V L K G+ +
Sbjct: 164 DAFRHRNT-------------RKIYWAVVAGVPLPRKGTVKWGLVKAPGHGGQGE 205
[42][TOP]
>UniRef100_Q92QE2 Pseudouridine synthase n=1 Tax=Sinorhizobium meliloti
RepID=Q92QE2_RHIME
Length = 330
Score = 65.5 bits (158), Expect = 2e-09
Identities = 41/112 (36%), Positives = 60/112 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 109 KPAGLAVQGGSGVNRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLT 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 168 AAFRERDT-------------KKTYWALVRGVPRKREDKISTWLVKEPTPDG 206
[43][TOP]
>UniRef100_A5FUW0 Pseudouridine synthase n=1 Tax=Acidiphilium cryptum JF-5
RepID=A5FUW0_ACICJ
Length = 324
Score = 65.1 bits (157), Expect = 2e-09
Identities = 39/107 (36%), Positives = 57/107 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ QGG I R LD + L+++ +E PRLVHRLDRD SG+LV+ R +A L
Sbjct: 104 KPAGLATQGGKGIARHLDGML-DALRFDAAERPRLVHRLDRDTSGVLVLARNAFAANRLA 162
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKV 323
+ FR R +++ Y A+V+G P G + L ++
Sbjct: 163 AAFR-------------GRDMEKTYWAIVVGLPIPMEGQIDLPLARI 196
[44][TOP]
>UniRef100_UPI000038423F COG0564: Pseudouridylate synthases, 23S RNA-specific n=1
Tax=Magnetospirillum magnetotacticum MS-1
RepID=UPI000038423F
Length = 324
Score = 64.7 bits (156), Expect = 3e-09
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +3
Query: 3 KPPGMPVQGGIDIK-RSLDV-VAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATV 176
KPPG+ VQGG + + LD + A C + P+LVHRLD+D SG+L++GRT +A+
Sbjct: 100 KPPGLAVQGGTGMADKHLDAWLDALCFG---AGRPKLVHRLDKDTSGVLLLGRTANAASK 156
Query: 177 LHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKV 323
L + F+ +++ ++ Y ALV G PR P+G + A L K+
Sbjct: 157 LAAAFKSRSA-------------RKCYWALVAGVPRYPQGRIDAPLAKL 192
[45][TOP]
>UniRef100_B8EL77 Pseudouridine synthase n=1 Tax=Methylocella silvestris BL2
RepID=B8EL77_METSB
Length = 349
Score = 64.7 bits (156), Expect = 3e-09
Identities = 42/106 (39%), Positives = 59/106 (55%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG ++R +D + AS L E + P LVHRLDRD SG+L++ +T+ A L
Sbjct: 103 KPYGLAVQGGSGMRRHIDGMLAS-LPNERGDRPVLVHRLDRDTSGVLLIAKTRKMAADLG 161
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
IFR +R Q+ Y ALV G P+ +G ++ L K
Sbjct: 162 EIFR-------------SRQAQKIYWALVEGVPKPAQGKISLFLAK 194
[46][TOP]
>UniRef100_B0CGF1 Pseudouridine synthase n=1 Tax=Brucella suis ATCC 23445
RepID=B0CGF1_BRUSI
Length = 326
Score = 64.7 bits (156), Expect = 3e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVLARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 166 ASFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG 204
[47][TOP]
>UniRef100_Q2CBL6 Pseudouridine synthase n=1 Tax=Oceanicola granulosus HTCC2516
RepID=Q2CBL6_9RHOB
Length = 348
Score = 64.7 bits (156), Expect = 3e-09
Identities = 42/106 (39%), Positives = 56/106 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+P QGG R +D ++A+ L + E PRLVHRLD+D SGIL++ RT+ +A L
Sbjct: 105 KPPGLPTQGGSRQTRHVDGLSAA-LTFGLEEKPRLVHRLDKDTSGILLLARTRAAAKGLT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R ++ Y A V G P G V L K
Sbjct: 164 DAFR-------------SRETRKIYWAAVAGVPHPRMGTVKYGLVK 196
[48][TOP]
>UniRef100_B6AVG3 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium HTCC2083
RepID=B6AVG3_9RHOB
Length = 347
Score = 64.7 bits (156), Expect = 3e-09
Identities = 37/106 (34%), Positives = 56/106 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+PVQGG R +D + L Y++ E P+LVHRLD+D SG+L++GRT+ + L
Sbjct: 105 KPAGLPVQGGTGHARHVDGLL-DALMYDFEERPKLVHRLDKDTSGVLILGRTRRATADLT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR + + ++ Y A + G P G + L K
Sbjct: 164 ASFRHRNT-------------RKIYWAAIAGVPNPRMGTIKYGLMK 196
[49][TOP]
>UniRef100_A9EHL2 Pseudouridine synthase n=2 Tax=Phaeobacter gallaeciensis
RepID=A9EHL2_9RHOB
Length = 348
Score = 64.7 bits (156), Expect = 3e-09
Identities = 43/114 (37%), Positives = 63/114 (55%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + +D ++A+ L+++ E PRLVHRLD+D SG+LV+ RT+ +A L
Sbjct: 106 KPAGLAVQGGSGTTKHVDGLSAA-LQFDAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKS 344
+ FR +R ++ Y ALV G P G + L K +GKS
Sbjct: 165 AAFR-------------HRATRKIYWALVAGVPTPYLGEIKCGLVK-APGHGKS 204
[50][TOP]
>UniRef100_UPI0001B489F4 pseudouridine synthase n=1 Tax=Brucella suis bv. 5 str. 513
RepID=UPI0001B489F4
Length = 326
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 166 ASFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG 204
[51][TOP]
>UniRef100_UPI0001B47D5C ribosomal large subunit pseudouridine synthase C n=1 Tax=Brucella
sp. 83/13 RepID=UPI0001B47D5C
Length = 326
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 166 ASFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG 204
[52][TOP]
>UniRef100_Q7CZ66 Pseudouridine synthase n=1 Tax=Agrobacterium tumefaciens str. C58
RepID=Q7CZ66_AGRT5
Length = 329
Score = 64.3 bits (155), Expect = 4e-09
Identities = 41/112 (36%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 108 KPAGIAVQGGSGVNRHIDGLLEAWTSPK-GEKPRLVHRLDRDTSGVLVVARTRGAAQKLT 166
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ + ++ L K +G
Sbjct: 167 AAFRERDT-------------KKTYWALVRGVPRKHQDKISTWLVKEQTPDG 205
[53][TOP]
>UniRef100_Q6I819 Pseudouridine synthase n=1 Tax=Brucella suis RepID=Q6I819_BRUSU
Length = 326
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 166 ASFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG 204
[54][TOP]
>UniRef100_Q2RQY9 Pseudouridine synthase n=1 Tax=Rhodospirillum rubrum ATCC 11170
RepID=Q2RQY9_RHORT
Length = 330
Score = 64.3 bits (155), Expect = 4e-09
Identities = 42/113 (37%), Positives = 57/113 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
K G+ VQGG LD + S + E PRLVHRLD+D SG+LV+ RTQ +A L
Sbjct: 108 KEAGLAVQGGTGTPHHLDGMLESLA--DGGETPRLVHRLDKDTSGVLVLARTQAAARALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGK 341
S FR +R + Y A+V+G P +G + +L KV G+
Sbjct: 166 SAFR-------------SREALKVYWAIVVGRPPMLQGTIKGALAKVAGGRGE 205
[55][TOP]
>UniRef100_B9JFK3 Pseudouridine synthase n=1 Tax=Agrobacterium radiobacter K84
RepID=B9JFK3_AGRRK
Length = 332
Score = 64.3 bits (155), Expect = 4e-09
Identities = 41/112 (36%), Positives = 60/112 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R LD + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 109 KPAGLAVQGGSGLTRHLDKMLEAWTSKK-GEKPRLVHRLDRDTSGVLVVARTRGAAQKLT 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y +LV G PR+ ++ L K +G
Sbjct: 168 AAFRERDT-------------KKTYWSLVKGVPRKHEDKISTWLVKEATADG 206
[56][TOP]
>UniRef100_A3PGP1 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides ATCC 17029
RepID=A3PGP1_RHOS1
Length = 346
Score = 64.3 bits (155), Expect = 4e-09
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDI-KRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVL 179
KPPG+P QGG +R +D + + LK+ Y E P+LVHRLD+D SG+LV+ RT A L
Sbjct: 104 KPPGLPSQGGSGQGERHVDGLTEA-LKFGYKERPKLVHRLDKDTSGVLVLARTDRVARAL 162
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR + + ++ Y ALV G P +G + +L K
Sbjct: 163 SESFRHRNT-------------RKIYWALVAGVPSPKQGSIKYALMK 196
[57][TOP]
>UniRef100_A9MB16 Pseudouridine synthase n=2 Tax=Brucella RepID=A9MB16_BRUC2
Length = 326
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 166 ASFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG 204
[58][TOP]
>UniRef100_C9VAF8 Pseudouridine synthase n=1 Tax=Brucella neotomae 5K33
RepID=C9VAF8_BRUNE
Length = 326
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 166 ASFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG 204
[59][TOP]
>UniRef100_B2S5L2 Pseudouridine synthase n=8 Tax=Brucella abortus RepID=B2S5L2_BRUA1
Length = 326
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 166 ASFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG 204
[60][TOP]
>UniRef100_C4WJL5 Pseudouridine synthase n=1 Tax=Ochrobactrum intermedium LMG 3301
RepID=C4WJL5_9RHIZ
Length = 326
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRHIDGMLEAW-RNKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 166 AAFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKDQTPDG 204
[61][TOP]
>UniRef100_C4IQR9 Pseudouridine synthase n=1 Tax=Brucella abortus str. 2308 A
RepID=C4IQR9_BRUAB
Length = 343
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 124 KPAGLAVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALT 182
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 183 ASFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG 221
[62][TOP]
>UniRef100_C7LBU6 Ribosomal large subunit pseudouridine synthase C n=11 Tax=Brucella
RepID=C7LBU6_BRUMC
Length = 326
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRHIDGMLEAW-RSKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 166 ASFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG 204
[63][TOP]
>UniRef100_A6E221 Pseudouridine synthase n=1 Tax=Roseovarius sp. TM1035
RepID=A6E221_9RHOB
Length = 347
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/115 (34%), Positives = 60/115 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+PVQGG R +D +A + L++ + PRLVHRLD+D SG+L++ RT+ +A L
Sbjct: 105 KPPGLPVQGGSKQLRHVDGLAEA-LRFGAEDKPRLVHRLDKDTSGVLLLARTREAAKGLT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
+ FR + + ++ Y A V G P G + L K K +
Sbjct: 164 AAFRHRNT-------------RKIYWAAVAGVPTPRMGTIRFGLVKAPGHGAKGE 205
[64][TOP]
>UniRef100_B9JWI8 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4
RepID=B9JWI8_AGRVS
Length = 330
Score = 63.9 bits (154), Expect = 5e-09
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 109 KPAGLAVQGGSGLNRHIDQMLEAWTSKK-GEKPRLVHRLDRDTSGVLVVARTRGAAQKLT 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ + K ++G
Sbjct: 168 AAFRERDT-------------KKTYWALVKGVPRKHDDKISTWVVKEQTEDG 206
[65][TOP]
>UniRef100_D0D5C9 Ribosomal large subunit pseudouridine synthase C n=1
Tax=Citreicella sp. SE45 RepID=D0D5C9_9RHOB
Length = 351
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/106 (36%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+PVQGG R +D ++ + L++ E PRLVHRLD+D SG+L++ RT+ A L
Sbjct: 109 KPPGLPVQGGSKTTRHVDGLSEA-LRFGLDEKPRLVHRLDKDTSGVLLLARTRAVAQALT 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ R K + ++ Y A+V G P G + +L K
Sbjct: 168 AAIRHKQT-------------RKIYWAVVAGVPTPYLGEIRYALVK 200
[66][TOP]
>UniRef100_C6QGR9 Pseudouridine synthase n=1 Tax=Hyphomicrobium denitrificans ATCC
51888 RepID=C6QGR9_9RHIZ
Length = 313
Score = 63.9 bits (154), Expect = 5e-09
Identities = 39/112 (34%), Positives = 60/112 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG K+ +D + E PRLVHRLDRD +G+L++ +T+ +A L
Sbjct: 93 KPFGLAVQGGTGTKKHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLG 152
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
F+ ++++ + Y ALV G P+ P+G V A+L K +G
Sbjct: 153 RTFQTRSAA-------------KTYWALVKGVPKPPQGKVEAALVKASGPDG 191
[67][TOP]
>UniRef100_C3MB12 Pseudouridine synthase n=1 Tax=Rhizobium sp. NGR234
RepID=C3MB12_RHISN
Length = 330
Score = 63.5 bits (153), Expect = 7e-09
Identities = 40/112 (35%), Positives = 60/112 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 109 KPAGLAVQGGSGVSRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVIARTRGAAQQLT 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y +LV G PR+ ++ L K +G
Sbjct: 168 AAFRERDT-------------RKIYWSLVKGVPRKREDRISTWLVKEQTPDG 206
[68][TOP]
>UniRef100_A6X0P5 Pseudouridine synthase n=1 Tax=Ochrobactrum anthropi ATCC 49188
RepID=A6X0P5_OCHA4
Length = 326
Score = 63.5 bits (153), Expect = 7e-09
Identities = 39/112 (34%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVSRHVDGMLEAW-RNKKGEKPRLVHRIDRDTSGVLVVARTRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L + +G
Sbjct: 166 TAFRERDT-------------KKTYWALVKGVPRKREDKISTWLVREQTPDG 204
[69][TOP]
>UniRef100_A5VQE3 Pseudouridine synthase n=1 Tax=Brucella ovis ATCC 25840
RepID=A5VQE3_BRUO2
Length = 318
Score = 63.5 bits (153), Expect = 7e-09
Identities = 40/112 (35%), Positives = 60/112 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + E PRLVHR+DRD SG+LV+ RT+ +A L
Sbjct: 99 KPAGLAVQGGSGVTRHIDGMLEAWRSTK-GEKPRLVHRIDRDTSGVLVVARTRGAAQALT 157
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE+ + ++ Y ALV G PR+ ++ L K +G
Sbjct: 158 ASFRERDT-------------KKTYWALVKGVPRKREDKISTWLVKEQTPDG 196
[70][TOP]
>UniRef100_Q1YNH2 Pseudouridine synthase n=1 Tax=Aurantimonas manganoxydans SI85-9A1
RepID=Q1YNH2_MOBAS
Length = 328
Score = 63.5 bits (153), Expect = 7e-09
Identities = 40/112 (35%), Positives = 59/112 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +AT L
Sbjct: 109 KPAGLAVQGGSGLNRHVDKMLEAW-RSRKGEKPRLVHRLDRDTSGVLVVARTRGAATALT 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
FRE+ + ++ Y A++ G P G ++ L K +G
Sbjct: 168 KAFRERDT-------------KKTYWAILKGVPVPHEGRISTFLVKEQTPDG 206
[71][TOP]
>UniRef100_C8S4Y4 Pseudouridine synthase, RluA family n=1 Tax=Rhodobacter sp. SW2
RepID=C8S4Y4_9RHOB
Length = 349
Score = 63.5 bits (153), Expect = 7e-09
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDI-KRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVL 179
KPPG+P QGG R +D + + LK+ Y E P+LVHRLD+D SG+L++ RT A L
Sbjct: 105 KPPGLPSQGGSGQGDRHVDGLTEA-LKFGYKERPKLVHRLDKDTSGVLILARTDRVARAL 163
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR + + ++ Y ALV G P +G + +L K
Sbjct: 164 SEAFRHRNT-------------RKIYWALVAGVPHPRQGSIKYALMK 197
[72][TOP]
>UniRef100_A6FLR0 Pseudouridine synthase n=1 Tax=Roseobacter sp. AzwK-3b
RepID=A6FLR0_9RHOB
Length = 348
Score = 63.5 bits (153), Expect = 7e-09
Identities = 40/106 (37%), Positives = 56/106 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+PVQGG R +D +A L++ E PRLVHRLD+D SG+L++ R++ A L
Sbjct: 106 KPPGLPVQGGSKQTRHVDGLA-DALRFGAEEKPRLVHRLDKDTSGVLILARSRAVAKTLT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR +R ++ Y A V G P G + L K
Sbjct: 165 AGFR-------------HRDTRKIYWAAVAGVPSPRMGTIRFGLVK 197
[73][TOP]
>UniRef100_Q16AB4 Pseudouridine synthase n=1 Tax=Roseobacter denitrificans OCh 114
RepID=Q16AB4_ROSDO
Length = 346
Score = 63.2 bits (152), Expect = 9e-09
Identities = 39/106 (36%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+P QGG R +D +A + LK+ + + PRLVHRLD+D SG+L++ RT+ +A L
Sbjct: 105 KPAGLPTQGGSGQTRHVDGLAEA-LKFGFEDKPRLVHRLDKDTSGVLLLARTRMAAKALT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ R K + ++ Y ALV G P G + +L K
Sbjct: 164 TAMRHKET-------------RKIYWALVAGVPTPYLGEIRYALVK 196
[74][TOP]
>UniRef100_C7D6Y4 Pseudouridine synthase n=1 Tax=Thalassiobium sp. R2A62
RepID=C7D6Y4_9RHOB
Length = 347
Score = 63.2 bits (152), Expect = 9e-09
Identities = 42/106 (39%), Positives = 54/106 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ QGG R LD +A + LK++Y E PRLVHRLDRD SG+ +M RT+ A +
Sbjct: 105 KPSGIASQGGSKQVRHLDGLAEA-LKFDYFEKPRLVHRLDRDTSGVFIMARTREIAKAMS 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F+E R ++ Y A V G P G V L K
Sbjct: 164 DAFKE-------------RETRKIYWAAVGGVPHPAMGTVRWGLIK 196
[75][TOP]
>UniRef100_B7QX41 Pseudouridine synthase n=1 Tax=Ruegeria sp. R11 RepID=B7QX41_9RHOB
Length = 348
Score = 63.2 bits (152), Expect = 9e-09
Identities = 42/114 (36%), Positives = 61/114 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + +D ++ + LK++ E PRLVHRLD+D SG+LV+ RT+ +A L
Sbjct: 106 KPAGLAVQGGSGTTKHVDGLSEA-LKFDAEEKPRLVHRLDKDTSGVLVLARTRQAAQALT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKS 344
+ FR + ++ Y ALV G P G + L K +GKS
Sbjct: 165 AAFR-------------HHATRKIYWALVAGVPTPYLGEIKCGLVK-APGHGKS 204
[76][TOP]
>UniRef100_Q28US1 Pseudouridine synthase n=1 Tax=Jannaschia sp. CCS1
RepID=Q28US1_JANSC
Length = 354
Score = 62.8 bits (151), Expect = 1e-08
Identities = 39/106 (36%), Positives = 55/106 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+P QGG R +D +A + LK+ + PRLVHRLD+D SG+L+M RT+ A L
Sbjct: 111 KPAGLPTQGGTGQSRHVDGLAEA-LKFGLEDKPRLVHRLDKDTSGVLLMARTRMGAKALT 169
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y A V G P G + L K
Sbjct: 170 DAFRLRST-------------RKIYWAAVAGSPLPRMGTIKLGLVK 202
[77][TOP]
>UniRef100_Q11HT2 Pseudouridine synthase n=1 Tax=Chelativorans sp. BNC1
RepID=Q11HT2_MESSB
Length = 327
Score = 62.8 bits (151), Expect = 1e-08
Identities = 39/112 (34%), Positives = 59/112 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 106 KPAGLAVQGGSGVNRHVDGMLEAW-RNKRGEKPRLVHRLDRDTSGVLVVARTRLAAVKLT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
FR R ++ Y AL+ G P++ G ++ L + +G
Sbjct: 165 ESFRA-------------RETKKIYWALIKGVPKKAEGRISTWLVRETTPDG 203
[78][TOP]
>UniRef100_A4EPD5 Pseudouridine synthase n=1 Tax=Roseobacter sp. SK209-2-6
RepID=A4EPD5_9RHOB
Length = 348
Score = 62.8 bits (151), Expect = 1e-08
Identities = 40/106 (37%), Positives = 56/106 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D ++ + L+ E E PRLVHRLD+D SG+LV+ R + +A L
Sbjct: 106 KPAGLAVQGGSGTTRHVDGLSEA-LRLEAEEKPRLVHRLDKDTSGVLVLARNRKAAQALT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR K + ++ Y ALV G P G + L K
Sbjct: 165 AAFRHKNT-------------RKIYWALVAGVPTPYLGEIKTGLVK 197
[79][TOP]
>UniRef100_A3X427 Pseudouridine synthase n=1 Tax=Roseobacter sp. MED193
RepID=A3X427_9RHOB
Length = 348
Score = 62.8 bits (151), Expect = 1e-08
Identities = 39/106 (36%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + +D +A L+++ E PRLVHRLD+D SG+LV+ R + +A L
Sbjct: 106 KPAGLAVQGGSGTTKHVDGLA-DALRFDAEEKPRLVHRLDKDTSGVLVLARNRLAAKSLT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR + + ++ Y ALV G P G + A L K
Sbjct: 165 AAFRHRNT-------------RKIYWALVAGVPTPYLGEIKAGLVK 197
[80][TOP]
>UniRef100_A4U0J7 Pseudouridine synthase n=1 Tax=Magnetospirillum gryphiswaldense
RepID=A4U0J7_9PROT
Length = 333
Score = 62.4 bits (150), Expect = 1e-08
Identities = 36/107 (33%), Positives = 57/107 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG L ++ + PRLVHRLD+D SG+L++GR+ +A L
Sbjct: 108 KPAGIAVQGGTGTGDKHIDAWLDALMFDRDDRPRLVHRLDKDTSGVLLLGRSANAAAKLA 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKV 323
+ F+ +R ++ Y ALV+G P+ +G + A+L K+
Sbjct: 168 AAFK-------------SRAARKCYWALVVGVPKLRQGRIDAALAKL 201
[81][TOP]
>UniRef100_Q5FQE0 Pseudouridine synthase n=1 Tax=Gluconobacter oxydans
RepID=Q5FQE0_GLUOX
Length = 335
Score = 62.0 bits (149), Expect = 2e-08
Identities = 38/107 (35%), Positives = 57/107 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ QGG I + +D++ L+ E + PRLVHR+DRD SGIL++ RT A L
Sbjct: 102 KPSGLATQGGPGITKHVDMMLDG-LRTEGGDRPRLVHRIDRDTSGILLIARTPGVAAKLA 160
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKV 323
+ FR R +++ Y A+V+G P G++ L K+
Sbjct: 161 AAFR-------------GRDVEKTYWAVVVGRPSPESGIIDQPLAKI 194
[82][TOP]
>UniRef100_B4R911 Pseudouridine synthase n=1 Tax=Phenylobacterium zucineum HLK1
RepID=B4R911_PHEZH
Length = 325
Score = 62.0 bits (149), Expect = 2e-08
Identities = 40/106 (37%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + ++ E E PRLVHRLDRD SG+LV+G+T +A L
Sbjct: 103 KPSGLAVQGGTKTTRHIDGLLSAW--GEGLERPRLVHRLDRDTSGVLVLGKTPGAAAKLA 160
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F ++ + Q+ Y ALV G P+ +G++ L K
Sbjct: 161 GAFAKRRT-------------QKIYWALVAGLPKPGQGVLELPLAK 193
[83][TOP]
>UniRef100_A9HEG2 Pseudouridine synthase n=1 Tax=Roseobacter litoralis Och 149
RepID=A9HEG2_9RHOB
Length = 346
Score = 62.0 bits (149), Expect = 2e-08
Identities = 38/106 (35%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+P QGG R +D ++ + LK+ + + PRLVHRLD+D SG+L++ RT+ +A L
Sbjct: 105 KPAGLPTQGGSGQTRHVDGLSEA-LKFGFEDKPRLVHRLDKDTSGVLLLARTRMAAKALT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ R K + ++ Y ALV G P G + +L K
Sbjct: 164 TAMRHKET-------------RKIYWALVAGVPTPYLGEIRYALVK 196
[84][TOP]
>UniRef100_UPI0001908804 RNA-pseudouridine synthase protein, ribosomal large subunit C n=1
Tax=Rhizobium etli CIAT 894 RepID=UPI0001908804
Length = 174
Score = 61.6 bits (148), Expect = 3e-08
Identities = 32/66 (48%), Positives = 44/66 (66%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 108 KPPGIAVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLT 166
Query: 183 SIFREK 200
+ FRE+
Sbjct: 167 AAFRER 172
[85][TOP]
>UniRef100_Q98N25 Pseudouridine synthase n=1 Tax=Mesorhizobium loti
RepID=Q98N25_RHILO
Length = 326
Score = 61.6 bits (148), Expect = 3e-08
Identities = 40/112 (35%), Positives = 59/112 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R++D + + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRNVDDMLEAW-RNQKGEKPRLVHRLDRDTSGVLVVARTRLAAMKLS 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
FR R ++ Y ALV G P + ++ L K ++G
Sbjct: 166 EAFRA-------------RETKKTYWALVKGVPPKREDKISTWLIKEPTEDG 204
[86][TOP]
>UniRef100_A1USS6 Pseudouridine synthase n=1 Tax=Bartonella bacilliformis KC583
RepID=A1USS6_BARBK
Length = 327
Score = 61.6 bits (148), Expect = 3e-08
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHRLDR+ SG+LV+ R++++A L
Sbjct: 107 KPAGLAVQGGSGLTRHVDGMLEAW-RNKKGEKPRLVHRLDRETSGLLVVARSRSAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FR R +++ Y ALV G PR+ + ++ + K G
Sbjct: 166 AAFR-------------TREMKKIYWALVRGVPRKKQEKISTWMAKETTAQG 204
[87][TOP]
>UniRef100_Q0FAA8 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium HTCC2255
RepID=Q0FAA8_9RHOB
Length = 348
Score = 61.6 bits (148), Expect = 3e-08
Identities = 38/106 (35%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D ++A+ LK++ P+LVHRLD+D SG+L++ RT +A+ L
Sbjct: 106 KPAGLAVQGGSGQMRHVDGLSAA-LKFDLENKPKLVHRLDKDTSGVLLLARTGLAASGLT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F ++R ++ Y A V GCP G + L K
Sbjct: 165 KAF-------------QSRETRKIYWAAVAGCPHPKIGTIKYGLIK 197
[88][TOP]
>UniRef100_Q54N28 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum
RepID=Q54N28_DICDI
Length = 718
Score = 61.6 bits (148), Expect = 3e-08
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 38/147 (25%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVL- 179
KP G+ VQGG + + LD++ S L++E E P+LVHRLDR+ SGIL++GR++ +A+ +
Sbjct: 442 KPQGLSVQGGTGLNKHLDMML-SHLRFEKDENPKLVHRLDRNTSGILILGRSKLAASAMT 500
Query: 180 --------------------------------HSIFREK---TSSASDDLGTEN--RVLQ 248
+FREK ++ + D EN + ++
Sbjct: 501 KKFELKLVKENKKDKDDNNNNKNNKNNNKNDSKRLFREKEVFNNNKNKDEENENYSKGIK 560
Query: 249 RKYRALVIGCPRRPRGLVTASLGKVVV 329
+ Y AL+ P G + A L KVVV
Sbjct: 561 KTYWALLGSTPTPKEGRIRAPLKKVVV 587
[89][TOP]
>UniRef100_Q3J5P2 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides 2.4.1
RepID=Q3J5P2_RHOS4
Length = 346
Score = 61.2 bits (147), Expect = 3e-08
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDI-KRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVL 179
KP G+P QGG +R +D + + LK+ Y E P+LVHRLD+D SG+LV+ RT A L
Sbjct: 104 KPAGLPSQGGSGQGERHVDGLTEA-LKFGYKERPKLVHRLDKDTSGVLVLARTDRVARAL 162
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR + + ++ Y ALV G P +G + +L K
Sbjct: 163 SESFRHRNT-------------RKIYWALVAGVPSPKQGSIKYALMK 196
[90][TOP]
>UniRef100_B9KLC1 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides KD131
RepID=B9KLC1_RHOSK
Length = 343
Score = 61.2 bits (147), Expect = 3e-08
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDI-KRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVL 179
KP G+P QGG +R +D + + LK+ Y E P+LVHRLD+D SG+LV+ RT A L
Sbjct: 101 KPAGLPSQGGSGQGERHVDGLTEA-LKFGYKERPKLVHRLDKDTSGVLVLARTDRVARAL 159
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR + + ++ Y ALV G P +G + +L K
Sbjct: 160 SESFRHRNT-------------RKIYWALVAGVPSPKQGSIKYALMK 193
[91][TOP]
>UniRef100_A4YWT8 Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. ORS278
RepID=A4YWT8_BRASO
Length = 458
Score = 61.2 bits (147), Expect = 3e-08
Identities = 38/115 (33%), Positives = 62/115 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + ++ + PRLVHR+DR+ SG L++ +T+ +AT L
Sbjct: 233 KPAGLAVQGGSGMTRHIDQML-EVMRDAKGQKPRLVHRIDRETSGCLLIAKTRFAATHLT 291
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
FR +++ ++ Y ALV G P+ +G ++ L K D G+ D
Sbjct: 292 GAFRHRSA-------------RKVYWALVAGVPKPKQGRISTYLAK---DEGEDD 330
[92][TOP]
>UniRef100_A4WVH9 Pseudouridine synthase n=1 Tax=Rhodobacter sphaeroides ATCC 17025
RepID=A4WVH9_RHOS5
Length = 346
Score = 61.2 bits (147), Expect = 3e-08
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDI-KRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVL 179
KP G+P QGG +R +D + + LK+ Y E P+LVHRLD+D SG+LV+ RT A L
Sbjct: 104 KPAGLPSQGGSGQGERHVDGLTEA-LKFGYKERPKLVHRLDKDTSGVLVLARTDRVARAL 162
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR + + ++ Y ALV G P +G + +L K
Sbjct: 163 SESFRHRNT-------------RKIYWALVAGVPSPKQGSIKYALMK 196
[93][TOP]
>UniRef100_A3WVV1 Pseudouridine synthase n=1 Tax=Nitrobacter sp. Nb-311A
RepID=A3WVV1_9BRAD
Length = 380
Score = 61.2 bits (147), Expect = 3e-08
Identities = 36/106 (33%), Positives = 59/106 (55%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + ++ + PRLVHRLDR+ +G L++ RT+ +AT L
Sbjct: 155 KPAGLAVQGGSGLSRHIDGMLET-MRDAKGQRPRLVHRLDRETAGCLLIARTRFAATALT 213
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y ALV G P+ +G ++ L K
Sbjct: 214 GAFRHRSA-------------RKIYWALVAGVPKPKQGRISTYLAK 246
[94][TOP]
>UniRef100_Q211J3 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisB18
RepID=Q211J3_RHOPB
Length = 501
Score = 60.8 bits (146), Expect = 4e-08
Identities = 35/106 (33%), Positives = 59/106 (55%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D++ ++ + PRLVHRLD++ +G L++ +T+ +AT L
Sbjct: 276 KPAGLAVQGGSGTTRHVDLML-EVMRDAKGQKPRLVHRLDKETAGCLLIAKTRFAATALT 334
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FRE+++ ++ Y ALV G P+ +G ++ L K
Sbjct: 335 GAFRERSA-------------RKVYWALVAGVPKPKQGRISTYLAK 367
[95][TOP]
>UniRef100_A9IVY6 Pseudouridine synthase n=1 Tax=Bartonella tribocorum CIP 105476
RepID=A9IVY6_BART1
Length = 327
Score = 60.8 bits (146), Expect = 4e-08
Identities = 37/112 (33%), Positives = 60/112 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + E PRLVHRLDR+ SG+L++ R++ +A L
Sbjct: 107 KPAGLAVQGGSGLTRHIDSML-EVWRNKKGEKPRLVHRLDRETSGVLIVARSRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FRE R ++ Y ALV G P++ + ++ + K + G
Sbjct: 166 AAFRE-------------RETKKTYWALVRGVPKKKQDKISTWMVKEMTAQG 204
[96][TOP]
>UniRef100_A5PEL5 Pseudouridine synthase n=1 Tax=Erythrobacter sp. SD-21
RepID=A5PEL5_9SPHN
Length = 376
Score = 60.8 bits (146), Expect = 4e-08
Identities = 37/106 (34%), Positives = 54/106 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ QGG + +D + + ++ + PRLVHRLD+D SGIL++ RT SA
Sbjct: 108 KPPGLATQGGTNTFNHVDGLLDAYMEEGEEQRPRLVHRLDKDTSGILLVARTPGSAAFFS 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F R ++ Y ALV+G P +G++ A L K
Sbjct: 168 KRF-------------SGRSAKKIYWALVVGVPDIRQGVIEAPLAK 200
[97][TOP]
>UniRef100_Q5LW27 Pseudouridine synthase n=1 Tax=Ruegeria pomeroyi RepID=Q5LW27_SILPO
Length = 347
Score = 60.5 bits (145), Expect = 6e-08
Identities = 39/106 (36%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D ++ + L++ E PRLVHRLD+D SG+LV+ RT+ +A L
Sbjct: 105 KPAGLAVQGGSGQTRHVDGLSEA-LRFGNDENPRLVHRLDKDTSGVLVLARTREAAARLT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR + + ++ Y ALV G P G + L K
Sbjct: 164 AAFRHRNT-------------RKIYWALVAGVPTPYLGEIKTGLVK 196
[98][TOP]
>UniRef100_A9HLV5 Pseudouridine synthase n=1 Tax=Gluconacetobacter diazotrophicus PAl
5 RepID=A9HLV5_GLUDA
Length = 325
Score = 60.5 bits (145), Expect = 6e-08
Identities = 36/107 (33%), Positives = 54/107 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+PVQGG I +D + + PRLVHR+DRD SG+L++ RT A L
Sbjct: 104 KPAGLPVQGGPGIIHHVDAMLDGLKDQDDDPRPRLVHRIDRDTSGLLLLARTPGVAAKLA 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKV 323
+ FR R +++ Y A+V+G P G++ L ++
Sbjct: 164 ASFR-------------GRDVRKTYWAIVVGRPSPASGVIDQPLARL 197
[99][TOP]
>UniRef100_A5ELJ1 Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. BTAi1
RepID=A5ELJ1_BRASB
Length = 458
Score = 60.5 bits (145), Expect = 6e-08
Identities = 38/115 (33%), Positives = 62/115 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + ++ + PRLVHR+DR+ SG L++ +T+ +AT L
Sbjct: 233 KPVGLAVQGGSGMTRHIDQML-EVMRDAKGQKPRLVHRIDRETSGCLLIAKTRFAATHLT 291
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
FR +++ ++ Y ALV G P+ +G ++ L K D G+ D
Sbjct: 292 GAFRSRSA-------------RKIYWALVAGVPKPKQGRISTYLAK---DEGEDD 330
[100][TOP]
>UniRef100_C8SWC1 Pseudouridine synthase, RluA family n=1 Tax=Mesorhizobium
opportunistum WSM2075 RepID=C8SWC1_9RHIZ
Length = 326
Score = 60.5 bits (145), Expect = 6e-08
Identities = 40/112 (35%), Positives = 58/112 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R++D + + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 107 KPAGLAVQGGSGVTRNVDDMLEAW-RNQKGEKPRLVHRLDRDTSGVLVVARTRLAAMKLS 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
FR R ++ Y ALV G P + ++ L K +G
Sbjct: 166 EAFRA-------------RETKKTYWALVKGVPPKREDKISTWLIKEPTPDG 204
[101][TOP]
>UniRef100_Q3SST6 Pseudouridine synthase n=1 Tax=Nitrobacter winogradskyi Nb-255
RepID=Q3SST6_NITWN
Length = 412
Score = 60.1 bits (144), Expect = 7e-08
Identities = 35/106 (33%), Positives = 59/106 (55%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + ++ + PRLVHRLDR+ +G L++ +T+ +AT L
Sbjct: 187 KPAGLAVQGGSGLSRHIDGMLET-MRDAKGQRPRLVHRLDRETAGCLLIAKTRFAATALT 245
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y ALV G P+ +G ++ L K
Sbjct: 246 GAFRHRSA-------------RKIYWALVAGVPKPKQGRISTYLAK 278
[102][TOP]
>UniRef100_Q1GJZ2 Pseudouridine synthase n=1 Tax=Ruegeria sp. TM1040
RepID=Q1GJZ2_SILST
Length = 348
Score = 59.7 bits (143), Expect = 1e-07
Identities = 40/114 (35%), Positives = 61/114 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + +D ++ + L+++ + PRLVHRLD+D SG+LV+ R + +A L
Sbjct: 106 KPAGLAVQGGSGTTKHVDGLSEA-LRFDAEDKPRLVHRLDKDTSGLLVLARNRKAAQGLT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKS 344
+ FR K + ++ Y ALV G P G + L K +GKS
Sbjct: 165 AAFRHKNT-------------RKIYWALVAGVPTPYLGEIKTGLVK-APGHGKS 204
[103][TOP]
>UniRef100_Q0BYW5 Pseudouridine synthase family protein n=1 Tax=Hyphomonas neptunium
ATCC 15444 RepID=Q0BYW5_HYPNA
Length = 244
Score = 59.7 bits (143), Expect = 1e-07
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPGM QGG + +SLD + + K + PRLVHRLD+ SG+++ RTQ +A L
Sbjct: 34 KPPGMASQGGSSVGQSLDDLLWAFAKSN-GKRPRLVHRLDQGTSGVMLTARTQPAAAFLS 92
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIG-CPRRPRGLVTASLGKV 323
+ F R Q+ Y ALV G P G++ ASL KV
Sbjct: 93 AAF-------------AGRDAQKTYLALVKGKLPPAEHGVIDASLVKV 127
[104][TOP]
>UniRef100_B0U937 Pseudouridine synthase n=1 Tax=Methylobacterium sp. 4-46
RepID=B0U937_METS4
Length = 469
Score = 59.7 bits (143), Expect = 1e-07
Identities = 41/115 (35%), Positives = 61/115 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG KR +D + + L+ + PRLVHRLD+D +G LV+ +T+ +A L
Sbjct: 242 KPYGLAVQGGSGTKRHVDGLLEA-LRAPDGQKPRLVHRLDKDTAGCLVIAKTRLAAATLA 300
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKSD 347
FR +R ++ Y AL G P+ +G V+ L K V G++D
Sbjct: 301 KTFR-------------SRAARKIYWALAAGVPKVRQGRVSTYLAKEEV--GEAD 340
[105][TOP]
>UniRef100_C9CUC2 Ribosomal large subunit pseudouridine synthase C n=1
Tax=Silicibacter sp. TrichCH4B RepID=C9CUC2_9RHOB
Length = 348
Score = 59.7 bits (143), Expect = 1e-07
Identities = 40/114 (35%), Positives = 61/114 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + +D ++ + L+++ + PRLVHRLD+D SG+LV+ R + +A L
Sbjct: 106 KPAGLAVQGGSGTTKHVDGLSEA-LRFDAEDKPRLVHRLDKDTSGLLVLARNRKAAQGLT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKS 344
+ FR K + ++ Y ALV G P G + L K +GKS
Sbjct: 165 AAFRHKNT-------------RKIYWALVAGVPTPYLGEIKTGLVK-APGHGKS 204
[106][TOP]
>UniRef100_B6BD97 Pseudouridine synthase n=1 Tax=Rhodobacterales bacterium Y4I
RepID=B6BD97_9RHOB
Length = 348
Score = 59.7 bits (143), Expect = 1e-07
Identities = 41/114 (35%), Positives = 60/114 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + +D +A + LK+ E P+LVHR+D+D SG+LV+ R + +A L
Sbjct: 106 KPAGLAVQGGSGTTKHVDGLAEA-LKFGLEEKPKLVHRIDKDTSGVLVLARNRKAAQGLT 164
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGKS 344
+ FR K + ++ Y ALV G P G + L K +GKS
Sbjct: 165 AAFRHKNT-------------RKIYWALVAGVPTPYLGEIKNGLVK-APGHGKS 204
[107][TOP]
>UniRef100_Q2ND80 Pseudouridine synthase n=1 Tax=Erythrobacter litoralis HTCC2594
RepID=Q2ND80_ERYLH
Length = 399
Score = 59.3 bits (142), Expect = 1e-07
Identities = 37/106 (34%), Positives = 51/106 (48%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ QGG + +D + + + E PRLVHRLD+D SG+L++ RT SA
Sbjct: 111 KPPGLATQGGTKTTKHVDGLLDAFVDGEDDPRPRLVHRLDKDTSGVLLIARTPGSAAAYS 170
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F R ++ Y ALV+G P G + A L K
Sbjct: 171 KRF-------------AGRSAKKVYWALVVGVPDLHEGEIDAPLAK 203
[108][TOP]
>UniRef100_B2IK20 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica
ATCC 9039 RepID=B2IK20_BEII9
Length = 350
Score = 59.3 bits (142), Expect = 1e-07
Identities = 39/106 (36%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + +D + AS L E + P LVHRLDRD SG+L++ +T+ A L
Sbjct: 102 KPFGLAVQGGSGMTHHIDKMLAS-LPNERGDRPVLVHRLDRDTSGVLLVAKTRRMAAELG 160
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
IFR +R ++ Y A+V G P+ +G ++ L K
Sbjct: 161 EIFR-------------SRQARKIYWAVVEGVPKPAQGRISLYLAK 193
[109][TOP]
>UniRef100_B6R0Y5 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. JE062
RepID=B6R0Y5_9RHOB
Length = 349
Score = 59.3 bits (142), Expect = 1e-07
Identities = 35/106 (33%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG +KR +D + + + PRLVHRLDR+ SGIL++ +T+ +A L
Sbjct: 126 KPAGLAVQGGSGLKRHVDGML-DAFTNQKGDKPRLVHRLDRETSGILLVAKTRRAAQELT 184
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR + + ++ Y A+V G P+ +G ++ L +
Sbjct: 185 KAFRHRNT-------------RKIYWAMVAGVPKPRQGRISTYLAR 217
[110][TOP]
>UniRef100_Q6ND99 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris
RepID=Q6ND99_RHOPA
Length = 324
Score = 58.9 bits (141), Expect = 2e-07
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Frame = +3
Query: 3 KPPGMPV----QGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSA 170
KPPG+PV +GG +++ S D L+Y PP L HRLDRD SG LV+GR + +
Sbjct: 35 KPPGLPVHRGPKGGPNLEASFDA-----LRYGLPRPPVLAHRLDRDTSGCLVLGRHRKAT 89
Query: 171 TVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
L +F+ + + Y A+V G P +G + + K+ + G
Sbjct: 90 ATLGLLFKHSR-------------ISKTYWAIVEGGPTEDQGSIDLPIAKLNAERG 132
[111][TOP]
>UniRef100_Q07KQ7 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisA53
RepID=Q07KQ7_RHOP5
Length = 458
Score = 58.9 bits (141), Expect = 2e-07
Identities = 34/106 (32%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D++ ++ + PRLVHRLD++ +G L++ +T+ +AT L
Sbjct: 233 KPAGLAVQGGSGTTRHVDLML-EVMRDSKGQKPRLVHRLDKETAGCLLVAKTRFAATALT 291
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y ALV G P+ +G ++ L K
Sbjct: 292 GSFRSRSA-------------RKVYWALVAGVPKPKQGRISTYLAK 324
[112][TOP]
>UniRef100_B6IQX5 Pseudouridine synthase n=1 Tax=Rhodospirillum centenum SW
RepID=B6IQX5_RHOCS
Length = 336
Score = 58.9 bits (141), Expect = 2e-07
Identities = 36/113 (31%), Positives = 57/113 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ QGG + + LD + LK+E P+LVHRLD+D SG LV+ R+ +A L
Sbjct: 113 KPAGLATQGGTNQVKHLDAML-DALKFEAEGRPKLVHRLDKDTSGCLVLARSAAAAAKLT 171
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGK 341
+ FR +R ++ Y A+ +G P+ +G + + K G+
Sbjct: 172 AAFR-------------SREARKIYWAVTVGVPKPMKGRIDLPVAKEAGTRGE 211
[113][TOP]
>UniRef100_B3Q780 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris TIE-1
RepID=B3Q780_RHOPT
Length = 322
Score = 58.9 bits (141), Expect = 2e-07
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Frame = +3
Query: 3 KPPGMPV----QGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSA 170
KPPG+PV +GG +++ S D L+Y PP L HRLDRD SG LV+GR + +
Sbjct: 35 KPPGLPVHRGPKGGPNLEASFDA-----LRYGLPRPPVLAHRLDRDTSGCLVLGRHRKAT 89
Query: 171 TVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
L +F+ + + Y A+V G P +G + + K+ + G
Sbjct: 90 ATLGLLFKHSR-------------ISKTYWAIVEGGPTEDQGSIDLPIAKLNAERG 132
[114][TOP]
>UniRef100_B8GX34 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides
RepID=B8GX34_CAUCN
Length = 331
Score = 58.5 bits (140), Expect = 2e-07
Identities = 37/106 (34%), Positives = 55/106 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + +D + ++ E + PRLVHRLDRD SG+L++G+T ++A L
Sbjct: 105 KPAGLAVQGGTKTTKHIDKLLSAW--GEGVDRPRLVHRLDRDTSGVLLLGKTPSAAARLS 162
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F + R Q+ Y A+V G P G++ L K
Sbjct: 163 GAFAK-------------RKAQKTYWAIVAGNPHPTEGVMELHLAK 195
[115][TOP]
>UniRef100_A9DU58 Pseudouridine synthase n=1 Tax=Oceanibulbus indolifex HEL-45
RepID=A9DU58_9RHOB
Length = 348
Score = 58.5 bits (140), Expect = 2e-07
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGI-DIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVL 179
KPPG+ VQGG R +D ++ + + ++ E PRLVHRLDRD SG+L++ RT+ +A L
Sbjct: 105 KPPGLAVQGGSGQADRHVDALSEALI-FDAEEKPRLVHRLDRDTSGVLLLARTRLAAKAL 163
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ R +R ++ Y A+V G P G V L K
Sbjct: 164 TAAMR-------------HRETRKIYWAIVAGVPTPYLGEVKYGLVK 197
[116][TOP]
>UniRef100_A3V4J4 Pseudouridine synthase n=1 Tax=Loktanella vestfoldensis SKA53
RepID=A3V4J4_9RHOB
Length = 351
Score = 58.5 bits (140), Expect = 2e-07
Identities = 38/106 (35%), Positives = 53/106 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ QGG + R +D +A + L + Y E PRLVHRLDRD SG+L++ RT+ A L
Sbjct: 108 KPHGLATQGGTNTTRHVDGMAEA-LMFGYDEKPRLVHRLDRDTSGVLLLARTRMMAKQLT 166
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
++R ++ Y A V G P G + L K
Sbjct: 167 E-------------NLKHRETRKIYWAAVAGVPHPRAGTIKYGLVK 199
[117][TOP]
>UniRef100_B8IK79 Pseudouridine synthase n=1 Tax=Methylobacterium nodulans ORS 2060
RepID=B8IK79_METNO
Length = 457
Score = 58.2 bits (139), Expect = 3e-07
Identities = 37/106 (34%), Positives = 56/106 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG KR +D + + L+ + PRLVHRLD+D +G LV+ +++ +A L
Sbjct: 230 KPFGLAVQGGSGTKRHVDGLLEA-LRTPDGQKPRLVHRLDKDTAGCLVVAKSRLAAATLA 288
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R ++ Y AL G PR +G ++ L K
Sbjct: 289 KTFR-------------SRAARKIYWALAAGVPRVRQGRISTYLAK 321
[118][TOP]
>UniRef100_B6JEZ4 Pseudouridine synthase n=1 Tax=Oligotropha carboxidovorans OM5
RepID=B6JEZ4_OLICO
Length = 412
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/106 (33%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + ++ + PRLVHRLDR+ SG L++ +T+ +A+ L
Sbjct: 187 KPAGLAVQGGSGLTRHVDGML-EVMRDAKGQRPRLVHRLDRETSGCLLIAKTRFAASTLT 245
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y ALV G P+ +G ++ L K
Sbjct: 246 GSFRHRSA-------------RKIYWALVAGVPKPKQGRISTYLAK 278
[119][TOP]
>UniRef100_Q6N4X5 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris
RepID=Q6N4X5_RHOPA
Length = 455
Score = 57.8 bits (138), Expect = 4e-07
Identities = 34/106 (32%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + L+ + PRLVHR+D++ +G L++ +T+ +AT L
Sbjct: 230 KPAGLAVQGGSGTTRHIDQML-EVLRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALT 288
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y ALV G P+ +G ++ L K
Sbjct: 289 GSFRHRSA-------------RKIYWALVAGVPKPKQGRISTYLAK 321
[120][TOP]
>UniRef100_Q6FZF3 Pseudouridine synthase n=1 Tax=Bartonella quintana
RepID=Q6FZF3_BARQU
Length = 327
Score = 57.8 bits (138), Expect = 4e-07
Identities = 36/112 (32%), Positives = 58/112 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R D + + + E PRLVHRLDR+ SG+L++ R++ +A L
Sbjct: 107 KPAGLAVQGGSGLTRHFDSML-EVWRNKKGEKPRLVHRLDRETSGVLIVARSRGAAQTLT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FR R ++ Y ALV G P++ + ++ + K + G
Sbjct: 166 AAFRA-------------RETKKTYWALVRGVPKKKQDKISTWVVKDITAQG 204
[121][TOP]
>UniRef100_Q1QN01 Pseudouridine synthase n=1 Tax=Nitrobacter hamburgensis X14
RepID=Q1QN01_NITHX
Length = 411
Score = 57.8 bits (138), Expect = 4e-07
Identities = 35/106 (33%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + PRLVHRLDR+ +G L++ +T+ +AT L
Sbjct: 186 KPAGLAVQGGSGLSRHIDGMLEVMCDAK-GQRPRLVHRLDRETAGCLLVAKTRFAATALT 244
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y ALV G P+ +G ++ L K
Sbjct: 245 GSFRHRSA-------------RKIYWALVAGVPKPKQGRISTYLAK 277
[122][TOP]
>UniRef100_C6AE97 Pseudouridine synthase n=1 Tax=Bartonella grahamii as4aup
RepID=C6AE97_BARGA
Length = 327
Score = 57.8 bits (138), Expect = 4e-07
Identities = 36/112 (32%), Positives = 59/112 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + E PRLVHRLDR+ SG+L++ R++ +A L
Sbjct: 107 KPAGLAVQGGSGLTRHMDSML-EVWRNKKGEKPRLVHRLDRETSGVLIVARSRGAAQSLT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
+ FR R ++ Y ALV G P++ + ++ + K + G
Sbjct: 166 AAFRA-------------RETKKTYWALVRGVPKKKQDKISTWMVKEMTAQG 204
[123][TOP]
>UniRef100_A1B058 Pseudouridine synthase n=1 Tax=Paracoccus denitrificans PD1222
RepID=A1B058_PARDP
Length = 348
Score = 57.8 bits (138), Expect = 4e-07
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDI-KRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVL 179
KPPG+P QGG R +D + + L + Y + P+LVHRLD+D SG+L++ RT A L
Sbjct: 105 KPPGLPSQGGSGQGDRHVDGLTTA-LMFGYKDRPKLVHRLDKDTSGVLLLARTDRIARAL 163
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R+ ++ Y A V G P G + L K
Sbjct: 164 SEAFR-------------HRLTRKIYWAAVAGVPHPRMGSIKYGLVK 197
[124][TOP]
>UniRef100_A4EN86 Pseudouridine synthase n=1 Tax=Roseobacter sp. CCS2
RepID=A4EN86_9RHOB
Length = 351
Score = 57.8 bits (138), Expect = 4e-07
Identities = 36/106 (33%), Positives = 54/106 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ QGG + R +D ++ + L ++Y E PRLVHRLD+D SG+L++ RT+ A L
Sbjct: 108 KPHGLATQGGTNTTRHVDGLSEA-LMFDYDEKPRLVHRLDKDTSGVLLLARTRMMAKQLT 166
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
++R ++ Y A V G P G + L K
Sbjct: 167 E-------------NLKHRETRKIYWAAVAGVPHPRAGTIKYGLVK 199
[125][TOP]
>UniRef100_Q134Y4 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisB5
RepID=Q134Y4_RHOPS
Length = 444
Score = 57.4 bits (137), Expect = 5e-07
Identities = 33/106 (31%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D++ ++ + PRLVHR+D++ +G L++ +T+ +AT L
Sbjct: 219 KPLGLAVQGGSGTTRHIDLML-EVMRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALT 277
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y ALV G P+ +G ++ L K
Sbjct: 278 GSFRSRSA-------------RKIYWALVAGVPKPKQGRISTYLAK 310
[126][TOP]
>UniRef100_Q0BUM2 Pseudouridine synthase n=1 Tax=Granulibacter bethesdensis CGDNIH1
RepID=Q0BUM2_GRABC
Length = 366
Score = 57.4 bits (137), Expect = 5e-07
Identities = 38/104 (36%), Positives = 53/104 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+P QGG I R LD + L++ + PRLVHRLDRD SG++V+ R+ A L
Sbjct: 137 KPSGLPSQGGPGITRHLDGLLDG-LRFGRDDRPRLVHRLDRDTSGVIVIARSPGVAAKLA 195
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASL 314
++FR R ++ Y A+V G P G + L
Sbjct: 196 ALFR-------------TRETEKVYWAVVAGRPVPVEGRIDRPL 226
[127][TOP]
>UniRef100_B3QB01 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris TIE-1
RepID=B3QB01_RHOPT
Length = 455
Score = 57.4 bits (137), Expect = 5e-07
Identities = 34/106 (32%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + L+ + PRLVHR+D++ +G L++ +T+ +AT L
Sbjct: 230 KPAGLAVQGGSGTTRHIDQML-EVLRDAKGQKPRLVHRIDKETAGCLLVAKTRFAATALT 288
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y ALV G P+ +G ++ L K
Sbjct: 289 GSFRHRSA-------------RKIYWALVAGVPKPKQGRISTYLAK 321
[128][TOP]
>UniRef100_C5SPD4 Pseudouridine synthase n=1 Tax=Asticcacaulis excentricus CB 48
RepID=C5SPD4_9CAUL
Length = 335
Score = 57.4 bits (137), Expect = 5e-07
Identities = 38/106 (35%), Positives = 54/106 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG K +D + ++ E E PRLVHRLDRD SG+L++G++ ++A L
Sbjct: 108 KPSGLAVQGGTKTKNHIDRLLSAW--GEGLERPRLVHRLDRDTSGVLLLGKSPSAAARLA 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F + R + Y ALV G P G++ L K
Sbjct: 166 GAFAK-------------RKAYKTYWALVAGTPDPKEGVIDVPLVK 198
[129][TOP]
>UniRef100_B9QXV5 Pseudouridine synthase n=1 Tax=Labrenzia alexandrii DFL-11
RepID=B9QXV5_9RHOB
Length = 340
Score = 57.4 bits (137), Expect = 5e-07
Identities = 34/106 (32%), Positives = 55/106 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG +KR LD + + PRLVHRLDR+ SGI+++ RT+ +A L
Sbjct: 110 KPAGLAVQGGSGLKRHLDGML-DAFTDQKGNKPRLVHRLDRETSGIILVARTRQAAQELT 168
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR + + ++ Y ++ G P+ +G ++ L +
Sbjct: 169 KAFRHRNT-------------RKVYWTILAGVPKPHQGRISTFLAR 201
[130][TOP]
>UniRef100_UPI0001903AC4 RNA-pseudouridine synthase protein, ribosomal large subunit C n=1
Tax=Rhizobium etli IE4771 RepID=UPI0001903AC4
Length = 161
Score = 57.0 bits (136), Expect = 6e-07
Identities = 30/63 (47%), Positives = 41/63 (65%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ VQGG + R +D + + + E PRLVHRLDRD SG+LV+ RT+ +A L
Sbjct: 100 KPPGIAVQGGSGVARHIDQMLEAWTSPK-GEKPRLVHRLDRDTSGVLVIARTRGAAQKLT 158
Query: 183 SIF 191
+ F
Sbjct: 159 AAF 161
[131][TOP]
>UniRef100_Q6G2Z6 Pseudouridine synthase n=1 Tax=Bartonella henselae
RepID=Q6G2Z6_BARHE
Length = 327
Score = 57.0 bits (136), Expect = 6e-07
Identities = 35/106 (33%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + E PRLVHRLDR+ SG+L++ R++ +A L
Sbjct: 107 KPAGLAVQGGSGLTRHVDSMLR-VWRNKKGEKPRLVHRLDRETSGVLIVARSRGAAQALT 165
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ FR R ++ Y ALV G P++ + ++ + K
Sbjct: 166 TAFR-------------TRETKKTYWALVRGVPKKKQDKISTWMVK 198
[132][TOP]
>UniRef100_Q2IXM0 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris HaA2
RepID=Q2IXM0_RHOP2
Length = 453
Score = 57.0 bits (136), Expect = 6e-07
Identities = 32/106 (30%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + +D++ ++ + PRLVHR+D++ +G L++ +T+ +AT L
Sbjct: 228 KPAGLAVQGGSGTTKHIDLML-EVMRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALT 286
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y ALV G P+ +G ++ L K
Sbjct: 287 GSFRHRSA-------------RKIYWALVAGVPKPKQGRISTYLAK 319
[133][TOP]
>UniRef100_B1LYP0 Pseudouridine synthase n=1 Tax=Methylobacterium radiotolerans JCM
2831 RepID=B1LYP0_METRJ
Length = 471
Score = 57.0 bits (136), Expect = 6e-07
Identities = 38/106 (35%), Positives = 55/106 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + A+ L + PRLVHRLD+D +G L++ +T+ +A L
Sbjct: 244 KPFGLAVQGGSGTVRHVDGLLAA-LTGPDGQKPRLVHRLDKDTAGCLIIAKTRLAAATLA 302
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R ++ Y AL G PR +G V+ L K
Sbjct: 303 KSFR-------------SRAARKIYWALTAGVPRVRQGRVSTYLAK 335
[134][TOP]
>UniRef100_A3JXI7 Pseudouridine synthase n=1 Tax=Sagittula stellata E-37
RepID=A3JXI7_9RHOB
Length = 347
Score = 57.0 bits (136), Expect = 6e-07
Identities = 38/106 (35%), Positives = 53/106 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ QGG R +D ++ + L + E PRLVHRLD+D SG+L++ RT+ A L
Sbjct: 105 KPPGLATQGGSGQTRHVDGLSEA-LTFGMDEKPRLVHRLDKDTSGVLLLARTRAVAKALT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
R +R ++ Y ALV G P G + L K
Sbjct: 164 EAIR-------------HREARKIYWALVAGVPTPYLGEIKYGLVK 196
[135][TOP]
>UniRef100_A0NWE6 Pseudouridine synthase n=1 Tax=Labrenzia aggregata IAM 12614
RepID=A0NWE6_9RHOB
Length = 355
Score = 57.0 bits (136), Expect = 6e-07
Identities = 35/106 (33%), Positives = 59/106 (55%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG +KR LD + + + ++P RLVHRLDR+ SGI+++ RT+ +A L
Sbjct: 126 KPAGLAVQGGSGLKRHLDGMLDAYTDRKGNKP-RLVHRLDRETSGIILVARTRQAAQELT 184
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR + + ++ Y A++ G P+ +G ++ L +
Sbjct: 185 KAFRHRNT-------------RKIYWAILAGVPKPFQGRISTFLAR 217
[136][TOP]
>UniRef100_Q2J388 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris HaA2
RepID=Q2J388_RHOP2
Length = 300
Score = 56.6 bits (135), Expect = 8e-07
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +3
Query: 3 KPPGMPV----QGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSA 170
KPPG+PV +GG +++ S + L++ PP L HRLDRD SG LV+GR + +
Sbjct: 35 KPPGLPVHRGPKGGPNLETSFEF-----LRFGLPRPPVLAHRLDRDTSGCLVLGRHRKAT 89
Query: 171 TVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
L +F+ + + Y A+V G P +G + +G++ + G
Sbjct: 90 ATLGLLFKHSK-------------ISKTYWAIVEGGPLEDQGTIDLPIGRLNAERG 132
[137][TOP]
>UniRef100_A7IPP0 Pseudouridine synthase n=1 Tax=Xanthobacter autotrophicus Py2
RepID=A7IPP0_XANP2
Length = 364
Score = 56.6 bits (135), Expect = 8e-07
Identities = 35/106 (33%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + L+ + + PRLVHR+D+D SG L++ +T+ +A+VL
Sbjct: 140 KPYGLAVQGGSGTYRHMDGIL-EVLRDKDGQKPRLVHRIDKDTSGCLLVAKTRFAASVLA 198
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R ++ Y A+V G P+ +G ++ L +
Sbjct: 199 KSFR-------------SREARKVYWAVVPGVPKPKQGRISTYLAR 231
[138][TOP]
>UniRef100_A3WAF6 Pseudouridine synthase n=1 Tax=Erythrobacter sp. NAP1
RepID=A3WAF6_9SPHN
Length = 395
Score = 56.6 bits (135), Expect = 8e-07
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCL--KYEYSEPPRLVHRLDRDCSGILVMGRTQTSATV 176
KPPG+ QGG + +D + + + + E + PRLVHRLD+D SG+L++ RT SA
Sbjct: 109 KPPGLATQGGSKTTKHVDGLLDAFVDDQEEDAPRPRLVHRLDKDTSGVLLIARTPGSAAT 168
Query: 177 LHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F R ++ Y ALV+G P G + A L K
Sbjct: 169 YSRKF-------------SGRSARKVYWALVVGVPEVREGTIDAPLAK 203
[139][TOP]
>UniRef100_A3UD63 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633
RepID=A3UD63_9RHOB
Length = 325
Score = 56.6 bits (135), Expect = 8e-07
Identities = 36/106 (33%), Positives = 55/106 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ VQGG + LD + + K + + PRLVHRLD+D SG+LV+ +T SA L
Sbjct: 103 KPPGLAVQGGSKVTMHLDHLLQAFGKGD--QKPRLVHRLDKDTSGVLVVAKTAQSAKRLA 160
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+F + R +++ Y A+ +G P G + + K
Sbjct: 161 RLF-------------QTRDVKKTYWAICLGLPAPRAGEIKGFMKK 193
[140][TOP]
>UniRef100_Q28C59 RNA pseudouridylate synthase domain-containing protein 4 n=1
Tax=Xenopus (Silurana) tropicalis RepID=RUSD4_XENTR
Length = 324
Score = 56.6 bits (135), Expect = 8e-07
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEY---SEPPRLVHRLDRDCSGILVMGRTQTSAT 173
KP G+PV GG ++RS+ + + K+ + +EP +L HRLDRD +G L++ RT +A
Sbjct: 63 KPHGLPVHGGPTVERSVASLLPALAKHHFGWKAEPLKLCHRLDRDTTGALILARTTEAAE 122
Query: 174 VLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLV 302
+ RE R + R Y AL +G P G++
Sbjct: 123 RVQQALRE-------------REVHRVYWALCLGTPSPREGIL 152
[141][TOP]
>UniRef100_C5B3A9 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens AM1
RepID=C5B3A9_METEA
Length = 463
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/106 (35%), Positives = 56/106 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + + L + PRLVHRLD+D +G L++ +T+ +A+ L
Sbjct: 236 KPFGLAVQGGSGTVRHVDGLLEA-LTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLA 294
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R ++ Y ALV G PR +G V+ L K
Sbjct: 295 KSFR-------------SRAARKIYWALVAGVPRTRQGRVSTYLVK 327
[142][TOP]
>UniRef100_B7KYY6 Pseudouridine synthase n=1 Tax=Methylobacterium chloromethanicum
CM4 RepID=B7KYY6_METC4
Length = 468
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/106 (35%), Positives = 56/106 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + + L + PRLVHRLD+D +G L++ +T+ +A+ L
Sbjct: 241 KPFGLAVQGGSGTVRHVDGLLEA-LTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLA 299
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R ++ Y ALV G PR +G V+ L K
Sbjct: 300 KSFR-------------SRAARKIYWALVAGVPRTRQGRVSTYLVK 332
[143][TOP]
>UniRef100_A9VZE6 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens PA1
RepID=A9VZE6_METEP
Length = 468
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/106 (35%), Positives = 56/106 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + + L + PRLVHRLD+D +G L++ +T+ +A+ L
Sbjct: 241 KPFGLAVQGGSGTVRHVDGLLEA-LTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLA 299
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R ++ Y ALV G PR +G V+ L K
Sbjct: 300 KSFR-------------SRAARKIYWALVAGVPRTRQGRVSTYLVK 332
[144][TOP]
>UniRef100_C7C6R8 Pseudouridine synthase n=1 Tax=Methylobacterium extorquens DM4
RepID=C7C6R8_METED
Length = 468
Score = 56.2 bits (134), Expect = 1e-06
Identities = 38/106 (35%), Positives = 56/106 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + + L + PRLVHRLD+D +G L++ +T+ +A+ L
Sbjct: 241 KPFGLAVQGGSGTVRHVDGLLEA-LTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLA 299
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R ++ Y ALV G PR +G V+ L K
Sbjct: 300 KSFR-------------SRAARKIYWALVAGVPRTRQGRVSTYLVK 332
[145][TOP]
>UniRef100_UPI0000383A7B COG0564: Pseudouridylate synthases, 23S RNA-specific n=1
Tax=Magnetospirillum magnetotacticum MS-1
RepID=UPI0000383A7B
Length = 456
Score = 55.8 bits (133), Expect = 1e-06
Identities = 38/106 (35%), Positives = 55/106 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + + L + PRLVHRLD+D +G L++ +T+ +A L
Sbjct: 229 KPFGLAVQGGSGTVRHVDGLLEA-LTGPDGQRPRLVHRLDKDTAGCLIIAKTRLAAATLA 287
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R ++ Y ALV G PR +G V+ L K
Sbjct: 288 KSFR-------------SRAARKIYWALVAGVPRTRQGRVSTYLVK 320
[146][TOP]
>UniRef100_Q89JB7 Pseudouridine synthase n=1 Tax=Bradyrhizobium japonicum
RepID=Q89JB7_BRAJA
Length = 405
Score = 55.8 bits (133), Expect = 1e-06
Identities = 34/106 (32%), Positives = 57/106 (53%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + ++ + PRLVHR+D+D SG L++ +T+ +A+ L
Sbjct: 180 KPFGLAVQGGSGTTRHIDQML-EVMRDSKGQKPRLVHRIDKDTSGCLLIAKTRFAASHLT 238
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +++ ++ Y ALV G P+ +G ++ L K
Sbjct: 239 GAFRSRSA-------------RKVYWALVPGLPKPKQGRISTFLAK 271
[147][TOP]
>UniRef100_Q07UV6 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisA53
RepID=Q07UV6_RHOP5
Length = 278
Score = 55.8 bits (133), Expect = 1e-06
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +3
Query: 3 KPPGMPV----QGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSA 170
KP G+PV +GG +++ S D + Y PP L HRLDRD SG LV+GR + +
Sbjct: 34 KPAGLPVHRGPKGGANLESSFDALC-----YGLPRPPVLAHRLDRDTSGCLVLGRHRKAT 88
Query: 171 TVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
L +F+ + + + Y A+V G P + +G + +G++ + G
Sbjct: 89 ATLGLLFK-------------HGKISKTYWAVVEGGPEQDQGTIDLPIGRLNAERG 131
[148][TOP]
>UniRef100_C6XLD6 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814
RepID=C6XLD6_HIRBI
Length = 343
Score = 55.8 bits (133), Expect = 1e-06
Identities = 37/98 (37%), Positives = 50/98 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D +A + L + PRLVHRLD+D SG+LV+ +T SA +
Sbjct: 113 KPSGLAVQGGTKTLRHVDGMA-NALTRPGQDKPRLVHRLDKDTSGLLVLAKTAQSAAEMS 171
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRG 296
FR +R L + Y A+V G P G
Sbjct: 172 KHFR-------------SRELDKIYWAVVKGVPNPNEG 196
[149][TOP]
>UniRef100_B1ZI46 Pseudouridine synthase n=1 Tax=Methylobacterium populi BJ001
RepID=B1ZI46_METPB
Length = 446
Score = 55.8 bits (133), Expect = 1e-06
Identities = 38/106 (35%), Positives = 55/106 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + + L + PRLVHRLD+D +G L++ +T+ +A L
Sbjct: 219 KPFGLAVQGGSGTVRHVDGLLEA-LTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAAATLA 277
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
FR +R ++ Y ALV G PR +G V+ L K
Sbjct: 278 KSFR-------------SRAARKIYWALVAGVPRTRQGRVSTYLVK 310
[150][TOP]
>UniRef100_B0T2G6 Pseudouridine synthase n=1 Tax=Caulobacter sp. K31
RepID=B0T2G6_CAUSK
Length = 329
Score = 55.8 bits (133), Expect = 1e-06
Identities = 36/106 (33%), Positives = 52/106 (49%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG +D + ++ E P+LVHRLDRD SG+L++G+T +A L
Sbjct: 103 KPAGLAVQGGTKTTHHIDKLLSAW--GEGVNRPKLVHRLDRDTSGVLLLGKTPAAAARLS 160
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F + R Q+ Y A+V G P G++ L K
Sbjct: 161 GSFAK-------------RKAQKTYWAIVAGNPHPTEGVIELHLAK 193
[151][TOP]
>UniRef100_Q1RJX7 Ribosomal large subunit pseudouridine synthase C n=2 Tax=Rickettsia
bellii RepID=RLUC_RICBR
Length = 301
Score = 55.8 bits (133), Expect = 1e-06
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPP--RLVHRLDRDCSGILVMGRTQTSATV 176
KP G+ QGG I S+D S LKY S+ +LVHRLD++ SG+L++ + S+
Sbjct: 103 KPAGLATQGGSKINLSVD----SALKYLNSQGADFKLVHRLDKETSGLLLIAKNYVSSVK 158
Query: 177 LHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
LH F+EK ++++ Y A+ G P + +G V ++ K
Sbjct: 159 LHDAFKEK-------------LVEKTYLAVTYGKPIKDQGEVKTNIEK 193
[152][TOP]
>UniRef100_A3TU39 Pseudouridine synthase n=1 Tax=Oceanicola batsensis HTCC2597
RepID=A3TU39_9RHOB
Length = 347
Score = 55.8 bits (133), Expect = 1e-06
Identities = 37/106 (34%), Positives = 55/106 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+P QGG R +D ++ + + +E PRLVHRLD+D SG+L++ RT+ +A L
Sbjct: 105 KPAGLPTQGGSKQSRHVDGLSQALVPAG-AEKPRLVHRLDKDTSGVLLLARTRVAAQGLT 163
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ R K + ++ Y ALV G P G + L K
Sbjct: 164 AALRHKQT-------------RKIYWALVAGVPTPYLGEIRYGLVK 196
[153][TOP]
>UniRef100_Q1NAE1 Pseudouridine synthase (Fragment) n=1 Tax=Sphingomonas sp. SKA58
RepID=Q1NAE1_9SPHN
Length = 394
Score = 55.5 bits (132), Expect = 2e-06
Identities = 33/106 (31%), Positives = 52/106 (49%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ QGG +D + + L ++ P+LVHRLD+D SG L++ RT +A
Sbjct: 192 KPPGLATQGGTKTDEHVDKLLDALL-FDAESRPKLVHRLDKDTSGALLLARTSRAAAHFA 250
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F +T+ ++ Y ALV+G P G++ + K
Sbjct: 251 KAFSSRTA-------------RKVYWALVMGVPSIEDGMIELPIAK 283
[154][TOP]
>UniRef100_C8WCB9 Pseudouridine synthase, RluA family n=3 Tax=Zymomonas mobilis
RepID=C8WCB9_ZYMMO
Length = 374
Score = 55.5 bits (132), Expect = 2e-06
Identities = 34/106 (32%), Positives = 51/106 (48%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ QGG LD + L++E P+LVHRLD+D SG+L++ R+ +A
Sbjct: 109 KPAGLATQGGTKTHYHLDGLL-DALQFEAPSRPKLVHRLDKDTSGVLLLARSANNAGYFS 167
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F +T+ + Y ALV+G P GL+ L +
Sbjct: 168 KAFSGRTA-------------HKVYWALVVGVPSITEGLIDLPLAR 200
[155][TOP]
>UniRef100_Q68XB2 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Rickettsia
typhi RepID=RLUC_RICTY
Length = 303
Score = 55.1 bits (131), Expect = 2e-06
Identities = 35/106 (33%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP + QGG I S+D A L Y+ ++ +LVHRLD++ SG+L++ + S+ LH
Sbjct: 103 KPASLATQGGSKINLSIDS-ALKYLNYQGADF-KLVHRLDKETSGLLLIAKNYLSSVKLH 160
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F+EK ++ +KY A+ G P + G+V +++GK
Sbjct: 161 DAFKEK-------------LVIKKYFAITYGRPVKNVGIVKSNIGK 193
[156][TOP]
>UniRef100_A5V9V0 Pseudouridine synthase n=1 Tax=Sphingomonas wittichii RW1
RepID=A5V9V0_SPHWW
Length = 368
Score = 54.7 bits (130), Expect = 3e-06
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Frame = +3
Query: 3 KPPGMPVQGG----IDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSA 170
KPPG+ QGG I + R LD L+++ P+LVHRLD+D SG+L++ RT +A
Sbjct: 115 KPPGLATQGGTKTDIHVDRLLDA-----LQFDAESRPKLVHRLDKDTSGVLLLARTSRAA 169
Query: 171 TVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F +T+ ++ Y A+ G P G++ + K
Sbjct: 170 AHFAKAFSSRTA-------------RKVYWAIATGVPSIDDGMIELPIAK 206
[157][TOP]
>UniRef100_Q2GDK8 Pseudouridine synthase n=1 Tax=Neorickettsia sennetsu str. Miyayama
RepID=Q2GDK8_NEOSM
Length = 305
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/108 (33%), Positives = 56/108 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G PVQ G I S+D S + EY R+VHRLD+ +G+L+ +T +A L
Sbjct: 105 KPFGFPVQSGYGITASIDNAMKS-INPEY----RVVHRLDKHTTGVLIFAKTLDAARELW 159
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVV 326
+F NR++++ Y A+VIG + +G+V + KV+
Sbjct: 160 RLF-------------SNRLVKKSYLAIVIGELKEKKGVVDCYINKVL 194
[158][TOP]
>UniRef100_Q2G4F0 Pseudouridine synthase n=1 Tax=Novosphingobium aromaticivorans DSM
12444 RepID=Q2G4F0_NOVAD
Length = 436
Score = 54.3 bits (129), Expect = 4e-06
Identities = 38/106 (35%), Positives = 54/106 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KPPG+ QGG +D + + + E PRLVHRLD+D SG+L++ RT SA
Sbjct: 116 KPPGLATQGGSGTHEHVDGLLDAYVN-EGEARPRLVHRLDKDTSGVLLIARTPGSA---- 170
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ F ++ S R ++ Y ALV+G P GL+ L K
Sbjct: 171 AFFSKRFSC---------RSARKIYWALVVGVPDVKDGLIELPLAK 207
[159][TOP]
>UniRef100_Q1GRB1 Pseudouridine synthase n=1 Tax=Sphingopyxis alaskensis
RepID=Q1GRB1_SPHAL
Length = 405
Score = 54.3 bits (129), Expect = 4e-06
Identities = 35/106 (33%), Positives = 51/106 (48%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
K PG+ QGG + +D + LKY+ P+LVHRLD+D SG L++ RT +A
Sbjct: 110 KLPGLATQGGTKTEHHVDGLL-DALKYDAPVRPKLVHRLDKDTSGALLIARTPRAAAWFA 168
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
F NR ++ Y A+V+G P +G + L K
Sbjct: 169 KSF-------------SNRSAKKTYWAIVVGVPDIAQGEIDLPLAK 201
[160][TOP]
>UniRef100_Q13DT5 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisB5
RepID=Q13DT5_RHOPS
Length = 298
Score = 54.3 bits (129), Expect = 4e-06
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Frame = +3
Query: 3 KPPGMPV----QGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSA 170
KP G+PV +GG +++ S + L++ PP L HRLDRD SG LV+GR + +
Sbjct: 35 KPAGLPVHRGPKGGPNLETSFEF-----LRFGLPRPPVLAHRLDRDTSGCLVLGRHRKAT 89
Query: 171 TVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
L +F+ + + Y A+V G P + G + +G++ + G
Sbjct: 90 ATLGLLFKHSK-------------ISKTYWAIVEGGPEQDHGTIDLPIGRLNAERG 132
[161][TOP]
>UniRef100_Q11DK7 Pseudouridine synthase n=1 Tax=Chelativorans sp. BNC1
RepID=Q11DK7_MESSB
Length = 343
Score = 54.3 bits (129), Expect = 4e-06
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Frame = +3
Query: 99 PRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGC 278
P +VHRLDRD SG++V+ +T + VL F + L+R Y ALV G
Sbjct: 143 PGIVHRLDRDTSGVMVVAKTDQAHRVLAEAFADHGQDGD---------LERAYVALVWGV 193
Query: 279 PRRPRGLVTASLG--------KVVVDNGKSD 347
PRR GLV A LG + VV G++D
Sbjct: 194 PRRISGLVDAPLGRSASDRTLRAVVPQGRAD 224
[162][TOP]
>UniRef100_C7JBV6 Ribosomal RNA large subunit 23S rRNA pseudouridine synthase C n=8
Tax=Acetobacter pasteurianus RepID=C7JBV6_ACEP3
Length = 328
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/107 (33%), Positives = 56/107 (52%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG I + +D++ L+ E PRLVHR+D+D SG+L++ RT A L
Sbjct: 104 KPAGLAVQGGPGITKHVDMMLDG-LREEDDPRPRLVHRIDKDTSGLLLLARTPGVAAKLA 162
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKV 323
+ FR R +++ Y A+V+G P G + L ++
Sbjct: 163 ASFR-------------GRDVKKIYWAVVVGRPDPLSGEIDQPLARL 196
[163][TOP]
>UniRef100_C6V544 Pseudouridine synthase n=1 Tax=Neorickettsia risticii str. Illinois
RepID=C6V544_NEORI
Length = 305
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/108 (33%), Positives = 56/108 (51%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G PVQ G I S+D S + EY R+VHRLD+ +G+L+ +T +A L
Sbjct: 105 KPFGFPVQSGYGITTSIDNAMKS-INPEY----RVVHRLDKHTTGVLIFAKTLDAARELW 159
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVV 326
+F NR+++++Y A+VIG + +G V + KV+
Sbjct: 160 RLF-------------SNRLVKKRYLAIVIGELKEKKGAVDCYINKVL 194
[164][TOP]
>UniRef100_B4WEA2 Pseudouridine synthase n=1 Tax=Brevundimonas sp. BAL3
RepID=B4WEA2_9CAUL
Length = 341
Score = 54.3 bits (129), Expect = 4e-06
Identities = 37/111 (33%), Positives = 56/111 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG R +D + ++ E + PRLVHRLDRD SG+L++G+ +A L
Sbjct: 116 KPHGLAVQGGTKTSRHVDRLLSAW--GEGMDRPRLVHRLDRDTSGVLLLGKGPEAAKRLA 173
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDN 335
F R ++ Y A+VIG P+ G + L K +++
Sbjct: 174 GAF-------------ARRQAKKTYWAIVIGNPKPYSGQIDMPLKKTGIND 211
[165][TOP]
>UniRef100_Q9ZDR7 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Rickettsia
prowazekii RepID=RLUC_RICPR
Length = 303
Score = 54.3 bits (129), Expect = 4e-06
Identities = 35/106 (33%), Positives = 58/106 (54%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP + QGG I S+D A L Y+ ++ +LVHRLD++ SG+L++ + S+ LH
Sbjct: 103 KPASLATQGGSKINLSIDS-ALKYLNYQGADF-KLVHRLDKETSGLLLIAKNYLSSVKLH 160
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
+ F+EK ++ +KY A+ G P + G V +++GK
Sbjct: 161 NAFKEK-------------LVIKKYFAITYGRPVKNVGTVKSNIGK 193
[166][TOP]
>UniRef100_Q3YSF8 Pseudouridine synthase n=1 Tax=Ehrlichia canis str. Jake
RepID=Q3YSF8_EHRCJ
Length = 308
Score = 53.9 bits (128), Expect = 5e-06
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGR-TQTSATVL 179
KP G+ VQGG ++ S+ + K E R+VHRLD+D SGIL++ R + S ++
Sbjct: 105 KPAGVSVQGGTKVRISISDILD---KIRDGESMRIVHRLDKDTSGILMLARNARASRLIM 161
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
H +NR +++KY AL G P+ G + S+ K
Sbjct: 162 HEF--------------KNRRVEKKYLALTQGIPKNDVGEINHSITK 194
[167][TOP]
>UniRef100_Q2GG61 Pseudouridine synthase n=1 Tax=Ehrlichia chaffeensis str. Arkansas
RepID=Q2GG61_EHRCR
Length = 307
Score = 53.5 bits (127), Expect = 7e-06
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGR-TQTSATVL 179
KP G+ VQGG +K S+ + K E ++VHRLD+D SGIL++ R + S ++
Sbjct: 105 KPAGISVQGGTKVKISISDIVD---KIRDGESMKIVHRLDKDTSGILMLARNARISRLIM 161
Query: 180 HSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
H +NR +++KY AL G P+ G + S+ K
Sbjct: 162 HEF--------------KNRRVEKKYLALTQGIPKNDIGQINHSIIK 194
[168][TOP]
>UniRef100_C7HWZ6 Pseudouridine synthase, RluA family n=1 Tax=Thiomonas intermedia
K12 RepID=C7HWZ6_THIIN
Length = 329
Score = 53.5 bits (127), Expect = 7e-06
Identities = 37/113 (32%), Positives = 57/113 (50%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ V GG + S V+ A ++ LVHRLDRD SG+L++ + +++ T LH
Sbjct: 102 KPEGVAVHGGSGV--SFGVIEALRAARPTAKFLELVHRLDRDTSGLLLIAKKRSALTTLH 159
Query: 183 SIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNGK 341
+ RE R ++Y ALV G R ++ A L K ++ NG+
Sbjct: 160 AALRE-------------RHADKRYLALVAGLWTRGAVMIEAPLHKYLLANGE 199
[169][TOP]
>UniRef100_C4YV19 Pseudouridine synthase n=1 Tax=Rickettsia endosymbiont of Ixodes
scapularis RepID=C4YV19_9RICK
Length = 303
Score = 53.5 bits (127), Expect = 7e-06
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKY-EYSEPP-RLVHRLDRDCSGILVMGRTQTSATV 176
KP G+ QGG IK S+D S LKY Y +LVHRLD++ SG+L++ + S+
Sbjct: 103 KPAGLATQGGSKIKLSID----SALKYLNYKGADFKLVHRLDKETSGLLLIAKNYLSSVK 158
Query: 177 LHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGK 320
LH +F+EK ++ + Y A+ G P + G V +++ K
Sbjct: 159 LHDVFKEK-------------LVVKTYFAVTYGKPIKNVGEVRSNIEK 193
[170][TOP]
>UniRef100_Q21CU8 Pseudouridine synthase n=1 Tax=Rhodopseudomonas palustris BisB18
RepID=Q21CU8_RHOPB
Length = 240
Score = 53.1 bits (126), Expect = 9e-06
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +3
Query: 3 KPPGMPV----QGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSA 170
KP G+PV +GG +++ S + L+Y PP L HRLDRD SG LV+GR + +
Sbjct: 35 KPAGLPVHRGPKGGANLESSFEF-----LRYGLPRPPVLAHRLDRDTSGCLVLGRHRKAT 89
Query: 171 TVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
L +F+ + + Y A+V G P G + +G++ + G
Sbjct: 90 ASLGLLFKHGR-------------ISKTYWAVVEGGPIEDEGTIELPIGRLNAERG 132
[171][TOP]
>UniRef100_A5E917 Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. BTAi1
RepID=A5E917_BRASB
Length = 295
Score = 53.1 bits (126), Expect = 9e-06
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +3
Query: 3 KPPGMPV----QGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSA 170
KP G+PV +GG +++ S D L++ PP L HRLD++ SG LV+GR + +
Sbjct: 17 KPAGIPVHKGPKGGANLEASFDA-----LRFGLPRPPVLAHRLDKETSGCLVLGRHRKAT 71
Query: 171 TVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
L +F+ + + + Y A+V G P G++ LGK+ + G
Sbjct: 72 ASLGLLFK-------------HGKISKTYWAVVEGGPDADEGVIELPLGKLNAERG 114
[172][TOP]
>UniRef100_A4YKA7 Pseudouridine synthase n=1 Tax=Bradyrhizobium sp. ORS278
RepID=A4YKA7_BRASO
Length = 300
Score = 53.1 bits (126), Expect = 9e-06
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +3
Query: 3 KPPGMPV----QGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSA 170
KP G+PV +GG +++ S D L++ PP L HRLD++ SG LV+GR + +
Sbjct: 27 KPAGIPVHKGPKGGPNLEASFDA-----LRFGLPRPPVLAHRLDKETSGCLVLGRHRKAT 81
Query: 171 TVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLGKVVVDNG 338
L +F+ + + + Y A+V G P G++ LGK+ + G
Sbjct: 82 ASLGLLFK-------------HGKISKTYWAVVEGGPEADEGVIELPLGKLNAERG 124
[173][TOP]
>UniRef100_P70863 Pseudouridine synthase (Fragment) n=1 Tax=Bartonella bacilliformis
RepID=P70863_BARBA
Length = 221
Score = 53.1 bits (126), Expect = 9e-06
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSLDVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 182
KP G+ VQGG + R +D + + + + E PRLVHRLDR+ SG+LV+ R+ +A L
Sbjct: 139 KPAGLAVQGGSGLTRHVDGMLEAW-RNKKGEKPRLVHRLDRETSGLLVVARSXXAAQALT 197
Query: 183 SIFREK 200
+ FR +
Sbjct: 198 AAFRTR 203
[174][TOP]
>UniRef100_A7RM79 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RM79_NEMVE
Length = 330
Score = 53.1 bits (126), Expect = 9e-06
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Frame = +3
Query: 3 KPPGMPVQGGIDIKRSL-DVVAASCLKYEYSEPPRLVHRLDR----------DCSGILVM 149
KP G+PV GG + S+ +++ Y P L HRLD+ DCSG+L++
Sbjct: 37 KPYGLPVHGGPGVVLSVAELLEEFAAIKNYQNKPELAHRLDKYGTDYTIMLIDCSGVLLL 96
Query: 150 GRTQTSATVLHSIFREKTSSASDDLGTENRVLQRKYRALVIGCPRRPRGLVTASLG 317
R +T+A + +F ++R+++++Y A+ +G PR G ++ +G
Sbjct: 97 TRNKTAAQKIAEMF-------------QSRMVKKRYLAVSVGVPRYEEGTISIPVG 139