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[1][TOP] >UniRef100_Q5QEB2 Elongation factor Ts n=1 Tax=Chlamydomonas reinhardtii RepID=Q5QEB2_CHLRE Length = 1013 Score = 244 bits (624), Expect = 2e-63 Identities = 126/126 (100%), Positives = 126/126 (100%) Frame = +2 Query: 65 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 244 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED Sbjct: 1 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 60 Query: 245 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 424 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS Sbjct: 61 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 120 Query: 425 VDAEKK 442 VDAEKK Sbjct: 121 VDAEKK 126 [2][TOP] >UniRef100_Q5QEB1 Plastid-specific ribosomal protein-7 n=1 Tax=Chlamydomonas reinhardtii RepID=Q5QEB1_CHLRE Length = 560 Score = 244 bits (624), Expect = 2e-63 Identities = 126/126 (100%), Positives = 126/126 (100%) Frame = +2 Query: 65 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 244 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED Sbjct: 1 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 60 Query: 245 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 424 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS Sbjct: 61 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 120 Query: 425 VDAEKK 442 VDAEKK Sbjct: 121 VDAEKK 126 [3][TOP] >UniRef100_Q5QEB0 Chloroplast polyprotein of elongation factor Ts n=1 Tax=Chlamydomonas reinhardtii RepID=Q5QEB0_CHLRE Length = 603 Score = 244 bits (624), Expect = 2e-63 Identities = 126/126 (100%), Positives = 126/126 (100%) Frame = +2 Query: 65 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 244 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED Sbjct: 1 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 60 Query: 245 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 424 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS Sbjct: 61 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 120 Query: 425 VDAEKK 442 VDAEKK Sbjct: 121 VDAEKK 126 [4][TOP] >UniRef100_A8J641 Plastid-specific ribosomal protein 7 n=1 Tax=Chlamydomonas reinhardtii RepID=A8J641_CHLRE Length = 560 Score = 244 bits (624), Expect = 2e-63 Identities = 126/126 (100%), Positives = 126/126 (100%) Frame = +2 Query: 65 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 244 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED Sbjct: 1 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 60 Query: 245 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 424 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS Sbjct: 61 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 120 Query: 425 VDAEKK 442 VDAEKK Sbjct: 121 VDAEKK 126 [5][TOP] >UniRef100_A8J639 Polyprotein of PSRP-7 and EF-Ts, splice variant 2 n=1 Tax=Chlamydomonas reinhardtii RepID=A8J639_CHLRE Length = 603 Score = 244 bits (624), Expect = 2e-63 Identities = 126/126 (100%), Positives = 126/126 (100%) Frame = +2 Query: 65 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 244 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED Sbjct: 1 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 60 Query: 245 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 424 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS Sbjct: 61 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 120 Query: 425 VDAEKK 442 VDAEKK Sbjct: 121 VDAEKK 126 [6][TOP] >UniRef100_A8J637 Elongation factor Ts n=1 Tax=Chlamydomonas reinhardtii RepID=A8J637_CHLRE Length = 1013 Score = 244 bits (624), Expect = 2e-63 Identities = 126/126 (100%), Positives = 126/126 (100%) Frame = +2 Query: 65 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 244 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED Sbjct: 1 MLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLED 60 Query: 245 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 424 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS Sbjct: 61 VKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLS 120 Query: 425 VDAEKK 442 VDAEKK Sbjct: 121 VDAEKK 126 [7][TOP] >UniRef100_Q2L128 Transcription accessory protein n=1 Tax=Bordetella avium 197N RepID=Q2L128_BORA1 Length = 790 Score = 79.0 bits (193), Expect = 2e-13 Identities = 57/150 (38%), Positives = 78/150 (52%), Gaps = 15/150 (10%) Frame = +2 Query: 38 SSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVR---PSVR-VFAEA- 202 S++ P + ++ + A +KA R ++ G FT R P+VR +FAE Sbjct: 585 SAVHPEAYPVVERI--VARIKADVRQIIGQREALKGVSPADFTDERFGLPTVRDIFAELE 642 Query: 203 -----PAAEQAAKAIK-----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 P E K L+D+ G EG VT V FGAFV+ G + +GLVHIS L Sbjct: 643 KPGRDPRPEFKTAQFKEGVETLKDLHPGMLLEGVVTNVANFGAFVDIGVHQDGLVHISAL 702 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F K+ +DVV+ GQ VTVKVL VD ++K Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVLEVDVQRK 732 [8][TOP] >UniRef100_A9NHV1 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHV1_ACHLI Length = 724 Score = 79.0 bits (193), Expect = 2e-13 Identities = 39/70 (55%), Positives = 51/70 (72%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+K G E EGTV V +FGAFV+ G +GLVHISKL++ F K+ KDVV GQ VT Sbjct: 643 LSIEDLKVGMELEGTVRNVTDFGAFVDVGLKNDGLVHISKLSNKFVKHPKDVVSVGQIVT 702 Query: 410 VKVLSVDAEK 439 V VL++D +K Sbjct: 703 VWVLNIDRDK 712 [9][TOP] >UniRef100_UPI0001B44404 hypothetical protein LmonocytFSL_06170 n=1 Tax=Listeria monocytogenes FSL J2-003 RepID=UPI0001B44404 Length = 725 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 710 [10][TOP] >UniRef100_UPI0001B43D06 hypothetical protein LmonocytogFSL_06115 n=1 Tax=Listeria monocytogenes FSL N1-017 RepID=UPI0001B43D06 Length = 725 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 710 [11][TOP] >UniRef100_UPI0001B43B10 hypothetical protein LmonF_10391 n=1 Tax=Listeria monocytogenes FSL F2-515 RepID=UPI0001B43B10 Length = 301 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 185 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 244 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 245 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 286 [12][TOP] >UniRef100_Q92DB8 Lin0897 protein n=1 Tax=Listeria innocua RepID=Q92DB8_LISIN Length = 725 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 710 [13][TOP] >UniRef100_Q8Y8K3 Lmo0898 protein n=2 Tax=Listeria monocytogenes RepID=Q8Y8K3_LISMO Length = 725 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 710 [14][TOP] >UniRef100_Q721R8 S1 RNA binding domain protein n=1 Tax=Listeria monocytogenes str. 4b F2365 RepID=Q721R8_LISMF Length = 725 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 710 [15][TOP] >UniRef100_A0AH17 Complete genome n=1 Tax=Listeria welshimeri serovar 6b str. SLCC5334 RepID=A0AH17_LISW6 Length = 725 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 710 [16][TOP] >UniRef100_Q4EKE0 S1 RNA binding domain protein n=1 Tax=Listeria monocytogenes str. 4b H7858 RepID=Q4EKE0_LISMO Length = 725 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 710 [17][TOP] >UniRef100_C8KAD9 S1 RNA binding domain-containing protein n=2 Tax=Listeria monocytogenes RepID=C8KAD9_LISMO Length = 725 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 710 [18][TOP] >UniRef100_C8K102 S1 RNA-binding domain-containing protein n=2 Tax=Listeria monocytogenes RepID=C8K102_LISMO Length = 725 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 710 [19][TOP] >UniRef100_C8JTR8 S1 RNA binding domain-containing protein n=1 Tax=Listeria monocytogenes FSL N3-165 RepID=C8JTR8_LISMO Length = 725 Score = 78.6 bits (192), Expect = 2e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKK 710 [20][TOP] >UniRef100_UPI0001B41F87 hypothetical protein LmonL_19961 n=1 Tax=Listeria monocytogenes LO28 RepID=UPI0001B41F87 Length = 105 Score = 78.2 bits (191), Expect = 3e-13 Identities = 41/81 (50%), Positives = 51/81 (62%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E PA I +ED+K+G E +GTV V +FGAFV+ G +GLVHISKL++ F KN Sbjct: 10 ELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNP 69 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G VTV V VD +K Sbjct: 70 MDVVSVGDVVTVWVDEVDTKK 90 [21][TOP] >UniRef100_B8DG61 Putative uncharacterized protein n=1 Tax=Listeria monocytogenes HCC23 RepID=B8DG61_LISMH Length = 725 Score = 78.2 bits (191), Expect = 3e-13 Identities = 44/102 (43%), Positives = 57/102 (55%) Frame = +2 Query: 134 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 313 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 314 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 G +GLVHISKL++ F KN DVV G VTV V VD +K Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDIVTVWVDEVDTKK 710 [22][TOP] >UniRef100_A6VTC2 RNA binding S1 domain protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTC2_MARMS Length = 720 Score = 77.8 bits (190), Expect = 3e-13 Identities = 38/70 (54%), Positives = 50/70 (71%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 KLEDV+EG EG VT V FGAFV+ G + +GL+HIS+LA F K+ +D+V+ GQ V V Sbjct: 642 KLEDVQEGMTLEGVVTNVAAFGAFVDLGVHQDGLIHISQLADRFVKDPRDLVRVGQVVKV 701 Query: 413 KVLSVDAEKK 442 VL VD ++K Sbjct: 702 TVLEVDVQRK 711 [23][TOP] >UniRef100_C1N2E8 Elongation factor Ts n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N2E8_9CHLO Length = 844 Score = 77.8 bits (190), Expect = 3e-13 Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Frame = +2 Query: 146 RRQVAFTGVRPSVRVFAEAPAAEQAAKAIKL------EDVKEGSEYEGTVTTVEEFGAFV 307 RR VA V V E P + +K E V G+E++G V V+E+G FV Sbjct: 29 RRAVALRATVAEVEVSEEKPKPKGKKPFVKKNVTVTDEQVVVGAEFKGVVKRVQEYGCFV 88 Query: 308 NFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 +FGA ++GLVHIS+L GF +N DVV Q+V V + S+DAEK Sbjct: 89 DFGAKSDGLVHISELKDGFVENVADVVSENQEVQVFIKSIDAEK 132 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/82 (35%), Positives = 51/82 (62%) Frame = +2 Query: 194 AEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 373 A+ A+E++ KA++ +K+G+ EG V +++ FGAFV GLVH+++++ + Sbjct: 167 AKKAASEESMKAVRA--IKKGTTVEGVVKSIQAFGAFVEIAEGVEGLVHVTEMSEDYNVK 224 Query: 374 AKDVVQPGQKVTVKVLSVDAEK 439 +D V G+ V V+VL VD +K Sbjct: 225 PEDFVTVGETVKVRVLGVDGQK 246 [24][TOP] >UniRef100_A1VC50 RNA binding S1 domain protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1VC50_DESVV Length = 723 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/90 (44%), Positives = 58/90 (64%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RP+ VFA A K++DV+ G E G VT V +FGAFV+ G + +GLVH+S+L Sbjct: 627 RPAFEVFAFAEGVN------KVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQL 680 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F ++ +VV PG+KV V+VL VD +++ Sbjct: 681 ADRFVRDPAEVVAPGRKVRVRVLDVDRQRE 710 [25][TOP] >UniRef100_Q729V2 S1 RNA binding domain protein n=2 Tax=Desulfovibrio vulgaris RepID=Q729V2_DESVH Length = 723 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/90 (44%), Positives = 58/90 (64%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RP+ VFA A K++DV+ G E G VT V +FGAFV+ G + +GLVH+S+L Sbjct: 627 RPAFEVFAFAEGVN------KVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQL 680 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F ++ +VV PG+KV V+VL VD +++ Sbjct: 681 ADRFVRDPAEVVAPGRKVRVRVLDVDRQRE 710 [26][TOP] >UniRef100_A9U7P4 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7P4_PHYPA Length = 398 Score = 77.0 bits (188), Expect = 6e-13 Identities = 41/89 (46%), Positives = 55/89 (61%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RP E P +K+ED+ G E +GTV V +FGAFV+ G ++GLVHIS+L Sbjct: 296 RPGRDPREELPLPIFRTDVLKIEDLTPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQL 355 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 +SG+ K+ DVV G VTV VL+VD +K Sbjct: 356 SSGYVKHPMDVVSVGDNVTVWVLNVDLKK 384 [27][TOP] >UniRef100_UPI0001851521 transcription accessory protein n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851521 Length = 723 Score = 76.6 bits (187), Expect = 8e-13 Identities = 40/70 (57%), Positives = 48/70 (68%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+ G E +GTV V +FGAFV+ G +GLVHISKL GF K+ DVV GQ VT Sbjct: 640 LKLEDLAVGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPLDVVSVGQVVT 699 Query: 410 VKVLSVDAEK 439 V V SVD +K Sbjct: 700 VWVDSVDVQK 709 [28][TOP] >UniRef100_UPI00018506B3 transcription accessory protein n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI00018506B3 Length = 727 Score = 76.6 bits (187), Expect = 8e-13 Identities = 40/70 (57%), Positives = 48/70 (68%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+ G E +GTV V +FGAFV+ G +GLVHISKL GF K+ DVV GQ VT Sbjct: 644 LKLEDLAVGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPLDVVSVGQVVT 703 Query: 410 VKVLSVDAEK 439 V V SVD +K Sbjct: 704 VWVDSVDVQK 713 [29][TOP] >UniRef100_A1APM8 RNA binding S1 domain protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APM8_PELPD Length = 723 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/70 (54%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ED++EG +G VT V FGAFV+ G + +GLVHIS LA+ F K+ D VQ GQ V V Sbjct: 642 KIEDLREGMVLQGVVTNVTAFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQAGQLVRV 701 Query: 413 KVLSVDAEKK 442 KVLS D ++K Sbjct: 702 KVLSADPKRK 711 [30][TOP] >UniRef100_A8W0E6 Stage II sporulation E family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8W0E6_9BACI Length = 724 Score = 76.6 bits (187), Expect = 8e-13 Identities = 38/70 (54%), Positives = 48/70 (68%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +++ED+++G E EGTV V +FGAFV+ G +GLVH+SKL GF KN DVV G VT Sbjct: 643 LQMEDLEKGMELEGTVRNVVDFGAFVDIGVKQDGLVHVSKLRKGFVKNPMDVVNVGDVVT 702 Query: 410 VKVLSVDAEK 439 V V SVD K Sbjct: 703 VWVDSVDVHK 712 [31][TOP] >UniRef100_Q65N46 Putative RNA binding protein containing S1 RNA binding domain,YdcI n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65N46_BACLD Length = 720 Score = 76.3 bits (186), Expect = 1e-12 Identities = 41/81 (50%), Positives = 50/81 (61%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P ++LED+KEG E +GTV V +FGAFV+ G +GLVHISKL+ F K+ Sbjct: 629 EVPKPLLKTDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSHSFVKHP 688 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G VTV V VDA K Sbjct: 689 LDVVSVGDIVTVWVEDVDAAK 709 [32][TOP] >UniRef100_A6CTJ1 YdcI n=1 Tax=Bacillus sp. SG-1 RepID=A6CTJ1_9BACI Length = 717 Score = 76.3 bits (186), Expect = 1e-12 Identities = 43/90 (47%), Positives = 53/90 (58%) Frame = +2 Query: 170 VRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISK 349 VRP + E A +KLED++ G E +GTV V +FGAFV+ G +GLVHISK Sbjct: 618 VRPGRDLRDELSAPLLKKDVLKLEDLQPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISK 677 Query: 350 LASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 L GF K+ DVV G VTV V S D +K Sbjct: 678 LRKGFVKHPLDVVSVGDVVTVWVESADVKK 707 [33][TOP] >UniRef100_UPI0001788115 Tex-like protein protein-like protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788115 Length = 740 Score = 75.9 bits (185), Expect = 1e-12 Identities = 41/89 (46%), Positives = 54/89 (60%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RP E P +K+ED+ G E +GTV V +FGAFV+ G ++GLVHIS+L Sbjct: 636 RPGRDPREELPLPIFRQDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQL 695 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 + GF K+ DVV G VTV VL+VD +K Sbjct: 696 SDGFVKHPMDVVSVGDNVTVWVLNVDLKK 724 [34][TOP] >UniRef100_UPI00005DC0B2 emb2726 (embryo defective 2726); RNA binding / translation elongation factor n=1 Tax=Arabidopsis thaliana RepID=UPI00005DC0B2 Length = 709 Score = 75.9 bits (185), Expect = 1e-12 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 25/164 (15%) Frame = +2 Query: 26 RSLNSSIFPSSRRMLRELGRTATV-KAHGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE 199 R I S++R++ L + + HGR VL P R G VA + S V AE Sbjct: 35 RKAGKQILSSTQRLVLPLSTSLRLFPTHGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAE 94 Query: 200 -----------APAAEQAAK------------AIKLEDVKEGSEYEGTVTTVEEFGAFVN 310 APA ++ A+K E++ G+ + G V ++ FGAFV+ Sbjct: 95 DKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVD 154 Query: 311 FGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 FGA T+GLVH+S+L+ F K+ VV GQ+V V+++ D E K Sbjct: 155 FGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADIESK 198 [35][TOP] >UniRef100_Q7WGI8 Transcription accessory protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WGI8_BORBR Length = 791 Score = 75.9 bits (185), Expect = 1e-12 Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 15/150 (10%) Frame = +2 Query: 38 SSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVR---PSVR-VFAEA- 202 S++ P + ++ + A +KA R ++ G FT R P+VR +FAE Sbjct: 585 SAVHPEAYPVVERI--VARIKADVRHIIGQREALKGVSPSDFTDERFGLPTVRDIFAELE 642 Query: 203 -----PAAEQAAKAIK-----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 P E K L D+ G EG VT V FGAFV+ G + +GLVHIS L Sbjct: 643 KPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISAL 702 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F K+ +DVV+ GQ VTVKVL VD +K Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVLEVDVARK 732 [36][TOP] >UniRef100_Q7W5T7 Transcription accessory protein n=1 Tax=Bordetella parapertussis RepID=Q7W5T7_BORPA Length = 791 Score = 75.9 bits (185), Expect = 1e-12 Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 15/150 (10%) Frame = +2 Query: 38 SSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVR---PSVR-VFAEA- 202 S++ P + ++ + A +KA R ++ G FT R P+VR +FAE Sbjct: 585 SAVHPEAYPVVERI--VARIKADVRHIIGQREALKGVSPSDFTDERFGLPTVRDIFAELE 642 Query: 203 -----PAAEQAAKAIK-----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 P E K L D+ G EG VT V FGAFV+ G + +GLVHIS L Sbjct: 643 KPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISAL 702 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F K+ +DVV+ GQ VTVKVL VD +K Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVLEVDVARK 732 [37][TOP] >UniRef100_A9IIW4 Transcription accessory protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IIW4_BORPD Length = 791 Score = 75.9 bits (185), Expect = 1e-12 Identities = 56/150 (37%), Positives = 76/150 (50%), Gaps = 15/150 (10%) Frame = +2 Query: 38 SSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVR---PSVR-VFAEA- 202 S++ P + ++ + A +KA + ++ G FT R P+VR +FAE Sbjct: 585 SAVHPEAYPVVERI--VAKIKADVQQIIGQREALKGVSPADFTDERFGLPTVRDIFAELE 642 Query: 203 -----PAAEQAAKAIK-----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 P E K L D+ G EG VT V FGAFV+ G + +GLVHIS L Sbjct: 643 KPGRDPRPEFKTAQFKDGVETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISAL 702 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F K+ +DVV+ GQ VTVKVL VD +K Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVLEVDVARK 732 [38][TOP] >UniRef100_A8FA76 RNA binding transcriptional accessory protein n=1 Tax=Bacillus pumilus SAFR-032 RepID=A8FA76_BACP2 Length = 719 Score = 75.9 bits (185), Expect = 1e-12 Identities = 41/81 (50%), Positives = 51/81 (62%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P +KLED+K+G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ Sbjct: 628 EVPKPLLKTDVLKLEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNRFVKHP 687 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G VTV V SVD K Sbjct: 688 LDVVSVGDIVTVWVDSVDQAK 708 [39][TOP] >UniRef100_Q2BJK7 Conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJK7_9GAMM Length = 714 Score = 75.9 bits (185), Expect = 1e-12 Identities = 36/69 (52%), Positives = 50/69 (72%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 + D++ G EGT++ V FGAFV+ G + +GLVHIS+LA+ F K+ DVV PGQ VTV+ Sbjct: 636 ITDLQVGMRLEGTISNVTNFGAFVDLGVHQDGLVHISQLANKFVKDPHDVVSPGQIVTVR 695 Query: 416 VLSVDAEKK 442 VL VD ++K Sbjct: 696 VLEVDEKRK 704 [40][TOP] >UniRef100_B4AIJ4 Protein YhgF n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AIJ4_BACPU Length = 719 Score = 75.9 bits (185), Expect = 1e-12 Identities = 41/81 (50%), Positives = 51/81 (62%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P +KLED+K+G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ Sbjct: 628 EVPKPLLKTDVLKLEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNRFVKHP 687 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G VTV V SVD K Sbjct: 688 LDVVSVGDIVTVWVDSVDQAK 708 [41][TOP] >UniRef100_Q9SZD6 Elongation factor Ts n=1 Tax=Arabidopsis thaliana RepID=Q9SZD6_ARATH Length = 953 Score = 75.9 bits (185), Expect = 1e-12 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 25/164 (15%) Frame = +2 Query: 26 RSLNSSIFPSSRRMLRELGRTATV-KAHGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE 199 R I S++R++ L + + HGR VL P R G VA + S V AE Sbjct: 35 RKAGKQILSSTQRLVLPLSTSLRLFPTHGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAE 94 Query: 200 -----------APAAEQAAK------------AIKLEDVKEGSEYEGTVTTVEEFGAFVN 310 APA ++ A+K E++ G+ + G V ++ FGAFV+ Sbjct: 95 DKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVD 154 Query: 311 FGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 FGA T+GLVH+S+L+ F K+ VV GQ+V V+++ D E K Sbjct: 155 FGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADIESK 198 [42][TOP] >UniRef100_Q93ZG6 AT4g29060/F19B15_90 n=1 Tax=Arabidopsis thaliana RepID=Q93ZG6_ARATH Length = 455 Score = 75.9 bits (185), Expect = 1e-12 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 25/164 (15%) Frame = +2 Query: 26 RSLNSSIFPSSRRMLRELGRTATV-KAHGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE 199 R I S++R++ L + + HGR VL P R G VA + S V AE Sbjct: 35 RKAGKQILSSTQRLVLPLSTSLRLFPTHGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAE 94 Query: 200 -----------APAAEQAAK------------AIKLEDVKEGSEYEGTVTTVEEFGAFVN 310 APA ++ A+K E++ G+ + G V ++ FGAFV+ Sbjct: 95 DKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVD 154 Query: 311 FGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 FGA T+GLVH+S+L+ F K+ VV GQ+V V+++ D E K Sbjct: 155 FGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADIESK 198 [43][TOP] >UniRef100_Q5QEA9 Elongation factor Ts n=1 Tax=Arabidopsis thaliana RepID=Q5QEA9_ARATH Length = 710 Score = 75.9 bits (185), Expect = 1e-12 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 25/164 (15%) Frame = +2 Query: 26 RSLNSSIFPSSRRMLRELGRTATV-KAHGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE 199 R I S++R++ L + + HGR VL P R G VA + S V AE Sbjct: 35 RKAGKQILSSTQRLVLPLSTSLRLFPTHGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAE 94 Query: 200 -----------APAAEQAAK------------AIKLEDVKEGSEYEGTVTTVEEFGAFVN 310 APA ++ A+K E++ G+ + G V ++ FGAFV+ Sbjct: 95 DKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVD 154 Query: 311 FGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 FGA T+GLVH+S+L+ F K+ VV GQ+V V+++ D E K Sbjct: 155 FGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADIESK 198 [44][TOP] >UniRef100_Q0WVD2 Elongation factor Ts (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q0WVD2_ARATH Length = 631 Score = 75.9 bits (185), Expect = 1e-12 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 25/164 (15%) Frame = +2 Query: 26 RSLNSSIFPSSRRMLRELGRTATV-KAHGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE 199 R I S++R++ L + + HGR VL P R G VA + S V AE Sbjct: 35 RKAGKQILSSTQRLVLPLSTSLRLFPTHGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAE 94 Query: 200 -----------APAAEQAAK------------AIKLEDVKEGSEYEGTVTTVEEFGAFVN 310 APA ++ A+K E++ G+ + G V ++ FGAFV+ Sbjct: 95 DKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVD 154 Query: 311 FGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 FGA T+GLVH+S+L+ F K+ VV GQ+V V+++ D E K Sbjct: 155 FGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADIESK 198 [45][TOP] >UniRef100_Q45388 Protein tex n=1 Tax=Bordetella pertussis RepID=TEX_BORPE Length = 791 Score = 75.9 bits (185), Expect = 1e-12 Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 15/150 (10%) Frame = +2 Query: 38 SSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVR---PSVR-VFAEA- 202 S++ P + ++ + A +KA R ++ G FT R P+VR +FAE Sbjct: 585 SAVHPEAYPVVERI--VARIKADVRHIIGQREALKGVSPSDFTDERFGLPTVRDIFAELE 642 Query: 203 -----PAAEQAAKAIK-----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 P E K L D+ G EG VT V FGAFV+ G + +GLVHIS L Sbjct: 643 KPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISAL 702 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F K+ +DVV+ GQ VTVKVL VD +K Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVLEVDVARK 732 [46][TOP] >UniRef100_A0LE14 Polyribonucleotide nucleotidyltransferase n=1 Tax=Magnetococcus sp. MC-1 RepID=PNP_MAGSM Length = 701 Score = 75.9 bits (185), Expect = 1e-12 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 2/83 (2%) Frame = +2 Query: 194 AEAPAAEQAAKAIK--LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFT 367 ++ +AEQA K IK + +V++G YEG V + +FGAFVN N +GLVHIS+LA+ Sbjct: 603 SDQASAEQAVKIIKSIVAEVEKGQVYEGKVVRITDFGAFVNILPNKDGLVHISQLANRRV 662 Query: 368 KNAKDVVQPGQKVTVKVLSVDAE 436 +N DVV+ G VTVKVL VD + Sbjct: 663 QNVTDVVKEGDVVTVKVLDVDRQ 685 [47][TOP] >UniRef100_Q03E21 Transcriptional accessory protein n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03E21_PEDPA Length = 722 Score = 75.5 bits (184), Expect = 2e-12 Identities = 41/81 (50%), Positives = 49/81 (60%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E PA + + LED+K G E +GTV V +FGAFV+ G +GLVHISKL GF K Sbjct: 631 EMPAPLLRSDVLTLEDLKPGMELQGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKQP 690 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G V V V SVD E+ Sbjct: 691 SDVVAVGDIVKVWVESVDVER 711 [48][TOP] >UniRef100_A7Z1N2 YdcI n=1 Tax=Bacillus amyloliquefaciens FZB42 RepID=A7Z1N2_BACA2 Length = 719 Score = 75.5 bits (184), Expect = 2e-12 Identities = 40/81 (49%), Positives = 51/81 (62%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P ++LED+KEG E +GTV V +FGAFV+ G +GLVHISKL++ F K+ Sbjct: 630 EVPKPLLKKDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHP 689 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G VTV V VD +K Sbjct: 690 LDVVSVGDIVTVWVEGVDVQK 710 [49][TOP] >UniRef100_C6J5S2 RNA binding S1 domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J5S2_9BACL Length = 743 Score = 75.5 bits (184), Expect = 2e-12 Identities = 40/89 (44%), Positives = 54/89 (60%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RP E P +K+ED+ G E +GTV V +FGAFV+ G +GLVHIS+L Sbjct: 640 RPGRDPREELPPPIFRTDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKNDGLVHISQL 699 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 ++G+ K+ DVV G VTV VL+VD +K Sbjct: 700 SNGYVKHPMDVVSVGDNVTVWVLNVDVKK 728 [50][TOP] >UniRef100_C2KZ93 S1 domain RNA-binding protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KZ93_9FIRM Length = 753 Score = 75.5 bits (184), Expect = 2e-12 Identities = 40/82 (48%), Positives = 53/82 (64%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 + PA ++LED+KEG +GTV V +FGAFV+ G + +GLVHIS L+ F K+ Sbjct: 662 DVPAPILREDVLELEDLKEGMVLQGTVRNVIDFGAFVDIGVHQDGLVHISALSKKFVKHP 721 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 DVV+ G V VKVLSVD +K Sbjct: 722 LDVVKLGDIVKVKVLSVDVARK 743 [51][TOP] >UniRef100_C1P9H9 RNA binding S1 domain protein n=1 Tax=Bacillus coagulans 36D1 RepID=C1P9H9_BACCO Length = 725 Score = 75.5 bits (184), Expect = 2e-12 Identities = 38/70 (54%), Positives = 48/70 (68%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E +GTV V +FGAFV+ G +GLVHISKL+ GF K+ D+V G VT Sbjct: 645 MKLEDLKPGMEMQGTVRNVVDFGAFVDVGVKEDGLVHISKLSKGFVKHPLDIVSVGDIVT 704 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 705 VWVEKVDVQK 714 [52][TOP] >UniRef100_A5ZAL1 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZAL1_9FIRM Length = 711 Score = 75.5 bits (184), Expect = 2e-12 Identities = 38/82 (46%), Positives = 54/82 (65%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P + + +D+KEG E +GTV V +FGAFV+ G + +GLVHIS++++ F K+ Sbjct: 622 EMPKPVLKSDVLDFDDLKEGMELKGTVRNVIDFGAFVDIGVHQDGLVHISEMSNKFIKHP 681 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 DVV G V V+VLSVD E+K Sbjct: 682 LDVVSVGDVVDVRVLSVDKERK 703 [53][TOP] >UniRef100_A4A335 S1 RNA binding domain protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A335_9GAMM Length = 792 Score = 75.5 bits (184), Expect = 2e-12 Identities = 39/82 (47%), Positives = 52/82 (63%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E A+ A K+ D+K EGTVT V FGAFV+ G + +GLVHIS +A F K+ Sbjct: 632 EFKTAKLQAGVEKITDLKPDMVLEGTVTNVTSFGAFVDVGVHQDGLVHISAMAEKFVKDP 691 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 +DV + G VTVKV+S+D E+K Sbjct: 692 RDVAKAGDIVTVKVMSIDVERK 713 [54][TOP] >UniRef100_C5T4L5 RNA binding S1 domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4L5_ACIDE Length = 789 Score = 75.1 bits (183), Expect = 2e-12 Identities = 35/69 (50%), Positives = 51/69 (73%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 ++D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+LA F +A++VV+ G V VK Sbjct: 658 IKDLKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVNDAREVVKTGDIVKVK 717 Query: 416 VLSVDAEKK 442 V+ VD E+K Sbjct: 718 VMEVDVERK 726 [55][TOP] >UniRef100_B7X315 RNA binding S1 domain protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X315_COMTE Length = 793 Score = 75.1 bits (183), Expect = 2e-12 Identities = 34/69 (49%), Positives = 53/69 (76%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 ++D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+++ F ++A++VV+ GQ V VK Sbjct: 658 IKDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVK 717 Query: 416 VLSVDAEKK 442 VL VD ++K Sbjct: 718 VLEVDVDRK 726 [56][TOP] >UniRef100_UPI000196798C hypothetical protein SUBVAR_02860 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=UPI000196798C Length = 719 Score = 74.7 bits (182), Expect = 3e-12 Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Frame = +2 Query: 89 ATVKAHGRSVLRPVRGPAGR--RQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSE 262 A VKA G L G + +P V P + + LED+K G E Sbjct: 591 AAVKAKGEKTLCETLGVGAPTLHDIVSELCKPGRDVRDSLPKPLLRSDVMSLEDLKPGME 650 Query: 263 YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 GTV V +FGAFV+ G + +GLVHIS++++ F K+ ++V++ G V VKVLSVD KK Sbjct: 651 LTGTVRNVIDFGAFVDLGVHQDGLVHISQISNRFIKHPREVLKVGDIVKVKVLSVDVAKK 710 [57][TOP] >UniRef100_Q5YS43 Putative RNA-binding protein n=1 Tax=Nocardia farcinica RepID=Q5YS43_NOCFA Length = 783 Score = 74.7 bits (182), Expect = 3e-12 Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Frame = +2 Query: 29 SLNSSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGV-----------R 175 +++ +P RR+L GR VLR +R PA F GV + Sbjct: 563 AVHPEAYPVVRRILEATGRRVDELIGNTGVLRSLR-PAEFTDEKF-GVPTVTDIIGELEK 620 Query: 176 PSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 355 P E AE AA K+ D+K G EG VT V FGAFV+ G + +GLVH+S ++ Sbjct: 621 PGRDPRPEFKTAEFAAGVEKVADLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMS 680 Query: 356 SGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 F K+ ++VV+ G V VKVL VD ++ Sbjct: 681 HSFVKDPREVVKSGDVVKVKVLEVDVARQ 709 [58][TOP] >UniRef100_B8I5S2 RNA binding S1 domain protein n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I5S2_CLOCE Length = 718 Score = 74.7 bits (182), Expect = 3e-12 Identities = 38/82 (46%), Positives = 51/82 (62%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P + + +ED+K+G GTV V +FGAFV+ G + +GLVHIS+LA + KN Sbjct: 627 ELPKPMLHSDVLHMEDLKQGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKYVKNP 686 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 DVV G V VK+L VD E+K Sbjct: 687 MDVVAVGDIVKVKILEVDVERK 708 [59][TOP] >UniRef100_C7ICV4 RNA binding S1 domain protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICV4_9CLOT Length = 718 Score = 74.7 bits (182), Expect = 3e-12 Identities = 39/82 (47%), Positives = 50/82 (60%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P + + +ED+K G GTV V +FGAFV+ G + +GLVHIS+LA F KN Sbjct: 627 ELPKPMLHSDVLNMEDLKAGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKFVKNP 686 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 DVV G V VKV+ VD E+K Sbjct: 687 MDVVAVGDIVKVKVIEVDVERK 708 [60][TOP] >UniRef100_UPI0001B4CC56 transcription accessory protein n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B4CC56 Length = 742 Score = 74.3 bits (181), Expect = 4e-12 Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Frame = +2 Query: 29 SLNSSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPA 208 S++ +P RRM+ G +VLR +R P + + E P Sbjct: 569 SVHPEAYPVVRRMVASSGAEVAALIGNTAVLRSLRAPDFVDETFGLPTVSDILKELEKPG 628 Query: 209 AE--QAAKAI-------KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASG 361 + A K K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ Sbjct: 629 RDPRPAFKTAVFKEGVEKIADLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKT 688 Query: 362 FTKNAKDVVQPGQKVTVKVLSVDAEKK 442 F K+ +DVV+PG V VKVL VD +K Sbjct: 689 FVKDPRDVVKPGDIVKVKVLDVDVPRK 715 [61][TOP] >UniRef100_Q2B4Z6 Transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B4Z6_9BACI Length = 723 Score = 74.3 bits (181), Expect = 4e-12 Identities = 38/70 (54%), Positives = 48/70 (68%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E +GTV V +FGAFV+ G +GLVHISKL F K+ DVV G VT Sbjct: 643 LKLEDLKPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLRKQFVKHPLDVVSVGDVVT 702 Query: 410 VKVLSVDAEK 439 V V S+D++K Sbjct: 703 VWVDSIDSQK 712 [62][TOP] >UniRef100_C9AW24 RNA binding protein S1 n=2 Tax=Enterococcus casseliflavus RepID=C9AW24_ENTCA Length = 728 Score = 74.3 bits (181), Expect = 4e-12 Identities = 38/81 (46%), Positives = 50/81 (61%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E PA + +ED+K G E +GTV V +FGAFV+ G +GLVH+SKL+ F K+ Sbjct: 634 EMPAPLLRKDVLSMEDLKPGMELKGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHP 693 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 KDVV G VTV + VD +K Sbjct: 694 KDVVSVGDVVTVWIEQVDVKK 714 [63][TOP] >UniRef100_C9A7Y3 RNA binding protein S1 n=1 Tax=Enterococcus casseliflavus EC20 RepID=C9A7Y3_ENTCA Length = 728 Score = 74.3 bits (181), Expect = 4e-12 Identities = 38/81 (46%), Positives = 50/81 (61%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E PA + +ED+K G E +GTV V +FGAFV+ G +GLVH+SKL+ F K+ Sbjct: 634 EMPAPLLRKDVLSMEDLKPGMELKGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHP 693 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 KDVV G VTV + VD +K Sbjct: 694 KDVVSVGDVVTVWIEQVDVKK 714 [64][TOP] >UniRef100_C7MX99 Transcriptional accessory protein n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MX99_SACVD Length = 775 Score = 74.3 bits (181), Expect = 4e-12 Identities = 35/69 (50%), Positives = 47/69 (68%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 LED+K G EG VT V FGAFV+ G + +GLVH+S ++ + + +DVV+PG VTVK Sbjct: 641 LEDLKPGMRLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHRYVSDPRDVVKPGDVVTVK 700 Query: 416 VLSVDAEKK 442 VL VD +K Sbjct: 701 VLDVDVPRK 709 [65][TOP] >UniRef100_C1Z9K3 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1Z9K3_PLALI Length = 568 Score = 74.3 bits (181), Expect = 4e-12 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 2/143 (1%) Frame = +2 Query: 20 RPRSLNSSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAE 199 RPRS S+ P R + + + G +R ++ G + V + Sbjct: 408 RPRSEISTHAPRLLRTKIDPSKIGLLIGPGGKNIRAIQEQTGAT-IDIEDDGTVVIASSS 466 Query: 200 APAAEQAAKAIKL--EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 373 + AE A ++ E++K G Y GTV+++++FGAF+ +GL HIS+L+ GF KN Sbjct: 467 SVGAEDALARVEAIAEEIKVGRVYNGTVSSIKDFGAFIEIAPGKDGLCHISELSDGFVKN 526 Query: 374 AKDVVQPGQKVTVKVLSVDAEKK 442 +VVQ G+K+ VKV+++D + + Sbjct: 527 VNEVVQVGEKIQVKVIAIDEQNR 549 [66][TOP] >UniRef100_C0E9B9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9B9_9CLOT Length = 717 Score = 74.3 bits (181), Expect = 4e-12 Identities = 38/82 (46%), Positives = 55/82 (67%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P + ++L+D+K G E +GTV V +FGAFV+ G + +GLVH+S+LA+ F K+ Sbjct: 622 ELPKPLLRSDVLELKDLKPGMELKGTVRNVIDFGAFVDIGVHEDGLVHVSQLANRFVKHP 681 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 DVV+ G VTV VL VD ++K Sbjct: 682 LDVVKVGDVVTVWVLDVDLKRK 703 [67][TOP] >UniRef100_B0MH09 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MH09_9FIRM Length = 713 Score = 74.3 bits (181), Expect = 4e-12 Identities = 37/71 (52%), Positives = 51/71 (71%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +++ED+KEG + +GTV V +FGAFV+ G + +GLVHIS++A F K+ +VV G V Sbjct: 634 MEMEDLKEGMKLKGTVRNVIDFGAFVDIGVHQDGLVHISQMADRFVKHPLEVVSVGDVVD 693 Query: 410 VKVLSVDAEKK 442 V VLSVD EKK Sbjct: 694 VTVLSVDLEKK 704 [68][TOP] >UniRef100_O31489 Uncharacterized protein ydcI n=1 Tax=Bacillus subtilis RepID=YDCI_BACSU Length = 719 Score = 74.3 bits (181), Expect = 4e-12 Identities = 38/70 (54%), Positives = 49/70 (70%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 ++LED+KEG E +GTV V +FGAFV+ G +GLVHISKL++ F K+ DVV G VT Sbjct: 641 LQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVT 700 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 701 VWVDGVDVQK 710 [69][TOP] >UniRef100_UPI0001AEF256 transcription accessory protein n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEF256 Length = 792 Score = 73.9 bits (180), Expect = 5e-12 Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Frame = +2 Query: 29 SLNSSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAE--- 199 S++ +P RRM++ G+ +VLR +R P F G+ + E Sbjct: 568 SVHPEAYPVVRRMVKTSGQEVAALIGNTAVLRSLR-PQDFVDETF-GLPTVTDILKELEK 625 Query: 200 -----APAAEQAA---KAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 355 PA AA K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ Sbjct: 626 PGRDPRPAFRTAAFKEGVEKISDLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMS 685 Query: 356 SGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 F K+ +DVV+PG V VKVL VD +K Sbjct: 686 KTFVKDPRDVVKPGDIVKVKVLDVDIPRK 714 [70][TOP] >UniRef100_A9BZV4 RNA binding S1 domain protein n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BZV4_DELAS Length = 786 Score = 73.9 bits (180), Expect = 5e-12 Identities = 34/69 (49%), Positives = 52/69 (75%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 ++D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+++ F ++A++VV+ GQ V VK Sbjct: 658 IKDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVK 717 Query: 416 VLSVDAEKK 442 VL VD +K Sbjct: 718 VLEVDVARK 726 [71][TOP] >UniRef100_C7QJM7 RNA binding S1 domain protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJM7_CATAD Length = 838 Score = 73.9 bits (180), Expect = 5e-12 Identities = 56/149 (37%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Frame = +2 Query: 29 SLNSSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEA-- 202 S++ +P RR+L G LR +R PA F GV + AE Sbjct: 576 SVHPEAYPVVRRILASTGSGIKELIGDTKTLRALR-PAEFADDTF-GVPTVTDILAELEK 633 Query: 203 ------PAAEQAA---KAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 355 PA + A K+ D++ G EG VT V FGAFV+ G + +GLVHIS L+ Sbjct: 634 PGRDPRPAFKTATFKEGVEKIGDLQPGMILEGVVTNVAAFGAFVDVGVHQDGLVHISALS 693 Query: 356 SGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 F K+ +DVV+PG V VKVL VDA +K Sbjct: 694 KTFVKDPRDVVKPGDVVRVKVLDVDAVRK 722 [72][TOP] >UniRef100_C2C0H7 S1 domain RNA-binding protein n=1 Tax=Listeria grayi DSM 20601 RepID=C2C0H7_LISGR Length = 726 Score = 73.9 bits (180), Expect = 5e-12 Identities = 38/70 (54%), Positives = 46/70 (65%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +K+ED+K G E +GTV V +FGAFV+ G +GLVHISKL+ F KN DVV G VT Sbjct: 642 VKMEDLKPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFIKNPMDVVSVGDIVT 701 Query: 410 VKVLSVDAEK 439 V V VD K Sbjct: 702 VWVEEVDLNK 711 [73][TOP] >UniRef100_Q1WSR3 Transcription accessory protein n=1 Tax=Lactobacillus salivarius UCC118 RepID=Q1WSR3_LACS1 Length = 723 Score = 73.6 bits (179), Expect = 7e-12 Identities = 36/71 (50%), Positives = 48/71 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +K+ED+K G + EGTV V +FGAFV+ G +GLVH+SKL+ + N +DVV GQ VT Sbjct: 642 LKIEDLKAGMQLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVT 701 Query: 410 VKVLSVDAEKK 442 V V VD +K Sbjct: 702 VWVEDVDLNRK 712 [74][TOP] >UniRef100_Q1DCH5 S1 RNA binding domain protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DCH5_MYXXD Length = 783 Score = 73.6 bits (179), Expect = 7e-12 Identities = 34/69 (49%), Positives = 51/69 (73%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 LEDVKEG +G VT V FGAFV+ G + +GLVH+S++++ F K+ +VV+ G ++TV+ Sbjct: 637 LEDVKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQISTRFVKDPSEVVKVGDRLTVR 696 Query: 416 VLSVDAEKK 442 VL+VD +K Sbjct: 697 VLTVDLARK 705 [75][TOP] >UniRef100_C6E3L9 RNA binding S1 domain protein n=1 Tax=Geobacter sp. M21 RepID=C6E3L9_GEOSM Length = 756 Score = 73.6 bits (179), Expect = 7e-12 Identities = 36/71 (50%), Positives = 48/71 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + + D+KEG +G VT V FGAFV+ G + +GLVH+S+L FTK+ D V+ GQ V Sbjct: 641 VTIADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLTHRFTKDPNDAVKVGQIVK 700 Query: 410 VKVLSVDAEKK 442 VKVLS D E+K Sbjct: 701 VKVLSADPERK 711 [76][TOP] >UniRef100_B8HDI0 RNA binding S1 domain protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HDI0_ARTCA Length = 830 Score = 73.6 bits (179), Expect = 7e-12 Identities = 36/70 (51%), Positives = 48/70 (68%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D+K G EGTVT V FGAFV+ G + +GLVH+S LA+ F + ++VV+ GQ V V Sbjct: 656 KISDLKPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSGQVVRV 715 Query: 413 KVLSVDAEKK 442 KVL D E+K Sbjct: 716 KVLEADPERK 725 [77][TOP] >UniRef100_C8NGU9 Histidine triad domain-containing protein n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NGU9_9LACT Length = 751 Score = 73.6 bits (179), Expect = 7e-12 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +K+ED++ G E EGTV V +FGAFV+ G +GLVHISKL GF K+ DVV G VT Sbjct: 667 LKMEDLQVGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVT 726 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 727 VWVTELDLKK 736 [78][TOP] >UniRef100_C3BEW6 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BEW6_9BACI Length = 722 Score = 73.6 bits (179), Expect = 7e-12 Identities = 39/70 (55%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 702 VWVDDVDMKK 711 [79][TOP] >UniRef100_C3AGL6 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=2 Tax=Bacillus mycoides RepID=C3AGL6_BACMY Length = 722 Score = 73.6 bits (179), Expect = 7e-12 Identities = 39/70 (55%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 702 VWVDDVDMKK 711 [80][TOP] >UniRef100_C2Z291 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=2 Tax=Bacillus cereus RepID=C2Z291_BACCE Length = 722 Score = 73.6 bits (179), Expect = 7e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [81][TOP] >UniRef100_A4EBC2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBC2_9ACTN Length = 442 Score = 73.6 bits (179), Expect = 7e-12 Identities = 37/82 (45%), Positives = 54/82 (65%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 +AP + A+ ++D++ G E +GTV V +FGAFV+ G + +GLVHISKLA+ F K+ Sbjct: 351 DAPEVVFSRSALSIDDLEPGMELKGTVRNVVDFGAFVDVGVHQDGLVHISKLANRFVKHP 410 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 DVV+ G V V V VD ++K Sbjct: 411 SDVVRVGDTVKVWVEKVDRDRK 432 [82][TOP] >UniRef100_UPI0001B54FC8 RNA-binding S1 domain-containing protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54FC8 Length = 788 Score = 73.2 bits (178), Expect = 9e-12 Identities = 34/70 (48%), Positives = 46/70 (65%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D+K G EG VT V FGAF++ G + +GL H+S L+ F K+ +DVV+PG V V Sbjct: 650 KIADLKPGMRLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKNFVKDPRDVVKPGDIVKV 709 Query: 413 KVLSVDAEKK 442 KVL VD +K Sbjct: 710 KVLDVDVPRK 719 [83][TOP] >UniRef100_Q81IT3 Transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus ATCC 14579 RepID=Q81IT3_BACCR Length = 724 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 644 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 703 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 704 VWVDDIDTKK 713 [84][TOP] >UniRef100_B7IU35 S1 RNA binding domain protein n=1 Tax=Bacillus cereus G9842 RepID=B7IU35_BACC2 Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [85][TOP] >UniRef100_B7H4P5 S1 RNA binding domain protein n=1 Tax=Bacillus cereus B4264 RepID=B7H4P5_BACC4 Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [86][TOP] >UniRef100_C8WWJ6 Polyribonucleotide nucleotidyltransferase n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWJ6_ALIAC Length = 735 Score = 73.2 bits (178), Expect = 9e-12 Identities = 51/128 (39%), Positives = 68/128 (53%), Gaps = 12/128 (9%) Frame = +2 Query: 83 RTATVKAHGRSVLRPVRGPAGR---RQVAFTGVRPSV----RVFAEAPAAEQAAKAIKL- 238 R TVK H + R V GP GR + + TGV+ + RV+ + AEQA +A ++ Sbjct: 550 RVITVKIHPDKI-RDVIGPGGRVINKIIEETGVKIDIEQDGRVYIHSTDAEQANRAREMV 608 Query: 239 ----EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKV 406 DV+ G+ Y G VT VE+FGAFV GLVHIS+L +DV Q G + Sbjct: 609 ENIVRDVEVGATYTGKVTRVEKFGAFVEILPGKEGLVHISQLDLNRVAKVEDVCQVGDTL 668 Query: 407 TVKVLSVD 430 TVKV +D Sbjct: 669 TVKVTEID 676 [87][TOP] >UniRef100_C3IDV7 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus thuringiensis IBL 4222 RepID=C3IDV7_BACTU Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [88][TOP] >UniRef100_C3GVJ8 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus thuringiensis serovar huazhongensis BGSC 4BD1 RepID=C3GVJ8_BACTU Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [89][TOP] >UniRef100_C3DE64 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus thuringiensis serovar sotto str. T04001 RepID=C3DE64_BACTS Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [90][TOP] >UniRef100_C3CD35 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=4 Tax=Bacillus thuringiensis RepID=C3CD35_BACTU Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [91][TOP] >UniRef100_C2Y524 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus AH676 RepID=C2Y524_BACCE Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [92][TOP] >UniRef100_C2SVD2 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=3 Tax=Bacillus cereus group RepID=C2SVD2_BACCE Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [93][TOP] >UniRef100_C2RHI8 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus BDRD-ST24 RepID=C2RHI8_BACCE Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [94][TOP] >UniRef100_C2R2J5 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=4 Tax=Bacillus cereus group RepID=C2R2J5_BACCE Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [95][TOP] >UniRef100_C2MVA4 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus ATCC 10876 RepID=C2MVA4_BACCE Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [96][TOP] >UniRef100_C2EE72 S1 domain RNA-binding protein n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EE72_9LACO Length = 727 Score = 73.2 bits (178), Expect = 9e-12 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + LED+KEG + +GTV V +FGAFV+ G +GLVH+SKL GF KN DVV G V Sbjct: 645 LHLEDLKEGMKLQGTVRNVVDFGAFVDIGVKQDGLVHVSKLKKGFVKNPSDVVSVGDIVD 704 Query: 410 VKVLSVDAEK 439 V + SVD ++ Sbjct: 705 VWIDSVDEKR 714 [97][TOP] >UniRef100_B5UVX0 S1 RNA binding domain protein n=2 Tax=Bacillus cereus RepID=B5UVX0_BACCE Length = 722 Score = 73.2 bits (178), Expect = 9e-12 Identities = 38/70 (54%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [98][TOP] >UniRef100_Q6F7B6 Putative uncharacterized protein n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6F7B6_ACIAD Length = 796 Score = 72.8 bits (177), Expect = 1e-11 Identities = 35/70 (50%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 647 EIAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706 Query: 413 KVLSVDAEKK 442 +V+ VDAE+K Sbjct: 707 RVIQVDAERK 716 [99][TOP] >UniRef100_B1VG79 Putative transcriptional accessory protein n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VG79_CORU7 Length = 787 Score = 72.8 bits (177), Expect = 1e-11 Identities = 39/90 (43%), Positives = 54/90 (60%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RPS + + A E K+ DV+ G EGTVT V FGAFV+ G + +GLVH+S + Sbjct: 624 RPSFKTASLAEGVE------KVSDVRPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAM 677 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F K+ +VV GQ V VKV+ VD +++ Sbjct: 678 ADRFVKDPHEVVHSGQVVKVKVMDVDVDRQ 707 [100][TOP] >UniRef100_A9F254 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F254_SORC5 Length = 788 Score = 72.8 bits (177), Expect = 1e-11 Identities = 33/69 (47%), Positives = 48/69 (69%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 +ED+K G E EG VT V FGAFV+ G + +GLVH+S+LA F K+ +V + G+K+ V+ Sbjct: 653 MEDLKPGMELEGVVTNVTAFGAFVDIGVHQDGLVHVSQLADRFVKDPNEVAKVGEKIKVR 712 Query: 416 VLSVDAEKK 442 VL +D +K Sbjct: 713 VLEIDLVRK 721 [101][TOP] >UniRef100_A7GKE9 RNA binding S1 domain protein n=1 Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GKE9_BACCN Length = 722 Score = 72.8 bits (177), Expect = 1e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAF++ G +GLVHISKL+ F K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 702 VWVDDVDMKK 711 [102][TOP] >UniRef100_C3A0G0 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus mycoides DSM 2048 RepID=C3A0G0_BACMY Length = 722 Score = 72.8 bits (177), Expect = 1e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [103][TOP] >UniRef100_C2XNH9 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus AH603 RepID=C2XNH9_BACCE Length = 722 Score = 72.8 bits (177), Expect = 1e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [104][TOP] >UniRef100_A9VQF5 RNA binding S1 domain protein n=2 Tax=Bacillus cereus group RepID=A9VQF5_BACWK Length = 722 Score = 72.8 bits (177), Expect = 1e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [105][TOP] >UniRef100_C2PQA5 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus AH621 RepID=C2PQA5_BACCE Length = 722 Score = 72.8 bits (177), Expect = 1e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [106][TOP] >UniRef100_C0GIG1 RNA binding S1 domain protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIG1_9FIRM Length = 713 Score = 72.8 bits (177), Expect = 1e-11 Identities = 35/71 (49%), Positives = 50/71 (70%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + LED++EG E G V V +FGAFV+ G + +GL+HIS+L+ F K+ +VVQ G V Sbjct: 633 LHLEDLQEGMELTGVVRNVVDFGAFVDIGVHQDGLIHISQLSDKFVKHPLEVVQVGDVVE 692 Query: 410 VKVLSVDAEKK 442 VKV+S+D +KK Sbjct: 693 VKVISLDVKKK 703 [107][TOP] >UniRef100_B5D203 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5D203_9BACE Length = 712 Score = 72.8 bits (177), Expect = 1e-11 Identities = 35/69 (50%), Positives = 46/69 (66%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 L+D++EG E G VT + FG FV+ G NGLVH+S+LA F N DVV+ Q V VK Sbjct: 633 LDDLQEGMELPGIVTNITNFGCFVDIGIKENGLVHVSQLADRFVSNPADVVRIHQHVRVK 692 Query: 416 VLSVDAEKK 442 V+S+D E+K Sbjct: 693 VMSIDHERK 701 [108][TOP] >UniRef100_B4VGY9 S1 RNA binding domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VGY9_9CYAN Length = 718 Score = 72.8 bits (177), Expect = 1e-11 Identities = 36/70 (51%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D+K G E EG VT V FGAFV+ G + +GLVHIS+LA F + K++V+ GQ V V Sbjct: 637 EMSDLKVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKEIVKVGQVVNV 696 Query: 413 KVLSVDAEKK 442 +VLSVD + K Sbjct: 697 RVLSVDEKLK 706 [109][TOP] >UniRef100_Q3A645 Transcriptional accessory protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A645_PELCD Length = 759 Score = 72.4 bits (176), Expect = 1e-11 Identities = 46/107 (42%), Positives = 58/107 (54%) Frame = +2 Query: 122 RPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGA 301 +P R P RRQ R VR ++ D+KEG GTVT V FGA Sbjct: 622 KPGRDP--RRQFETVSFRDDVR---------------EISDLKEGMILSGTVTNVAAFGA 664 Query: 302 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 FV+ G + +GLVH+S LA F K+ +VV+ G V VKVLSVDA +K Sbjct: 665 FVDIGVHQDGLVHVSHLAHRFVKDPGEVVRVGDIVKVKVLSVDAARK 711 [110][TOP] >UniRef100_C1F2W2 S1 RNA binding domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2W2_ACIC5 Length = 753 Score = 72.4 bits (176), Expect = 1e-11 Identities = 40/81 (49%), Positives = 53/81 (65%) Frame = +2 Query: 200 APAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAK 379 AP+ + K I D+KEG EG VT V +FGAFV+ G + +GLVHIS+L++ F K Sbjct: 631 APSFLEGVKEIT--DLKEGMVLEGVVTNVTKFGAFVDVGVHQDGLVHISELSNRFIKEPS 688 Query: 380 DVVQPGQKVTVKVLSVDAEKK 442 + V+ GQ V VKVLS DA+ K Sbjct: 689 EAVKAGQIVRVKVLSADAKTK 709 [111][TOP] >UniRef100_B8FHU3 RNA binding S1 domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FHU3_DESAA Length = 752 Score = 72.4 bits (176), Expect = 1e-11 Identities = 35/70 (50%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 +++D++ G E G VT V FGAFV+ G + +GLVHIS+L+ GF KN DVV+ Q+V V Sbjct: 633 EMKDLEPGMELPGIVTNVTNFGAFVDVGVHQDGLVHISQLSDGFVKNPADVVKVQQRVKV 692 Query: 413 KVLSVDAEKK 442 +VL VD +K Sbjct: 693 RVLEVDLPRK 702 [112][TOP] >UniRef100_B5ZS43 RNA binding S1 domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B5ZS43_RHILW Length = 769 Score = 72.4 bits (176), Expect = 1e-11 Identities = 39/90 (43%), Positives = 55/90 (61%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RPS + A A + + D+K G EGTVT V FGAFV+ G + +GLVH+S+L Sbjct: 629 RPSFKTAAFAEGVNE------ISDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQL 682 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F K+ +VV+ G V V+V+ VDA++K Sbjct: 683 ADRFVKDPHEVVKAGDVVKVRVVEVDAKRK 712 [113][TOP] >UniRef100_A1W6M2 RNA binding S1 domain protein n=1 Tax=Acidovorax sp. JS42 RepID=A1W6M2_ACISJ Length = 798 Score = 72.4 bits (176), Expect = 1e-11 Identities = 34/69 (49%), Positives = 51/69 (73%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 + D++EG EGTV+ V +FGAFV+ G + +GLVH+S+L+ F ++A++VV+ G V VK Sbjct: 673 IADLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREVVKTGDIVKVK 732 Query: 416 VLSVDAEKK 442 VL VDA +K Sbjct: 733 VLEVDAARK 741 [114][TOP] >UniRef100_Q1JW78 RNA binding S1 n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JW78_DESAC Length = 747 Score = 72.4 bits (176), Expect = 1e-11 Identities = 44/109 (40%), Positives = 61/109 (55%) Frame = +2 Query: 116 VLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEF 295 +L+P R P RRQ R V+ ++ D++ G +G+VT V F Sbjct: 643 LLKPGRDP--RRQFETASFRDDVQ---------------EMSDLQPGMVLQGSVTNVAAF 685 Query: 296 GAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 GAFV+ G + +GLVHIS+LA F KN ++V+ GQ V VKVLSVD +K Sbjct: 686 GAFVDIGVHQDGLVHISELADRFVKNPAEIVKVGQVVHVKVLSVDTTRK 734 [115][TOP] >UniRef100_C2EGG6 S1 domain RNA-binding protein n=1 Tax=Lactobacillus salivarius ATCC 11741 RepID=C2EGG6_9LACO Length = 723 Score = 72.4 bits (176), Expect = 1e-11 Identities = 35/71 (49%), Positives = 48/71 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +K+ED+K G + EGTV V +FGAFV+ G +GLVH+SKL+ + N +DVV GQ VT Sbjct: 642 LKIEDLKAGMQLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVT 701 Query: 410 VKVLSVDAEKK 442 V V VD ++ Sbjct: 702 VWVEDVDLNRR 712 [116][TOP] >UniRef100_A7VC71 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VC71_9CLOT Length = 716 Score = 72.4 bits (176), Expect = 1e-11 Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 1/129 (0%) Frame = +2 Query: 59 RRMLRELG-RTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIK 235 + + +ELG T TV + + +P R P +E P ++ Sbjct: 594 KALAKELGVGTVTVTDLVKELEKPARDPR-----------------SEMPQPILRGDILE 636 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 ++D+KEG +GTV V +FGAFV+ G + +GLVHIS+++ F K+ DVV G VTVK Sbjct: 637 MKDLKEGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLDVVSVGDIVTVK 696 Query: 416 VLSVDAEKK 442 V+ VD KK Sbjct: 697 VMGVDLAKK 705 [117][TOP] >UniRef100_B8BU42 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BU42_THAPS Length = 398 Score = 72.4 bits (176), Expect = 1e-11 Identities = 31/68 (45%), Positives = 50/68 (73%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 L D++ G+ E TV T+ +GAF++ GA ++ LVH+S+L+ F N +DVV+ G+K+TV+ Sbjct: 138 LADLEIGASVEATVKTITAYGAFLDIGAKSDALVHVSRLSDDFVANVEDVVKAGEKITVR 197 Query: 416 VLSVDAEK 439 ++SVD EK Sbjct: 198 IVSVDTEK 205 [118][TOP] >UniRef100_UPI0001B4E1EC transcriptional accessory protein n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4E1EC Length = 794 Score = 72.0 bits (175), Expect = 2e-11 Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 12/150 (8%) Frame = +2 Query: 29 SLNSSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEA-- 202 S++ +P RRM++ +G+ SVLR ++ + V T P+V + Sbjct: 572 SVHPEAYPVVRRMVKTVGQEVAGLIGNTSVLRSLKP---QEFVDDTFGLPTVTDILKELE 628 Query: 203 -------PAAEQAA---KAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 PA + A K+ D+ G EG VT V FGAFV+ G + +GLVH+S + Sbjct: 629 KPGRDPRPAFKTAVFKDGVEKISDLSAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAM 688 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 + F K+ +DVV+PG V VKVL VD +K Sbjct: 689 SKTFVKDPRDVVKPGDIVKVKVLDVDIPRK 718 [119][TOP] >UniRef100_UPI0001B4186F S1 RNA binding domain protein n=1 Tax=Bacillus anthracis str. Australia 94 RepID=UPI0001B4186F Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [120][TOP] >UniRef100_UPI0001AEDDFE transcriptional accessory protein n=1 Tax=Streptomyces albus J1074 RepID=UPI0001AEDDFE Length = 807 Score = 72.0 bits (175), Expect = 2e-11 Identities = 34/70 (48%), Positives = 48/70 (68%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 KL D++ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ ++VV+PG V V Sbjct: 648 KLSDLEAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRNFVKDPREVVKPGDIVKV 707 Query: 413 KVLSVDAEKK 442 KV+ VDA +K Sbjct: 708 KVMEVDAARK 717 [121][TOP] >UniRef100_Q73ET3 S1 RNA binding domain protein n=1 Tax=Bacillus cereus ATCC 10987 RepID=Q73ET3_BACC1 Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [122][TOP] >UniRef100_Q63GW7 Probable transcription accessory protein, S1 RNA-binding domain n=1 Tax=Bacillus cereus E33L RepID=Q63GW7_BACCZ Length = 724 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 644 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 703 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 704 VWVDDIDTKK 713 [123][TOP] >UniRef100_Q47TS6 RNA binding S1:Resolvase, RNase H-like fold n=1 Tax=Thermobifida fusca YX RepID=Q47TS6_THEFY Length = 777 Score = 72.0 bits (175), Expect = 2e-11 Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 11/149 (7%) Frame = +2 Query: 29 SLNSSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEA-- 202 S++ +P RR+L GR LR +R P F G+ + AE Sbjct: 568 SVHPEAYPVVRRILEATGRDIRALIGDTDTLRSLR-PDDFVDERF-GLPTVTDILAELEK 625 Query: 203 ------PAAEQAAKAIKLEDVKE---GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 355 P + AA +ED+ + G EG VT V FGAFV+ G + +GLVH+S ++ Sbjct: 626 PGRDPRPEFQTAAFRDGVEDITDLEPGMVLEGVVTNVAAFGAFVDVGVHHDGLVHVSAMS 685 Query: 356 SGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 F K+ +DVV+PG V VKVL VD +K Sbjct: 686 KSFVKDPRDVVKPGDIVRVKVLDVDVRRK 714 [124][TOP] >UniRef100_C1EUA0 S1 RNA binding domain protein n=1 Tax=Bacillus cereus 03BB102 RepID=C1EUA0_BACC3 Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [125][TOP] >UniRef100_B9MA81 Resolvase RNase H domain protein n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MA81_DIAST Length = 798 Score = 72.0 bits (175), Expect = 2e-11 Identities = 34/69 (49%), Positives = 50/69 (72%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 + D++EG EGTV+ V +FGAFV+ G + +GLVH+S+L+ F +A++VV+ G V VK Sbjct: 673 IADLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 732 Query: 416 VLSVDAEKK 442 VL VDA +K Sbjct: 733 VLEVDAARK 741 [126][TOP] >UniRef100_B8IV07 RNA binding S1 domain protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IV07_METNO Length = 769 Score = 72.0 bits (175), Expect = 2e-11 Identities = 41/90 (45%), Positives = 52/90 (57%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RPS R E A D+K G EG VT V FGAFV+ G + +GLVHIS L Sbjct: 630 RPSFRTATFREGVETIA------DLKPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHISAL 683 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 ++ F K+ ++VV+PG V VKVL VD +K Sbjct: 684 SNSFVKDPRNVVKPGDVVKVKVLDVDVPRK 713 [127][TOP] >UniRef100_B3E6B1 RNA binding S1 domain protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E6B1_GEOLS Length = 762 Score = 72.0 bits (175), Expect = 2e-11 Identities = 35/70 (50%), Positives = 48/70 (68%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D++EG +G VT V FGAFV+ G + +GLVH+S LA+ F K+ D VQ GQ V V Sbjct: 642 EISDLQEGMILQGVVTNVTAFGAFVDIGVHQDGLVHVSHLANRFIKDPNDAVQVGQVVKV 701 Query: 413 KVLSVDAEKK 442 KVLS D ++K Sbjct: 702 KVLSADPQRK 711 [128][TOP] >UniRef100_B2IGR3 RNA binding S1 domain protein n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IGR3_BEII9 Length = 766 Score = 72.0 bits (175), Expect = 2e-11 Identities = 50/129 (38%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Frame = +2 Query: 62 RMLREL-GRTATVKAHGRSVLRPVR-GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIK 235 R LR L G TAT+K+ + R G R + +P E A A Sbjct: 585 RDLRSLMGDTATLKSLNPAQFVDERFGLPTVRDILLELEKPGRDPRPEFKTATFAEGIDD 644 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 ++D+K G EGTVT V FGAFV+ G + +GLVHIS+LA F K D+V+ G V V+ Sbjct: 645 IKDLKPGMTLEGTVTNVTNFGAFVDIGVHQDGLVHISQLADRFVKEPNDLVKAGDVVKVR 704 Query: 416 VLSVDAEKK 442 V+ VD ++K Sbjct: 705 VVEVDVKRK 713 [129][TOP] >UniRef100_A5G3R7 RNA binding S1 domain protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G3R7_GEOUR Length = 757 Score = 72.0 bits (175), Expect = 2e-11 Identities = 36/70 (51%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 +L D++EG +GTVT V FGAFV+ G + +GLVH+S LA F K+ + V+ GQ V V Sbjct: 642 ELGDLQEGMILQGTVTNVTAFGAFVDIGVHQDGLVHVSHLAQRFVKDPNEAVKVGQIVKV 701 Query: 413 KVLSVDAEKK 442 KVLSVD ++K Sbjct: 702 KVLSVDLQRK 711 [130][TOP] >UniRef100_A0JTC3 RNA binding S1 domain protein n=1 Tax=Arthrobacter sp. FB24 RepID=A0JTC3_ARTS2 Length = 861 Score = 72.0 bits (175), Expect = 2e-11 Identities = 35/70 (50%), Positives = 48/70 (68%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D++ G EGTVT V FGAFV+ G + +GLVH+S LA+ F + ++VV+ GQ V V Sbjct: 685 KISDLRPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSGQVVRV 744 Query: 413 KVLSVDAEKK 442 KVL D E+K Sbjct: 745 KVLEADPERK 754 [131][TOP] >UniRef100_Q6SGM3 S1 RNA binding domain protein n=1 Tax=uncultured marine bacterium 463 RepID=Q6SGM3_9BACT Length = 772 Score = 72.0 bits (175), Expect = 2e-11 Identities = 35/70 (50%), Positives = 47/70 (67%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D++ EGTVT V FGAF++ G + +GLVHIS LA F K+ +DVV+ G V V Sbjct: 644 KISDLRPDMVLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRV 703 Query: 413 KVLSVDAEKK 442 KV+ VDA +K Sbjct: 704 KVMEVDAPRK 713 [132][TOP] >UniRef100_Q4MPT2 S1 RNA binding domain protein n=1 Tax=Bacillus cereus G9241 RepID=Q4MPT2_BACCE Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [133][TOP] >UniRef100_C6QU16 RNA binding S1 domain protein n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QU16_9BACI Length = 728 Score = 72.0 bits (175), Expect = 2e-11 Identities = 40/90 (44%), Positives = 53/90 (58%) Frame = +2 Query: 170 VRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISK 349 VRP E P +K+ED+K+G E EGTV V +FGAFV+ G +GLVHISK Sbjct: 620 VRPERDPRDELPKPLLRKDILKMEDLKKGMELEGTVRNVVDFGAFVDIGVKQDGLVHISK 679 Query: 350 LASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 L+ + ++ DVV G V V V +VD +K Sbjct: 680 LSKQYVRHPLDVVSVGDVVKVWVDNVDVDK 709 [134][TOP] >UniRef100_C5R7Z4 S1 domain RNA-binding protein n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R7Z4_WEIPA Length = 727 Score = 72.0 bits (175), Expect = 2e-11 Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Frame = +2 Query: 35 NSSIFPSSRRMLRELGRTATVK---AHGRSVLRPVRGPAGRRQVAF----------TGVR 175 N+ I P S ++ ++ R+A V+ A R L P +Q+ + + Sbjct: 569 NTDIHPESYQVAEKVLRSAAVEKLGADARHALHEFDTPVFAQQLGIGYPTLHDIISSLIE 628 Query: 176 PSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 355 P + +AP A + + L+D+K G + +GTV V +FGAFV+ G + +GLVHISKL+ Sbjct: 629 PGRDLRDDAPMATLRSDVLTLDDLKVGMQLQGTVRNVVDFGAFVDIGVHEDGLVHISKLS 688 Query: 356 SGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 KN +V G VTV V +D +++ Sbjct: 689 KQHIKNPHAIVAVGDIVTVWVTEIDKKRQ 717 [135][TOP] >UniRef100_C3FXH2 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus thuringiensis serovar andalousiensis BGSC 4AW1 RepID=C3FXH2_BACTU Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [136][TOP] >UniRef100_C3BWR5 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus thuringiensis serovar tochigiensis BGSC 4Y1 RepID=C3BWR5_BACTU Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [137][TOP] >UniRef100_C2VN38 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus Rock3-42 RepID=C2VN38_BACCE Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [138][TOP] >UniRef100_C2UPY9 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus Rock3-28 RepID=C2UPY9_BACCE Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED++ G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLQRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [139][TOP] >UniRef100_C2TRT2 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=3 Tax=Bacillus cereus RepID=C2TRT2_BACCE Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED++ G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLQRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [140][TOP] >UniRef100_C2QME8 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus ATCC 4342 RepID=C2QME8_BACCE Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [141][TOP] >UniRef100_C2Q6H0 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus R309803 RepID=C2Q6H0_BACCE Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 36/70 (51%), Positives = 48/70 (68%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL++ + K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSTQYVKHPLDIVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [142][TOP] >UniRef100_C2MF83 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus m1293 RepID=C2MF83_BACCE Length = 722 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [143][TOP] >UniRef100_C1XJG4 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJG4_MEIRU Length = 714 Score = 72.0 bits (175), Expect = 2e-11 Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 12/148 (8%) Frame = +2 Query: 29 SLNSSIFPSSRRMLR-ELGRTATVKAHGRSVLRPVRGPAGR--RQVAFTGVR------PS 181 SL P+ R ++ + R T+K + + + GP G+ RQ+ GV + Sbjct: 545 SLMERAVPTHRAEMKPHVPRILTLKVNPDKI-GGIIGPGGKNIRQLEELGVEIDIEQDGT 603 Query: 182 VRVFAEAPAAEQAAKAIKL---EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 +R+++ + AA + AKA L + K G YEGTVT + FGAF+ +GL+HIS+L Sbjct: 604 IRLYSASAAAAEEAKARILGQTAEAKVGEIYEGTVTRITNFGAFIEILPGKDGLLHISQL 663 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAE 436 A G + +DV+ GQK+ VKV S+D + Sbjct: 664 AQGRVQKVEDVLSLGQKIKVKVNSIDEQ 691 [144][TOP] >UniRef100_B7RVW5 S1 RNA binding domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RVW5_9GAMM Length = 772 Score = 72.0 bits (175), Expect = 2e-11 Identities = 35/70 (50%), Positives = 47/70 (67%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D++ EGTVT V FGAF++ G + +GLVHIS LA F K+ +DVV+ G V V Sbjct: 644 KISDLRPDMVLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRV 703 Query: 413 KVLSVDAEKK 442 KV+ VDA +K Sbjct: 704 KVMEVDAPRK 713 [145][TOP] >UniRef100_B7DS68 Polyribonucleotide nucleotidyltransferase n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DS68_9BACL Length = 735 Score = 72.0 bits (175), Expect = 2e-11 Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 12/128 (9%) Frame = +2 Query: 83 RTATVKAHGRSVLRPVRGPAGR---RQVAFTGVRPSV----RVFAEAPAAEQAAKAIKL- 238 R TVK H + R V GP GR + + TGV+ + RV+ + AEQA +A ++ Sbjct: 550 RVITVKIHPDKI-RDVIGPGGRVINKIIEETGVKIDIEQDGRVYIHSTDAEQANRAREMV 608 Query: 239 ----EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKV 406 DV+ G+ Y G VT VE++GAFV GLVHIS+L +DV Q G + Sbjct: 609 ENIVRDVEVGATYTGKVTRVEKYGAFVEILPGKEGLVHISQLDLNRVAKVEDVCQVGDTL 668 Query: 407 TVKVLSVD 430 TVKV +D Sbjct: 669 TVKVTEID 676 [146][TOP] >UniRef100_B7HRZ4 S1 RNA binding domain protein n=4 Tax=Bacillus cereus RepID=B7HRZ4_BACC7 Length = 724 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 644 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 703 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 704 VWVDDIDTKK 713 [147][TOP] >UniRef100_B4X3W4 S1 RNA binding domain protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X3W4_9GAMM Length = 791 Score = 72.0 bits (175), Expect = 2e-11 Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 5/85 (5%) Frame = +2 Query: 203 PAAEQAAKAIK-----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFT 367 P E A A+K L+D+K+ EGTVT V FGAFV+ G + +GLVH+S LA F Sbjct: 628 PRPEFKAAALKEGVETLKDLKQSMILEGTVTNVTNFGAFVDIGVHQDGLVHVSALADKFV 687 Query: 368 KNAKDVVQPGQKVTVKVLSVDAEKK 442 ++ VV PG V VKVL VD ++K Sbjct: 688 EDPHQVVAPGDIVKVKVLDVDLDRK 712 [148][TOP] >UniRef100_A0R8V4 Transcription accessory protein, S1 RNA-binding domain n=19 Tax=Bacillus cereus group RepID=A0R8V4_BACAH Length = 724 Score = 72.0 bits (175), Expect = 2e-11 Identities = 37/70 (52%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 644 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 703 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 704 VWVDDIDTKK 713 [149][TOP] >UniRef100_UPI0001B4D0A3 transcriptional accessory protein n=1 Tax=Streptomyces lividans TK24 RepID=UPI0001B4D0A3 Length = 780 Score = 71.6 bits (174), Expect = 2e-11 Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 12/150 (8%) Frame = +2 Query: 29 SLNSSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAE--- 199 S++ +P RRM++ G+ + SVLR ++ R V T P+V Sbjct: 569 SVHPEAYPVVRRMVKTAGQEVSGLIGNTSVLRSLKPD---RFVDETFGLPTVTDILRELE 625 Query: 200 ------APAAEQAA---KAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 PA + A K+ D+ G EG VT V FGAFV+ G + +GLVH+S + Sbjct: 626 KPGRDPRPAFKTATFKEGVEKISDLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAM 685 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 + F K+ +DVV+PG V VKV+ VD +K Sbjct: 686 SRTFVKDPRDVVKPGDIVKVKVMDVDIPRK 715 [150][TOP] >UniRef100_UPI0001AF29A2 putative transcription accessory protein n=1 Tax=Streptomyces roseosporus NRRL 11379 RepID=UPI0001AF29A2 Length = 771 Score = 71.6 bits (174), Expect = 2e-11 Identities = 35/70 (50%), Positives = 47/70 (67%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 KL D++ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ +DVV+PG V V Sbjct: 646 KLGDLEPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKPGDIVKV 705 Query: 413 KVLSVDAEKK 442 KV+ VD +K Sbjct: 706 KVMDVDVPRK 715 [151][TOP] >UniRef100_Q9X7P9 Putative transcriptional accessory protein n=1 Tax=Streptomyces coelicolor RepID=Q9X7P9_STRCO Length = 780 Score = 71.6 bits (174), Expect = 2e-11 Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 12/150 (8%) Frame = +2 Query: 29 SLNSSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAE--- 199 S++ +P RRM++ G+ + SVLR ++ R V T P+V Sbjct: 569 SVHPEAYPVVRRMVKTAGQEVSGLIGNTSVLRSLKPD---RFVDETFGLPTVTDILRELE 625 Query: 200 ------APAAEQAA---KAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 PA + A K+ D+ G EG VT V FGAFV+ G + +GLVH+S + Sbjct: 626 KPGRDPRPAFKTATFKEGVEKISDLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAM 685 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 + F K+ +DVV+PG V VKV+ VD +K Sbjct: 686 SRTFVKDPRDVVKPGDIVKVKVMDVDIPRK 715 [152][TOP] >UniRef100_Q21CQ2 RNA binding S1 n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21CQ2_RHOPB Length = 782 Score = 71.6 bits (174), Expect = 2e-11 Identities = 35/69 (50%), Positives = 47/69 (68%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 L+D+K G EG VT V FGAFV+ G + +GLVHIS ++ F K+ ++VV+PG V VK Sbjct: 647 LKDLKPGMVLEGAVTNVAAFGAFVDIGVHQDGLVHISAMSRSFIKDPREVVKPGDIVKVK 706 Query: 416 VLSVDAEKK 442 VL VD +K Sbjct: 707 VLEVDVARK 715 [153][TOP] >UniRef100_Q11LK4 RNA binding S1 n=1 Tax=Chelativorans sp. BNC1 RepID=Q11LK4_MESSB Length = 772 Score = 71.6 bits (174), Expect = 2e-11 Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 19/153 (12%) Frame = +2 Query: 38 SSIFPSSRRMLRELGRTATVKAHGRSVLRPVRGPAGRRQV----AFTGVR---PSVR-VF 193 S++ P + + R + V A GR V R + G +G + F R P+VR + Sbjct: 565 SAVHPEAYHLARRI-----VAACGRDV-RSLMGDSGALKALDPRVFADERFGLPTVRDII 618 Query: 194 AEA--------PAAEQAAKAIKLEDVKE---GSEYEGTVTTVEEFGAFVNFGANTNGLVH 340 AE PA A A ++D+K+ G EGTVT V FGAFV+ G + +GLVH Sbjct: 619 AELEKPGRDPRPAFRTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVH 678 Query: 341 ISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 +S+LA+ F K+A +VV+ G V V+VL VD ++ Sbjct: 679 VSQLANRFVKDAHEVVKAGDVVKVRVLEVDIKR 711 [154][TOP] >UniRef100_B9JAJ3 RNA-binding domain S1-containing transcriptional regulator n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JAJ3_AGRRK Length = 769 Score = 71.6 bits (174), Expect = 2e-11 Identities = 34/70 (48%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ ++V+ G V V Sbjct: 643 EISDLKPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEIVKAGDVVKV 702 Query: 413 KVLSVDAEKK 442 KV+ VDA++K Sbjct: 703 KVVDVDAKRK 712 [155][TOP] >UniRef100_B5E861 RNA binding S1 domain protein n=1 Tax=Geobacter bemidjiensis Bem RepID=B5E861_GEOBB Length = 754 Score = 71.6 bits (174), Expect = 2e-11 Identities = 34/71 (47%), Positives = 49/71 (69%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + + D+KEG +G VT V FGAFV+ G + +GLVH+S+L+ FTK+ D V+ G+ V Sbjct: 639 VTIADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKVGEIVK 698 Query: 410 VKVLSVDAEKK 442 VK+LS D E+K Sbjct: 699 VKLLSADPERK 709 [156][TOP] >UniRef100_B1VTW9 Putative transcription accessory protein n=1 Tax=Streptomyces griseus subsp. griseus NBRC 13350 RepID=B1VTW9_STRGG Length = 843 Score = 71.6 bits (174), Expect = 2e-11 Identities = 35/70 (50%), Positives = 47/70 (67%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 KL D++ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ +DVV+PG V V Sbjct: 679 KLGDLEPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKPGDIVKV 738 Query: 413 KVLSVDAEKK 442 KV+ VD +K Sbjct: 739 KVMDVDVPRK 748 [157][TOP] >UniRef100_A1R3T9 Putative transcriptional accessory protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R3T9_ARTAT Length = 818 Score = 71.6 bits (174), Expect = 2e-11 Identities = 34/70 (48%), Positives = 48/70 (68%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D+K G EGTVT V FGAFV+ G + +GLVH+S L++ F + +++V+ GQ V V Sbjct: 652 KISDLKPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALSNKFVSDPREIVKSGQVVRV 711 Query: 413 KVLSVDAEKK 442 KVL D E+K Sbjct: 712 KVLEADPERK 721 [158][TOP] >UniRef100_C9BPK0 RNA binding protein S1 n=7 Tax=Enterococcus faecium RepID=C9BPK0_ENTFC Length = 726 Score = 71.6 bits (174), Expect = 2e-11 Identities = 38/81 (46%), Positives = 48/81 (59%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E PA + +ED+K G E GTV V +FGAFV+ G +GLVHISKL+ F K+ Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G VTV + VD +K Sbjct: 693 TDVVSVGDIVTVWIEQVDTKK 713 [159][TOP] >UniRef100_C9B562 RNA binding protein S1 n=1 Tax=Enterococcus faecium 1,231,501 RepID=C9B562_ENTFC Length = 726 Score = 71.6 bits (174), Expect = 2e-11 Identities = 38/81 (46%), Positives = 48/81 (59%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E PA + +ED+K G E GTV V +FGAFV+ G +GLVHISKL+ F K+ Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G VTV + VD +K Sbjct: 693 TDVVSVGDIVTVWIEQVDTKK 713 [160][TOP] >UniRef100_C4WBM3 Protein YhgF n=1 Tax=Staphylococcus warneri L37603 RepID=C4WBM3_STAWA Length = 716 Score = 71.6 bits (174), Expect = 2e-11 Identities = 33/70 (47%), Positives = 46/70 (65%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+ EG + GTV V +FGAFV+ G +GLVH+SKL+ F KN D+V G V Sbjct: 635 LSIEDLSEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694 Query: 410 VKVLSVDAEK 439 V +LS+D +K Sbjct: 695 VWILSIDTQK 704 [161][TOP] >UniRef100_C3HCT7 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus thuringiensis serovar pulsiensis BGSC 4CC1 RepID=C3HCT7_BACTU Length = 722 Score = 71.6 bits (174), Expect = 2e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAF++ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFIDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [162][TOP] >UniRef100_C2YL46 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus AH1271 RepID=C2YL46_BACCE Length = 656 Score = 71.6 bits (174), Expect = 2e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ D+V GQ V Sbjct: 576 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDIVSVGQIVK 635 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 636 VWVDDIDTKK 645 [163][TOP] >UniRef100_C2P9F5 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus MM3 RepID=C2P9F5_BACCE Length = 722 Score = 71.6 bits (174), Expect = 2e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDIVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [164][TOP] >UniRef100_C2HBI6 S1 domain RNA-binding protein n=2 Tax=Enterococcus faecium RepID=C2HBI6_ENTFC Length = 726 Score = 71.6 bits (174), Expect = 2e-11 Identities = 38/81 (46%), Positives = 48/81 (59%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E PA + +ED+K G E GTV V +FGAFV+ G +GLVHISKL+ F K+ Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G VTV + VD +K Sbjct: 693 TDVVSVGDIVTVWIEQVDTKK 713 [165][TOP] >UniRef100_C1V3S8 Transcriptional accessory protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=C1V3S8_9DELT Length = 801 Score = 71.6 bits (174), Expect = 2e-11 Identities = 34/69 (49%), Positives = 49/69 (71%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 LED+K + EG VT V +FGAFV+ G + +GLVHIS+L+ F K+ ++VV+ G K+ V+ Sbjct: 648 LEDLKPEMQLEGVVTNVTDFGAFVDVGVHQDGLVHISQLSDRFVKDPREVVKVGDKIKVR 707 Query: 416 VLSVDAEKK 442 VL VD +K Sbjct: 708 VLDVDLARK 716 [166][TOP] >UniRef100_B6G8Z0 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G8Z0_9ACTN Length = 835 Score = 71.6 bits (174), Expect = 2e-11 Identities = 38/82 (46%), Positives = 51/82 (62%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 +AP + A +ED++ G E +GTV V +FGAFV+ G + +GLVHISKLA F K+ Sbjct: 741 DAPEVVFSQAARSIEDLEVGMELKGTVRNVVDFGAFVDIGVHQDGLVHISKLADRFVKHP 800 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 +VV G VTV V VD +K Sbjct: 801 SEVVAVGDTVTVWVTGVDRTRK 822 [167][TOP] >UniRef100_A4TUT2 Transcriptional accessory protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TUT2_9PROT Length = 779 Score = 71.6 bits (174), Expect = 2e-11 Identities = 34/69 (49%), Positives = 48/69 (69%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 ++D++ G EG VT V FGAFV+ G + +GLVH+S LA F K+ +VV+PG V+VK Sbjct: 651 MQDLQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKPGDVVSVK 710 Query: 416 VLSVDAEKK 442 VL VD ++K Sbjct: 711 VLEVDLKRK 719 [168][TOP] >UniRef100_B0THS2 Polyribonucleotide nucleotidyltransferase n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=PNP_HELMI Length = 709 Score = 71.6 bits (174), Expect = 2e-11 Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 12/118 (10%) Frame = +2 Query: 119 LRPVRGPAGR---RQVAFTGVRPSV----RVFAEAPAAEQAAKAIKL-----EDVKEGSE 262 +R V GP G+ + +A TGV+ + R+F A E A KA+++ DV+ G Sbjct: 561 IREVIGPGGKVINKIIAETGVKIDIEDDGRIFIAATDTEAANKAVRIIESITADVEVGKV 620 Query: 263 YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 436 Y G VT + FGAFV GL+HIS+LA +DVV+ G +VTVKV+ +D + Sbjct: 621 YTGKVTRIMNFGAFVEVLPGKEGLIHISQLAEERVAKVEDVVKIGDEVTVKVVEIDKQ 678 [169][TOP] >UniRef100_UPI0001BB068E Tex-like protein protein-like protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=UPI0001BB068E Length = 815 Score = 71.2 bits (173), Expect = 3e-11 Identities = 37/82 (45%), Positives = 52/82 (63%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E A AA K+ D++ G EG VT V FGAFV+ G + +GLVH+S +A+ F + Sbjct: 628 EFKTATFAAGIEKVSDLRPGMILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANRFVSDP 687 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 ++VV+ G VTVKV+ VD E+K Sbjct: 688 REVVKSGDIVTVKVMEVDVERK 709 [170][TOP] >UniRef100_UPI0001B53EE5 transcription accessory protein n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B53EE5 Length = 1218 Score = 71.2 bits (173), Expect = 3e-11 Identities = 35/70 (50%), Positives = 47/70 (67%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 KL D++ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ ++VV+PG V V Sbjct: 626 KLSDLEPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKPGDIVKV 685 Query: 413 KVLSVDAEKK 442 KVL VD +K Sbjct: 686 KVLDVDLPRK 695 [171][TOP] >UniRef100_UPI0001AF4EAF transcriptional accessory protein Tex n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4EAF Length = 753 Score = 71.2 bits (173), Expect = 3e-11 Identities = 36/75 (48%), Positives = 48/75 (64%) Frame = +2 Query: 218 AAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPG 397 AA K+ D+K G EG VT V FGAFV+ G + +GLVH+S +A F + DVV+ G Sbjct: 625 AAGVQKIADLKVGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMAERFVADPHDVVRSG 684 Query: 398 QKVTVKVLSVDAEKK 442 Q V VKV+ VD E++ Sbjct: 685 QVVRVKVIDVDVERR 699 [172][TOP] >UniRef100_UPI00019083B0 probable transcriptional accessory protein (RNA binding S1 domain) n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI00019083B0 Length = 195 Score = 71.2 bits (173), Expect = 3e-11 Identities = 34/70 (48%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 103 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 162 Query: 413 KVLSVDAEKK 442 +V+ VDA++K Sbjct: 163 RVVEVDAKRK 172 [173][TOP] >UniRef100_UPI0001906521 RNA binding S1 domain protein n=1 Tax=Rhizobium etli Kim 5 RepID=UPI0001906521 Length = 717 Score = 71.2 bits (173), Expect = 3e-11 Identities = 34/70 (48%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 643 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702 Query: 413 KVLSVDAEKK 442 +V+ VDA++K Sbjct: 703 RVVEVDAKRK 712 [174][TOP] >UniRef100_UPI0001905DA4 probable transcriptional accessory protein (RNA binding S1 domain) n=1 Tax=Rhizobium etli GR56 RepID=UPI0001905DA4 Length = 256 Score = 71.2 bits (173), Expect = 3e-11 Identities = 34/70 (48%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 130 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 189 Query: 413 KVLSVDAEKK 442 +V+ VDA++K Sbjct: 190 RVVEVDAKRK 199 [175][TOP] >UniRef100_UPI00019042F2 probable transcriptional accessory protein (RNA binding S1 domain) n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019042F2 Length = 187 Score = 71.2 bits (173), Expect = 3e-11 Identities = 34/70 (48%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 61 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 120 Query: 413 KVLSVDAEKK 442 +V+ VDA++K Sbjct: 121 RVVEVDAKRK 130 [176][TOP] >UniRef100_UPI000185BF30 transcriptional accessory protein n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BF30 Length = 763 Score = 71.2 bits (173), Expect = 3e-11 Identities = 34/69 (49%), Positives = 47/69 (68%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D++ G EGTVT V FGAFV+ G + +GLVH+S +A GF + +VV+ G+ V V Sbjct: 641 KISDLQPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSNMARGFVSDPHEVVRSGEVVKV 700 Query: 413 KVLSVDAEK 439 KVL VD E+ Sbjct: 701 KVLDVDVER 709 [177][TOP] >UniRef100_Q4L7U8 Similar to transcription accessory protein n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L7U8_STAHJ Length = 715 Score = 71.2 bits (173), Expect = 3e-11 Identities = 34/70 (48%), Positives = 45/70 (64%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+KEG + GTV V +FGAFV+ G +GLVH+SKL+ F KN DVV G V Sbjct: 634 LSIEDLKEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDVVSVGDIVE 693 Query: 410 VKVLSVDAEK 439 V +L +D K Sbjct: 694 VWILDIDKNK 703 [178][TOP] >UniRef100_Q2JGI6 RNA binding S1 n=1 Tax=Frankia sp. CcI3 RepID=Q2JGI6_FRASC Length = 864 Score = 71.2 bits (173), Expect = 3e-11 Identities = 39/90 (43%), Positives = 52/90 (57%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RP+ R A E A D+ G EGTVT V FGAFV+ G + +GLVH+S + Sbjct: 641 RPAFRTAAFTEGIETLA------DLVPGMTLEGTVTNVAAFGAFVDIGVHQDGLVHVSAM 694 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 + F + ++VV+PG VTVKVL VD +K Sbjct: 695 SKNFVSDPREVVKPGDIVTVKVLDVDIPRK 724 [179][TOP] >UniRef100_Q1MKQ5 Putative RNA-binding domain transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MKQ5_RHIL3 Length = 769 Score = 71.2 bits (173), Expect = 3e-11 Identities = 34/70 (48%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 643 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702 Query: 413 KVLSVDAEKK 442 +V+ VDA++K Sbjct: 703 RVVEVDAKRK 712 [180][TOP] >UniRef100_Q07UL0 RNA binding S1 domain protein n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07UL0_RHOP5 Length = 784 Score = 71.2 bits (173), Expect = 3e-11 Identities = 38/79 (48%), Positives = 50/79 (63%) Frame = +2 Query: 206 AAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDV 385 AAE L+D+K G EG VT V FGAFV+ G + +GLVHIS ++ F K+ ++V Sbjct: 639 AAEFKEGVETLKDLKVGMILEGAVTNVAAFGAFVDIGVHQDGLVHISAMSKTFIKDPREV 698 Query: 386 VQPGQKVTVKVLSVDAEKK 442 V+PG V VKVL VD +K Sbjct: 699 VKPGDIVKVKVLEVDVARK 717 [181][TOP] >UniRef100_C6B3G7 RNA binding S1 domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B3G7_RHILS Length = 769 Score = 71.2 bits (173), Expect = 3e-11 Identities = 34/70 (48%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 643 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702 Query: 413 KVLSVDAEKK 442 +V+ VDA++K Sbjct: 703 RVVEVDAKRK 712 [182][TOP] >UniRef100_B3PRI3 Probable transcriptional accessory protein (RNA binding S1 domain) n=1 Tax=Rhizobium etli CIAT 652 RepID=B3PRI3_RHIE6 Length = 769 Score = 71.2 bits (173), Expect = 3e-11 Identities = 34/70 (48%), Positives = 49/70 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 643 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702 Query: 413 KVLSVDAEKK 442 +V+ VDA++K Sbjct: 703 RVVEVDAKRK 712 [183][TOP] >UniRef100_C2W368 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus Rock3-44 RepID=C2W368_BACCE Length = 722 Score = 71.2 bits (173), Expect = 3e-11 Identities = 38/70 (54%), Positives = 46/70 (65%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRAMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 702 VWVDDVDMKK 711 [184][TOP] >UniRef100_C0UKG5 Transcriptional accessory protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=C0UKG5_9ACTO Length = 852 Score = 71.2 bits (173), Expect = 3e-11 Identities = 37/82 (45%), Positives = 52/82 (63%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E A AA K+ D++ G EG VT V FGAFV+ G + +GLVH+S +A+ F + Sbjct: 665 EFKTATFAAGIEKVSDLRPGMILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANRFVSDP 724 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 ++VV+ G VTVKV+ VD E+K Sbjct: 725 REVVKSGDIVTVKVMEVDVERK 746 [185][TOP] >UniRef100_UPI0001BB916D conserved hypothetical protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=UPI0001BB916D Length = 788 Score = 70.9 bits (172), Expect = 4e-11 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 640 EVAQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVADPHKVVKPGQIVQV 699 Query: 413 KVLSVDAEK 439 +VL+VDAE+ Sbjct: 700 RVLTVDAER 708 [186][TOP] >UniRef100_UPI00003847A9 COG2183: Transcriptional accessory protein n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003847A9 Length = 784 Score = 70.9 bits (172), Expect = 4e-11 Identities = 36/69 (52%), Positives = 46/69 (66%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 L D+K G EG VT V FGAFV+ G + +GLVHIS LA F K+ +VV+PG V VK Sbjct: 659 LNDLKPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVK 718 Query: 416 VLSVDAEKK 442 VL VD +++ Sbjct: 719 VLEVDLKRQ 727 [187][TOP] >UniRef100_Q82MJ1 Putative transcription accessory protein n=1 Tax=Streptomyces avermitilis RepID=Q82MJ1_STRAW Length = 810 Score = 70.9 bits (172), Expect = 4e-11 Identities = 33/70 (47%), Positives = 46/70 (65%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V Sbjct: 648 KISDLASGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKV 707 Query: 413 KVLSVDAEKK 442 KVL +D +K Sbjct: 708 KVLDIDIPRK 717 [188][TOP] >UniRef100_C5D4D6 RNA binding S1 domain protein n=1 Tax=Geobacillus sp. WCH70 RepID=C5D4D6_GEOSW Length = 728 Score = 70.9 bits (172), Expect = 4e-11 Identities = 39/90 (43%), Positives = 52/90 (57%) Frame = +2 Query: 170 VRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISK 349 +RP E P +K+ED+K G E EGTV V +FGAFV+ G +GLVHISK Sbjct: 620 IRPERDPRDELPKPLLRKDILKMEDLKRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISK 679 Query: 350 LASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 L+ + ++ DVV G V V V +VD +K Sbjct: 680 LSKQYVRHPLDVVSVGDVVKVWVDNVDLDK 709 [189][TOP] >UniRef100_B4SMQ1 RNA binding S1 domain protein n=1 Tax=Stenotrophomonas maltophilia R551-3 RepID=B4SMQ1_STRM5 Length = 795 Score = 70.9 bits (172), Expect = 4e-11 Identities = 37/82 (45%), Positives = 51/82 (62%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E AA A ++D++EG EG V+ V FGAFV+ G + +GL+HIS L+ F K+ Sbjct: 641 EFKAARFAEGVEDIKDLREGMVLEGVVSNVAAFGAFVDIGVHQDGLIHISALSDTFVKDP 700 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 +DVV+ G V VKVL VD +K Sbjct: 701 RDVVKAGDIVKVKVLEVDVARK 722 [190][TOP] >UniRef100_B2FJD5 Putative transcription accessory protein n=1 Tax=Stenotrophomonas maltophilia K279a RepID=B2FJD5_STRMK Length = 795 Score = 70.9 bits (172), Expect = 4e-11 Identities = 37/82 (45%), Positives = 51/82 (62%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E AA A ++D++EG EG V+ V FGAFV+ G + +GL+HIS L+ F K+ Sbjct: 641 EFKAARFAEGVEDIKDLREGMVLEGVVSNVAAFGAFVDIGVHQDGLIHISALSDTFVKDP 700 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 +DVV+ G V VKVL VD +K Sbjct: 701 RDVVKAGDIVKVKVLEVDVARK 722 [191][TOP] >UniRef100_A8MJM7 RNA binding S1 domain protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJM7_ALKOO Length = 718 Score = 70.9 bits (172), Expect = 4e-11 Identities = 35/81 (43%), Positives = 51/81 (62%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P + +K+ED+K GTV V +FGAFV+ G +GLVH+S+L++ F KNA Sbjct: 627 EMPKPLFKSDVLKMEDLKLDMIMPGTVRNVVDFGAFVDIGVKQDGLVHVSELSNRFVKNA 686 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G +V VK++ +D E+ Sbjct: 687 MDVVSVGDEVKVKIIGLDIER 707 [192][TOP] >UniRef100_A7NJ51 RNA binding S1 domain protein n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NJ51_ROSCS Length = 503 Score = 70.9 bits (172), Expect = 4e-11 Identities = 36/68 (52%), Positives = 45/68 (66%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 KL ++ G EGTVT + FG FV+ G +GLVH+S+LA G + A+DVVQ GQ T Sbjct: 231 KLAALRVGDNVEGTVTGLAPFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTF 290 Query: 413 KVLSVDAE 436 KVL VDAE Sbjct: 291 KVLEVDAE 298 Score = 64.7 bits (156), Expect = 3e-09 Identities = 31/76 (40%), Positives = 49/76 (64%) Frame = +2 Query: 215 QAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQP 394 +A + KL+ +++G EGT++ + FGAFV+ G +GLVHIS+L++ +D V+ Sbjct: 308 RAQRGQKLQQLEKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNARVARVEDAVKV 367 Query: 395 GQKVTVKVLSVDAEKK 442 G KV V+VL VD + K Sbjct: 368 GDKVQVRVLDVDPQSK 383 Score = 60.5 bits (145), Expect = 6e-08 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Frame = +2 Query: 137 PAGRRQVAFTGVRPSVRVFA---EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFV 307 P G +VA P+ A +APA + +++D+ G E EG VT++ +G FV Sbjct: 97 PTGSAEVAPEAAAPAGTAEAASYQAPAEAPTGRPRRVKDLAPGMELEGRVTSIALYGIFV 156 Query: 308 NFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 436 + G +GLVHIS+++ ++ D+V+ G V V+V SV+ + Sbjct: 157 DIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPD 199 [193][TOP] >UniRef100_A1WZ97 RNA binding S1 domain protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZ97_HALHL Length = 798 Score = 70.9 bits (172), Expect = 4e-11 Identities = 39/90 (43%), Positives = 53/90 (58%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RP R A E K++D++ G EGTVT V FGAFV+ G + +GLVHIS L Sbjct: 642 RPEFRTAAFREGVE------KIQDLEPGMVLEGTVTNVANFGAFVDIGVHQDGLVHISAL 695 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F ++ +D V+ G V VKV+ VD E++ Sbjct: 696 AHEFVRDPRDKVRTGDVVQVKVMEVDLERQ 725 [194][TOP] >UniRef100_A1TSP0 RNA binding S1 domain protein n=1 Tax=Acidovorax citrulli AAC00-1 RepID=A1TSP0_ACIAC Length = 788 Score = 70.9 bits (172), Expect = 4e-11 Identities = 33/69 (47%), Positives = 50/69 (72%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 + D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+L+ F ++A+++V+ G V VK Sbjct: 658 IADLKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDIVKVK 717 Query: 416 VLSVDAEKK 442 VL VD +K Sbjct: 718 VLEVDPVRK 726 [195][TOP] >UniRef100_A5IUK9 RNA binding S1 domain protein n=13 Tax=Staphylococcus aureus RepID=A5IUK9_STAA9 Length = 716 Score = 70.9 bits (172), Expect = 4e-11 Identities = 34/70 (48%), Positives = 45/70 (64%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+KEG + GTV V +FGAFV+ G +GLVH+SKL+ F KN D+V G V Sbjct: 635 LSIEDLKEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694 Query: 410 VKVLSVDAEK 439 V V S+D K Sbjct: 695 VWVYSIDKNK 704 [196][TOP] >UniRef100_C0AEY5 RNA binding S1 domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEY5_9BACT Length = 788 Score = 70.9 bits (172), Expect = 4e-11 Identities = 34/66 (51%), Positives = 46/66 (69%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K ED+K G + G VT V FGAFV+ G + +GLVH+S+L+ F K+A +VV+PGQKV Sbjct: 679 KPEDLKPGMKLPGIVTNVTAFGAFVDVGVHQDGLVHVSQLSDTFVKDASEVVKPGQKVRA 738 Query: 413 KVLSVD 430 V+ VD Sbjct: 739 TVIEVD 744 [197][TOP] >UniRef100_Q2J2J4 Polyribonucleotide nucleotidyltransferase n=1 Tax=Rhodopseudomonas palustris HaA2 RepID=PNP_RHOP2 Length = 718 Score = 70.9 bits (172), Expect = 4e-11 Identities = 48/120 (40%), Positives = 60/120 (50%), Gaps = 12/120 (10%) Frame = +2 Query: 119 LRPVRGPAG---RRQVAFTGVRPSVRVFAEAPAAEQAAKAIKL---------EDVKEGSE 262 +R V G G R V TG + ++ A ++IK D + G Sbjct: 566 IREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVASSDGESIKAAIKWIKSIASDPEVGEI 625 Query: 263 YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 YEGTV V EFGAFVNF +GLVHIS+LASG + DVV+ G KV VK+L D K Sbjct: 626 YEGTVVKVMEFGAFVNFFGAKDGLVHISQLASGRVQKTSDVVKEGDKVKVKLLGFDDRGK 685 [198][TOP] >UniRef100_C6RQH0 Transcriptional accessory protein n=2 Tax=Acinetobacter radioresistens RepID=C6RQH0_ACIRA Length = 785 Score = 70.5 bits (171), Expect = 6e-11 Identities = 33/68 (48%), Positives = 48/68 (70%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + +V+PGQ V V+ Sbjct: 636 VKQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKIVKPGQIVQVR 695 Query: 416 VLSVDAEK 439 V+ VDAE+ Sbjct: 696 VIQVDAER 703 [199][TOP] >UniRef100_UPI0001B4A059 RNA-binding protein n=1 Tax=Bacteroides sp. 2_1_7 RepID=UPI0001B4A059 Length = 708 Score = 70.5 bits (171), Expect = 6e-11 Identities = 40/90 (44%), Positives = 51/90 (56%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 R +++VFA P + +ED+KEG G VT + FG FV+ G NGLVHIS+L Sbjct: 616 RQTIQVFAFDPTVKT------IEDLKEGQVLPGIVTNITNFGCFVDVGIKENGLVHISEL 669 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F + VV Q V VKVLSVD +K Sbjct: 670 ADRFVSDPTQVVSIHQHVKVKVLSVDLSRK 699 [200][TOP] >UniRef100_Q98HG3 Mll2881 protein n=1 Tax=Mesorhizobium loti RepID=Q98HG3_RHILO Length = 774 Score = 70.5 bits (171), Expect = 6e-11 Identities = 34/69 (49%), Positives = 49/69 (71%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 ++D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+A +VV+ G V V+ Sbjct: 647 IKDLKPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFIKDAHEVVKAGDVVKVR 706 Query: 416 VLSVDAEKK 442 V+ VD ++K Sbjct: 707 VVDVDIKRK 715 [201][TOP] >UniRef100_Q2W1Q4 TEX protein n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W1Q4_MAGSA Length = 787 Score = 70.5 bits (171), Expect = 6e-11 Identities = 36/68 (52%), Positives = 45/68 (66%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 L D+K G EG VT V FGAFV+ G + +GLVHIS LA F K+ +VV+PG V VK Sbjct: 659 LNDLKPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVK 718 Query: 416 VLSVDAEK 439 VL VD ++ Sbjct: 719 VLEVDIKR 726 [202][TOP] >UniRef100_C3PAU1 S1 RNA binding domain protein n=2 Tax=Bacillus anthracis RepID=C3PAU1_BACAA Length = 722 Score = 70.5 bits (171), Expect = 6e-11 Identities = 36/70 (51%), Positives = 46/70 (65%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +KLED+K G E EGT V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTARNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 702 VWVDDIDTKK 711 [203][TOP] >UniRef100_C1B2S2 Transcriptional accessory protein n=1 Tax=Rhodococcus opacus B4 RepID=C1B2S2_RHOOB Length = 807 Score = 70.5 bits (171), Expect = 6e-11 Identities = 37/82 (45%), Positives = 50/82 (60%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E A AA K+ +K G EG VT V FGAFV+ G + +GLVH+S ++ F K+ Sbjct: 621 EFKTATFAAGIEKVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDP 680 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 +DVV+ G VTVKVL VD ++ Sbjct: 681 RDVVKSGDVVTVKVLEVDEARQ 702 [204][TOP] >UniRef100_A6TLF6 RNA binding S1 domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TLF6_ALKMQ Length = 728 Score = 70.5 bits (171), Expect = 6e-11 Identities = 34/81 (41%), Positives = 50/81 (61%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P + +K+ED+K GTV V +FGAFV+ G +GLVH+S+L++ F KN Sbjct: 637 EMPMPIFRSDVLKMEDLKLDMVMTGTVRNVVDFGAFVDIGVKQDGLVHVSQLSNKFVKNP 696 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G +V VK++ +D E+ Sbjct: 697 MDVVSVGDEVEVKIIGIDVER 717 [205][TOP] >UniRef100_Q1ZC98 Putative uncharacterized protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZC98_9GAMM Length = 723 Score = 70.5 bits (171), Expect = 6e-11 Identities = 33/70 (47%), Positives = 50/70 (71%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D+ E +G +T V FGAFV+ G + +GL+H+S+LA+ F K+ +VV+ GQ V V Sbjct: 641 KISDLYTDMEIQGVITNVTSFGAFVDIGVHQDGLIHLSQLANKFVKDPFEVVKTGQIVQV 700 Query: 413 KVLSVDAEKK 442 +VLSVD+E+K Sbjct: 701 RVLSVDSERK 710 [206][TOP] >UniRef100_D0CP90 Protein YhgF n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CP90_9RHOB Length = 810 Score = 70.5 bits (171), Expect = 6e-11 Identities = 34/70 (48%), Positives = 48/70 (68%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ GQ V V Sbjct: 681 EITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSELADRFVKDPHEVVKAGQVVRV 740 Query: 413 KVLSVDAEKK 442 +V+ VD +K Sbjct: 741 RVVEVDVPRK 750 [207][TOP] >UniRef100_D0C0W2 Transcriptional accessory protein n=1 Tax=Acinetobacter sp. RUH2624 RepID=D0C0W2_9GAMM Length = 795 Score = 70.5 bits (171), Expect = 6e-11 Identities = 34/69 (49%), Positives = 48/69 (69%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 647 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706 Query: 413 KVLSVDAEK 439 +V+ VDAE+ Sbjct: 707 RVMQVDAER 715 [208][TOP] >UniRef100_C8ZYG0 RNA binding protein S1 n=1 Tax=Enterococcus gallinarum EG2 RepID=C8ZYG0_ENTGA Length = 727 Score = 70.5 bits (171), Expect = 6e-11 Identities = 37/81 (45%), Positives = 48/81 (59%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E PA + +ED++ G E GTV V +FGAFV+ G +GLVH+SKL+ F K+ Sbjct: 633 EMPAPLLRKDVLSMEDLRPGMELMGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRNFVKHP 692 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 KDVV G VTV + VD K Sbjct: 693 KDVVAVGDIVTVWIEQVDTTK 713 [209][TOP] >UniRef100_C8MC48 S1 domain RNA-binding protein n=1 Tax=Staphylococcus aureus A9635 RepID=C8MC48_STAAU Length = 716 Score = 70.5 bits (171), Expect = 6e-11 Identities = 33/70 (47%), Positives = 45/70 (64%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+KEG + GTV V +FGAFV+ G +GLVH+SKL+ F KN D+V G V Sbjct: 635 LSIEDLKEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694 Query: 410 VKVLSVDAEK 439 V + S+D K Sbjct: 695 VWIYSIDKNK 704 [210][TOP] >UniRef100_C7XAY7 RNA-binding protein n=1 Tax=Parabacteroides sp. D13 RepID=C7XAY7_9PORP Length = 708 Score = 70.5 bits (171), Expect = 6e-11 Identities = 40/90 (44%), Positives = 51/90 (56%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 R +++VFA P + +ED+KEG G VT + FG FV+ G NGLVHIS+L Sbjct: 616 RQTIQVFAFDPTVKT------IEDLKEGQVLPGIVTNITNFGCFVDVGIKENGLVHISEL 669 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F + VV Q V VKVLSVD +K Sbjct: 670 ADRFVSDPTQVVSIHQHVKVKVLSVDLSRK 699 [211][TOP] >UniRef100_C5S7F4 RNA binding S1 domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7F4_CHRVI Length = 781 Score = 70.5 bits (171), Expect = 6e-11 Identities = 36/69 (52%), Positives = 47/69 (68%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 L+D++ G EGTVT V FGAFV+ G + +GLVHIS L+ F K+ +VV+ G V VK Sbjct: 642 LKDLEPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISVLSDRFVKDPHEVVKSGDLVKVK 701 Query: 416 VLSVDAEKK 442 VL VD E+K Sbjct: 702 VLEVDLERK 710 [212][TOP] >UniRef100_C4EGE5 Transcriptional accessory protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=C4EGE5_STRRS Length = 797 Score = 70.5 bits (171), Expect = 6e-11 Identities = 35/70 (50%), Positives = 46/70 (65%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 KL D+ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ ++VV+PG V V Sbjct: 636 KLSDLTPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSHNFVKDPREVVKPGDIVRV 695 Query: 413 KVLSVDAEKK 442 KVL VD +K Sbjct: 696 KVLDVDIPRK 705 [213][TOP] >UniRef100_A1ZG34 S1 RNA binding domain protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZG34_9SPHI Length = 764 Score = 70.5 bits (171), Expect = 6e-11 Identities = 37/83 (44%), Positives = 52/83 (62%) Frame = +2 Query: 194 AEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 373 A+ E A +ED+K G + G VT V +FGAFV+ G + +GLVHIS+L++ F + Sbjct: 618 AKFEVVEFAEGVNTIEDLKTGMKLNGVVTNVTKFGAFVDIGVHQDGLVHISELSNTFVSD 677 Query: 374 AKDVVQPGQKVTVKVLSVDAEKK 442 +VV+ QKV V VL VD E+K Sbjct: 678 PNEVVKVQQKVEVMVLDVDVERK 700 [214][TOP] >UniRef100_UPI0001BBAFC1 RNA-binding protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=UPI0001BBAFC1 Length = 708 Score = 70.1 bits (170), Expect = 7e-11 Identities = 40/90 (44%), Positives = 51/90 (56%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 R +++VFA P + +ED+KEG G VT + FG FV+ G NGLVHIS+L Sbjct: 616 RQTIQVFAFDPMVKT------IEDLKEGQVLPGIVTNITNFGCFVDVGIKENGLVHISEL 669 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F + VV Q V VKVLSVD +K Sbjct: 670 ADRFVSDPTQVVSIHQHVKVKVLSVDLSRK 699 [215][TOP] >UniRef100_Q67K87 Ribosomal protein S1-like RNA-binding domain n=1 Tax=Symbiobacterium thermophilum RepID=Q67K87_SYMTH Length = 764 Score = 70.1 bits (170), Expect = 7e-11 Identities = 35/82 (42%), Positives = 52/82 (63%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E P +KLED++ G E GTV V +FGAFV+ G + +GLVH+S+L+ + K+ Sbjct: 632 ELPQPIFRTDVLKLEDLQVGMELMGTVRNVVDFGAFVDIGVHEDGLVHVSQLSHKYVKHP 691 Query: 377 KDVVQPGQKVTVKVLSVDAEKK 442 +VVQ G V VKV+ VD +++ Sbjct: 692 SEVVQVGDVVRVKVIEVDLKRQ 713 [216][TOP] >UniRef100_Q5QUM6 Transcriptional accessory protein n=1 Tax=Idiomarina loihiensis RepID=Q5QUM6_IDILO Length = 776 Score = 70.1 bits (170), Expect = 7e-11 Identities = 35/70 (50%), Positives = 46/70 (65%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D+K G EG VT V FGAF++ G + +GLVHIS LA F + ++VV+ G V V Sbjct: 644 KVSDLKPGMLLEGVVTNVANFGAFIDVGVHQDGLVHISALADKFVSDPREVVKAGDIVKV 703 Query: 413 KVLSVDAEKK 442 KVL VD E+K Sbjct: 704 KVLEVDIERK 713 [217][TOP] >UniRef100_Q5NY37 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY37_AZOSE Length = 782 Score = 70.1 bits (170), Expect = 7e-11 Identities = 37/69 (53%), Positives = 45/69 (65%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 L+D+ G EGTVT V FGAFV+ G + +GLVHIS LA F K+ VV+ GQ V VK Sbjct: 644 LKDLAPGMMLEGTVTNVTNFGAFVDVGVHQDGLVHISALADRFVKDPHSVVKAGQVVKVK 703 Query: 416 VLSVDAEKK 442 VL VD +K Sbjct: 704 VLEVDLARK 712 [218][TOP] >UniRef100_Q47CF7 RNA binding S1 n=1 Tax=Dechloromonas aromatica RCB RepID=Q47CF7_DECAR Length = 772 Score = 70.1 bits (170), Expect = 7e-11 Identities = 34/70 (48%), Positives = 48/70 (68%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D++ G EG VT V FGAFV+ G + +GLVH+S L++ F K+ DVV+ GQ V V Sbjct: 648 KVSDLRPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSALSNTFVKDPHDVVKAGQVVKV 707 Query: 413 KVLSVDAEKK 442 KVL VD +++ Sbjct: 708 KVLEVDLQRQ 717 [219][TOP] >UniRef100_Q12AI9 RNA binding S1 n=1 Tax=Polaromonas sp. JS666 RepID=Q12AI9_POLSJ Length = 803 Score = 70.1 bits (170), Expect = 7e-11 Identities = 33/69 (47%), Positives = 48/69 (69%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 + D+KEG EGTV+ V FGAFV+ G + +GLVH+S+LA+ F +A++VV+ G V V+ Sbjct: 670 IRDLKEGMTLEGTVSNVAAFGAFVDIGVHQDGLVHVSQLANKFVNDAREVVKTGDIVKVR 729 Query: 416 VLSVDAEKK 442 V VD +K Sbjct: 730 VTEVDVARK 738 [220][TOP] >UniRef100_Q0VSY6 S1 RNA binding domain protein n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VSY6_ALCBS Length = 790 Score = 70.1 bits (170), Expect = 7e-11 Identities = 35/69 (50%), Positives = 46/69 (66%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 L+D+K+ EGTVT V FGAFV+ G + +GLVH+S LA F ++ VV PG V VK Sbjct: 644 LKDLKQNMILEGTVTNVTNFGAFVDVGVHQDGLVHVSALADKFVEDPHQVVAPGDIVKVK 703 Query: 416 VLSVDAEKK 442 VL VD ++K Sbjct: 704 VLDVDLDRK 712 [221][TOP] >UniRef100_C6C261 RNA binding S1 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C261_DESAD Length = 716 Score = 70.1 bits (170), Expect = 7e-11 Identities = 33/70 (47%), Positives = 47/70 (67%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D++EG G VT V FGAFV+ G + +GLVHIS++A F ++ VV PGQ + V Sbjct: 636 EVSDLREGMILNGIVTNVTAFGAFVDIGVHQDGLVHISRMADDFVRDPATVVHPGQALKV 695 Query: 413 KVLSVDAEKK 442 KVL VD ++K Sbjct: 696 KVLDVDIQRK 705 [222][TOP] >UniRef100_C3PH70 Putative transcriptional accessory protein n=1 Tax=Corynebacterium aurimucosum ATCC 700975 RepID=C3PH70_CORA7 Length = 759 Score = 70.1 bits (170), Expect = 7e-11 Identities = 33/70 (47%), Positives = 47/70 (67%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D+K G EGTVT V FGAF++ G + +GLVH+S ++ F + DVV+ GQ V V Sbjct: 634 KVSDLKPGMILEGTVTNVAAFGAFIDIGVHQDGLVHVSAMSHKFVSDPHDVVRSGQVVKV 693 Query: 413 KVLSVDAEKK 442 KV+ VD E++ Sbjct: 694 KVMEVDVERQ 703 [223][TOP] >UniRef100_B9JSI3 Putative uncharacterized protein n=1 Tax=Agrobacterium vitis S4 RepID=B9JSI3_AGRVS Length = 770 Score = 70.1 bits (170), Expect = 7e-11 Identities = 38/90 (42%), Positives = 54/90 (60%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RPS + A E+ + D+K G EGTVT V FGAFV+ G + +GLVH+S+L Sbjct: 631 RPSFKTAIFADGVEE------ITDLKPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQL 684 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F K+ +VV+ G V V+V+ VD ++K Sbjct: 685 ADKFVKDPHEVVKAGDVVKVRVVEVDVKRK 714 [224][TOP] >UniRef100_B7GFP8 Transcriptional accessory protein Tex, contains RNAse H and S1 domains n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GFP8_ANOFW Length = 733 Score = 70.1 bits (170), Expect = 7e-11 Identities = 35/71 (49%), Positives = 49/71 (69%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 +K+ED+++G E EGTV V +FG FV+ G +GLVHISKL++ + K+ DVV G V Sbjct: 647 LKMEDLRKGMELEGTVRNVVDFGVFVDIGVKQDGLVHISKLSTRYVKHPLDVVSVGDIVK 706 Query: 410 VKVLSVDAEKK 442 V V SVD +K+ Sbjct: 707 VWVDSVDLQKE 717 [225][TOP] >UniRef100_Q0FTR2 S1 RNA binding domain protein n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FTR2_9RHOB Length = 771 Score = 70.1 bits (170), Expect = 7e-11 Identities = 38/90 (42%), Positives = 52/90 (57%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RPS + + EQ + D+K G EGTVT V FGAFV+ G + +GLVH+S+L Sbjct: 627 RPSFKTASFTEGVEQ------ITDLKPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQL 680 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 A F K+ +VV+ G V V+V VD +K Sbjct: 681 ADRFVKDPHEVVKAGDVVRVRVTEVDVPRK 710 [226][TOP] >UniRef100_C9BB85 RNA binding protein S1 n=1 Tax=Enterococcus faecium 1,141,733 RepID=C9BB85_ENTFC Length = 726 Score = 70.1 bits (170), Expect = 7e-11 Identities = 37/81 (45%), Positives = 47/81 (58%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E PA + +ED+K G E GTV V +FGAFV+ G +GLVHISKL+ F K+ Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G VT + VD +K Sbjct: 693 TDVVSVGDIVTAWIEQVDTKK 713 [227][TOP] >UniRef100_C9AMT8 RNA binding protein S1 n=1 Tax=Enterococcus faecium Com15 RepID=C9AMT8_ENTFC Length = 726 Score = 70.1 bits (170), Expect = 7e-11 Identities = 37/81 (45%), Positives = 47/81 (58%) Frame = +2 Query: 197 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 376 E PA + +ED+K G E GTV +FGAFV+ G +GLVHISKL+ F K+ Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNAIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692 Query: 377 KDVVQPGQKVTVKVLSVDAEK 439 DVV G VTV + VD +K Sbjct: 693 TDVVSVGDIVTVWIEQVDTKK 713 [228][TOP] >UniRef100_C8STW5 RNA binding S1 domain protein n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8STW5_9RHIZ Length = 773 Score = 70.1 bits (170), Expect = 7e-11 Identities = 33/69 (47%), Positives = 49/69 (71%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 ++D+K G EGTVT V FGAF++ G + +GLVH+S+LA F K+A +VV+ G V V+ Sbjct: 647 IKDLKPGMLLEGTVTNVAAFGAFIDIGVHQDGLVHVSQLADRFIKDAHEVVKAGDVVKVR 706 Query: 416 VLSVDAEKK 442 V+ VD ++K Sbjct: 707 VVDVDIKRK 715 [229][TOP] >UniRef100_C7W342 RNA binding protein S1 n=1 Tax=Enterococcus faecalis E1Sol RepID=C7W342_ENTFA Length = 730 Score = 70.1 bits (170), Expect = 7e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+K G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ DVV G VT Sbjct: 646 LTMEDLKPGMEMQGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVT 705 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 706 VWVEDVDLKK 715 [230][TOP] >UniRef100_C7VC72 S1 RNA binding protein n=1 Tax=Enterococcus faecalis CH188 RepID=C7VC72_ENTFA Length = 730 Score = 70.1 bits (170), Expect = 7e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+K G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ DVV G VT Sbjct: 646 LTMEDLKPGMEMQGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVT 705 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 706 VWVEDVDLKK 715 [231][TOP] >UniRef100_C7UG75 RNA binding S1 n=1 Tax=Enterococcus faecalis ATCC 4200 RepID=C7UG75_ENTFA Length = 730 Score = 70.1 bits (170), Expect = 7e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+K G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ DVV G VT Sbjct: 646 LTMEDLKPGMEMQGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVT 705 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 706 VWVEDVDLKK 715 [232][TOP] >UniRef100_C7U6Q5 S1 RNA-binding domain-containing protein n=1 Tax=Enterococcus faecalis T3 RepID=C7U6Q5_ENTFA Length = 730 Score = 70.1 bits (170), Expect = 7e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+K G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ DVV G VT Sbjct: 646 LTMEDLKPGMEMQGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVT 705 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 706 VWVEDVDLKK 715 [233][TOP] >UniRef100_C4VGZ0 Protein YhgF n=5 Tax=Enterococcus faecalis RepID=C4VGZ0_ENTFA Length = 730 Score = 70.1 bits (170), Expect = 7e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+K G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ DVV G VT Sbjct: 646 LTMEDLKPGMEMQGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVT 705 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 706 VWVEDVDLKK 715 [234][TOP] >UniRef100_C2DDA7 S1 domain RNA-binding protein n=5 Tax=Enterococcus faecalis RepID=C2DDA7_ENTFA Length = 730 Score = 70.1 bits (170), Expect = 7e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+K G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ DVV G VT Sbjct: 646 LTMEDLKPGMEMQGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVT 705 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 706 VWVEDVDLKK 715 [235][TOP] >UniRef100_C2AH79 Transcriptional accessory protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=C2AH79_THECU Length = 810 Score = 70.1 bits (170), Expect = 7e-11 Identities = 38/90 (42%), Positives = 53/90 (58%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 RP+ + A A E LED+K G EG VT V FGAFV+ G + +GLVHIS + Sbjct: 657 RPAFKTAAFADGVET------LEDLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHISAM 710 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 + + + ++VV+PG V V+VL VD +K Sbjct: 711 SKNYVSDPREVVKPGDIVKVRVLDVDIPRK 740 [236][TOP] >UniRef100_C0X4X2 S1 domain RNA-binding protein n=3 Tax=Enterococcus faecalis RepID=C0X4X2_ENTFA Length = 730 Score = 70.1 bits (170), Expect = 7e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+K G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ DVV G VT Sbjct: 646 LTMEDLKPGMEMQGTVRNVIDFGAFVDIGVKQDGLVHISKLSTKFVKHPTDVVAVGDVVT 705 Query: 410 VKVLSVDAEK 439 V V VD +K Sbjct: 706 VWVEDVDLKK 715 [237][TOP] >UniRef100_B5JWZ5 RNA binding S1 domain protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JWZ5_9GAMM Length = 774 Score = 70.1 bits (170), Expect = 7e-11 Identities = 34/70 (48%), Positives = 48/70 (68%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 KL D+K+ EG VT V FGAFV+ G + +GLVHIS ++ F K+ +DVV+ G+ V V Sbjct: 640 KLSDLKDDMILEGVVTNVTHFGAFVDVGVHQDGLVHISAMSHEFVKDPRDVVKAGEVVKV 699 Query: 413 KVLSVDAEKK 442 KV++VD +K Sbjct: 700 KVMAVDVARK 709 [238][TOP] >UniRef100_A3WJ57 Transcriptional accessory protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WJ57_9GAMM Length = 768 Score = 70.1 bits (170), Expect = 7e-11 Identities = 33/70 (47%), Positives = 47/70 (67%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D++ G EG VT V FGAFV+ G + +GLVHIS LA F + +D+V+ G VTV Sbjct: 643 KVSDLEPGMTLEGVVTNVANFGAFVDIGVHQDGLVHISALADTFVSDPRDIVKAGDIVTV 702 Query: 413 KVLSVDAEKK 442 +V+ VD ++K Sbjct: 703 RVVEVDIDRK 712 [239][TOP] >UniRef100_UPI0001BB9DBF transcriptional accessory protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=UPI0001BB9DBF Length = 789 Score = 69.7 bits (169), Expect = 9e-11 Identities = 34/69 (49%), Positives = 48/69 (69%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+L + F + VV+PGQ V V Sbjct: 640 EVAQLSEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELTNEFVADPHKVVKPGQIVQV 699 Query: 413 KVLSVDAEK 439 +VL+VDAE+ Sbjct: 700 RVLNVDAER 708 [240][TOP] >UniRef100_UPI0001B4F31E transcription accessory protein n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F31E Length = 800 Score = 69.7 bits (169), Expect = 9e-11 Identities = 34/70 (48%), Positives = 46/70 (65%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V Sbjct: 646 KIGDLASGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVRV 705 Query: 413 KVLSVDAEKK 442 KVL VD +K Sbjct: 706 KVLDVDIPRK 715 [241][TOP] >UniRef100_Q8YLP7 Alr5249 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YLP7_ANASP Length = 719 Score = 69.7 bits (169), Expect = 9e-11 Identities = 35/68 (51%), Positives = 48/68 (70%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 ++ D++EG E EG VT V FGAFV+ G + +GLVHIS+LA F + K VV+ GQ V V Sbjct: 639 EITDLQEGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKKVVKVGQVVKV 698 Query: 413 KVLSVDAE 436 +VL V+A+ Sbjct: 699 RVLEVNAK 706 [242][TOP] >UniRef100_Q7UUG1 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7UUG1_RHOBA Length = 750 Score = 69.7 bits (169), Expect = 9e-11 Identities = 30/69 (43%), Positives = 47/69 (68%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 +ED++EG EG +T V FGAF++ G + +GL+H+S+LA+ F + +VV G V VK Sbjct: 672 MEDLREGMVLEGVITNVTHFGAFIDLGVHQDGLIHVSQLANQFVSDPSEVVSVGDVVKVK 731 Query: 416 VLSVDAEKK 442 VL +D ++K Sbjct: 732 VLEIDLDRK 740 [243][TOP] >UniRef100_Q0A8L6 RNA binding S1 domain protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8L6_ALHEH Length = 782 Score = 69.7 bits (169), Expect = 9e-11 Identities = 35/69 (50%), Positives = 46/69 (66%) Frame = +2 Query: 236 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 415 L+D+ G EGTVT V FGAFV+ G + +GLVHIS LA F ++ +VV+ G V VK Sbjct: 647 LQDLAPGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISALAERFVRDPHEVVKAGDIVKVK 706 Query: 416 VLSVDAEKK 442 V+ VD E+K Sbjct: 707 VMEVDLERK 715 [244][TOP] >UniRef100_C6D0I6 RNA binding S1 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D0I6_PAESJ Length = 747 Score = 69.7 bits (169), Expect = 9e-11 Identities = 37/90 (41%), Positives = 51/90 (56%) Frame = +2 Query: 170 VRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISK 349 +RP E P + +ED+ G E +GTV V +FGAF++ G +GLVHIS+ Sbjct: 647 LRPGRDPREELPPPIFHTDVLNIEDLTPGMELQGTVRNVIDFGAFIDIGIKNDGLVHISQ 706 Query: 350 LASGFTKNAKDVVQPGQKVTVKVLSVDAEK 439 ++ F K+ DVV G VTV VL VD +K Sbjct: 707 MSDKFVKHPMDVVSVGDNVTVWVLGVDLKK 736 [245][TOP] >UniRef100_D0BMP4 S1 RNA-binding protein n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMP4_9LACT Length = 731 Score = 69.7 bits (169), Expect = 9e-11 Identities = 32/70 (45%), Positives = 46/70 (65%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED++ G E +GT+ V +FGAFV+ G +GLVHIS++ GF K+ DVV G VT Sbjct: 647 LSMEDIQVGMELQGTIRNVVDFGAFVDIGVKQDGLVHISRMKKGFVKHPSDVVAVGDIVT 706 Query: 410 VKVLSVDAEK 439 V V +D +K Sbjct: 707 VWVTEIDMKK 716 [246][TOP] >UniRef100_C8N9I1 Histidine triad domain-containing protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9I1_9GAMM Length = 769 Score = 69.7 bits (169), Expect = 9e-11 Identities = 42/107 (39%), Positives = 58/107 (54%) Frame = +2 Query: 122 RPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGA 301 +P R P G Q A FAE ++ D++ G EG V+ V FGA Sbjct: 632 KPGRDPRGEFQTA---------TFAEG--------VHEISDLQPGMILEGVVSNVANFGA 674 Query: 302 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 FV+ G + +GLVHIS LA + ++ +D+V+ G V VKVL VDAE+K Sbjct: 675 FVDIGVHQDGLVHISALADRYVQDPRDIVKAGDVVKVKVLEVDAERK 721 [247][TOP] >UniRef100_C8ATX0 S1 RNA-binding domain-containing protein n=1 Tax=Staphylococcus aureus subsp. aureus M876 RepID=C8ATX0_STAAU Length = 716 Score = 69.7 bits (169), Expect = 9e-11 Identities = 33/70 (47%), Positives = 45/70 (64%) Frame = +2 Query: 230 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 409 + +ED+KEG + GTV V +FGAFV+ G +GLVH+SKL+ F KN D+V G V Sbjct: 635 LSIEDLKEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694 Query: 410 VKVLSVDAEK 439 V + S+D K Sbjct: 695 VWIHSIDKNK 704 [248][TOP] >UniRef100_C7PIE5 RNA binding S1 domain protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PIE5_CHIPD Length = 760 Score = 69.7 bits (169), Expect = 9e-11 Identities = 39/90 (43%), Positives = 50/90 (55%) Frame = +2 Query: 173 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 352 +PS E E A K+ED+K G G VT + FGAFV+ G +GLVHIS L Sbjct: 610 KPSRDPRDEIAIFEYAEGIHKMEDLKVGMTLPGVVTNITNFGAFVDIGVKQDGLVHISHL 669 Query: 353 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 442 ++ F N + V+ QKVTV VL VD +K Sbjct: 670 SNRFISNPNEAVKLNQKVTVTVLEVDPSRK 699 [249][TOP] >UniRef100_C6WCU3 RNA binding S1 domain protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCU3_ACTMD Length = 785 Score = 69.7 bits (169), Expect = 9e-11 Identities = 35/70 (50%), Positives = 46/70 (65%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 K+ D+K G EG VT V FGAFV+ G + +GLVHIS L+ + K+ +DVV+ G V V Sbjct: 639 KIADLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHISALSDTYVKDPRDVVKSGDVVRV 698 Query: 413 KVLSVDAEKK 442 KVL VD +K Sbjct: 699 KVLEVDIPRK 708 [250][TOP] >UniRef100_C6NZN2 RNA binding S1 domain protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZN2_9GAMM Length = 801 Score = 69.7 bits (169), Expect = 9e-11 Identities = 36/70 (51%), Positives = 47/70 (67%) Frame = +2 Query: 233 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 412 +L+D++ G EG VT V FGAFV+ G + +GLVHIS LA F K+ VV+ GQ V V Sbjct: 672 ELKDLEPGMILEGVVTNVAAFGAFVDIGVHQDGLVHISALADKFVKDPHSVVKAGQIVKV 731 Query: 413 KVLSVDAEKK 442 KVL VD ++K Sbjct: 732 KVLEVDVKRK 741