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[1][TOP]
>UniRef100_Q5QEB2 Elongation factor Ts n=1 Tax=Chlamydomonas reinhardtii
RepID=Q5QEB2_CHLRE
Length = 1013
Score = 295 bits (756), Expect = 8e-79
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +1
Query: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 192
AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT
Sbjct: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 72
Query: 193 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL
Sbjct: 73 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 132
Query: 373 KSAVAAEASAEESDDIITEPDREGADATDDDED 471
KSAVAAEASAEESDDIITEPDREGADATDDDED
Sbjct: 133 KSAVAAEASAEESDDIITEPDREGADATDDDED 165
[2][TOP]
>UniRef100_Q5QEB1 Plastid-specific ribosomal protein-7 n=1 Tax=Chlamydomonas
reinhardtii RepID=Q5QEB1_CHLRE
Length = 560
Score = 295 bits (756), Expect = 8e-79
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +1
Query: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 192
AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT
Sbjct: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 72
Query: 193 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL
Sbjct: 73 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 132
Query: 373 KSAVAAEASAEESDDIITEPDREGADATDDDED 471
KSAVAAEASAEESDDIITEPDREGADATDDDED
Sbjct: 133 KSAVAAEASAEESDDIITEPDREGADATDDDED 165
[3][TOP]
>UniRef100_Q5QEB0 Chloroplast polyprotein of elongation factor Ts n=1
Tax=Chlamydomonas reinhardtii RepID=Q5QEB0_CHLRE
Length = 603
Score = 295 bits (756), Expect = 8e-79
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +1
Query: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 192
AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT
Sbjct: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 72
Query: 193 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL
Sbjct: 73 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 132
Query: 373 KSAVAAEASAEESDDIITEPDREGADATDDDED 471
KSAVAAEASAEESDDIITEPDREGADATDDDED
Sbjct: 133 KSAVAAEASAEESDDIITEPDREGADATDDDED 165
[4][TOP]
>UniRef100_A8J641 Plastid-specific ribosomal protein 7 n=1 Tax=Chlamydomonas
reinhardtii RepID=A8J641_CHLRE
Length = 560
Score = 295 bits (756), Expect = 8e-79
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +1
Query: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 192
AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT
Sbjct: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 72
Query: 193 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL
Sbjct: 73 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 132
Query: 373 KSAVAAEASAEESDDIITEPDREGADATDDDED 471
KSAVAAEASAEESDDIITEPDREGADATDDDED
Sbjct: 133 KSAVAAEASAEESDDIITEPDREGADATDDDED 165
[5][TOP]
>UniRef100_A8J639 Polyprotein of PSRP-7 and EF-Ts, splice variant 2 n=1
Tax=Chlamydomonas reinhardtii RepID=A8J639_CHLRE
Length = 603
Score = 295 bits (756), Expect = 8e-79
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +1
Query: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 192
AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT
Sbjct: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 72
Query: 193 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL
Sbjct: 73 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 132
Query: 373 KSAVAAEASAEESDDIITEPDREGADATDDDED 471
KSAVAAEASAEESDDIITEPDREGADATDDDED
Sbjct: 133 KSAVAAEASAEESDDIITEPDREGADATDDDED 165
[6][TOP]
>UniRef100_A8J637 Elongation factor Ts n=1 Tax=Chlamydomonas reinhardtii
RepID=A8J637_CHLRE
Length = 1013
Score = 295 bits (756), Expect = 8e-79
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +1
Query: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 192
AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT
Sbjct: 13 AHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVT 72
Query: 193 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL
Sbjct: 73 TVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 132
Query: 373 KSAVAAEASAEESDDIITEPDREGADATDDDED 471
KSAVAAEASAEESDDIITEPDREGADATDDDED
Sbjct: 133 KSAVAAEASAEESDDIITEPDREGADATDDDED 165
[7][TOP]
>UniRef100_B8BU42 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8BU42_THAPS
Length = 398
Score = 88.2 bits (217), Expect = 3e-16
Identities = 43/103 (41%), Positives = 68/103 (66%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L D++ G+ E TV T+ +GAF++ GA ++ LVH+S+L+ F N +DVV+ G+K+TV+
Sbjct: 138 LADLEIGASVEATVKTITAYGAFLDIGAKSDALVHVSRLSDDFVANVEDVVKAGEKITVR 197
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADAT 456
++SVD EK ++++ ++S AEASA P R GAD T
Sbjct: 198 IVSVDTEKNQIAVTMRSE-EAEASAARPTKRRERPQRSGADQT 239
Score = 58.9 bits (141), Expect = 2e-07
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Frame = +1
Query: 112 APAAEQAA--KAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGA---------NTNGLVHIS 258
A QAA KAI + + +G V + FGAFV F + +GLVHIS
Sbjct: 236 ADQTSQAASIKAISDKGFDDSKFIDGEVVSTLAFGAFVRFDSAQLGEGLEGEVDGLVHIS 295
Query: 259 KLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEAS 399
LA G T N DV G KV+V+V SV+ E R+SL + + EA+
Sbjct: 296 ALAEGRTANVSDVAAVGDKVSVRVRSVEPEAGRISLSMITKEQEEAA 342
[8][TOP]
>UniRef100_C1N2E8 Elongation factor Ts n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N2E8_9CHLO
Length = 844
Score = 87.4 bits (215), Expect = 4e-16
Identities = 54/134 (40%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
Frame = +1
Query: 58 RRQVAFTGVRPSVRVFAEAPAAEQAAKAIKL------EDVKEGSEYEGTVTTVEEFGAFV 219
RR VA V V E P + +K E V G+E++G V V+E+G FV
Sbjct: 29 RRAVALRATVAEVEVSEEKPKPKGKKPFVKKNVTVTDEQVVVGAEFKGVVKRVQEYGCFV 88
Query: 220 NFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEAS 399
+FGA ++GLVHIS+L GF +N DVV Q+V V + S+DAEK R+SL +K +A
Sbjct: 89 DFGAKSDGLVHISELKDGFVENVADVVSENQEVQVFIKSIDAEKGRISLTMKPPPSA--- 145
Query: 400 AEESDDIITEPDRE 441
AE + E +RE
Sbjct: 146 AELETILAKEAERE 159
Score = 66.2 bits (160), Expect = 1e-09
Identities = 31/90 (34%), Positives = 57/90 (63%)
Frame = +1
Query: 106 AEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 285
A+ A+E++ KA++ +K+G+ EG V +++ FGAFV GLVH+++++ +
Sbjct: 167 AKKAASEESMKAVRA--IKKGTTVEGVVKSIQAFGAFVEIAEGVEGLVHVTEMSEDYNVK 224
Query: 286 AKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
+D V G+ V V+VL VD +K ++S++ K
Sbjct: 225 PEDFVTVGETVKVRVLGVDGQKVKLSMKEK 254
[9][TOP]
>UniRef100_A4A335 S1 RNA binding domain protein n=1 Tax=Congregibacter litoralis KT71
RepID=A4A335_9GAMM
Length = 792
Score = 87.0 bits (214), Expect = 6e-16
Identities = 46/109 (42%), Positives = 67/109 (61%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E A+ A K+ D+K EGTVT V FGAFV+ G + +GLVHIS +A F K+
Sbjct: 632 EFKTAKLQAGVEKITDLKPDMVLEGTVTNVTSFGAFVDVGVHQDGLVHISAMAEKFVKDP 691
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPD 435
+DV + G VTVKV+S+D E+KRV L ++ + +AE S ++ + P+
Sbjct: 692 RDVAKAGDIVTVKVMSIDVERKRVGLSMRLSDSAEDSQQDPGQRRSRPE 740
[10][TOP]
>UniRef100_A1APM8 RNA binding S1 domain protein n=1 Tax=Pelobacter propionicus DSM
2379 RepID=A1APM8_PELPD
Length = 723
Score = 85.9 bits (211), Expect = 1e-15
Identities = 42/79 (53%), Positives = 56/79 (70%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ED++EG +G VT V FGAFV+ G + +GLVHIS LA+ F K+ D VQ GQ V V
Sbjct: 642 KIEDLREGMVLQGVVTNVTAFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQAGQLVRV 701
Query: 325 KVLSVDAEKKRVSLELKSA 381
KVLS D ++KR+SL ++ A
Sbjct: 702 KVLSADPKRKRISLSIREA 720
[11][TOP]
>UniRef100_A1VC50 RNA binding S1 domain protein n=1 Tax=Desulfovibrio vulgaris DP4
RepID=A1VC50_DESVV
Length = 723
Score = 85.5 bits (210), Expect = 2e-15
Identities = 44/97 (45%), Positives = 64/97 (65%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP+ VFA A K++DV+ G E G VT V +FGAFV+ G + +GLVH+S+L
Sbjct: 627 RPAFEVFAFAEGVN------KVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQL 680
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
A F ++ +VV PG+KV V+VL VD +++R++L LK
Sbjct: 681 ADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTLK 717
[12][TOP]
>UniRef100_Q729V2 S1 RNA binding domain protein n=2 Tax=Desulfovibrio vulgaris
RepID=Q729V2_DESVH
Length = 723
Score = 85.5 bits (210), Expect = 2e-15
Identities = 44/97 (45%), Positives = 64/97 (65%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP+ VFA A K++DV+ G E G VT V +FGAFV+ G + +GLVH+S+L
Sbjct: 627 RPAFEVFAFAEGVN------KVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQL 680
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
A F ++ +VV PG+KV V+VL VD +++R++L LK
Sbjct: 681 ADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTLK 717
[13][TOP]
>UniRef100_Q92DB8 Lin0897 protein n=1 Tax=Listeria innocua RepID=Q92DB8_LISIN
Length = 725
Score = 85.1 bits (209), Expect = 2e-15
Identities = 46/111 (41%), Positives = 64/111 (57%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 378
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +++
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRN 719
[14][TOP]
>UniRef100_A0AH17 Complete genome n=1 Tax=Listeria welshimeri serovar 6b str.
SLCC5334 RepID=A0AH17_LISW6
Length = 725
Score = 85.1 bits (209), Expect = 2e-15
Identities = 46/111 (41%), Positives = 64/111 (57%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 378
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +++
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRN 719
[15][TOP]
>UniRef100_Q2BJK7 Conserved protein with nucleic acid-binding protein-like domain
(Transcriptional accessory protein) n=1
Tax=Neptuniibacter caesariensis RepID=Q2BJK7_9GAMM
Length = 714
Score = 85.1 bits (209), Expect = 2e-15
Identities = 40/78 (51%), Positives = 58/78 (74%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
+ D++ G EGT++ V FGAFV+ G + +GLVHIS+LA+ F K+ DVV PGQ VTV+
Sbjct: 636 ITDLQVGMRLEGTISNVTNFGAFVDLGVHQDGLVHISQLANKFVKDPHDVVSPGQIVTVR 695
Query: 328 VLSVDAEKKRVSLELKSA 381
VL VD ++KR+SL +++A
Sbjct: 696 VLEVDEKRKRISLTMRTA 713
[16][TOP]
>UniRef100_B3E6B1 RNA binding S1 domain protein n=1 Tax=Geobacter lovleyi SZ
RepID=B3E6B1_GEOLS
Length = 762
Score = 84.7 bits (208), Expect = 3e-15
Identities = 42/104 (40%), Positives = 64/104 (61%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D++EG +G VT V FGAFV+ G + +GLVH+S LA+ F K+ D VQ GQ V V
Sbjct: 642 EISDLQEGMILQGVVTNVTAFGAFVDIGVHQDGLVHVSHLANRFIKDPNDAVQVGQVVKV 701
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADAT 456
KVLS D ++KR++L +K + A+ ++ +P +E T
Sbjct: 702 KVLSADPQRKRIALSIKESEPGGAAVRKAASPAAQPKQEPKSTT 745
[17][TOP]
>UniRef100_C6E3L9 RNA binding S1 domain protein n=1 Tax=Geobacter sp. M21
RepID=C6E3L9_GEOSM
Length = 756
Score = 84.3 bits (207), Expect = 4e-15
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+ + D+KEG +G VT V FGAFV+ G + +GLVH+S+L FTK+ D V+ GQ V
Sbjct: 641 VTIADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLTHRFTKDPNDAVKVGQIVK 700
Query: 322 VKVLSVDAEKKRVSLELKSAVAAEA 396
VKVLS D E+KR+SL +K A +A
Sbjct: 701 VKVLSADPERKRISLSIKQAEPEKA 725
[18][TOP]
>UniRef100_UPI0001B44404 hypothetical protein LmonocytFSL_06170 n=1 Tax=Listeria
monocytogenes FSL J2-003 RepID=UPI0001B44404
Length = 725
Score = 84.0 bits (206), Expect = 5e-15
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[19][TOP]
>UniRef100_UPI0001B43D06 hypothetical protein LmonocytogFSL_06115 n=1 Tax=Listeria
monocytogenes FSL N1-017 RepID=UPI0001B43D06
Length = 725
Score = 84.0 bits (206), Expect = 5e-15
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[20][TOP]
>UniRef100_UPI0001B43B10 hypothetical protein LmonF_10391 n=1 Tax=Listeria monocytogenes FSL
F2-515 RepID=UPI0001B43B10
Length = 301
Score = 84.0 bits (206), Expect = 5e-15
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 185 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 244
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +
Sbjct: 245 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 293
[21][TOP]
>UniRef100_Q8Y8K3 Lmo0898 protein n=2 Tax=Listeria monocytogenes RepID=Q8Y8K3_LISMO
Length = 725
Score = 84.0 bits (206), Expect = 5e-15
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[22][TOP]
>UniRef100_Q721R8 S1 RNA binding domain protein n=1 Tax=Listeria monocytogenes str.
4b F2365 RepID=Q721R8_LISMF
Length = 725
Score = 84.0 bits (206), Expect = 5e-15
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[23][TOP]
>UniRef100_Q4EKE0 S1 RNA binding domain protein n=1 Tax=Listeria monocytogenes str.
4b H7858 RepID=Q4EKE0_LISMO
Length = 725
Score = 84.0 bits (206), Expect = 5e-15
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[24][TOP]
>UniRef100_C8KAD9 S1 RNA binding domain-containing protein n=2 Tax=Listeria
monocytogenes RepID=C8KAD9_LISMO
Length = 725
Score = 84.0 bits (206), Expect = 5e-15
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[25][TOP]
>UniRef100_C8K102 S1 RNA-binding domain-containing protein n=2 Tax=Listeria
monocytogenes RepID=C8K102_LISMO
Length = 725
Score = 84.0 bits (206), Expect = 5e-15
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[26][TOP]
>UniRef100_C8JTR8 S1 RNA binding domain-containing protein n=1 Tax=Listeria
monocytogenes FSL N3-165 RepID=C8JTR8_LISMO
Length = 725
Score = 84.0 bits (206), Expect = 5e-15
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[27][TOP]
>UniRef100_UPI0001B41F87 hypothetical protein LmonL_19961 n=1 Tax=Listeria monocytogenes
LO28 RepID=UPI0001B41F87
Length = 105
Score = 83.6 bits (205), Expect = 6e-15
Identities = 43/88 (48%), Positives = 56/88 (63%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E PA I +ED+K+G E +GTV V +FGAFV+ G +GLVHISKL++ F KN
Sbjct: 10 ELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNP 69
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
DVV G VTV V VD +K R++L +
Sbjct: 70 MDVVSVGDVVTVWVDEVDTKKNRIALTM 97
[28][TOP]
>UniRef100_B8DG61 Putative uncharacterized protein n=1 Tax=Listeria monocytogenes
HCC23 RepID=B8DG61_LISMH
Length = 725
Score = 83.6 bits (205), Expect = 6e-15
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +1
Query: 46 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 225
G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+
Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668
Query: 226 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +
Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDIVTVWVDEVDTKKNRIALTM 717
[29][TOP]
>UniRef100_Q1JW78 RNA binding S1 n=1 Tax=Desulfuromonas acetoxidans DSM 684
RepID=Q1JW78_DESAC
Length = 747
Score = 83.6 bits (205), Expect = 6e-15
Identities = 50/121 (41%), Positives = 70/121 (57%)
Frame = +1
Query: 28 VLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEF 207
+L+P R P RRQ R V+ ++ D++ G +G+VT V F
Sbjct: 643 LLKPGRDP--RRQFETASFRDDVQ---------------EMSDLQPGMVLQGSVTNVAAF 685
Query: 208 GAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 387
GAFV+ G + +GLVHIS+LA F KN ++V+ GQ V VKVLSVD +KR+SL +K A A
Sbjct: 686 GAFVDIGVHQDGLVHISELADRFVKNPAEIVKVGQVVHVKVLSVDTTRKRISLSIKQAGA 745
Query: 388 A 390
+
Sbjct: 746 S 746
[30][TOP]
>UniRef100_C6J5S2 RNA binding S1 domain-containing protein n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6J5S2_9BACL
Length = 743
Score = 83.6 bits (205), Expect = 6e-15
Identities = 45/104 (43%), Positives = 61/104 (58%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP E P +K+ED+ G E +GTV V +FGAFV+ G +GLVHIS+L
Sbjct: 640 RPGRDPREELPPPIFRTDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKNDGLVHISQL 699
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEA 396
++G+ K+ DVV G VTV VL+VD +K RV L ++ EA
Sbjct: 700 SNGYVKHPMDVVSVGDNVTVWVLNVDVKKGRVGLTMRGPAGIEA 743
[31][TOP]
>UniRef100_C0E9B9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum
DSM 5476 RepID=C0E9B9_9CLOT
Length = 717
Score = 83.6 bits (205), Expect = 6e-15
Identities = 43/96 (44%), Positives = 63/96 (65%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P + ++L+D+K G E +GTV V +FGAFV+ G + +GLVH+S+LA+ F K+
Sbjct: 622 ELPKPLLRSDVLELKDLKPGMELKGTVRNVIDFGAFVDIGVHEDGLVHVSQLANRFVKHP 681
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEA 396
DVV+ G VTV VL VD ++KR+SL +K +A
Sbjct: 682 LDVVKVGDVVTVWVLDVDLKRKRISLTMKGRPKTDA 717
[32][TOP]
>UniRef100_B7X315 RNA binding S1 domain protein n=1 Tax=Comamonas testosteroni KF-1
RepID=B7X315_COMTE
Length = 793
Score = 83.6 bits (205), Expect = 6e-15
Identities = 38/76 (50%), Positives = 59/76 (77%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+++ F ++A++VV+ GQ V VK
Sbjct: 658 IKDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVK 717
Query: 328 VLSVDAEKKRVSLELK 375
VL VD ++KR+SL +K
Sbjct: 718 VLEVDVDRKRISLTMK 733
[33][TOP]
>UniRef100_Q2L128 Transcription accessory protein n=1 Tax=Bordetella avium 197N
RepID=Q2L128_BORA1
Length = 790
Score = 83.2 bits (204), Expect = 8e-15
Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 8/111 (7%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L+D+ G EG VT V FGAFV+ G + +GLVHIS LA F K+ +DVV+ GQ VTVK
Sbjct: 664 LKDLHPGMLLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVK 723
Query: 328 VLSVDAEKKRVSL--------ELKSAVAAEASAEESDDIITEPDREGADAT 456
VL VD ++KRV+L E + A A A E + + +GA T
Sbjct: 724 VLEVDVQRKRVALTMRLNDNAEPRRAAPAAARGERAGGTPRRRNEDGARGT 774
[34][TOP]
>UniRef100_B8I5S2 RNA binding S1 domain protein n=1 Tax=Clostridium cellulolyticum
H10 RepID=B8I5S2_CLOCE
Length = 718
Score = 83.2 bits (204), Expect = 8e-15
Identities = 42/89 (47%), Positives = 57/89 (64%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P + + +ED+K+G GTV V +FGAFV+ G + +GLVHIS+LA + KN
Sbjct: 627 ELPKPMLHSDVLHMEDLKQGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKYVKNP 686
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
DVV G V VK+L VD E+KR+SL +K
Sbjct: 687 MDVVAVGDIVKVKILEVDVERKRISLTMK 715
[35][TOP]
>UniRef100_A6VTC2 RNA binding S1 domain protein n=1 Tax=Marinomonas sp. MWYL1
RepID=A6VTC2_MARMS
Length = 720
Score = 83.2 bits (204), Expect = 8e-15
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
KLEDV+EG EG VT V FGAFV+ G + +GL+HIS+LA F K+ +D+V+ GQ V V
Sbjct: 642 KLEDVQEGMTLEGVVTNVAAFGAFVDLGVHQDGLIHISQLADRFVKDPRDLVRVGQVVKV 701
Query: 325 KVLSVDAEKKRVSLE 369
VL VD ++KR++L+
Sbjct: 702 TVLEVDVQRKRIALK 716
[36][TOP]
>UniRef100_A5WHC1 RNA binding S1 domain protein n=1 Tax=Psychrobacter sp. PRwf-1
RepID=A5WHC1_PSYWF
Length = 849
Score = 83.2 bits (204), Expect = 8e-15
Identities = 40/100 (40%), Positives = 65/100 (65%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
+ D++EG + EG VT V FG FV+ G + +GLVHIS++A+ F ++ ++V+PG V+V+
Sbjct: 691 VSDLEEGMQLEGVVTNVTGFGCFVDVGVHQDGLVHISEMANDFVEDPMNLVKPGDIVSVR 750
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGA 447
V+S+DA++ R+ +KS AA A S T+ + E A
Sbjct: 751 VISIDAKRNRIGFSMKSEDAASAKRATSPQRSTDKNAENA 790
[37][TOP]
>UniRef100_C2KZ93 S1 domain RNA-binding protein n=1 Tax=Oribacterium sinus F0268
RepID=C2KZ93_9FIRM
Length = 753
Score = 83.2 bits (204), Expect = 8e-15
Identities = 43/89 (48%), Positives = 59/89 (66%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
+ PA ++LED+KEG +GTV V +FGAFV+ G + +GLVHIS L+ F K+
Sbjct: 662 DVPAPILREDVLELEDLKEGMVLQGTVRNVIDFGAFVDIGVHQDGLVHISALSKKFVKHP 721
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
DVV+ G V VKVLSVD +K++SL +K
Sbjct: 722 LDVVKLGDIVKVKVLSVDVARKKISLSMK 750
[38][TOP]
>UniRef100_Q65N46 Putative RNA binding protein containing S1 RNA binding domain,YdcI
n=1 Tax=Bacillus licheniformis ATCC 14580
RepID=Q65N46_BACLD
Length = 720
Score = 82.8 bits (203), Expect = 1e-14
Identities = 45/88 (51%), Positives = 55/88 (62%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P ++LED+KEG E +GTV V +FGAFV+ G +GLVHISKL+ F K+
Sbjct: 629 EVPKPLLKTDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSHSFVKHP 688
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
DVV G VTV V VDA K RVSL +
Sbjct: 689 LDVVSVGDIVTVWVEDVDAAKGRVSLSM 716
[39][TOP]
>UniRef100_Q3IZT3 RNA binding protein n=1 Tax=Rhodobacter sphaeroides 2.4.1
RepID=Q3IZT3_RHOS4
Length = 773
Score = 82.8 bits (203), Expect = 1e-14
Identities = 43/100 (43%), Positives = 65/100 (65%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 646 EISDLKPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 705
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 444
+V+ VD +KR+ L ++ +A+A A+ S+ EP R+G
Sbjct: 706 RVVEVDVARKRIGLTMRKD-SADARAQASERRSAEPPRKG 744
[40][TOP]
>UniRef100_B9KLW9 RNA binding S1 domain protein n=1 Tax=Rhodobacter sphaeroides KD131
RepID=B9KLW9_RHOSK
Length = 773
Score = 82.8 bits (203), Expect = 1e-14
Identities = 43/100 (43%), Positives = 65/100 (65%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 646 EISDLKPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 705
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 444
+V+ VD +KR+ L ++ +A+A A+ S+ EP R+G
Sbjct: 706 RVVEVDVARKRIGLTMRKD-SADARAQASERRSAEPPRKG 744
[41][TOP]
>UniRef100_A3PMG6 RNA binding S1 domain protein n=1 Tax=Rhodobacter sphaeroides ATCC
17029 RepID=A3PMG6_RHOS1
Length = 773
Score = 82.8 bits (203), Expect = 1e-14
Identities = 43/100 (43%), Positives = 65/100 (65%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 646 EISDLKPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 705
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 444
+V+ VD +KR+ L ++ +A+A A+ S+ EP R+G
Sbjct: 706 RVVEVDVARKRIGLTMRKD-SADARAQASERRSAEPPRKG 744
[42][TOP]
>UniRef100_A5ZAL1 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
ATCC 27560 RepID=A5ZAL1_9FIRM
Length = 711
Score = 82.8 bits (203), Expect = 1e-14
Identities = 41/89 (46%), Positives = 59/89 (66%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P + + +D+KEG E +GTV V +FGAFV+ G + +GLVHIS++++ F K+
Sbjct: 622 EMPKPVLKSDVLDFDDLKEGMELKGTVRNVIDFGAFVDIGVHQDGLVHISEMSNKFIKHP 681
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
DVV G V V+VLSVD E+KR+ L +K
Sbjct: 682 LDVVSVGDVVDVRVLSVDKERKRIQLSMK 710
[43][TOP]
>UniRef100_A9U7P4 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U7P4_PHYPA
Length = 398
Score = 82.8 bits (203), Expect = 1e-14
Identities = 44/98 (44%), Positives = 61/98 (62%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP E P +K+ED+ G E +GTV V +FGAFV+ G ++GLVHIS+L
Sbjct: 296 RPGRDPREELPLPIFRTDVLKIEDLTPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQL 355
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 378
+SG+ K+ DVV G VTV VL+VD +K RV L +++
Sbjct: 356 SSGYVKHPMDVVSVGDNVTVWVLNVDLKKGRVGLTMRN 393
[44][TOP]
>UniRef100_UPI0001851521 transcription accessory protein n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851521
Length = 723
Score = 82.4 bits (202), Expect = 1e-14
Identities = 44/79 (55%), Positives = 54/79 (68%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+ G E +GTV V +FGAFV+ G +GLVHISKL GF K+ DVV GQ VT
Sbjct: 640 LKLEDLAVGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPLDVVSVGQVVT 699
Query: 322 VKVLSVDAEKKRVSLELKS 378
V V SVD +K RV+L + S
Sbjct: 700 VWVDSVDVQKGRVALTMLS 718
[45][TOP]
>UniRef100_UPI00018506B3 transcription accessory protein n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI00018506B3
Length = 727
Score = 82.4 bits (202), Expect = 1e-14
Identities = 44/79 (55%), Positives = 54/79 (68%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+ G E +GTV V +FGAFV+ G +GLVHISKL GF K+ DVV GQ VT
Sbjct: 644 LKLEDLAVGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPLDVVSVGQVVT 703
Query: 322 VKVLSVDAEKKRVSLELKS 378
V V SVD +K RV+L + S
Sbjct: 704 VWVDSVDVQKGRVALTMLS 722
[46][TOP]
>UniRef100_Q7WGI8 Transcription accessory protein n=1 Tax=Bordetella bronchiseptica
RepID=Q7WGI8_BORBR
Length = 791
Score = 82.4 bits (202), Expect = 1e-14
Identities = 44/82 (53%), Positives = 55/82 (67%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L D+ G EG VT V FGAFV+ G + +GLVHIS LA F K+ +DVV+ GQ VTVK
Sbjct: 664 LNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVK 723
Query: 328 VLSVDAEKKRVSLELKSAVAAE 393
VL VD +KRV+L ++ AAE
Sbjct: 724 VLEVDVARKRVALTMRLNDAAE 745
[47][TOP]
>UniRef100_Q3A645 Transcriptional accessory protein n=1 Tax=Pelobacter carbinolicus
DSM 2380 RepID=Q3A645_PELCD
Length = 759
Score = 82.4 bits (202), Expect = 1e-14
Identities = 52/124 (41%), Positives = 67/124 (54%)
Frame = +1
Query: 34 RPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGA 213
+P R P RRQ R VR ++ D+KEG GTVT V FGA
Sbjct: 622 KPGRDP--RRQFETVSFRDDVR---------------EISDLKEGMILSGTVTNVAAFGA 664
Query: 214 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAE 393
FV+ G + +GLVH+S LA F K+ +VV+ G V VKVLSVDA +KR+ L +K A
Sbjct: 665 FVDIGVHQDGLVHVSHLAHRFVKDPGEVVRVGDIVKVKVLSVDAARKRIGLSIKEAQPEP 724
Query: 394 ASAE 405
SA+
Sbjct: 725 DSAQ 728
[48][TOP]
>UniRef100_B9JAJ3 RNA-binding domain S1-containing transcriptional regulator n=1
Tax=Agrobacterium radiobacter K84 RepID=B9JAJ3_AGRRK
Length = 769
Score = 82.4 bits (202), Expect = 1e-14
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ ++V+ G V V
Sbjct: 643 EISDLKPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEIVKAGDVVKV 702
Query: 325 KVLSVDAEKKRVSLELKSAVAAEAS 399
KV+ VDA++KR+SL ++ AEA+
Sbjct: 703 KVVDVDAKRKRISLTMRKDGGAEAA 727
[49][TOP]
>UniRef100_B5E861 RNA binding S1 domain protein n=1 Tax=Geobacter bemidjiensis Bem
RepID=B5E861_GEOBB
Length = 754
Score = 82.4 bits (202), Expect = 1e-14
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+ + D+KEG +G VT V FGAFV+ G + +GLVH+S+L+ FTK+ D V+ G+ V
Sbjct: 639 VTIADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKVGEIVK 698
Query: 322 VKVLSVDAEKKRVSLELKSAVAAEA 396
VK+LS D E+KR+SL +K A +A
Sbjct: 699 VKLLSADPERKRISLSIKQAEPEKA 723
[50][TOP]
>UniRef100_A9BZV4 RNA binding S1 domain protein n=1 Tax=Delftia acidovorans SPH-1
RepID=A9BZV4_DELAS
Length = 786
Score = 82.4 bits (202), Expect = 1e-14
Identities = 38/76 (50%), Positives = 58/76 (76%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+++ F ++A++VV+ GQ V VK
Sbjct: 658 IKDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVK 717
Query: 328 VLSVDAEKKRVSLELK 375
VL VD +KR+SL +K
Sbjct: 718 VLEVDVARKRISLTMK 733
[51][TOP]
>UniRef100_C7MX99 Transcriptional accessory protein n=1 Tax=Saccharomonospora viridis
DSM 43017 RepID=C7MX99_SACVD
Length = 775
Score = 82.4 bits (202), Expect = 1e-14
Identities = 39/76 (51%), Positives = 53/76 (69%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
LED+K G EG VT V FGAFV+ G + +GLVH+S ++ + + +DVV+PG VTVK
Sbjct: 641 LEDLKPGMRLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHRYVSDPRDVVKPGDVVTVK 700
Query: 328 VLSVDAEKKRVSLELK 375
VL VD +KR+SL L+
Sbjct: 701 VLDVDVPRKRISLTLR 716
[52][TOP]
>UniRef100_C5T4L5 RNA binding S1 domain protein n=1 Tax=Acidovorax delafieldii 2AN
RepID=C5T4L5_ACIDE
Length = 789
Score = 82.4 bits (202), Expect = 1e-14
Identities = 38/76 (50%), Positives = 56/76 (73%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+LA F +A++VV+ G V VK
Sbjct: 658 IKDLKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVNDAREVVKTGDIVKVK 717
Query: 328 VLSVDAEKKRVSLELK 375
V+ VD E+KR+ L +K
Sbjct: 718 VMEVDVERKRIGLSMK 733
[53][TOP]
>UniRef100_Q45388 Protein tex n=1 Tax=Bordetella pertussis RepID=TEX_BORPE
Length = 791
Score = 82.4 bits (202), Expect = 1e-14
Identities = 44/82 (53%), Positives = 55/82 (67%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L D+ G EG VT V FGAFV+ G + +GLVHIS LA F K+ +DVV+ GQ VTVK
Sbjct: 664 LNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVK 723
Query: 328 VLSVDAEKKRVSLELKSAVAAE 393
VL VD +KRV+L ++ AAE
Sbjct: 724 VLEVDVARKRVALTMRLNDAAE 745
[54][TOP]
>UniRef100_Q2JGI6 RNA binding S1 n=1 Tax=Frankia sp. CcI3 RepID=Q2JGI6_FRASC
Length = 864
Score = 82.0 bits (201), Expect = 2e-14
Identities = 51/121 (42%), Positives = 66/121 (54%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP+ R A E A D+ G EGTVT V FGAFV+ G + +GLVH+S +
Sbjct: 641 RPAFRTAAFTEGIETLA------DLVPGMTLEGTVTNVAAFGAFVDIGVHQDGLVHVSAM 694
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 444
+ F + ++VV+PG VTVKVL VD +KR+SL L+ A A D E DR G
Sbjct: 695 SKNFVSDPREVVKPGDIVTVKVLDVDIPRKRISLTLRLDDEAGAGGPGRRD--GEGDRRG 752
Query: 445 A 447
A
Sbjct: 753 A 753
[55][TOP]
>UniRef100_B8FHU3 RNA binding S1 domain protein n=1 Tax=Desulfatibacillum
alkenivorans AK-01 RepID=B8FHU3_DESAA
Length = 752
Score = 82.0 bits (201), Expect = 2e-14
Identities = 39/80 (48%), Positives = 56/80 (70%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
+++D++ G E G VT V FGAFV+ G + +GLVHIS+L+ GF KN DVV+ Q+V V
Sbjct: 633 EMKDLEPGMELPGIVTNVTNFGAFVDVGVHQDGLVHISQLSDGFVKNPADVVKVQQRVKV 692
Query: 325 KVLSVDAEKKRVSLELKSAV 384
+VL VD +KR+SL +K +
Sbjct: 693 RVLEVDLPRKRISLSMKKKI 712
[56][TOP]
>UniRef100_A9NHV1 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Acholeplasma laidlawii PG-8A
RepID=A9NHV1_ACHLI
Length = 724
Score = 82.0 bits (201), Expect = 2e-14
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+ +ED+K G E EGTV V +FGAFV+ G +GLVHISKL++ F K+ KDVV GQ VT
Sbjct: 643 LSIEDLKVGMELEGTVRNVTDFGAFVDVGLKNDGLVHISKLSNKFVKHPKDVVSVGQIVT 702
Query: 322 VKVLSVDAEKKRVSLEL 372
V VL++D +K +V L +
Sbjct: 703 VWVLNIDRDKGQVGLTM 719
[57][TOP]
>UniRef100_A7Z1N2 YdcI n=1 Tax=Bacillus amyloliquefaciens FZB42 RepID=A7Z1N2_BACA2
Length = 719
Score = 82.0 bits (201), Expect = 2e-14
Identities = 44/88 (50%), Positives = 56/88 (63%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P ++LED+KEG E +GTV V +FGAFV+ G +GLVHISKL++ F K+
Sbjct: 630 EVPKPLLKKDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHP 689
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
DVV G VTV V VD +K RVSL +
Sbjct: 690 LDVVSVGDIVTVWVEGVDVQKGRVSLSM 717
[58][TOP]
>UniRef100_C7ICV4 RNA binding S1 domain protein n=1 Tax=Clostridium papyrosolvens DSM
2782 RepID=C7ICV4_9CLOT
Length = 718
Score = 82.0 bits (201), Expect = 2e-14
Identities = 42/89 (47%), Positives = 56/89 (62%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P + + +ED+K G GTV V +FGAFV+ G + +GLVHIS+LA F KN
Sbjct: 627 ELPKPMLHSDVLNMEDLKAGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKFVKNP 686
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
DVV G V VKV+ VD E+KR+SL ++
Sbjct: 687 MDVVAVGDIVKVKVIEVDVERKRISLTMR 715
[59][TOP]
>UniRef100_B8HDI0 RNA binding S1 domain protein n=1 Tax=Arthrobacter chlorophenolicus
A6 RepID=B8HDI0_ARTCA
Length = 830
Score = 81.6 bits (200), Expect = 2e-14
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+K G EGTVT V FGAFV+ G + +GLVH+S LA+ F + ++VV+ GQ V V
Sbjct: 656 KISDLKPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSGQVVRV 715
Query: 325 KVLSVDAEKKRVSLELK 375
KVL D E+KR+SL L+
Sbjct: 716 KVLEADPERKRISLTLR 732
[60][TOP]
>UniRef100_A5G3R7 RNA binding S1 domain protein n=1 Tax=Geobacter uraniireducens Rf4
RepID=A5G3R7_GEOUR
Length = 757
Score = 81.6 bits (200), Expect = 2e-14
Identities = 41/82 (50%), Positives = 57/82 (69%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
+L D++EG +GTVT V FGAFV+ G + +GLVH+S LA F K+ + V+ GQ V V
Sbjct: 642 ELGDLQEGMILQGTVTNVTAFGAFVDIGVHQDGLVHVSHLAQRFVKDPNEAVKVGQIVKV 701
Query: 325 KVLSVDAEKKRVSLELKSAVAA 390
KVLSVD ++KR++L +K A A
Sbjct: 702 KVLSVDLQRKRIALSIKEAEPA 723
[61][TOP]
>UniRef100_C1Z9K3 Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) n=1 Tax=Planctomyces limnophilus DSM 3776
RepID=C1Z9K3_PLALI
Length = 568
Score = 81.6 bits (200), Expect = 2e-14
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = +1
Query: 151 EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKV 330
E++K G Y GTV+++++FGAF+ +GL HIS+L+ GF KN +VVQ G+K+ VKV
Sbjct: 482 EEIKVGRVYNGTVSSIKDFGAFIEIAPGKDGLCHISELSDGFVKNVNEVVQVGEKIQVKV 541
Query: 331 LSVDAEKKRVSLELKSAVAAEA 396
+++D E+ RV L K+ +A EA
Sbjct: 542 IAID-EQNRVKLSRKAVLADEA 562
[62][TOP]
>UniRef100_B5HSU4 Transcriptional accessory protein n=1 Tax=Streptomyces sviceus ATCC
29083 RepID=B5HSU4_9ACTO
Length = 788
Score = 81.6 bits (200), Expect = 2e-14
Identities = 44/100 (44%), Positives = 61/100 (61%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+ G EG VT V FGAF++ G + +GL H+S L+ F K+ +DVV+PG V V
Sbjct: 652 KISDLSAGMVLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKTFVKDPRDVVKPGDIVKV 711
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 444
KVL VD +KR+SL L+ + EA A+ S +P R G
Sbjct: 712 KVLDVDIPRKRISLTLR--LDDEAQAKPSGGERRQPQRGG 749
[63][TOP]
>UniRef100_A6CTJ1 YdcI n=1 Tax=Bacillus sp. SG-1 RepID=A6CTJ1_9BACI
Length = 717
Score = 81.6 bits (200), Expect = 2e-14
Identities = 46/97 (47%), Positives = 58/97 (59%)
Frame = +1
Query: 82 VRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISK 261
VRP + E A +KLED++ G E +GTV V +FGAFV+ G +GLVHISK
Sbjct: 618 VRPGRDLRDELSAPLLKKDVLKLEDLQPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISK 677
Query: 262 LASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
L GF K+ DVV G VTV V S D +K RV+L +
Sbjct: 678 LRKGFVKHPLDVVSVGDVVTVWVESADVKKGRVALSM 714
[64][TOP]
>UniRef100_UPI0001B54FC8 RNA-binding S1 domain-containing protein n=1 Tax=Streptomyces sp.
AA4 RepID=UPI0001B54FC8
Length = 788
Score = 81.3 bits (199), Expect = 3e-14
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+K G EG VT V FGAF++ G + +GL H+S L+ F K+ +DVV+PG V V
Sbjct: 650 KIADLKPGMRLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKNFVKDPRDVVKPGDIVKV 709
Query: 325 KVLSVDAEKKRVSLELK 375
KVL VD +KR+SL L+
Sbjct: 710 KVLDVDVPRKRISLTLR 726
[65][TOP]
>UniRef100_UPI0001788115 Tex-like protein protein-like protein n=1 Tax=Geobacillus sp.
Y412MC10 RepID=UPI0001788115
Length = 740
Score = 81.3 bits (199), Expect = 3e-14
Identities = 44/97 (45%), Positives = 59/97 (60%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP E P +K+ED+ G E +GTV V +FGAFV+ G ++GLVHIS+L
Sbjct: 636 RPGRDPREELPLPIFRQDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQL 695
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
+ GF K+ DVV G VTV VL+VD +K RV L ++
Sbjct: 696 SDGFVKHPMDVVSVGDNVTVWVLNVDLKKGRVGLTMR 732
[66][TOP]
>UniRef100_Q82MJ1 Putative transcription accessory protein n=1 Tax=Streptomyces
avermitilis RepID=Q82MJ1_STRAW
Length = 810
Score = 81.3 bits (199), Expect = 3e-14
Identities = 41/90 (45%), Positives = 56/90 (62%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V
Sbjct: 648 KISDLASGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKV 707
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESD 414
KVL +D +KR+SL L+ A AS D
Sbjct: 708 KVLDIDIPRKRISLTLRLDDEAAASEGRQD 737
[67][TOP]
>UniRef100_A9F254 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So
ce 56' RepID=A9F254_SORC5
Length = 788
Score = 81.3 bits (199), Expect = 3e-14
Identities = 41/105 (39%), Positives = 61/105 (58%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
+ED+K G E EG VT V FGAFV+ G + +GLVH+S+LA F K+ +V + G+K+ V+
Sbjct: 653 MEDLKPGMELEGVVTNVTAFGAFVDIGVHQDGLVHVSQLADRFVKDPNEVAKVGEKIKVR 712
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDD 462
VL +D +KR+SL K A + ++ D G + D
Sbjct: 713 VLEIDLVRKRISLTAKKGGAPAGARPQAGGPSAGGDARGRNDRGD 757
[68][TOP]
>UniRef100_A8FA76 RNA binding transcriptional accessory protein n=1 Tax=Bacillus
pumilus SAFR-032 RepID=A8FA76_BACP2
Length = 719
Score = 81.3 bits (199), Expect = 3e-14
Identities = 44/88 (50%), Positives = 56/88 (63%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P +KLED+K+G E +GTV V +FGAFV+ G +GLVHISKL++ F K+
Sbjct: 628 EVPKPLLKTDVLKLEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNRFVKHP 687
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
DVV G VTV V SVD K RV+L +
Sbjct: 688 LDVVSVGDIVTVWVDSVDQAKGRVALSM 715
[69][TOP]
>UniRef100_A1W6M2 RNA binding S1 domain protein n=1 Tax=Acidovorax sp. JS42
RepID=A1W6M2_ACISJ
Length = 798
Score = 81.3 bits (199), Expect = 3e-14
Identities = 38/76 (50%), Positives = 57/76 (75%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
+ D++EG EGTV+ V +FGAFV+ G + +GLVH+S+L+ F ++A++VV+ G V VK
Sbjct: 673 IADLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREVVKTGDIVKVK 732
Query: 328 VLSVDAEKKRVSLELK 375
VL VDA +KR+SL +K
Sbjct: 733 VLEVDAARKRISLSMK 748
[70][TOP]
>UniRef100_D0C0W2 Transcriptional accessory protein n=1 Tax=Acinetobacter sp. RUH2624
RepID=D0C0W2_9GAMM
Length = 795
Score = 81.3 bits (199), Expect = 3e-14
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V
Sbjct: 647 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAE 405
+V+ VDAE+ RV+L +++ AA A+
Sbjct: 707 RVMQVDAERNRVNLSMRAEGAAPVKAQ 733
[71][TOP]
>UniRef100_B4AIJ4 Protein YhgF n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AIJ4_BACPU
Length = 719
Score = 81.3 bits (199), Expect = 3e-14
Identities = 44/88 (50%), Positives = 56/88 (63%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P +KLED+K+G E +GTV V +FGAFV+ G +GLVHISKL++ F K+
Sbjct: 628 EVPKPLLKTDVLKLEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNRFVKHP 687
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
DVV G VTV V SVD K RV+L +
Sbjct: 688 LDVVSVGDIVTVWVDSVDQAKGRVALSM 715
[72][TOP]
>UniRef100_A8W0E6 Stage II sporulation E family protein n=1 Tax=Bacillus
selenitireducens MLS10 RepID=A8W0E6_9BACI
Length = 724
Score = 81.3 bits (199), Expect = 3e-14
Identities = 40/77 (51%), Positives = 53/77 (68%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+++ED+++G E EGTV V +FGAFV+ G +GLVH+SKL GF KN DVV G VT
Sbjct: 643 LQMEDLEKGMELEGTVRNVVDFGAFVDIGVKQDGLVHVSKLRKGFVKNPMDVVNVGDVVT 702
Query: 322 VKVLSVDAEKKRVSLEL 372
V V SVD K R++L +
Sbjct: 703 VWVDSVDVHKGRIALTM 719
[73][TOP]
>UniRef100_UPI0001BB916D conserved hypothetical protein n=1 Tax=Acinetobacter johnsonii
SH046 RepID=UPI0001BB916D
Length = 788
Score = 80.9 bits (198), Expect = 4e-14
Identities = 44/105 (41%), Positives = 65/105 (61%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V
Sbjct: 640 EVAQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVADPHKVVKPGQIVQV 699
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATD 459
+VL+VDAE+ RV+L ++ A A A +P RE + ++
Sbjct: 700 RVLTVDAERNRVNLSMRPEGAEAAKAPR------QPRRENTERSE 738
[74][TOP]
>UniRef100_Q7W5T7 Transcription accessory protein n=1 Tax=Bordetella parapertussis
RepID=Q7W5T7_BORPA
Length = 791
Score = 80.9 bits (198), Expect = 4e-14
Identities = 43/82 (52%), Positives = 54/82 (65%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L D+ G EG VT V FGAFV+ G + +GLVHIS LA F K+ +DVV+ GQ VTVK
Sbjct: 664 LNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVK 723
Query: 328 VLSVDAEKKRVSLELKSAVAAE 393
VL VD +KRV+L ++ AE
Sbjct: 724 VLEVDVARKRVALTMRLNDTAE 745
[75][TOP]
>UniRef100_Q6MPA5 Putative RNA binding protein with S1 RNA-binding domain n=1
Tax=Bdellovibrio bacteriovorus RepID=Q6MPA5_BDEBA
Length = 780
Score = 80.9 bits (198), Expect = 4e-14
Identities = 45/102 (44%), Positives = 61/102 (59%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
++++D+ EG G VT V FGAFV+ G + +GLVHIS L+ F + + VV PG VT
Sbjct: 641 MEVKDLTEGMICPGIVTNVTNFGAFVDIGVHQDGLVHISALSHKFVDDPRKVVNPGDHVT 700
Query: 322 VKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGA 447
VKVL VD K ++SL +K A EASA + P+ GA
Sbjct: 701 VKVLKVDVVKNQISLTMKMDDAPEASAPRGE---RRPENRGA 739
[76][TOP]
>UniRef100_Q6F7B6 Putative uncharacterized protein n=1 Tax=Acinetobacter sp. ADP1
RepID=Q6F7B6_ACIAD
Length = 796
Score = 80.9 bits (198), Expect = 4e-14
Identities = 42/87 (48%), Positives = 60/87 (68%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V
Sbjct: 647 EIAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAE 405
+V+ VDAE+KRV+L ++ AEA A+
Sbjct: 707 RVIQVDAERKRVNLSMRPE-GAEAPAK 732
[77][TOP]
>UniRef100_B9MA81 Resolvase RNase H domain protein n=1 Tax=Diaphorobacter sp. TPSY
RepID=B9MA81_DIAST
Length = 798
Score = 80.9 bits (198), Expect = 4e-14
Identities = 38/76 (50%), Positives = 56/76 (73%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
+ D++EG EGTV+ V +FGAFV+ G + +GLVH+S+L+ F +A++VV+ G V VK
Sbjct: 673 IADLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 732
Query: 328 VLSVDAEKKRVSLELK 375
VL VDA +KR+SL +K
Sbjct: 733 VLEVDAARKRISLSMK 748
[78][TOP]
>UniRef100_B2IGR3 RNA binding S1 domain protein n=1 Tax=Beijerinckia indica subsp.
indica ATCC 9039 RepID=B2IGR3_BEII9
Length = 766
Score = 80.9 bits (198), Expect = 4e-14
Identities = 39/85 (45%), Positives = 57/85 (67%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++D+K G EGTVT V FGAFV+ G + +GLVHIS+LA F K D+V+ G V V+
Sbjct: 645 IKDLKPGMTLEGTVTNVTNFGAFVDIGVHQDGLVHISQLADRFVKEPNDLVKAGDVVKVR 704
Query: 328 VLSVDAEKKRVSLELKSAVAAEASA 402
V+ VD ++KR++L +++ A SA
Sbjct: 705 VVEVDVKRKRIALSMRTQEATPQSA 729
[79][TOP]
>UniRef100_A8ZSR0 RNA binding S1 domain protein n=1 Tax=Desulfococcus oleovorans Hxd3
RepID=A8ZSR0_DESOH
Length = 759
Score = 80.9 bits (198), Expect = 4e-14
Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++DV+ G + G VT + FGAFV+ G + +GLVHIS++A F K+ D+V+ Q+V V
Sbjct: 629 IDDVQPGMKLPGIVTNITAFGAFVDIGVHQDGLVHISQMADRFVKSPADIVKVQQRVMVT 688
Query: 328 VLSVDAEKKRVSLELKS-AVAAEASAEESDDIITEPDREG 444
VL VD E+KR+SL +K+ A A+ EE+ PD G
Sbjct: 689 VLEVDKERKRISLSMKAERPAPTAAREETAGPSPRPDTPG 728
[80][TOP]
>UniRef100_C7PIE5 RNA binding S1 domain protein n=1 Tax=Chitinophaga pinensis DSM
2588 RepID=C7PIE5_CHIPD
Length = 760
Score = 80.9 bits (198), Expect = 4e-14
Identities = 45/106 (42%), Positives = 60/106 (56%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
+PS E E A K+ED+K G G VT + FGAFV+ G +GLVHIS L
Sbjct: 610 KPSRDPRDEIAIFEYAEGIHKMEDLKVGMTLPGVVTNITNFGAFVDIGVKQDGLVHISHL 669
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASA 402
++ F N + V+ QKVTV VL VD +KR+SL +K A +A +
Sbjct: 670 SNRFISNPNEAVKLNQKVTVTVLEVDPSRKRISLSMKDNEAPQAGS 715
[81][TOP]
>UniRef100_B4VGY9 S1 RNA binding domain protein n=1 Tax=Microcoleus chthonoplastes
PCC 7420 RepID=B4VGY9_9CYAN
Length = 718
Score = 80.9 bits (198), Expect = 4e-14
Identities = 39/79 (49%), Positives = 56/79 (70%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G E EG VT V FGAFV+ G + +GLVHIS+LA F + K++V+ GQ V V
Sbjct: 637 EMSDLKVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKEIVKVGQVVNV 696
Query: 325 KVLSVDAEKKRVSLELKSA 381
+VLSVD + KR+ L +++A
Sbjct: 697 RVLSVDEKLKRIGLSMRAA 715
[82][TOP]
>UniRef100_B0MH09 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
14662 RepID=B0MH09_9FIRM
Length = 713
Score = 80.9 bits (198), Expect = 4e-14
Identities = 39/80 (48%), Positives = 57/80 (71%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+++ED+KEG + +GTV V +FGAFV+ G + +GLVHIS++A F K+ +VV G V
Sbjct: 634 MEMEDLKEGMKLKGTVRNVIDFGAFVDIGVHQDGLVHISQMADRFVKHPLEVVSVGDVVD 693
Query: 322 VKVLSVDAEKKRVSLELKSA 381
V VLSVD EKKR+ L ++ +
Sbjct: 694 VTVLSVDLEKKRIQLSMRKS 713
[83][TOP]
>UniRef100_O31489 Uncharacterized protein ydcI n=1 Tax=Bacillus subtilis
RepID=YDCI_BACSU
Length = 719
Score = 80.9 bits (198), Expect = 4e-14
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
++LED+KEG E +GTV V +FGAFV+ G +GLVHISKL++ F K+ DVV G VT
Sbjct: 641 LQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVT 700
Query: 322 VKVLSVDAEKKRVSLEL 372
V V VD +K RVSL +
Sbjct: 701 VWVDGVDVQKGRVSLSM 717
[84][TOP]
>UniRef100_UPI000196798C hypothetical protein SUBVAR_02860 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI000196798C
Length = 719
Score = 80.5 bits (197), Expect = 5e-14
Identities = 42/97 (43%), Positives = 62/97 (63%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
+P V P + + LED+K G E GTV V +FGAFV+ G + +GLVHIS++
Sbjct: 621 KPGRDVRDSLPKPLLRSDVMSLEDLKPGMELTGTVRNVIDFGAFVDLGVHQDGLVHISQI 680
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
++ F K+ ++V++ G V VKVLSVD KKR++L +K
Sbjct: 681 SNRFIKHPREVLKVGDIVKVKVLSVDVAKKRIALTMK 717
[85][TOP]
>UniRef100_B8IV07 RNA binding S1 domain protein n=1 Tax=Methylobacterium nodulans ORS
2060 RepID=B8IV07_METNO
Length = 769
Score = 80.5 bits (197), Expect = 5e-14
Identities = 47/104 (45%), Positives = 61/104 (58%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RPS R E A D+K G EG VT V FGAFV+ G + +GLVHIS L
Sbjct: 630 RPSFRTATFREGVETIA------DLKPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHISAL 683
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEA 396
++ F K+ ++VV+PG V VKVL VD +KR+SL ++ AA A
Sbjct: 684 SNSFVKDPRNVVKPGDVVKVKVLDVDVPRKRISLTMRLDDAAGA 727
[86][TOP]
>UniRef100_B5ZS43 RNA binding S1 domain protein n=1 Tax=Rhizobium leguminosarum bv.
trifolii WSM2304 RepID=B5ZS43_RHILW
Length = 769
Score = 80.5 bits (197), Expect = 5e-14
Identities = 44/110 (40%), Positives = 64/110 (58%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RPS + A A + + D+K G EGTVT V FGAFV+ G + +GLVH+S+L
Sbjct: 629 RPSFKTAAFAEGVNE------ISDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQL 682
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESD 414
A F K+ +VV+ G V V+V+ VDA++KR++L +K + A D
Sbjct: 683 ADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMKRDDGSAAPPPRGD 732
[87][TOP]
>UniRef100_A9IIW4 Transcription accessory protein n=1 Tax=Bordetella petrii DSM 12804
RepID=A9IIW4_BORPD
Length = 791
Score = 80.5 bits (197), Expect = 5e-14
Identities = 41/76 (53%), Positives = 52/76 (68%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L D+ G EG VT V FGAFV+ G + +GLVHIS LA F K+ +DVV+ GQ VTVK
Sbjct: 664 LNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVK 723
Query: 328 VLSVDAEKKRVSLELK 375
VL VD +KRV+L ++
Sbjct: 724 VLEVDVARKRVALTMR 739
[88][TOP]
>UniRef100_Q6SGM3 S1 RNA binding domain protein n=1 Tax=uncultured marine bacterium
463 RepID=Q6SGM3_9BACT
Length = 772
Score = 80.5 bits (197), Expect = 5e-14
Identities = 40/88 (45%), Positives = 57/88 (64%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D++ EGTVT V FGAF++ G + +GLVHIS LA F K+ +DVV+ G V V
Sbjct: 644 KISDLRPDMVLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRV 703
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEE 408
KV+ VDA +KR+ L ++ + A AE+
Sbjct: 704 KVMEVDAPRKRIGLSMRLSDKAGEQAEK 731
[89][TOP]
>UniRef100_C1P9H9 RNA binding S1 domain protein n=1 Tax=Bacillus coagulans 36D1
RepID=C1P9H9_BACCO
Length = 725
Score = 80.5 bits (197), Expect = 5e-14
Identities = 41/77 (53%), Positives = 53/77 (68%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E +GTV V +FGAFV+ G +GLVHISKL+ GF K+ D+V G VT
Sbjct: 645 MKLEDLKPGMEMQGTVRNVVDFGAFVDVGVKEDGLVHISKLSKGFVKHPLDIVSVGDIVT 704
Query: 322 VKVLSVDAEKKRVSLEL 372
V V VD +K R+SL +
Sbjct: 705 VWVEKVDVQKGRLSLTM 721
[90][TOP]
>UniRef100_B7RVW5 S1 RNA binding domain protein n=1 Tax=marine gamma proteobacterium
HTCC2148 RepID=B7RVW5_9GAMM
Length = 772
Score = 80.5 bits (197), Expect = 5e-14
Identities = 40/88 (45%), Positives = 57/88 (64%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D++ EGTVT V FGAF++ G + +GLVHIS LA F K+ +DVV+ G V V
Sbjct: 644 KISDLRPDMVLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRV 703
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEE 408
KV+ VDA +KR+ L ++ + A AE+
Sbjct: 704 KVMEVDAPRKRIGLSMRLSDKAGEQAEK 731
[91][TOP]
>UniRef100_UPI0001B4D0A3 transcriptional accessory protein n=1 Tax=Streptomyces lividans
TK24 RepID=UPI0001B4D0A3
Length = 780
Score = 80.1 bits (196), Expect = 7e-14
Identities = 41/99 (41%), Positives = 58/99 (58%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V
Sbjct: 646 KISDLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKV 705
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDRE 441
KV+ VD +KR+SL L+ A E + P R+
Sbjct: 706 KVMDVDIPRKRISLTLRLDDEAAPQGEPKKERGARPPRQ 744
[92][TOP]
>UniRef100_UPI0001AEF256 transcription accessory protein n=1 Tax=Streptomyces ghanaensis
ATCC 14672 RepID=UPI0001AEF256
Length = 792
Score = 80.1 bits (196), Expect = 7e-14
Identities = 43/97 (44%), Positives = 58/97 (59%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP+ R A E K+ D+ G EG VT V FGAFV+ G + +GLVH+S +
Sbjct: 631 RPAFRTAAFKEGVE------KISDLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAM 684
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
+ F K+ +DVV+PG V VKVL VD +KR+SL L+
Sbjct: 685 SKTFVKDPRDVVKPGDIVKVKVLDVDIPRKRISLTLR 721
[93][TOP]
>UniRef100_UPI0001AEDDFE transcriptional accessory protein n=1 Tax=Streptomyces albus J1074
RepID=UPI0001AEDDFE
Length = 807
Score = 80.1 bits (196), Expect = 7e-14
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
KL D++ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ ++VV+PG V V
Sbjct: 648 KLSDLEAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRNFVKDPREVVKPGDIVKV 707
Query: 325 KVLSVDAEKKRVSLELK 375
KV+ VDA +KR+SL L+
Sbjct: 708 KVMEVDAARKRISLTLR 724
[94][TOP]
>UniRef100_UPI00005DC0B2 emb2726 (embryo defective 2726); RNA binding / translation
elongation factor n=1 Tax=Arabidopsis thaliana
RepID=UPI00005DC0B2
Length = 709
Score = 80.1 bits (196), Expect = 7e-14
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 24/144 (16%)
Frame = +1
Query: 16 HGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE-----------APAAEQAAK------- 138
HGR VL P R G VA + S V AE APA ++
Sbjct: 62 HGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGR 121
Query: 139 -----AIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQ 303
A+K E++ G+ + G V ++ FGAFV+FGA T+GLVH+S+L+ F K+ VV
Sbjct: 122 KSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVT 181
Query: 304 PGQKVTVKVLSVDAEKKRVSLELK 375
GQ+V V+++ D E KR+SL ++
Sbjct: 182 IGQEVKVRLVEADIESKRISLTMR 205
[95][TOP]
>UniRef100_Q9X7P9 Putative transcriptional accessory protein n=1 Tax=Streptomyces
coelicolor RepID=Q9X7P9_STRCO
Length = 780
Score = 80.1 bits (196), Expect = 7e-14
Identities = 41/99 (41%), Positives = 58/99 (58%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V
Sbjct: 646 KISDLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKV 705
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDRE 441
KV+ VD +KR+SL L+ A E + P R+
Sbjct: 706 KVMDVDIPRKRISLTLRLDDEAAPQGEPKKERGARPPRQ 744
[96][TOP]
>UniRef100_Q11LK4 RNA binding S1 n=1 Tax=Chelativorans sp. BNC1 RepID=Q11LK4_MESSB
Length = 772
Score = 80.1 bits (196), Expect = 7e-14
Identities = 38/77 (49%), Positives = 56/77 (72%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++D+K G EGTVT V FGAFV+ G + +GLVH+S+LA+ F K+A +VV+ G V V+
Sbjct: 644 IKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLANRFVKDAHEVVKAGDVVKVR 703
Query: 328 VLSVDAEKKRVSLELKS 378
VL VD ++ R+SL ++S
Sbjct: 704 VLEVDIKRNRISLSMRS 720
[97][TOP]
>UniRef100_Q03E21 Transcriptional accessory protein n=1 Tax=Pediococcus pentosaceus
ATCC 25745 RepID=Q03E21_PEDPA
Length = 722
Score = 80.1 bits (196), Expect = 7e-14
Identities = 43/88 (48%), Positives = 53/88 (60%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E PA + + LED+K G E +GTV V +FGAFV+ G +GLVHISKL GF K
Sbjct: 631 EMPAPLLRSDVLTLEDLKPGMELQGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKQP 690
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
DVV G V V V SVD E+ R+ L +
Sbjct: 691 SDVVAVGDIVKVWVESVDVERHRIQLTM 718
[98][TOP]
>UniRef100_C6B3G7 RNA binding S1 domain protein n=1 Tax=Rhizobium leguminosarum bv.
trifolii WSM1325 RepID=C6B3G7_RHILS
Length = 769
Score = 80.1 bits (196), Expect = 7e-14
Identities = 40/98 (40%), Positives = 60/98 (61%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 643 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDR 438
+V+ VDA++KR++L +K + A D + R
Sbjct: 703 RVVEVDAKRKRIALSMKRDDGSSAPPPRGDSRANQGSR 740
[99][TOP]
>UniRef100_A0JTC3 RNA binding S1 domain protein n=1 Tax=Arthrobacter sp. FB24
RepID=A0JTC3_ARTS2
Length = 861
Score = 80.1 bits (196), Expect = 7e-14
Identities = 39/77 (50%), Positives = 54/77 (70%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D++ G EGTVT V FGAFV+ G + +GLVH+S LA+ F + ++VV+ GQ V V
Sbjct: 685 KISDLRPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSGQVVRV 744
Query: 325 KVLSVDAEKKRVSLELK 375
KVL D E+KR+SL L+
Sbjct: 745 KVLEADPERKRISLTLR 761
[100][TOP]
>UniRef100_Q2B4Z6 Transcription accessory protein (S1 RNA binding domain) n=1
Tax=Bacillus sp. NRRL B-14911 RepID=Q2B4Z6_9BACI
Length = 723
Score = 80.1 bits (196), Expect = 7e-14
Identities = 42/79 (53%), Positives = 54/79 (68%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E +GTV V +FGAFV+ G +GLVHISKL F K+ DVV G VT
Sbjct: 643 LKLEDLKPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLRKQFVKHPLDVVSVGDVVT 702
Query: 322 VKVLSVDAEKKRVSLELKS 378
V V S+D++K RV+L + S
Sbjct: 703 VWVDSIDSQKGRVALTMLS 721
[101][TOP]
>UniRef100_Q0EXI2 Probable transcriptional accessory protein n=1 Tax=Mariprofundus
ferrooxydans PV-1 RepID=Q0EXI2_9PROT
Length = 825
Score = 80.1 bits (196), Expect = 7e-14
Identities = 42/96 (43%), Positives = 59/96 (61%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
+L D++EG EG VT V FGAFV+ G + +GLVHIS L F + + VV+ G+ V V
Sbjct: 657 ELRDLREGMILEGVVTNVANFGAFVDIGVHQDGLVHISALTHQFIDDPRKVVKTGEVVQV 716
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEP 432
KVL VDA +KR+SL ++ A AE+ + +P
Sbjct: 717 KVLEVDARRKRISLTMRMDDVPGAKAEKPEAAAAKP 752
[102][TOP]
>UniRef100_C9AW24 RNA binding protein S1 n=2 Tax=Enterococcus casseliflavus
RepID=C9AW24_ENTCA
Length = 728
Score = 80.1 bits (196), Expect = 7e-14
Identities = 41/88 (46%), Positives = 55/88 (62%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E PA + +ED+K G E +GTV V +FGAFV+ G +GLVH+SKL+ F K+
Sbjct: 634 EMPAPLLRKDVLSMEDLKPGMELKGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHP 693
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
KDVV G VTV + VD +K R+SL +
Sbjct: 694 KDVVSVGDVVTVWIEQVDVKKGRISLTM 721
[103][TOP]
>UniRef100_C9A7Y3 RNA binding protein S1 n=1 Tax=Enterococcus casseliflavus EC20
RepID=C9A7Y3_ENTCA
Length = 728
Score = 80.1 bits (196), Expect = 7e-14
Identities = 41/88 (46%), Positives = 55/88 (62%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E PA + +ED+K G E +GTV V +FGAFV+ G +GLVH+SKL+ F K+
Sbjct: 634 EMPAPLLRKDVLSMEDLKPGMELKGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHP 693
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
KDVV G VTV + VD +K R+SL +
Sbjct: 694 KDVVSVGDVVTVWIEQVDVKKGRISLTM 721
[104][TOP]
>UniRef100_C7QJM7 RNA binding S1 domain protein n=1 Tax=Catenulispora acidiphila DSM
44928 RepID=C7QJM7_CATAD
Length = 838
Score = 80.1 bits (196), Expect = 7e-14
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D++ G EG VT V FGAFV+ G + +GLVHIS L+ F K+ +DVV+PG V V
Sbjct: 653 KIGDLQPGMILEGVVTNVAAFGAFVDVGVHQDGLVHISALSKTFVKDPRDVVKPGDVVRV 712
Query: 325 KVLSVDAEKKRVSLELK 375
KVL VDA +KR++L L+
Sbjct: 713 KVLDVDAVRKRIALTLR 729
[105][TOP]
>UniRef100_C6MJY8 RNA binding S1 domain protein n=1 Tax=Geobacter sp. M18
RepID=C6MJY8_9DELT
Length = 756
Score = 80.1 bits (196), Expect = 7e-14
Identities = 39/85 (45%), Positives = 57/85 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+ + D+KEG +G VT V FGAFV+ G + +GLVH+S+L+ + K+ D V+ G+ V
Sbjct: 639 VTIADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRYMKDPNDAVKVGEIVK 698
Query: 322 VKVLSVDAEKKRVSLELKSAVAAEA 396
VKVLS D E+KR+SL +K A +A
Sbjct: 699 VKVLSADPERKRISLSIKQAEPEKA 723
[106][TOP]
>UniRef100_A1ZG34 S1 RNA binding domain protein n=1 Tax=Microscilla marina ATCC 23134
RepID=A1ZG34_9SPHI
Length = 764
Score = 80.1 bits (196), Expect = 7e-14
Identities = 42/104 (40%), Positives = 63/104 (60%)
Frame = +1
Query: 106 AEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 285
A+ E A +ED+K G + G VT V +FGAFV+ G + +GLVHIS+L++ F +
Sbjct: 618 AKFEVVEFAEGVNTIEDLKTGMKLNGVVTNVTKFGAFVDIGVHQDGLVHISELSNTFVSD 677
Query: 286 AKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDD 417
+VV+ QKV V VL VD E+KR+ L +K A +A+ ++
Sbjct: 678 PNEVVKVQQKVEVMVLDVDVERKRIQLTMKGEAGAADTAKRRNN 721
[107][TOP]
>UniRef100_Q9SZD6 Elongation factor Ts n=1 Tax=Arabidopsis thaliana
RepID=Q9SZD6_ARATH
Length = 953
Score = 80.1 bits (196), Expect = 7e-14
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 24/144 (16%)
Frame = +1
Query: 16 HGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE-----------APAAEQAAK------- 138
HGR VL P R G VA + S V AE APA ++
Sbjct: 62 HGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGR 121
Query: 139 -----AIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQ 303
A+K E++ G+ + G V ++ FGAFV+FGA T+GLVH+S+L+ F K+ VV
Sbjct: 122 KSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVT 181
Query: 304 PGQKVTVKVLSVDAEKKRVSLELK 375
GQ+V V+++ D E KR+SL ++
Sbjct: 182 IGQEVKVRLVEADIESKRISLTMR 205
[108][TOP]
>UniRef100_Q93ZG6 AT4g29060/F19B15_90 n=1 Tax=Arabidopsis thaliana RepID=Q93ZG6_ARATH
Length = 455
Score = 80.1 bits (196), Expect = 7e-14
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 24/144 (16%)
Frame = +1
Query: 16 HGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE-----------APAAEQAAK------- 138
HGR VL P R G VA + S V AE APA ++
Sbjct: 62 HGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGR 121
Query: 139 -----AIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQ 303
A+K E++ G+ + G V ++ FGAFV+FGA T+GLVH+S+L+ F K+ VV
Sbjct: 122 KSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVT 181
Query: 304 PGQKVTVKVLSVDAEKKRVSLELK 375
GQ+V V+++ D E KR+SL ++
Sbjct: 182 IGQEVKVRLVEADIESKRISLTMR 205
[109][TOP]
>UniRef100_Q5QEA9 Elongation factor Ts n=1 Tax=Arabidopsis thaliana
RepID=Q5QEA9_ARATH
Length = 710
Score = 80.1 bits (196), Expect = 7e-14
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 24/144 (16%)
Frame = +1
Query: 16 HGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE-----------APAAEQAAK------- 138
HGR VL P R G VA + S V AE APA ++
Sbjct: 62 HGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGR 121
Query: 139 -----AIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQ 303
A+K E++ G+ + G V ++ FGAFV+FGA T+GLVH+S+L+ F K+ VV
Sbjct: 122 KSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVT 181
Query: 304 PGQKVTVKVLSVDAEKKRVSLELK 375
GQ+V V+++ D E KR+SL ++
Sbjct: 182 IGQEVKVRLVEADIESKRISLTMR 205
[110][TOP]
>UniRef100_Q0WVD2 Elongation factor Ts (Fragment) n=1 Tax=Arabidopsis thaliana
RepID=Q0WVD2_ARATH
Length = 631
Score = 80.1 bits (196), Expect = 7e-14
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 24/144 (16%)
Frame = +1
Query: 16 HGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE-----------APAAEQAAK------- 138
HGR VL P R G VA + S V AE APA ++
Sbjct: 62 HGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGR 121
Query: 139 -----AIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQ 303
A+K E++ G+ + G V ++ FGAFV+FGA T+GLVH+S+L+ F K+ VV
Sbjct: 122 KSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVT 181
Query: 304 PGQKVTVKVLSVDAEKKRVSLELK 375
GQ+V V+++ D E KR+SL ++
Sbjct: 182 IGQEVKVRLVEADIESKRISLTMR 205
[111][TOP]
>UniRef100_UPI0001AF29A2 putative transcription accessory protein n=1 Tax=Streptomyces
roseosporus NRRL 11379 RepID=UPI0001AF29A2
Length = 771
Score = 79.7 bits (195), Expect = 9e-14
Identities = 39/77 (50%), Positives = 53/77 (68%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
KL D++ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ +DVV+PG V V
Sbjct: 646 KLGDLEPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKPGDIVKV 705
Query: 325 KVLSVDAEKKRVSLELK 375
KV+ VD +KR+SL L+
Sbjct: 706 KVMDVDVPRKRISLTLR 722
[112][TOP]
>UniRef100_UPI00019042F2 probable transcriptional accessory protein (RNA binding S1 domain)
n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019042F2
Length = 187
Score = 79.7 bits (195), Expect = 9e-14
Identities = 40/98 (40%), Positives = 60/98 (61%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 61 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 120
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDR 438
+V+ VDA++KR++L +K + A D + R
Sbjct: 121 RVVEVDAKRKRIALSMKRDDGSAAPPPRGDSRANQGSR 158
[113][TOP]
>UniRef100_UPI00003847A9 COG2183: Transcriptional accessory protein n=1 Tax=Magnetospirillum
magnetotacticum MS-1 RepID=UPI00003847A9
Length = 784
Score = 79.7 bits (195), Expect = 9e-14
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L D+K G EG VT V FGAFV+ G + +GLVHIS LA F K+ +VV+PG V VK
Sbjct: 659 LNDLKPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVK 718
Query: 328 VLSVDAEKKRVSLELK-----SAVAAEASAEESDDIITEPDREGADATDD 462
VL VD +++R++L ++ + + E + P R+ A DD
Sbjct: 719 VLEVDLKRQRIALSMRMDAQPAPARKDEPRREDRRPASPPQRQSASKPDD 768
[114][TOP]
>UniRef100_Q5QUM6 Transcriptional accessory protein n=1 Tax=Idiomarina loihiensis
RepID=Q5QUM6_IDILO
Length = 776
Score = 79.7 bits (195), Expect = 9e-14
Identities = 41/90 (45%), Positives = 57/90 (63%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+K G EG VT V FGAF++ G + +GLVHIS LA F + ++VV+ G V V
Sbjct: 644 KVSDLKPGMLLEGVVTNVANFGAFIDVGVHQDGLVHISALADKFVSDPREVVKAGDIVKV 703
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESD 414
KVL VD E+KR+ L ++ + A A+ SD
Sbjct: 704 KVLEVDIERKRIGLTMRLSDEAPANTAGSD 733
[115][TOP]
>UniRef100_Q0AXA2 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Syntrophomonas
wolfei subsp. wolfei str. Goettingen RepID=Q0AXA2_SYNWW
Length = 687
Score = 79.7 bits (195), Expect = 9e-14
Identities = 41/100 (41%), Positives = 61/100 (61%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
I +E +EG EGTV + FGAFV A +GLVHIS+LA+ + +DVVQ +K+
Sbjct: 588 IVMEKFQEGDIIEGTVVRIAPFGAFVEIEAGVDGLVHISQLANHRVEKPEDVVQVNEKIK 647
Query: 322 VKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDRE 441
+K+LS+D E+KR+ L LK A+ + E D + + + E
Sbjct: 648 IKILSIDPEEKRIGLSLKEALNEMENQEVQDYMEKQEENE 687
Score = 59.7 bits (143), Expect = 1e-07
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +1
Query: 121 AEQAAKAIKL--EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKD 294
AE+ AK K E+++EG +G + + ++GAF++ G GL+H+S++A D
Sbjct: 494 AEEKAKQKKQFWEEIEEGQVRKGRIKRLVDYGAFIDLGGY-EGLLHVSEIAHTRIDQPSD 552
Query: 295 VVQPGQKVTVKVLSVDAEKKRVSLELK 375
V+Q G+++ V +L++D EK+RVSL K
Sbjct: 553 VLQEGEEIDVYILALDREKERVSLSRK 579
[116][TOP]
>UniRef100_C1F2W2 S1 RNA binding domain protein n=1 Tax=Acidobacterium capsulatum
ATCC 51196 RepID=C1F2W2_ACIC5
Length = 753
Score = 79.7 bits (195), Expect = 9e-14
Identities = 44/107 (41%), Positives = 65/107 (60%)
Frame = +1
Query: 112 APAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAK 291
AP+ + K I D+KEG EG VT V +FGAFV+ G + +GLVHIS+L++ F K
Sbjct: 631 APSFLEGVKEIT--DLKEGMVLEGVVTNVTKFGAFVDVGVHQDGLVHISELSNRFIKEPS 688
Query: 292 DVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEP 432
+ V+ GQ V VKVLS DA+ KR++L +++ + A + +P
Sbjct: 689 EAVKAGQIVRVKVLSADAKTKRIALSMRALMEPIGRAPSKAKPVPKP 735
[117][TOP]
>UniRef100_B2I0M7 Transcriptional accessory protein n=1 Tax=Acinetobacter baumannii
ACICU RepID=B2I0M7_ACIBC
Length = 782
Score = 79.7 bits (195), Expect = 9e-14
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V
Sbjct: 635 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 694
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAE 405
+V+ VD E+ RV+L +++ AA A+
Sbjct: 695 RVMQVDVERNRVNLSMRAEGAAPVKAQ 721
[118][TOP]
>UniRef100_B1VTW9 Putative transcription accessory protein n=1 Tax=Streptomyces
griseus subsp. griseus NBRC 13350 RepID=B1VTW9_STRGG
Length = 843
Score = 79.7 bits (195), Expect = 9e-14
Identities = 39/77 (50%), Positives = 53/77 (68%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
KL D++ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ +DVV+PG V V
Sbjct: 679 KLGDLEPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKPGDIVKV 738
Query: 325 KVLSVDAEKKRVSLELK 375
KV+ VD +KR+SL L+
Sbjct: 739 KVMDVDVPRKRISLTLR 755
[119][TOP]
>UniRef100_B1VG79 Putative transcriptional accessory protein n=1 Tax=Corynebacterium
urealyticum DSM 7109 RepID=B1VG79_CORU7
Length = 787
Score = 79.7 bits (195), Expect = 9e-14
Identities = 42/97 (43%), Positives = 59/97 (60%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RPS + + A E K+ DV+ G EGTVT V FGAFV+ G + +GLVH+S +
Sbjct: 624 RPSFKTASLAEGVE------KVSDVRPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAM 677
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
A F K+ +VV GQ V VKV+ VD +++R+ L L+
Sbjct: 678 ADRFVKDPHEVVHSGQVVKVKVMDVDVDRQRIGLSLR 714
[120][TOP]
>UniRef100_B0VPD0 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii
SDF RepID=B0VPD0_ACIBS
Length = 794
Score = 79.7 bits (195), Expect = 9e-14
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V
Sbjct: 647 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAE 405
+V+ VD E+ RV+L +++ AA A+
Sbjct: 707 RVMQVDVERNRVNLSMRAEGAAPVKAQ 733
[121][TOP]
>UniRef100_B7GVL1 Protein tex n=3 Tax=Acinetobacter baumannii RepID=B7GVL1_ACIB3
Length = 782
Score = 79.7 bits (195), Expect = 9e-14
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V
Sbjct: 635 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 694
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAE 405
+V+ VD E+ RV+L +++ AA A+
Sbjct: 695 RVMQVDVERNRVNLSMRAEGAAPVKAQ 721
[122][TOP]
>UniRef100_A3M9M3 Putative RNA binding protein n=1 Tax=Acinetobacter baumannii ATCC
17978 RepID=A3M9M3_ACIBT
Length = 561
Score = 79.7 bits (195), Expect = 9e-14
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V
Sbjct: 414 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 473
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAE 405
+V+ VD E+ RV+L +++ AA A+
Sbjct: 474 RVMQVDVERNRVNLSMRAEGAAPVKAQ 500
[123][TOP]
>UniRef100_A1R3T9 Putative transcriptional accessory protein n=1 Tax=Arthrobacter
aurescens TC1 RepID=A1R3T9_ARTAT
Length = 818
Score = 79.7 bits (195), Expect = 9e-14
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+K G EGTVT V FGAFV+ G + +GLVH+S L++ F + +++V+ GQ V V
Sbjct: 652 KISDLKPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALSNKFVSDPREIVKSGQVVRV 711
Query: 325 KVLSVDAEKKRVSLELK 375
KVL D E+KR+SL L+
Sbjct: 712 KVLEADPERKRISLTLR 728
[124][TOP]
>UniRef100_D0CCK6 Transcriptional accessory protein n=1 Tax=Acinetobacter baumannii
ATCC 19606 RepID=D0CCK6_ACIBA
Length = 794
Score = 79.7 bits (195), Expect = 9e-14
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V
Sbjct: 647 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAE 405
+V+ VD E+ RV+L +++ AA A+
Sbjct: 707 RVMQVDVERNRVNLSMRAEGAAPVKAQ 733
[125][TOP]
>UniRef100_C8Q161 Protein tex n=1 Tax=Enhydrobacter aerosaccus SK60
RepID=C8Q161_9GAMM
Length = 849
Score = 79.7 bits (195), Expect = 9e-14
Identities = 41/87 (47%), Positives = 55/87 (63%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L D+ EG EG VT V FG FV+ G + +GLVHIS++ + F + + V+PG VTV+
Sbjct: 689 LNDLTEGMTLEGVVTNVTSFGCFVDVGVHQDGLVHISEMGNEFIADPLNHVKPGDIVTVR 748
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEE 408
V+SVDAE+KRV +KS A A E
Sbjct: 749 VISVDAERKRVGFSMKSDTPMAAKAAE 775
[126][TOP]
>UniRef100_C6NZN2 RNA binding S1 domain protein n=1 Tax=Sideroxydans lithotrophicus
ES-1 RepID=C6NZN2_9GAMM
Length = 801
Score = 79.7 bits (195), Expect = 9e-14
Identities = 46/98 (46%), Positives = 61/98 (62%), Gaps = 7/98 (7%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
+L+D++ G EG VT V FGAFV+ G + +GLVHIS LA F K+ VV+ GQ V V
Sbjct: 672 ELKDLEPGMILEGVVTNVAAFGAFVDIGVHQDGLVHISALADKFVKDPHSVVKAGQIVKV 731
Query: 325 KVLSVDAEKKRVSLELKSAVAA-------EASAEESDD 417
KVL VD ++KRVSL ++ AA EA E+ D+
Sbjct: 732 KVLEVDVKRKRVSLTMRLTDAAGQAGGKPEAQREQRDN 769
[127][TOP]
>UniRef100_C4DR25 Transcriptional accessory protein n=1 Tax=Stackebrandtia
nassauensis DSM 44728 RepID=C4DR25_9ACTO
Length = 783
Score = 79.7 bits (195), Expect = 9e-14
Identities = 40/91 (43%), Positives = 57/91 (62%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
KL D+ G EGTVT V FGAFV+ G + +GLVHIS +++ + + +DV +PG V V
Sbjct: 646 KLSDLAPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHISAMSNDYVADPRDVAKPGDIVKV 705
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDD 417
+VL VD +KR+SL ++ AEA + D
Sbjct: 706 RVLEVDEARKRISLTMRLQDKAEAKPPKQSD 736
[128][TOP]
>UniRef100_B5D203 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM
17135 RepID=B5D203_9BACE
Length = 712
Score = 79.7 bits (195), Expect = 9e-14
Identities = 38/76 (50%), Positives = 51/76 (67%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L+D++EG E G VT + FG FV+ G NGLVH+S+LA F N DVV+ Q V VK
Sbjct: 633 LDDLQEGMELPGIVTNITNFGCFVDIGIKENGLVHVSQLADRFVSNPADVVRIHQHVRVK 692
Query: 328 VLSVDAEKKRVSLELK 375
V+S+D E+KR+ L +K
Sbjct: 693 VMSIDHERKRIQLTMK 708
[129][TOP]
>UniRef100_UPI0001BB9A2D transcriptional accessory protein n=1 Tax=Acinetobacter junii SH205
RepID=UPI0001BB9A2D
Length = 785
Score = 79.3 bits (194), Expect = 1e-13
Identities = 39/86 (45%), Positives = 58/86 (67%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V
Sbjct: 635 EVSQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 694
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASA 402
+V+ VD E+ RV+L +++ +A A A
Sbjct: 695 RVMQVDVERNRVNLSMRAEGSAPAKA 720
[130][TOP]
>UniRef100_UPI0001B53EE5 transcription accessory protein n=1 Tax=Streptomyces sp. SPB78
RepID=UPI0001B53EE5
Length = 1218
Score = 79.3 bits (194), Expect = 1e-13
Identities = 39/77 (50%), Positives = 53/77 (68%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
KL D++ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ ++VV+PG V V
Sbjct: 626 KLSDLEPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKPGDIVKV 685
Query: 325 KVLSVDAEKKRVSLELK 375
KVL VD +KR+SL L+
Sbjct: 686 KVLDVDLPRKRISLTLR 702
[131][TOP]
>UniRef100_UPI0001B4CC56 transcription accessory protein n=1 Tax=Streptomyces griseoflavus
Tu4000 RepID=UPI0001B4CC56
Length = 742
Score = 79.3 bits (194), Expect = 1e-13
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V
Sbjct: 646 KIADLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKV 705
Query: 325 KVLSVDAEKKRVSLELK 375
KVL VD +KR+SL L+
Sbjct: 706 KVLDVDVPRKRISLTLR 722
[132][TOP]
>UniRef100_UPI00019DD834 SSU ribosomal protein S1P n=1 Tax=Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446 RepID=UPI00019DD834
Length = 302
Score = 79.3 bits (194), Expect = 1e-13
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 13/141 (9%)
Frame = +1
Query: 64 QVAFTGVRPSVRVFAEAPAAEQAAKAIKL----------EDVKEGSEYEGTVTTVEEFGA 213
+V G R VRV P A + + +IK + + G +G V V +FGA
Sbjct: 148 EVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVRRVVDFGA 207
Query: 214 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV--- 384
FV GLVH+S++++ DV+QPGQ+VTV+VLSVD E+KR+SL ++ +
Sbjct: 208 FVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSSQPR 267
Query: 385 AAEASAEESDDIITEPDREGA 447
+ D TEP EGA
Sbjct: 268 GGQGRGGRRDRRPTEPRNEGA 288
Score = 70.5 bits (171), Expect = 6e-11
Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Frame = +1
Query: 124 EQAAKAIKL-EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVV 300
E A+A KL E++K G EGTV + +FGAFV+ G +GLVHIS+L+ + +VV
Sbjct: 92 ESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGG-ADGLVHISELSFSHVNHPSEVV 150
Query: 301 QPGQKVTVKVLSVDAEKKRVSLELKSAV 384
+ G +V V+VL VD E R+SL +K+A+
Sbjct: 151 REGDRVKVRVLRVDPEAGRISLSIKAAL 178
[133][TOP]
>UniRef100_UPI00019083B0 probable transcriptional accessory protein (RNA binding S1 domain)
n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI00019083B0
Length = 195
Score = 79.3 bits (194), Expect = 1e-13
Identities = 39/90 (43%), Positives = 58/90 (64%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 103 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 162
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESD 414
+V+ VDA++KR++L +K + A D
Sbjct: 163 RVVEVDAKRKRIALSMKRDDGSAAPPPRGD 192
[134][TOP]
>UniRef100_Q74GL1 S1 RNA binding domain protein n=1 Tax=Geobacter sulfurreducens
RepID=Q74GL1_GEOSL
Length = 761
Score = 79.3 bits (194), Expect = 1e-13
Identities = 42/105 (40%), Positives = 60/105 (57%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+KEG +G VT V FGAFV+ G + +GLVH+S L+ F K+ + V+ GQ V V
Sbjct: 643 EIGDLKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAVRVGQVVQV 702
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATD 459
KVLSVD ++KR+SL ++ A A E R+ D
Sbjct: 703 KVLSVDVQRKRISLSIREAAPGGAPRSTEKPARKEEPRKTGGGLD 747
[135][TOP]
>UniRef100_Q39Z96 RNA binding S1 n=1 Tax=Geobacter metallireducens GS-15
RepID=Q39Z96_GEOMG
Length = 757
Score = 79.3 bits (194), Expect = 1e-13
Identities = 38/84 (45%), Positives = 57/84 (67%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
+L D+KEG +G VT V FGAFV+ G + +GLVH+S L++ F K+ + V+ G+ V V
Sbjct: 642 ELSDLKEGMVLQGVVTNVTAFGAFVDIGVHQDGLVHVSHLSTRFVKDPNEAVRVGEVVKV 701
Query: 325 KVLSVDAEKKRVSLELKSAVAAEA 396
KVL+VD +KR+SL ++ A+ A
Sbjct: 702 KVLAVDVPRKRISLSIREAMEGGA 725
[136][TOP]
>UniRef100_Q21CQ2 RNA binding S1 n=1 Tax=Rhodopseudomonas palustris BisB18
RepID=Q21CQ2_RHOPB
Length = 782
Score = 79.3 bits (194), Expect = 1e-13
Identities = 42/97 (43%), Positives = 58/97 (59%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L+D+K G EG VT V FGAFV+ G + +GLVHIS ++ F K+ ++VV+PG V VK
Sbjct: 647 LKDLKPGMVLEGAVTNVAAFGAFVDIGVHQDGLVHISAMSRSFIKDPREVVKPGDIVKVK 706
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDR 438
VL VD +KR++L L+ A A+ P R
Sbjct: 707 VLEVDVARKRIALSLRLDDEVGAKADRVQAAPRGPSR 743
[137][TOP]
>UniRef100_Q1DCH5 S1 RNA binding domain protein n=1 Tax=Myxococcus xanthus DK 1622
RepID=Q1DCH5_MYXXD
Length = 783
Score = 79.3 bits (194), Expect = 1e-13
Identities = 36/77 (46%), Positives = 58/77 (75%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
LEDVKEG +G VT V FGAFV+ G + +GLVH+S++++ F K+ +VV+ G ++TV+
Sbjct: 637 LEDVKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQISTRFVKDPSEVVKVGDRLTVR 696
Query: 328 VLSVDAEKKRVSLELKS 378
VL+VD +KR++L +++
Sbjct: 697 VLTVDLARKRLALSVRA 713
[138][TOP]
>UniRef100_B3PRI3 Probable transcriptional accessory protein (RNA binding S1 domain)
n=1 Tax=Rhizobium etli CIAT 652 RepID=B3PRI3_RHIE6
Length = 769
Score = 79.3 bits (194), Expect = 1e-13
Identities = 39/90 (43%), Positives = 58/90 (64%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 643 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESD 414
+V+ VDA++KR++L +K + A D
Sbjct: 703 RVVEVDAKRKRIALSMKRDDGSAAPPPRGD 732
[139][TOP]
>UniRef100_A7NJ51 RNA binding S1 domain protein n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NJ51_ROSCS
Length = 503
Score = 79.3 bits (194), Expect = 1e-13
Identities = 41/79 (51%), Positives = 52/79 (65%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
KL ++ G EGTVT + FG FV+ G +GLVH+S+LA G + A+DVVQ GQ T
Sbjct: 231 KLAALRVGDNVEGTVTGLAPFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTF 290
Query: 325 KVLSVDAEKKRVSLELKSA 381
KVL VDAE R+SL L+ A
Sbjct: 291 KVLEVDAEGARISLSLRRA 309
Score = 73.2 bits (178), Expect = 9e-12
Identities = 35/83 (42%), Positives = 55/83 (66%)
Frame = +1
Query: 127 QAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQP 306
+A + KL+ +++G EGT++ + FGAFV+ G +GLVHIS+L++ +D V+
Sbjct: 308 RAQRGQKLQQLEKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNARVARVEDAVKV 367
Query: 307 GQKVTVKVLSVDAEKKRVSLELK 375
G KV V+VL VD + KR+SL L+
Sbjct: 368 GDKVQVRVLDVDPQSKRISLSLR 390
Score = 67.8 bits (164), Expect = 4e-10
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Frame = +1
Query: 49 PAGRRQVAFTGVRPSVRVFA---EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFV 219
P G +VA P+ A +APA + +++D+ G E EG VT++ +G FV
Sbjct: 97 PTGSAEVAPEAAAPAGTAEAASYQAPAEAPTGRPRRVKDLAPGMELEGRVTSIALYGIFV 156
Query: 220 NFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
+ G +GLVHIS+++ ++ D+V+ G V V+V SV+ + +R+SL ++
Sbjct: 157 DIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRRISLTMR 208
[140][TOP]
>UniRef100_A4WPJ7 RNA binding S1 domain protein n=1 Tax=Rhodobacter sphaeroides ATCC
17025 RepID=A4WPJ7_RHOS5
Length = 772
Score = 79.3 bits (194), Expect = 1e-13
Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 646 EISDLKVGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 705
Query: 325 KVLSVDAEKKRVSLEL-KSAVAAEASAEESDDIITEPDREG 444
+V+ VD +KR+ L + K + A A A E +EP R+G
Sbjct: 706 RVVEVDVARKRIGLTMRKDSADARAQASERK---SEPPRKG 743
[141][TOP]
>UniRef100_A1TSP0 RNA binding S1 domain protein n=1 Tax=Acidovorax citrulli AAC00-1
RepID=A1TSP0_ACIAC
Length = 788
Score = 79.3 bits (194), Expect = 1e-13
Identities = 37/76 (48%), Positives = 56/76 (73%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
+ D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+L+ F ++A+++V+ G V VK
Sbjct: 658 IADLKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDIVKVK 717
Query: 328 VLSVDAEKKRVSLELK 375
VL VD +KR+SL +K
Sbjct: 718 VLEVDPVRKRISLTMK 733
[142][TOP]
>UniRef100_C8WX93 RNA binding S1 domain protein n=1 Tax=Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446
RepID=C8WX93_ALIAC
Length = 385
Score = 79.3 bits (194), Expect = 1e-13
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 13/141 (9%)
Frame = +1
Query: 64 QVAFTGVRPSVRVFAEAPAAEQAAKAIKL----------EDVKEGSEYEGTVTTVEEFGA 213
+V G R VRV P A + + +IK + + G +G V V +FGA
Sbjct: 231 EVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVRRVVDFGA 290
Query: 214 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV--- 384
FV GLVH+S++++ DV+QPGQ+VTV+VLSVD E+KR+SL ++ +
Sbjct: 291 FVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSSQPR 350
Query: 385 AAEASAEESDDIITEPDREGA 447
+ D TEP EGA
Sbjct: 351 GGQGRGGRRDRRPTEPRNEGA 371
Score = 70.5 bits (171), Expect = 6e-11
Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Frame = +1
Query: 124 EQAAKAIKL-EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVV 300
E A+A KL E++K G EGTV + +FGAFV+ G +GLVHIS+L+ + +VV
Sbjct: 175 ESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGG-ADGLVHISELSFSHVNHPSEVV 233
Query: 301 QPGQKVTVKVLSVDAEKKRVSLELKSAV 384
+ G +V V+VL VD E R+SL +K+A+
Sbjct: 234 REGDRVKVRVLRVDPEAGRISLSIKAAL 261
[143][TOP]
>UniRef100_C6XX62 RNA binding S1 domain protein n=1 Tax=Pedobacter heparinus DSM 2366
RepID=C6XX62_PEDHD
Length = 775
Score = 79.3 bits (194), Expect = 1e-13
Identities = 38/88 (43%), Positives = 57/88 (64%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G + G VT + FGAFV+ G + +GLVH S+++ F NA DVV+ QKV V
Sbjct: 630 EISDLKVGMKLPGIVTNITNFGAFVDIGVHQDGLVHTSQISDKFVANAADVVKVHQKVEV 689
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEE 408
V+ VD +KR+SL +K V A+ +E+
Sbjct: 690 TVVEVDVARKRISLSMKKEVGAKPKSEQ 717
[144][TOP]
>UniRef100_B5KA30 RNA binding S1 domain protein n=1 Tax=Octadecabacter antarcticus
238 RepID=B5KA30_9RHOB
Length = 773
Score = 79.3 bits (194), Expect = 1e-13
Identities = 39/97 (40%), Positives = 57/97 (58%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
+ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ D+V+ G V V+
Sbjct: 644 ITDLKSGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHDIVKAGDVVRVR 703
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDR 438
V +D +KR++L ++ S E D +P R
Sbjct: 704 VTEIDVPRKRIALSMRKDGGDAPSPRERDSKKPQPAR 740
[145][TOP]
>UniRef100_B4X3W4 S1 RNA binding domain protein n=1 Tax=Alcanivorax sp. DG881
RepID=B4X3W4_9GAMM
Length = 791
Score = 79.3 bits (194), Expect = 1e-13
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Frame = +1
Query: 115 PAAEQAAKAIK-----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFT 279
P E A A+K L+D+K+ EGTVT V FGAFV+ G + +GLVH+S LA F
Sbjct: 628 PRPEFKAAALKEGVETLKDLKQSMILEGTVTNVTNFGAFVDIGVHQDGLVHVSALADKFV 687
Query: 280 KNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
++ VV PG V VKVL VD ++KR+SL ++
Sbjct: 688 EDPHQVVAPGDIVKVKVLDVDLDRKRISLTMR 719
[146][TOP]
>UniRef100_B4DC92 RNA binding S1 domain protein n=1 Tax=Chthoniobacter flavus
Ellin428 RepID=B4DC92_9BACT
Length = 770
Score = 79.3 bits (194), Expect = 1e-13
Identities = 38/80 (47%), Positives = 55/80 (68%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ED+K G + G VT V FGAFV+ G + +GLVHIS+++ F KN DV++ GQ+V
Sbjct: 640 KMEDLKVGLKLPGIVTNVTAFGAFVDIGVHQDGLVHISQMSDEFVKNPADVLKVGQRVQA 699
Query: 325 KVLSVDAEKKRVSLELKSAV 384
V+ VD +KR++L LK+ V
Sbjct: 700 TVMEVDMARKRIALSLKTKV 719
[147][TOP]
>UniRef100_A6CAB9 Polynucleotide phosphorylase/polyadenylase n=1 Tax=Planctomyces
maris DSM 8797 RepID=A6CAB9_9PLAN
Length = 711
Score = 79.3 bits (194), Expect = 1e-13
Identities = 39/97 (40%), Positives = 64/97 (65%)
Frame = +1
Query: 151 EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKV 330
E+++ G Y+G V++++EFGAF+ +GL HIS+L+ GF K+ D+ + G ++ VKV
Sbjct: 617 EEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKV 676
Query: 331 LSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDRE 441
++VD ++ RV L K AV AE + E + D+ TE + E
Sbjct: 677 IAVD-DQNRVKLSRK-AVLAEQAGESNGDVDTEAEEE 711
[148][TOP]
>UniRef100_UPI0001B4E1EC transcriptional accessory protein n=1 Tax=Streptomyces
viridochromogenes DSM 40736 RepID=UPI0001B4E1EC
Length = 794
Score = 79.0 bits (193), Expect = 2e-13
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V
Sbjct: 649 KISDLSAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKV 708
Query: 325 KVLSVDAEKKRVSLELK 375
KVL VD +KR+SL L+
Sbjct: 709 KVLDVDIPRKRISLTLR 725
[149][TOP]
>UniRef100_UPI0001905DA4 probable transcriptional accessory protein (RNA binding S1 domain)
n=1 Tax=Rhizobium etli GR56 RepID=UPI0001905DA4
Length = 256
Score = 79.0 bits (193), Expect = 2e-13
Identities = 38/90 (42%), Positives = 58/90 (64%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 130 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 189
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESD 414
+V+ VDA++KR+ L ++ ++ S D
Sbjct: 190 RVVEVDAKRKRIGLSMRRDDGSQPSQPRGD 219
[150][TOP]
>UniRef100_Q8YLP7 Alr5249 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YLP7_ANASP
Length = 719
Score = 79.0 bits (193), Expect = 2e-13
Identities = 39/78 (50%), Positives = 56/78 (71%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D++EG E EG VT V FGAFV+ G + +GLVHIS+LA F + K VV+ GQ V V
Sbjct: 639 EITDLQEGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKKVVKVGQVVKV 698
Query: 325 KVLSVDAEKKRVSLELKS 378
+VL V+A+ +R+SL +K+
Sbjct: 699 RVLEVNAKLRRISLSMKA 716
[151][TOP]
>UniRef100_Q2W1Q4 TEX protein n=1 Tax=Magnetospirillum magneticum AMB-1
RepID=Q2W1Q4_MAGSA
Length = 787
Score = 79.0 bits (193), Expect = 2e-13
Identities = 43/100 (43%), Positives = 60/100 (60%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L D+K G EG VT V FGAFV+ G + +GLVHIS LA F K+ +VV+PG V VK
Sbjct: 659 LNDLKPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVK 718
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGA 447
VL VD ++ R++L ++ + A+ + DD +R A
Sbjct: 719 VLEVDIKRSRIALSMR--MDAQPAPARKDDAPRRDERRPA 756
[152][TOP]
>UniRef100_Q07UL0 RNA binding S1 domain protein n=1 Tax=Rhodopseudomonas palustris
BisA53 RepID=Q07UL0_RHOP5
Length = 784
Score = 79.0 bits (193), Expect = 2e-13
Identities = 43/100 (43%), Positives = 60/100 (60%)
Frame = +1
Query: 118 AAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDV 297
AAE L+D+K G EG VT V FGAFV+ G + +GLVHIS ++ F K+ ++V
Sbjct: 639 AAEFKEGVETLKDLKVGMILEGAVTNVAAFGAFVDIGVHQDGLVHISAMSKTFIKDPREV 698
Query: 298 VQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDD 417
V+PG V VKVL VD +KR++L L+ A ++ D
Sbjct: 699 VKPGDIVKVKVLEVDVARKRIALTLRLDDEVGAKSDRKPD 738
[153][TOP]
>UniRef100_C3M8T0 Putative RNA-binding domain transcriptional regulator n=1
Tax=Rhizobium sp. NGR234 RepID=C3M8T0_RHISN
Length = 766
Score = 79.0 bits (193), Expect = 2e-13
Identities = 38/86 (44%), Positives = 56/86 (65%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++D+K G + EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V+
Sbjct: 642 IKDLKVGMQLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVRVR 701
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAE 405
V VD +KR+ L ++ AE + E
Sbjct: 702 VTEVDVARKRIGLSMRKDGGAETARE 727
[154][TOP]
>UniRef100_Q1ZC98 Putative uncharacterized protein n=1 Tax=Psychromonas sp. CNPT3
RepID=Q1ZC98_9GAMM
Length = 723
Score = 79.0 bits (193), Expect = 2e-13
Identities = 37/77 (48%), Positives = 56/77 (72%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+ E +G +T V FGAFV+ G + +GL+H+S+LA+ F K+ +VV+ GQ V V
Sbjct: 641 KISDLYTDMEIQGVITNVTSFGAFVDIGVHQDGLIHLSQLANKFVKDPFEVVKTGQIVQV 700
Query: 325 KVLSVDAEKKRVSLELK 375
+VLSVD+E+KR+SL L+
Sbjct: 701 RVLSVDSERKRISLSLR 717
[155][TOP]
>UniRef100_C9PPH0 YhgF like protein n=1 Tax=Pasteurella dagmatis ATCC 43325
RepID=C9PPH0_9PAST
Length = 771
Score = 79.0 bits (193), Expect = 2e-13
Identities = 40/107 (37%), Positives = 63/107 (58%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVHIS L+ F ++ VV+ G V V
Sbjct: 644 EISDLKAGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKV 703
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDD 465
KVL VD +KR++L ++ +A +++++D ++ R D
Sbjct: 704 KVLEVDVPRKRIALTMRLEESAVKNSDKTDRTLSTKSRSNPSTKGRD 750
[156][TOP]
>UniRef100_C2Z291 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=2 Tax=Bacillus cereus RepID=C2Z291_BACCE
Length = 722
Score = 79.0 bits (193), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[157][TOP]
>UniRef100_C2C0H7 S1 domain RNA-binding protein n=1 Tax=Listeria grayi DSM 20601
RepID=C2C0H7_LISGR
Length = 726
Score = 79.0 bits (193), Expect = 2e-13
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+K+ED+K G E +GTV V +FGAFV+ G +GLVHISKL+ F KN DVV G VT
Sbjct: 642 VKMEDLKPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFIKNPMDVVSVGDIVT 701
Query: 322 VKVLSVDAEKKRVSL 366
V V VD K R++L
Sbjct: 702 VWVEEVDLNKNRIAL 716
[158][TOP]
>UniRef100_C0DY06 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC
23834 RepID=C0DY06_EIKCO
Length = 758
Score = 79.0 bits (193), Expect = 2e-13
Identities = 41/103 (39%), Positives = 68/103 (66%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D++ G EG V+ V FGAFV+ G + +GLVHIS L++ F ++ ++VV+ G V V
Sbjct: 633 EISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKV 692
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADA 453
KVL VDA +KR++L ++ + EA AE+ + E ++ GA++
Sbjct: 693 KVLEVDAARKRIALTMR--LDDEAGAEKHGKRLPETEKRGANS 733
[159][TOP]
>UniRef100_A7VC71 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50
RepID=A7VC71_9CLOT
Length = 716
Score = 79.0 bits (193), Expect = 2e-13
Identities = 40/90 (44%), Positives = 58/90 (64%)
Frame = +1
Query: 106 AEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 285
+E P ++++D+KEG +GTV V +FGAFV+ G + +GLVHIS+++ F K+
Sbjct: 623 SEMPQPILRGDILEMKDLKEGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKH 682
Query: 286 AKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
DVV G VTVKV+ VD KKR+ L +K
Sbjct: 683 PLDVVSVGDIVTVKVMGVDLAKKRIQLTMK 712
[160][TOP]
>UniRef100_A4EBC2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
ATCC 25986 RepID=A4EBC2_9ACTN
Length = 442
Score = 79.0 bits (193), Expect = 2e-13
Identities = 39/88 (44%), Positives = 59/88 (67%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
+AP + A+ ++D++ G E +GTV V +FGAFV+ G + +GLVHISKLA+ F K+
Sbjct: 351 DAPEVVFSRSALSIDDLEPGMELKGTVRNVVDFGAFVDVGVHQDGLVHISKLANRFVKHP 410
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
DVV+ G V V V VD ++K++SL +
Sbjct: 411 SDVVRVGDTVKVWVEKVDRDRKKISLTM 438
[161][TOP]
>UniRef100_C6RQH0 Transcriptional accessory protein n=2 Tax=Acinetobacter
radioresistens RepID=C6RQH0_ACIRA
Length = 785
Score = 78.6 bits (192), Expect = 2e-13
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + +V+PGQ V V+
Sbjct: 636 VKQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKIVKPGQIVQVR 695
Query: 328 VLSVDAEKKRVSLELKSAVAA 390
V+ VDAE+ RV+L ++ AA
Sbjct: 696 VIQVDAERNRVNLSMRPEGAA 716
[162][TOP]
>UniRef100_UPI0001BB068E Tex-like protein protein-like protein n=1 Tax=Gordonia bronchialis
DSM 43247 RepID=UPI0001BB068E
Length = 815
Score = 78.6 bits (192), Expect = 2e-13
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E A AA K+ D++ G EG VT V FGAFV+ G + +GLVH+S +A+ F +
Sbjct: 628 EFKTATFAAGIEKVSDLRPGMILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANRFVSDP 687
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRV--SLELKSAVAAEASAEESDDIITEPDREGADATDD 462
++VV+ G VTVKV+ VD E+KR+ SL L A ++ S +R G TDD
Sbjct: 688 REVVKSGDIVTVKVMEVDVERKRIGLSLRLDDEPGAPSTGGRSG---RREERGGGPRTDD 744
[163][TOP]
>UniRef100_Q81IT3 Transcription accessory protein (S1 RNA binding domain) n=1
Tax=Bacillus cereus ATCC 14579 RepID=Q81IT3_BACCR
Length = 724
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 644 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 703
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 704 VWVDDIDTKKGRVALSM 720
[164][TOP]
>UniRef100_Q60A39 S1 RNA binding domain protein n=1 Tax=Methylococcus capsulatus
RepID=Q60A39_METCA
Length = 735
Score = 78.6 bits (192), Expect = 2e-13
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Frame = +1
Query: 151 EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKV 330
+D++ G EG VT V FGAFV+ G + +GLVHIS LA F ++ ++VV+ G V VKV
Sbjct: 613 KDLEPGMRLEGVVTNVTNFGAFVDVGVHQDGLVHISHLADRFVRDPREVVKAGDVVQVKV 672
Query: 331 LSVDAEKKRVSLELKSAVA---AEASAEESDDIITEPDREGA 447
L VD ++R++L ++S A AE E+ + +P R A
Sbjct: 673 LEVDIPRRRIALSMRSDAAKGEAEPPRRETGETAGKPRRRAA 714
[165][TOP]
>UniRef100_Q47TS6 RNA binding S1:Resolvase, RNase H-like fold n=1 Tax=Thermobifida
fusca YX RepID=Q47TS6_THEFY
Length = 777
Score = 78.6 bits (192), Expect = 2e-13
Identities = 42/105 (40%), Positives = 61/105 (58%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
+ D++ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V VK
Sbjct: 646 ITDLEPGMVLEGVVTNVAAFGAFVDVGVHHDGLVHVSAMSKSFVKDPRDVVKPGDIVRVK 705
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDD 462
VL VD +KR+SL L+ + + E++ E GA D
Sbjct: 706 VLDVDVRRKRISLTLRLDDEVDQRSGENNRSGGERRERGAPRRGD 750
[166][TOP]
>UniRef100_Q3MCX9 RNA binding S1 n=1 Tax=Anabaena variabilis ATCC 29413
RepID=Q3MCX9_ANAVT
Length = 719
Score = 78.6 bits (192), Expect = 2e-13
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D++EG E EG VT V FGAFV+ G + +GLVHIS+L F + K VV+ GQ V V
Sbjct: 639 EITDLQEGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLTDRFVDDPKKVVKVGQVVKV 698
Query: 325 KVLSVDAEKKRVSLELKS 378
+VL V+A+ KR+SL +K+
Sbjct: 699 RVLEVNAKLKRISLSMKA 716
[167][TOP]
>UniRef100_Q1WSR3 Transcription accessory protein n=1 Tax=Lactobacillus salivarius
UCC118 RepID=Q1WSR3_LACS1
Length = 723
Score = 78.6 bits (192), Expect = 2e-13
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+K+ED+K G + EGTV V +FGAFV+ G +GLVH+SKL+ + N +DVV GQ VT
Sbjct: 642 LKIEDLKAGMQLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVT 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V VD +KR+ L +
Sbjct: 702 VWVEDVDLNRKRIQLTM 718
[168][TOP]
>UniRef100_Q01R15 RNA binding S1 domain protein n=1 Tax=Candidatus Solibacter
usitatus Ellin6076 RepID=Q01R15_SOLUE
Length = 749
Score = 78.6 bits (192), Expect = 2e-13
Identities = 37/82 (45%), Positives = 58/82 (70%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D++ G EG VT V FGAF++ G + +GLVH+S+LA+ F K+A +VV+ GQ V V
Sbjct: 636 EIADLQPGMTLEGVVTNVTRFGAFIDVGVHNDGLVHVSQLANRFVKDASEVVKAGQIVKV 695
Query: 325 KVLSVDAEKKRVSLELKSAVAA 390
+V+S D + KR++L +K+ AA
Sbjct: 696 QVISADPKTKRIALSMKALDAA 717
[169][TOP]
>UniRef100_B7IU35 S1 RNA binding domain protein n=1 Tax=Bacillus cereus G9842
RepID=B7IU35_BACC2
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[170][TOP]
>UniRef100_B7H4P5 S1 RNA binding domain protein n=1 Tax=Bacillus cereus B4264
RepID=B7H4P5_BACC4
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[171][TOP]
>UniRef100_C8NGU9 Histidine triad domain-containing protein n=1 Tax=Granulicatella
adiacens ATCC 49175 RepID=C8NGU9_9LACT
Length = 751
Score = 78.6 bits (192), Expect = 2e-13
Identities = 40/77 (51%), Positives = 51/77 (66%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+K+ED++ G E EGTV V +FGAFV+ G +GLVHISKL GF K+ DVV G VT
Sbjct: 667 LKMEDLQVGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVT 726
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV L +
Sbjct: 727 VWVTELDLKKGRVGLSM 743
[172][TOP]
>UniRef100_C4EGE5 Transcriptional accessory protein n=1 Tax=Streptosporangium roseum
DSM 43021 RepID=C4EGE5_STRRS
Length = 797
Score = 78.6 bits (192), Expect = 2e-13
Identities = 39/77 (50%), Positives = 52/77 (67%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
KL D+ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ ++VV+PG V V
Sbjct: 636 KLSDLTPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSHNFVKDPREVVKPGDIVRV 695
Query: 325 KVLSVDAEKKRVSLELK 375
KVL VD +KR+SL L+
Sbjct: 696 KVLDVDIPRKRISLTLR 712
[173][TOP]
>UniRef100_C3IDV7 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Bacillus thuringiensis IBL 4222
RepID=C3IDV7_BACTU
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[174][TOP]
>UniRef100_C3GVJ8 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1 RepID=C3GVJ8_BACTU
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[175][TOP]
>UniRef100_C3DE64 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Bacillus thuringiensis serovar sotto
str. T04001 RepID=C3DE64_BACTS
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[176][TOP]
>UniRef100_C3CD35 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=4 Tax=Bacillus thuringiensis
RepID=C3CD35_BACTU
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[177][TOP]
>UniRef100_C3BEW6 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Bacillus pseudomycoides DSM 12442
RepID=C3BEW6_9BACI
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V VD +K RV+L +
Sbjct: 702 VWVDDVDMKKGRVALAM 718
[178][TOP]
>UniRef100_C3AGL6 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=2 Tax=Bacillus mycoides RepID=C3AGL6_BACMY
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V VD +K RV+L +
Sbjct: 702 VWVDDVDMKKGRVALAM 718
[179][TOP]
>UniRef100_C2Y524 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Bacillus cereus AH676 RepID=C2Y524_BACCE
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[180][TOP]
>UniRef100_C2SVD2 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=3 Tax=Bacillus cereus group RepID=C2SVD2_BACCE
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[181][TOP]
>UniRef100_C2RHI8 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Bacillus cereus BDRD-ST24
RepID=C2RHI8_BACCE
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSI 718
[182][TOP]
>UniRef100_C2R2J5 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=4 Tax=Bacillus cereus group RepID=C2R2J5_BACCE
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[183][TOP]
>UniRef100_C2MVA4 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Bacillus cereus ATCC 10876
RepID=C2MVA4_BACCE
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[184][TOP]
>UniRef100_C1V3S8 Transcriptional accessory protein n=1 Tax=Haliangium ochraceum DSM
14365 RepID=C1V3S8_9DELT
Length = 801
Score = 78.6 bits (192), Expect = 2e-13
Identities = 37/77 (48%), Positives = 55/77 (71%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
LED+K + EG VT V +FGAFV+ G + +GLVHIS+L+ F K+ ++VV+ G K+ V+
Sbjct: 648 LEDLKPEMQLEGVVTNVTDFGAFVDVGVHQDGLVHISQLSDRFVKDPREVVKVGDKIKVR 707
Query: 328 VLSVDAEKKRVSLELKS 378
VL VD +KR++L +S
Sbjct: 708 VLDVDLARKRIALSARS 724
[185][TOP]
>UniRef100_C0UKG5 Transcriptional accessory protein n=1 Tax=Gordonia bronchialis DSM
43247 RepID=C0UKG5_9ACTO
Length = 852
Score = 78.6 bits (192), Expect = 2e-13
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E A AA K+ D++ G EG VT V FGAFV+ G + +GLVH+S +A+ F +
Sbjct: 665 EFKTATFAAGIEKVSDLRPGMILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANRFVSDP 724
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRV--SLELKSAVAAEASAEESDDIITEPDREGADATDD 462
++VV+ G VTVKV+ VD E+KR+ SL L A ++ S +R G TDD
Sbjct: 725 REVVKSGDIVTVKVMEVDVERKRIGLSLRLDDEPGAPSTGGRSG---RREERGGGPRTDD 781
[186][TOP]
>UniRef100_C0AEY5 RNA binding S1 domain protein (Fragment) n=1 Tax=Opitutaceae
bacterium TAV2 RepID=C0AEY5_9BACT
Length = 788
Score = 78.6 bits (192), Expect = 2e-13
Identities = 37/78 (47%), Positives = 54/78 (69%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K ED+K G + G VT V FGAFV+ G + +GLVH+S+L+ F K+A +VV+PGQKV
Sbjct: 679 KPEDLKPGMKLPGIVTNVTAFGAFVDVGVHQDGLVHVSQLSDTFVKDASEVVKPGQKVRA 738
Query: 325 KVLSVDAEKKRVSLELKS 378
V+ VD + R++L L++
Sbjct: 739 TVIEVDLARNRIALSLRT 756
[187][TOP]
>UniRef100_B7QVY1 S1 RNA binding domain protein n=1 Tax=Ruegeria sp. R11
RepID=B7QVY1_9RHOB
Length = 786
Score = 78.6 bits (192), Expect = 2e-13
Identities = 40/89 (44%), Positives = 55/89 (61%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ GQ V V
Sbjct: 642 EITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKV 701
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEES 411
V VD +KR+ L +K A A E +
Sbjct: 702 TVTEVDVPRKRIGLTMKKDGGASAKEERN 730
[188][TOP]
>UniRef100_B5UVX0 S1 RNA binding domain protein n=2 Tax=Bacillus cereus
RepID=B5UVX0_BACCE
Length = 722
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[189][TOP]
>UniRef100_A9GDT8 RNA binding S1 n=1 Tax=Phaeobacter gallaeciensis BS107
RepID=A9GDT8_9RHOB
Length = 788
Score = 78.6 bits (192), Expect = 2e-13
Identities = 40/88 (45%), Positives = 55/88 (62%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
+ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ GQ V V
Sbjct: 643 ITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVT 702
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEES 411
V VD +KR++L +K A A E +
Sbjct: 703 VTEVDVPRKRIALTMKKDGGASAKEERT 730
[190][TOP]
>UniRef100_A9EP33 S1 RNA binding domain protein n=1 Tax=Phaeobacter gallaeciensis
2.10 RepID=A9EP33_9RHOB
Length = 788
Score = 78.6 bits (192), Expect = 2e-13
Identities = 40/88 (45%), Positives = 55/88 (62%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
+ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ GQ V V
Sbjct: 643 ITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVT 702
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEES 411
V VD +KR++L +K A A E +
Sbjct: 703 VTEVDVPRKRIALTMKKDGGASAKEERT 730
[191][TOP]
>UniRef100_Q7SB69 Putative uncharacterized protein n=1 Tax=Neurospora crassa
RepID=Q7SB69_NEUCR
Length = 1774
Score = 78.6 bits (192), Expect = 2e-13
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNF--GANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+ D+KEG G V VEEFGAF++ AN +GL H S+++ K+A+ + + G KV
Sbjct: 1282 ISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDKVK 1341
Query: 322 VKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDED 471
KVL VD KR++L LK + E E+ D + E D E ++ D DED
Sbjct: 1342 AKVLKVDITAKRINLGLKPSYFGEQDDEDEMD-VDEEDAEDSEGDDSDED 1390
[192][TOP]
>UniRef100_Q6LY64 RNA binding S1 n=1 Tax=Methanococcus maripaludis RepID=Q6LY64_METMP
Length = 713
Score = 78.6 bits (192), Expect = 2e-13
Identities = 38/91 (41%), Positives = 58/91 (63%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
+ P + ++LED+KEG +GTV + +FGAF++ G + +GL HIS++A F K+
Sbjct: 622 DLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHP 681
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 381
DV+ G V V V+ +D +KKRVSL +K A
Sbjct: 682 LDVISVGDIVDVMVMDIDFDKKRVSLSIKRA 712
[193][TOP]
>UniRef100_A9AAH9 RNA binding S1 domain protein n=1 Tax=Methanococcus maripaludis C6
RepID=A9AAH9_METM6
Length = 713
Score = 78.6 bits (192), Expect = 2e-13
Identities = 38/91 (41%), Positives = 58/91 (63%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
+ P + ++LED+KEG +GTV + +FGAF++ G + +GL HIS++A F K+
Sbjct: 622 DLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHP 681
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 381
DV+ G V V V+ +D +KKRVSL +K A
Sbjct: 682 LDVISVGDIVDVMVMDIDFDKKRVSLSIKRA 712
[194][TOP]
>UniRef100_A4FX43 RNA binding S1 domain protein n=1 Tax=Methanococcus maripaludis C5
RepID=A4FX43_METM5
Length = 713
Score = 78.6 bits (192), Expect = 2e-13
Identities = 38/91 (41%), Positives = 58/91 (63%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
+ P + ++LED+KEG +GTV + +FGAF++ G + +GL HIS++A F K+
Sbjct: 622 DLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHP 681
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 381
DV+ G V V V+ +D +KKRVSL +K A
Sbjct: 682 LDVISVGDIVDVMVMDIDFDKKRVSLSIKRA 712
[195][TOP]
>UniRef100_UPI0001B4A059 RNA-binding protein n=1 Tax=Bacteroides sp. 2_1_7
RepID=UPI0001B4A059
Length = 708
Score = 78.2 bits (191), Expect = 3e-13
Identities = 44/97 (45%), Positives = 56/97 (57%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
R +++VFA P + +ED+KEG G VT + FG FV+ G NGLVHIS+L
Sbjct: 616 RQTIQVFAFDPTVKT------IEDLKEGQVLPGIVTNITNFGCFVDVGIKENGLVHISEL 669
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
A F + VV Q V VKVLSVD +KRV L +K
Sbjct: 670 ADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMK 706
[196][TOP]
>UniRef100_UPI0001AF4EAF transcriptional accessory protein Tex n=1 Tax=Mycobacterium
kansasii ATCC 12478 RepID=UPI0001AF4EAF
Length = 753
Score = 78.2 bits (191), Expect = 3e-13
Identities = 39/82 (47%), Positives = 53/82 (64%)
Frame = +1
Query: 130 AAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPG 309
AA K+ D+K G EG VT V FGAFV+ G + +GLVH+S +A F + DVV+ G
Sbjct: 625 AAGVQKIADLKVGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMAERFVADPHDVVRSG 684
Query: 310 QKVTVKVLSVDAEKKRVSLELK 375
Q V VKV+ VD E++R+ L L+
Sbjct: 685 QVVRVKVIDVDVERRRIGLSLR 706
[197][TOP]
>UniRef100_UPI000185BF30 transcriptional accessory protein n=1 Tax=Corynebacterium
amycolatum SK46 RepID=UPI000185BF30
Length = 763
Score = 78.2 bits (191), Expect = 3e-13
Identities = 37/77 (48%), Positives = 52/77 (67%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D++ G EGTVT V FGAFV+ G + +GLVH+S +A GF + +VV+ G+ V V
Sbjct: 641 KISDLQPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSNMARGFVSDPHEVVRSGEVVKV 700
Query: 325 KVLSVDAEKKRVSLELK 375
KVL VD E+ R+ L L+
Sbjct: 701 KVLDVDVERNRIGLSLR 717
[198][TOP]
>UniRef100_Q65QE6 Putative uncharacterized protein n=1 Tax=Mannheimia
succiniciproducens MBEL55E RepID=Q65QE6_MANSM
Length = 771
Score = 78.2 bits (191), Expect = 3e-13
Identities = 39/106 (36%), Positives = 65/106 (61%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGT+T V FGAFV+ G + +GLVHIS L+ F ++ VV+ G V V
Sbjct: 644 EITDLKAGMILEGTITNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDVVKV 703
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDD 462
KVL VD ++R++L ++ +A ++E+SD ++ + + D+
Sbjct: 704 KVLEVDVARRRIALTMRLDESAVKNSEKSDRTLSTKSGQDRNRRDN 749
[199][TOP]
>UniRef100_Q5YS43 Putative RNA-binding protein n=1 Tax=Nocardia farcinica
RepID=Q5YS43_NOCFA
Length = 783
Score = 78.2 bits (191), Expect = 3e-13
Identities = 40/89 (44%), Positives = 56/89 (62%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E AE AA K+ D+K G EG VT V FGAFV+ G + +GLVH+S ++ F K+
Sbjct: 628 EFKTAEFAAGVEKVADLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHSFVKDP 687
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
++VV+ G V VKVL VD ++R+ L L+
Sbjct: 688 REVVKSGDVVKVKVLEVDVARQRIGLSLR 716
[200][TOP]
>UniRef100_Q5WJU8 Transcriptional accessory protein n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WJU8_BACSK
Length = 720
Score = 78.2 bits (191), Expect = 3e-13
Identities = 40/100 (40%), Positives = 62/100 (62%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP+ E A + +K+ED+++G E +GTV + +FGAFV+ G +GLVH+SKL
Sbjct: 619 RPNRDPRDELAAPQLKQDVLKMEDLEKGMELQGTVRNIVDFGAFVDIGVKQDGLVHVSKL 678
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 384
+ + K+ +VV G VTV V VD +K R+SL +K+ +
Sbjct: 679 SDRYIKHPMEVVSIGDVVTVWVEDVDEKKGRISLTMKAPI 718
[201][TOP]
>UniRef100_Q1MKQ5 Putative RNA-binding domain transcriptional regulator n=1
Tax=Rhizobium leguminosarum bv. viciae 3841
RepID=Q1MKQ5_RHIL3
Length = 769
Score = 78.2 bits (191), Expect = 3e-13
Identities = 38/90 (42%), Positives = 57/90 (63%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 643 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESD 414
+V+ VDA++KR+ L ++ + A D
Sbjct: 703 RVVEVDAKRKRIGLSMRRDDGSSAPPPRGD 732
[202][TOP]
>UniRef100_C6C261 RNA binding S1 domain protein n=1 Tax=Desulfovibrio salexigens DSM
2638 RepID=C6C261_DESAD
Length = 716
Score = 78.2 bits (191), Expect = 3e-13
Identities = 36/79 (45%), Positives = 54/79 (68%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D++EG G VT V FGAFV+ G + +GLVHIS++A F ++ VV PGQ + V
Sbjct: 636 EVSDLREGMILNGIVTNVTAFGAFVDIGVHQDGLVHISRMADDFVRDPATVVHPGQALKV 695
Query: 325 KVLSVDAEKKRVSLELKSA 381
KVL VD ++KR+SL ++ +
Sbjct: 696 KVLDVDIQRKRISLSMRQS 714
[203][TOP]
>UniRef100_B1Y002 RNA binding S1 domain protein n=1 Tax=Leptothrix cholodnii SP-6
RepID=B1Y002_LEPCP
Length = 827
Score = 78.2 bits (191), Expect = 3e-13
Identities = 36/82 (43%), Positives = 58/82 (70%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++D+ EG EGTV+ V +FGAF++ G + +GLVH+S+L++ F +A++VV+ G V V+
Sbjct: 699 IKDLSEGMVLEGTVSNVAQFGAFIDLGVHQDGLVHVSQLSNKFVNDAREVVKTGDIVKVR 758
Query: 328 VLSVDAEKKRVSLELKSAVAAE 393
VL VD +KR+SL +K A+
Sbjct: 759 VLEVDLARKRISLTMKLDAPAQ 780
[204][TOP]
>UniRef100_A7GKE9 RNA binding S1 domain protein n=1 Tax=Bacillus cytotoxicus NVH
391-98 RepID=A7GKE9_BACCN
Length = 722
Score = 78.2 bits (191), Expect = 3e-13
Identities = 40/77 (51%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAF++ G +GLVHISKL+ F K+ D+V GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V VD +K RV+L +
Sbjct: 702 VWVDDVDMKKGRVALSM 718
[205][TOP]
>UniRef100_A1WZ97 RNA binding S1 domain protein n=1 Tax=Halorhodospira halophila SL1
RepID=A1WZ97_HALHL
Length = 798
Score = 78.2 bits (191), Expect = 3e-13
Identities = 44/107 (41%), Positives = 61/107 (57%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP R A E K++D++ G EGTVT V FGAFV+ G + +GLVHIS L
Sbjct: 642 RPEFRTAAFREGVE------KIQDLEPGMVLEGTVTNVANFGAFVDIGVHQDGLVHISAL 695
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAE 405
A F ++ +D V+ G V VKV+ VD E++R+ L ++ A AE
Sbjct: 696 AHEFVRDPRDKVRTGDVVQVKVMEVDLERQRIGLSMRLDDDPNAQAE 742
[206][TOP]
>UniRef100_C9BPK0 RNA binding protein S1 n=7 Tax=Enterococcus faecium
RepID=C9BPK0_ENTFC
Length = 726
Score = 78.2 bits (191), Expect = 3e-13
Identities = 42/90 (46%), Positives = 54/90 (60%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E PA + +ED+K G E GTV V +FGAFV+ G +GLVHISKL+ F K+
Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELKS 378
DVV G VTV + VD +K R+SL + S
Sbjct: 693 TDVVSVGDIVTVWIEQVDTKKGRISLTMLS 722
[207][TOP]
>UniRef100_C9B562 RNA binding protein S1 n=1 Tax=Enterococcus faecium 1,231,501
RepID=C9B562_ENTFC
Length = 726
Score = 78.2 bits (191), Expect = 3e-13
Identities = 42/90 (46%), Positives = 54/90 (60%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E PA + +ED+K G E GTV V +FGAFV+ G +GLVHISKL+ F K+
Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELKS 378
DVV G VTV + VD +K R+SL + S
Sbjct: 693 TDVVSVGDIVTVWIEQVDTKKGRISLTMLS 722
[208][TOP]
>UniRef100_C7XAY7 RNA-binding protein n=1 Tax=Parabacteroides sp. D13
RepID=C7XAY7_9PORP
Length = 708
Score = 78.2 bits (191), Expect = 3e-13
Identities = 44/97 (45%), Positives = 56/97 (57%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
R +++VFA P + +ED+KEG G VT + FG FV+ G NGLVHIS+L
Sbjct: 616 RQTIQVFAFDPTVKT------IEDLKEGQVLPGIVTNITNFGCFVDVGIKENGLVHISEL 669
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
A F + VV Q V VKVLSVD +KRV L +K
Sbjct: 670 ADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMK 706
[209][TOP]
>UniRef100_C6QU16 RNA binding S1 domain protein n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QU16_9BACI
Length = 728
Score = 78.2 bits (191), Expect = 3e-13
Identities = 43/97 (44%), Positives = 58/97 (59%)
Frame = +1
Query: 82 VRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISK 261
VRP E P +K+ED+K+G E EGTV V +FGAFV+ G +GLVHISK
Sbjct: 620 VRPERDPRDELPKPLLRKDILKMEDLKKGMELEGTVRNVVDFGAFVDIGVKQDGLVHISK 679
Query: 262 LASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 372
L+ + ++ DVV G V V V +VD +K R+SL +
Sbjct: 680 LSKQYVRHPLDVVSVGDVVKVWVDNVDVDKGRISLSM 716
[210][TOP]
>UniRef100_C3A0G0 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Bacillus mycoides DSM 2048
RepID=C3A0G0_BACMY
Length = 722
Score = 78.2 bits (191), Expect = 3e-13
Identities = 39/77 (50%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V
Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[211][TOP]
>UniRef100_C2XNH9 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Bacillus cereus AH603 RepID=C2XNH9_BACCE
Length = 722
Score = 78.2 bits (191), Expect = 3e-13
Identities = 39/77 (50%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V
Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[212][TOP]
>UniRef100_A9VQF5 RNA binding S1 domain protein n=2 Tax=Bacillus cereus group
RepID=A9VQF5_BACWK
Length = 722
Score = 78.2 bits (191), Expect = 3e-13
Identities = 39/77 (50%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V
Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[213][TOP]
>UniRef100_C2PQA5 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Bacillus cereus AH621 RepID=C2PQA5_BACCE
Length = 722
Score = 78.2 bits (191), Expect = 3e-13
Identities = 39/77 (50%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V
Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[214][TOP]
>UniRef100_C2HBI6 S1 domain RNA-binding protein n=2 Tax=Enterococcus faecium
RepID=C2HBI6_ENTFC
Length = 726
Score = 78.2 bits (191), Expect = 3e-13
Identities = 42/90 (46%), Positives = 54/90 (60%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E PA + +ED+K G E GTV V +FGAFV+ G +GLVHISKL+ F K+
Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELKS 378
DVV G VTV + VD +K R+SL + S
Sbjct: 693 TDVVSVGDIVTVWIEQVDTKKGRISLTMLS 722
[215][TOP]
>UniRef100_C2AH79 Transcriptional accessory protein n=1 Tax=Thermomonospora curvata
DSM 43183 RepID=C2AH79_THECU
Length = 810
Score = 78.2 bits (191), Expect = 3e-13
Identities = 42/97 (43%), Positives = 59/97 (60%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP+ + A A E LED+K G EG VT V FGAFV+ G + +GLVHIS +
Sbjct: 657 RPAFKTAAFADGVET------LEDLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHISAM 710
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
+ + + ++VV+PG V V+VL VD +KR+SL L+
Sbjct: 711 SKNYVSDPREVVKPGDIVKVRVLDVDIPRKRISLTLR 747
[216][TOP]
>UniRef100_A4TUT2 Transcriptional accessory protein n=1 Tax=Magnetospirillum
gryphiswaldense RepID=A4TUT2_9PROT
Length = 779
Score = 78.2 bits (191), Expect = 3e-13
Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++D++ G EG VT V FGAFV+ G + +GLVH+S LA F K+ +VV+PG V+VK
Sbjct: 651 MQDLQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKPGDVVSVK 710
Query: 328 VLSVDAEKKRVSLEL-KSAVAAEASAEE 408
VL VD ++KR++L + K+ A A +E
Sbjct: 711 VLEVDLKRKRIALTMRKNDAPAPARPQE 738
[217][TOP]
>UniRef100_UPI0001BBAFC1 RNA-binding protein n=1 Tax=Bacteroides sp. 2_1_33B
RepID=UPI0001BBAFC1
Length = 708
Score = 77.8 bits (190), Expect = 4e-13
Identities = 44/97 (45%), Positives = 56/97 (57%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
R +++VFA P + +ED+KEG G VT + FG FV+ G NGLVHIS+L
Sbjct: 616 RQTIQVFAFDPMVKT------IEDLKEGQVLPGIVTNITNFGCFVDVGIKENGLVHISEL 669
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
A F + VV Q V VKVLSVD +KRV L +K
Sbjct: 670 ADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMK 706
[218][TOP]
>UniRef100_UPI0001B4F31E transcription accessory protein n=1 Tax=Streptomyces hygroscopicus
ATCC 53653 RepID=UPI0001B4F31E
Length = 800
Score = 77.8 bits (190), Expect = 4e-13
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V
Sbjct: 646 KIGDLASGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVRV 705
Query: 325 KVLSVDAEKKRVSLELK 375
KVL VD +KR+SL L+
Sbjct: 706 KVLDVDIPRKRISLTLR 722
[219][TOP]
>UniRef100_Q2KBT4 Probable transcriptional accessory protein (RNA binding S1 domain)
n=1 Tax=Rhizobium etli CFN 42 RepID=Q2KBT4_RHIEC
Length = 769
Score = 77.8 bits (190), Expect = 4e-13
Identities = 38/90 (42%), Positives = 57/90 (63%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+ G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V
Sbjct: 643 EISDLTPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESD 414
+V+ VDA++KR+ L ++ + AS D
Sbjct: 703 RVVEVDAKRKRIGLSMRRDDGSSASQPRGD 732
[220][TOP]
>UniRef100_Q21VK3 RNA binding S1 n=1 Tax=Rhodoferax ferrireducens T118
RepID=Q21VK3_RHOFD
Length = 807
Score = 77.8 bits (190), Expect = 4e-13
Identities = 36/90 (40%), Positives = 59/90 (65%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++D+KEG EGTV+ V FGAFV+ G + +GLVH+S+L+ F +A+++V+ G V V+
Sbjct: 676 IKDLKEGMVLEGTVSNVAAFGAFVDLGVHQDGLVHVSQLSHKFVTDAREIVKTGDIVKVQ 735
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAEESDD 417
V+ VD +KR++L +K A + D+
Sbjct: 736 VVEVDVARKRIALTMKLGAAPSRQSSAGDN 765
[221][TOP]
>UniRef100_C6XJK5 RNA binding S1 domain protein n=1 Tax=Hirschia baltica ATCC 49814
RepID=C6XJK5_HIRBI
Length = 736
Score = 77.8 bits (190), Expect = 4e-13
Identities = 37/89 (41%), Positives = 56/89 (62%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+ G + EGTVT V FGAFV+ G + +GLVHIS+LA F + D+V+ G V V
Sbjct: 648 EISDLNSGMKLEGTVTNVTAFGAFVDIGVHQDGLVHISQLADKFVSDPHDIVKAGDIVNV 707
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEES 411
V+ VD ++KR+ L +KS +++ S
Sbjct: 708 TVMEVDVQRKRIGLSMKSEPELQSNNRRS 736
[222][TOP]
>UniRef100_C1B2S2 Transcriptional accessory protein n=1 Tax=Rhodococcus opacus B4
RepID=C1B2S2_RHOOB
Length = 807
Score = 77.8 bits (190), Expect = 4e-13
Identities = 42/102 (41%), Positives = 59/102 (57%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E A AA K+ +K G EG VT V FGAFV+ G + +GLVH+S ++ F K+
Sbjct: 621 EFKTATFAAGIEKVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDP 680
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESD 414
+DVV+ G VTVKVL VD ++R+ L L+ A ++D
Sbjct: 681 RDVVKSGDVVTVKVLEVDEARQRIGLTLRLDDEVGAGGRKND 722
[223][TOP]
>UniRef100_B9M315 RNA binding S1 domain protein n=1 Tax=Geobacter sp. FRC-32
RepID=B9M315_GEOSF
Length = 756
Score = 77.8 bits (190), Expect = 4e-13
Identities = 37/76 (48%), Positives = 54/76 (71%)
Frame = +1
Query: 154 DVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVL 333
D++EG +GTVT V FGAFV+ G + +GLVH+S L+ F + A + V+ G+ V VKVL
Sbjct: 645 DLQEGMILQGTVTNVAAFGAFVDIGVHQDGLVHVSHLSRRFVREASEAVKVGEIVKVKVL 704
Query: 334 SVDAEKKRVSLELKSA 381
+VD ++KR+SL +K A
Sbjct: 705 AVDLQRKRISLSIKEA 720
[224][TOP]
>UniRef100_B1WZ45 Probable RNA binding S1 protein n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WZ45_CYAA5
Length = 718
Score = 77.8 bits (190), Expect = 4e-13
Identities = 36/77 (46%), Positives = 55/77 (71%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D++EG EG +T V FGAFV+ G + +GL+HIS+LA+ F + K+VV+ G+ V V
Sbjct: 640 EINDLREGMILEGVITNVVNFGAFVDIGVHQDGLIHISQLANYFVSDPKEVVKVGEVVKV 699
Query: 325 KVLSVDAEKKRVSLELK 375
KVL +D + KR+SL +K
Sbjct: 700 KVLEIDEKLKRISLSMK 716
[225][TOP]
>UniRef100_B0UJU3 RNA binding S1 domain protein n=1 Tax=Methylobacterium sp. 4-46
RepID=B0UJU3_METS4
Length = 776
Score = 77.8 bits (190), Expect = 4e-13
Identities = 48/121 (39%), Positives = 66/121 (54%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RPS R + E + D+K G EG VT V FGAFV+ G + +GLVHIS L
Sbjct: 630 RPSFRTASFQEGVET------IGDLKPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHISAL 683
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 444
++ F ++ + VV+PG V VKVL VD +KR+SL ++ A +A P R+G
Sbjct: 684 SNSFVRDPRAVVKPGDVVRVKVLDVDVPRKRISLTMRLDDAPQA----------RPGRDG 733
Query: 445 A 447
A
Sbjct: 734 A 734
[226][TOP]
>UniRef100_A8MJM7 RNA binding S1 domain protein n=1 Tax=Alkaliphilus oremlandii
OhILAs RepID=A8MJM7_ALKOO
Length = 718
Score = 77.8 bits (190), Expect = 4e-13
Identities = 38/89 (42%), Positives = 57/89 (64%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P + +K+ED+K GTV V +FGAFV+ G +GLVH+S+L++ F KNA
Sbjct: 627 EMPKPLFKSDVLKMEDLKLDMIMPGTVRNVVDFGAFVDIGVKQDGLVHVSELSNRFVKNA 686
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
DVV G +V VK++ +D E+ ++SL +K
Sbjct: 687 MDVVSVGDEVKVKIIGLDIERGKISLSIK 715
[227][TOP]
>UniRef100_A6TLF6 RNA binding S1 domain protein n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TLF6_ALKMQ
Length = 728
Score = 77.8 bits (190), Expect = 4e-13
Identities = 38/89 (42%), Positives = 56/89 (62%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P + +K+ED+K GTV V +FGAFV+ G +GLVH+S+L++ F KN
Sbjct: 637 EMPMPIFRSDVLKMEDLKLDMVMTGTVRNVVDFGAFVDIGVKQDGLVHVSQLSNKFVKNP 696
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
DVV G +V VK++ +D E+ +VSL +K
Sbjct: 697 MDVVSVGDEVEVKIIGIDVERGKVSLSMK 725
[228][TOP]
>UniRef100_C5V4H3 RNA binding S1 domain protein n=1 Tax=Gallionella ferruginea ES-2
RepID=C5V4H3_9PROT
Length = 779
Score = 77.8 bits (190), Expect = 4e-13
Identities = 42/105 (40%), Positives = 63/105 (60%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D++ EG VT V FGAFV+ G + +GLVHIS LA+ F K+ VV+ GQ V V
Sbjct: 656 KISDLQPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALANSFVKDPHTVVKAGQIVKV 715
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATD 459
KVL VD ++KR++L ++ A AA + + + P G + ++
Sbjct: 716 KVLEVDEKRKRIALTMRLADAAPKADAKPRETKRPPVHRGQEKSE 760
[229][TOP]
>UniRef100_B4B1E7 RNA binding S1 domain protein n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4B1E7_9CHRO
Length = 718
Score = 77.8 bits (190), Expect = 4e-13
Identities = 38/80 (47%), Positives = 55/80 (68%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+++ D+KEG E EG VT V FGAFV+ G + +GLVHIS+LA F + VV+ GQ V
Sbjct: 638 MEISDLKEGMELEGIVTNVVNFGAFVDVGVHQDGLVHISQLADHFVSDPNQVVKVGQVVK 697
Query: 322 VKVLSVDAEKKRVSLELKSA 381
V+V+ V+ + KR+ L +K+A
Sbjct: 698 VRVMEVNEKLKRIGLSMKAA 717
[230][TOP]
>UniRef100_A6UPD5 RNA binding S1 domain protein n=1 Tax=Methanococcus vannielii SB
RepID=A6UPD5_METVS
Length = 722
Score = 77.8 bits (190), Expect = 4e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+K ED+KEG +GT+ + +FGAFV+ G + +GL+HIS+++ F K+ +V+ G V
Sbjct: 640 LKFEDLKEGMILKGTIRNIVDFGAFVDIGVHHDGLIHISEVSDRFIKHPLEVISVGDVVN 699
Query: 322 VKVLSVDAEKKRVSLELKSAV 384
V VL +D EK RVSL +K A+
Sbjct: 700 VFVLGIDFEKNRVSLSIKKAI 720
[231][TOP]
>UniRef100_A0LE14 Polyribonucleotide nucleotidyltransferase n=1 Tax=Magnetococcus sp.
MC-1 RepID=PNP_MAGSM
Length = 701
Score = 77.8 bits (190), Expect = 4e-13
Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Frame = +1
Query: 106 AEAPAAEQAAKAIK--LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFT 279
++ +AEQA K IK + +V++G YEG V + +FGAFVN N +GLVHIS+LA+
Sbjct: 603 SDQASAEQAVKIIKSIVAEVEKGQVYEGKVVRITDFGAFVNILPNKDGLVHISQLANRRV 662
Query: 280 KNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
+N DVV+ G VTVKVL VD + RV L +K
Sbjct: 663 QNVTDVVKEGDVVTVKVLDVD-RQGRVKLTMK 693
[232][TOP]
>UniRef100_UPI0001B4186F S1 RNA binding domain protein n=1 Tax=Bacillus anthracis str.
Australia 94 RepID=UPI0001B4186F
Length = 722
Score = 77.4 bits (189), Expect = 5e-13
Identities = 40/77 (51%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[233][TOP]
>UniRef100_Q73ET3 S1 RNA binding domain protein n=1 Tax=Bacillus cereus ATCC 10987
RepID=Q73ET3_BACC1
Length = 722
Score = 77.4 bits (189), Expect = 5e-13
Identities = 40/77 (51%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[234][TOP]
>UniRef100_Q67K87 Ribosomal protein S1-like RNA-binding domain n=1
Tax=Symbiobacterium thermophilum RepID=Q67K87_SYMTH
Length = 764
Score = 77.4 bits (189), Expect = 5e-13
Identities = 38/89 (42%), Positives = 57/89 (64%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E P +KLED++ G E GTV V +FGAFV+ G + +GLVH+S+L+ + K+
Sbjct: 632 ELPQPIFRTDVLKLEDLQVGMELMGTVRNVVDFGAFVDIGVHEDGLVHVSQLSHKYVKHP 691
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
+VVQ G V VKV+ VD +++R+ L +K
Sbjct: 692 SEVVQVGDVVRVKVIEVDLKRQRIGLSMK 720
[235][TOP]
>UniRef100_Q63GW7 Probable transcription accessory protein, S1 RNA-binding domain n=1
Tax=Bacillus cereus E33L RepID=Q63GW7_BACCZ
Length = 724
Score = 77.4 bits (189), Expect = 5e-13
Identities = 40/77 (51%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V
Sbjct: 644 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 703
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 704 VWVDDIDTKKGRVALSM 720
[236][TOP]
>UniRef100_Q1GIT0 RNA binding S1 n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GIT0_SILST
Length = 814
Score = 77.4 bits (189), Expect = 5e-13
Identities = 38/89 (42%), Positives = 56/89 (62%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ ++V+ GQ V V
Sbjct: 670 EITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEIVKTGQVVKV 729
Query: 325 KVLSVDAEKKRVSLELKSAVAAEASAEES 411
V+ VD +KR+ L +K A A + +
Sbjct: 730 TVVEVDVPRKRIGLTMKKDGGASAREDRA 758
[237][TOP]
>UniRef100_Q0VSY6 S1 RNA binding domain protein n=1 Tax=Alcanivorax borkumensis SK2
RepID=Q0VSY6_ALCBS
Length = 790
Score = 77.4 bits (189), Expect = 5e-13
Identities = 38/76 (50%), Positives = 52/76 (68%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
L+D+K+ EGTVT V FGAFV+ G + +GLVH+S LA F ++ VV PG V VK
Sbjct: 644 LKDLKQNMILEGTVTNVTNFGAFVDVGVHQDGLVHVSALADKFVEDPHQVVAPGDIVKVK 703
Query: 328 VLSVDAEKKRVSLELK 375
VL VD ++KR+SL ++
Sbjct: 704 VLDVDLDRKRISLTMR 719
[238][TOP]
>UniRef100_Q0RTD4 Putative transcriptional accessory protein n=1 Tax=Frankia alni
ACN14a RepID=Q0RTD4_FRAAA
Length = 895
Score = 77.4 bits (189), Expect = 5e-13
Identities = 42/97 (43%), Positives = 57/97 (58%)
Frame = +1
Query: 85 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 264
RP+ R A E A D+ G EGTVT V FGAFV+ G + +GLVH+S +
Sbjct: 641 RPAFRTAAFTEGIETLA------DLVPGMTLEGTVTNVAAFGAFVDVGVHQDGLVHVSAM 694
Query: 265 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
+ F + ++V +PG VTVKVL VD +KR+SL L+
Sbjct: 695 SKNFVSDPREVAKPGDIVTVKVLDVDIPRKRISLTLR 731
[239][TOP]
>UniRef100_C1EUA0 S1 RNA binding domain protein n=1 Tax=Bacillus cereus 03BB102
RepID=C1EUA0_BACC3
Length = 722
Score = 77.4 bits (189), Expect = 5e-13
Identities = 40/77 (51%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[240][TOP]
>UniRef100_B8HZ35 RNA binding S1 domain protein n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HZ35_CYAP4
Length = 763
Score = 77.4 bits (189), Expect = 5e-13
Identities = 40/91 (43%), Positives = 56/91 (61%)
Frame = +1
Query: 106 AEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 285
AE A A + D+ G + EG VT V FGAFV+ G + +GLVH+S+LA F +
Sbjct: 626 AEFTFARFRADVKAISDLSVGMQLEGMVTNVANFGAFVDIGVHQDGLVHVSQLADRFVSD 685
Query: 286 AKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 378
K +V+ GQ V V+VL VD + KR+SL ++S
Sbjct: 686 PKQIVKVGQVVNVRVLEVDEKLKRISLSMRS 716
[241][TOP]
>UniRef100_B2UZM1 Protein tex n=1 Tax=Clostridium botulinum E3 str. Alaska E43
RepID=B2UZM1_CLOBA
Length = 725
Score = 77.4 bits (189), Expect = 5e-13
Identities = 39/89 (43%), Positives = 57/89 (64%)
Frame = +1
Query: 109 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 288
E PA I+L+D+K G GTV V +FGAFV+ G + +GLVH S++A+ F K+
Sbjct: 629 EMPAPILKTGIIELKDLKPGMVLNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHP 688
Query: 289 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 375
D+V+ G V V +L VD ++KR+SL +K
Sbjct: 689 LDIVKVGDIVKVSILEVDQKRKRISLSMK 717
[242][TOP]
>UniRef100_B1ZSU7 RNA binding S1 domain protein n=1 Tax=Opitutus terrae PB90-1
RepID=B1ZSU7_OPITP
Length = 794
Score = 77.4 bits (189), Expect = 5e-13
Identities = 38/76 (50%), Positives = 53/76 (69%)
Frame = +1
Query: 151 EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKV 330
+D+K G + G VT V FGAFV+ G + +GLVHIS+LA F K+A VV+P QKVTV V
Sbjct: 660 KDLKPGMKLPGIVTNVTAFGAFVDIGVHQDGLVHISQLADTFVKDAATVVKPQQKVTVTV 719
Query: 331 LSVDAEKKRVSLELKS 378
+ VD + R++L ++S
Sbjct: 720 VEVDLARNRIALSMRS 735
[243][TOP]
>UniRef100_A6U7B2 RNA binding S1 domain protein n=1 Tax=Sinorhizobium medicae WSM419
RepID=A6U7B2_SINMW
Length = 768
Score = 77.4 bits (189), Expect = 5e-13
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +1
Query: 148 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 327
++D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V+
Sbjct: 644 IKDLKVGMRLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVHVR 703
Query: 328 VLSVDAEKKRVSLELKSAVAAEASAE 405
V VD +KR+ L ++ AE E
Sbjct: 704 VTEVDVARKRIGLSMRKEGGAETPRE 729
[244][TOP]
>UniRef100_A5U9S2 Transcription elongation factor GreB n=1 Tax=Haemophilus influenzae
PittEE RepID=A5U9S2_HAEIE
Length = 770
Score = 77.4 bits (189), Expect = 5e-13
Identities = 50/142 (35%), Positives = 72/142 (50%)
Frame = +1
Query: 34 RPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGA 213
+P R P G + A VFAE ++ D+K G EGTVT V FGA
Sbjct: 624 KPGRDPRGEFKTA---------VFAEGVE--------EITDLKSGMILEGTVTNVTNFGA 666
Query: 214 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAE 393
FV+ G + +GLVHIS L+ F ++ VV+ G V VKVL VD +KR++L ++ +A
Sbjct: 667 FVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRLDESAV 726
Query: 394 ASAEESDDIITEPDREGADATD 459
+ +SD ++ R D
Sbjct: 727 KNDSKSDRTLSARPRGNTQRED 748
[245][TOP]
>UniRef100_Q4MPT2 S1 RNA binding domain protein n=1 Tax=Bacillus cereus G9241
RepID=Q4MPT2_BACCE
Length = 722
Score = 77.4 bits (189), Expect = 5e-13
Identities = 40/77 (51%), Positives = 52/77 (67%)
Frame = +1
Query: 142 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 321
+KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701
Query: 322 VKVLSVDAEKKRVSLEL 372
V V +D +K RV+L +
Sbjct: 702 VWVDDIDTKKGRVALSM 718
[246][TOP]
>UniRef100_Q19V19 HI0568-like protein n=1 Tax=Haemophilus influenzae
RepID=Q19V19_HAEIN
Length = 770
Score = 77.4 bits (189), Expect = 5e-13
Identities = 50/142 (35%), Positives = 72/142 (50%)
Frame = +1
Query: 34 RPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGA 213
+P R P G + A VFAE ++ D+K G EGTVT V FGA
Sbjct: 624 KPGRDPRGEFKTA---------VFAEGVE--------EITDLKSGMILEGTVTNVTNFGA 666
Query: 214 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAE 393
FV+ G + +GLVHIS L+ F ++ VV+ G V VKVL VD +KR++L ++ +A
Sbjct: 667 FVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRLDESAV 726
Query: 394 ASAEESDDIITEPDREGADATD 459
+ +SD ++ R D
Sbjct: 727 KNDSKSDRTLSARPRGNTQRED 748
[247][TOP]
>UniRef100_C9Z848 Putative transcriptional accessory protein n=1 Tax=Streptomyces
scabiei 87.22 RepID=C9Z848_STRSC
Length = 794
Score = 77.4 bits (189), Expect = 5e-13
Identities = 37/77 (48%), Positives = 51/77 (66%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
K+ D+ G EG VT V FGAF++ G + +GL H+S L+ F K+ +DVV+PG V V
Sbjct: 651 KISDLVSGMVLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKTFVKDPRDVVKPGDIVKV 710
Query: 325 KVLSVDAEKKRVSLELK 375
KVL VD +KR+SL L+
Sbjct: 711 KVLDVDIPRKRISLTLR 727
[248][TOP]
>UniRef100_C9NGA0 RNA binding S1 domain protein n=1 Tax=Streptomyces flavogriseus
ATCC 33331 RepID=C9NGA0_9ACTO
Length = 808
Score = 77.4 bits (189), Expect = 5e-13
Identities = 39/77 (50%), Positives = 52/77 (67%)
Frame = +1
Query: 145 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 324
KL D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V
Sbjct: 644 KLGDLVPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKV 703
Query: 325 KVLSVDAEKKRVSLELK 375
KV+ VD +KRVSL L+
Sbjct: 704 KVMDVDIPRKRVSLTLR 720
[249][TOP]
>UniRef100_C8N9I1 Histidine triad domain-containing protein n=1 Tax=Cardiobacterium
hominis ATCC 15826 RepID=C8N9I1_9GAMM
Length = 769
Score = 77.4 bits (189), Expect = 5e-13
Identities = 47/125 (37%), Positives = 69/125 (55%)
Frame = +1
Query: 34 RPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGA 213
+P R P G Q A FAE ++ D++ G EG V+ V FGA
Sbjct: 632 KPGRDPRGEFQTA---------TFAEG--------VHEISDLQPGMILEGVVSNVANFGA 674
Query: 214 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAE 393
FV+ G + +GLVHIS LA + ++ +D+V+ G V VKVL VDAE+KR++L ++ A
Sbjct: 675 FVDIGVHQDGLVHISALADRYVQDPRDIVKAGDVVKVKVLEVDAERKRIALTMRLDDDAT 734
Query: 394 ASAEE 408
AS ++
Sbjct: 735 ASGKK 739
[250][TOP]
>UniRef100_C4EZU3 Transcription elongation factor GreB n=1 Tax=Haemophilus influenzae
7P49H1 RepID=C4EZU3_HAEIN
Length = 770
Score = 77.4 bits (189), Expect = 5e-13
Identities = 50/142 (35%), Positives = 72/142 (50%)
Frame = +1
Query: 34 RPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGA 213
+P R P G + A VFAE ++ D+K G EGTVT V FGA
Sbjct: 624 KPGRDPRGEFKTA---------VFAEGVE--------EITDLKSGMILEGTVTNVTNFGA 666
Query: 214 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAE 393
FV+ G + +GLVHIS L+ F ++ VV+ G V VKVL VD +KR++L ++ +A
Sbjct: 667 FVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIALTMRLDESAV 726
Query: 394 ASAEESDDIITEPDREGADATD 459
+ +SD ++ R D
Sbjct: 727 KNDSKSDRTLSARPRGNTQRED 748