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[1][TOP] >UniRef100_A8J8B2 Plastid-specific ribosomal protein 1 n=1 Tax=Chlamydomonas reinhardtii RepID=A8J8B2_CHLRE Length = 286 Score = 218 bits (554), Expect(2) = 2e-77 Identities = 108/108 (100%), Positives = 108/108 (100%) Frame = +3 Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC Sbjct: 98 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 157 Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL 326 DKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL Sbjct: 158 DKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL 205 Score = 95.5 bits (236), Expect(2) = 2e-77 Identities = 51/53 (96%), Positives = 51/53 (96%), Gaps = 1/53 (1%) Frame = +1 Query: 325 LFDKEEQLQRQFAELNRI*PANVMRSKTVVL-DPITVEEAIDALEAVGHSFYV 480 LFDKEEQLQRQFAELNRI PANVMRSKTVVL DPITVEEAIDALEAVGHSFYV Sbjct: 205 LFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 257 [2][TOP] >UniRef100_Q5MCR1 Chloroplast-specific ribosome-associated protein n=1 Tax=Volvox carteri f. nagariensis RepID=Q5MCR1_VOLCA Length = 232 Score = 173 bits (438), Expect = 6e-42 Identities = 88/132 (66%), Positives = 107/132 (81%) Frame = +3 Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185 NF+HTLKEVDVTLSARGGDTGTHGKKEQKV+VTI+TLRNGVVRVED E+NLYAAIDLVCD Sbjct: 103 NFAHTLKEVDVTLSARGGDTGTHGKKEQKVDVTIFTLRNGVVRVEDRESNLYAAIDLVCD 162 Query: 186 KIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLV*QGGAAAAPVRR 365 KIR+KL ++KEKAI++G WPG+AGPKE+V+ + +++TQ + QGG A+ V Sbjct: 163 KIRSKLTRVKEKAITKGKWPGKAGPKENVEGRRTSKSTSRCQVETQCL-QGGRASEAVAE 221 Query: 366 AEPHLTRQRHAL 401 T+QRHAL Sbjct: 222 LTA-TTQQRHAL 232 [3][TOP] >UniRef100_B9SEK8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SEK8_RICCO Length = 311 Score = 73.2 bits (178), Expect(2) = 4e-15 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 17/116 (14%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH ++EVDV LS RGG+ G G K ++ EVT++T ++GV+R E+ +YA+IDLV I Sbjct: 119 SHLVREVDVRLSVRGGEFGK-GPKIRRCEVTLFTKKHGVIRAEEDAETIYASIDLVSSII 177 Query: 192 RAKLQKIKEKAISRGAW-----------PGRAGPKEDVDE------EDFQEYLKEV 308 + KL+KIKEK G P K+D DE ++ ++Y+ EV Sbjct: 178 QRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDEDEDYIDEV 233 Score = 31.6 bits (70), Expect(2) = 4e-15 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = +1 Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFY 477 V+R+K + P+TV EAI+ L+ V H FY Sbjct: 233 VVRTKYFDMPPLTVSEAIEQLKNVDHDFY 261 [4][TOP] >UniRef100_A9TA00 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TA00_PHYPA Length = 297 Score = 74.7 bits (182), Expect(2) = 1e-14 Identities = 41/86 (47%), Positives = 58/86 (67%) Frame = +3 Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185 N S +KEVDV +S RGG+TG G++ Q+ EVT++T ++GVVR E+ ++YA+ID V D Sbjct: 117 NQSALVKEVDVRMSVRGGETG-RGERLQRCEVTLFTKKHGVVRAEEEAESMYASIDRVSD 175 Query: 186 KIRAKLQKIKEKAISRGAWPGRAGPK 263 I KL+KIKEK G P + P+ Sbjct: 176 VISRKLRKIKEKDGGHGR-PAKYSPR 200 Score = 28.1 bits (61), Expect(2) = 1e-14 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFY 477 P V+R+K + P+ EA++ L VGH FY Sbjct: 224 PDEVVRTKYFEMRPMKPLEALEQLVNVGHDFY 255 [5][TOP] >UniRef100_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LMC5_PICSI Length = 321 Score = 72.4 bits (176), Expect(2) = 5e-14 Identities = 43/104 (41%), Positives = 62/104 (59%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 ++ ++EVDV LS RGG+ G G K ++ EVT++T ++GVVR E+ +YA+ID+V D I Sbjct: 119 ANLVREVDVRLSIRGGEVGK-GPKIRRCEVTLFTKKHGVVRAEEEAETIYASIDIVSDII 177 Query: 192 RAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQ 323 R KL+KIKEK G P + + E L V MD + Sbjct: 178 RRKLRKIKEKD------GGHGRPSKMRKQPKLGELLSTVVMDVK 215 Score = 28.5 bits (62), Expect(2) = 5e-14 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +1 Query: 325 LFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFY 477 L D EE + +L+ V+R+K + P++ EEA++ L V H FY Sbjct: 225 LADVEEMRYEKIDDLSD----EVVRTKYFEMPPMSPEEALEQLMNVDHDFY 271 [6][TOP] >UniRef100_C1EFG3 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFG3_9CHLO Length = 284 Score = 79.7 bits (195), Expect = 9e-14 Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 6/107 (5%) Frame = +3 Query: 15 HTLKEVDVTLSARGG-DTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 H ++EVDV S+RGG D T G QK EVT+YT RNG++R E+ ++LYA+ID V DK+ Sbjct: 113 HDVREVDVRCSSRGGADKKTPGGALQKTEVTVYT-RNGIIRSEEEADDLYASIDAVSDKL 171 Query: 192 RAKLQKIKEKAISRGAWPGRAGPKEDVDE--EDFQ---EYLKEVKMD 317 KL+K+KEK IS+ + PK D E+ Q E L + MD Sbjct: 172 ERKLRKVKEKKISKRPKHNKNAPKAQTDAIVEEMQAADEALADESMD 218 [7][TOP] >UniRef100_P19954 30S ribosomal protein 1, chloroplastic n=1 Tax=Spinacia oleracea RepID=RR30_SPIOL Length = 302 Score = 75.1 bits (183), Expect = 2e-12 Identities = 39/78 (50%), Positives = 55/78 (70%) Frame = +3 Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182 A SH ++EVDV LSARGGD + G K ++ EVT++T R+GV+R E+ +LY++IDLV Sbjct: 103 AKHSHLVREVDVRLSARGGDL-SKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVS 161 Query: 183 DKIRAKLQKIKEKAISRG 236 I+ KL+KIK+K G Sbjct: 162 SIIQRKLRKIKDKVSDHG 179 [8][TOP] >UniRef100_C1N7A9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N7A9_9CHLO Length = 245 Score = 73.9 bits (180), Expect = 5e-12 Identities = 44/83 (53%), Positives = 54/83 (65%) Frame = +3 Query: 15 HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIR 194 H ++EVDVT SAR G Q +VT+YT RNGVVR E+ +NLYA+ID V DKI Sbjct: 79 HDVREVDVTCSARSEKQ--QGGDLQMTQVTVYT-RNGVVRSEEEADNLYASIDAVSDKIE 135 Query: 195 AKLQKIKEKAISRGAWPGRAGPK 263 KL+KIKEK S+ A +A PK Sbjct: 136 RKLRKIKEKKNSKKAGKTKANPK 158 [9][TOP] >UniRef100_A9RWK9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RWK9_PHYPA Length = 221 Score = 73.6 bits (179), Expect = 7e-12 Identities = 39/72 (54%), Positives = 52/72 (72%) Frame = +3 Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185 N S +KEVDV +S RGG+TG GK Q+ EVT++T ++GVVR E+ ++YA+ID V D Sbjct: 39 NQSALVKEVDVRMSVRGGETGRGGKL-QRCEVTLFTKKHGVVRAEEEAESMYASIDRVSD 97 Query: 186 KIRAKLQKIKEK 221 I KL+KIKEK Sbjct: 98 VISRKLRKIKEK 109 [10][TOP] >UniRef100_B9I297 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I297_POPTR Length = 306 Score = 72.4 bits (176), Expect = 1e-11 Identities = 38/75 (50%), Positives = 52/75 (69%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH ++EVDV LS RGG+ G G + ++ EVT++T R+GVVR E+ +YA+IDLV I Sbjct: 117 SHLVREVDVRLSVRGGELGK-GPRIRRCEVTLFTNRHGVVRAEEDAETIYASIDLVSSII 175 Query: 192 RAKLQKIKEKAISRG 236 + KL+KIKEK G Sbjct: 176 QRKLRKIKEKESDHG 190 [11][TOP] >UniRef100_Q672Q2 Chloroplast-specific ribosomal protein n=1 Tax=Solanum lycopersicum RepID=Q672Q2_SOLLC Length = 311 Score = 70.9 bits (172), Expect = 4e-11 Identities = 36/75 (48%), Positives = 52/75 (69%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH +EVDV LS RGG+ G G K ++ EVT++T ++GV+R E+ ++Y +ID+V I Sbjct: 116 SHLAREVDVRLSVRGGELGK-GPKIRRCEVTLFTKKHGVIRAEEDGESIYGSIDMVSSII 174 Query: 192 RAKLQKIKEKAISRG 236 + KL+KIKEK RG Sbjct: 175 QRKLRKIKEKDSDRG 189 [12][TOP] >UniRef100_C6TFU4 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TFU4_SOYBN Length = 208 Score = 70.9 bits (172), Expect = 4e-11 Identities = 36/75 (48%), Positives = 49/75 (65%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH ++EVDV LS RGG G + ++ EVT++T R+GVVR E+ + Y +IDLV I Sbjct: 101 SHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSII 160 Query: 192 RAKLQKIKEKAISRG 236 + KL+KIKEK G Sbjct: 161 QRKLRKIKEKVSDHG 175 [13][TOP] >UniRef100_C6T7E3 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T7E3_SOYBN Length = 291 Score = 70.9 bits (172), Expect = 4e-11 Identities = 36/75 (48%), Positives = 49/75 (65%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH ++EVDV LS RGG G + ++ EVT++T R+GVVR E+ + Y +IDLV I Sbjct: 101 SHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSII 160 Query: 192 RAKLQKIKEKAISRG 236 + KL+KIKEK G Sbjct: 161 QRKLRKIKEKVSDHG 175 [14][TOP] >UniRef100_UPI0001984F94 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001984F94 Length = 298 Score = 70.5 bits (171), Expect = 6e-11 Identities = 37/75 (49%), Positives = 51/75 (68%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH ++EVDV LS RGG+ G G K ++ EVT++T ++GVVR E+ LY +ID+V I Sbjct: 109 SHLVREVDVRLSIRGGELGK-GPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSII 167 Query: 192 RAKLQKIKEKAISRG 236 + KL+KIKEK G Sbjct: 168 QRKLRKIKEKDSDHG 182 [15][TOP] >UniRef100_A7QEV5 Chromosome chr16 scaffold_86, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7QEV5_VITVI Length = 230 Score = 70.5 bits (171), Expect = 6e-11 Identities = 37/75 (49%), Positives = 51/75 (68%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH ++EVDV LS RGG+ G G K ++ EVT++T ++GVVR E+ LY +ID+V I Sbjct: 41 SHLVREVDVRLSIRGGELGK-GPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSII 99 Query: 192 RAKLQKIKEKAISRG 236 + KL+KIKEK G Sbjct: 100 QRKLRKIKEKDSDHG 114 [16][TOP] >UniRef100_Q9FLV3 Similarity to ribosomal protein 30S subunit n=2 Tax=Arabidopsis thaliana RepID=Q9FLV3_ARATH Length = 365 Score = 69.7 bits (169), Expect = 1e-10 Identities = 37/75 (49%), Positives = 51/75 (68%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH ++EVDV LS RGG+ G G + ++ EVT++T ++GVVR E+ +YA IDLV I Sbjct: 170 SHLVREVDVRLSVRGGEFGK-GPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTII 228 Query: 192 RAKLQKIKEKAISRG 236 + KL+KIKEK G Sbjct: 229 QRKLRKIKEKDSDHG 243 [17][TOP] >UniRef100_Q84M68 Os03g0856500 protein n=3 Tax=Oryza sativa RepID=Q84M68_ORYSJ Length = 309 Score = 69.7 bits (169), Expect = 1e-10 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 7/110 (6%) Frame = +3 Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182 A S +KEVDV LSARGG+ + G K + E+T++T R+GV+R E+ + YA+IDL Sbjct: 109 AKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLAS 167 Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVK 311 I+ KL+KIKEK G P D +++D Q LK+++ Sbjct: 168 SIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLE 217 [18][TOP] >UniRef100_Q10AC8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative, expressed n=1 Tax=Oryza sativa Japonica Group RepID=Q10AC8_ORYSJ Length = 241 Score = 69.7 bits (169), Expect = 1e-10 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 7/110 (6%) Frame = +3 Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182 A S +KEVDV LSARGG+ + G K + E+T++T R+GV+R E+ + YA+IDL Sbjct: 109 AKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLAS 167 Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVK 311 I+ KL+KIKEK G P D +++D Q LK+++ Sbjct: 168 SIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLE 217 [19][TOP] >UniRef100_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group RepID=C6YXL0_ORYSJ Length = 321 Score = 69.7 bits (169), Expect = 1e-10 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 7/110 (6%) Frame = +3 Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182 A S +KEVDV LSARGG+ + G K + E+T++T R+GV+R E+ + YA+IDL Sbjct: 109 AKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLAS 167 Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVK 311 I+ KL+KIKEK G P D +++D Q LK+++ Sbjct: 168 SIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLE 217 [20][TOP] >UniRef100_C9EFD1 Chloroplast ribosomal protein (Fragment) n=1 Tax=Solanum tuberosum RepID=C9EFD1_SOLTU Length = 280 Score = 69.3 bits (168), Expect = 1e-10 Identities = 35/75 (46%), Positives = 51/75 (68%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH +EVDV LS RGG+ G G K ++ EVT++T ++GV+R E+ ++Y +ID+V I Sbjct: 88 SHLAREVDVRLSVRGGELGK-GPKIRRCEVTLFTKKHGVIRAEEDAESIYGSIDMVSSII 146 Query: 192 RAKLQKIKEKAISRG 236 + KL+KIKEK G Sbjct: 147 QRKLRKIKEKDSDHG 161 [21][TOP] >UniRef100_B6TYP8 Plastid-specific 30S ribosomal protein 1 n=1 Tax=Zea mays RepID=B6TYP8_MAIZE Length = 309 Score = 69.3 bits (168), Expect = 1e-10 Identities = 34/69 (49%), Positives = 49/69 (71%) Frame = +3 Query: 15 HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIR 194 H ++EVDV LSARGG+ G G K + E+T++T R+GV+R E+ + YA+IDL ++ Sbjct: 104 HLVREVDVRLSARGGELG-RGPKTSRCEITLFTKRHGVLRAEEDAESTYASIDLAAAIVK 162 Query: 195 AKLQKIKEK 221 KL+KIKEK Sbjct: 163 RKLRKIKEK 171 [22][TOP] >UniRef100_A9PJW3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa x Populus deltoides RepID=A9PJW3_9ROSI Length = 268 Score = 68.6 bits (166), Expect = 2e-10 Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 14/113 (12%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH ++ VDV LS RGG+ G G + ++ EVT++T R+GVVR E+ +YA+IDL I Sbjct: 116 SHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETIYASIDLASSII 174 Query: 192 RAKLQKIKEKAISRGAW-----------PGRAGPKEDVDE---EDFQEYLKEV 308 + KL+KIK+K G P ++D DE ++ ++Y++EV Sbjct: 175 QRKLRKIKDKESDHGRHMKGFNRLKVREPMHQVVEDDADEVSQQEDEDYIEEV 227 [23][TOP] >UniRef100_UPI00017F5F53 putative RNA-binding protein n=1 Tax=Clostridium difficile QCD-23m63 RepID=UPI00017F5F53 Length = 183 Score = 58.9 bits (141), Expect(2) = 2e-10 Identities = 31/72 (43%), Positives = 45/72 (62%) Frame = +3 Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185 N+ H +V VT+SAR K QK+EVTI T+ ++R ED + NLY AID+V D Sbjct: 29 NYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD 80 Query: 186 KIRAKLQKIKEK 221 K+ +L+K K++ Sbjct: 81 KLSKQLKKYKKR 92 Score = 29.6 bits (65), Expect(2) = 2e-10 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +1 Query: 319 LSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 ++L D++E + EL + R K + P++ EEA+ +E +GH FY+ Sbjct: 110 INLADEQEDYGDENQELV------IQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157 [24][TOP] >UniRef100_C9XIR4 Putative RNA-binding protein n=3 Tax=Clostridium difficile RepID=C9XIR4_CLODI Length = 183 Score = 58.9 bits (141), Expect(2) = 2e-10 Identities = 31/72 (43%), Positives = 45/72 (62%) Frame = +3 Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185 N+ H +V VT+SAR K QK+EVTI T+ ++R ED + NLY AID+V D Sbjct: 29 NYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD 80 Query: 186 KIRAKLQKIKEK 221 K+ +L+K K++ Sbjct: 81 KLSKQLKKYKKR 92 Score = 29.6 bits (65), Expect(2) = 2e-10 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +1 Query: 319 LSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 ++L D++E + EL + R K + P++ EEA+ +E +GH FY+ Sbjct: 110 INLADEQEDYGDENQELV------IQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157 [25][TOP] >UniRef100_Q18CN1 Putative RNA-binding protein n=1 Tax=Clostridium difficile 630 RepID=Q18CN1_CLOD6 Length = 183 Score = 58.9 bits (141), Expect(2) = 2e-10 Identities = 31/72 (43%), Positives = 45/72 (62%) Frame = +3 Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185 N+ H +V VT+SAR K QK+EVTI T+ ++R ED + NLY AID+V D Sbjct: 29 NYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD 80 Query: 186 KIRAKLQKIKEK 221 K+ +L+K K++ Sbjct: 81 KLSKQLKKYKKR 92 Score = 29.6 bits (65), Expect(2) = 2e-10 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +1 Query: 319 LSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 ++L D++E + EL + R K + P++ EEA+ +E +GH FY+ Sbjct: 110 INLADEQEDYGDENQELV------IQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157 [26][TOP] >UniRef100_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum bicolor RepID=C5WRX8_SORBI Length = 310 Score = 68.2 bits (165), Expect = 3e-10 Identities = 34/69 (49%), Positives = 49/69 (71%) Frame = +3 Query: 15 HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIR 194 H ++EVDV LSARGG+ G G K + E+T+++ R+GV+R E+ + YA+IDL I+ Sbjct: 104 HLVREVDVRLSARGGELG-RGPKTSRCEITLFSKRHGVLRAEEDAESTYASIDLAAAIIK 162 Query: 195 AKLQKIKEK 221 KL+KIKEK Sbjct: 163 RKLRKIKEK 171 [27][TOP] >UniRef100_Q2JS19 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp. JA-3-3Ab RepID=Q2JS19_SYNJA Length = 191 Score = 50.8 bits (120), Expect(2) = 4e-10 Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Frame = +3 Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLVC 182 +F+ EVDV LS Q EVT+Y NG V+R E++ NLYA+ID V Sbjct: 31 HFAQITSEVDVNLSVA---RNPRISANQSAEVTVYA--NGTVIRAEESSENLYASIDRVA 85 Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKEDV 272 DK+ KL+K KE+ G R PK V Sbjct: 86 DKLARKLRKYKER---NGVHRIRHSPKTSV 112 Score = 37.0 bits (84), Expect(2) = 4e-10 Identities = 16/33 (48%), Positives = 22/33 (66%) Frame = +1 Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 P V+R+K + P+TV+EA+ LE V H FYV Sbjct: 132 PPEVVRTKYFAMPPMTVQEALHQLELVDHDFYV 164 [28][TOP] >UniRef100_B9IDE9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IDE9_POPTR Length = 231 Score = 67.0 bits (162), Expect = 6e-10 Identities = 35/75 (46%), Positives = 51/75 (68%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH ++ VDV LS RGG+ G G + ++ EVT++T R+GVVR E+ ++A+IDLV I Sbjct: 41 SHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSII 99 Query: 192 RAKLQKIKEKAISRG 236 + KL+KIK+K G Sbjct: 100 QRKLRKIKDKESDHG 114 [29][TOP] >UniRef100_A9PHY3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa RepID=A9PHY3_POPTR Length = 306 Score = 67.0 bits (162), Expect = 6e-10 Identities = 35/75 (46%), Positives = 51/75 (68%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 SH ++ VDV LS RGG+ G G + ++ EVT++T R+GVVR E+ ++A+IDLV I Sbjct: 116 SHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSII 174 Query: 192 RAKLQKIKEKAISRG 236 + KL+KIK+K G Sbjct: 175 QRKLRKIKDKESDHG 189 [30][TOP] >UniRef100_Q10ZL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZL6_TRIEI Length = 215 Score = 51.2 bits (121), Expect(2) = 1e-09 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Frame = +3 Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLVC 182 +F EVDV LS +Q EVTIY NG V+R +++ NLYA+IDLV Sbjct: 30 HFQQLTTEVDVHLSVA---RNPRINPKQTAEVTIYA--NGTVIRAQESSENLYASIDLVA 84 Query: 183 DKIRAKLQKIKEKAISR 233 DKI +L+K KEK S+ Sbjct: 85 DKIARQLRKYKEKRQSK 101 Score = 35.0 bits (79), Expect(2) = 1e-09 Identities = 15/55 (27%), Positives = 31/55 (56%) Frame = +1 Query: 316 TLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 T+ L + + ++ + P+ V+R+K + +TVEEA++ L+ + H FY+ Sbjct: 107 TVDLIESQPVVENLIGDRQAELPSEVVRTKYFPMPSMTVEEALEQLQLIDHDFYM 161 [31][TOP] >UniRef100_B6G1P8 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1P8_9CLOT Length = 190 Score = 58.9 bits (141), Expect(2) = 3e-09 Identities = 40/95 (42%), Positives = 54/95 (56%) Frame = +3 Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206 EV VT+SA GK QKVEV I + +RVE+ ++NLY AIDLVCDK+ ++ Sbjct: 44 EVKVTVSA--------GKNRQKVEVMIPNVNGHTIRVEEEQDNLYPAIDLVCDKLSRQII 95 Query: 207 KIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVK 311 K K+K +R PG + + EE QE EV+ Sbjct: 96 KYKDKFKTR--VPGNFSIRYEGIEELAQELDYEVE 128 Score = 25.8 bits (55), Expect(2) = 3e-09 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +1 Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 + R K L P+++EEAI + H FY+ Sbjct: 134 IERRKKFNLKPMSIEEAILQMNLTDHDFYM 163 [32][TOP] >UniRef100_Q31KN7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1 Tax=Synechococcus elongatus PCC 7942 RepID=Q31KN7_SYNE7 Length = 207 Score = 53.1 bits (126), Expect(2) = 4e-09 Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Frame = +3 Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKE--QKVEVTIYTLRNG-VVRVEDAENNLYAAID 173 +++ L E+DV LS H K Q EVTIY NG V+R E+ NLYA+ID Sbjct: 29 SHYQSFLTEIDVHLSV-----AKHAKSNPRQTAEVTIYA--NGTVIRAEECNENLYASID 81 Query: 174 LVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 278 LV DKI +L+K KEK R G+ E D+ Sbjct: 82 LVSDKITRQLKKYKEKLRDR---KGQLSTAETADQ 113 Score = 31.2 bits (69), Expect(2) = 4e-09 Identities = 12/33 (36%), Positives = 22/33 (66%) Frame = +1 Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 P +++R+K + +TVE+A+ L+ V H FY+ Sbjct: 132 PQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYM 164 [33][TOP] >UniRef100_Q5N179 Light repressed protein A homolog n=1 Tax=Synechococcus elongatus PCC 6301 RepID=Q5N179_SYNP6 Length = 207 Score = 51.6 bits (122), Expect(2) = 1e-08 Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Frame = +3 Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKE--QKVEVTIYTLRNG-VVRVEDAENNLYAAID 173 +++ L E+DV LS H K Q EVTIY NG V+R E+ NLYA+ID Sbjct: 29 SHYQSFLTEIDVHLSV-----AKHAKSNPRQTAEVTIYA--NGTVIRAEECNENLYASID 81 Query: 174 LVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 278 LV DKI +L+K KE+ R G+ E D+ Sbjct: 82 LVSDKITRQLKKYKEELRDR---KGQLSTAETADQ 113 Score = 31.2 bits (69), Expect(2) = 1e-08 Identities = 12/33 (36%), Positives = 22/33 (66%) Frame = +1 Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 P +++R+K + +TVE+A+ L+ V H FY+ Sbjct: 132 PQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYM 164 [34][TOP] >UniRef100_C2D8Z3 Possible ribosome-associated inhibitor A n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8Z3_9ACTN Length = 192 Score = 50.4 bits (119), Expect(2) = 2e-08 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Frame = +3 Query: 72 HGKKEQKV-EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG 248 H ++K EVT+Y +RN VVRVE + ++YAAID DK+ +L+K K + I R Sbjct: 49 HSNPDRKTCEVTVY-VRNNVVRVEASSEDMYAAIDAASDKVTRQLRKYKTRIIDR---KQ 104 Query: 249 RAGPKEDVDEEDFQEYLKEVKMDTQLV 329 R+ +D + + EV D LV Sbjct: 105 RSQAPAPAPSKDLSDLIDEVADDDMLV 131 Score = 31.6 bits (70), Expect(2) = 2e-08 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +1 Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 ++R K + L P+T EEA+ + +GH FYV Sbjct: 130 LVREKYIDLHPMTEEEALVQTDLIGHDFYV 159 [35][TOP] >UniRef100_A5GUZ2 Light repressed protein A homolog n=1 Tax=Synechococcus sp. RCC307 RepID=A5GUZ2_SYNR3 Length = 187 Score = 41.2 bits (95), Expect(2) = 2e-08 Identities = 25/78 (32%), Positives = 42/78 (53%) Frame = +3 Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182 ++F+ ++E DV LS +Q EVT++ V+R ++ NLYA+IDLV Sbjct: 29 SHFNGMVQEADVHLSVARNPR----VPQQTAEVTLFA-SGTVIRAQERSQNLYASIDLVA 83 Query: 183 DKIRAKLQKIKEKAISRG 236 K+ +LQ+ K++ G Sbjct: 84 GKLARQLQRHKDRRQGHG 101 Score = 40.4 bits (93), Expect(2) = 2e-08 Identities = 22/47 (46%), Positives = 29/47 (61%) Frame = +1 Query: 340 EQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 + LQ + AEL PA V+R K + P++VEEAI LE + H FYV Sbjct: 118 DMLQGRHAEL----PAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYV 160 [36][TOP] >UniRef100_A9KS11 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KS11_CLOPH Length = 178 Score = 48.5 bits (114), Expect(2) = 7e-08 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 7/93 (7%) Frame = +3 Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206 E+ VTLS K QK+EVTI ++ +VR E N++YA+IDLV + I +L+ Sbjct: 36 EIHVTLSVE--------KDRQKIEVTI-PMKGNIVRAEQVSNDMYASIDLVEEVIERQLK 86 Query: 207 KIKEKAISRGAWPGRAGP-------KEDVDEED 284 K K K P ED DEED Sbjct: 87 KYKSKLKDMNQSAANFNPSFFEDVLNEDSDEED 119 Score = 31.6 bits (70), Expect(2) = 7e-08 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 388 NVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 N+ R K + P+ EEA +E +GH+FYV Sbjct: 121 NITRVKRFAMKPMDAEEACVQMELLGHNFYV 151 [37][TOP] >UniRef100_B0A7Y1 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A7Y1_9CLOT Length = 187 Score = 60.1 bits (144), Expect = 8e-08 Identities = 32/71 (45%), Positives = 45/71 (63%) Frame = +3 Query: 9 FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188 + H EV VT+SAR K +QK+EVTI + ++R ED+E NLYAAID+V DK Sbjct: 36 YLHEDTEVKVTVSAR--------KAKQKIEVTIIPINGPIIRAEDSEENLYAAIDVVYDK 87 Query: 189 IRAKLQKIKEK 221 + +L++ K K Sbjct: 88 LNKQLRRYKNK 98 [38][TOP] >UniRef100_B1I6C1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I6C1_DESAP Length = 174 Score = 47.8 bits (112), Expect(2) = 1e-07 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Frame = +3 Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182 + F H V V LS K +VEVT+ + ++R E+ ++YA+IDLV Sbjct: 28 SKFEHHFGSVQVALSVE--------KDSHRVEVTV-PIDGMILRGEEVTGDMYASIDLVV 78 Query: 183 DKIRAKLQKIKEKAISRGAWPGRAG-PKEDVDEEDFQEY 296 +K+ +L++ K K ++R PG G +E +ED +EY Sbjct: 79 EKLEKQLERYKGKLLNRR--PGAGGVTREQETQEDEEEY 115 Score = 31.6 bits (70), Expect(2) = 1e-07 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = +1 Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 ++R+K L P+ V+EA+ + +GHSF+V Sbjct: 117 IVRTKRFALKPMPVDEAVMQMNLLGHSFFV 146 [39][TOP] >UniRef100_UPI00017F60C6 putative sigma 54 modulation protein n=1 Tax=Clostridium difficile QCD-23m63 RepID=UPI00017F60C6 Length = 185 Score = 58.5 bits (140), Expect = 2e-07 Identities = 31/65 (47%), Positives = 42/65 (64%) Frame = +3 Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206 EV VT+SA+ K QKVEVTI + ++R ED E++LYAAID+VCDK+ ++ Sbjct: 36 EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87 Query: 207 KIKEK 221 K K K Sbjct: 88 KYKTK 92 [40][TOP] >UniRef100_UPI00017F5ACC putative sigma 54 modulation protein n=1 Tax=Clostridium difficile ATCC 43255 RepID=UPI00017F5ACC Length = 185 Score = 58.5 bits (140), Expect = 2e-07 Identities = 31/65 (47%), Positives = 42/65 (64%) Frame = +3 Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206 EV VT+SA+ K QKVEVTI + ++R ED E++LYAAID+VCDK+ ++ Sbjct: 36 EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87 Query: 207 KIKEK 221 K K K Sbjct: 88 KYKTK 92 [41][TOP] >UniRef100_C9XLM7 Putative sigma 54 modulation protein n=3 Tax=Clostridium difficile RepID=C9XLM7_CLODI Length = 187 Score = 58.5 bits (140), Expect = 2e-07 Identities = 31/65 (47%), Positives = 42/65 (64%) Frame = +3 Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206 EV VT+SA+ K QKVEVTI + ++R ED E++LYAAID+VCDK+ ++ Sbjct: 36 EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87 Query: 207 KIKEK 221 K K K Sbjct: 88 KYKTK 92 [42][TOP] >UniRef100_Q8DKM6 LrtA protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DKM6_THEEB Length = 209 Score = 58.2 bits (139), Expect = 3e-07 Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Frame = +3 Query: 3 ANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLV 179 ++F + + EVDV LS AR T +Q EVT++ + V+R E++ NLYA+IDLV Sbjct: 29 SHFQNVINEVDVHLSVARNRSTAP----KQTAEVTVF-VNGSVIRAEESSENLYASIDLV 83 Query: 180 CDKIRAKLQKIKEK 221 DKI KL+K+KEK Sbjct: 84 ADKIARKLRKLKEK 97 [43][TOP] >UniRef100_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00W70_OSTTA Length = 184 Score = 58.2 bits (139), Expect = 3e-07 Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 8/99 (8%) Frame = +3 Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191 S ++EVDV SARGG+ G+ G E K EVT+ R + + NLYA ID D + Sbjct: 82 SRDIREVDVRCSARGGE-GSKGGVEHKTEVTVLMTRGPTLHADGVGENLYATIDQCADIV 140 Query: 192 RAKLQKIKEKAISRGAWPGR--AGPK------EDVDEED 284 ++K KEK +GA A PK EDVD +D Sbjct: 141 TRSIRKHKEKHGGKGARHAAHDASPKEALLDAEDVDGDD 179 [44][TOP] >UniRef100_C9BUA9 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Enterococcus faecium RepID=C9BUA9_ENTFC Length = 183 Score = 40.4 bits (93), Expect(2) = 7e-07 Identities = 23/48 (47%), Positives = 32/48 (66%) Frame = +3 Query: 78 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221 +K KVEVTI L V+R E+ +LYA+IDLV DK+ +++K K K Sbjct: 49 EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95 Score = 36.2 bits (82), Expect(2) = 7e-07 Identities = 20/72 (27%), Positives = 42/72 (58%) Frame = +1 Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444 +T + R SR T + +LF++E++ + +EL+ ++R+K + L P+ EEA+ Sbjct: 93 KTKINRKSRETGMNTADATALFNEEDENEND-SELD------IVRTKRLSLKPMDSEEAV 145 Query: 445 DALEAVGHSFYV 480 + +GH+F++ Sbjct: 146 LQMNMLGHNFFI 157 [45][TOP] >UniRef100_C9BP47 Sigma 54 modulation protein/ribosomal protein S30EA n=2 Tax=Enterococcus faecium RepID=C9BP47_ENTFC Length = 183 Score = 40.4 bits (93), Expect(2) = 7e-07 Identities = 23/48 (47%), Positives = 32/48 (66%) Frame = +3 Query: 78 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221 +K KVEVTI L V+R E+ +LYA+IDLV DK+ +++K K K Sbjct: 49 EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95 Score = 36.2 bits (82), Expect(2) = 7e-07 Identities = 20/72 (27%), Positives = 42/72 (58%) Frame = +1 Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444 +T + R SR T + +LF++E++ + +EL+ ++R+K + L P+ EEA+ Sbjct: 93 KTKINRKSRETGMNTADAAALFNEEDENEND-SELD------IVRTKRLSLKPMDSEEAV 145 Query: 445 DALEAVGHSFYV 480 + +GH+F++ Sbjct: 146 LQMNMLGHNFFI 157 [46][TOP] >UniRef100_C9B3Z6 Sigma 54 modulation protein/ribosomal protein S30EA n=3 Tax=Enterococcus faecium RepID=C9B3Z6_ENTFC Length = 183 Score = 40.4 bits (93), Expect(2) = 7e-07 Identities = 23/48 (47%), Positives = 32/48 (66%) Frame = +3 Query: 78 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221 +K KVEVTI L V+R E+ +LYA+IDLV DK+ +++K K K Sbjct: 49 EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95 Score = 36.2 bits (82), Expect(2) = 7e-07 Identities = 20/72 (27%), Positives = 42/72 (58%) Frame = +1 Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444 +T + R SR T + +LF++E++ + +EL+ ++R+K + L P+ EEA+ Sbjct: 93 KTKINRKSRETGMNTANAAALFNEEDENEND-SELD------IVRTKRLSLKPMDSEEAV 145 Query: 445 DALEAVGHSFYV 480 + +GH+F++ Sbjct: 146 LQMNMLGHNFFI 157 [47][TOP] >UniRef100_B9NF07 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NF07_POPTR Length = 127 Score = 56.6 bits (135), Expect = 8e-07 Identities = 31/72 (43%), Positives = 44/72 (61%) Frame = +3 Query: 9 FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188 FSH ++EVD LS RGG+ G + I R+GVVR E+ +YA IDLV Sbjct: 22 FSHLVREVDARLSVRGGELGKGPR--------IRKCRHGVVRAEEDSETIYATIDLVLSI 73 Query: 189 IRAKLQKIKEKA 224 I++KL+K+KE++ Sbjct: 74 IQSKLRKMKEES 85 [48][TOP] >UniRef100_C2HCP0 Ribosome-associated inhibitor protein Y n=4 Tax=Enterococcus faecium RepID=C2HCP0_ENTFC Length = 183 Score = 40.4 bits (93), Expect(2) = 2e-06 Identities = 23/48 (47%), Positives = 32/48 (66%) Frame = +3 Query: 78 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221 +K KVEVTI L V+R E+ +LYA+IDLV DK+ +++K K K Sbjct: 49 EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95 Score = 35.0 bits (79), Expect(2) = 2e-06 Identities = 21/72 (29%), Positives = 40/72 (55%) Frame = +1 Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444 +T + R SR T + LF+ EE+ + +EL+ ++R+K + L P+ EEA+ Sbjct: 93 KTKINRKSRETGMNTADAAVLFNGEEENEND-SELD------IVRTKRLSLKPMDSEEAV 145 Query: 445 DALEAVGHSFYV 480 + +GH+F++ Sbjct: 146 LQMNMLGHNFFI 157 [49][TOP] >UniRef100_B5YF17 Ribosomal subunit interface protein n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YF17_DICT6 Length = 179 Score = 43.1 bits (100), Expect(2) = 3e-06 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Frame = +3 Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLV 179 + F ++ ++V S + G K +VEVTI NG +++ +A + +IDLV Sbjct: 28 SRFFDNIENIEVLFSE---EDWKDGSKRHRVEVTIKA--NGRIIKASEANQDFRTSIDLV 82 Query: 180 CDKIRAKLQKIKEKAISRG 236 DK+ +L+++KEK + +G Sbjct: 83 VDKLETQLKRLKEKLVDKG 101 Score = 31.6 bits (70), Expect(2) = 3e-06 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = +1 Query: 334 KEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 + E ++ AE V++ K +L P+ VEEAI +E +GH F++ Sbjct: 103 RAESIREILAEKEVEEKPQVVKVKRFLLKPMDVEEAILQMELLGHDFFI 151 [50][TOP] >UniRef100_B7CAG7 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAG7_9FIRM Length = 177 Score = 40.8 bits (94), Expect(2) = 3e-06 Identities = 20/46 (43%), Positives = 33/46 (71%) Frame = +3 Query: 84 EQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221 +QK+EVTI T R ++R E +++LYAAIDL DK+ ++++ K + Sbjct: 49 KQKIEVTIPT-RYAILRAEVVDDDLYAAIDLAVDKLEDQIRRTKTR 93 Score = 33.5 bits (75), Expect(2) = 3e-06 Identities = 18/69 (26%), Positives = 39/69 (56%) Frame = +1 Query: 274 MRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDAL 453 +RRT +R+++ +L+ E L + + V+R+K++V ++++EAI + Sbjct: 87 IRRTKTRLTRKNKESLA----EAFLDHELFNDEEVDDDEVVRTKSIVPKEMSLDEAIMKM 142 Query: 454 EAVGHSFYV 480 E +GH F++ Sbjct: 143 ELLGHDFFI 151 [51][TOP] >UniRef100_C1CWW9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWW9_DEIDV Length = 188 Score = 41.6 bits (96), Expect(2) = 6e-06 Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 6/106 (5%) Frame = +3 Query: 9 FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188 ++ + + VTL+ R D G++ +VEV + + NG++R E+ +++YAAID D Sbjct: 31 YNDQITDARVTLTVR--DVRDAGRRN-RVEVQL-NVPNGIIRAEEHHSDMYAAIDKASDV 86 Query: 189 IRAKLQKIKEKAISRG----AWPGRAGPKEDVDE--EDFQEYLKEV 308 + +L+K K + + + PG + DV+ +D E++ E+ Sbjct: 87 LERQLRKFKTRYMKQRHETVPQPGPGPAEADVNAGLDDVSEFMPEI 132 Score = 32.0 bits (71), Expect(2) = 6e-06 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = +1 Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 ++R K + P++ E+A+ +EA+GH FYV Sbjct: 132 IVRQKRFDMRPMSPEDAVTQMEALGHDFYV 161 [52][TOP] >UniRef100_B7KLI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLI5_CYAP7 Length = 199 Score = 53.5 bits (127), Expect = 7e-06 Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 2/100 (2%) Frame = +3 Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLVC 182 +F +VDV LS + + K EVT+Y NG V+R ++ NLYA+IDLV Sbjct: 30 HFQTLTTKVDVHLSVA---KNARIQNKHKAEVTVYA--NGTVIRAQEGSENLYASIDLVS 84 Query: 183 DKIRAKLQKIKEKAISRGAW-PGRAGPKEDVDEEDFQEYL 299 DKI +L+K KE+ + + A P +AG E V +E +E L Sbjct: 85 DKIARQLRKYKERKLEQNAHSPVKAG--EVVQQETIEENL 122 [53][TOP] >UniRef100_Q1IYK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IYK5_DEIGD Length = 186 Score = 40.0 bits (92), Expect(2) = 7e-06 Identities = 30/107 (28%), Positives = 53/107 (49%) Frame = +3 Query: 9 FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188 FS + + V L+ R D G++ +VEV + + NG++R E+ ++YAAID D Sbjct: 31 FSDQITDARVVLTVR--DVRDAGRRN-RVEVQL-NVPNGIIRAEEHHADMYAAIDRASDV 86 Query: 189 IRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLV 329 + +L+K K K + R P+ + E D L + + ++V Sbjct: 87 LERQLRKFKTKYL-RHRQEAAPPPQPGLAEADVNAGLDDTEFRPEIV 132 Score = 33.1 bits (74), Expect(2) = 7e-06 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = +1 Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 ++R+K L P++ E+A+ +EA+GH FYV Sbjct: 131 IVRTKRFDLRPMSPEDAVTQMEALGHDFYV 160 [54][TOP] >UniRef100_C0Z6T8 Putative uncharacterized protein yvyD n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6T8_BREBN Length = 185 Score = 43.1 bits (100), Expect(2) = 8e-06 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 11/97 (11%) Frame = +3 Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206 EV VT+ G+ GT +EVTI L ++R E+ ++YAAIDLV +K+ +++ Sbjct: 38 EVQVTMHVHRGE-GT-------IEVTI-PLSGVIIRAEETHEDMYAAIDLVVEKLERQIR 88 Query: 207 KIKEKAIS--RGAWPGRAGPKE---------DVDEED 284 K K K + R GR +E DVDEED Sbjct: 89 KHKTKLMRKLRVDSTGRIAQRESQPVAVMIPDVDEED 125 Score = 30.0 bits (66), Expect(2) = 8e-06 Identities = 11/31 (35%), Positives = 22/31 (70%) Frame = +1 Query: 388 NVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 +++R+K L P+ +EA+ ++ +GHSF+V Sbjct: 129 DIVRTKRFDLKPMDAQEAVMQMDMLGHSFFV 159 [55][TOP] >UniRef100_Q03GZ9 SSU ribosomal protein S30P / sigma 54 modulation protein n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ9_PEDPA Length = 184 Score = 42.0 bits (97), Expect(2) = 1e-05 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = +3 Query: 81 KEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG- 257 K KVEVTI L V+R E+ +LYA++DLV DK+ +L+K K K + G G Sbjct: 50 KTAKVEVTI-PLPYLVLRAEETSPDLYASVDLVTDKLERQLRKYKTKINRKSRETGYKGV 108 Query: 258 --PKEDVDEED 284 P D+ E + Sbjct: 109 EIPSGDIVENE 119 Score = 30.8 bits (68), Expect(2) = 1e-05 Identities = 12/31 (38%), Positives = 23/31 (74%) Frame = +1 Query: 388 NVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 +++R+K V L P+ EEAI ++ +GH+F++ Sbjct: 126 DIVRTKQVSLKPMGSEEAILQMDMLGHNFFI 156 [56][TOP] >UniRef100_Q5M196 Ribosomal subunit interface protein, ribosomal protein S30AE family n=2 Tax=Streptococcus thermophilus RepID=Q5M196_STRT1 Length = 182 Score = 38.1 bits (87), Expect(2) = 1e-05 Identities = 22/48 (45%), Positives = 31/48 (64%) Frame = +3 Query: 78 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221 +K KVEVTI T + +R ED ++Y +IDLV DKI +++K K K Sbjct: 49 EKTAKVEVTIPT-GSVTLRAEDVSLDMYGSIDLVVDKIARQIRKNKTK 95 Score = 34.7 bits (78), Expect(2) = 1e-05 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = +1 Query: 328 FDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480 F+KEE + E V+R+K + L P+ VEEAI +E +GH F++ Sbjct: 114 FNKEEVEEAPAVE--------VVRTKNIELKPMDVEEAILQMELLGHDFFI 156