BP091540 ( MX240f12_r )

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[1][TOP]
>UniRef100_A8J8B2 Plastid-specific ribosomal protein 1 n=1 Tax=Chlamydomonas
           reinhardtii RepID=A8J8B2_CHLRE
          Length = 286

 Score =  218 bits (554), Expect(2) = 2e-77
 Identities = 108/108 (100%), Positives = 108/108 (100%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
           ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC
Sbjct: 98  ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 157

Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL 326
           DKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL
Sbjct: 158 DKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL 205

 Score = 95.5 bits (236), Expect(2) = 2e-77
 Identities = 51/53 (96%), Positives = 51/53 (96%), Gaps = 1/53 (1%)
 Frame = +1

Query: 325 LFDKEEQLQRQFAELNRI*PANVMRSKTVVL-DPITVEEAIDALEAVGHSFYV 480
           LFDKEEQLQRQFAELNRI PANVMRSKTVVL DPITVEEAIDALEAVGHSFYV
Sbjct: 205 LFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 257

[2][TOP]
>UniRef100_Q5MCR1 Chloroplast-specific ribosome-associated protein n=1 Tax=Volvox
           carteri f. nagariensis RepID=Q5MCR1_VOLCA
          Length = 232

 Score =  173 bits (438), Expect = 6e-42
 Identities = 88/132 (66%), Positives = 107/132 (81%)
 Frame = +3

Query: 6   NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
           NF+HTLKEVDVTLSARGGDTGTHGKKEQKV+VTI+TLRNGVVRVED E+NLYAAIDLVCD
Sbjct: 103 NFAHTLKEVDVTLSARGGDTGTHGKKEQKVDVTIFTLRNGVVRVEDRESNLYAAIDLVCD 162

Query: 186 KIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLV*QGGAAAAPVRR 365
           KIR+KL ++KEKAI++G WPG+AGPKE+V+     +     +++TQ + QGG A+  V  
Sbjct: 163 KIRSKLTRVKEKAITKGKWPGKAGPKENVEGRRTSKSTSRCQVETQCL-QGGRASEAVAE 221

Query: 366 AEPHLTRQRHAL 401
                T+QRHAL
Sbjct: 222 LTA-TTQQRHAL 232

[3][TOP]
>UniRef100_B9SEK8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1
           Tax=Ricinus communis RepID=B9SEK8_RICCO
          Length = 311

 Score = 73.2 bits (178), Expect(2) = 4e-15
 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 17/116 (14%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH ++EVDV LS RGG+ G  G K ++ EVT++T ++GV+R E+    +YA+IDLV   I
Sbjct: 119 SHLVREVDVRLSVRGGEFGK-GPKIRRCEVTLFTKKHGVIRAEEDAETIYASIDLVSSII 177

Query: 192 RAKLQKIKEKAISRGAW-----------PGRAGPKEDVDE------EDFQEYLKEV 308
           + KL+KIKEK    G             P     K+D DE      ++ ++Y+ EV
Sbjct: 178 QRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDEDEDYIDEV 233

 Score = 31.6 bits (70), Expect(2) = 4e-15
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFY 477
           V+R+K   + P+TV EAI+ L+ V H FY
Sbjct: 233 VVRTKYFDMPPLTVSEAIEQLKNVDHDFY 261

[4][TOP]
>UniRef100_A9TA00 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9TA00_PHYPA
          Length = 297

 Score = 74.7 bits (182), Expect(2) = 1e-14
 Identities = 41/86 (47%), Positives = 58/86 (67%)
 Frame = +3

Query: 6   NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
           N S  +KEVDV +S RGG+TG  G++ Q+ EVT++T ++GVVR E+   ++YA+ID V D
Sbjct: 117 NQSALVKEVDVRMSVRGGETG-RGERLQRCEVTLFTKKHGVVRAEEEAESMYASIDRVSD 175

Query: 186 KIRAKLQKIKEKAISRGAWPGRAGPK 263
            I  KL+KIKEK    G  P +  P+
Sbjct: 176 VISRKLRKIKEKDGGHGR-PAKYSPR 200

 Score = 28.1 bits (61), Expect(2) = 1e-14
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFY 477
           P  V+R+K   + P+   EA++ L  VGH FY
Sbjct: 224 PDEVVRTKYFEMRPMKPLEALEQLVNVGHDFY 255

[5][TOP]
>UniRef100_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LMC5_PICSI
          Length = 321

 Score = 72.4 bits (176), Expect(2) = 5e-14
 Identities = 43/104 (41%), Positives = 62/104 (59%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           ++ ++EVDV LS RGG+ G  G K ++ EVT++T ++GVVR E+    +YA+ID+V D I
Sbjct: 119 ANLVREVDVRLSIRGGEVGK-GPKIRRCEVTLFTKKHGVVRAEEEAETIYASIDIVSDII 177

Query: 192 RAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQ 323
           R KL+KIKEK        G   P +   +    E L  V MD +
Sbjct: 178 RRKLRKIKEKD------GGHGRPSKMRKQPKLGELLSTVVMDVK 215

 Score = 28.5 bits (62), Expect(2) = 5e-14
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 325 LFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFY 477
           L D EE    +  +L+      V+R+K   + P++ EEA++ L  V H FY
Sbjct: 225 LADVEEMRYEKIDDLSD----EVVRTKYFEMPPMSPEEALEQLMNVDHDFY 271

[6][TOP]
>UniRef100_C1EFG3 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFG3_9CHLO
          Length = 284

 Score = 79.7 bits (195), Expect = 9e-14
 Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 6/107 (5%)
 Frame = +3

Query: 15  HTLKEVDVTLSARGG-DTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           H ++EVDV  S+RGG D  T G   QK EVT+YT RNG++R E+  ++LYA+ID V DK+
Sbjct: 113 HDVREVDVRCSSRGGADKKTPGGALQKTEVTVYT-RNGIIRSEEEADDLYASIDAVSDKL 171

Query: 192 RAKLQKIKEKAISRGAWPGRAGPKEDVDE--EDFQ---EYLKEVKMD 317
             KL+K+KEK IS+     +  PK   D   E+ Q   E L +  MD
Sbjct: 172 ERKLRKVKEKKISKRPKHNKNAPKAQTDAIVEEMQAADEALADESMD 218

[7][TOP]
>UniRef100_P19954 30S ribosomal protein 1, chloroplastic n=1 Tax=Spinacia oleracea
           RepID=RR30_SPIOL
          Length = 302

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/78 (50%), Positives = 55/78 (70%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
           A  SH ++EVDV LSARGGD  + G K ++ EVT++T R+GV+R E+   +LY++IDLV 
Sbjct: 103 AKHSHLVREVDVRLSARGGDL-SKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVS 161

Query: 183 DKIRAKLQKIKEKAISRG 236
             I+ KL+KIK+K    G
Sbjct: 162 SIIQRKLRKIKDKVSDHG 179

[8][TOP]
>UniRef100_C1N7A9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1N7A9_9CHLO
          Length = 245

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 44/83 (53%), Positives = 54/83 (65%)
 Frame = +3

Query: 15  HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIR 194
           H ++EVDVT SAR       G   Q  +VT+YT RNGVVR E+  +NLYA+ID V DKI 
Sbjct: 79  HDVREVDVTCSARSEKQ--QGGDLQMTQVTVYT-RNGVVRSEEEADNLYASIDAVSDKIE 135

Query: 195 AKLQKIKEKAISRGAWPGRAGPK 263
            KL+KIKEK  S+ A   +A PK
Sbjct: 136 RKLRKIKEKKNSKKAGKTKANPK 158

[9][TOP]
>UniRef100_A9RWK9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RWK9_PHYPA
          Length = 221

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 39/72 (54%), Positives = 52/72 (72%)
 Frame = +3

Query: 6   NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
           N S  +KEVDV +S RGG+TG  GK  Q+ EVT++T ++GVVR E+   ++YA+ID V D
Sbjct: 39  NQSALVKEVDVRMSVRGGETGRGGKL-QRCEVTLFTKKHGVVRAEEEAESMYASIDRVSD 97

Query: 186 KIRAKLQKIKEK 221
            I  KL+KIKEK
Sbjct: 98  VISRKLRKIKEK 109

[10][TOP]
>UniRef100_B9I297 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I297_POPTR
          Length = 306

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 38/75 (50%), Positives = 52/75 (69%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH ++EVDV LS RGG+ G  G + ++ EVT++T R+GVVR E+    +YA+IDLV   I
Sbjct: 117 SHLVREVDVRLSVRGGELGK-GPRIRRCEVTLFTNRHGVVRAEEDAETIYASIDLVSSII 175

Query: 192 RAKLQKIKEKAISRG 236
           + KL+KIKEK    G
Sbjct: 176 QRKLRKIKEKESDHG 190

[11][TOP]
>UniRef100_Q672Q2 Chloroplast-specific ribosomal protein n=1 Tax=Solanum lycopersicum
           RepID=Q672Q2_SOLLC
          Length = 311

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 36/75 (48%), Positives = 52/75 (69%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH  +EVDV LS RGG+ G  G K ++ EVT++T ++GV+R E+   ++Y +ID+V   I
Sbjct: 116 SHLAREVDVRLSVRGGELGK-GPKIRRCEVTLFTKKHGVIRAEEDGESIYGSIDMVSSII 174

Query: 192 RAKLQKIKEKAISRG 236
           + KL+KIKEK   RG
Sbjct: 175 QRKLRKIKEKDSDRG 189

[12][TOP]
>UniRef100_C6TFU4 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6TFU4_SOYBN
          Length = 208

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 36/75 (48%), Positives = 49/75 (65%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH ++EVDV LS RGG     G + ++ EVT++T R+GVVR E+   + Y +IDLV   I
Sbjct: 101 SHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSII 160

Query: 192 RAKLQKIKEKAISRG 236
           + KL+KIKEK    G
Sbjct: 161 QRKLRKIKEKVSDHG 175

[13][TOP]
>UniRef100_C6T7E3 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6T7E3_SOYBN
          Length = 291

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 36/75 (48%), Positives = 49/75 (65%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH ++EVDV LS RGG     G + ++ EVT++T R+GVVR E+   + Y +IDLV   I
Sbjct: 101 SHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSII 160

Query: 192 RAKLQKIKEKAISRG 236
           + KL+KIKEK    G
Sbjct: 161 QRKLRKIKEKVSDHG 175

[14][TOP]
>UniRef100_UPI0001984F94 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
           RepID=UPI0001984F94
          Length = 298

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 37/75 (49%), Positives = 51/75 (68%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH ++EVDV LS RGG+ G  G K ++ EVT++T ++GVVR E+    LY +ID+V   I
Sbjct: 109 SHLVREVDVRLSIRGGELGK-GPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSII 167

Query: 192 RAKLQKIKEKAISRG 236
           + KL+KIKEK    G
Sbjct: 168 QRKLRKIKEKDSDHG 182

[15][TOP]
>UniRef100_A7QEV5 Chromosome chr16 scaffold_86, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7QEV5_VITVI
          Length = 230

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 37/75 (49%), Positives = 51/75 (68%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH ++EVDV LS RGG+ G  G K ++ EVT++T ++GVVR E+    LY +ID+V   I
Sbjct: 41  SHLVREVDVRLSIRGGELGK-GPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSII 99

Query: 192 RAKLQKIKEKAISRG 236
           + KL+KIKEK    G
Sbjct: 100 QRKLRKIKEKDSDHG 114

[16][TOP]
>UniRef100_Q9FLV3 Similarity to ribosomal protein 30S subunit n=2 Tax=Arabidopsis
           thaliana RepID=Q9FLV3_ARATH
          Length = 365

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 37/75 (49%), Positives = 51/75 (68%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH ++EVDV LS RGG+ G  G + ++ EVT++T ++GVVR E+    +YA IDLV   I
Sbjct: 170 SHLVREVDVRLSVRGGEFGK-GPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTII 228

Query: 192 RAKLQKIKEKAISRG 236
           + KL+KIKEK    G
Sbjct: 229 QRKLRKIKEKDSDHG 243

[17][TOP]
>UniRef100_Q84M68 Os03g0856500 protein n=3 Tax=Oryza sativa RepID=Q84M68_ORYSJ
          Length = 309

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
           A  S  +KEVDV LSARGG+  + G K  + E+T++T R+GV+R E+   + YA+IDL  
Sbjct: 109 AKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLAS 167

Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVK 311
             I+ KL+KIKEK        G   P         D +++D Q  LK+++
Sbjct: 168 SIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLE 217

[18][TOP]
>UniRef100_Q10AC8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative,
           expressed n=1 Tax=Oryza sativa Japonica Group
           RepID=Q10AC8_ORYSJ
          Length = 241

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
           A  S  +KEVDV LSARGG+  + G K  + E+T++T R+GV+R E+   + YA+IDL  
Sbjct: 109 AKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLAS 167

Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVK 311
             I+ KL+KIKEK        G   P         D +++D Q  LK+++
Sbjct: 168 SIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLE 217

[19][TOP]
>UniRef100_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
           RepID=C6YXL0_ORYSJ
          Length = 321

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
           A  S  +KEVDV LSARGG+  + G K  + E+T++T R+GV+R E+   + YA+IDL  
Sbjct: 109 AKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLAS 167

Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVK 311
             I+ KL+KIKEK        G   P         D +++D Q  LK+++
Sbjct: 168 SIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLE 217

[20][TOP]
>UniRef100_C9EFD1 Chloroplast ribosomal protein (Fragment) n=1 Tax=Solanum tuberosum
           RepID=C9EFD1_SOLTU
          Length = 280

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 35/75 (46%), Positives = 51/75 (68%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH  +EVDV LS RGG+ G  G K ++ EVT++T ++GV+R E+   ++Y +ID+V   I
Sbjct: 88  SHLAREVDVRLSVRGGELGK-GPKIRRCEVTLFTKKHGVIRAEEDAESIYGSIDMVSSII 146

Query: 192 RAKLQKIKEKAISRG 236
           + KL+KIKEK    G
Sbjct: 147 QRKLRKIKEKDSDHG 161

[21][TOP]
>UniRef100_B6TYP8 Plastid-specific 30S ribosomal protein 1 n=1 Tax=Zea mays
           RepID=B6TYP8_MAIZE
          Length = 309

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 34/69 (49%), Positives = 49/69 (71%)
 Frame = +3

Query: 15  HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIR 194
           H ++EVDV LSARGG+ G  G K  + E+T++T R+GV+R E+   + YA+IDL    ++
Sbjct: 104 HLVREVDVRLSARGGELG-RGPKTSRCEITLFTKRHGVLRAEEDAESTYASIDLAAAIVK 162

Query: 195 AKLQKIKEK 221
            KL+KIKEK
Sbjct: 163 RKLRKIKEK 171

[22][TOP]
>UniRef100_A9PJW3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa x
           Populus deltoides RepID=A9PJW3_9ROSI
          Length = 268

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 14/113 (12%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH ++ VDV LS RGG+ G  G + ++ EVT++T R+GVVR E+    +YA+IDL    I
Sbjct: 116 SHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETIYASIDLASSII 174

Query: 192 RAKLQKIKEKAISRGAW-----------PGRAGPKEDVDE---EDFQEYLKEV 308
           + KL+KIK+K    G             P     ++D DE   ++ ++Y++EV
Sbjct: 175 QRKLRKIKDKESDHGRHMKGFNRLKVREPMHQVVEDDADEVSQQEDEDYIEEV 227

[23][TOP]
>UniRef100_UPI00017F5F53 putative RNA-binding protein n=1 Tax=Clostridium difficile
           QCD-23m63 RepID=UPI00017F5F53
          Length = 183

 Score = 58.9 bits (141), Expect(2) = 2e-10
 Identities = 31/72 (43%), Positives = 45/72 (62%)
 Frame = +3

Query: 6   NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
           N+ H   +V VT+SAR        K  QK+EVTI T+   ++R ED + NLY AID+V D
Sbjct: 29  NYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD 80

Query: 186 KIRAKLQKIKEK 221
           K+  +L+K K++
Sbjct: 81  KLSKQLKKYKKR 92

 Score = 29.6 bits (65), Expect(2) = 2e-10
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 319 LSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           ++L D++E    +  EL       + R K   + P++ EEA+  +E +GH FY+
Sbjct: 110 INLADEQEDYGDENQELV------IQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157

[24][TOP]
>UniRef100_C9XIR4 Putative RNA-binding protein n=3 Tax=Clostridium difficile
           RepID=C9XIR4_CLODI
          Length = 183

 Score = 58.9 bits (141), Expect(2) = 2e-10
 Identities = 31/72 (43%), Positives = 45/72 (62%)
 Frame = +3

Query: 6   NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
           N+ H   +V VT+SAR        K  QK+EVTI T+   ++R ED + NLY AID+V D
Sbjct: 29  NYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD 80

Query: 186 KIRAKLQKIKEK 221
           K+  +L+K K++
Sbjct: 81  KLSKQLKKYKKR 92

 Score = 29.6 bits (65), Expect(2) = 2e-10
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 319 LSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           ++L D++E    +  EL       + R K   + P++ EEA+  +E +GH FY+
Sbjct: 110 INLADEQEDYGDENQELV------IQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157

[25][TOP]
>UniRef100_Q18CN1 Putative RNA-binding protein n=1 Tax=Clostridium difficile 630
           RepID=Q18CN1_CLOD6
          Length = 183

 Score = 58.9 bits (141), Expect(2) = 2e-10
 Identities = 31/72 (43%), Positives = 45/72 (62%)
 Frame = +3

Query: 6   NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
           N+ H   +V VT+SAR        K  QK+EVTI T+   ++R ED + NLY AID+V D
Sbjct: 29  NYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD 80

Query: 186 KIRAKLQKIKEK 221
           K+  +L+K K++
Sbjct: 81  KLSKQLKKYKKR 92

 Score = 29.6 bits (65), Expect(2) = 2e-10
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 319 LSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           ++L D++E    +  EL       + R K   + P++ EEA+  +E +GH FY+
Sbjct: 110 INLADEQEDYGDENQELV------IQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157

[26][TOP]
>UniRef100_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
           bicolor RepID=C5WRX8_SORBI
          Length = 310

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 34/69 (49%), Positives = 49/69 (71%)
 Frame = +3

Query: 15  HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIR 194
           H ++EVDV LSARGG+ G  G K  + E+T+++ R+GV+R E+   + YA+IDL    I+
Sbjct: 104 HLVREVDVRLSARGGELG-RGPKTSRCEITLFSKRHGVLRAEEDAESTYASIDLAAAIIK 162

Query: 195 AKLQKIKEK 221
            KL+KIKEK
Sbjct: 163 RKLRKIKEK 171

[27][TOP]
>UniRef100_Q2JS19 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
           JA-3-3Ab RepID=Q2JS19_SYNJA
          Length = 191

 Score = 50.8 bits (120), Expect(2) = 4e-10
 Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
 Frame = +3

Query: 6   NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLVC 182
           +F+    EVDV LS             Q  EVT+Y   NG V+R E++  NLYA+ID V 
Sbjct: 31  HFAQITSEVDVNLSVA---RNPRISANQSAEVTVYA--NGTVIRAEESSENLYASIDRVA 85

Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKEDV 272
           DK+  KL+K KE+    G    R  PK  V
Sbjct: 86  DKLARKLRKYKER---NGVHRIRHSPKTSV 112

 Score = 37.0 bits (84), Expect(2) = 4e-10
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           P  V+R+K   + P+TV+EA+  LE V H FYV
Sbjct: 132 PPEVVRTKYFAMPPMTVQEALHQLELVDHDFYV 164

[28][TOP]
>UniRef100_B9IDE9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IDE9_POPTR
          Length = 231

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 35/75 (46%), Positives = 51/75 (68%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH ++ VDV LS RGG+ G  G + ++ EVT++T R+GVVR E+    ++A+IDLV   I
Sbjct: 41  SHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSII 99

Query: 192 RAKLQKIKEKAISRG 236
           + KL+KIK+K    G
Sbjct: 100 QRKLRKIKDKESDHG 114

[29][TOP]
>UniRef100_A9PHY3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa
           RepID=A9PHY3_POPTR
          Length = 306

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 35/75 (46%), Positives = 51/75 (68%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           SH ++ VDV LS RGG+ G  G + ++ EVT++T R+GVVR E+    ++A+IDLV   I
Sbjct: 116 SHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSII 174

Query: 192 RAKLQKIKEKAISRG 236
           + KL+KIK+K    G
Sbjct: 175 QRKLRKIKDKESDHG 189

[30][TOP]
>UniRef100_Q10ZL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
           Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZL6_TRIEI
          Length = 215

 Score = 51.2 bits (121), Expect(2) = 1e-09
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
 Frame = +3

Query: 6   NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLVC 182
           +F     EVDV LS            +Q  EVTIY   NG V+R +++  NLYA+IDLV 
Sbjct: 30  HFQQLTTEVDVHLSVA---RNPRINPKQTAEVTIYA--NGTVIRAQESSENLYASIDLVA 84

Query: 183 DKIRAKLQKIKEKAISR 233
           DKI  +L+K KEK  S+
Sbjct: 85  DKIARQLRKYKEKRQSK 101

 Score = 35.0 bits (79), Expect(2) = 1e-09
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 316 TLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           T+ L + +  ++    +     P+ V+R+K   +  +TVEEA++ L+ + H FY+
Sbjct: 107 TVDLIESQPVVENLIGDRQAELPSEVVRTKYFPMPSMTVEEALEQLQLIDHDFYM 161

[31][TOP]
>UniRef100_B6G1P8 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
           13275 RepID=B6G1P8_9CLOT
          Length = 190

 Score = 58.9 bits (141), Expect(2) = 3e-09
 Identities = 40/95 (42%), Positives = 54/95 (56%)
 Frame = +3

Query: 27  EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
           EV VT+SA        GK  QKVEV I  +    +RVE+ ++NLY AIDLVCDK+  ++ 
Sbjct: 44  EVKVTVSA--------GKNRQKVEVMIPNVNGHTIRVEEEQDNLYPAIDLVCDKLSRQII 95

Query: 207 KIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVK 311
           K K+K  +R   PG    + +  EE  QE   EV+
Sbjct: 96  KYKDKFKTR--VPGNFSIRYEGIEELAQELDYEVE 128

 Score = 25.8 bits (55), Expect(2) = 3e-09
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           + R K   L P+++EEAI  +    H FY+
Sbjct: 134 IERRKKFNLKPMSIEEAILQMNLTDHDFYM 163

[32][TOP]
>UniRef100_Q31KN7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
           Tax=Synechococcus elongatus PCC 7942 RepID=Q31KN7_SYNE7
          Length = 207

 Score = 53.1 bits (126), Expect(2) = 4e-09
 Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLSARGGDTGTHGKKE--QKVEVTIYTLRNG-VVRVEDAENNLYAAID 173
           +++   L E+DV LS        H K    Q  EVTIY   NG V+R E+   NLYA+ID
Sbjct: 29  SHYQSFLTEIDVHLSV-----AKHAKSNPRQTAEVTIYA--NGTVIRAEECNENLYASID 81

Query: 174 LVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 278
           LV DKI  +L+K KEK   R    G+    E  D+
Sbjct: 82  LVSDKITRQLKKYKEKLRDR---KGQLSTAETADQ 113

 Score = 31.2 bits (69), Expect(2) = 4e-09
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           P +++R+K   +  +TVE+A+  L+ V H FY+
Sbjct: 132 PQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYM 164

[33][TOP]
>UniRef100_Q5N179 Light repressed protein A homolog n=1 Tax=Synechococcus elongatus
           PCC 6301 RepID=Q5N179_SYNP6
          Length = 207

 Score = 51.6 bits (122), Expect(2) = 1e-08
 Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLSARGGDTGTHGKKE--QKVEVTIYTLRNG-VVRVEDAENNLYAAID 173
           +++   L E+DV LS        H K    Q  EVTIY   NG V+R E+   NLYA+ID
Sbjct: 29  SHYQSFLTEIDVHLSV-----AKHAKSNPRQTAEVTIYA--NGTVIRAEECNENLYASID 81

Query: 174 LVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 278
           LV DKI  +L+K KE+   R    G+    E  D+
Sbjct: 82  LVSDKITRQLKKYKEELRDR---KGQLSTAETADQ 113

 Score = 31.2 bits (69), Expect(2) = 1e-08
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           P +++R+K   +  +TVE+A+  L+ V H FY+
Sbjct: 132 PQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYM 164

[34][TOP]
>UniRef100_C2D8Z3 Possible ribosome-associated inhibitor A n=1 Tax=Atopobium vaginae
           DSM 15829 RepID=C2D8Z3_9ACTN
          Length = 192

 Score = 50.4 bits (119), Expect(2) = 2e-08
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = +3

Query: 72  HGKKEQKV-EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG 248
           H   ++K  EVT+Y +RN VVRVE +  ++YAAID   DK+  +L+K K + I R     
Sbjct: 49  HSNPDRKTCEVTVY-VRNNVVRVEASSEDMYAAIDAASDKVTRQLRKYKTRIIDR---KQ 104

Query: 249 RAGPKEDVDEEDFQEYLKEVKMDTQLV 329
           R+        +D  + + EV  D  LV
Sbjct: 105 RSQAPAPAPSKDLSDLIDEVADDDMLV 131

 Score = 31.6 bits (70), Expect(2) = 2e-08
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           ++R K + L P+T EEA+   + +GH FYV
Sbjct: 130 LVREKYIDLHPMTEEEALVQTDLIGHDFYV 159

[35][TOP]
>UniRef100_A5GUZ2 Light repressed protein A homolog n=1 Tax=Synechococcus sp. RCC307
           RepID=A5GUZ2_SYNR3
          Length = 187

 Score = 41.2 bits (95), Expect(2) = 2e-08
 Identities = 25/78 (32%), Positives = 42/78 (53%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
           ++F+  ++E DV LS            +Q  EVT++     V+R ++   NLYA+IDLV 
Sbjct: 29  SHFNGMVQEADVHLSVARNPR----VPQQTAEVTLFA-SGTVIRAQERSQNLYASIDLVA 83

Query: 183 DKIRAKLQKIKEKAISRG 236
            K+  +LQ+ K++    G
Sbjct: 84  GKLARQLQRHKDRRQGHG 101

 Score = 40.4 bits (93), Expect(2) = 2e-08
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +1

Query: 340 EQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           + LQ + AEL    PA V+R K   + P++VEEAI  LE + H FYV
Sbjct: 118 DMLQGRHAEL----PAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYV 160

[36][TOP]
>UniRef100_A9KS11 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Clostridium phytofermentans ISDg RepID=A9KS11_CLOPH
          Length = 178

 Score = 48.5 bits (114), Expect(2) = 7e-08
 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
 Frame = +3

Query: 27  EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
           E+ VTLS          K  QK+EVTI  ++  +VR E   N++YA+IDLV + I  +L+
Sbjct: 36  EIHVTLSVE--------KDRQKIEVTI-PMKGNIVRAEQVSNDMYASIDLVEEVIERQLK 86

Query: 207 KIKEKAISRGAWPGRAGP-------KEDVDEED 284
           K K K            P        ED DEED
Sbjct: 87  KYKSKLKDMNQSAANFNPSFFEDVLNEDSDEED 119

 Score = 31.6 bits (70), Expect(2) = 7e-08
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 388 NVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           N+ R K   + P+  EEA   +E +GH+FYV
Sbjct: 121 NITRVKRFAMKPMDAEEACVQMELLGHNFYV 151

[37][TOP]
>UniRef100_B0A7Y1 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM
           16795 RepID=B0A7Y1_9CLOT
          Length = 187

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 32/71 (45%), Positives = 45/71 (63%)
 Frame = +3

Query: 9   FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188
           + H   EV VT+SAR        K +QK+EVTI  +   ++R ED+E NLYAAID+V DK
Sbjct: 36  YLHEDTEVKVTVSAR--------KAKQKIEVTIIPINGPIIRAEDSEENLYAAIDVVYDK 87

Query: 189 IRAKLQKIKEK 221
           +  +L++ K K
Sbjct: 88  LNKQLRRYKNK 98

[38][TOP]
>UniRef100_B1I6C1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Candidatus Desulforudis audaxviator MP104C
           RepID=B1I6C1_DESAP
          Length = 174

 Score = 47.8 bits (112), Expect(2) = 1e-07
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
           + F H    V V LS          K   +VEVT+  +   ++R E+   ++YA+IDLV 
Sbjct: 28  SKFEHHFGSVQVALSVE--------KDSHRVEVTV-PIDGMILRGEEVTGDMYASIDLVV 78

Query: 183 DKIRAKLQKIKEKAISRGAWPGRAG-PKEDVDEEDFQEY 296
           +K+  +L++ K K ++R   PG  G  +E   +ED +EY
Sbjct: 79  EKLEKQLERYKGKLLNRR--PGAGGVTREQETQEDEEEY 115

 Score = 31.6 bits (70), Expect(2) = 1e-07
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           ++R+K   L P+ V+EA+  +  +GHSF+V
Sbjct: 117 IVRTKRFALKPMPVDEAVMQMNLLGHSFFV 146

[39][TOP]
>UniRef100_UPI00017F60C6 putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
           QCD-23m63 RepID=UPI00017F60C6
          Length = 185

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 31/65 (47%), Positives = 42/65 (64%)
 Frame = +3

Query: 27  EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
           EV VT+SA+        K  QKVEVTI  +   ++R ED E++LYAAID+VCDK+  ++ 
Sbjct: 36  EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87

Query: 207 KIKEK 221
           K K K
Sbjct: 88  KYKTK 92

[40][TOP]
>UniRef100_UPI00017F5ACC putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
           ATCC 43255 RepID=UPI00017F5ACC
          Length = 185

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 31/65 (47%), Positives = 42/65 (64%)
 Frame = +3

Query: 27  EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
           EV VT+SA+        K  QKVEVTI  +   ++R ED E++LYAAID+VCDK+  ++ 
Sbjct: 36  EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87

Query: 207 KIKEK 221
           K K K
Sbjct: 88  KYKTK 92

[41][TOP]
>UniRef100_C9XLM7 Putative sigma 54 modulation protein n=3 Tax=Clostridium difficile
           RepID=C9XLM7_CLODI
          Length = 187

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 31/65 (47%), Positives = 42/65 (64%)
 Frame = +3

Query: 27  EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
           EV VT+SA+        K  QKVEVTI  +   ++R ED E++LYAAID+VCDK+  ++ 
Sbjct: 36  EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87

Query: 207 KIKEK 221
           K K K
Sbjct: 88  KYKTK 92

[42][TOP]
>UniRef100_Q8DKM6 LrtA protein n=1 Tax=Thermosynechococcus elongatus BP-1
           RepID=Q8DKM6_THEEB
          Length = 209

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLV 179
           ++F + + EVDV LS AR   T      +Q  EVT++ +   V+R E++  NLYA+IDLV
Sbjct: 29  SHFQNVINEVDVHLSVARNRSTAP----KQTAEVTVF-VNGSVIRAEESSENLYASIDLV 83

Query: 180 CDKIRAKLQKIKEK 221
            DKI  KL+K+KEK
Sbjct: 84  ADKIARKLRKLKEK 97

[43][TOP]
>UniRef100_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus
           tauri RepID=Q00W70_OSTTA
          Length = 184

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
 Frame = +3

Query: 12  SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
           S  ++EVDV  SARGG+ G+ G  E K EVT+   R   +  +    NLYA ID   D +
Sbjct: 82  SRDIREVDVRCSARGGE-GSKGGVEHKTEVTVLMTRGPTLHADGVGENLYATIDQCADIV 140

Query: 192 RAKLQKIKEKAISRGAWPGR--AGPK------EDVDEED 284
              ++K KEK   +GA      A PK      EDVD +D
Sbjct: 141 TRSIRKHKEKHGGKGARHAAHDASPKEALLDAEDVDGDD 179

[44][TOP]
>UniRef100_C9BUA9 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Enterococcus faecium RepID=C9BUA9_ENTFC
          Length = 183

 Score = 40.4 bits (93), Expect(2) = 7e-07
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = +3

Query: 78  KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
           +K  KVEVTI  L   V+R E+   +LYA+IDLV DK+  +++K K K
Sbjct: 49  EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95

 Score = 36.2 bits (82), Expect(2) = 7e-07
 Identities = 20/72 (27%), Positives = 42/72 (58%)
 Frame = +1

Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444
           +T + R SR T   +    +LF++E++ +   +EL+      ++R+K + L P+  EEA+
Sbjct: 93  KTKINRKSRETGMNTADATALFNEEDENEND-SELD------IVRTKRLSLKPMDSEEAV 145

Query: 445 DALEAVGHSFYV 480
             +  +GH+F++
Sbjct: 146 LQMNMLGHNFFI 157

[45][TOP]
>UniRef100_C9BP47 Sigma 54 modulation protein/ribosomal protein S30EA n=2
           Tax=Enterococcus faecium RepID=C9BP47_ENTFC
          Length = 183

 Score = 40.4 bits (93), Expect(2) = 7e-07
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = +3

Query: 78  KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
           +K  KVEVTI  L   V+R E+   +LYA+IDLV DK+  +++K K K
Sbjct: 49  EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95

 Score = 36.2 bits (82), Expect(2) = 7e-07
 Identities = 20/72 (27%), Positives = 42/72 (58%)
 Frame = +1

Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444
           +T + R SR T   +    +LF++E++ +   +EL+      ++R+K + L P+  EEA+
Sbjct: 93  KTKINRKSRETGMNTADAAALFNEEDENEND-SELD------IVRTKRLSLKPMDSEEAV 145

Query: 445 DALEAVGHSFYV 480
             +  +GH+F++
Sbjct: 146 LQMNMLGHNFFI 157

[46][TOP]
>UniRef100_C9B3Z6 Sigma 54 modulation protein/ribosomal protein S30EA n=3
           Tax=Enterococcus faecium RepID=C9B3Z6_ENTFC
          Length = 183

 Score = 40.4 bits (93), Expect(2) = 7e-07
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = +3

Query: 78  KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
           +K  KVEVTI  L   V+R E+   +LYA+IDLV DK+  +++K K K
Sbjct: 49  EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95

 Score = 36.2 bits (82), Expect(2) = 7e-07
 Identities = 20/72 (27%), Positives = 42/72 (58%)
 Frame = +1

Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444
           +T + R SR T   +    +LF++E++ +   +EL+      ++R+K + L P+  EEA+
Sbjct: 93  KTKINRKSRETGMNTANAAALFNEEDENEND-SELD------IVRTKRLSLKPMDSEEAV 145

Query: 445 DALEAVGHSFYV 480
             +  +GH+F++
Sbjct: 146 LQMNMLGHNFFI 157

[47][TOP]
>UniRef100_B9NF07 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NF07_POPTR
          Length = 127

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 31/72 (43%), Positives = 44/72 (61%)
 Frame = +3

Query: 9   FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188
           FSH ++EVD  LS RGG+ G   +        I   R+GVVR E+    +YA IDLV   
Sbjct: 22  FSHLVREVDARLSVRGGELGKGPR--------IRKCRHGVVRAEEDSETIYATIDLVLSI 73

Query: 189 IRAKLQKIKEKA 224
           I++KL+K+KE++
Sbjct: 74  IQSKLRKMKEES 85

[48][TOP]
>UniRef100_C2HCP0 Ribosome-associated inhibitor protein Y n=4 Tax=Enterococcus
           faecium RepID=C2HCP0_ENTFC
          Length = 183

 Score = 40.4 bits (93), Expect(2) = 2e-06
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = +3

Query: 78  KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
           +K  KVEVTI  L   V+R E+   +LYA+IDLV DK+  +++K K K
Sbjct: 49  EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95

 Score = 35.0 bits (79), Expect(2) = 2e-06
 Identities = 21/72 (29%), Positives = 40/72 (55%)
 Frame = +1

Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444
           +T + R SR T   +     LF+ EE+ +   +EL+      ++R+K + L P+  EEA+
Sbjct: 93  KTKINRKSRETGMNTADAAVLFNGEEENEND-SELD------IVRTKRLSLKPMDSEEAV 145

Query: 445 DALEAVGHSFYV 480
             +  +GH+F++
Sbjct: 146 LQMNMLGHNFFI 157

[49][TOP]
>UniRef100_B5YF17 Ribosomal subunit interface protein n=1 Tax=Dictyoglomus
           thermophilum H-6-12 RepID=B5YF17_DICT6
          Length = 179

 Score = 43.1 bits (100), Expect(2) = 3e-06
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = +3

Query: 3   ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLV 179
           + F   ++ ++V  S    +    G K  +VEVTI    NG +++  +A  +   +IDLV
Sbjct: 28  SRFFDNIENIEVLFSE---EDWKDGSKRHRVEVTIKA--NGRIIKASEANQDFRTSIDLV 82

Query: 180 CDKIRAKLQKIKEKAISRG 236
            DK+  +L+++KEK + +G
Sbjct: 83  VDKLETQLKRLKEKLVDKG 101

 Score = 31.6 bits (70), Expect(2) = 3e-06
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 334 KEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           + E ++   AE        V++ K  +L P+ VEEAI  +E +GH F++
Sbjct: 103 RAESIREILAEKEVEEKPQVVKVKRFLLKPMDVEEAILQMELLGHDFFI 151

[50][TOP]
>UniRef100_B7CAG7 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
           3989 RepID=B7CAG7_9FIRM
          Length = 177

 Score = 40.8 bits (94), Expect(2) = 3e-06
 Identities = 20/46 (43%), Positives = 33/46 (71%)
 Frame = +3

Query: 84  EQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
           +QK+EVTI T R  ++R E  +++LYAAIDL  DK+  ++++ K +
Sbjct: 49  KQKIEVTIPT-RYAILRAEVVDDDLYAAIDLAVDKLEDQIRRTKTR 93

 Score = 33.5 bits (75), Expect(2) = 3e-06
 Identities = 18/69 (26%), Positives = 39/69 (56%)
 Frame = +1

Query: 274 MRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDAL 453
           +RRT    +R+++ +L+    E  L  +      +    V+R+K++V   ++++EAI  +
Sbjct: 87  IRRTKTRLTRKNKESLA----EAFLDHELFNDEEVDDDEVVRTKSIVPKEMSLDEAIMKM 142

Query: 454 EAVGHSFYV 480
           E +GH F++
Sbjct: 143 ELLGHDFFI 151

[51][TOP]
>UniRef100_C1CWW9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Deinococcus deserti VCD115 RepID=C1CWW9_DEIDV
          Length = 188

 Score = 41.6 bits (96), Expect(2) = 6e-06
 Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
 Frame = +3

Query: 9   FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188
           ++  + +  VTL+ R  D    G++  +VEV +  + NG++R E+  +++YAAID   D 
Sbjct: 31  YNDQITDARVTLTVR--DVRDAGRRN-RVEVQL-NVPNGIIRAEEHHSDMYAAIDKASDV 86

Query: 189 IRAKLQKIKEKAISRG----AWPGRAGPKEDVDE--EDFQEYLKEV 308
           +  +L+K K + + +       PG    + DV+   +D  E++ E+
Sbjct: 87  LERQLRKFKTRYMKQRHETVPQPGPGPAEADVNAGLDDVSEFMPEI 132

 Score = 32.0 bits (71), Expect(2) = 6e-06
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           ++R K   + P++ E+A+  +EA+GH FYV
Sbjct: 132 IVRQKRFDMRPMSPEDAVTQMEALGHDFYV 161

[52][TOP]
>UniRef100_B7KLI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Cyanothece sp. PCC 7424 RepID=B7KLI5_CYAP7
          Length = 199

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = +3

Query: 6   NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLVC 182
           +F     +VDV LS          + + K EVT+Y   NG V+R ++   NLYA+IDLV 
Sbjct: 30  HFQTLTTKVDVHLSVA---KNARIQNKHKAEVTVYA--NGTVIRAQEGSENLYASIDLVS 84

Query: 183 DKIRAKLQKIKEKAISRGAW-PGRAGPKEDVDEEDFQEYL 299
           DKI  +L+K KE+ + + A  P +AG  E V +E  +E L
Sbjct: 85  DKIARQLRKYKERKLEQNAHSPVKAG--EVVQQETIEENL 122

[53][TOP]
>UniRef100_Q1IYK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
           Tax=Deinococcus geothermalis DSM 11300
           RepID=Q1IYK5_DEIGD
          Length = 186

 Score = 40.0 bits (92), Expect(2) = 7e-06
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +3

Query: 9   FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188
           FS  + +  V L+ R  D    G++  +VEV +  + NG++R E+   ++YAAID   D 
Sbjct: 31  FSDQITDARVVLTVR--DVRDAGRRN-RVEVQL-NVPNGIIRAEEHHADMYAAIDRASDV 86

Query: 189 IRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLV 329
           +  +L+K K K + R        P+  + E D    L + +   ++V
Sbjct: 87  LERQLRKFKTKYL-RHRQEAAPPPQPGLAEADVNAGLDDTEFRPEIV 132

 Score = 33.1 bits (74), Expect(2) = 7e-06
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +1

Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           ++R+K   L P++ E+A+  +EA+GH FYV
Sbjct: 131 IVRTKRFDLRPMSPEDAVTQMEALGHDFYV 160

[54][TOP]
>UniRef100_C0Z6T8 Putative uncharacterized protein yvyD n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0Z6T8_BREBN
          Length = 185

 Score = 43.1 bits (100), Expect(2) = 8e-06
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
 Frame = +3

Query: 27  EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
           EV VT+    G+ GT       +EVTI  L   ++R E+   ++YAAIDLV +K+  +++
Sbjct: 38  EVQVTMHVHRGE-GT-------IEVTI-PLSGVIIRAEETHEDMYAAIDLVVEKLERQIR 88

Query: 207 KIKEKAIS--RGAWPGRAGPKE---------DVDEED 284
           K K K +   R    GR   +E         DVDEED
Sbjct: 89  KHKTKLMRKLRVDSTGRIAQRESQPVAVMIPDVDEED 125

 Score = 30.0 bits (66), Expect(2) = 8e-06
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 388 NVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           +++R+K   L P+  +EA+  ++ +GHSF+V
Sbjct: 129 DIVRTKRFDLKPMDAQEAVMQMDMLGHSFFV 159

[55][TOP]
>UniRef100_Q03GZ9 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
           Tax=Pediococcus pentosaceus ATCC 25745
           RepID=Q03GZ9_PEDPA
          Length = 184

 Score = 42.0 bits (97), Expect(2) = 1e-05
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
 Frame = +3

Query: 81  KEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG- 257
           K  KVEVTI  L   V+R E+   +LYA++DLV DK+  +L+K K K   +    G  G 
Sbjct: 50  KTAKVEVTI-PLPYLVLRAEETSPDLYASVDLVTDKLERQLRKYKTKINRKSRETGYKGV 108

Query: 258 --PKEDVDEED 284
             P  D+ E +
Sbjct: 109 EIPSGDIVENE 119

 Score = 30.8 bits (68), Expect(2) = 1e-05
 Identities = 12/31 (38%), Positives = 23/31 (74%)
 Frame = +1

Query: 388 NVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           +++R+K V L P+  EEAI  ++ +GH+F++
Sbjct: 126 DIVRTKQVSLKPMGSEEAILQMDMLGHNFFI 156

[56][TOP]
>UniRef100_Q5M196 Ribosomal subunit interface protein, ribosomal protein S30AE family
           n=2 Tax=Streptococcus thermophilus RepID=Q5M196_STRT1
          Length = 182

 Score = 38.1 bits (87), Expect(2) = 1e-05
 Identities = 22/48 (45%), Positives = 31/48 (64%)
 Frame = +3

Query: 78  KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
           +K  KVEVTI T  +  +R ED   ++Y +IDLV DKI  +++K K K
Sbjct: 49  EKTAKVEVTIPT-GSVTLRAEDVSLDMYGSIDLVVDKIARQIRKNKTK 95

 Score = 34.7 bits (78), Expect(2) = 1e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 328 FDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
           F+KEE  +    E        V+R+K + L P+ VEEAI  +E +GH F++
Sbjct: 114 FNKEEVEEAPAVE--------VVRTKNIELKPMDVEEAILQMELLGHDFFI 156