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[1][TOP]
>UniRef100_A8J8B2 Plastid-specific ribosomal protein 1 n=1 Tax=Chlamydomonas
reinhardtii RepID=A8J8B2_CHLRE
Length = 286
Score = 218 bits (554), Expect(2) = 2e-77
Identities = 108/108 (100%), Positives = 108/108 (100%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC
Sbjct: 98 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 157
Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL 326
DKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL
Sbjct: 158 DKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQL 205
Score = 95.5 bits (236), Expect(2) = 2e-77
Identities = 51/53 (96%), Positives = 51/53 (96%), Gaps = 1/53 (1%)
Frame = +1
Query: 325 LFDKEEQLQRQFAELNRI*PANVMRSKTVVL-DPITVEEAIDALEAVGHSFYV 480
LFDKEEQLQRQFAELNRI PANVMRSKTVVL DPITVEEAIDALEAVGHSFYV
Sbjct: 205 LFDKEEQLQRQFAELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYV 257
[2][TOP]
>UniRef100_Q5MCR1 Chloroplast-specific ribosome-associated protein n=1 Tax=Volvox
carteri f. nagariensis RepID=Q5MCR1_VOLCA
Length = 232
Score = 173 bits (438), Expect = 6e-42
Identities = 88/132 (66%), Positives = 107/132 (81%)
Frame = +3
Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
NF+HTLKEVDVTLSARGGDTGTHGKKEQKV+VTI+TLRNGVVRVED E+NLYAAIDLVCD
Sbjct: 103 NFAHTLKEVDVTLSARGGDTGTHGKKEQKVDVTIFTLRNGVVRVEDRESNLYAAIDLVCD 162
Query: 186 KIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLV*QGGAAAAPVRR 365
KIR+KL ++KEKAI++G WPG+AGPKE+V+ + +++TQ + QGG A+ V
Sbjct: 163 KIRSKLTRVKEKAITKGKWPGKAGPKENVEGRRTSKSTSRCQVETQCL-QGGRASEAVAE 221
Query: 366 AEPHLTRQRHAL 401
T+QRHAL
Sbjct: 222 LTA-TTQQRHAL 232
[3][TOP]
>UniRef100_B9SEK8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1
Tax=Ricinus communis RepID=B9SEK8_RICCO
Length = 311
Score = 73.2 bits (178), Expect(2) = 4e-15
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 17/116 (14%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH ++EVDV LS RGG+ G G K ++ EVT++T ++GV+R E+ +YA+IDLV I
Sbjct: 119 SHLVREVDVRLSVRGGEFGK-GPKIRRCEVTLFTKKHGVIRAEEDAETIYASIDLVSSII 177
Query: 192 RAKLQKIKEKAISRGAW-----------PGRAGPKEDVDE------EDFQEYLKEV 308
+ KL+KIKEK G P K+D DE ++ ++Y+ EV
Sbjct: 178 QRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDEDEDYIDEV 233
Score = 31.6 bits (70), Expect(2) = 4e-15
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFY 477
V+R+K + P+TV EAI+ L+ V H FY
Sbjct: 233 VVRTKYFDMPPLTVSEAIEQLKNVDHDFY 261
[4][TOP]
>UniRef100_A9TA00 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9TA00_PHYPA
Length = 297
Score = 74.7 bits (182), Expect(2) = 1e-14
Identities = 41/86 (47%), Positives = 58/86 (67%)
Frame = +3
Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
N S +KEVDV +S RGG+TG G++ Q+ EVT++T ++GVVR E+ ++YA+ID V D
Sbjct: 117 NQSALVKEVDVRMSVRGGETG-RGERLQRCEVTLFTKKHGVVRAEEEAESMYASIDRVSD 175
Query: 186 KIRAKLQKIKEKAISRGAWPGRAGPK 263
I KL+KIKEK G P + P+
Sbjct: 176 VISRKLRKIKEKDGGHGR-PAKYSPR 200
Score = 28.1 bits (61), Expect(2) = 1e-14
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFY 477
P V+R+K + P+ EA++ L VGH FY
Sbjct: 224 PDEVVRTKYFEMRPMKPLEALEQLVNVGHDFY 255
[5][TOP]
>UniRef100_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LMC5_PICSI
Length = 321
Score = 72.4 bits (176), Expect(2) = 5e-14
Identities = 43/104 (41%), Positives = 62/104 (59%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
++ ++EVDV LS RGG+ G G K ++ EVT++T ++GVVR E+ +YA+ID+V D I
Sbjct: 119 ANLVREVDVRLSIRGGEVGK-GPKIRRCEVTLFTKKHGVVRAEEEAETIYASIDIVSDII 177
Query: 192 RAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQ 323
R KL+KIKEK G P + + E L V MD +
Sbjct: 178 RRKLRKIKEKD------GGHGRPSKMRKQPKLGELLSTVVMDVK 215
Score = 28.5 bits (62), Expect(2) = 5e-14
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 325 LFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFY 477
L D EE + +L+ V+R+K + P++ EEA++ L V H FY
Sbjct: 225 LADVEEMRYEKIDDLSD----EVVRTKYFEMPPMSPEEALEQLMNVDHDFY 271
[6][TOP]
>UniRef100_C1EFG3 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFG3_9CHLO
Length = 284
Score = 79.7 bits (195), Expect = 9e-14
Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 6/107 (5%)
Frame = +3
Query: 15 HTLKEVDVTLSARGG-DTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
H ++EVDV S+RGG D T G QK EVT+YT RNG++R E+ ++LYA+ID V DK+
Sbjct: 113 HDVREVDVRCSSRGGADKKTPGGALQKTEVTVYT-RNGIIRSEEEADDLYASIDAVSDKL 171
Query: 192 RAKLQKIKEKAISRGAWPGRAGPKEDVDE--EDFQ---EYLKEVKMD 317
KL+K+KEK IS+ + PK D E+ Q E L + MD
Sbjct: 172 ERKLRKVKEKKISKRPKHNKNAPKAQTDAIVEEMQAADEALADESMD 218
[7][TOP]
>UniRef100_P19954 30S ribosomal protein 1, chloroplastic n=1 Tax=Spinacia oleracea
RepID=RR30_SPIOL
Length = 302
Score = 75.1 bits (183), Expect = 2e-12
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
A SH ++EVDV LSARGGD + G K ++ EVT++T R+GV+R E+ +LY++IDLV
Sbjct: 103 AKHSHLVREVDVRLSARGGDL-SKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVS 161
Query: 183 DKIRAKLQKIKEKAISRG 236
I+ KL+KIK+K G
Sbjct: 162 SIIQRKLRKIKDKVSDHG 179
[8][TOP]
>UniRef100_C1N7A9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N7A9_9CHLO
Length = 245
Score = 73.9 bits (180), Expect = 5e-12
Identities = 44/83 (53%), Positives = 54/83 (65%)
Frame = +3
Query: 15 HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIR 194
H ++EVDVT SAR G Q +VT+YT RNGVVR E+ +NLYA+ID V DKI
Sbjct: 79 HDVREVDVTCSARSEKQ--QGGDLQMTQVTVYT-RNGVVRSEEEADNLYASIDAVSDKIE 135
Query: 195 AKLQKIKEKAISRGAWPGRAGPK 263
KL+KIKEK S+ A +A PK
Sbjct: 136 RKLRKIKEKKNSKKAGKTKANPK 158
[9][TOP]
>UniRef100_A9RWK9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWK9_PHYPA
Length = 221
Score = 73.6 bits (179), Expect = 7e-12
Identities = 39/72 (54%), Positives = 52/72 (72%)
Frame = +3
Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
N S +KEVDV +S RGG+TG GK Q+ EVT++T ++GVVR E+ ++YA+ID V D
Sbjct: 39 NQSALVKEVDVRMSVRGGETGRGGKL-QRCEVTLFTKKHGVVRAEEEAESMYASIDRVSD 97
Query: 186 KIRAKLQKIKEK 221
I KL+KIKEK
Sbjct: 98 VISRKLRKIKEK 109
[10][TOP]
>UniRef100_B9I297 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I297_POPTR
Length = 306
Score = 72.4 bits (176), Expect = 1e-11
Identities = 38/75 (50%), Positives = 52/75 (69%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH ++EVDV LS RGG+ G G + ++ EVT++T R+GVVR E+ +YA+IDLV I
Sbjct: 117 SHLVREVDVRLSVRGGELGK-GPRIRRCEVTLFTNRHGVVRAEEDAETIYASIDLVSSII 175
Query: 192 RAKLQKIKEKAISRG 236
+ KL+KIKEK G
Sbjct: 176 QRKLRKIKEKESDHG 190
[11][TOP]
>UniRef100_Q672Q2 Chloroplast-specific ribosomal protein n=1 Tax=Solanum lycopersicum
RepID=Q672Q2_SOLLC
Length = 311
Score = 70.9 bits (172), Expect = 4e-11
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH +EVDV LS RGG+ G G K ++ EVT++T ++GV+R E+ ++Y +ID+V I
Sbjct: 116 SHLAREVDVRLSVRGGELGK-GPKIRRCEVTLFTKKHGVIRAEEDGESIYGSIDMVSSII 174
Query: 192 RAKLQKIKEKAISRG 236
+ KL+KIKEK RG
Sbjct: 175 QRKLRKIKEKDSDRG 189
[12][TOP]
>UniRef100_C6TFU4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6TFU4_SOYBN
Length = 208
Score = 70.9 bits (172), Expect = 4e-11
Identities = 36/75 (48%), Positives = 49/75 (65%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH ++EVDV LS RGG G + ++ EVT++T R+GVVR E+ + Y +IDLV I
Sbjct: 101 SHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSII 160
Query: 192 RAKLQKIKEKAISRG 236
+ KL+KIKEK G
Sbjct: 161 QRKLRKIKEKVSDHG 175
[13][TOP]
>UniRef100_C6T7E3 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T7E3_SOYBN
Length = 291
Score = 70.9 bits (172), Expect = 4e-11
Identities = 36/75 (48%), Positives = 49/75 (65%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH ++EVDV LS RGG G + ++ EVT++T R+GVVR E+ + Y +IDLV I
Sbjct: 101 SHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSII 160
Query: 192 RAKLQKIKEKAISRG 236
+ KL+KIKEK G
Sbjct: 161 QRKLRKIKEKVSDHG 175
[14][TOP]
>UniRef100_UPI0001984F94 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984F94
Length = 298
Score = 70.5 bits (171), Expect = 6e-11
Identities = 37/75 (49%), Positives = 51/75 (68%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH ++EVDV LS RGG+ G G K ++ EVT++T ++GVVR E+ LY +ID+V I
Sbjct: 109 SHLVREVDVRLSIRGGELGK-GPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSII 167
Query: 192 RAKLQKIKEKAISRG 236
+ KL+KIKEK G
Sbjct: 168 QRKLRKIKEKDSDHG 182
[15][TOP]
>UniRef100_A7QEV5 Chromosome chr16 scaffold_86, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QEV5_VITVI
Length = 230
Score = 70.5 bits (171), Expect = 6e-11
Identities = 37/75 (49%), Positives = 51/75 (68%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH ++EVDV LS RGG+ G G K ++ EVT++T ++GVVR E+ LY +ID+V I
Sbjct: 41 SHLVREVDVRLSIRGGELGK-GPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSII 99
Query: 192 RAKLQKIKEKAISRG 236
+ KL+KIKEK G
Sbjct: 100 QRKLRKIKEKDSDHG 114
[16][TOP]
>UniRef100_Q9FLV3 Similarity to ribosomal protein 30S subunit n=2 Tax=Arabidopsis
thaliana RepID=Q9FLV3_ARATH
Length = 365
Score = 69.7 bits (169), Expect = 1e-10
Identities = 37/75 (49%), Positives = 51/75 (68%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH ++EVDV LS RGG+ G G + ++ EVT++T ++GVVR E+ +YA IDLV I
Sbjct: 170 SHLVREVDVRLSVRGGEFGK-GPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTII 228
Query: 192 RAKLQKIKEKAISRG 236
+ KL+KIKEK G
Sbjct: 229 QRKLRKIKEKDSDHG 243
[17][TOP]
>UniRef100_Q84M68 Os03g0856500 protein n=3 Tax=Oryza sativa RepID=Q84M68_ORYSJ
Length = 309
Score = 69.7 bits (169), Expect = 1e-10
Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
A S +KEVDV LSARGG+ + G K + E+T++T R+GV+R E+ + YA+IDL
Sbjct: 109 AKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLAS 167
Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVK 311
I+ KL+KIKEK G P D +++D Q LK+++
Sbjct: 168 SIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLE 217
[18][TOP]
>UniRef100_Q10AC8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q10AC8_ORYSJ
Length = 241
Score = 69.7 bits (169), Expect = 1e-10
Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
A S +KEVDV LSARGG+ + G K + E+T++T R+GV+R E+ + YA+IDL
Sbjct: 109 AKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLAS 167
Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVK 311
I+ KL+KIKEK G P D +++D Q LK+++
Sbjct: 168 SIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLE 217
[19][TOP]
>UniRef100_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
RepID=C6YXL0_ORYSJ
Length = 321
Score = 69.7 bits (169), Expect = 1e-10
Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
A S +KEVDV LSARGG+ + G K + E+T++T R+GV+R E+ + YA+IDL
Sbjct: 109 AKHSQLVKEVDVRLSARGGEL-SRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLAS 167
Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKE-------DVDEEDFQEYLKEVK 311
I+ KL+KIKEK G P D +++D Q LK+++
Sbjct: 168 SIIKRKLRKIKEKETDVRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLE 217
[20][TOP]
>UniRef100_C9EFD1 Chloroplast ribosomal protein (Fragment) n=1 Tax=Solanum tuberosum
RepID=C9EFD1_SOLTU
Length = 280
Score = 69.3 bits (168), Expect = 1e-10
Identities = 35/75 (46%), Positives = 51/75 (68%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH +EVDV LS RGG+ G G K ++ EVT++T ++GV+R E+ ++Y +ID+V I
Sbjct: 88 SHLAREVDVRLSVRGGELGK-GPKIRRCEVTLFTKKHGVIRAEEDAESIYGSIDMVSSII 146
Query: 192 RAKLQKIKEKAISRG 236
+ KL+KIKEK G
Sbjct: 147 QRKLRKIKEKDSDHG 161
[21][TOP]
>UniRef100_B6TYP8 Plastid-specific 30S ribosomal protein 1 n=1 Tax=Zea mays
RepID=B6TYP8_MAIZE
Length = 309
Score = 69.3 bits (168), Expect = 1e-10
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = +3
Query: 15 HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIR 194
H ++EVDV LSARGG+ G G K + E+T++T R+GV+R E+ + YA+IDL ++
Sbjct: 104 HLVREVDVRLSARGGELG-RGPKTSRCEITLFTKRHGVLRAEEDAESTYASIDLAAAIVK 162
Query: 195 AKLQKIKEK 221
KL+KIKEK
Sbjct: 163 RKLRKIKEK 171
[22][TOP]
>UniRef100_A9PJW3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa x
Populus deltoides RepID=A9PJW3_9ROSI
Length = 268
Score = 68.6 bits (166), Expect = 2e-10
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 14/113 (12%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH ++ VDV LS RGG+ G G + ++ EVT++T R+GVVR E+ +YA+IDL I
Sbjct: 116 SHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETIYASIDLASSII 174
Query: 192 RAKLQKIKEKAISRGAW-----------PGRAGPKEDVDE---EDFQEYLKEV 308
+ KL+KIK+K G P ++D DE ++ ++Y++EV
Sbjct: 175 QRKLRKIKDKESDHGRHMKGFNRLKVREPMHQVVEDDADEVSQQEDEDYIEEV 227
[23][TOP]
>UniRef100_UPI00017F5F53 putative RNA-binding protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F5F53
Length = 183
Score = 58.9 bits (141), Expect(2) = 2e-10
Identities = 31/72 (43%), Positives = 45/72 (62%)
Frame = +3
Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
N+ H +V VT+SAR K QK+EVTI T+ ++R ED + NLY AID+V D
Sbjct: 29 NYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD 80
Query: 186 KIRAKLQKIKEK 221
K+ +L+K K++
Sbjct: 81 KLSKQLKKYKKR 92
Score = 29.6 bits (65), Expect(2) = 2e-10
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 319 LSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
++L D++E + EL + R K + P++ EEA+ +E +GH FY+
Sbjct: 110 INLADEQEDYGDENQELV------IQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157
[24][TOP]
>UniRef100_C9XIR4 Putative RNA-binding protein n=3 Tax=Clostridium difficile
RepID=C9XIR4_CLODI
Length = 183
Score = 58.9 bits (141), Expect(2) = 2e-10
Identities = 31/72 (43%), Positives = 45/72 (62%)
Frame = +3
Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
N+ H +V VT+SAR K QK+EVTI T+ ++R ED + NLY AID+V D
Sbjct: 29 NYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD 80
Query: 186 KIRAKLQKIKEK 221
K+ +L+K K++
Sbjct: 81 KLSKQLKKYKKR 92
Score = 29.6 bits (65), Expect(2) = 2e-10
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 319 LSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
++L D++E + EL + R K + P++ EEA+ +E +GH FY+
Sbjct: 110 INLADEQEDYGDENQELV------IQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157
[25][TOP]
>UniRef100_Q18CN1 Putative RNA-binding protein n=1 Tax=Clostridium difficile 630
RepID=Q18CN1_CLOD6
Length = 183
Score = 58.9 bits (141), Expect(2) = 2e-10
Identities = 31/72 (43%), Positives = 45/72 (62%)
Frame = +3
Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCD 185
N+ H +V VT+SAR K QK+EVTI T+ ++R ED + NLY AID+V D
Sbjct: 29 NYIHPDTDVKVTVSAR--------KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD 80
Query: 186 KIRAKLQKIKEK 221
K+ +L+K K++
Sbjct: 81 KLSKQLKKYKKR 92
Score = 29.6 bits (65), Expect(2) = 2e-10
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 319 LSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
++L D++E + EL + R K + P++ EEA+ +E +GH FY+
Sbjct: 110 INLADEQEDYGDENQELV------IQRRKKFSVKPMSEEEAVLQMELIGHDFYM 157
[26][TOP]
>UniRef100_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
bicolor RepID=C5WRX8_SORBI
Length = 310
Score = 68.2 bits (165), Expect = 3e-10
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = +3
Query: 15 HTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIR 194
H ++EVDV LSARGG+ G G K + E+T+++ R+GV+R E+ + YA+IDL I+
Sbjct: 104 HLVREVDVRLSARGGELG-RGPKTSRCEITLFSKRHGVLRAEEDAESTYASIDLAAAIIK 162
Query: 195 AKLQKIKEK 221
KL+KIKEK
Sbjct: 163 RKLRKIKEK 171
[27][TOP]
>UniRef100_Q2JS19 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=Q2JS19_SYNJA
Length = 191
Score = 50.8 bits (120), Expect(2) = 4e-10
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLVC 182
+F+ EVDV LS Q EVT+Y NG V+R E++ NLYA+ID V
Sbjct: 31 HFAQITSEVDVNLSVA---RNPRISANQSAEVTVYA--NGTVIRAEESSENLYASIDRVA 85
Query: 183 DKIRAKLQKIKEKAISRGAWPGRAGPKEDV 272
DK+ KL+K KE+ G R PK V
Sbjct: 86 DKLARKLRKYKER---NGVHRIRHSPKTSV 112
Score = 37.0 bits (84), Expect(2) = 4e-10
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
P V+R+K + P+TV+EA+ LE V H FYV
Sbjct: 132 PPEVVRTKYFAMPPMTVQEALHQLELVDHDFYV 164
[28][TOP]
>UniRef100_B9IDE9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IDE9_POPTR
Length = 231
Score = 67.0 bits (162), Expect = 6e-10
Identities = 35/75 (46%), Positives = 51/75 (68%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH ++ VDV LS RGG+ G G + ++ EVT++T R+GVVR E+ ++A+IDLV I
Sbjct: 41 SHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSII 99
Query: 192 RAKLQKIKEKAISRG 236
+ KL+KIK+K G
Sbjct: 100 QRKLRKIKDKESDHG 114
[29][TOP]
>UniRef100_A9PHY3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa
RepID=A9PHY3_POPTR
Length = 306
Score = 67.0 bits (162), Expect = 6e-10
Identities = 35/75 (46%), Positives = 51/75 (68%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
SH ++ VDV LS RGG+ G G + ++ EVT++T R+GVVR E+ ++A+IDLV I
Sbjct: 116 SHLVRGVDVRLSVRGGELGK-GPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSII 174
Query: 192 RAKLQKIKEKAISRG 236
+ KL+KIK+K G
Sbjct: 175 QRKLRKIKDKESDHG 189
[30][TOP]
>UniRef100_Q10ZL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZL6_TRIEI
Length = 215
Score = 51.2 bits (121), Expect(2) = 1e-09
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +3
Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLVC 182
+F EVDV LS +Q EVTIY NG V+R +++ NLYA+IDLV
Sbjct: 30 HFQQLTTEVDVHLSVA---RNPRINPKQTAEVTIYA--NGTVIRAQESSENLYASIDLVA 84
Query: 183 DKIRAKLQKIKEKAISR 233
DKI +L+K KEK S+
Sbjct: 85 DKIARQLRKYKEKRQSK 101
Score = 35.0 bits (79), Expect(2) = 1e-09
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 316 TLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
T+ L + + ++ + P+ V+R+K + +TVEEA++ L+ + H FY+
Sbjct: 107 TVDLIESQPVVENLIGDRQAELPSEVVRTKYFPMPSMTVEEALEQLQLIDHDFYM 161
[31][TOP]
>UniRef100_B6G1P8 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6G1P8_9CLOT
Length = 190
Score = 58.9 bits (141), Expect(2) = 3e-09
Identities = 40/95 (42%), Positives = 54/95 (56%)
Frame = +3
Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
EV VT+SA GK QKVEV I + +RVE+ ++NLY AIDLVCDK+ ++
Sbjct: 44 EVKVTVSA--------GKNRQKVEVMIPNVNGHTIRVEEEQDNLYPAIDLVCDKLSRQII 95
Query: 207 KIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVK 311
K K+K +R PG + + EE QE EV+
Sbjct: 96 KYKDKFKTR--VPGNFSIRYEGIEELAQELDYEVE 128
Score = 25.8 bits (55), Expect(2) = 3e-09
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
+ R K L P+++EEAI + H FY+
Sbjct: 134 IERRKKFNLKPMSIEEAILQMNLTDHDFYM 163
[32][TOP]
>UniRef100_Q31KN7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Synechococcus elongatus PCC 7942 RepID=Q31KN7_SYNE7
Length = 207
Score = 53.1 bits (126), Expect(2) = 4e-09
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKE--QKVEVTIYTLRNG-VVRVEDAENNLYAAID 173
+++ L E+DV LS H K Q EVTIY NG V+R E+ NLYA+ID
Sbjct: 29 SHYQSFLTEIDVHLSV-----AKHAKSNPRQTAEVTIYA--NGTVIRAEECNENLYASID 81
Query: 174 LVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 278
LV DKI +L+K KEK R G+ E D+
Sbjct: 82 LVSDKITRQLKKYKEKLRDR---KGQLSTAETADQ 113
Score = 31.2 bits (69), Expect(2) = 4e-09
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
P +++R+K + +TVE+A+ L+ V H FY+
Sbjct: 132 PQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYM 164
[33][TOP]
>UniRef100_Q5N179 Light repressed protein A homolog n=1 Tax=Synechococcus elongatus
PCC 6301 RepID=Q5N179_SYNP6
Length = 207
Score = 51.6 bits (122), Expect(2) = 1e-08
Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKE--QKVEVTIYTLRNG-VVRVEDAENNLYAAID 173
+++ L E+DV LS H K Q EVTIY NG V+R E+ NLYA+ID
Sbjct: 29 SHYQSFLTEIDVHLSV-----AKHAKSNPRQTAEVTIYA--NGTVIRAEECNENLYASID 81
Query: 174 LVCDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDE 278
LV DKI +L+K KE+ R G+ E D+
Sbjct: 82 LVSDKITRQLKKYKEELRDR---KGQLSTAETADQ 113
Score = 31.2 bits (69), Expect(2) = 1e-08
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 382 PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
P +++R+K + +TVE+A+ L+ V H FY+
Sbjct: 132 PQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYM 164
[34][TOP]
>UniRef100_C2D8Z3 Possible ribosome-associated inhibitor A n=1 Tax=Atopobium vaginae
DSM 15829 RepID=C2D8Z3_9ACTN
Length = 192
Score = 50.4 bits (119), Expect(2) = 2e-08
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +3
Query: 72 HGKKEQKV-EVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPG 248
H ++K EVT+Y +RN VVRVE + ++YAAID DK+ +L+K K + I R
Sbjct: 49 HSNPDRKTCEVTVY-VRNNVVRVEASSEDMYAAIDAASDKVTRQLRKYKTRIIDR---KQ 104
Query: 249 RAGPKEDVDEEDFQEYLKEVKMDTQLV 329
R+ +D + + EV D LV
Sbjct: 105 RSQAPAPAPSKDLSDLIDEVADDDMLV 131
Score = 31.6 bits (70), Expect(2) = 2e-08
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
++R K + L P+T EEA+ + +GH FYV
Sbjct: 130 LVREKYIDLHPMTEEEALVQTDLIGHDFYV 159
[35][TOP]
>UniRef100_A5GUZ2 Light repressed protein A homolog n=1 Tax=Synechococcus sp. RCC307
RepID=A5GUZ2_SYNR3
Length = 187
Score = 41.2 bits (95), Expect(2) = 2e-08
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
++F+ ++E DV LS +Q EVT++ V+R ++ NLYA+IDLV
Sbjct: 29 SHFNGMVQEADVHLSVARNPR----VPQQTAEVTLFA-SGTVIRAQERSQNLYASIDLVA 83
Query: 183 DKIRAKLQKIKEKAISRG 236
K+ +LQ+ K++ G
Sbjct: 84 GKLARQLQRHKDRRQGHG 101
Score = 40.4 bits (93), Expect(2) = 2e-08
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1
Query: 340 EQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
+ LQ + AEL PA V+R K + P++VEEAI LE + H FYV
Sbjct: 118 DMLQGRHAEL----PAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYV 160
[36][TOP]
>UniRef100_A9KS11 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium phytofermentans ISDg RepID=A9KS11_CLOPH
Length = 178
Score = 48.5 bits (114), Expect(2) = 7e-08
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = +3
Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
E+ VTLS K QK+EVTI ++ +VR E N++YA+IDLV + I +L+
Sbjct: 36 EIHVTLSVE--------KDRQKIEVTI-PMKGNIVRAEQVSNDMYASIDLVEEVIERQLK 86
Query: 207 KIKEKAISRGAWPGRAGP-------KEDVDEED 284
K K K P ED DEED
Sbjct: 87 KYKSKLKDMNQSAANFNPSFFEDVLNEDSDEED 119
Score = 31.6 bits (70), Expect(2) = 7e-08
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 388 NVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
N+ R K + P+ EEA +E +GH+FYV
Sbjct: 121 NITRVKRFAMKPMDAEEACVQMELLGHNFYV 151
[37][TOP]
>UniRef100_B0A7Y1 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0A7Y1_9CLOT
Length = 187
Score = 60.1 bits (144), Expect = 8e-08
Identities = 32/71 (45%), Positives = 45/71 (63%)
Frame = +3
Query: 9 FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188
+ H EV VT+SAR K +QK+EVTI + ++R ED+E NLYAAID+V DK
Sbjct: 36 YLHEDTEVKVTVSAR--------KAKQKIEVTIIPINGPIIRAEDSEENLYAAIDVVYDK 87
Query: 189 IRAKLQKIKEK 221
+ +L++ K K
Sbjct: 88 LNKQLRRYKNK 98
[38][TOP]
>UniRef100_B1I6C1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Candidatus Desulforudis audaxviator MP104C
RepID=B1I6C1_DESAP
Length = 174
Score = 47.8 bits (112), Expect(2) = 1e-07
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVC 182
+ F H V V LS K +VEVT+ + ++R E+ ++YA+IDLV
Sbjct: 28 SKFEHHFGSVQVALSVE--------KDSHRVEVTV-PIDGMILRGEEVTGDMYASIDLVV 78
Query: 183 DKIRAKLQKIKEKAISRGAWPGRAG-PKEDVDEEDFQEY 296
+K+ +L++ K K ++R PG G +E +ED +EY
Sbjct: 79 EKLEKQLERYKGKLLNRR--PGAGGVTREQETQEDEEEY 115
Score = 31.6 bits (70), Expect(2) = 1e-07
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
++R+K L P+ V+EA+ + +GHSF+V
Sbjct: 117 IVRTKRFALKPMPVDEAVMQMNLLGHSFFV 146
[39][TOP]
>UniRef100_UPI00017F60C6 putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F60C6
Length = 185
Score = 58.5 bits (140), Expect = 2e-07
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +3
Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
EV VT+SA+ K QKVEVTI + ++R ED E++LYAAID+VCDK+ ++
Sbjct: 36 EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87
Query: 207 KIKEK 221
K K K
Sbjct: 88 KYKTK 92
[40][TOP]
>UniRef100_UPI00017F5ACC putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
ATCC 43255 RepID=UPI00017F5ACC
Length = 185
Score = 58.5 bits (140), Expect = 2e-07
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +3
Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
EV VT+SA+ K QKVEVTI + ++R ED E++LYAAID+VCDK+ ++
Sbjct: 36 EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87
Query: 207 KIKEK 221
K K K
Sbjct: 88 KYKTK 92
[41][TOP]
>UniRef100_C9XLM7 Putative sigma 54 modulation protein n=3 Tax=Clostridium difficile
RepID=C9XLM7_CLODI
Length = 187
Score = 58.5 bits (140), Expect = 2e-07
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +3
Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
EV VT+SA+ K QKVEVTI + ++R ED E++LYAAID+VCDK+ ++
Sbjct: 36 EVKVTVSAK--------KDRQKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVV 87
Query: 207 KIKEK 221
K K K
Sbjct: 88 KYKTK 92
[42][TOP]
>UniRef100_Q8DKM6 LrtA protein n=1 Tax=Thermosynechococcus elongatus BP-1
RepID=Q8DKM6_THEEB
Length = 209
Score = 58.2 bits (139), Expect = 3e-07
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLS-ARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLV 179
++F + + EVDV LS AR T +Q EVT++ + V+R E++ NLYA+IDLV
Sbjct: 29 SHFQNVINEVDVHLSVARNRSTAP----KQTAEVTVF-VNGSVIRAEESSENLYASIDLV 83
Query: 180 CDKIRAKLQKIKEK 221
DKI KL+K+KEK
Sbjct: 84 ADKIARKLRKLKEK 97
[43][TOP]
>UniRef100_Q00W70 Chloroplast-specific ribosomal protein (ISS) n=1 Tax=Ostreococcus
tauri RepID=Q00W70_OSTTA
Length = 184
Score = 58.2 bits (139), Expect = 3e-07
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Frame = +3
Query: 12 SHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKI 191
S ++EVDV SARGG+ G+ G E K EVT+ R + + NLYA ID D +
Sbjct: 82 SRDIREVDVRCSARGGE-GSKGGVEHKTEVTVLMTRGPTLHADGVGENLYATIDQCADIV 140
Query: 192 RAKLQKIKEKAISRGAWPGR--AGPK------EDVDEED 284
++K KEK +GA A PK EDVD +D
Sbjct: 141 TRSIRKHKEKHGGKGARHAAHDASPKEALLDAEDVDGDD 179
[44][TOP]
>UniRef100_C9BUA9 Sigma 54 modulation protein/ribosomal protein S30EA n=3
Tax=Enterococcus faecium RepID=C9BUA9_ENTFC
Length = 183
Score = 40.4 bits (93), Expect(2) = 7e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +3
Query: 78 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
+K KVEVTI L V+R E+ +LYA+IDLV DK+ +++K K K
Sbjct: 49 EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95
Score = 36.2 bits (82), Expect(2) = 7e-07
Identities = 20/72 (27%), Positives = 42/72 (58%)
Frame = +1
Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444
+T + R SR T + +LF++E++ + +EL+ ++R+K + L P+ EEA+
Sbjct: 93 KTKINRKSRETGMNTADATALFNEEDENEND-SELD------IVRTKRLSLKPMDSEEAV 145
Query: 445 DALEAVGHSFYV 480
+ +GH+F++
Sbjct: 146 LQMNMLGHNFFI 157
[45][TOP]
>UniRef100_C9BP47 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Enterococcus faecium RepID=C9BP47_ENTFC
Length = 183
Score = 40.4 bits (93), Expect(2) = 7e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +3
Query: 78 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
+K KVEVTI L V+R E+ +LYA+IDLV DK+ +++K K K
Sbjct: 49 EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95
Score = 36.2 bits (82), Expect(2) = 7e-07
Identities = 20/72 (27%), Positives = 42/72 (58%)
Frame = +1
Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444
+T + R SR T + +LF++E++ + +EL+ ++R+K + L P+ EEA+
Sbjct: 93 KTKINRKSRETGMNTADAAALFNEEDENEND-SELD------IVRTKRLSLKPMDSEEAV 145
Query: 445 DALEAVGHSFYV 480
+ +GH+F++
Sbjct: 146 LQMNMLGHNFFI 157
[46][TOP]
>UniRef100_C9B3Z6 Sigma 54 modulation protein/ribosomal protein S30EA n=3
Tax=Enterococcus faecium RepID=C9B3Z6_ENTFC
Length = 183
Score = 40.4 bits (93), Expect(2) = 7e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +3
Query: 78 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
+K KVEVTI L V+R E+ +LYA+IDLV DK+ +++K K K
Sbjct: 49 EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95
Score = 36.2 bits (82), Expect(2) = 7e-07
Identities = 20/72 (27%), Positives = 42/72 (58%)
Frame = +1
Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444
+T + R SR T + +LF++E++ + +EL+ ++R+K + L P+ EEA+
Sbjct: 93 KTKINRKSRETGMNTANAAALFNEEDENEND-SELD------IVRTKRLSLKPMDSEEAV 145
Query: 445 DALEAVGHSFYV 480
+ +GH+F++
Sbjct: 146 LQMNMLGHNFFI 157
[47][TOP]
>UniRef100_B9NF07 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NF07_POPTR
Length = 127
Score = 56.6 bits (135), Expect = 8e-07
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = +3
Query: 9 FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188
FSH ++EVD LS RGG+ G + I R+GVVR E+ +YA IDLV
Sbjct: 22 FSHLVREVDARLSVRGGELGKGPR--------IRKCRHGVVRAEEDSETIYATIDLVLSI 73
Query: 189 IRAKLQKIKEKA 224
I++KL+K+KE++
Sbjct: 74 IQSKLRKMKEES 85
[48][TOP]
>UniRef100_C2HCP0 Ribosome-associated inhibitor protein Y n=4 Tax=Enterococcus
faecium RepID=C2HCP0_ENTFC
Length = 183
Score = 40.4 bits (93), Expect(2) = 2e-06
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +3
Query: 78 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
+K KVEVTI L V+R E+ +LYA+IDLV DK+ +++K K K
Sbjct: 49 EKTAKVEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK 95
Score = 35.0 bits (79), Expect(2) = 2e-06
Identities = 21/72 (29%), Positives = 40/72 (55%)
Frame = +1
Query: 265 RTWMRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAI 444
+T + R SR T + LF+ EE+ + +EL+ ++R+K + L P+ EEA+
Sbjct: 93 KTKINRKSRETGMNTADAAVLFNGEEENEND-SELD------IVRTKRLSLKPMDSEEAV 145
Query: 445 DALEAVGHSFYV 480
+ +GH+F++
Sbjct: 146 LQMNMLGHNFFI 157
[49][TOP]
>UniRef100_B5YF17 Ribosomal subunit interface protein n=1 Tax=Dictyoglomus
thermophilum H-6-12 RepID=B5YF17_DICT6
Length = 179
Score = 43.1 bits (100), Expect(2) = 3e-06
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +3
Query: 3 ANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLV 179
+ F ++ ++V S + G K +VEVTI NG +++ +A + +IDLV
Sbjct: 28 SRFFDNIENIEVLFSE---EDWKDGSKRHRVEVTIKA--NGRIIKASEANQDFRTSIDLV 82
Query: 180 CDKIRAKLQKIKEKAISRG 236
DK+ +L+++KEK + +G
Sbjct: 83 VDKLETQLKRLKEKLVDKG 101
Score = 31.6 bits (70), Expect(2) = 3e-06
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 334 KEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
+ E ++ AE V++ K +L P+ VEEAI +E +GH F++
Sbjct: 103 RAESIREILAEKEVEEKPQVVKVKRFLLKPMDVEEAILQMELLGHDFFI 151
[50][TOP]
>UniRef100_B7CAG7 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
3989 RepID=B7CAG7_9FIRM
Length = 177
Score = 40.8 bits (94), Expect(2) = 3e-06
Identities = 20/46 (43%), Positives = 33/46 (71%)
Frame = +3
Query: 84 EQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
+QK+EVTI T R ++R E +++LYAAIDL DK+ ++++ K +
Sbjct: 49 KQKIEVTIPT-RYAILRAEVVDDDLYAAIDLAVDKLEDQIRRTKTR 93
Score = 33.5 bits (75), Expect(2) = 3e-06
Identities = 18/69 (26%), Positives = 39/69 (56%)
Frame = +1
Query: 274 MRRTSRSTSRRSRWTLSLFDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDAL 453
+RRT +R+++ +L+ E L + + V+R+K++V ++++EAI +
Sbjct: 87 IRRTKTRLTRKNKESLA----EAFLDHELFNDEEVDDDEVVRTKSIVPKEMSLDEAIMKM 142
Query: 454 EAVGHSFYV 480
E +GH F++
Sbjct: 143 ELLGHDFFI 151
[51][TOP]
>UniRef100_C1CWW9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Deinococcus deserti VCD115 RepID=C1CWW9_DEIDV
Length = 188
Score = 41.6 bits (96), Expect(2) = 6e-06
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Frame = +3
Query: 9 FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188
++ + + VTL+ R D G++ +VEV + + NG++R E+ +++YAAID D
Sbjct: 31 YNDQITDARVTLTVR--DVRDAGRRN-RVEVQL-NVPNGIIRAEEHHSDMYAAIDKASDV 86
Query: 189 IRAKLQKIKEKAISRG----AWPGRAGPKEDVDE--EDFQEYLKEV 308
+ +L+K K + + + PG + DV+ +D E++ E+
Sbjct: 87 LERQLRKFKTRYMKQRHETVPQPGPGPAEADVNAGLDDVSEFMPEI 132
Score = 32.0 bits (71), Expect(2) = 6e-06
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
++R K + P++ E+A+ +EA+GH FYV
Sbjct: 132 IVRQKRFDMRPMSPEDAVTQMEALGHDFYV 161
[52][TOP]
>UniRef100_B7KLI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7424 RepID=B7KLI5_CYAP7
Length = 199
Score = 53.5 bits (127), Expect = 7e-06
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +3
Query: 6 NFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNG-VVRVEDAENNLYAAIDLVC 182
+F +VDV LS + + K EVT+Y NG V+R ++ NLYA+IDLV
Sbjct: 30 HFQTLTTKVDVHLSVA---KNARIQNKHKAEVTVYA--NGTVIRAQEGSENLYASIDLVS 84
Query: 183 DKIRAKLQKIKEKAISRGAW-PGRAGPKEDVDEEDFQEYL 299
DKI +L+K KE+ + + A P +AG E V +E +E L
Sbjct: 85 DKIARQLRKYKERKLEQNAHSPVKAG--EVVQQETIEENL 122
[53][TOP]
>UniRef100_Q1IYK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Deinococcus geothermalis DSM 11300
RepID=Q1IYK5_DEIGD
Length = 186
Score = 40.0 bits (92), Expect(2) = 7e-06
Identities = 30/107 (28%), Positives = 53/107 (49%)
Frame = +3
Query: 9 FSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDK 188
FS + + V L+ R D G++ +VEV + + NG++R E+ ++YAAID D
Sbjct: 31 FSDQITDARVVLTVR--DVRDAGRRN-RVEVQL-NVPNGIIRAEEHHADMYAAIDRASDV 86
Query: 189 IRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLV 329
+ +L+K K K + R P+ + E D L + + ++V
Sbjct: 87 LERQLRKFKTKYL-RHRQEAAPPPQPGLAEADVNAGLDDTEFRPEIV 132
Score = 33.1 bits (74), Expect(2) = 7e-06
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 391 VMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
++R+K L P++ E+A+ +EA+GH FYV
Sbjct: 131 IVRTKRFDLRPMSPEDAVTQMEALGHDFYV 160
[54][TOP]
>UniRef100_C0Z6T8 Putative uncharacterized protein yvyD n=1 Tax=Brevibacillus brevis
NBRC 100599 RepID=C0Z6T8_BREBN
Length = 185
Score = 43.1 bits (100), Expect(2) = 8e-06
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Frame = +3
Query: 27 EVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQ 206
EV VT+ G+ GT +EVTI L ++R E+ ++YAAIDLV +K+ +++
Sbjct: 38 EVQVTMHVHRGE-GT-------IEVTI-PLSGVIIRAEETHEDMYAAIDLVVEKLERQIR 88
Query: 207 KIKEKAIS--RGAWPGRAGPKE---------DVDEED 284
K K K + R GR +E DVDEED
Sbjct: 89 KHKTKLMRKLRVDSTGRIAQRESQPVAVMIPDVDEED 125
Score = 30.0 bits (66), Expect(2) = 8e-06
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +1
Query: 388 NVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
+++R+K L P+ +EA+ ++ +GHSF+V
Sbjct: 129 DIVRTKRFDLKPMDAQEAVMQMDMLGHSFFV 159
[55][TOP]
>UniRef100_Q03GZ9 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Pediococcus pentosaceus ATCC 25745
RepID=Q03GZ9_PEDPA
Length = 184
Score = 42.0 bits (97), Expect(2) = 1e-05
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +3
Query: 81 KEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEKAISRGAWPGRAG- 257
K KVEVTI L V+R E+ +LYA++DLV DK+ +L+K K K + G G
Sbjct: 50 KTAKVEVTI-PLPYLVLRAEETSPDLYASVDLVTDKLERQLRKYKTKINRKSRETGYKGV 108
Query: 258 --PKEDVDEED 284
P D+ E +
Sbjct: 109 EIPSGDIVENE 119
Score = 30.8 bits (68), Expect(2) = 1e-05
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +1
Query: 388 NVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
+++R+K V L P+ EEAI ++ +GH+F++
Sbjct: 126 DIVRTKQVSLKPMGSEEAILQMDMLGHNFFI 156
[56][TOP]
>UniRef100_Q5M196 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=2 Tax=Streptococcus thermophilus RepID=Q5M196_STRT1
Length = 182
Score = 38.1 bits (87), Expect(2) = 1e-05
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +3
Query: 78 KKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQKIKEK 221
+K KVEVTI T + +R ED ++Y +IDLV DKI +++K K K
Sbjct: 49 EKTAKVEVTIPT-GSVTLRAEDVSLDMYGSIDLVVDKIARQIRKNKTK 95
Score = 34.7 bits (78), Expect(2) = 1e-05
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 328 FDKEEQLQRQFAELNRI*PANVMRSKTVVLDPITVEEAIDALEAVGHSFYV 480
F+KEE + E V+R+K + L P+ VEEAI +E +GH F++
Sbjct: 114 FNKEEVEEAPAVE--------VVRTKNIELKPMDVEEAILQMELLGHDFFI 156