AV645244 ( HCL100b07_r )

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[1][TOP]
>UniRef100_A8I003 Ycf32-related subunit of photosystem II n=1 Tax=Chlamydomonas
           reinhardtii RepID=A8I003_CHLRE
          Length = 260

 Score =  253 bits (646), Expect = 5e-66
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 61  MAALRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGTVATLSSVAA 240
           MAALRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGTVATLSSVAA
Sbjct: 1   MAALRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGTVATLSSVAA 60

Query: 241 SWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNKRA 420
           SWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNKRA
Sbjct: 61  SWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNKRA 120

Query: 421 VPAAVGMGAAASLLFA 468
           VPAAVGMGAAASLLFA
Sbjct: 121 VPAAVGMGAAASLLFA 136

 Score =  129 bits (324), Expect = 1e-28
 Identities = 66/78 (84%), Positives = 73/78 (93%)
 Frame = +1

Query: 235 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 414
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQLNQMDAKNK
Sbjct: 130 AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVMGWVGFNIFGSLQAQLNQMDAKNK 189

Query: 415 RAVPAAVGMGAAASLLFA 468
           RAVPAAVGMGAAASLLFA
Sbjct: 190 RAVPAAVGMGAAASLLFA 207

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 47/60 (78%), Positives = 55/60 (91%)
 Frame = +1

Query: 235 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 414
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQL+QMDAKNK
Sbjct: 201 AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLSQMDAKNK 260

[2][TOP]
>UniRef100_A8JKA1 Ycf32-related polyprotein of photosystem II (Fragment) n=1
           Tax=Chlamydomonas reinhardtii RepID=A8JKA1_CHLRE
          Length = 354

 Score =  168 bits (425), Expect = 2e-40
 Identities = 88/88 (100%), Positives = 88/88 (100%)
 Frame = +1

Query: 205 VGTVATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQA 384
           VGTVATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQA
Sbjct: 1   VGTVATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQA 60

Query: 385 QLNQMDAKNKRAVPAAVGMGAAASLLFA 468
           QLNQMDAKNKRAVPAAVGMGAAASLLFA
Sbjct: 61  QLNQMDAKNKRAVPAAVGMGAAASLLFA 88

 Score =  129 bits (324), Expect = 1e-28
 Identities = 66/78 (84%), Positives = 73/78 (93%)
 Frame = +1

Query: 235 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 414
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQLNQMDAKNK
Sbjct: 82  AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLNQMDAKNK 141

Query: 415 RAVPAAVGMGAAASLLFA 468
           RAVPAAVGMGAAASLLFA
Sbjct: 142 RAVPAAVGMGAAASLLFA 159

 Score =  129 bits (324), Expect = 1e-28
 Identities = 66/78 (84%), Positives = 73/78 (93%)
 Frame = +1

Query: 235 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 414
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQLNQMDAKNK
Sbjct: 153 AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLNQMDAKNK 212

Query: 415 RAVPAAVGMGAAASLLFA 468
           RAVPAAVGMGAAASLLFA
Sbjct: 213 RAVPAAVGMGAAASLLFA 230

 Score =  129 bits (324), Expect = 1e-28
 Identities = 66/78 (84%), Positives = 73/78 (93%)
 Frame = +1

Query: 235 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 414
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQLNQMDAKNK
Sbjct: 224 AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLNQMDAKNK 283

Query: 415 RAVPAAVGMGAAASLLFA 468
           RAVPAAVGMGAAASLLFA
Sbjct: 284 RAVPAAVGMGAAASLLFA 301

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 47/60 (78%), Positives = 54/60 (90%)
 Frame = +1

Query: 235 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 414
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQL QMDAKNK
Sbjct: 295 AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLRQMDAKNK 354

[3][TOP]
>UniRef100_C1MZ88 Photosystem II PsbY protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MZ88_9CHLO
          Length = 279

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
 Frame = +1

Query: 34  ALCLPRLVKMAALRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGT 213
           ++ +P L    + R+S     + R         LPVR A   V   A A  +    ++G 
Sbjct: 3   SIAMPVLSAAVSARVSVRAKVSTRGLRAVGVKPLPVRPAAVRVSASAAAESQTDDLQLGQ 62

Query: 214 VATLSSVAASWMMAGNAQAATE-LASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQL 390
            A L+   A  +    A AA+E L+ +A  D+RA I   +L P +GWV +NI      Q 
Sbjct: 63  TAALTLAGALALGTEQASAASESLSQVAGFDSRALIFLGILGPAIGWVLYNILTPGLNQF 122

Query: 391 NQMDAKN---KRAVPAAVGMGAAA 453
           N M  KN   K+ +P  +G+ AAA
Sbjct: 123 NSMQEKNARGKKGIPLGLGLSAAA 146

[4][TOP]
>UniRef100_A9U315 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp.
           patens RepID=A9U315_PHYPA
          Length = 137

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +1

Query: 205 VGTVATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQA 384
           V  V T  ++ A+   + +A A+ ++ +LA  DNR   L   L+P +GWV FNI   LQ 
Sbjct: 2   VNLVCTTGAMFAAMATSESAMASQQIMALAEGDNRVVALLIPLIPAIGWVLFNI---LQP 58

Query: 385 QLNQMD-AKNKRAVPAAVGMGAAASLLFA 468
            LNQ+D  +  +A+ A  G+GAAA+L+ A
Sbjct: 59  ALNQVDKMRGAKALVAGAGLGAAATLMAA 87

[5][TOP]
>UniRef100_C1E7Y4 Photosystem II PsbY protein n=1 Tax=Micromonas sp. RCC299
           RepID=C1E7Y4_9CHLO
          Length = 191

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 38/77 (49%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = +1

Query: 229 SVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQM--D 402
           S AA   M   A AATE   LA  D R  I     VPVLGWVG+NI G    QL +M  D
Sbjct: 56  SAAALMGMPEAADAATEAMQLADLDARIAIFGAF-VPVLGWVGYNILGPGLKQLEKMQQD 114

Query: 403 AKNKRAVPAAVGMGAAA 453
           A  K+ V A VG+ AAA
Sbjct: 115 AAKKKGVAAGVGLSAAA 131

[6][TOP]
>UniRef100_Q00Y99 Manganese-binding protein PsbY, photosystem II-associated-s (ISS)
           n=1 Tax=Ostreococcus tauri RepID=Q00Y99_OSTTA
          Length = 265

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 49/137 (35%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
 Frame = +1

Query: 55  VKMAALRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGTVATLSSV 234
           V + ALR S     A R   R AK     R A+ S V    A+ E             S+
Sbjct: 5   VNVPALRASRAAPLAKRE--RRAK-----RTAIASKVATKVATIESDEIVTRGQTAAMSL 57

Query: 235 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKN- 411
           AA+ + A  A AA E+  LA  D R  I   +  PVLGWV +NI G    Q   M  KN 
Sbjct: 58  AATMLFADQAHAAQEVGDLAGIDGRIAIFF-VFAPVLGWVAYNILGPGLRQFEDMQKKNA 116

Query: 412 -KRAVPAAVGMGAAASL 459
             + V A  G+ AAA L
Sbjct: 117 KSKGVLAGAGLSAAALL 133

[7][TOP]
>UniRef100_B6SUJ7 Photosystem II core complex proteins psbY n=1 Tax=Zea mays
           RepID=B6SUJ7_MAIZE
          Length = 196

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
 Frame = +1

Query: 52  LVKMAALRMSAPTSAALRSSVRSAKPVLPVRRAVRS--VVVRAQASEEQLGFKVGTVATL 225
           +  +A + +  P     RS+  S    + +R   R+    V A  S    G     +A+ 
Sbjct: 1   MATIATMALLKPARIVARSAPPSTSGSVSLRVPARAKKAAVSASVSSALAGAFFSALASS 60

Query: 226 SSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDA 405
            +  A+  +A  A AA      A SDNR  +L  ++ P +GWV +NI   LQ  LNQ++ 
Sbjct: 61  DAALAAQRVADVAAAAD-----AGSDNRGQLLLFVVAPAIGWVLYNI---LQPALNQLNR 112

Query: 406 KNKRAVPAAVGMGAAAS 456
              +AV A +G+GAAA+
Sbjct: 113 MRSQAVVAGLGLGAAAA 129

[8][TOP]
>UniRef100_A9SPH7 PsbY photosystem II polypeptide n=1 Tax=Physcomitrella patens
           subsp. patens RepID=A9SPH7_PHYPA
          Length = 368

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
 Frame = +1

Query: 202 KVGTVATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQ 381
           K G +  L    AS  +A +A AA E+A+LA SD+R  I+  LL+P +GWV FNI     
Sbjct: 205 KRGVIGALGLGTASLFLAPHADAAQEIATLADSDSRGLIIIGLLLPAVGWVLFNILKPAL 264

Query: 382 AQLNQMDAKNKRAVP-----------AAVGMGAAASLLFA 468
            Q+N +   N    P            A G+ AAA  L A
Sbjct: 265 NQINNIVEGNDTGAPVKRGKKFGGMIGATGISAAAMSLLA 304

[9][TOP]
>UniRef100_A4S5C8 Possible psbY, PSII-Y, photosystem II polypeptide n=1
           Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S5C8_OSTLU
          Length = 416

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 45/136 (33%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
 Frame = +1

Query: 70  LRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGTVATLSSVAASWM 249
           + + A   A  R + R+A+    + RA  S VV  + + +    + G  A +++ AAS  
Sbjct: 9   ITLPARAPARARRTARTAQSARVIARARTSAVVEDEFATDDDVVRRGQTAAMAT-AASMF 67

Query: 250 MAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKN-----K 414
            A  A AA EL   A  D R  I   +  PVLGWV +NI      QL  M A N     K
Sbjct: 68  FADRADAAQELMQTAL-DGRPLIFLAVFGPVLGWVAYNILSPGLRQLENMQAVNAKSSKK 126

Query: 415 RAVPAAVGMGAAASLL 462
           RA  A  G   A++L+
Sbjct: 127 RAAGALAGGLTASALM 142

[10][TOP]
>UniRef100_B6SQV2 Photosystem II core complex proteins psbY n=1 Tax=Zea mays
           RepID=B6SQV2_MAIZE
          Length = 191

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
 Frame = +1

Query: 52  LVKMAALRMSAPTSAALRSSVRSAKPVLPVR--RAVRSVVVRAQASEEQLGFKVGTVATL 225
           +  MA L+ +A  +A    S  S    L VR  +A +   +   AS    G      A L
Sbjct: 4   IATMALLKPAAKAAARSAPSTSSGSVSLRVRTGQAAKKAALSVSASSTLAG------AFL 57

Query: 226 SSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDA 405
           +++A+S     +A  A   A+ A  D+R  +L  ++ P +GWV +NI      QLN+M  
Sbjct: 58  AALASS----PDAALADVAAADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRM-- 111

Query: 406 KNKRAVPAAVGMGAAAS 456
           ++ +AV A +G+GAAA+
Sbjct: 112 RSSQAVAAGLGLGAAAA 128