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[1][TOP]
>UniRef100_Q5QEB2 Elongation factor Ts n=1 Tax=Chlamydomonas reinhardtii
RepID=Q5QEB2_CHLRE
Length = 1013
Score = 94.7 bits (234), Expect(2) = 1e-34
Identities = 56/91 (61%), Positives = 63/91 (69%), Gaps = 2/91 (2%)
Frame = +2
Query: 29 VKAHGRSVLRPVRGAWLAGARWRSPVSGLRSVCSL--RRPLPSRPPRLLSWRT*SEGSEY 202
VKAHGRSVLRPVRG AG R + +G+R + P + + + EGSEY
Sbjct: 11 VKAHGRSVLRPVRGP--AGRR-QVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEY 67
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
EGTVTTVEEFGAFVNFGANTNGLVHISKLAS
Sbjct: 68 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 98
Score = 75.9 bits (185), Expect(2) = 1e-34
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA
Sbjct: 99 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 137
[2][TOP]
>UniRef100_A8J637 Elongation factor Ts n=1 Tax=Chlamydomonas reinhardtii
RepID=A8J637_CHLRE
Length = 1013
Score = 94.7 bits (234), Expect(2) = 1e-34
Identities = 56/91 (61%), Positives = 63/91 (69%), Gaps = 2/91 (2%)
Frame = +2
Query: 29 VKAHGRSVLRPVRGAWLAGARWRSPVSGLRSVCSL--RRPLPSRPPRLLSWRT*SEGSEY 202
VKAHGRSVLRPVRG AG R + +G+R + P + + + EGSEY
Sbjct: 11 VKAHGRSVLRPVRGP--AGRR-QVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEY 67
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
EGTVTTVEEFGAFVNFGANTNGLVHISKLAS
Sbjct: 68 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 98
Score = 75.9 bits (185), Expect(2) = 1e-34
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA
Sbjct: 99 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 137
[3][TOP]
>UniRef100_Q5QEB0 Chloroplast polyprotein of elongation factor Ts n=1
Tax=Chlamydomonas reinhardtii RepID=Q5QEB0_CHLRE
Length = 603
Score = 94.7 bits (234), Expect(2) = 1e-34
Identities = 56/91 (61%), Positives = 63/91 (69%), Gaps = 2/91 (2%)
Frame = +2
Query: 29 VKAHGRSVLRPVRGAWLAGARWRSPVSGLRSVCSL--RRPLPSRPPRLLSWRT*SEGSEY 202
VKAHGRSVLRPVRG AG R + +G+R + P + + + EGSEY
Sbjct: 11 VKAHGRSVLRPVRGP--AGRR-QVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEY 67
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
EGTVTTVEEFGAFVNFGANTNGLVHISKLAS
Sbjct: 68 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 98
Score = 75.9 bits (185), Expect(2) = 1e-34
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA
Sbjct: 99 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 137
[4][TOP]
>UniRef100_A8J639 Polyprotein of PSRP-7 and EF-Ts, splice variant 2 n=1
Tax=Chlamydomonas reinhardtii RepID=A8J639_CHLRE
Length = 603
Score = 94.7 bits (234), Expect(2) = 1e-34
Identities = 56/91 (61%), Positives = 63/91 (69%), Gaps = 2/91 (2%)
Frame = +2
Query: 29 VKAHGRSVLRPVRGAWLAGARWRSPVSGLRSVCSL--RRPLPSRPPRLLSWRT*SEGSEY 202
VKAHGRSVLRPVRG AG R + +G+R + P + + + EGSEY
Sbjct: 11 VKAHGRSVLRPVRGP--AGRR-QVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEY 67
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
EGTVTTVEEFGAFVNFGANTNGLVHISKLAS
Sbjct: 68 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 98
Score = 75.9 bits (185), Expect(2) = 1e-34
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA
Sbjct: 99 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 137
[5][TOP]
>UniRef100_Q5QEB1 Plastid-specific ribosomal protein-7 n=1 Tax=Chlamydomonas
reinhardtii RepID=Q5QEB1_CHLRE
Length = 560
Score = 94.7 bits (234), Expect(2) = 1e-34
Identities = 56/91 (61%), Positives = 63/91 (69%), Gaps = 2/91 (2%)
Frame = +2
Query: 29 VKAHGRSVLRPVRGAWLAGARWRSPVSGLRSVCSL--RRPLPSRPPRLLSWRT*SEGSEY 202
VKAHGRSVLRPVRG AG R + +G+R + P + + + EGSEY
Sbjct: 11 VKAHGRSVLRPVRGP--AGRR-QVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEY 67
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
EGTVTTVEEFGAFVNFGANTNGLVHISKLAS
Sbjct: 68 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 98
Score = 75.9 bits (185), Expect(2) = 1e-34
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA
Sbjct: 99 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 137
[6][TOP]
>UniRef100_A8J641 Plastid-specific ribosomal protein 7 n=1 Tax=Chlamydomonas
reinhardtii RepID=A8J641_CHLRE
Length = 560
Score = 94.7 bits (234), Expect(2) = 1e-34
Identities = 56/91 (61%), Positives = 63/91 (69%), Gaps = 2/91 (2%)
Frame = +2
Query: 29 VKAHGRSVLRPVRGAWLAGARWRSPVSGLRSVCSL--RRPLPSRPPRLLSWRT*SEGSEY 202
VKAHGRSVLRPVRG AG R + +G+R + P + + + EGSEY
Sbjct: 11 VKAHGRSVLRPVRGP--AGRR-QVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEY 67
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
EGTVTTVEEFGAFVNFGANTNGLVHISKLAS
Sbjct: 68 EGTVTTVEEFGAFVNFGANTNGLVHISKLAS 98
Score = 75.9 bits (185), Expect(2) = 1e-34
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA
Sbjct: 99 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 137
[7][TOP]
>UniRef100_Q2BJK7 Conserved protein with nucleic acid-binding protein-like domain
(Transcriptional accessory protein) n=1
Tax=Neptuniibacter caesariensis RepID=Q2BJK7_9GAMM
Length = 714
Score = 44.3 bits (103), Expect(2) = 2e-10
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGT++ V FGAFV+ G + +GLVHIS+LA++
Sbjct: 642 GMRLEGTISNVTNFGAFVDLGVHQDGLVHISQLANK 677
Score = 44.3 bits (103), Expect(2) = 2e-10
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F K+ DVV PGQ VTV+VL VD ++KR+SL +++A
Sbjct: 678 FVKDPHDVVSPGQIVTVRVLEVDEKRKRISLTMRTA 713
[8][TOP]
>UniRef100_Q1JW78 RNA binding S1 n=1 Tax=Desulfuromonas acetoxidans DSM 684
RepID=Q1JW78_DESAC
Length = 747
Score = 43.1 bits (100), Expect(2) = 1e-09
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G +G+VT V FGAFV+ G + +GLVHIS+LA R
Sbjct: 672 GMVLQGSVTNVAAFGAFVDIGVHQDGLVHISELADR 707
Score = 42.7 bits (99), Expect(2) = 1e-09
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
F KN ++V+ GQ V VKVLSVD +KR+SL +K A A
Sbjct: 708 FVKNPAEIVKVGQVVHVKVLSVDTTRKRISLSIKQAGA 745
[9][TOP]
>UniRef100_C6E3L9 RNA binding S1 domain protein n=1 Tax=Geobacter sp. M21
RepID=C6E3L9_GEOSM
Length = 756
Score = 43.5 bits (101), Expect(2) = 2e-09
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
FTK+ D V+ GQ V VKVLS D E+KR+SL +K A
Sbjct: 685 FTKDPNDAVKVGQIVKVKVLSADPERKRISLSIKQA 720
Score = 42.0 bits (97), Expect(2) = 2e-09
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG +G VT V FGAFV+ G + +GLVH+S+L R
Sbjct: 648 EGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLTHR 684
[10][TOP]
>UniRef100_C1N2E8 Elongation factor Ts n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N2E8_9CHLO
Length = 844
Score = 46.2 bits (108), Expect(2) = 2e-09
Identities = 19/33 (57%), Positives = 28/33 (84%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 289
G+E++G V V+E+G FV+FGA ++GLVHIS+L
Sbjct: 71 GAEFKGVVKRVQEYGCFVDFGAKSDGLVHISEL 103
Score = 38.9 bits (89), Expect(2) = 2e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
GF +N DVV Q+V V + S+DAEK R+SL +K
Sbjct: 106 GFVENVADVVSENQEVQVFIKSIDAEKGRISLTMK 140
[11][TOP]
>UniRef100_A1APM8 RNA binding S1 domain protein n=1 Tax=Pelobacter propionicus DSM
2379 RepID=A1APM8_PELPD
Length = 723
Score = 44.3 bits (103), Expect(2) = 2e-09
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG +G VT V FGAFV+ G + +GLVHIS LA+R
Sbjct: 648 EGMVLQGVVTNVTAFGAFVDIGVHQDGLVHISHLANR 684
Score = 40.8 bits (94), Expect(2) = 2e-09
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F K+ D VQ GQ V VKVLS D ++KR+SL ++ A
Sbjct: 685 FVKSPHDAVQAGQLVRVKVLSADPKRKRISLSIREA 720
[12][TOP]
>UniRef100_A1W6M2 RNA binding S1 domain protein n=1 Tax=Acidovorax sp. JS42
RepID=A1W6M2_ACISJ
Length = 798
Score = 45.4 bits (106), Expect(2) = 3e-09
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASRVHQE 310
EG EGTV+ V +FGAFV+ G + +GLVH+S+L+ + Q+
Sbjct: 678 EGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQD 718
Score = 39.3 bits (90), Expect(2) = 3e-09
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++A++VV+ G V VKVL VDA +KR+SL +K
Sbjct: 715 FVQDAREVVKTGDIVKVKVLEVDAARKRISLSMK 748
[13][TOP]
>UniRef100_Q6F7B6 Putative uncharacterized protein n=1 Tax=Acinetobacter sp. ADP1
RepID=Q6F7B6_ACIAD
Length = 796
Score = 46.6 bits (109), Expect(2) = 3e-09
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
+EG + EG VT V FGAFV+ G + +GLVHIS+LA+
Sbjct: 652 TEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELAN 688
Score = 38.1 bits (87), Expect(2) = 3e-09
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + VV+PGQ V V+V+ VDAE+KRV+L ++
Sbjct: 690 FVSDPHKVVKPGQIVQVRVIQVDAERKRVNLSMR 723
[14][TOP]
>UniRef100_A5G3R7 RNA binding S1 domain protein n=1 Tax=Geobacter uraniireducens Rf4
RepID=A5G3R7_GEOUR
Length = 757
Score = 45.1 bits (105), Expect(2) = 4e-09
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG +GTVT V FGAFV+ G + +GLVH+S LA R
Sbjct: 648 EGMILQGTVTNVTAFGAFVDIGVHQDGLVHVSHLAQR 684
Score = 39.3 bits (90), Expect(2) = 4e-09
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F K+ + V+ GQ V VKVLSVD ++KR++L +K A
Sbjct: 685 FVKDPNEAVKVGQIVKVKVLSVDLQRKRIALSIKEA 720
[15][TOP]
>UniRef100_Q2L128 Transcription accessory protein n=1 Tax=Bordetella avium 197N
RepID=Q2L128_BORA1
Length = 790
Score = 42.4 bits (98), Expect(2) = 4e-09
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+ GQ VTVKVL VD ++KRV+L ++
Sbjct: 706 FVKDPRDVVRVGQTVTVKVLEVDVQRKRVALTMR 739
Score = 42.0 bits (97), Expect(2) = 4e-09
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVHIS LA +
Sbjct: 670 GMLLEGVVTNVANFGAFVDIGVHQDGLVHISALAEK 705
[16][TOP]
>UniRef100_B7X315 RNA binding S1 domain protein n=1 Tax=Comamonas testosteroni KF-1
RepID=B7X315_COMTE
Length = 793
Score = 43.9 bits (102), Expect(2) = 5e-09
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG EGTV+ V +FGAFV+ G + +GLVH+S+++ +
Sbjct: 663 EGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHK 699
Score = 40.0 bits (92), Expect(2) = 5e-09
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++A++VV+ GQ V VKVL VD ++KR+SL +K
Sbjct: 700 FIEDAREVVKTGQIVKVKVLEVDVDRKRISLTMK 733
[17][TOP]
>UniRef100_Q7WGI8 Transcription accessory protein n=1 Tax=Bordetella bronchiseptica
RepID=Q7WGI8_BORBR
Length = 791
Score = 42.4 bits (98), Expect(2) = 6e-09
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVHIS LA +
Sbjct: 670 GMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEK 705
Score = 41.2 bits (95), Expect(2) = 6e-09
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+ GQ VTVKVL VD +KRV+L ++
Sbjct: 706 FVKDPRDVVRVGQTVTVKVLEVDVARKRVALTMR 739
[18][TOP]
>UniRef100_Q7W5T7 Transcription accessory protein n=1 Tax=Bordetella parapertussis
RepID=Q7W5T7_BORPA
Length = 791
Score = 42.4 bits (98), Expect(2) = 6e-09
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVHIS LA +
Sbjct: 670 GMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEK 705
Score = 41.2 bits (95), Expect(2) = 6e-09
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+ GQ VTVKVL VD +KRV+L ++
Sbjct: 706 FVKDPRDVVRVGQTVTVKVLEVDVARKRVALTMR 739
[19][TOP]
>UniRef100_A9IIW4 Transcription accessory protein n=1 Tax=Bordetella petrii DSM 12804
RepID=A9IIW4_BORPD
Length = 791
Score = 42.4 bits (98), Expect(2) = 6e-09
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVHIS LA +
Sbjct: 670 GMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEK 705
Score = 41.2 bits (95), Expect(2) = 6e-09
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+ GQ VTVKVL VD +KRV+L ++
Sbjct: 706 FVKDPRDVVRVGQTVTVKVLEVDVARKRVALTMR 739
[20][TOP]
>UniRef100_Q45388 Protein tex n=1 Tax=Bordetella pertussis RepID=TEX_BORPE
Length = 791
Score = 42.4 bits (98), Expect(2) = 6e-09
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVHIS LA +
Sbjct: 670 GMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEK 705
Score = 41.2 bits (95), Expect(2) = 6e-09
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+ GQ VTVKVL VD +KRV+L ++
Sbjct: 706 FVKDPRDVVRVGQTVTVKVLEVDVARKRVALTMR 739
[21][TOP]
>UniRef100_B5E861 RNA binding S1 domain protein n=1 Tax=Geobacter bemidjiensis Bem
RepID=B5E861_GEOBB
Length = 754
Score = 42.4 bits (98), Expect(2) = 6e-09
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG +G VT V FGAFV+ G + +GLVH+S+L+ R
Sbjct: 646 EGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHR 682
Score = 41.2 bits (95), Expect(2) = 6e-09
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
FTK+ D V+ G+ V VK+LS D E+KR+SL +K A
Sbjct: 683 FTKDPNDAVKVGEIVKVKLLSADPERKRISLSIKQA 718
[22][TOP]
>UniRef100_B9MA81 Resolvase RNase H domain protein n=1 Tax=Diaphorobacter sp. TPSY
RepID=B9MA81_DIAST
Length = 798
Score = 44.3 bits (103), Expect(2) = 8e-09
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG EGTV+ V +FGAFV+ G + +GLVH+S+L+ +
Sbjct: 678 EGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHK 714
Score = 38.9 bits (89), Expect(2) = 8e-09
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F +A++VV+ G V VKVL VDA +KR+SL +K
Sbjct: 715 FVNDAREVVKTGDIVKVKVLEVDAARKRISLSMK 748
[23][TOP]
>UniRef100_D0C0W2 Transcriptional accessory protein n=1 Tax=Acinetobacter sp. RUH2624
RepID=D0C0W2_9GAMM
Length = 795
Score = 46.6 bits (109), Expect(2) = 8e-09
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
+EG + EG VT V FGAFV+ G + +GLVHIS+LA+
Sbjct: 652 TEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELAN 688
Score = 36.6 bits (83), Expect(2) = 8e-09
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
F + VV+PGQ V V+V+ VDAE+ RV+L +++
Sbjct: 690 FVSDPHKVVKPGQIVQVRVMQVDAERNRVNLSMRA 724
[24][TOP]
>UniRef100_UPI0001BB916D conserved hypothetical protein n=1 Tax=Acinetobacter johnsonii
SH046 RepID=UPI0001BB916D
Length = 788
Score = 46.2 bits (108), Expect(2) = 8e-09
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
+EG + EG VT V FGAFV+ G + +GLVHIS+LA+
Sbjct: 645 TEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELAN 681
Score = 37.0 bits (84), Expect(2) = 8e-09
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + VV+PGQ V V+VL+VDAE+ RV+L ++
Sbjct: 683 FVADPHKVVKPGQIVQVRVLTVDAERNRVNLSMR 716
[25][TOP]
>UniRef100_B3E6B1 RNA binding S1 domain protein n=1 Tax=Geobacter lovleyi SZ
RepID=B3E6B1_GEOLS
Length = 762
Score = 43.5 bits (101), Expect(2) = 8e-09
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG +G VT V FGAFV+ G + +GLVH+S LA+R
Sbjct: 648 EGMILQGVVTNVTAFGAFVDIGVHQDGLVHVSHLANR 684
Score = 39.7 bits (91), Expect(2) = 8e-09
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F K+ D VQ GQ V VKVLS D ++KR++L +K +
Sbjct: 685 FIKDPNDAVQVGQVVKVKVLSADPQRKRIALSIKES 720
[26][TOP]
>UniRef100_B4VGY9 S1 RNA binding domain protein n=1 Tax=Microcoleus chthonoplastes
PCC 7420 RepID=B4VGY9_9CYAN
Length = 718
Score = 46.6 bits (109), Expect(2) = 8e-09
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G E EG VT V FGAFV+ G + +GLVHIS+LA R
Sbjct: 644 GMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADR 679
Score = 36.6 bits (83), Expect(2) = 8e-09
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F + K++V+ GQ V V+VLSVD + KR+ L +++A
Sbjct: 680 FVDDPKEIVKVGQVVNVRVLSVDEKLKRIGLSMRAA 715
[27][TOP]
>UniRef100_UPI0001BB9DBF transcriptional accessory protein n=1 Tax=Acinetobacter lwoffii
SH145 RepID=UPI0001BB9DBF
Length = 789
Score = 45.8 bits (107), Expect(2) = 1e-08
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
SEG + EG VT V FGAFV+ G + +GLVHIS+L +
Sbjct: 645 SEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELTN 681
Score = 37.0 bits (84), Expect(2) = 1e-08
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + VV+PGQ V V+VL+VDAE+ RV+L ++
Sbjct: 683 FVADPHKVVKPGQIVQVRVLNVDAERNRVNLSMR 716
[28][TOP]
>UniRef100_C5T4L5 RNA binding S1 domain protein n=1 Tax=Acidovorax delafieldii 2AN
RepID=C5T4L5_ACIDE
Length = 789
Score = 45.4 bits (106), Expect(2) = 1e-08
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG EGTV+ V +FGAFV+ G + +GLVH+S+LA +
Sbjct: 663 EGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHK 699
Score = 37.4 bits (85), Expect(2) = 1e-08
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F +A++VV+ G V VKV+ VD E+KR+ L +K
Sbjct: 700 FVNDAREVVKTGDIVKVKVMEVDVERKRIGLSMK 733
[29][TOP]
>UniRef100_A9BZV4 RNA binding S1 domain protein n=1 Tax=Delftia acidovorans SPH-1
RepID=A9BZV4_DELAS
Length = 786
Score = 43.9 bits (102), Expect(2) = 1e-08
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG EGTV+ V +FGAFV+ G + +GLVH+S+++ +
Sbjct: 663 EGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHK 699
Score = 38.9 bits (89), Expect(2) = 1e-08
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++A++VV+ GQ V VKVL VD +KR+SL +K
Sbjct: 700 FIEDAREVVKTGQIVKVKVLEVDVARKRISLTMK 733
[30][TOP]
>UniRef100_B9M315 RNA binding S1 domain protein n=1 Tax=Geobacter sp. FRC-32
RepID=B9M315_GEOSF
Length = 756
Score = 44.3 bits (103), Expect(2) = 1e-08
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASRVHQE 310
EG +GTVT V FGAFV+ G + +GLVH+S L+ R +E
Sbjct: 648 EGMILQGTVTNVAAFGAFVDIGVHQDGLVHVSHLSRRFVRE 688
Score = 38.5 bits (88), Expect(2) = 1e-08
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F + A + V+ G+ V VKVL+VD ++KR+SL +K A
Sbjct: 685 FVREASEAVKVGEIVKVKVLAVDLQRKRISLSIKEA 720
[31][TOP]
>UniRef100_A5ZAL1 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
ATCC 27560 RepID=A5ZAL1_9FIRM
Length = 711
Score = 45.4 bits (106), Expect(2) = 1e-08
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L + EG E +GTV V +FGAFV+ G + +GLVHIS+++++
Sbjct: 624 PKPVLKSDVLDFDDLKEGMELKGTVRNVIDFGAFVDIGVHQDGLVHISEMSNK 676
Score = 37.4 bits (85), Expect(2) = 1e-08
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ DVV G V V+VLSVD E+KR+ L +K
Sbjct: 677 FIKHPLDVVSVGDVVDVRVLSVDKERKRIQLSMK 710
[32][TOP]
>UniRef100_A4A335 S1 RNA binding domain protein n=1 Tax=Congregibacter litoralis KT71
RepID=A4A335_9GAMM
Length = 792
Score = 42.4 bits (98), Expect(2) = 1e-08
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EGTVT V FGAFV+ G + +GLVHIS +A +
Sbjct: 655 EGTVTNVTSFGAFVDVGVHQDGLVHISAMAEK 686
Score = 40.0 bits (92), Expect(2) = 1e-08
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DV + G VTVKV+S+D E+KRV L ++
Sbjct: 687 FVKDPRDVAKAGDIVTVKVMSIDVERKRVGLSMR 720
[33][TOP]
>UniRef100_C6RQH0 Transcriptional accessory protein n=2 Tax=Acinetobacter
radioresistens RepID=C6RQH0_ACIRA
Length = 785
Score = 46.6 bits (109), Expect(2) = 1e-08
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
+EG + EG VT V FGAFV+ G + +GLVHIS+LA+
Sbjct: 640 TEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELAN 676
Score = 35.8 bits (81), Expect(2) = 1e-08
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + +V+PGQ V V+V+ VDAE+ RV+L ++
Sbjct: 678 FVSDPHKIVKPGQIVQVRVIQVDAERNRVNLSMR 711
[34][TOP]
>UniRef100_Q3A645 Transcriptional accessory protein n=1 Tax=Pelobacter carbinolicus
DSM 2380 RepID=Q3A645_PELCD
Length = 759
Score = 43.9 bits (102), Expect(2) = 1e-08
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG GTVT V FGAFV+ G + +GLVH+S LA R
Sbjct: 648 EGMILSGTVTNVAAFGAFVDIGVHQDGLVHVSHLAHR 684
Score = 38.5 bits (88), Expect(2) = 1e-08
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F K+ +VV+ G V VKVLSVDA +KR+ L +K A
Sbjct: 685 FVKDPGEVVRVGDIVKVKVLSVDAARKRIGLSIKEA 720
[35][TOP]
>UniRef100_C0E9B9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum
DSM 5476 RepID=C0E9B9_9CLOT
Length = 717
Score = 45.8 bits (107), Expect(2) = 1e-08
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L + G E +GTV V +FGAFV+ G + +GLVH+S+LA+R
Sbjct: 624 PKPLLRSDVLELKDLKPGMELKGTVRNVIDFGAFVDIGVHEDGLVHVSQLANR 676
Score = 36.6 bits (83), Expect(2) = 1e-08
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ DVV+ G VTV VL VD ++KR+SL +K
Sbjct: 677 FVKHPLDVVKVGDVVTVWVLDVDLKRKRISLTMK 710
[36][TOP]
>UniRef100_B8FHU3 RNA binding S1 domain protein n=1 Tax=Desulfatibacillum
alkenivorans AK-01 RepID=B8FHU3_DESAA
Length = 752
Score = 41.6 bits (96), Expect(2) = 1e-08
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
GF KN DVV+ Q+V V+VL VD +KR+SL +K +
Sbjct: 675 GFVKNPADVVKVQQRVKVRVLEVDLPRKRISLSMKKKI 712
Score = 40.8 bits (94), Expect(2) = 1e-08
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G E G VT V FGAFV+ G + +GLVHIS+L+
Sbjct: 640 GMELPGIVTNVTNFGAFVDVGVHQDGLVHISQLS 673
[37][TOP]
>UniRef100_B8HDI0 RNA binding S1 domain protein n=1 Tax=Arthrobacter chlorophenolicus
A6 RepID=B8HDI0_ARTCA
Length = 830
Score = 44.7 bits (104), Expect(2) = 2e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S LA+R
Sbjct: 663 GMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSALANR 698
Score = 37.4 bits (85), Expect(2) = 2e-08
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + ++VV+ GQ V VKVL D E+KR+SL L+
Sbjct: 699 FVSDPREVVKSGQVVRVKVLEADPERKRISLTLR 732
[38][TOP]
>UniRef100_C7MX99 Transcriptional accessory protein n=1 Tax=Saccharomonospora viridis
DSM 43017 RepID=C7MX99_SACVD
Length = 775
Score = 41.2 bits (95), Expect(2) = 2e-08
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVH+S ++ R
Sbjct: 647 GMRLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHR 682
Score = 40.8 bits (94), Expect(2) = 2e-08
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
+ + +DVV+PG VTVKVL VD +KR+SL L+
Sbjct: 683 YVSDPRDVVKPGDVVTVKVLDVDVPRKRISLTLR 716
[39][TOP]
>UniRef100_A0JTC3 RNA binding S1 domain protein n=1 Tax=Arthrobacter sp. FB24
RepID=A0JTC3_ARTS2
Length = 861
Score = 44.3 bits (103), Expect(2) = 2e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S LA+R
Sbjct: 692 GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALANR 727
Score = 37.4 bits (85), Expect(2) = 2e-08
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + ++VV+ GQ V VKVL D E+KR+SL L+
Sbjct: 728 FVSDPREVVKSGQVVRVKVLEADPERKRISLTLR 761
[40][TOP]
>UniRef100_A1TSP0 RNA binding S1 domain protein n=1 Tax=Acidovorax citrulli AAC00-1
RepID=A1TSP0_ACIAC
Length = 788
Score = 45.4 bits (106), Expect(2) = 2e-08
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASRVHQE 310
EG EGTV+ V +FGAFV+ G + +GLVH+S+L+ + Q+
Sbjct: 663 EGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQD 703
Score = 36.2 bits (82), Expect(2) = 2e-08
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++A+++V+ G V VKVL VD +KR+SL +K
Sbjct: 700 FVQDAREIVKTGDIVKVKVLEVDPVRKRISLTMK 733
[41][TOP]
>UniRef100_C1F2W2 S1 RNA binding domain protein n=1 Tax=Acidobacterium capsulatum
ATCC 51196 RepID=C1F2W2_ACIC5
Length = 753
Score = 46.2 bits (108), Expect(2) = 2e-08
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASRVHQE 310
EG EG VT V +FGAFV+ G + +GLVHIS+L++R +E
Sbjct: 646 EGMVLEGVVTNVTKFGAFVDVGVHQDGLVHISELSNRFIKE 686
Score = 35.4 bits (80), Expect(2) = 2e-08
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
F K + V+ GQ V VKVLS DA+ KR++L +++
Sbjct: 683 FIKEPSEAVKAGQIVRVKVLSADAKTKRIALSMRA 717
[42][TOP]
>UniRef100_Q1ZC98 Putative uncharacterized protein n=1 Tax=Psychromonas sp. CNPT3
RepID=Q1ZC98_9GAMM
Length = 723
Score = 41.6 bits (96), Expect(2) = 2e-08
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +2
Query: 197 EYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
E +G +T V FGAFV+ G + +GL+H+S+LA++
Sbjct: 650 EIQGVITNVTSFGAFVDIGVHQDGLIHLSQLANK 683
Score = 40.0 bits (92), Expect(2) = 2e-08
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+ GQ V V+VLSVD+E+KR+SL L+
Sbjct: 684 FVKDPFEVVKTGQIVQVRVLSVDSERKRISLSLR 717
[43][TOP]
>UniRef100_B5D203 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM
17135 RepID=B5D203_9BACE
Length = 712
Score = 45.1 bits (105), Expect(2) = 2e-08
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG E G VT + FG FV+ G NGLVH+S+LA R
Sbjct: 638 EGMELPGIVTNITNFGCFVDIGIKENGLVHVSQLADR 674
Score = 36.6 bits (83), Expect(2) = 2e-08
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F N DVV+ Q V VKV+S+D E+KR+ L +K
Sbjct: 675 FVSNPADVVRIHQHVRVKVMSIDHERKRIQLTMK 708
[44][TOP]
>UniRef100_Q82MJ1 Putative transcription accessory protein n=1 Tax=Streptomyces
avermitilis RepID=Q82MJ1_STRAW
Length = 810
Score = 40.8 bits (94), Expect(2) = 3e-08
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Frame = +2
Query: 110 GLRSVCSLRRPL--PSRPPR-LLSWRT*SEGSE----------YEGTVTTVEEFGAFVNF 250
GL +V + R L P R PR T EG E EG VT V FGAFV+
Sbjct: 615 GLPTVSDILRELEKPGRDPRPAFKTATFKEGVEKISDLASGMVLEGVVTNVAAFGAFVDI 674
Query: 251 GANTNGLVHISKLA 292
G + +GLVH+S ++
Sbjct: 675 GVHQDGLVHVSAMS 688
Score = 40.4 bits (93), Expect(2) = 3e-08
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKVL +D +KR+SL L+
Sbjct: 691 FVKDPRDVVKPGDIVKVKVLDIDIPRKRISLTLR 724
[45][TOP]
>UniRef100_C6MJY8 RNA binding S1 domain protein n=1 Tax=Geobacter sp. M18
RepID=C6MJY8_9DELT
Length = 756
Score = 42.4 bits (98), Expect(2) = 3e-08
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG +G VT V FGAFV+ G + +GLVH+S+L+ R
Sbjct: 646 EGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHR 682
Score = 38.9 bits (89), Expect(2) = 3e-08
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+ K+ D V+ G+ V VKVLS D E+KR+SL +K A
Sbjct: 683 YMKDPNDAVKVGEIVKVKVLSADPERKRISLSIKQA 718
[46][TOP]
>UniRef100_B8I5S2 RNA binding S1 domain protein n=1 Tax=Clostridium cellulolyticum
H10 RepID=B8I5S2_CLOCE
Length = 718
Score = 42.4 bits (98), Expect(2) = 3e-08
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L +G GTV V +FGAFV+ G + +GLVHIS+LA +
Sbjct: 629 PKPMLHSDVLHMEDLKQGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADK 681
Score = 38.9 bits (89), Expect(2) = 3e-08
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
+ KN DVV G V VK+L VD E+KR+SL +K
Sbjct: 682 YVKNPMDVVAVGDIVKVKILEVDVERKRISLTMK 715
[47][TOP]
>UniRef100_Q0AXA2 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Syntrophomonas
wolfei subsp. wolfei str. Goettingen RepID=Q0AXA2_SYNWW
Length = 687
Score = 41.6 bits (96), Expect(2) = 3e-08
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
EG EGTV + FGAFV A +GLVHIS+LA+
Sbjct: 595 EGDIIEGTVVRIAPFGAFVEIEAGVDGLVHISQLAN 630
Score = 39.7 bits (91), Expect(2) = 3e-08
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +3
Query: 315 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
+DVVQ +K+ +K+LS+D E+KR+ L LK A+
Sbjct: 637 EDVVQVNEKIKIKILSIDPEEKRIGLSLKEAL 668
[48][TOP]
>UniRef100_UPI0001B4CC56 transcription accessory protein n=1 Tax=Streptomyces griseoflavus
Tu4000 RepID=UPI0001B4CC56
Length = 742
Score = 41.2 bits (95), Expect(2) = 3e-08
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKVL VD +KR+SL L+
Sbjct: 689 FVKDPRDVVKPGDIVKVKVLDVDVPRKRISLTLR 722
Score = 40.0 bits (92), Expect(2) = 3e-08
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
S G EG VT V FGAFV+ G + +GLVH+S ++
Sbjct: 651 SSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMS 686
[49][TOP]
>UniRef100_A7NJ51 RNA binding S1 domain protein n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NJ51_ROSCS
Length = 503
Score = 40.8 bits (94), Expect(2) = 3e-08
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EGTVT + FG FV+ G +GLVH+S+LA
Sbjct: 238 GDNVEGTVTGLAPFGVFVDIGVGKDGLVHVSELA 271
Score = 40.4 bits (93), Expect(2) = 3e-08
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
G + A+DVVQ GQ T KVL VDAE R+SL L+ A
Sbjct: 273 GRVEKAEDVVQVGQTYTFKVLEVDAEGARISLSLRRA 309
[50][TOP]
>UniRef100_A9U7P4 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U7P4_PHYPA
Length = 398
Score = 45.8 bits (107), Expect(2) = 3e-08
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
PLP +L + G E +GTV V +FGAFV+ G ++GLVHIS+L+S
Sbjct: 306 PLPIFRTDVLKIEDLTPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSS 357
Score = 35.4 bits (80), Expect(2) = 3e-08
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
G+ K+ DVV G VTV VL+VD +K RV L +++
Sbjct: 358 GYVKHPMDVVSVGDNVTVWVLNVDLKKGRVGLTMRN 393
[51][TOP]
>UniRef100_Q2JGI6 RNA binding S1 n=1 Tax=Frankia sp. CcI3 RepID=Q2JGI6_FRASC
Length = 864
Score = 41.2 bits (95), Expect(2) = 4e-08
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EGTVT V FGAFV+ G + +GLVH+S ++
Sbjct: 662 GMTLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMS 695
Score = 39.7 bits (91), Expect(2) = 4e-08
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + ++VV+PG VTVKVL VD +KR+SL L+
Sbjct: 698 FVSDPREVVKPGDIVTVKVLDVDIPRKRISLTLR 731
[52][TOP]
>UniRef100_C9NGA0 RNA binding S1 domain protein n=1 Tax=Streptomyces flavogriseus
ATCC 33331 RepID=C9NGA0_9ACTO
Length = 808
Score = 40.4 bits (93), Expect(2) = 4e-08
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Frame = +2
Query: 110 GLRSVCSLRRPL--PSRPPR-LLSWRT*SEGSE----------YEGTVTTVEEFGAFVNF 250
GL +V + R L P R PR T EG E EG VT V FGAFV+
Sbjct: 611 GLPTVTDILRELEKPGRDPRPAFKTATFKEGVEKLGDLVPGMVLEGVVTNVAAFGAFVDV 670
Query: 251 GANTNGLVHISKLA 292
G + +GLVH+S ++
Sbjct: 671 GVHQDGLVHVSAMS 684
Score = 40.4 bits (93), Expect(2) = 4e-08
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKV+ VD +KRVSL L+
Sbjct: 687 FVKDPRDVVKPGDIVKVKVMDVDIPRKRVSLTLR 720
[53][TOP]
>UniRef100_A9F254 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So
ce 56' RepID=A9F254_SORC5
Length = 788
Score = 46.2 bits (108), Expect(2) = 4e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G E EG VT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 659 GMELEGVVTNVTAFGAFVDIGVHQDGLVHVSQLADR 694
Score = 34.7 bits (78), Expect(2) = 4e-08
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
F K+ +V + G+K+ V+VL +D +KR+SL K A
Sbjct: 695 FVKDPNEVAKVGEKIKVRVLEIDLVRKRISLTAKKGGA 732
[54][TOP]
>UniRef100_A4TUT2 Transcriptional accessory protein n=1 Tax=Magnetospirillum
gryphiswaldense RepID=A4TUT2_9PROT
Length = 779
Score = 42.7 bits (99), Expect(2) = 4e-08
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVH+S LA R
Sbjct: 657 GMILEGVVTNVTNFGAFVDIGVHQDGLVHVSALADR 692
Score = 38.1 bits (87), Expect(2) = 4e-08
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+PG V+VKVL VD ++KR++L ++
Sbjct: 693 FVKDPHEVVKPGDVVSVKVLEVDLKRKRIALTMR 726
[55][TOP]
>UniRef100_C6B3G7 RNA binding S1 domain protein n=1 Tax=Rhizobium leguminosarum bv.
trifolii WSM1325 RepID=C6B3G7_RHILS
Length = 769
Score = 45.4 bits (106), Expect(2) = 4e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 650 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 685
Score = 35.4 bits (80), Expect(2) = 4e-08
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+ G V V+V+ VDA++KR++L +K
Sbjct: 686 FVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMK 719
[56][TOP]
>UniRef100_B5ZS43 RNA binding S1 domain protein n=1 Tax=Rhizobium leguminosarum bv.
trifolii WSM2304 RepID=B5ZS43_RHILW
Length = 769
Score = 45.4 bits (106), Expect(2) = 4e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 650 GMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 685
Score = 35.4 bits (80), Expect(2) = 4e-08
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+ G V V+V+ VDA++KR++L +K
Sbjct: 686 FVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMK 719
[57][TOP]
>UniRef100_B3PRI3 Probable transcriptional accessory protein (RNA binding S1 domain)
n=1 Tax=Rhizobium etli CIAT 652 RepID=B3PRI3_RHIE6
Length = 769
Score = 45.4 bits (106), Expect(2) = 4e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 650 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 685
Score = 35.4 bits (80), Expect(2) = 4e-08
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+ G V V+V+ VDA++KR++L +K
Sbjct: 686 FVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMK 719
[58][TOP]
>UniRef100_B9JAJ3 RNA-binding domain S1-containing transcriptional regulator n=1
Tax=Agrobacterium radiobacter K84 RepID=B9JAJ3_AGRRK
Length = 769
Score = 45.1 bits (105), Expect(2) = 4e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 650 GMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 685
Score = 35.8 bits (81), Expect(2) = 4e-08
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++V+ G V VKV+ VDA++KR+SL ++
Sbjct: 686 FVKDPHEIVKAGDVVKVKVVDVDAKRKRISLTMR 719
[59][TOP]
>UniRef100_C7QJM7 RNA binding S1 domain protein n=1 Tax=Catenulispora acidiphila DSM
44928 RepID=C7QJM7_CATAD
Length = 838
Score = 41.6 bits (96), Expect(2) = 4e-08
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKVL VDA +KR++L L+
Sbjct: 696 FVKDPRDVVKPGDVVRVKVLDVDAVRKRIALTLR 729
Score = 39.3 bits (90), Expect(2) = 4e-08
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EG VT V FGAFV+ G + +GLVHIS L+
Sbjct: 660 GMILEGVVTNVAAFGAFVDVGVHQDGLVHISALS 693
[60][TOP]
>UniRef100_A9NHV1 Tex protein-related transcription accessory protein (S1 RNA binding
domain) n=1 Tax=Acholeplasma laidlawii PG-8A
RepID=A9NHV1_ACHLI
Length = 724
Score = 46.2 bits (108), Expect(2) = 4e-08
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G E EGTV V +FGAFV+ G +GLVHISKL+++
Sbjct: 651 GMELEGTVRNVTDFGAFVDVGLKNDGLVHISKLSNK 686
Score = 34.7 bits (78), Expect(2) = 4e-08
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F K+ KDVV GQ VTV VL++D +K +V L +
Sbjct: 687 FVKHPKDVVSVGQIVTVWVLNIDRDKGQVGLTM 719
[61][TOP]
>UniRef100_UPI0001AEF256 transcription accessory protein n=1 Tax=Streptomyces ghanaensis
ATCC 14672 RepID=UPI0001AEF256
Length = 792
Score = 40.8 bits (94), Expect(2) = 4e-08
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKVL VD +KR+SL L+
Sbjct: 688 FVKDPRDVVKPGDIVKVKVLDVDIPRKRISLTLR 721
Score = 40.0 bits (92), Expect(2) = 4e-08
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
S G EG VT V FGAFV+ G + +GLVH+S ++
Sbjct: 650 SSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMS 685
[62][TOP]
>UniRef100_UPI00019083B0 probable transcriptional accessory protein (RNA binding S1 domain)
n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI00019083B0
Length = 195
Score = 45.4 bits (106), Expect(2) = 4e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 110 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 145
Score = 35.4 bits (80), Expect(2) = 4e-08
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+ G V V+V+ VDA++KR++L +K
Sbjct: 146 FVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMK 179
[63][TOP]
>UniRef100_UPI00019042F2 probable transcriptional accessory protein (RNA binding S1 domain)
n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019042F2
Length = 187
Score = 45.4 bits (106), Expect(2) = 4e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 68 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 103
Score = 35.4 bits (80), Expect(2) = 4e-08
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+ G V V+V+ VDA++KR++L +K
Sbjct: 104 FVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMK 137
[64][TOP]
>UniRef100_UPI0001B53EE5 transcription accessory protein n=1 Tax=Streptomyces sp. SPB78
RepID=UPI0001B53EE5
Length = 1218
Score = 41.2 bits (95), Expect(2) = 5e-08
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Frame = +2
Query: 110 GLRSVCSLRRPL--PSRPPR-LLSWRT*SEGSE----------YEGTVTTVEEFGAFVNF 250
GL +V + R L P R PR T EG E EG VT V FGAFV+
Sbjct: 593 GLPTVTDILRELEKPGRDPRPAFRTATFKEGVEKLSDLEPGMVLEGVVTNVAAFGAFVDI 652
Query: 251 GANTNGLVHISKLA 292
G + +GLVH+S L+
Sbjct: 653 GVHQDGLVHVSALS 666
Score = 39.3 bits (90), Expect(2) = 5e-08
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++VV+PG V VKVL VD +KR+SL L+
Sbjct: 669 FVKDPREVVKPGDIVKVKVLDVDLPRKRISLTLR 702
[65][TOP]
>UniRef100_UPI0001B4D0A3 transcriptional accessory protein n=1 Tax=Streptomyces lividans
TK24 RepID=UPI0001B4D0A3
Length = 780
Score = 40.4 bits (93), Expect(2) = 5e-08
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Frame = +2
Query: 110 GLRSVCSLRRPL--PSRPPR-LLSWRT*SEGSE----------YEGTVTTVEEFGAFVNF 250
GL +V + R L P R PR T EG E EG VT V FGAFV+
Sbjct: 613 GLPTVTDILRELEKPGRDPRPAFKTATFKEGVEKISDLSSGMVLEGVVTNVAAFGAFVDV 672
Query: 251 GANTNGLVHISKLA 292
G + +GLVH+S ++
Sbjct: 673 GVHQDGLVHVSAMS 686
Score = 40.0 bits (92), Expect(2) = 5e-08
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKV+ VD +KR+SL L+
Sbjct: 689 FVKDPRDVVKPGDIVKVKVMDVDIPRKRISLTLR 722
[66][TOP]
>UniRef100_Q9X7P9 Putative transcriptional accessory protein n=1 Tax=Streptomyces
coelicolor RepID=Q9X7P9_STRCO
Length = 780
Score = 40.4 bits (93), Expect(2) = 5e-08
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Frame = +2
Query: 110 GLRSVCSLRRPL--PSRPPR-LLSWRT*SEGSE----------YEGTVTTVEEFGAFVNF 250
GL +V + R L P R PR T EG E EG VT V FGAFV+
Sbjct: 613 GLPTVTDILRELEKPGRDPRPAFKTATFKEGVEKISDLSSGMVLEGVVTNVAAFGAFVDV 672
Query: 251 GANTNGLVHISKLA 292
G + +GLVH+S ++
Sbjct: 673 GVHQDGLVHVSAMS 686
Score = 40.0 bits (92), Expect(2) = 5e-08
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKV+ VD +KR+SL L+
Sbjct: 689 FVKDPRDVVKPGDIVKVKVMDVDIPRKRISLTLR 722
[67][TOP]
>UniRef100_Q6SGM3 S1 RNA binding domain protein n=1 Tax=uncultured marine bacterium
463 RepID=Q6SGM3_9BACT
Length = 772
Score = 43.1 bits (100), Expect(2) = 5e-08
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EGTVT V FGAF++ G + +GLVHIS LA +
Sbjct: 655 EGTVTNVTNFGAFIDIGVHQDGLVHISALAEK 686
Score = 37.4 bits (85), Expect(2) = 5e-08
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+ G V VKV+ VDA +KR+ L ++
Sbjct: 687 FVKDPRDVVKAGDVVRVKVMEVDAPRKRIGLSMR 720
[68][TOP]
>UniRef100_B7RVW5 S1 RNA binding domain protein n=1 Tax=marine gamma proteobacterium
HTCC2148 RepID=B7RVW5_9GAMM
Length = 772
Score = 43.1 bits (100), Expect(2) = 5e-08
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EGTVT V FGAF++ G + +GLVHIS LA +
Sbjct: 655 EGTVTNVTNFGAFIDIGVHQDGLVHISALAEK 686
Score = 37.4 bits (85), Expect(2) = 5e-08
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+ G V VKV+ VDA +KR+ L ++
Sbjct: 687 FVKDPRDVVKAGDVVRVKVMEVDAPRKRIGLSMR 720
[69][TOP]
>UniRef100_B1VTW9 Putative transcription accessory protein n=1 Tax=Streptomyces
griseus subsp. griseus NBRC 13350 RepID=B1VTW9_STRGG
Length = 843
Score = 40.4 bits (93), Expect(2) = 5e-08
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKV+ VD +KR+SL L+
Sbjct: 722 FVKDPRDVVKPGDIVKVKVMDVDVPRKRISLTLR 755
Score = 40.0 bits (92), Expect(2) = 5e-08
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Frame = +2
Query: 77 LAGARWRSPVSGLRSVCSLRRPL--PSRPPR-LLSWRT*SEGSE----------YEGTVT 217
L A + + GL +V + + L P R PR T EG E EG VT
Sbjct: 635 LRAADFVDDMFGLPTVTDILKELEKPGRDPRPAFRTATFKEGVEKLGDLEPGMVLEGVVT 694
Query: 218 TVEEFGAFVNFGANTNGLVHISKLA 292
V FGAFV+ G + +GLVH+S L+
Sbjct: 695 NVAAFGAFVDVGVHQDGLVHVSALS 719
[70][TOP]
>UniRef100_Q92DB8 Lin0897 protein n=1 Tax=Listeria innocua RepID=Q92DB8_LISIN
Length = 725
Score = 47.4 bits (111), Expect(2) = 5e-08
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 33.1 bits (74), Expect(2) = 5e-08
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
F KN DVV G VTV V VD +K R++L +++
Sbjct: 685 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRN 719
[71][TOP]
>UniRef100_A0AH17 Complete genome n=1 Tax=Listeria welshimeri serovar 6b str.
SLCC5334 RepID=A0AH17_LISW6
Length = 725
Score = 47.4 bits (111), Expect(2) = 5e-08
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 33.1 bits (74), Expect(2) = 5e-08
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
F KN DVV G VTV V VD +K R++L +++
Sbjct: 685 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRN 719
[72][TOP]
>UniRef100_A8W0E6 Stage II sporulation E family protein n=1 Tax=Bacillus
selenitireducens MLS10 RepID=A8W0E6_9BACI
Length = 724
Score = 44.7 bits (104), Expect(2) = 5e-08
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 289
+G E EGTV V +FGAFV+ G +GLVH+SKL
Sbjct: 650 KGMELEGTVRNVVDFGAFVDIGVKQDGLVHVSKL 683
Score = 35.8 bits (81), Expect(2) = 5e-08
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +3
Query: 291 RLGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
R GF KN DVV G VTV V SVD K R++L +
Sbjct: 684 RKGFVKNPMDVVNVGDVVTVWVDSVDVHKGRIALTM 719
[73][TOP]
>UniRef100_C7ICV4 RNA binding S1 domain protein n=1 Tax=Clostridium papyrosolvens DSM
2782 RepID=C7ICV4_9CLOT
Length = 718
Score = 42.0 bits (97), Expect(2) = 5e-08
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L+ G GTV V +FGAFV+ G + +GLVHIS+LA +
Sbjct: 629 PKPMLHSDVLNMEDLKAGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADK 681
Score = 38.5 bits (88), Expect(2) = 5e-08
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F KN DVV G V VKV+ VD E+KR+SL ++
Sbjct: 682 FVKNPMDVVAVGDIVKVKVIEVDVERKRISLTMR 715
[74][TOP]
>UniRef100_UPI0001B4E1EC transcriptional accessory protein n=1 Tax=Streptomyces
viridochromogenes DSM 40736 RepID=UPI0001B4E1EC
Length = 794
Score = 40.8 bits (94), Expect(2) = 5e-08
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKVL VD +KR+SL L+
Sbjct: 692 FVKDPRDVVKPGDIVKVKVLDVDIPRKRISLTLR 725
Score = 39.7 bits (91), Expect(2) = 5e-08
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
S G EG VT V FGAFV+ G + +GLVH+S ++
Sbjct: 654 SAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMS 689
[75][TOP]
>UniRef100_UPI0001AF29A2 putative transcription accessory protein n=1 Tax=Streptomyces
roseosporus NRRL 11379 RepID=UPI0001AF29A2
Length = 771
Score = 40.4 bits (93), Expect(2) = 5e-08
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKV+ VD +KR+SL L+
Sbjct: 689 FVKDPRDVVKPGDIVKVKVMDVDVPRKRISLTLR 722
Score = 40.0 bits (92), Expect(2) = 5e-08
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Frame = +2
Query: 77 LAGARWRSPVSGLRSVCSLRRPL--PSRPPR-LLSWRT*SEGSE----------YEGTVT 217
L A + + GL +V + + L P R PR T EG E EG VT
Sbjct: 602 LRAADFVDDMFGLPTVTDILKELEKPGRDPRPAFRTATFKEGVEKLGDLEPGMVLEGVVT 661
Query: 218 TVEEFGAFVNFGANTNGLVHISKLA 292
V FGAFV+ G + +GLVH+S L+
Sbjct: 662 NVAAFGAFVDVGVHQDGLVHVSALS 686
[76][TOP]
>UniRef100_C4EWN8 SSU ribosomal protein S1P n=1 Tax=Thermanaerovibrio acidaminovorans
DSM 6589 RepID=C4EWN8_9BACT
Length = 504
Score = 43.9 bits (102), Expect(2) = 5e-08
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +3
Query: 285 SWRLGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
SW+ G AKD+VQ G KV VKV+ +D E RVSL LK A
Sbjct: 243 SWQRG--AKAKDLVQKGDKVKVKVIGIDRENNRVSLSLKQA 281
Score = 36.6 bits (83), Expect(2) = 5e-08
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
EG EG V+++ FG FVN GA GLVHI++L+
Sbjct: 210 EGDILEGEVSSITSFGVFVNLGA-MEGLVHITELS 243
[77][TOP]
>UniRef100_A7GN35 RNA binding S1 domain protein n=1 Tax=Bacillus cytotoxicus NVH
391-98 RepID=A7GN35_BACCN
Length = 382
Score = 41.6 bits (96), Expect(2) = 5e-08
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
DV++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 DVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 38.9 bits (89), Expect(2) = 5e-08
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASRVHQERQGRGS 328
EG EGTV + +FGAFVN G +GLVHIS+++ ER G+ S
Sbjct: 188 EGEIVEGTVQRLTDFGAFVNVG-GVDGLVHISQIS----HERVGQPS 229
Score = 39.3 bits (90), Expect(2) = 9e-07
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 306 KNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
KN +V++ GQ+V VKVL V+A +KR+SL +K A+
Sbjct: 312 KNPNEVLEIGQEVKVKVLEVNAAEKRISLSIKEAL 346
Score = 37.0 bits (84), Expect(2) = 9e-07
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTV + FGAFV GLVH+S++A+R
Sbjct: 274 GDVREGTVNRIVTFGAFVEILPGVEGLVHVSQIANR 309
[78][TOP]
>UniRef100_C8N9I1 Histidine triad domain-containing protein n=1 Tax=Cardiobacterium
hominis ATCC 15826 RepID=C8N9I1_9GAMM
Length = 769
Score = 42.7 bits (99), Expect(2) = 7e-08
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASRVHQE 310
G EG V+ V FGAFV+ G + +GLVHIS LA R Q+
Sbjct: 659 GMILEGVVSNVANFGAFVDIGVHQDGLVHISALADRYVQD 698
Score = 37.4 bits (85), Expect(2) = 7e-08
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
+ ++ +D+V+ G V VKVL VDAE+KR++L ++
Sbjct: 695 YVQDPRDIVKAGDVVKVKVLEVDAERKRIALTMR 728
[79][TOP]
>UniRef100_C6XJK5 RNA binding S1 domain protein n=1 Tax=Hirschia baltica ATCC 49814
RepID=C6XJK5_HIRBI
Length = 736
Score = 46.2 bits (108), Expect(2) = 7e-08
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
+ G + EGTVT V FGAFV+ G + +GLVHIS+LA +
Sbjct: 653 NSGMKLEGTVTNVTAFGAFVDIGVHQDGLVHISQLADK 690
Score = 33.9 bits (76), Expect(2) = 7e-08
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
F + D+V+ G V V V+ VD ++KR+ L +KS
Sbjct: 691 FVSDPHDIVKAGDIVNVTVMEVDVQRKRIGLSMKS 725
[80][TOP]
>UniRef100_UPI000196798C hypothetical protein SUBVAR_02860 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI000196798C
Length = 719
Score = 43.5 bits (101), Expect(2) = 7e-08
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P ++S G E GTV V +FGAFV+ G + +GLVHIS++++R
Sbjct: 631 PKPLLRSDVMSLEDLKPGMELTGTVRNVIDFGAFVDLGVHQDGLVHISQISNR 683
Score = 36.6 bits (83), Expect(2) = 7e-08
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++V++ G V VKVLSVD KKR++L +K
Sbjct: 684 FIKHPREVLKVGDIVKVKVLSVDVAKKRIALTMK 717
[81][TOP]
>UniRef100_B0MH09 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
14662 RepID=B0MH09_9FIRM
Length = 713
Score = 44.7 bits (104), Expect(2) = 7e-08
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG + +GTV V +FGAFV+ G + +GLVHIS++A R
Sbjct: 641 EGMKLKGTVRNVIDFGAFVDIGVHQDGLVHISQMADR 677
Score = 35.4 bits (80), Expect(2) = 7e-08
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F K+ +VV G V V VLSVD EKKR+ L ++ +
Sbjct: 678 FVKHPLEVVSVGDVVDVTVLSVDLEKKRIQLSMRKS 713
[82][TOP]
>UniRef100_UPI0001AEDDFE transcriptional accessory protein n=1 Tax=Streptomyces albus J1074
RepID=UPI0001AEDDFE
Length = 807
Score = 40.4 bits (93), Expect(2) = 7e-08
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++VV+PG V VKV+ VDA +KR+SL L+
Sbjct: 691 FVKDPREVVKPGDIVKVKVMEVDAARKRISLTLR 724
Score = 39.7 bits (91), Expect(2) = 7e-08
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Frame = +2
Query: 110 GLRSVCSLRRPL--PSRPPR-LLSWRT*SEGSE----------YEGTVTTVEEFGAFVNF 250
GL +V + R L P R PR T EG E EG VT V FGAFV+
Sbjct: 615 GLPTVTDILRELEKPGRDPRPAFRTATFREGVEKLSDLEAGMVLEGVVTNVAAFGAFVDV 674
Query: 251 GANTNGLVHISKLA 292
G + +GLVH+S ++
Sbjct: 675 GVHQDGLVHVSAMS 688
[83][TOP]
>UniRef100_UPI0001B4F31E transcription accessory protein n=1 Tax=Streptomyces hygroscopicus
ATCC 53653 RepID=UPI0001B4F31E
Length = 800
Score = 40.8 bits (94), Expect(2) = 7e-08
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKVL VD +KR+SL L+
Sbjct: 689 FVKDPRDVVKPGDIVRVKVLDVDIPRKRISLTLR 722
Score = 39.3 bits (90), Expect(2) = 7e-08
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Frame = +2
Query: 110 GLRSVCSLRRPL--PSRPPR-LLSWRT*SEGSE----------YEGTVTTVEEFGAFVNF 250
GL +V + + L P R PR T EG E EG VT V FGAFV+
Sbjct: 613 GLPTVTDILKELEKPGRDPRPAFKTATFKEGVEKIGDLASGMILEGVVTNVAAFGAFVDV 672
Query: 251 GANTNGLVHISKLA 292
G + +GLVH+S ++
Sbjct: 673 GVHQDGLVHVSAMS 686
[84][TOP]
>UniRef100_C3BI75 30S ribosomal protein S1 n=1 Tax=Bacillus pseudomycoides DSM 12442
RepID=C3BI75_9BACI
Length = 382
Score = 41.6 bits (96), Expect(2) = 7e-08
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G N +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-NVDGLVHISQISHDRVEQ 227
Score = 38.5 bits (88), Expect(2) = 7e-08
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
DV+ GQ V VKVLSVDA+ +R+SL +K+A
Sbjct: 230 DVLTQGQSVKVKVLSVDADTQRISLSIKAA 259
Score = 40.0 bits (92), Expect(2) = 4e-06
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +3
Query: 306 KNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
KN +V++ GQ+V VKVL V A +KR+SL +K AV
Sbjct: 312 KNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAV 346
Score = 33.9 bits (76), Expect(2) = 4e-06
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG V + FGAFV GLVH+S++A+R
Sbjct: 274 GDIREGIVKRIVTFGAFVEILPGVEGLVHVSQIANR 309
[85][TOP]
>UniRef100_Q5NY37 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum
EbN1 RepID=Q5NY37_AZOSE
Length = 782
Score = 45.1 bits (105), Expect(2) = 8e-08
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVHIS LA R
Sbjct: 650 GMMLEGTVTNVTNFGAFVDVGVHQDGLVHISALADR 685
Score = 34.7 bits (78), Expect(2) = 8e-08
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ VV+ GQ V VKVL VD +KR++L ++
Sbjct: 686 FVKDPHSVVKAGQVVKVKVLEVDLARKRIALTMR 719
[86][TOP]
>UniRef100_Q74GL1 S1 RNA binding domain protein n=1 Tax=Geobacter sulfurreducens
RepID=Q74GL1_GEOSL
Length = 761
Score = 40.0 bits (92), Expect(2) = 8e-08
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
EG +G VT V FGAFV+ G + +GLVH+S L+
Sbjct: 649 EGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLS 683
Score = 39.7 bits (91), Expect(2) = 8e-08
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F K+ + V+ GQ V VKVLSVD ++KR+SL ++ A
Sbjct: 686 FVKDPAEAVRVGQVVQVKVLSVDVQRKRISLSIREA 721
[87][TOP]
>UniRef100_Q39Z96 RNA binding S1 n=1 Tax=Geobacter metallireducens GS-15
RepID=Q39Z96_GEOMG
Length = 757
Score = 42.7 bits (99), Expect(2) = 8e-08
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG +G VT V FGAFV+ G + +GLVH+S L++R
Sbjct: 648 EGMVLQGVVTNVTAFGAFVDIGVHQDGLVHVSHLSTR 684
Score = 37.0 bits (84), Expect(2) = 8e-08
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
F K+ + V+ G+ V VKVL+VD +KR+SL ++ A+
Sbjct: 685 FVKDPNEAVRVGEVVKVKVLAVDVPRKRISLSIREAM 721
[88][TOP]
>UniRef100_UPI00018506B3 transcription accessory protein n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI00018506B3
Length = 727
Score = 43.5 bits (101), Expect(2) = 9e-08
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 289
G E +GTV V +FGAFV+ G +GLVHISKL
Sbjct: 652 GMELQGTVRNVVDFGAFVDIGVKQDGLVHISKL 684
Score = 36.2 bits (82), Expect(2) = 9e-08
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
GF K+ DVV GQ VTV V SVD +K RV+L + S
Sbjct: 687 GFVKHPLDVVSVGQVVTVWVDSVDVQKGRVALTMLS 722
[89][TOP]
>UniRef100_UPI0001851521 transcription accessory protein n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851521
Length = 723
Score = 43.5 bits (101), Expect(2) = 9e-08
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 289
G E +GTV V +FGAFV+ G +GLVHISKL
Sbjct: 648 GMELQGTVRNVVDFGAFVDIGVKQDGLVHISKL 680
Score = 36.2 bits (82), Expect(2) = 9e-08
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
GF K+ DVV GQ VTV V SVD +K RV+L + S
Sbjct: 683 GFVKHPLDVVSVGQVVTVWVDSVDVQKGRVALTMLS 718
[90][TOP]
>UniRef100_A9KST1 RNA binding S1 domain protein n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KST1_CLOPH
Length = 722
Score = 43.9 bits (102), Expect(2) = 9e-08
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 11/62 (17%)
Frame = +2
Query: 146 PSRPPR-----------LLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
PSR PR +L + +EG +GTV V +FGAFV+ G + +GLVHIS+L+
Sbjct: 625 PSRDPREEMPKPILRTDVLDMKDLTEGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQLS 684
Query: 293 SR 298
+
Sbjct: 685 KQ 686
Score = 35.8 bits (81), Expect(2) = 9e-08
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F K+ D+V G V VKVLSVD KKR+ L +
Sbjct: 688 FVKHPLDIVSVGDIVEVKVLSVDVSKKRIQLSM 720
[91][TOP]
>UniRef100_C4WBM3 Protein YhgF n=1 Tax=Staphylococcus warneri L37603
RepID=C4WBM3_STAWA
Length = 716
Score = 46.6 bits (109), Expect(2) = 9e-08
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Frame = +2
Query: 146 PSRPPR-----------LLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
P+R PR +LS SEG + GTV V +FGAFV+ G +GLVH+SKL+
Sbjct: 617 PNRDPRDEFETPILKSDVLSIEDLSEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLS 676
Query: 293 SR 298
+
Sbjct: 677 KK 678
Score = 33.1 bits (74), Expect(2) = 9e-08
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN D+V G V V +LS+D +K +VSL +
Sbjct: 679 FVKNPMDIVSVGDIVDVWILSIDTQKDKVSLTI 711
[92][TOP]
>UniRef100_C4G634 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4G634_ABIDE
Length = 716
Score = 43.1 bits (100), Expect(2) = 9e-08
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P ++ + EG +GTV V +FGAFV+ G + +GLVHIS+L+ +
Sbjct: 625 PAPILRTDVMDMKDLKEGMVMKGTVRNVIDFGAFVDIGVHQDGLVHISELSDK 677
Score = 36.6 bits (83), Expect(2) = 9e-08
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F K+ +VV G V VKV+ VD KKR+SL +K A
Sbjct: 679 FVKHPLEVVSVGDIVDVKVIGVDIPKKRISLSIKQA 714
[93][TOP]
>UniRef100_Q47TS6 RNA binding S1:Resolvase, RNase H-like fold n=1 Tax=Thermobifida
fusca YX RepID=Q47TS6_THEFY
Length = 777
Score = 41.6 bits (96), Expect(2) = 9e-08
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKVL VD +KR+SL L+
Sbjct: 688 FVKDPRDVVKPGDIVRVKVLDVDVRRKRISLTLR 721
Score = 38.1 bits (87), Expect(2) = 9e-08
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EG VT V FGAFV+ G + +GLVH+S ++
Sbjct: 652 GMVLEGVVTNVAAFGAFVDVGVHHDGLVHVSAMS 685
[94][TOP]
>UniRef100_B8BU42 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8BU42_THAPS
Length = 398
Score = 41.2 bits (95), Expect(2) = 9e-08
Identities = 16/38 (42%), Positives = 29/38 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
F N +DVV+ G+K+TV+++SVD EK ++++ ++S A
Sbjct: 180 FVANVEDVVKAGEKITVRIVSVDTEKNQIAVTMRSEEA 217
Score = 38.5 bits (88), Expect(2) = 9e-08
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G+ E TV T+ +GAF++ GA ++ LVH+S+L+
Sbjct: 144 GASVEATVKTITAYGAFLDIGAKSDALVHVSRLS 177
[95][TOP]
>UniRef100_B5H4N7 Transcription accessory protein n=1 Tax=Streptomyces
pristinaespiralis ATCC 25486 RepID=B5H4N7_STRPR
Length = 799
Score = 41.2 bits (95), Expect(2) = 1e-07
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Frame = +2
Query: 47 SVLRPVRGAWLAGARWRSPVSGLRSVCSLRRPL--PSRPPR-LLSWRT*SEGSE------ 199
SVLR +R A + GL +V + R L P R PR T EG E
Sbjct: 593 SVLRSLRPAEFVDETF-----GLPTVTDILRELEKPGRDPRPAFRTATFKEGVEKIGDLA 647
Query: 200 ----YEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
EG VT V FGAFV+ G + +GLVH+S ++
Sbjct: 648 SGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMS 682
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+ G V VKVL VD +KR+SL L+
Sbjct: 685 FVKDPRDVVKSGDVVKVKVLDVDIPRKRISLTLR 718
[96][TOP]
>UniRef100_Q2KBT4 Probable transcriptional accessory protein (RNA binding S1 domain)
n=1 Tax=Rhizobium etli CFN 42 RepID=Q2KBT4_RHIEC
Length = 769
Score = 45.4 bits (106), Expect(2) = 1e-07
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 650 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 685
Score = 33.9 bits (76), Expect(2) = 1e-07
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+ G V V+V+ VDA++KR+ L ++
Sbjct: 686 FVKDPHEVVKAGDVVKVRVVEVDAKRKRIGLSMR 719
[97][TOP]
>UniRef100_Q1MKQ5 Putative RNA-binding domain transcriptional regulator n=1
Tax=Rhizobium leguminosarum bv. viciae 3841
RepID=Q1MKQ5_RHIL3
Length = 769
Score = 45.4 bits (106), Expect(2) = 1e-07
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 650 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 685
Score = 33.9 bits (76), Expect(2) = 1e-07
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+ G V V+V+ VDA++KR+ L ++
Sbjct: 686 FVKDPHEVVKAGDVVKVRVVEVDAKRKRIGLSMR 719
[98][TOP]
>UniRef100_C2KZ93 S1 domain RNA-binding protein n=1 Tax=Oribacterium sinus F0268
RepID=C2KZ93_9FIRM
Length = 753
Score = 42.4 bits (98), Expect(2) = 1e-07
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L EG +GTV V +FGAFV+ G + +GLVHIS L+ +
Sbjct: 664 PAPILREDVLELEDLKEGMVLQGTVRNVIDFGAFVDIGVHQDGLVHISALSKK 716
Score = 37.0 bits (84), Expect(2) = 1e-07
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ DVV+ G V VKVLSVD +K++SL +K
Sbjct: 717 FVKHPLDVVKLGDIVKVKVLSVDVARKKISLSMK 750
[99][TOP]
>UniRef100_UPI0001788115 Tex-like protein protein-like protein n=1 Tax=Geobacillus sp.
Y412MC10 RepID=UPI0001788115
Length = 740
Score = 43.1 bits (100), Expect(2) = 1e-07
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
PLP +L G E +GTV V +FGAFV+ G ++GLVHIS+L+
Sbjct: 646 PLPIFRQDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLS 696
Score = 36.2 bits (82), Expect(2) = 1e-07
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
GF K+ DVV G VTV VL+VD +K RV L ++
Sbjct: 698 GFVKHPMDVVSVGDNVTVWVLNVDLKKGRVGLTMR 732
[100][TOP]
>UniRef100_UPI0001B44404 hypothetical protein LmonocytFSL_06170 n=1 Tax=Listeria
monocytogenes FSL J2-003 RepID=UPI0001B44404
Length = 725
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 685 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[101][TOP]
>UniRef100_UPI0001B43D06 hypothetical protein LmonocytogFSL_06115 n=1 Tax=Listeria
monocytogenes FSL N1-017 RepID=UPI0001B43D06
Length = 725
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 685 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[102][TOP]
>UniRef100_Q8Y8K3 Lmo0898 protein n=2 Tax=Listeria monocytogenes RepID=Q8Y8K3_LISMO
Length = 725
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 685 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[103][TOP]
>UniRef100_Q721R8 S1 RNA binding domain protein n=1 Tax=Listeria monocytogenes str.
4b F2365 RepID=Q721R8_LISMF
Length = 725
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 685 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[104][TOP]
>UniRef100_Q4EKE0 S1 RNA binding domain protein n=1 Tax=Listeria monocytogenes str.
4b H7858 RepID=Q4EKE0_LISMO
Length = 725
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 685 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[105][TOP]
>UniRef100_C8KAD9 S1 RNA binding domain-containing protein n=2 Tax=Listeria
monocytogenes RepID=C8KAD9_LISMO
Length = 725
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 685 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[106][TOP]
>UniRef100_C8K102 S1 RNA-binding domain-containing protein n=2 Tax=Listeria
monocytogenes RepID=C8K102_LISMO
Length = 725
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 685 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[107][TOP]
>UniRef100_C8JTR8 S1 RNA binding domain-containing protein n=1 Tax=Listeria
monocytogenes FSL N3-165 RepID=C8JTR8_LISMO
Length = 725
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 685 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717
[108][TOP]
>UniRef100_Q4BYV4 RNA binding S1 n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4BYV4_CROWT
Length = 717
Score = 44.7 bits (104), Expect(2) = 1e-07
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
SEG EG +T V +FGAF++ G + +GL+HIS+LA+
Sbjct: 644 SEGMILEGVITNVVKFGAFIDIGVHQDGLIHISQLAN 680
Score = 34.7 bits (78), Expect(2) = 1e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + +VV+ G+ V VKVL +D + KRVSL +K
Sbjct: 682 FVNDTNEVVKVGEVVKVKVLEIDEKLKRVSLSMK 715
[109][TOP]
>UniRef100_A3IKT0 RNA binding S1 n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IKT0_9CHRO
Length = 717
Score = 43.5 bits (101), Expect(2) = 1e-07
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
+EG EG +T V FGAFV+ G + +GL+HIS+LA+
Sbjct: 644 TEGMILEGVITNVVNFGAFVDIGVHQDGLIHISQLAN 680
Score = 35.8 bits (81), Expect(2) = 1e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + K+VV+ G+ V VKVL +D + KR+SL +K
Sbjct: 682 FVSDPKEVVKVGEVVKVKVLEIDQKLKRISLSMK 715
[110][TOP]
>UniRef100_UPI0001B54FC8 RNA-binding S1 domain-containing protein n=1 Tax=Streptomyces sp.
AA4 RepID=UPI0001B54FC8
Length = 788
Score = 41.2 bits (95), Expect(2) = 1e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKVL VD +KR+SL L+
Sbjct: 693 FVKDPRDVVKPGDIVKVKVLDVDVPRKRISLTLR 726
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EG VT V FGAF++ G + +GL H+S L+
Sbjct: 657 GMRLEGVVTNVAAFGAFIDVGVHQDGLAHVSALS 690
[111][TOP]
>UniRef100_B5HSU4 Transcriptional accessory protein n=1 Tax=Streptomyces sviceus ATCC
29083 RepID=B5HSU4_9ACTO
Length = 788
Score = 40.8 bits (94), Expect(2) = 1e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKVL VD +KR+SL L+
Sbjct: 695 FVKDPRDVVKPGDIVKVKVLDVDIPRKRISLTLR 728
Score = 38.5 bits (88), Expect(2) = 1e-07
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
S G EG VT V FGAF++ G + +GL H+S L+
Sbjct: 657 SAGMVLEGVVTNVAAFGAFIDVGVHQDGLAHVSALS 692
[112][TOP]
>UniRef100_C6ZDI5 30S ribosomal protein S1 n=1 Tax=Staphylococcus xylosus
RepID=C6ZDI5_STAXY
Length = 393
Score = 42.0 bits (97), Expect(2) = 1e-07
Identities = 17/31 (54%), Positives = 27/31 (87%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
+V+QPG+KV+VK+LSVD E +R+SL +K+ +
Sbjct: 321 EVLQPGEKVSVKILSVDPENERISLSIKATL 351
Score = 37.4 bits (85), Expect(2) = 1e-07
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
+EG EGTV + FGAFV GLVHIS+++
Sbjct: 277 NEGEVIEGTVVRLTNFGAFVEIQPGVQGLVHISEIS 312
[113][TOP]
>UniRef100_C3DHJ2 30S ribosomal protein S1 n=1 Tax=Bacillus thuringiensis serovar
sotto str. T04001 RepID=C3DHJ2_BACTS
Length = 393
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[114][TOP]
>UniRef100_C2PTN4 30S ribosomal protein S1 n=1 Tax=Bacillus cereus AH621
RepID=C2PTN4_BACCE
Length = 382
Score = 40.4 bits (93), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVNVKVLSVDADTQRISLSIKAA 259
Score = 38.9 bits (89), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDIVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[115][TOP]
>UniRef100_UPI0001B41599 30S ribosomal protein S1 n=1 Tax=Bacillus anthracis str. A1055
RepID=UPI0001B41599
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[116][TOP]
>UniRef100_Q63DN4 Ribosomal protein S1 (30S ribosomal protein S1) n=1 Tax=Bacillus
cereus E33L RepID=Q63DN4_BACCZ
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[117][TOP]
>UniRef100_B9IVM1 Ribosomal protein S1 (30S ribosomal protein S1) n=1 Tax=Bacillus
cereus Q1 RepID=B9IVM1_BACCQ
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[118][TOP]
>UniRef100_Q4MSR0 Ribosomal protein S1 n=1 Tax=Bacillus cereus G9241
RepID=Q4MSR0_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[119][TOP]
>UniRef100_B7IP76 Ribosomal protein S1 n=2 Tax=Bacillus cereus group
RepID=B7IP76_BACC2
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[120][TOP]
>UniRef100_C3HY35 30S ribosomal protein S1 n=1 Tax=Bacillus thuringiensis IBL 200
RepID=C3HY35_BACTU
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[121][TOP]
>UniRef100_C3EIH7 30S ribosomal protein S1 n=1 Tax=Bacillus thuringiensis serovar
kurstaki str. T03a001 RepID=C3EIH7_BACTK
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[122][TOP]
>UniRef100_C3CGG6 30S ribosomal protein S1 n=3 Tax=Bacillus thuringiensis
RepID=C3CGG6_BACTU
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[123][TOP]
>UniRef100_C3C003 30S ribosomal protein S1 n=1 Tax=Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1 RepID=C3C003_BACTU
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[124][TOP]
>UniRef100_C2Z5K2 30S ribosomal protein S1 n=2 Tax=Bacillus cereus RepID=C2Z5K2_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[125][TOP]
>UniRef100_C2YPB9 30S ribosomal protein S1 n=1 Tax=Bacillus cereus AH1271
RepID=C2YPB9_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[126][TOP]
>UniRef100_C2XRN3 30S ribosomal protein S1 n=1 Tax=Bacillus cereus AH603
RepID=C2XRN3_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[127][TOP]
>UniRef100_Q81FS1 SSU ribosomal protein S1P n=2 Tax=Bacillus cereus
RepID=Q81FS1_BACCR
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[128][TOP]
>UniRef100_B7HL08 Ribosomal protein S1 n=2 Tax=Bacillus cereus RepID=B7HL08_BACC7
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[129][TOP]
>UniRef100_C2QQP1 30S ribosomal protein S1 n=1 Tax=Bacillus cereus ATCC 4342
RepID=C2QQP1_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[130][TOP]
>UniRef100_C2Q9N4 30S ribosomal protein S1 n=1 Tax=Bacillus cereus R309803
RepID=C2Q9N4_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
Score = 39.7 bits (91), Expect(2) = 7e-06
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +3
Query: 306 KNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
KN +V++ GQ+VTVKVL V +KR+SL +K A+
Sbjct: 312 KNPNEVLEMGQEVTVKVLEVHVAEKRISLSIKEAL 346
Score = 33.5 bits (75), Expect(2) = 7e-06
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG V + FGAFV GLVH+S++A+R
Sbjct: 274 GDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANR 309
[131][TOP]
>UniRef100_C2PCL6 30S ribosomal protein S1 n=1 Tax=Bacillus cereus MM3
RepID=C2PCL6_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[132][TOP]
>UniRef100_B7HHQ1 Ribosomal protein S1 n=10 Tax=Bacillus cereus group
RepID=B7HHQ1_BACC4
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[133][TOP]
>UniRef100_C2MYJ0 30S ribosomal protein S1 n=1 Tax=Bacillus cereus ATCC 10876
RepID=C2MYJ0_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[134][TOP]
>UniRef100_B5V2S0 Ribosomal protein S1 n=2 Tax=Bacillus cereus RepID=B5V2S0_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[135][TOP]
>UniRef100_B5URX2 Ribosomal protein S1 n=1 Tax=Bacillus cereus AH1134
RepID=B5URX2_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[136][TOP]
>UniRef100_B3Z7M0 Ribosomal protein S1 n=1 Tax=Bacillus cereus NVH0597-99
RepID=B3Z7M0_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[137][TOP]
>UniRef100_A0RBV3 SSU ribosomal protein S1P n=23 Tax=Bacillus cereus group
RepID=A0RBV3_BACAH
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[138][TOP]
>UniRef100_O06000 30S ribosomal protein S1 homolog n=1 Tax=Bacillus cereus ATCC 10987
RepID=RS1H_BACC1
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[139][TOP]
>UniRef100_UPI0001B43B10 hypothetical protein LmonF_10391 n=1 Tax=Listeria monocytogenes FSL
F2-515 RepID=UPI0001B43B10
Length = 301
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 208 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 259
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 261 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 293
[140][TOP]
>UniRef100_Q3ENL3 SSU ribosomal protein S1P n=1 Tax=Bacillus thuringiensis serovar
israelensis ATCC 35646 RepID=Q3ENL3_BACTI
Length = 313
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 161 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 190
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 119 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 158
[141][TOP]
>UniRef100_UPI0001905DA4 probable transcriptional accessory protein (RNA binding S1 domain)
n=1 Tax=Rhizobium etli GR56 RepID=UPI0001905DA4
Length = 256
Score = 45.4 bits (106), Expect(2) = 1e-07
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 137 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 172
Score = 33.9 bits (76), Expect(2) = 1e-07
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+ G V V+V+ VDA++KR+ L ++
Sbjct: 173 FVKDPHEVVKAGDVVKVRVVEVDAKRKRIGLSMR 206
[142][TOP]
>UniRef100_UPI0001B41F87 hypothetical protein LmonL_19961 n=1 Tax=Listeria monocytogenes
LO28 RepID=UPI0001B41F87
Length = 105
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 12 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 63
Score = 32.0 bits (71), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 65 FVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 97
[143][TOP]
>UniRef100_Q0RTD4 Putative transcriptional accessory protein n=1 Tax=Frankia alni
ACN14a RepID=Q0RTD4_FRAAA
Length = 895
Score = 40.8 bits (94), Expect(2) = 1e-07
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EGTVT V FGAFV+ G + +GLVH+S ++
Sbjct: 662 GMTLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMS 695
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + ++V +PG VTVKVL VD +KR+SL L+
Sbjct: 698 FVSDPREVAKPGDIVTVKVLDVDIPRKRISLTLR 731
[144][TOP]
>UniRef100_C8Q161 Protein tex n=1 Tax=Enhydrobacter aerosaccus SK60
RepID=C8Q161_9GAMM
Length = 849
Score = 41.2 bits (95), Expect(2) = 1e-07
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
+EG EG VT V FG FV+ G + +GLVHIS++ +
Sbjct: 693 TEGMTLEGVVTNVTSFGCFVDVGVHQDGLVHISEMGN 729
Score = 37.7 bits (86), Expect(2) = 1e-07
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +3
Query: 324 VQPGQKVTVKVLSVDAEKKRVSLELKS 404
V+PG VTV+V+SVDAE+KRV +KS
Sbjct: 739 VKPGDIVTVRVISVDAERKRVGFSMKS 765
[145][TOP]
>UniRef100_A1R3T9 Putative transcriptional accessory protein n=1 Tax=Arthrobacter
aurescens TC1 RepID=A1R3T9_ARTAT
Length = 818
Score = 42.0 bits (97), Expect(2) = 1e-07
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S L+++
Sbjct: 659 GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALSNK 694
Score = 37.0 bits (84), Expect(2) = 1e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + +++V+ GQ V VKVL D E+KR+SL L+
Sbjct: 695 FVSDPREIVKSGQVVRVKVLEADPERKRISLTLR 728
[146][TOP]
>UniRef100_C9RK55 Tex-like protein protein-like protein n=1 Tax=Fibrobacter
succinogenes subsp. succinogenes S85 RepID=C9RK55_FIBSU
Length = 797
Score = 42.7 bits (99), Expect(2) = 1e-07
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
GS EG VT V FGAFV+ G + +GLVHIS+++ +
Sbjct: 642 GSWMEGVVTNVANFGAFVDIGVHQDGLVHISEISDK 677
Score = 36.2 bits (82), Expect(2) = 1e-07
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
+ +AKDV+ G V V+V++VDA +KR+SL +K
Sbjct: 678 YVTDAKDVLTVGDVVKVRVVAVDANQKRISLSMK 711
[147][TOP]
>UniRef100_UPI00003847A9 COG2183: Transcriptional accessory protein n=1 Tax=Magnetospirillum
magnetotacticum MS-1 RepID=UPI00003847A9
Length = 784
Score = 42.7 bits (99), Expect(2) = 1e-07
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVHIS LA R
Sbjct: 665 GMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADR 700
Score = 36.2 bits (82), Expect(2) = 1e-07
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+PG V VKVL VD +++R++L ++
Sbjct: 701 FVKDPHEVVKPGDLVKVKVLEVDLKRQRIALSMR 734
[148][TOP]
>UniRef100_Q0A8L6 RNA binding S1 domain protein n=1 Tax=Alkalilimnicola ehrlichii
MLHE-1 RepID=Q0A8L6_ALHEH
Length = 782
Score = 45.4 bits (106), Expect(2) = 1e-07
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVHIS LA R
Sbjct: 653 GMVLEGTVTNVTNFGAFVDIGVHQDGLVHISALAER 688
Score = 33.5 bits (75), Expect(2) = 1e-07
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++ +VV+ G V VKV+ VD E+KR+ L ++
Sbjct: 689 FVRDPHEVVKAGDIVKVKVMEVDLERKRIGLSMR 722
[149][TOP]
>UniRef100_C5V4H3 RNA binding S1 domain protein n=1 Tax=Gallionella ferruginea ES-2
RepID=C5V4H3_9PROT
Length = 779
Score = 43.1 bits (100), Expect(2) = 1e-07
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Frame = +2
Query: 86 ARWRSPVSGLRSVCSLRRPL--PSRPPRL-LSWRT*SEGSE----------YEGTVTTVE 226
AR++ GL ++ + R L P PR + T EG E EG VT V
Sbjct: 615 ARYQDEKFGLPTITDILRELDKPGHDPRPEFTTATFREGIEKISDLQPDMILEGVVTNVA 674
Query: 227 EFGAFVNFGANTNGLVHISKLAS 295
FGAFV+ G + +GLVHIS LA+
Sbjct: 675 AFGAFVDIGVHQDGLVHISALAN 697
Score = 35.8 bits (81), Expect(2) = 1e-07
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
F K+ VV+ GQ V VKVL VD ++KR++L ++ A A
Sbjct: 699 FVKDPHTVVKAGQIVKVKVLEVDEKRKRIALTMRLADA 736
[150][TOP]
>UniRef100_A4ST13 Protein yhgF n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449
RepID=A4ST13_AERS4
Length = 768
Score = 41.6 bits (96), Expect(2) = 1e-07
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +2
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG VT V FGAFV+ G + +GLVHIS L R
Sbjct: 653 EGVVTNVTNFGAFVDIGVHQDGLVHISSLTDR 684
Score = 37.4 bits (85), Expect(2) = 1e-07
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++VV+ G V VKVL VDA +KR+SL ++
Sbjct: 685 FVKDPREVVKAGDIVRVKVLEVDAPRKRISLTMR 718
[151][TOP]
>UniRef100_A8ZSR0 RNA binding S1 domain protein n=1 Tax=Desulfococcus oleovorans Hxd3
RepID=A8ZSR0_DESOH
Length = 759
Score = 41.2 bits (95), Expect(2) = 1e-07
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G + G VT + FGAFV+ G + +GLVHIS++A R
Sbjct: 635 GMKLPGIVTNITAFGAFVDIGVHQDGLVHISQMADR 670
Score = 37.7 bits (86), Expect(2) = 1e-07
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
F K+ D+V+ Q+V V VL VD E+KR+SL +K+
Sbjct: 671 FVKSPADIVKVQQRVMVTVLEVDKERKRISLSMKA 705
[152][TOP]
>UniRef100_B8DG61 Putative uncharacterized protein n=1 Tax=Listeria monocytogenes
HCC23 RepID=B8DG61_LISMH
Length = 725
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
P P ++S +G E +GTV V +FGAFV+ G +GLVHISKL++
Sbjct: 632 PAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSN 683
Score = 31.6 bits (70), Expect(2) = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN DVV G VTV V VD +K R++L +
Sbjct: 685 FVKNPMDVVSVGDIVTVWVDEVDTKKNRIALTM 717
[153][TOP]
>UniRef100_C1I438 RNA-binding S1 domain-containing protein n=1 Tax=Clostridium sp.
7_2_43FAA RepID=C1I438_9CLOT
Length = 724
Score = 43.1 bits (100), Expect(2) = 1e-07
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P ++ + SEG GTV V +FGAFV+ G + +GLVH S++A+R
Sbjct: 631 PKPILKTGVIDLKDLSEGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMANR 683
Score = 35.8 bits (81), Expect(2) = 1e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ DVV+ G V VK+L VD+++ R+SL +K
Sbjct: 684 FVKHPLDVVKVGDIVKVKILEVDSKRNRISLSMK 717
[154][TOP]
>UniRef100_B1WZ45 Probable RNA binding S1 protein n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WZ45_CYAA5
Length = 718
Score = 43.1 bits (100), Expect(2) = 1e-07
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
EG EG +T V FGAFV+ G + +GL+HIS+LA+
Sbjct: 646 EGMILEGVITNVVNFGAFVDIGVHQDGLIHISQLAN 681
Score = 35.8 bits (81), Expect(2) = 1e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + K+VV+ G+ V VKVL +D + KR+SL +K
Sbjct: 683 FVSDPKEVVKVGEVVKVKVLEIDEKLKRISLSMK 716
[155][TOP]
>UniRef100_A7VC71 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50
RepID=A7VC71_9CLOT
Length = 716
Score = 42.4 bits (98), Expect(2) = 1e-07
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Frame = +2
Query: 146 PSRPPR-----------LLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
P+R PR +L + EG +GTV V +FGAFV+ G + +GLVHIS+++
Sbjct: 617 PARDPRSEMPQPILRGDILEMKDLKEGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMS 676
Query: 293 SR 298
+
Sbjct: 677 DK 678
Score = 36.6 bits (83), Expect(2) = 1e-07
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ DVV G VTVKV+ VD KKR+ L +K
Sbjct: 679 FIKHPLDVVSVGDIVTVKVMGVDLAKKRIQLTMK 712
[156][TOP]
>UniRef100_C6C261 RNA binding S1 domain protein n=1 Tax=Desulfovibrio salexigens DSM
2638 RepID=C6C261_DESAD
Length = 716
Score = 40.8 bits (94), Expect(2) = 1e-07
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
EG G VT V FGAFV+ G + +GLVHIS++A
Sbjct: 642 EGMILNGIVTNVTAFGAFVDIGVHQDGLVHISRMA 676
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
F ++ VV PGQ + VKVL VD ++KR+SL ++ +
Sbjct: 679 FVRDPATVVHPGQALKVKVLDVDIQRKRISLSMRQS 714
[157][TOP]
>UniRef100_C1SJZ4 Transcriptional accessory protein n=1 Tax=Denitrovibrio acetiphilus
DSM 12809 RepID=C1SJZ4_9BACT
Length = 706
Score = 43.5 bits (101), Expect(2) = 1e-07
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +2
Query: 164 LLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
+LS + EG G V+ V +FGAFV+ G +GLVHIS+LA R
Sbjct: 627 ILSIESLKEGDVLTGKVSNVVDFGAFVDVGLKNDGLVHISQLADR 671
Score = 35.4 bits (80), Expect(2) = 1e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + +VV+ GQ V KVLSVD E+ R+SL +K
Sbjct: 672 FVSDPSEVVKVGQTVKTKVLSVDRERGRLSLSMK 705
[158][TOP]
>UniRef100_A5V0B5 RNA binding S1 domain protein n=1 Tax=Roseiflexus sp. RS-1
RepID=A5V0B5_ROSS1
Length = 514
Score = 40.8 bits (94), Expect(2) = 1e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EGTVT + FG FV+ G +GLVH+S+LA
Sbjct: 241 GDNVEGTVTGMAPFGVFVDIGVGKDGLVHVSELA 274
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
G + A+DVVQ GQ T KVL VDA R+SL L+ A
Sbjct: 276 GRVEKAEDVVQVGQTYTFKVLEVDAAGARISLSLRRA 312
Score = 40.4 bits (93), Expect(2) = 3e-06
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +2
Query: 107 SGLRSVCSLRRPLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISK 286
+G R SLRR + + L +G EGT++ + FGAFV+ G +GLVHIS+
Sbjct: 301 AGARISLSLRRAQRGQKLQQLE-----KGQILEGTISGLAPFGAFVDIGVGRDGLVHISE 355
Query: 287 LAS 295
L++
Sbjct: 356 LSN 358
Score = 34.3 bits (77), Expect(2) = 3e-06
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3
Query: 315 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
+DVV+ G +V V+VL VD + KR+SL L+
Sbjct: 365 EDVVKVGDRVQVRVLDVDPQSKRISLSLR 393
[159][TOP]
>UniRef100_C3A3P1 30S ribosomal protein S1 n=1 Tax=Bacillus mycoides DSM 2048
RepID=C3A3P1_BACMY
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 38.9 bits (89), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDIVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[160][TOP]
>UniRef100_C2TUZ6 30S ribosomal protein S1 n=3 Tax=Bacillus cereus RepID=C2TUZ6_BACCE
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 38.9 bits (89), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDIVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[161][TOP]
>UniRef100_A9VMA6 RNA binding S1 domain protein n=2 Tax=Bacillus cereus group
RepID=A9VMA6_BACWK
Length = 382
Score = 40.0 bits (92), Expect(2) = 1e-07
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
+V++ GQKV VKVLSVDA+ +R+SL +K+A
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259
Score = 38.9 bits (89), Expect(2) = 1e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDIVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQ 227
[162][TOP]
>UniRef100_C0UKG5 Transcriptional accessory protein n=1 Tax=Gordonia bronchialis DSM
43247 RepID=C0UKG5_9ACTO
Length = 852
Score = 41.2 bits (95), Expect(2) = 2e-07
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVH+S +A+R
Sbjct: 684 GMILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANR 719
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + ++VV+ G VTVKV+ VD E+KR+ L L+
Sbjct: 720 FVSDPREVVKSGDIVTVKVMEVDVERKRIGLSLR 753
[163][TOP]
>UniRef100_UPI0001BB068E Tex-like protein protein-like protein n=1 Tax=Gordonia bronchialis
DSM 43247 RepID=UPI0001BB068E
Length = 815
Score = 41.2 bits (95), Expect(2) = 2e-07
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVH+S +A+R
Sbjct: 647 GMILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANR 682
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + ++VV+ G VTVKV+ VD E+KR+ L L+
Sbjct: 683 FVSDPREVVKSGDIVTVKVMEVDVERKRIGLSLR 716
[164][TOP]
>UniRef100_C6NZN2 RNA binding S1 domain protein n=1 Tax=Sideroxydans lithotrophicus
ES-1 RepID=C6NZN2_9GAMM
Length = 801
Score = 41.6 bits (96), Expect(2) = 2e-07
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVHIS LA +
Sbjct: 679 GMILEGVVTNVAAFGAFVDIGVHQDGLVHISALADK 714
Score = 37.0 bits (84), Expect(2) = 2e-07
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ VV+ GQ V VKVL VD ++KRVSL ++
Sbjct: 715 FVKDPHSVVKAGQIVKVKVLEVDVKRKRVSLTMR 748
[165][TOP]
>UniRef100_Q82SV2 S1 RNA binding domain n=1 Tax=Nitrosomonas europaea
RepID=Q82SV2_NITEU
Length = 801
Score = 41.2 bits (95), Expect(2) = 2e-07
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAF++ G + +GLVH+S LA++
Sbjct: 676 GMILEGVVTNVAAFGAFIDIGVHQDGLVHVSALANK 711
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +V+PGQ V V+VL+VDA ++R+SL ++
Sbjct: 712 FIKDPHQIVKPGQVVKVRVLTVDAVRQRISLTMR 745
[166][TOP]
>UniRef100_C5CMY3 RNA binding S1 domain protein n=1 Tax=Variovorax paradoxus S110
RepID=C5CMY3_VARPS
Length = 791
Score = 43.5 bits (101), Expect(2) = 2e-07
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG EGTV+ V +FGAF++ G + +GLVH+S+L+ +
Sbjct: 670 EGMILEGTVSNVAQFGAFIDLGVHQDGLVHVSQLSHK 706
Score = 35.0 bits (79), Expect(2) = 2e-07
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F +A++VV+ G V VKV+ VD +KR+ L +K
Sbjct: 707 FVNDAREVVKTGDIVKVKVMEVDVARKRIGLSMK 740
[167][TOP]
>UniRef100_B4X3W4 S1 RNA binding domain protein n=1 Tax=Alcanivorax sp. DG881
RepID=B4X3W4_9GAMM
Length = 791
Score = 43.1 bits (100), Expect(2) = 2e-07
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EGTVT V FGAFV+ G + +GLVH+S LA +
Sbjct: 654 EGTVTNVTNFGAFVDIGVHQDGLVHVSALADK 685
Score = 35.4 bits (80), Expect(2) = 2e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++ VV PG V VKVL VD ++KR+SL ++
Sbjct: 686 FVEDPHQVVAPGDIVKVKVLDVDLDRKRISLTMR 719
[168][TOP]
>UniRef100_Q2W1Q4 TEX protein n=1 Tax=Magnetospirillum magneticum AMB-1
RepID=Q2W1Q4_MAGSA
Length = 787
Score = 42.7 bits (99), Expect(2) = 2e-07
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVHIS LA R
Sbjct: 665 GMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADR 700
Score = 35.8 bits (81), Expect(2) = 2e-07
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV+PG V VKVL VD ++ R++L ++
Sbjct: 701 FVKDPHEVVKPGDLVKVKVLEVDIKRSRIALSMR 734
[169][TOP]
>UniRef100_B5JN15 S1 RNA binding domain protein n=1 Tax=Verrucomicrobiae bacterium
DG1235 RepID=B5JN15_9BACT
Length = 779
Score = 40.0 bits (92), Expect(2) = 2e-07
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
+EG + G VT V FGAF++ G + +GL HIS+L+
Sbjct: 640 TEGMKLTGVVTNVTAFGAFIDIGVHQDGLAHISQLS 675
Score = 38.5 bits (88), Expect(2) = 2e-07
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
F K+ +VV+ GQKV+ V VD +KR+ L LKS V
Sbjct: 678 FVKDPNEVVKVGQKVSATVTEVDVARKRIGLSLKSVV 714
[170][TOP]
>UniRef100_B8IV07 RNA binding S1 domain protein n=1 Tax=Methylobacterium nodulans ORS
2060 RepID=B8IV07_METNO
Length = 769
Score = 39.7 bits (91), Expect(2) = 2e-07
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
G EG VT V FGAFV+ G + +GLVHIS L++
Sbjct: 651 GMLLEGVVTNVAAFGAFVDVGVHQDGLVHISALSN 685
Score = 38.9 bits (89), Expect(2) = 2e-07
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++VV+PG V VKVL VD +KR+SL ++
Sbjct: 687 FVKDPRNVVKPGDVVKVKVLDVDVPRKRISLTMR 720
[171][TOP]
>UniRef100_A7Z1N2 YdcI n=1 Tax=Bacillus amyloliquefaciens FZB42 RepID=A7Z1N2_BACA2
Length = 719
Score = 47.4 bits (111), Expect(2) = 2e-07
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L EG E +GTV V +FGAFV+ G +GLVHISKL+++
Sbjct: 632 PKPLLKKDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQ 684
Score = 31.2 bits (69), Expect(2) = 2e-07
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F K+ DVV G VTV V VD +K RVSL +
Sbjct: 685 FVKHPLDVVSVGDIVTVWVEGVDVQKGRVSLSM 717
[172][TOP]
>UniRef100_B1ZSU7 RNA binding S1 domain protein n=1 Tax=Opitutus terrae PB90-1
RepID=B1ZSU7_OPITP
Length = 794
Score = 40.4 bits (93), Expect(2) = 2e-07
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G + G VT V FGAFV+ G + +GLVHIS+LA
Sbjct: 665 GMKLPGIVTNVTAFGAFVDIGVHQDGLVHISQLA 698
Score = 37.7 bits (86), Expect(2) = 2e-07
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
F K+A VV+P QKVTV V+ VD + R++L ++S
Sbjct: 701 FVKDAATVVKPQQKVTVTVVEVDLARNRIALSMRS 735
[173][TOP]
>UniRef100_A2SGR2 Putative transcription accessory protein n=1 Tax=Methylibium
petroleiphilum PM1 RepID=A2SGR2_METPP
Length = 793
Score = 44.7 bits (104), Expect(2) = 2e-07
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTV+ V +FGAFV+ G + +GLVH+S+LA++
Sbjct: 666 GMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLANK 701
Score = 33.5 bits (75), Expect(2) = 2e-07
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F +A+++V+ G V VKVL VD + R+SL +K
Sbjct: 702 FVNDAREIVKTGDIVKVKVLEVDLARGRISLTMK 735
[174][TOP]
>UniRef100_Q0VSY6 S1 RNA binding domain protein n=1 Tax=Alcanivorax borkumensis SK2
RepID=Q0VSY6_ALCBS
Length = 790
Score = 42.7 bits (99), Expect(2) = 2e-07
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EGTVT V FGAFV+ G + +GLVH+S LA +
Sbjct: 654 EGTVTNVTNFGAFVDVGVHQDGLVHVSALADK 685
Score = 35.4 bits (80), Expect(2) = 2e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++ VV PG V VKVL VD ++KR+SL ++
Sbjct: 686 FVEDPHQVVAPGDIVKVKVLDVDLDRKRISLTMR 719
[175][TOP]
>UniRef100_Q21CQ2 RNA binding S1 n=1 Tax=Rhodopseudomonas palustris BisB18
RepID=Q21CQ2_RHOPB
Length = 782
Score = 39.7 bits (91), Expect(2) = 2e-07
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Frame = +2
Query: 110 GLRSVCSLRRPL--PSRPPR-----------LLSWRT*SEGSEYEGTVTTVEEFGAFVNF 250
GL +V + R L P R PR + + + G EG VT V FGAFV+
Sbjct: 613 GLPTVTDILRELEKPGRDPRPAFKAAVFMEGVETLKDLKPGMVLEGAVTNVAAFGAFVDI 672
Query: 251 GANTNGLVHISKLA 292
G + +GLVHIS ++
Sbjct: 673 GVHQDGLVHISAMS 686
Score = 38.5 bits (88), Expect(2) = 2e-07
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++VV+PG V VKVL VD +KR++L L+
Sbjct: 689 FIKDPREVVKPGDIVKVKVLEVDVARKRIALSLR 722
[176][TOP]
>UniRef100_C5S7F4 RNA binding S1 domain protein n=1 Tax=Allochromatium vinosum DSM
180 RepID=C5S7F4_CHRVI
Length = 781
Score = 43.5 bits (101), Expect(2) = 2e-07
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVHIS L+ R
Sbjct: 648 GMILEGTVTNVTNFGAFVDIGVHQDGLVHISVLSDR 683
Score = 34.7 bits (78), Expect(2) = 2e-07
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSL 392
F K+ +VV+ G V VKVL VD E+KR++L
Sbjct: 684 FVKDPHEVVKSGDLVKVKVLEVDLERKRIAL 714
[177][TOP]
>UniRef100_B5KA30 RNA binding S1 domain protein n=1 Tax=Octadecabacter antarcticus
238 RepID=B5KA30_9RHOB
Length = 773
Score = 46.2 bits (108), Expect(2) = 2e-07
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 650 GMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 685
Score = 32.0 bits (71), Expect(2) = 2e-07
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ D+V+ G V V+V +D +KR++L ++
Sbjct: 686 FVKDPHDIVKAGDVVRVRVTEIDVPRKRIALSMR 719
[178][TOP]
>UniRef100_C4GES0 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147
RepID=C4GES0_9NEIS
Length = 765
Score = 43.1 bits (100), Expect(2) = 2e-07
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASRVHQE 310
G EG V+ V FGAFV+ G + +GLVHIS LA R Q+
Sbjct: 638 GMVLEGVVSNVANFGAFVDIGVHQDGLVHISALADRFVQD 677
Score = 35.0 bits (79), Expect(2) = 2e-07
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++ +DVV+ G V VKVL VD +KR++L ++
Sbjct: 674 FVQDPRDVVKAGDVVKVKVLEVDVPRKRIALTMR 707
[179][TOP]
>UniRef100_UPI0001AF4EAF transcriptional accessory protein Tex n=1 Tax=Mycobacterium
kansasii ATCC 12478 RepID=UPI0001AF4EAF
Length = 753
Score = 42.0 bits (97), Expect(2) = 2e-07
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVH+S +A R
Sbjct: 637 GMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMAER 672
Score = 36.2 bits (82), Expect(2) = 2e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + DVV+ GQ V VKV+ VD E++R+ L L+
Sbjct: 673 FVADPHDVVRSGQVVRVKVIDVDVERRRIGLSLR 706
[180][TOP]
>UniRef100_Q65N46 Putative RNA binding protein containing S1 RNA binding domain,YdcI
n=1 Tax=Bacillus licheniformis ATCC 14580
RepID=Q65N46_BACLD
Length = 720
Score = 46.6 bits (109), Expect(2) = 2e-07
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
P P +L EG E +GTV V +FGAFV+ G +GLVHISKL+
Sbjct: 631 PKPLLKTDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLS 681
Score = 31.6 bits (70), Expect(2) = 2e-07
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F K+ DVV G VTV V VDA K RVSL +
Sbjct: 684 FVKHPLDVVSVGDIVTVWVEDVDAAKGRVSLSM 716
[181][TOP]
>UniRef100_O31489 Uncharacterized protein ydcI n=1 Tax=Bacillus subtilis
RepID=YDCI_BACSU
Length = 719
Score = 47.4 bits (111), Expect(2) = 2e-07
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L EG E +GTV V +FGAFV+ G +GLVHISKL+++
Sbjct: 632 PKPLLKTDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQ 684
Score = 30.8 bits (68), Expect(2) = 2e-07
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F K+ DVV G VTV V VD +K RVSL +
Sbjct: 685 FVKHPLDVVSVGDIVTVWVDGVDVQKGRVSLSM 717
[182][TOP]
>UniRef100_A8MJM7 RNA binding S1 domain protein n=1 Tax=Alkaliphilus oremlandii
OhILAs RepID=A8MJM7_ALKOO
Length = 718
Score = 40.0 bits (92), Expect(2) = 2e-07
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +2
Query: 206 GTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
GTV V +FGAFV+ G +GLVH+S+L++R
Sbjct: 651 GTVRNVVDFGAFVDIGVKQDGLVHVSELSNR 681
Score = 38.1 bits (87), Expect(2) = 2e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F KNA DVV G +V VK++ +D E+ ++SL +K
Sbjct: 682 FVKNAMDVVSVGDEVKVKIIGLDIERGKISLSIK 715
[183][TOP]
>UniRef100_UPI0001906521 RNA binding S1 domain protein n=1 Tax=Rhizobium etli Kim 5
RepID=UPI0001906521
Length = 717
Score = 45.4 bits (106), Expect(2) = 2e-07
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S+LA R
Sbjct: 650 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADR 685
Score = 32.7 bits (73), Expect(2) = 2e-07
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSL 392
F K+ +VV+ G V V+V+ VDA++KR++L
Sbjct: 686 FVKDPHEVVKAGDVVKVRVVEVDAKRKRIAL 716
[184][TOP]
>UniRef100_Q64VC5 Putative RNA binding protein with S1 RNA-binding domain n=1
Tax=Bacteroides fragilis RepID=Q64VC5_BACFR
Length = 707
Score = 42.7 bits (99), Expect(2) = 2e-07
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG G V+ + FGAFV+ G NGLVH+S+LA+R
Sbjct: 635 EGMTLPGIVSNITNFGAFVDIGIKENGLVHLSQLANR 671
Score = 35.4 bits (80), Expect(2) = 2e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + +VV Q VTVKVLS+D E+KR+ L +K
Sbjct: 672 FITDPTEVVSIHQHVTVKVLSIDLERKRIQLTMK 705
[185][TOP]
>UniRef100_Q5LE82 Putative RNA-binding protein n=1 Tax=Bacteroides fragilis NCTC 9343
RepID=Q5LE82_BACFN
Length = 707
Score = 42.7 bits (99), Expect(2) = 2e-07
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG G V+ + FGAFV+ G NGLVH+S+LA+R
Sbjct: 635 EGMTLPGIVSNITNFGAFVDIGIKENGLVHLSQLANR 671
Score = 35.4 bits (80), Expect(2) = 2e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + +VV Q VTVKVLS+D E+KR+ L +K
Sbjct: 672 FITDPTEVVSIHQHVTVKVLSIDLERKRIQLTMK 705
[186][TOP]
>UniRef100_C6IBW1 RNA-binding protein n=1 Tax=Bacteroides sp. 3_2_5
RepID=C6IBW1_9BACE
Length = 707
Score = 42.7 bits (99), Expect(2) = 2e-07
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG G V+ + FGAFV+ G NGLVH+S+LA+R
Sbjct: 635 EGMTLPGIVSNITNFGAFVDIGIKENGLVHLSQLANR 671
Score = 35.4 bits (80), Expect(2) = 2e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + +VV Q VTVKVLS+D E+KR+ L +K
Sbjct: 672 FITDPTEVVSIHQHVTVKVLSIDLERKRIQLTMK 705
[187][TOP]
>UniRef100_C4EGE5 Transcriptional accessory protein n=1 Tax=Streptosporangium roseum
DSM 43021 RepID=C4EGE5_STRRS
Length = 797
Score = 39.3 bits (90), Expect(2) = 2e-07
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++VV+PG V VKVL VD +KR+SL L+
Sbjct: 679 FVKDPREVVKPGDIVRVKVLDVDIPRKRISLTLR 712
Score = 38.9 bits (89), Expect(2) = 2e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EG VT V FGAFV+ G + +GLVH+S L+
Sbjct: 643 GMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSALS 676
[188][TOP]
>UniRef100_C9Z848 Putative transcriptional accessory protein n=1 Tax=Streptomyces
scabiei 87.22 RepID=C9Z848_STRSC
Length = 794
Score = 40.8 bits (94), Expect(2) = 2e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+PG V VKVL VD +KR+SL L+
Sbjct: 694 FVKDPRDVVKPGDIVKVKVLDVDIPRKRISLTLR 727
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EG VT V FGAF++ G + +GL H+S L+
Sbjct: 658 GMVLEGVVTNVAAFGAFIDVGVHQDGLAHVSALS 691
[189][TOP]
>UniRef100_C3B1G6 30S ribosomal protein S1 n=1 Tax=Bacillus mycoides Rock3-17
RepID=C3B1G6_BACMY
Length = 382
Score = 39.7 bits (91), Expect(2) = 2e-07
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G + +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-DVDGLVHISQISHDRVEQ 227
Score = 38.5 bits (88), Expect(2) = 2e-07
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
DV+ GQ V VKVLSVDA+ +R+SL +K+A
Sbjct: 230 DVLTQGQSVKVKVLSVDADTQRISLSIKAA 259
Score = 40.0 bits (92), Expect(2) = 4e-06
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +3
Query: 306 KNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
KN +V++ GQ+V VKVL V A +KR+SL +K AV
Sbjct: 312 KNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAV 346
Score = 33.9 bits (76), Expect(2) = 4e-06
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG V + FGAFV GLVH+S++A+R
Sbjct: 274 GDIREGIVKRIVTFGAFVEILPGVEGLVHVSQIANR 309
[190][TOP]
>UniRef100_C6QQG6 RNA binding S1 domain protein n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QQG6_9BACI
Length = 121
Score = 43.1 bits (100), Expect(2) = 3e-07
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
GF KN KD V G ++TVKVLS+D KR SL +++
Sbjct: 42 GFVKNIKDYVNVGDEITVKVLSIDPHTKRASLSMRA 77
Score = 35.0 bits (79), Expect(2) = 3e-07
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
GS +G VT ++ +G FV T GLVHIS+++
Sbjct: 7 GSIVKGKVTGIQPYGVFVELDRETQGLVHISEIS 40
[191][TOP]
>UniRef100_A5WHC1 RNA binding S1 domain protein n=1 Tax=Psychrobacter sp. PRwf-1
RepID=A5WHC1_PSYWF
Length = 849
Score = 42.7 bits (99), Expect(2) = 3e-07
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
EG + EG VT V FG FV+ G + +GLVHIS++A+
Sbjct: 696 EGMQLEGVVTNVTGFGCFVDVGVHQDGLVHISEMAN 731
Score = 35.0 bits (79), Expect(2) = 3e-07
Identities = 13/35 (37%), Positives = 26/35 (74%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
F ++ ++V+PG V+V+V+S+DA++ R+ +KS
Sbjct: 733 FVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKS 767
[192][TOP]
>UniRef100_UPI000185BF30 transcriptional accessory protein n=1 Tax=Corynebacterium
amycolatum SK46 RepID=UPI000185BF30
Length = 763
Score = 41.6 bits (96), Expect(2) = 3e-07
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EGTVT V FGAFV+ G + +GLVH+S +A
Sbjct: 648 GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSNMA 681
Score = 36.2 bits (82), Expect(2) = 3e-07
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
GF + +VV+ G+ V VKVL VD E+ R+ L L+
Sbjct: 683 GFVSDPHEVVRSGEVVKVKVLDVDVERNRIGLSLR 717
[193][TOP]
>UniRef100_C4LJC0 Putative transcriptional accessory protein n=1 Tax=Corynebacterium
kroppenstedtii DSM 44385 RepID=C4LJC0_CORK4
Length = 750
Score = 42.7 bits (99), Expect(2) = 3e-07
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAFV+ G + +GLVH+S ++ R
Sbjct: 607 GMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSDR 642
Score = 35.0 bits (79), Expect(2) = 3e-07
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + DVV+ GQ V VKV+ VD +++R+ L L+
Sbjct: 643 FVSDPHDVVKSGQVVRVKVMDVDTDRQRIGLSLR 676
[194][TOP]
>UniRef100_C6J5S2 RNA binding S1 domain-containing protein n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6J5S2_9BACL
Length = 743
Score = 42.4 bits (98), Expect(2) = 3e-07
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
G E +GTV V +FGAFV+ G +GLVHIS+L++
Sbjct: 667 GMELQGTVRNVIDFGAFVDIGIKNDGLVHISQLSN 701
Score = 35.4 bits (80), Expect(2) = 3e-07
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
G+ K+ DVV G VTV VL+VD +K RV L ++
Sbjct: 702 GYVKHPMDVVSVGDNVTVWVLNVDVKKGRVGLTMR 736
[195][TOP]
>UniRef100_B9DMI2 Putative uncharacterized protein n=1 Tax=Staphylococcus carnosus
subsp. carnosus TM300 RepID=B9DMI2_STACT
Length = 716
Score = 43.5 bits (101), Expect(2) = 3e-07
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Frame = +2
Query: 146 PSRPPR-----------LLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
P+R PR +LS ++G + GTV V +FGAFV+ G +GLVH+S+L+
Sbjct: 617 PNRDPRDEYETPILKSNVLSIEDLTKGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSQLS 676
Query: 293 SR 298
R
Sbjct: 677 KR 678
Score = 34.3 bits (77), Expect(2) = 3e-07
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F KN D+V G V V VLS DA+K +VSL +
Sbjct: 679 FVKNPMDIVNVGDIVDVWVLSADAQKNKVSLTM 711
[196][TOP]
>UniRef100_C7IPQ4 RNA binding S1 domain protein n=1 Tax=Thermoanaerobacter
ethanolicus CCSD1 RepID=C7IPQ4_THEET
Length = 712
Score = 41.6 bits (96), Expect(2) = 3e-07
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G E GTV V +FG FV+ G +T+GLVHIS+++
Sbjct: 643 GMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMS 676
Score = 36.2 bits (82), Expect(2) = 3e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
+ K+ DVV G V VKVLSVD E+ R+SL +K
Sbjct: 679 YIKHPLDVVAVGDIVKVKVLSVDIERNRISLSMK 712
[197][TOP]
>UniRef100_C6PFK5 RNA binding S1 domain protein n=1 Tax=Thermoanaerobacter italicus
Ab9 RepID=C6PFK5_9THEO
Length = 712
Score = 41.6 bits (96), Expect(2) = 3e-07
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G E GTV V +FG FV+ G +T+GLVHIS+++
Sbjct: 643 GMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMS 676
Score = 36.2 bits (82), Expect(2) = 3e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
+ K+ DVV G V VKVLSVD E+ R+SL +K
Sbjct: 679 YIKHPLDVVAVGDIVKVKVLSVDLERNRISLSMK 712
[198][TOP]
>UniRef100_A9WBG5 RNA binding S1 domain protein n=2 Tax=Chloroflexus
RepID=A9WBG5_CHLAA
Length = 520
Score = 42.0 bits (97), Expect(2) = 3e-07
Identities = 27/55 (49%), Positives = 32/55 (58%)
Frame = +2
Query: 128 SLRRPLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
SLRR L R R+ T G EGTV+ + FGAFV+ G +GLVHIS LA
Sbjct: 277 SLRRAL--RTQRMQQLET---GQILEGTVSGIAPFGAFVDIGVGRDGLVHISALA 326
Score = 35.8 bits (81), Expect(2) = 3e-07
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 306 KNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
+ +DVV+ G KV VKVL VD + KR+SL ++
Sbjct: 331 EKVEDVVKVGDKVKVKVLGVDQQSKRISLTMR 362
[199][TOP]
>UniRef100_C7N7X7 SSU ribosomal protein S1P n=1 Tax=Slackia heliotrinireducens DSM
20476 RepID=C7N7X7_SLAHD
Length = 407
Score = 42.4 bits (98), Expect(2) = 3e-07
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
GS +G VT + FGAFV G N GLVHIS++A R
Sbjct: 292 GSIIDGKVTKIVPFGAFVELGNNVEGLVHISEMAPR 327
Score = 35.4 bits (80), Expect(2) = 3e-07
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +3
Query: 321 VVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
VV+ GQ V VKV+ V+ E++R+SL +K+A A
Sbjct: 335 VVKVGQDVKVKVMEVNPERRRISLSMKAAAA 365
[200][TOP]
>UniRef100_C2W617 30S ribosomal protein S1 n=1 Tax=Bacillus cereus Rock3-44
RepID=C2W617_BACCE
Length = 382
Score = 39.3 bits (90), Expect(2) = 3e-07
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA-SRVHQ 307
EG EGTV + +FGAFVN G +GLVHIS+++ RV Q
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHDRVEQ 227
Score = 38.5 bits (88), Expect(2) = 3e-07
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
DV+ GQ V VKVLSVDA+ +R+SL +K+A
Sbjct: 230 DVLTQGQSVKVKVLSVDADTQRISLSIKAA 259
Score = 39.7 bits (91), Expect(2) = 6e-06
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +3
Query: 306 KNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
KN +V++ GQ+V VKVL V A +KR+SL +K A+
Sbjct: 312 KNPNEVLEMGQEVKVKVLEVHAAEKRISLSIKEAI 346
Score = 33.9 bits (76), Expect(2) = 6e-06
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG V + FGAFV GLVH+S++A+R
Sbjct: 274 GDIREGLVKRIVTFGAFVEILPGVEGLVHVSQIANR 309
[201][TOP]
>UniRef100_A0KF15 S1 RNA binding domain protein n=1 Tax=Aeromonas hydrophila subsp.
hydrophila ATCC 7966 RepID=A0KF15_AERHH
Length = 834
Score = 41.6 bits (96), Expect(2) = 4e-07
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +2
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG VT V FGAFV+ G + +GLVHIS L R
Sbjct: 719 EGVVTNVTNFGAFVDIGVHQDGLVHISSLTDR 750
Score = 35.8 bits (81), Expect(2) = 4e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++VV+ G V VKVL VD +KR+SL ++
Sbjct: 751 FVKDPREVVKAGDIVRVKVLEVDVPRKRISLTMR 784
[202][TOP]
>UniRef100_C1A3I1 Transcription accessory protein n=1 Tax=Gemmatimonas aurantiaca
T-27 RepID=C1A3I1_GEMAT
Length = 791
Score = 41.6 bits (96), Expect(2) = 4e-07
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT + FGAFV+ G + +GLVH+S+L+ R
Sbjct: 652 GMVLEGVVTNIVAFGAFVDIGVHQDGLVHVSQLSDR 687
Score = 35.8 bits (81), Expect(2) = 4e-07
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
+ K+A DVV+ GQKV V V +VD + R++L ++S
Sbjct: 688 YIKDANDVVKVGQKVKVTVQNVDLPRNRIALSMRS 722
[203][TOP]
>UniRef100_Q2Y8N5 RNA binding S1 n=1 Tax=Nitrosospira multiformis ATCC 25196
RepID=Q2Y8N5_NITMU
Length = 790
Score = 41.6 bits (96), Expect(2) = 4e-07
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAFV+ G + +GLVHIS LA +
Sbjct: 669 GMLLEGVVTNVAAFGAFVDIGVHQDGLVHISALADK 704
Score = 35.8 bits (81), Expect(2) = 4e-07
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
F K+ VV+ GQ V VKVL VD ++KR++L ++ A A
Sbjct: 705 FVKDPHTVVKVGQVVKVKVLEVDEKRKRIALTMRLADA 742
[204][TOP]
>UniRef100_C6BIV7 RNA binding S1 domain protein n=1 Tax=Ralstonia pickettii 12D
RepID=C6BIV7_RALP1
Length = 788
Score = 42.4 bits (98), Expect(2) = 4e-07
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG VT V FGAF+N G + +GLVH+S L+++
Sbjct: 671 GMVLEGVVTNVAAFGAFINIGVHQDGLVHVSALSTK 706
Score = 35.0 bits (79), Expect(2) = 4e-07
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++ +VV+PGQ V VKV+ VD ++ R+ L ++
Sbjct: 707 FVRDPHEVVKPGQIVKVKVMEVDVKRNRIGLTMR 740
[205][TOP]
>UniRef100_A6EDY8 S1 RNA-binding domain protein n=1 Tax=Pedobacter sp. BAL39
RepID=A6EDY8_9SPHI
Length = 782
Score = 40.4 bits (93), Expect(2) = 4e-07
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G + G VT + FGAFV+ G + +GLVH S+LA R
Sbjct: 637 GMKLPGIVTNITNFGAFVDIGVHQDGLVHTSQLADR 672
Score = 37.0 bits (84), Expect(2) = 4e-07
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 413
F N DVV+ QKV V V+ VD +KR+SL +K+ A
Sbjct: 673 FVANPNDVVKVHQKVEVTVVEVDVARKRISLSMKTGKA 710
[206][TOP]
>UniRef100_B4RPU1 Putative uncharacterized protein n=1 Tax=Neisseria gonorrhoeae
NCCP11945 RepID=B4RPU1_NEIG2
Length = 757
Score = 40.8 bits (94), Expect(2) = 4e-07
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASRVHQE 310
G EG V+ V FGAFV+ G + +GLVHIS L+++ Q+
Sbjct: 640 GMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQD 679
Score = 36.6 bits (83), Expect(2) = 4e-07
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++ +DVV+ G V VKVL VDA +KR++L ++
Sbjct: 676 FVQDPRDVVKAGDVVKVKVLEVDAARKRIALTMR 709
[207][TOP]
>UniRef100_C6MGX2 RNA binding S1 domain protein n=1 Tax=Nitrosomonas sp. AL212
RepID=C6MGX2_9PROT
Length = 740
Score = 40.0 bits (92), Expect(2) = 4e-07
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 14/99 (14%)
Frame = +2
Query: 44 RSVLRPVRGAWLAGARWRSPVSGLRSVCSLRRPL--PSRPPRLLSWRT*S--EGSE---- 199
++VL+ + A A++ GL +V + + L P R PR ++RT + EG E
Sbjct: 606 QAVLKAIHPEQYANAQF-----GLLTVKDILKELEKPGRDPRS-TFRTAAFKEGIETIKD 659
Query: 200 ------YEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG +T V FGAFV+ G + +GLVHIS L+ +
Sbjct: 660 LRSDMILEGVITNVAAFGAFVDIGVHQDGLVHISALSDK 698
Score = 37.4 bits (85), Expect(2) = 4e-07
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F KN +V+ GQ VTVKVL +D ++KR++L ++
Sbjct: 699 FVKNPHAIVKVGQVVTVKVLDIDEKRKRIALTMQ 732
[208][TOP]
>UniRef100_C9AW24 RNA binding protein S1 n=2 Tax=Enterococcus casseliflavus
RepID=C9AW24_ENTCA
Length = 728
Score = 44.7 bits (104), Expect(2) = 4e-07
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
P P +LS G E +GTV V +FGAFV+ G +GLVH+SKL+
Sbjct: 636 PAPLLRKDVLSMEDLKPGMELKGTVRNVIDFGAFVDIGVKQDGLVHLSKLS 686
Score = 32.7 bits (73), Expect(2) = 4e-07
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F K+ KDVV G VTV + VD +K R+SL +
Sbjct: 689 FVKHPKDVVSVGDVVTVWIEQVDVKKGRISLTM 721
[209][TOP]
>UniRef100_C9A7Y3 RNA binding protein S1 n=1 Tax=Enterococcus casseliflavus EC20
RepID=C9A7Y3_ENTCA
Length = 728
Score = 44.7 bits (104), Expect(2) = 4e-07
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
P P +LS G E +GTV V +FGAFV+ G +GLVH+SKL+
Sbjct: 636 PAPLLRKDVLSMEDLKPGMELKGTVRNVIDFGAFVDIGVKQDGLVHLSKLS 686
Score = 32.7 bits (73), Expect(2) = 4e-07
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F K+ KDVV G VTV + VD +K R+SL +
Sbjct: 689 FVKHPKDVVSVGDVVTVWIEQVDVKKGRISLTM 721
[210][TOP]
>UniRef100_A8FA76 RNA binding transcriptional accessory protein n=1 Tax=Bacillus
pumilus SAFR-032 RepID=A8FA76_BACP2
Length = 719
Score = 47.8 bits (112), Expect(2) = 4e-07
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L +G E +GTV V +FGAFV+ G +GLVHISKL++R
Sbjct: 630 PKPLLKTDVLKLEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNR 682
Score = 29.6 bits (65), Expect(2) = 4e-07
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F K+ DVV G VTV V SVD K RV+L +
Sbjct: 683 FVKHPLDVVSVGDIVTVWVDSVDQAKGRVALSM 715
[211][TOP]
>UniRef100_B4AIJ4 Protein YhgF n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AIJ4_BACPU
Length = 719
Score = 47.8 bits (112), Expect(2) = 4e-07
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L +G E +GTV V +FGAFV+ G +GLVHISKL++R
Sbjct: 630 PKPLLKTDVLKLEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNR 682
Score = 29.6 bits (65), Expect(2) = 4e-07
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F K+ DVV G VTV V SVD K RV+L +
Sbjct: 683 FVKHPLDVVSVGDIVTVWVDSVDQAKGRVALSM 715
[212][TOP]
>UniRef100_B0G4P7 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G4P7_9FIRM
Length = 717
Score = 42.4 bits (98), Expect(2) = 4e-07
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L + EG +GTV V +FGAFV+ G + +GLVHIS++ ++
Sbjct: 628 PKPILRTDVLEMKDLKEGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMTNK 680
Score = 35.0 bits (79), Expect(2) = 4e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV G V VKV+SVD +KKR+ L +K
Sbjct: 682 FIKHPLEVVSVGDIVDVKVMSVDLKKKRIQLTMK 715
[213][TOP]
>UniRef100_A8SXA2 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC
27759 RepID=A8SXA2_9FIRM
Length = 715
Score = 42.7 bits (99), Expect(2) = 4e-07
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 11/62 (17%)
Frame = +2
Query: 146 PSRPPR-----------LLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
P+R PR +L + +EG +GTV V +FGAFV+ G + +GLVHIS+++
Sbjct: 617 PARDPRDEMPKPILRGDVLEMKDLTEGMILKGTVRNVIDFGAFVDIGVHQDGLVHISEMS 676
Query: 293 SR 298
++
Sbjct: 677 NK 678
Score = 34.7 bits (78), Expect(2) = 4e-07
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ DVV G V VKV+ +D KKR+ L +K
Sbjct: 679 FIKHPLDVVSVGDIVQVKVIGIDLNKKRIQLSMK 712
[214][TOP]
>UniRef100_C8WX93 RNA binding S1 domain protein n=1 Tax=Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446
RepID=C8WX93_ALIAC
Length = 385
Score = 44.7 bits (104), Expect(2) = 4e-07
Identities = 19/30 (63%), Positives = 27/30 (90%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
DV+QPGQ+VTV+VLSVD E+KR+SL ++ +
Sbjct: 317 DVLQPGQEVTVRVLSVDPERKRISLSMRDS 346
Score = 32.7 bits (73), Expect(2) = 4e-07
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
G +G V V +FGAFV GLVH+S++++
Sbjct: 275 GDVVQGVVRRVVDFGAFVELRPGLEGLVHVSQISN 309
[215][TOP]
>UniRef100_B7DUB2 RNA binding S1 domain protein n=1 Tax=Alicyclobacillus
acidocaldarius LAA1 RepID=B7DUB2_9BACL
Length = 385
Score = 44.7 bits (104), Expect(2) = 4e-07
Identities = 19/30 (63%), Positives = 27/30 (90%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
DV+QPGQ+VTV+VLSVD E+KR+SL ++ +
Sbjct: 317 DVLQPGQEVTVRVLSVDPERKRISLSMRDS 346
Score = 32.7 bits (73), Expect(2) = 4e-07
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
G +G V V +FGAFV GLVH+S++++
Sbjct: 275 GDVVQGVVRRVVDFGAFVELRPGLEGLVHVSQISN 309
[216][TOP]
>UniRef100_UPI00019DD834 SSU ribosomal protein S1P n=1 Tax=Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446 RepID=UPI00019DD834
Length = 302
Score = 44.7 bits (104), Expect(2) = 4e-07
Identities = 19/30 (63%), Positives = 27/30 (90%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSA 407
DV+QPGQ+VTV+VLSVD E+KR+SL ++ +
Sbjct: 234 DVLQPGQEVTVRVLSVDPERKRISLSMRDS 263
Score = 32.7 bits (73), Expect(2) = 4e-07
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
G +G V V +FGAFV GLVH+S++++
Sbjct: 192 GDVVQGVVRRVVDFGAFVELRPGLEGLVHVSQISN 226
[217][TOP]
>UniRef100_A9RZ32 Elongation factor Ts (Fragment) n=1 Tax=Physcomitrella patens
subsp. patens RepID=A9RZ32_PHYPA
Length = 854
Score = 42.4 bits (98), Expect(2) = 5e-07
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G+ + G V V+ +GAFV+ GA TNGLVH+S+LA
Sbjct: 36 GAVFTGRVRFVQPYGAFVDIGAFTNGLVHVSELA 69
Score = 34.7 bits (78), Expect(2) = 5e-07
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
G+ K+ D V+ GQ+VTV VL ++ + KR++L ++
Sbjct: 71 GYVKDVSDFVKVGQEVTVTVLEMNEKSKRIALTMR 105
[218][TOP]
>UniRef100_C0AEY5 RNA binding S1 domain protein (Fragment) n=1 Tax=Opitutaceae
bacterium TAV2 RepID=C0AEY5_9BACT
Length = 788
Score = 38.5 bits (88), Expect(2) = 5e-07
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G + G VT V FGAFV+ G + +GLVH+S+L+
Sbjct: 686 GMKLPGIVTNVTAFGAFVDVGVHQDGLVHVSQLS 719
Score = 38.5 bits (88), Expect(2) = 5e-07
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
F K+A +VV+PGQKV V+ VD + R++L L++
Sbjct: 722 FVKDASEVVKPGQKVRATVIEVDLARNRIALSLRT 756
[219][TOP]
>UniRef100_Q89E07 Bll7280 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89E07_BRAJA
Length = 786
Score = 41.2 bits (95), Expect(2) = 5e-07
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
+G EGTVT V FGAFV+ G + +GLVHIS ++
Sbjct: 658 KGMILEGTVTNVAAFGAFVDIGVHQDGLVHISAMS 692
Score = 35.8 bits (81), Expect(2) = 5e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++VV+PG V VKVL + +KR+SL L+
Sbjct: 695 FIKDPREVVKPGDIVKVKVLDFEVARKRISLTLR 728
[220][TOP]
>UniRef100_Q07UL0 RNA binding S1 domain protein n=1 Tax=Rhodopseudomonas palustris
BisA53 RepID=Q07UL0_RHOP5
Length = 784
Score = 38.9 bits (89), Expect(2) = 5e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EG VT V FGAFV+ G + +GLVHIS ++
Sbjct: 655 GMILEGAVTNVAAFGAFVDIGVHQDGLVHISAMS 688
Score = 38.1 bits (87), Expect(2) = 5e-07
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++VV+PG V VKVL VD +KR++L L+
Sbjct: 691 FIKDPREVVKPGDIVKVKVLEVDVARKRIALTLR 724
[221][TOP]
>UniRef100_B0UJU3 RNA binding S1 domain protein n=1 Tax=Methylobacterium sp. 4-46
RepID=B0UJU3_METS4
Length = 776
Score = 40.4 bits (93), Expect(2) = 5e-07
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 14/76 (18%)
Frame = +2
Query: 110 GLRSVCSLRRPL--PSRPPRLLSWRT*S--EGSE----------YEGTVTTVEEFGAFVN 247
GL +V + L P R PR S+RT S EG E EG VT V FGAFV+
Sbjct: 611 GLPTVTDILAELEKPGRDPRP-SFRTASFQEGVETIGDLKPGMLLEGVVTNVAAFGAFVD 669
Query: 248 FGANTNGLVHISKLAS 295
G + +GLVHIS L++
Sbjct: 670 VGVHQDGLVHISALSN 685
Score = 36.6 bits (83), Expect(2) = 5e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++ + VV+PG V VKVL VD +KR+SL ++
Sbjct: 687 FVRDPRAVVKPGDVVRVKVLDVDVPRKRISLTMR 720
[222][TOP]
>UniRef100_C1DZB9 Elongation factor Ts n=1 Tax=Micromonas sp. RCC299
RepID=C1DZB9_9CHLO
Length = 876
Score = 40.4 bits (93), Expect(2) = 5e-07
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
GF +N DVV Q VTV V S+DAEK R+SL +K
Sbjct: 179 GFVENVTDVVSADQAVTVWVKSIDAEKGRISLTMK 213
Score = 36.6 bits (83), Expect(2) = 5e-07
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +2
Query: 221 VEEFGAFVNFGANTNGLVHISKL 289
V+E+G FV+FGA +GLVHIS+L
Sbjct: 154 VQEYGCFVDFGAKNDGLVHISEL 176
[223][TOP]
>UniRef100_A8E1B7 Putative transcriptional accessory protein n=1 Tax=Neisseria canis
RepID=A8E1B7_9NEIS
Length = 762
Score = 42.0 bits (97), Expect(2) = 5e-07
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASRVHQE 310
G EG V+ V FGAFV+ G + +GLVHIS L++R Q+
Sbjct: 644 GMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNRFVQD 683
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++ ++VV+ G V VKVL VDA +KR++L ++
Sbjct: 680 FVQDPREVVKAGDVVKVKVLEVDAARKRIALTMR 713
[224][TOP]
>UniRef100_C6M3I9 Protein YhgF n=1 Tax=Neisseria sicca ATCC 29256 RepID=C6M3I9_NEISI
Length = 756
Score = 42.0 bits (97), Expect(2) = 5e-07
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASRVHQE 310
G EG V+ V FGAFV+ G + +GLVHIS L++R Q+
Sbjct: 640 GMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNRFVQD 679
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++ ++VV+ G V VKVL VDA +KR++L ++
Sbjct: 676 FVQDPREVVKAGDVVKVKVLEVDAARKRIALTMR 709
[225][TOP]
>UniRef100_Q1WSR3 Transcription accessory protein n=1 Tax=Lactobacillus salivarius
UCC118 RepID=Q1WSR3_LACS1
Length = 723
Score = 45.8 bits (107), Expect(2) = 5e-07
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P+P +L G + EGTV V +FGAFV+ G +GLVH+SKL+ +
Sbjct: 633 PMPLLKSDILKIEDLKAGMQLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKK 685
Score = 31.2 bits (69), Expect(2) = 5e-07
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
+ N +DVV GQ VTV V VD +KR+ L +
Sbjct: 686 YVSNPRDVVAVGQIVTVWVEDVDLNRKRIQLTM 718
[226][TOP]
>UniRef100_A6CTJ1 YdcI n=1 Tax=Bacillus sp. SG-1 RepID=A6CTJ1_9BACI
Length = 717
Score = 43.5 bits (101), Expect(2) = 5e-07
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 289
G E +GTV V +FGAFV+ G +GLVHISKL
Sbjct: 646 GMELQGTVRNVVDFGAFVDIGVKQDGLVHISKL 678
Score = 33.5 bits (75), Expect(2) = 5e-07
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +3
Query: 291 RLGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
R GF K+ DVV G VTV V S D +K RV+L +
Sbjct: 679 RKGFVKHPLDVVSVGDVVTVWVESADVKKGRVALSM 714
[227][TOP]
>UniRef100_B9AFT4 Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii
DSM 2375 RepID=B9AFT4_METSM
Length = 715
Score = 46.6 bits (109), Expect(2) = 5e-07
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +LS EG +GTV + +FGAFV+ G + +GLVHIS+LA R
Sbjct: 628 PKPVLRKNVLSIEDLEEGMIMQGTVRNIVDFGAFVDIGVHQDGLVHISQLADR 680
Score = 30.4 bits (67), Expect(2) = 5e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
F K+ D+V G V VKVL VD + R+ L +
Sbjct: 681 FVKHPLDIVSVGDIVDVKVLDVDLARNRIQLSM 713
[228][TOP]
>UniRef100_B0NX27 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1
RepID=B0NX27_9CLOT
Length = 713
Score = 43.9 bits (102), Expect(2) = 5e-07
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L + G + +GTV V +FGAFV+ G + +GLVHIS++A R
Sbjct: 626 PKPILRTDVLEMKDLKPGMKLKGTVRNVIDFGAFVDIGVHQDGLVHISQMADR 678
Score = 33.1 bits (74), Expect(2) = 5e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV G V V V+SVD +KKR+ L +K
Sbjct: 679 FIKHPLEVVSVGDVVDVVVVSVDIDKKRIQLSMK 712
[229][TOP]
>UniRef100_B0KBU5 RNA binding S1 domain protein n=2 Tax=Thermoanaerobacter
RepID=B0KBU5_THEP3
Length = 712
Score = 41.6 bits (96), Expect(2) = 5e-07
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G E GTV V +FG FV+ G +T+GLVHIS+++
Sbjct: 643 GMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMS 676
Score = 35.4 bits (80), Expect(2) = 5e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
+ K+ DVV G V V+VLSVD E+ R+SL +K
Sbjct: 679 YIKHPLDVVSVGDIVKVRVLSVDIERNRISLSMK 712
[230][TOP]
>UniRef100_B0K3L4 RNA binding S1 domain protein n=3 Tax=Thermoanaerobacter
RepID=B0K3L4_THEPX
Length = 712
Score = 41.6 bits (96), Expect(2) = 5e-07
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G E GTV V +FG FV+ G +T+GLVHIS+++
Sbjct: 643 GMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMS 676
Score = 35.4 bits (80), Expect(2) = 5e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
+ K+ DVV G V V+VLSVD E+ R+SL +K
Sbjct: 679 YIKHPLDVVSVGDIVKVRVLSVDIERNRISLSMK 712
[231][TOP]
>UniRef100_A6DLA1 RNA binding domain protein, S1 n=1 Tax=Lentisphaera araneosa
HTCC2155 RepID=A6DLA1_9BACT
Length = 705
Score = 40.4 bits (93), Expect(2) = 5e-07
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 289
G + G VT V +FGAFV+ G + +GL+HISKL
Sbjct: 635 GMKVPGLVTNVTKFGAFVDVGVHQDGLIHISKL 667
Score = 36.6 bits (83), Expect(2) = 5e-07
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 297 GFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
GF + +VV+ Q+V VKV+ VDA++KR+SL L
Sbjct: 670 GFVADPAEVVRVRQQVEVKVIEVDAKRKRISLSL 703
[232][TOP]
>UniRef100_UPI0001968DE8 hypothetical protein BACCELL_04149 n=1 Tax=Bacteroides
cellulosilyticus DSM 14838 RepID=UPI0001968DE8
Length = 519
Score = 43.1 bits (100), Expect(2) = 5e-07
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG E G V + FGAFV+ G NGL+H+S+LA R
Sbjct: 445 EGMELPGIVGNITNFGAFVDIGIKENGLIHLSQLADR 481
Score = 33.9 bits (76), Expect(2) = 5e-07
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
F + ++V Q V VKVLSVD ++KR++L+L S
Sbjct: 482 FVSDPNEIVSIHQHVRVKVLSVDMDRKRIALKLVS 516
[233][TOP]
>UniRef100_B9DNW0 Putative 30S ribosomal protein S1 n=1 Tax=Staphylococcus carnosus
subsp. carnosus TM300 RepID=B9DNW0_STACT
Length = 392
Score = 41.2 bits (95), Expect(2) = 5e-07
Identities = 17/31 (54%), Positives = 27/31 (87%)
Frame = +3
Query: 318 DVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 410
+V++P Q+VTVKVLS+D E +R+SL +K+A+
Sbjct: 321 EVLEPNQEVTVKVLSIDEESERISLSIKAAL 351
Score = 35.8 bits (81), Expect(2) = 5e-07
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 203 EGTVTTVEEFGAFVNFGANTNGLVHISKLASRVH 304
EG V + +FGAFV A GLVHIS++ SR H
Sbjct: 283 EGRVVRLTDFGAFVEIAAGVQGLVHISEI-SRKH 315
[234][TOP]
>UniRef100_A3JE68 General secretion pathway protein J n=1 Tax=Marinobacter sp. ELB17
RepID=A3JE68_9ALTE
Length = 304
Score = 43.9 bits (102), Expect(2) = 5e-07
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EG+VT V FGAFV+ G + +GLVHIS LA R
Sbjct: 166 GMVLEGSVTNVTNFGAFVDIGVHQDGLVHISALADR 201
Score = 33.1 bits (74), Expect(2) = 5e-07
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ ++VV+ G V VKV+ VD +KR++L ++
Sbjct: 202 FIKDPREVVKAGDIVKVKVMEVDIPRKRIALTMR 235
[235][TOP]
>UniRef100_Q0EXI2 Probable transcriptional accessory protein n=1 Tax=Mariprofundus
ferrooxydans PV-1 RepID=Q0EXI2_9PROT
Length = 825
Score = 41.6 bits (96), Expect(2) = 7e-07
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 289
EG EG VT V FGAFV+ G + +GLVHIS L
Sbjct: 663 EGMILEGVVTNVANFGAFVDIGVHQDGLVHISAL 696
Score = 35.0 bits (79), Expect(2) = 7e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + + VV+ G+ V VKVL VDA +KR+SL ++
Sbjct: 700 FIDDPRKVVKTGEVVQVKVLEVDARRKRISLTMR 733
[236][TOP]
>UniRef100_C1B2S2 Transcriptional accessory protein n=1 Tax=Rhodococcus opacus B4
RepID=C1B2S2_RHOOB
Length = 807
Score = 39.3 bits (90), Expect(2) = 7e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EG VT V FGAFV+ G + +GLVH+S ++
Sbjct: 640 GMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMS 673
Score = 37.4 bits (85), Expect(2) = 7e-07
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +DVV+ G VTVKVL VD ++R+ L L+
Sbjct: 676 FVKDPRDVVKSGDVVTVKVLEVDEARQRIGLTLR 709
[237][TOP]
>UniRef100_A6GN97 Transcription accessory protein, TEX n=1 Tax=Limnobacter sp. MED105
RepID=A6GN97_9BURK
Length = 787
Score = 40.8 bits (94), Expect(2) = 7e-07
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLAS 295
G EG VT V FGAFV+ G + +GLVH+S L++
Sbjct: 657 GMTLEGVVTNVANFGAFVDIGVHQDGLVHVSALSN 691
Score = 35.8 bits (81), Expect(2) = 7e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ VV+ GQ V VKVL VD +KR+SL +K
Sbjct: 693 FVKDPHAVVKTGQIVKVKVLEVDIPRKRISLTMK 726
[238][TOP]
>UniRef100_B3PDW6 S1 RNA binding domain protein n=1 Tax=Cellvibrio japonicus Ueda107
RepID=B3PDW6_CELJU
Length = 776
Score = 42.0 bits (97), Expect(2) = 7e-07
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EGTVT V FGAFV+ G + +GLVHIS L+
Sbjct: 655 GMILEGTVTNVTNFGAFVDIGVHQDGLVHISALS 688
Score = 34.7 bits (78), Expect(2) = 7e-07
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +D V+ G+ V VKV+ VD +KR++L ++
Sbjct: 691 FIKDPRDAVKAGEIVKVKVMEVDVPRKRIALSMR 724
[239][TOP]
>UniRef100_C8NPP7 Histidine triad domain-containing protein n=2 Tax=Corynebacterium
efficiens RepID=C8NPP7_COREF
Length = 775
Score = 42.0 bits (97), Expect(2) = 7e-07
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +2
Query: 185 SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
S G EGTVT V FGAFV+ G + +GLVH+S ++ +
Sbjct: 642 SPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSEK 679
Score = 34.7 bits (78), Expect(2) = 7e-07
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + +VV+ GQ V VKV+ VD ++KR+ L L+
Sbjct: 680 FISDPHEVVRSGQVVKVKVMEVDVDRKRIGLSLR 713
[240][TOP]
>UniRef100_A3WJ57 Transcriptional accessory protein n=1 Tax=Idiomarina baltica OS145
RepID=A3WJ57_9GAMM
Length = 768
Score = 42.0 bits (97), Expect(2) = 7e-07
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EG VT V FGAFV+ G + +GLVHIS LA
Sbjct: 650 GMTLEGVVTNVANFGAFVDIGVHQDGLVHISALA 683
Score = 34.7 bits (78), Expect(2) = 7e-07
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + +D+V+ G VTV+V+ VD ++KR+ L ++
Sbjct: 686 FVSDPRDIVKAGDIVTVRVVEVDIDRKRIGLSMR 719
[241][TOP]
>UniRef100_C7PIE5 RNA binding S1 domain protein n=1 Tax=Chitinophaga pinensis DSM
2588 RepID=C7PIE5_CHIPD
Length = 760
Score = 40.0 bits (92), Expect(2) = 7e-07
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G G VT + FGAFV+ G +GLVHIS L++R
Sbjct: 637 GMTLPGVVTNITNFGAFVDIGVKQDGLVHISHLSNR 672
Score = 36.6 bits (83), Expect(2) = 7e-07
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F N + V+ QKVTV VL VD +KR+SL +K
Sbjct: 673 FISNPNEAVKLNQKVTVTVLEVDPSRKRISLSMK 706
[242][TOP]
>UniRef100_C3PH70 Putative transcriptional accessory protein n=1 Tax=Corynebacterium
aurimucosum ATCC 700975 RepID=C3PH70_CORA7
Length = 759
Score = 40.4 bits (93), Expect(2) = 7e-07
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G EGTVT V FGAF++ G + +GLVH+S ++ +
Sbjct: 641 GMILEGTVTNVAAFGAFIDIGVHQDGLVHVSAMSHK 676
Score = 36.2 bits (82), Expect(2) = 7e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F + DVV+ GQ V VKV+ VD E++R+ L L+
Sbjct: 677 FVSDPHDVVRSGQVVKVKVMEVDVERQRIGLSLR 710
[243][TOP]
>UniRef100_C6D0I6 RNA binding S1 domain protein n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6D0I6_PAESJ
Length = 747
Score = 41.6 bits (96), Expect(2) = 7e-07
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G E +GTV V +FGAF++ G +GLVHIS+++ +
Sbjct: 675 GMELQGTVRNVIDFGAFIDIGIKNDGLVHISQMSDK 710
Score = 35.0 bits (79), Expect(2) = 7e-07
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ DVV G VTV VL VD +K RVSL ++
Sbjct: 711 FVKHPMDVVSVGDNVTVWVLGVDLKKGRVSLTMR 744
[244][TOP]
>UniRef100_B0TF28 Conserved domain protein n=1 Tax=Heliobacterium modesticaldum Ice1
RepID=B0TF28_HELMI
Length = 729
Score = 44.7 bits (104), Expect(2) = 7e-07
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +LS EG +GTV V +FGAFV+ G +GLVH+S+LA +
Sbjct: 636 PKPRFSSAVLSLDNLKEGMVLQGTVRNVVDFGAFVDIGIKHDGLVHVSQLADK 688
Score = 32.0 bits (71), Expect(2) = 7e-07
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F ++ +VV G VTV VLSVD +++RV L ++
Sbjct: 689 FVRHPMEVVAVGDIVTVAVLSVDRQRERVGLTMR 722
[245][TOP]
>UniRef100_A6TLF6 RNA binding S1 domain protein n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TLF6_ALKMQ
Length = 728
Score = 38.9 bits (89), Expect(2) = 7e-07
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +2
Query: 206 GTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
GTV V +FGAFV+ G +GLVH+S+L+++
Sbjct: 661 GTVRNVVDFGAFVDIGVKQDGLVHVSQLSNK 691
Score = 37.7 bits (86), Expect(2) = 7e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F KN DVV G +V VK++ +D E+ +VSL +K
Sbjct: 692 FVKNPMDVVSVGDEVEVKIIGIDVERGKVSLSMK 725
[246][TOP]
>UniRef100_C7QX45 RNA binding S1 domain protein n=2 Tax=Cyanothece RepID=C7QX45_CYAP0
Length = 719
Score = 40.8 bits (94), Expect(2) = 7e-07
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLA 292
G EG +T V FGAFV+ G + +GLVHIS+LA
Sbjct: 646 GMILEGIITNVVNFGAFVDIGVHQDGLVHISQLA 679
Score = 35.8 bits (81), Expect(2) = 7e-07
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ K+VV+ GQ V VKVL V+ + KR++L +K
Sbjct: 682 FIKDPKEVVKVGQVVKVKVLEVNEKLKRINLSMK 715
[247][TOP]
>UniRef100_Q1Q3A5 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1Q3A5_9BACT
Length = 718
Score = 39.3 bits (90), Expect(2) = 7e-07
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +2
Query: 191 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
G G VT + FGAFV+ G + +GLVHIS +A +
Sbjct: 640 GMTLPGIVTNITNFGAFVDIGVHQDGLVHISNMADK 675
Score = 37.4 bits (85), Expect(2) = 7e-07
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 404
+ KN DVV QKV V V+ VD +KR+SL +KS
Sbjct: 676 YVKNPADVVSVHQKVMVTVIEVDIGRKRISLSMKS 710
[248][TOP]
>UniRef100_C0CJW7 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
DSM 10507 RepID=C0CJW7_9FIRM
Length = 717
Score = 45.1 bits (105), Expect(2) = 7e-07
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L + EG +GTV V +FGAFV+ G + +GLVHISK+ R
Sbjct: 629 PRPILRTDVLEMKDLEEGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISKMTKR 681
Score = 31.6 bits (70), Expect(2) = 7e-07
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 398
+ K+ + V G V VKV+SVD +KKR+ L +
Sbjct: 682 YIKHPLEAVSVGDVVEVKVISVDLQKKRIGLSM 714
[249][TOP]
>UniRef100_B0NFA7 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC
35704 RepID=B0NFA7_EUBSP
Length = 717
Score = 40.8 bits (94), Expect(2) = 7e-07
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +2
Query: 140 PLPSRPPRLLSWRT*SEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
P P +L + +EG +GTV V +FG FV+ G + +GLVHIS++ +
Sbjct: 628 PKPILRTDVLEMKDLTEGMILKGTVRNVIDFGVFVDIGVHQDGLVHISEITDK 680
Score = 35.8 bits (81), Expect(2) = 7e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 401
F K+ +VV G V VKVLSVD +KKR+ L +K
Sbjct: 682 FIKHPLEVVSVGDIVDVKVLSVDLKKKRIQLTMK 715
[250][TOP]
>UniRef100_C0GIG1 RNA binding S1 domain protein n=1 Tax=Dethiobacter alkaliphilus AHT
1 RepID=C0GIG1_9FIRM
Length = 713
Score = 42.0 bits (97), Expect(2) = 7e-07
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +2
Query: 188 EGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASR 298
EG E G V V +FGAFV+ G + +GL+HIS+L+ +
Sbjct: 640 EGMELTGVVRNVVDFGAFVDIGVHQDGLIHISQLSDK 676
Score = 34.7 bits (78), Expect(2) = 7e-07
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 300 FTKNAKDVVQPGQKVTVKVLSVDAEKKRVSL 392
F K+ +VVQ G V VKV+S+D +KKR+ L
Sbjct: 677 FVKHPLEVVQVGDVVEVKVISLDVKKKRIGL 707