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[1][TOP] >UniRef100_Q5QEB2 Elongation factor Ts n=1 Tax=Chlamydomonas reinhardtii RepID=Q5QEB2_CHLRE Length = 1013 Score = 317 bits (812), Expect = 3e-85 Identities = 165/165 (100%), Positives = 165/165 (100%) Frame = +1 Query: 1 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 180 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG Sbjct: 5 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 64 Query: 181 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 360 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE Sbjct: 65 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 124 Query: 361 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 495 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE Sbjct: 125 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 169 [2][TOP] >UniRef100_Q5QEB1 Plastid-specific ribosomal protein-7 n=1 Tax=Chlamydomonas reinhardtii RepID=Q5QEB1_CHLRE Length = 560 Score = 317 bits (812), Expect = 3e-85 Identities = 165/165 (100%), Positives = 165/165 (100%) Frame = +1 Query: 1 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 180 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG Sbjct: 5 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 64 Query: 181 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 360 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE Sbjct: 65 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 124 Query: 361 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 495 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE Sbjct: 125 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 169 [3][TOP] >UniRef100_Q5QEB0 Chloroplast polyprotein of elongation factor Ts n=1 Tax=Chlamydomonas reinhardtii RepID=Q5QEB0_CHLRE Length = 603 Score = 317 bits (812), Expect = 3e-85 Identities = 165/165 (100%), Positives = 165/165 (100%) Frame = +1 Query: 1 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 180 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG Sbjct: 5 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 64 Query: 181 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 360 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE Sbjct: 65 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 124 Query: 361 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 495 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE Sbjct: 125 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 169 [4][TOP] >UniRef100_A8J641 Plastid-specific ribosomal protein 7 n=1 Tax=Chlamydomonas reinhardtii RepID=A8J641_CHLRE Length = 560 Score = 317 bits (812), Expect = 3e-85 Identities = 165/165 (100%), Positives = 165/165 (100%) Frame = +1 Query: 1 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 180 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG Sbjct: 5 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 64 Query: 181 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 360 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE Sbjct: 65 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 124 Query: 361 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 495 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE Sbjct: 125 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 169 [5][TOP] >UniRef100_A8J639 Polyprotein of PSRP-7 and EF-Ts, splice variant 2 n=1 Tax=Chlamydomonas reinhardtii RepID=A8J639_CHLRE Length = 603 Score = 317 bits (812), Expect = 3e-85 Identities = 165/165 (100%), Positives = 165/165 (100%) Frame = +1 Query: 1 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 180 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG Sbjct: 5 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 64 Query: 181 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 360 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE Sbjct: 65 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 124 Query: 361 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 495 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE Sbjct: 125 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 169 [6][TOP] >UniRef100_A8J637 Elongation factor Ts n=1 Tax=Chlamydomonas reinhardtii RepID=A8J637_CHLRE Length = 1013 Score = 317 bits (812), Expect = 3e-85 Identities = 165/165 (100%), Positives = 165/165 (100%) Frame = +1 Query: 1 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 180 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG Sbjct: 5 LGRTATVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEG 64 Query: 181 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 360 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE Sbjct: 65 SEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAE 124 Query: 361 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 495 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE Sbjct: 125 KKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVEVE 169 [7][TOP] >UniRef100_B8BU42 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BU42_THAPS Length = 398 Score = 88.6 bits (218), Expect = 2e-16 Identities = 43/110 (39%), Positives = 70/110 (63%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 L D++ G+ E TV T+ +GAF++ GA ++ LVH+S+L+ F N +DVV+ G+K+TV+ Sbjct: 138 LADLEIGASVEATVKTITAYGAFLDIGAKSDALVHVSRLSDDFVANVEDVVKAGEKITVR 197 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDVE 489 ++SVD EK ++++ ++S AEASA P R GAD T ++ Sbjct: 198 IVSVDTEKNQIAVTMRSE-EAEASAARPTKRRERPQRSGADQTSQAASIK 246 Score = 59.7 bits (143), Expect = 1e-07 Identities = 52/155 (33%), Positives = 71/155 (45%), Gaps = 24/155 (15%) Frame = +1 Query: 19 VKAHGRSVLRPVRGPAGRRQVAFT---------GVRPSVR----VFAEAPAAEQAA--KA 153 VKA + +R V + Q+A T RP+ R + A QAA KA Sbjct: 188 VKAGEKITVRIVSVDTEKNQIAVTMRSEEAEASAARPTKRRERPQRSGADQTSQAASIKA 247 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGA---------NTNGLVHISKLASGFTKNAKD 306 I + + +G V + FGAFV F + +GLVHIS LA G T N D Sbjct: 248 ISDKGFDDSKFIDGEVVSTLAFGAFVRFDSAQLGEGLEGEVDGLVHISALAEGRTANVSD 307 Query: 307 VVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEAS 411 V G KV+V+V SV+ E R+SL + + EA+ Sbjct: 308 VAAVGDKVSVRVRSVEPEAGRISLSMITKEQEEAA 342 [8][TOP] >UniRef100_C1N2E8 Elongation factor Ts n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N2E8_9CHLO Length = 844 Score = 87.4 bits (215), Expect = 4e-16 Identities = 54/134 (40%), Positives = 74/134 (55%), Gaps = 6/134 (4%) Frame = +1 Query: 70 RRQVAFTGVRPSVRVFAEAPAAEQAAKAIKL------EDVKEGSEYEGTVTTVEEFGAFV 231 RR VA V V E P + +K E V G+E++G V V+E+G FV Sbjct: 29 RRAVALRATVAEVEVSEEKPKPKGKKPFVKKNVTVTDEQVVVGAEFKGVVKRVQEYGCFV 88 Query: 232 NFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEAS 411 +FGA ++GLVHIS+L GF +N DVV Q+V V + S+DAEK R+SL +K +A Sbjct: 89 DFGAKSDGLVHISELKDGFVENVADVVSENQEVQVFIKSIDAEKGRISLTMKPPPSA--- 145 Query: 412 AEESDDIITEPDRE 453 AE + E +RE Sbjct: 146 AELETILAKEAERE 159 Score = 66.2 bits (160), Expect = 1e-09 Identities = 31/90 (34%), Positives = 57/90 (63%) Frame = +1 Query: 118 AEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 297 A+ A+E++ KA++ +K+G+ EG V +++ FGAFV GLVH+++++ + Sbjct: 167 AKKAASEESMKAVRA--IKKGTTVEGVVKSIQAFGAFVEIAEGVEGLVHVTEMSEDYNVK 224 Query: 298 AKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 +D V G+ V V+VL VD +K ++S++ K Sbjct: 225 PEDFVTVGETVKVRVLGVDGQKVKLSMKEK 254 [9][TOP] >UniRef100_A4A335 S1 RNA binding domain protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A335_9GAMM Length = 792 Score = 87.0 bits (214), Expect = 6e-16 Identities = 46/109 (42%), Positives = 67/109 (61%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E A+ A K+ D+K EGTVT V FGAFV+ G + +GLVHIS +A F K+ Sbjct: 632 EFKTAKLQAGVEKITDLKPDMVLEGTVTNVTSFGAFVDVGVHQDGLVHISAMAEKFVKDP 691 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPD 447 +DV + G VTVKV+S+D E+KRV L ++ + +AE S ++ + P+ Sbjct: 692 RDVAKAGDIVTVKVMSIDVERKRVGLSMRLSDSAEDSQQDPGQRRSRPE 740 [10][TOP] >UniRef100_Q2L128 Transcription accessory protein n=1 Tax=Bordetella avium 197N RepID=Q2L128_BORA1 Length = 790 Score = 85.9 bits (211), Expect = 1e-15 Identities = 66/175 (37%), Positives = 86/175 (49%), Gaps = 23/175 (13%) Frame = +1 Query: 13 ATVKAHGRSVLRPVRGPAGRRQVAFTGVR---PSVR-VFAEA------PAAEQAAKAIK- 159 A +KA R ++ G FT R P+VR +FAE P E K Sbjct: 600 ARIKADVRQIIGQREALKGVSPADFTDERFGLPTVRDIFAELEKPGRDPRPEFKTAQFKE 659 Query: 160 ----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQK 327 L+D+ G EG VT V FGAFV+ G + +GLVHIS LA F K+ +DVV+ GQ Sbjct: 660 GVETLKDLHPGMLLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQT 719 Query: 328 VTVKVLSVDAEKKRVSL--------ELKSAVAAEASAEESDDIITEPDREGADAT 468 VTVKVL VD ++KRV+L E + A A A E + + +GA T Sbjct: 720 VTVKVLEVDVQRKRVALTMRLNDNAEPRRAAPAAARGERAGGTPRRRNEDGARGT 774 [11][TOP] >UniRef100_A1APM8 RNA binding S1 domain protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APM8_PELPD Length = 723 Score = 85.9 bits (211), Expect = 1e-15 Identities = 42/79 (53%), Positives = 56/79 (70%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ED++EG +G VT V FGAFV+ G + +GLVHIS LA+ F K+ D VQ GQ V V Sbjct: 642 KIEDLREGMVLQGVVTNVTAFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQAGQLVRV 701 Query: 337 KVLSVDAEKKRVSLELKSA 393 KVLS D ++KR+SL ++ A Sbjct: 702 KVLSADPKRKRISLSIREA 720 [12][TOP] >UniRef100_A1VC50 RNA binding S1 domain protein n=1 Tax=Desulfovibrio vulgaris DP4 RepID=A1VC50_DESVV Length = 723 Score = 85.5 bits (210), Expect = 2e-15 Identities = 44/97 (45%), Positives = 64/97 (65%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP+ VFA A K++DV+ G E G VT V +FGAFV+ G + +GLVH+S+L Sbjct: 627 RPAFEVFAFAEGVN------KVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQL 680 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 A F ++ +VV PG+KV V+VL VD +++R++L LK Sbjct: 681 ADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTLK 717 [13][TOP] >UniRef100_Q729V2 S1 RNA binding domain protein n=2 Tax=Desulfovibrio vulgaris RepID=Q729V2_DESVH Length = 723 Score = 85.5 bits (210), Expect = 2e-15 Identities = 44/97 (45%), Positives = 64/97 (65%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP+ VFA A K++DV+ G E G VT V +FGAFV+ G + +GLVH+S+L Sbjct: 627 RPAFEVFAFAEGVN------KVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQL 680 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 A F ++ +VV PG+KV V+VL VD +++R++L LK Sbjct: 681 ADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTLK 717 [14][TOP] >UniRef100_Q92DB8 Lin0897 protein n=1 Tax=Listeria innocua RepID=Q92DB8_LISIN Length = 725 Score = 85.1 bits (209), Expect = 2e-15 Identities = 46/111 (41%), Positives = 64/111 (57%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 390 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +++ Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRN 719 [15][TOP] >UniRef100_A0AH17 Complete genome n=1 Tax=Listeria welshimeri serovar 6b str. SLCC5334 RepID=A0AH17_LISW6 Length = 725 Score = 85.1 bits (209), Expect = 2e-15 Identities = 46/111 (41%), Positives = 64/111 (57%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 390 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L +++ Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMRN 719 [16][TOP] >UniRef100_Q2BJK7 Conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJK7_9GAMM Length = 714 Score = 85.1 bits (209), Expect = 2e-15 Identities = 40/78 (51%), Positives = 58/78 (74%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 + D++ G EGT++ V FGAFV+ G + +GLVHIS+LA+ F K+ DVV PGQ VTV+ Sbjct: 636 ITDLQVGMRLEGTISNVTNFGAFVDLGVHQDGLVHISQLANKFVKDPHDVVSPGQIVTVR 695 Query: 340 VLSVDAEKKRVSLELKSA 393 VL VD ++KR+SL +++A Sbjct: 696 VLEVDEKRKRISLTMRTA 713 [17][TOP] >UniRef100_B3E6B1 RNA binding S1 domain protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E6B1_GEOLS Length = 762 Score = 84.7 bits (208), Expect = 3e-15 Identities = 42/104 (40%), Positives = 64/104 (61%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D++EG +G VT V FGAFV+ G + +GLVH+S LA+ F K+ D VQ GQ V V Sbjct: 642 EISDLQEGMILQGVVTNVTAFGAFVDIGVHQDGLVHVSHLANRFIKDPNDAVQVGQVVKV 701 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADAT 468 KVLS D ++KR++L +K + A+ ++ +P +E T Sbjct: 702 KVLSADPQRKRIALSIKESEPGGAAVRKAASPAAQPKQEPKSTT 745 [18][TOP] >UniRef100_C6E3L9 RNA binding S1 domain protein n=1 Tax=Geobacter sp. M21 RepID=C6E3L9_GEOSM Length = 756 Score = 84.3 bits (207), Expect = 4e-15 Identities = 42/85 (49%), Positives = 57/85 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 + + D+KEG +G VT V FGAFV+ G + +GLVH+S+L FTK+ D V+ GQ V Sbjct: 641 VTIADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLTHRFTKDPNDAVKVGQIVK 700 Query: 334 VKVLSVDAEKKRVSLELKSAVAAEA 408 VKVLS D E+KR+SL +K A +A Sbjct: 701 VKVLSADPERKRISLSIKQAEPEKA 725 [19][TOP] >UniRef100_UPI0001B44404 hypothetical protein LmonocytFSL_06170 n=1 Tax=Listeria monocytogenes FSL J2-003 RepID=UPI0001B44404 Length = 725 Score = 84.0 bits (206), Expect = 5e-15 Identities = 46/109 (42%), Positives = 62/109 (56%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L + Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717 [20][TOP] >UniRef100_UPI0001B43D06 hypothetical protein LmonocytogFSL_06115 n=1 Tax=Listeria monocytogenes FSL N1-017 RepID=UPI0001B43D06 Length = 725 Score = 84.0 bits (206), Expect = 5e-15 Identities = 46/109 (42%), Positives = 62/109 (56%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L + Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717 [21][TOP] >UniRef100_UPI0001B43B10 hypothetical protein LmonF_10391 n=1 Tax=Listeria monocytogenes FSL F2-515 RepID=UPI0001B43B10 Length = 301 Score = 84.0 bits (206), Expect = 5e-15 Identities = 46/109 (42%), Positives = 62/109 (56%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 185 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 244 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L + Sbjct: 245 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 293 [22][TOP] >UniRef100_Q8Y8K3 Lmo0898 protein n=2 Tax=Listeria monocytogenes RepID=Q8Y8K3_LISMO Length = 725 Score = 84.0 bits (206), Expect = 5e-15 Identities = 46/109 (42%), Positives = 62/109 (56%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L + Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717 [23][TOP] >UniRef100_Q7WGI8 Transcription accessory protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WGI8_BORBR Length = 791 Score = 84.0 bits (206), Expect = 5e-15 Identities = 61/146 (41%), Positives = 77/146 (52%), Gaps = 15/146 (10%) Frame = +1 Query: 13 ATVKAHGRSVLRPVRGPAGRRQVAFTGVR---PSVR-VFAEA------PAAEQAAKAIK- 159 A +KA R ++ G FT R P+VR +FAE P E K Sbjct: 600 ARIKADVRHIIGQREALKGVSPSDFTDERFGLPTVRDIFAELEKPGRDPRPEFKTAQFKE 659 Query: 160 ----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQK 327 L D+ G EG VT V FGAFV+ G + +GLVHIS LA F K+ +DVV+ GQ Sbjct: 660 GVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQT 719 Query: 328 VTVKVLSVDAEKKRVSLELKSAVAAE 405 VTVKVL VD +KRV+L ++ AAE Sbjct: 720 VTVKVLEVDVARKRVALTMRLNDAAE 745 [24][TOP] >UniRef100_Q721R8 S1 RNA binding domain protein n=1 Tax=Listeria monocytogenes str. 4b F2365 RepID=Q721R8_LISMF Length = 725 Score = 84.0 bits (206), Expect = 5e-15 Identities = 46/109 (42%), Positives = 62/109 (56%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L + Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717 [25][TOP] >UniRef100_Q4EKE0 S1 RNA binding domain protein n=1 Tax=Listeria monocytogenes str. 4b H7858 RepID=Q4EKE0_LISMO Length = 725 Score = 84.0 bits (206), Expect = 5e-15 Identities = 46/109 (42%), Positives = 62/109 (56%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L + Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717 [26][TOP] >UniRef100_C8KAD9 S1 RNA binding domain-containing protein n=2 Tax=Listeria monocytogenes RepID=C8KAD9_LISMO Length = 725 Score = 84.0 bits (206), Expect = 5e-15 Identities = 46/109 (42%), Positives = 62/109 (56%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L + Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717 [27][TOP] >UniRef100_C8K102 S1 RNA-binding domain-containing protein n=2 Tax=Listeria monocytogenes RepID=C8K102_LISMO Length = 725 Score = 84.0 bits (206), Expect = 5e-15 Identities = 46/109 (42%), Positives = 62/109 (56%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L + Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717 [28][TOP] >UniRef100_C8JTR8 S1 RNA binding domain-containing protein n=1 Tax=Listeria monocytogenes FSL N3-165 RepID=C8JTR8_LISMO Length = 725 Score = 84.0 bits (206), Expect = 5e-15 Identities = 46/109 (42%), Positives = 62/109 (56%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L + Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTM 717 [29][TOP] >UniRef100_Q45388 Protein tex n=1 Tax=Bordetella pertussis RepID=TEX_BORPE Length = 791 Score = 84.0 bits (206), Expect = 5e-15 Identities = 61/146 (41%), Positives = 77/146 (52%), Gaps = 15/146 (10%) Frame = +1 Query: 13 ATVKAHGRSVLRPVRGPAGRRQVAFTGVR---PSVR-VFAEA------PAAEQAAKAIK- 159 A +KA R ++ G FT R P+VR +FAE P E K Sbjct: 600 ARIKADVRHIIGQREALKGVSPSDFTDERFGLPTVRDIFAELEKPGRDPRPEFKTAQFKE 659 Query: 160 ----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQK 327 L D+ G EG VT V FGAFV+ G + +GLVHIS LA F K+ +DVV+ GQ Sbjct: 660 GVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQT 719 Query: 328 VTVKVLSVDAEKKRVSLELKSAVAAE 405 VTVKVL VD +KRV+L ++ AAE Sbjct: 720 VTVKVLEVDVARKRVALTMRLNDAAE 745 [30][TOP] >UniRef100_UPI0001B41F87 hypothetical protein LmonL_19961 n=1 Tax=Listeria monocytogenes LO28 RepID=UPI0001B41F87 Length = 105 Score = 83.6 bits (205), Expect = 6e-15 Identities = 43/88 (48%), Positives = 56/88 (63%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E PA I +ED+K+G E +GTV V +FGAFV+ G +GLVHISKL++ F KN Sbjct: 10 ELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNP 69 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 DVV G VTV V VD +K R++L + Sbjct: 70 MDVVSVGDVVTVWVDEVDTKKNRIALTM 97 [31][TOP] >UniRef100_B8DG61 Putative uncharacterized protein n=1 Tax=Listeria monocytogenes HCC23 RepID=B8DG61_LISMH Length = 725 Score = 83.6 bits (205), Expect = 6e-15 Identities = 46/109 (42%), Positives = 62/109 (56%) Frame = +1 Query: 58 GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNF 237 G R + + P + E PA I +ED+K+G E +GTV V +FGAFV+ Sbjct: 609 GKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDI 668 Query: 238 GANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 G +GLVHISKL++ F KN DVV G VTV V VD +K R++L + Sbjct: 669 GVKQDGLVHISKLSNSFVKNPMDVVSVGDIVTVWVDEVDTKKNRIALTM 717 [32][TOP] >UniRef100_Q1JW78 RNA binding S1 n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JW78_DESAC Length = 747 Score = 83.6 bits (205), Expect = 6e-15 Identities = 50/121 (41%), Positives = 70/121 (57%) Frame = +1 Query: 40 VLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEF 219 +L+P R P RRQ R V+ ++ D++ G +G+VT V F Sbjct: 643 LLKPGRDP--RRQFETASFRDDVQ---------------EMSDLQPGMVLQGSVTNVAAF 685 Query: 220 GAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVA 399 GAFV+ G + +GLVHIS+LA F KN ++V+ GQ V VKVLSVD +KR+SL +K A A Sbjct: 686 GAFVDIGVHQDGLVHISELADRFVKNPAEIVKVGQVVHVKVLSVDTTRKRISLSIKQAGA 745 Query: 400 A 402 + Sbjct: 746 S 746 [33][TOP] >UniRef100_C6J5S2 RNA binding S1 domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J5S2_9BACL Length = 743 Score = 83.6 bits (205), Expect = 6e-15 Identities = 45/104 (43%), Positives = 61/104 (58%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP E P +K+ED+ G E +GTV V +FGAFV+ G +GLVHIS+L Sbjct: 640 RPGRDPREELPPPIFRTDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKNDGLVHISQL 699 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEA 408 ++G+ K+ DVV G VTV VL+VD +K RV L ++ EA Sbjct: 700 SNGYVKHPMDVVSVGDNVTVWVLNVDVKKGRVGLTMRGPAGIEA 743 [34][TOP] >UniRef100_C0E9B9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9B9_9CLOT Length = 717 Score = 83.6 bits (205), Expect = 6e-15 Identities = 43/96 (44%), Positives = 63/96 (65%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P + ++L+D+K G E +GTV V +FGAFV+ G + +GLVH+S+LA+ F K+ Sbjct: 622 ELPKPLLRSDVLELKDLKPGMELKGTVRNVIDFGAFVDIGVHEDGLVHVSQLANRFVKHP 681 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEA 408 DVV+ G VTV VL VD ++KR+SL +K +A Sbjct: 682 LDVVKVGDVVTVWVLDVDLKRKRISLTMKGRPKTDA 717 [35][TOP] >UniRef100_B7X315 RNA binding S1 domain protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X315_COMTE Length = 793 Score = 83.6 bits (205), Expect = 6e-15 Identities = 38/76 (50%), Positives = 59/76 (77%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+++ F ++A++VV+ GQ V VK Sbjct: 658 IKDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVK 717 Query: 340 VLSVDAEKKRVSLELK 387 VL VD ++KR+SL +K Sbjct: 718 VLEVDVDRKRISLTMK 733 [36][TOP] >UniRef100_B8I5S2 RNA binding S1 domain protein n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I5S2_CLOCE Length = 718 Score = 83.2 bits (204), Expect = 8e-15 Identities = 42/89 (47%), Positives = 57/89 (64%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P + + +ED+K+G GTV V +FGAFV+ G + +GLVHIS+LA + KN Sbjct: 627 ELPKPMLHSDVLHMEDLKQGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKYVKNP 686 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 DVV G V VK+L VD E+KR+SL +K Sbjct: 687 MDVVAVGDIVKVKILEVDVERKRISLTMK 715 [37][TOP] >UniRef100_A6VTC2 RNA binding S1 domain protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTC2_MARMS Length = 720 Score = 83.2 bits (204), Expect = 8e-15 Identities = 40/75 (53%), Positives = 55/75 (73%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 KLEDV+EG EG VT V FGAFV+ G + +GL+HIS+LA F K+ +D+V+ GQ V V Sbjct: 642 KLEDVQEGMTLEGVVTNVAAFGAFVDLGVHQDGLIHISQLADRFVKDPRDLVRVGQVVKV 701 Query: 337 KVLSVDAEKKRVSLE 381 VL VD ++KR++L+ Sbjct: 702 TVLEVDVQRKRIALK 716 [38][TOP] >UniRef100_A5WHC1 RNA binding S1 domain protein n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WHC1_PSYWF Length = 849 Score = 83.2 bits (204), Expect = 8e-15 Identities = 40/100 (40%), Positives = 65/100 (65%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 + D++EG + EG VT V FG FV+ G + +GLVHIS++A+ F ++ ++V+PG V+V+ Sbjct: 691 VSDLEEGMQLEGVVTNVTGFGCFVDVGVHQDGLVHISEMANDFVEDPMNLVKPGDIVSVR 750 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGA 459 V+S+DA++ R+ +KS AA A S T+ + E A Sbjct: 751 VISIDAKRNRIGFSMKSEDAASAKRATSPQRSTDKNAENA 790 [39][TOP] >UniRef100_C2KZ93 S1 domain RNA-binding protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KZ93_9FIRM Length = 753 Score = 83.2 bits (204), Expect = 8e-15 Identities = 43/89 (48%), Positives = 59/89 (66%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 + PA ++LED+KEG +GTV V +FGAFV+ G + +GLVHIS L+ F K+ Sbjct: 662 DVPAPILREDVLELEDLKEGMVLQGTVRNVIDFGAFVDIGVHQDGLVHISALSKKFVKHP 721 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 DVV+ G V VKVLSVD +K++SL +K Sbjct: 722 LDVVKLGDIVKVKVLSVDVARKKISLSMK 750 [40][TOP] >UniRef100_Q65N46 Putative RNA binding protein containing S1 RNA binding domain,YdcI n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65N46_BACLD Length = 720 Score = 82.8 bits (203), Expect = 1e-14 Identities = 45/88 (51%), Positives = 55/88 (62%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P ++LED+KEG E +GTV V +FGAFV+ G +GLVHISKL+ F K+ Sbjct: 629 EVPKPLLKTDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSHSFVKHP 688 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 DVV G VTV V VDA K RVSL + Sbjct: 689 LDVVSVGDIVTVWVEDVDAAKGRVSLSM 716 [41][TOP] >UniRef100_Q3IZT3 RNA binding protein n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IZT3_RHOS4 Length = 773 Score = 82.8 bits (203), Expect = 1e-14 Identities = 43/100 (43%), Positives = 65/100 (65%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 646 EISDLKPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 705 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 456 +V+ VD +KR+ L ++ +A+A A+ S+ EP R+G Sbjct: 706 RVVEVDVARKRIGLTMRKD-SADARAQASERRSAEPPRKG 744 [42][TOP] >UniRef100_B9KLW9 RNA binding S1 domain protein n=1 Tax=Rhodobacter sphaeroides KD131 RepID=B9KLW9_RHOSK Length = 773 Score = 82.8 bits (203), Expect = 1e-14 Identities = 43/100 (43%), Positives = 65/100 (65%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 646 EISDLKPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 705 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 456 +V+ VD +KR+ L ++ +A+A A+ S+ EP R+G Sbjct: 706 RVVEVDVARKRIGLTMRKD-SADARAQASERRSAEPPRKG 744 [43][TOP] >UniRef100_A3PMG6 RNA binding S1 domain protein n=1 Tax=Rhodobacter sphaeroides ATCC 17029 RepID=A3PMG6_RHOS1 Length = 773 Score = 82.8 bits (203), Expect = 1e-14 Identities = 43/100 (43%), Positives = 65/100 (65%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 646 EISDLKPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 705 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 456 +V+ VD +KR+ L ++ +A+A A+ S+ EP R+G Sbjct: 706 RVVEVDVARKRIGLTMRKD-SADARAQASERRSAEPPRKG 744 [44][TOP] >UniRef100_A5ZAL1 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5ZAL1_9FIRM Length = 711 Score = 82.8 bits (203), Expect = 1e-14 Identities = 41/89 (46%), Positives = 59/89 (66%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P + + +D+KEG E +GTV V +FGAFV+ G + +GLVHIS++++ F K+ Sbjct: 622 EMPKPVLKSDVLDFDDLKEGMELKGTVRNVIDFGAFVDIGVHQDGLVHISEMSNKFIKHP 681 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 DVV G V V+VLSVD E+KR+ L +K Sbjct: 682 LDVVSVGDVVDVRVLSVDKERKRIQLSMK 710 [45][TOP] >UniRef100_A9U7P4 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7P4_PHYPA Length = 398 Score = 82.8 bits (203), Expect = 1e-14 Identities = 44/98 (44%), Positives = 61/98 (62%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP E P +K+ED+ G E +GTV V +FGAFV+ G ++GLVHIS+L Sbjct: 296 RPGRDPREELPLPIFRTDVLKIEDLTPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQL 355 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 390 +SG+ K+ DVV G VTV VL+VD +K RV L +++ Sbjct: 356 SSGYVKHPMDVVSVGDNVTVWVLNVDLKKGRVGLTMRN 393 [46][TOP] >UniRef100_UPI0001851521 transcription accessory protein n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851521 Length = 723 Score = 82.4 bits (202), Expect = 1e-14 Identities = 44/79 (55%), Positives = 54/79 (68%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+ G E +GTV V +FGAFV+ G +GLVHISKL GF K+ DVV GQ VT Sbjct: 640 LKLEDLAVGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPLDVVSVGQVVT 699 Query: 334 VKVLSVDAEKKRVSLELKS 390 V V SVD +K RV+L + S Sbjct: 700 VWVDSVDVQKGRVALTMLS 718 [47][TOP] >UniRef100_UPI00018506B3 transcription accessory protein n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI00018506B3 Length = 727 Score = 82.4 bits (202), Expect = 1e-14 Identities = 44/79 (55%), Positives = 54/79 (68%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+ G E +GTV V +FGAFV+ G +GLVHISKL GF K+ DVV GQ VT Sbjct: 644 LKLEDLAVGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPLDVVSVGQVVT 703 Query: 334 VKVLSVDAEKKRVSLELKS 390 V V SVD +K RV+L + S Sbjct: 704 VWVDSVDVQKGRVALTMLS 722 [48][TOP] >UniRef100_Q7W5T7 Transcription accessory protein n=1 Tax=Bordetella parapertussis RepID=Q7W5T7_BORPA Length = 791 Score = 82.4 bits (202), Expect = 1e-14 Identities = 60/146 (41%), Positives = 76/146 (52%), Gaps = 15/146 (10%) Frame = +1 Query: 13 ATVKAHGRSVLRPVRGPAGRRQVAFTGVR---PSVR-VFAEA------PAAEQAAKAIK- 159 A +KA R ++ G FT R P+VR +FAE P E K Sbjct: 600 ARIKADVRHIIGQREALKGVSPSDFTDERFGLPTVRDIFAELEKPGRDPRPEFKTAQFKE 659 Query: 160 ----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQK 327 L D+ G EG VT V FGAFV+ G + +GLVHIS LA F K+ +DVV+ GQ Sbjct: 660 GVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQT 719 Query: 328 VTVKVLSVDAEKKRVSLELKSAVAAE 405 VTVKVL VD +KRV+L ++ AE Sbjct: 720 VTVKVLEVDVARKRVALTMRLNDTAE 745 [49][TOP] >UniRef100_Q3A645 Transcriptional accessory protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A645_PELCD Length = 759 Score = 82.4 bits (202), Expect = 1e-14 Identities = 52/124 (41%), Positives = 67/124 (54%) Frame = +1 Query: 46 RPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGA 225 +P R P RRQ R VR ++ D+KEG GTVT V FGA Sbjct: 622 KPGRDP--RRQFETVSFRDDVR---------------EISDLKEGMILSGTVTNVAAFGA 664 Query: 226 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAE 405 FV+ G + +GLVH+S LA F K+ +VV+ G V VKVLSVDA +KR+ L +K A Sbjct: 665 FVDIGVHQDGLVHVSHLAHRFVKDPGEVVRVGDIVKVKVLSVDAARKRIGLSIKEAQPEP 724 Query: 406 ASAE 417 SA+ Sbjct: 725 DSAQ 728 [50][TOP] >UniRef100_B9JAJ3 RNA-binding domain S1-containing transcriptional regulator n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JAJ3_AGRRK Length = 769 Score = 82.4 bits (202), Expect = 1e-14 Identities = 40/85 (47%), Positives = 59/85 (69%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ ++V+ G V V Sbjct: 643 EISDLKPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEIVKAGDVVKV 702 Query: 337 KVLSVDAEKKRVSLELKSAVAAEAS 411 KV+ VDA++KR+SL ++ AEA+ Sbjct: 703 KVVDVDAKRKRISLTMRKDGGAEAA 727 [51][TOP] >UniRef100_B5E861 RNA binding S1 domain protein n=1 Tax=Geobacter bemidjiensis Bem RepID=B5E861_GEOBB Length = 754 Score = 82.4 bits (202), Expect = 1e-14 Identities = 40/85 (47%), Positives = 58/85 (68%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 + + D+KEG +G VT V FGAFV+ G + +GLVH+S+L+ FTK+ D V+ G+ V Sbjct: 639 VTIADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRFTKDPNDAVKVGEIVK 698 Query: 334 VKVLSVDAEKKRVSLELKSAVAAEA 408 VK+LS D E+KR+SL +K A +A Sbjct: 699 VKLLSADPERKRISLSIKQAEPEKA 723 [52][TOP] >UniRef100_A9BZV4 RNA binding S1 domain protein n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BZV4_DELAS Length = 786 Score = 82.4 bits (202), Expect = 1e-14 Identities = 38/76 (50%), Positives = 58/76 (76%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+++ F ++A++VV+ GQ V VK Sbjct: 658 IKDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVK 717 Query: 340 VLSVDAEKKRVSLELK 387 VL VD +KR+SL +K Sbjct: 718 VLEVDVARKRISLTMK 733 [53][TOP] >UniRef100_C7MX99 Transcriptional accessory protein n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MX99_SACVD Length = 775 Score = 82.4 bits (202), Expect = 1e-14 Identities = 39/76 (51%), Positives = 53/76 (69%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 LED+K G EG VT V FGAFV+ G + +GLVH+S ++ + + +DVV+PG VTVK Sbjct: 641 LEDLKPGMRLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHRYVSDPRDVVKPGDVVTVK 700 Query: 340 VLSVDAEKKRVSLELK 387 VL VD +KR+SL L+ Sbjct: 701 VLDVDVPRKRISLTLR 716 [54][TOP] >UniRef100_C5T4L5 RNA binding S1 domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4L5_ACIDE Length = 789 Score = 82.4 bits (202), Expect = 1e-14 Identities = 38/76 (50%), Positives = 56/76 (73%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+LA F +A++VV+ G V VK Sbjct: 658 IKDLKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLAHKFVNDAREVVKTGDIVKVK 717 Query: 340 VLSVDAEKKRVSLELK 387 V+ VD E+KR+ L +K Sbjct: 718 VMEVDVERKRIGLSMK 733 [55][TOP] >UniRef100_UPI000196798C hypothetical protein SUBVAR_02860 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=UPI000196798C Length = 719 Score = 82.0 bits (201), Expect = 2e-14 Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 2/127 (1%) Frame = +1 Query: 13 ATVKAHGRSVLRPVRGPAGR--RQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSE 186 A VKA G L G + +P V P + + LED+K G E Sbjct: 591 AAVKAKGEKTLCETLGVGAPTLHDIVSELCKPGRDVRDSLPKPLLRSDVMSLEDLKPGME 650 Query: 187 YEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKK 366 GTV V +FGAFV+ G + +GLVHIS++++ F K+ ++V++ G V VKVLSVD KK Sbjct: 651 LTGTVRNVIDFGAFVDLGVHQDGLVHISQISNRFIKHPREVLKVGDIVKVKVLSVDVAKK 710 Query: 367 RVSLELK 387 R++L +K Sbjct: 711 RIALTMK 717 [56][TOP] >UniRef100_Q2JGI6 RNA binding S1 n=1 Tax=Frankia sp. CcI3 RepID=Q2JGI6_FRASC Length = 864 Score = 82.0 bits (201), Expect = 2e-14 Identities = 51/121 (42%), Positives = 66/121 (54%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP+ R A E A D+ G EGTVT V FGAFV+ G + +GLVH+S + Sbjct: 641 RPAFRTAAFTEGIETLA------DLVPGMTLEGTVTNVAAFGAFVDIGVHQDGLVHVSAM 694 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 456 + F + ++VV+PG VTVKVL VD +KR+SL L+ A A D E DR G Sbjct: 695 SKNFVSDPREVVKPGDIVTVKVLDVDIPRKRISLTLRLDDEAGAGGPGRRD--GEGDRRG 752 Query: 457 A 459 A Sbjct: 753 A 753 [57][TOP] >UniRef100_B8FHU3 RNA binding S1 domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FHU3_DESAA Length = 752 Score = 82.0 bits (201), Expect = 2e-14 Identities = 39/80 (48%), Positives = 56/80 (70%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 +++D++ G E G VT V FGAFV+ G + +GLVHIS+L+ GF KN DVV+ Q+V V Sbjct: 633 EMKDLEPGMELPGIVTNVTNFGAFVDVGVHQDGLVHISQLSDGFVKNPADVVKVQQRVKV 692 Query: 337 KVLSVDAEKKRVSLELKSAV 396 +VL VD +KR+SL +K + Sbjct: 693 RVLEVDLPRKRISLSMKKKI 712 [58][TOP] >UniRef100_A9NHV1 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHV1_ACHLI Length = 724 Score = 82.0 bits (201), Expect = 2e-14 Identities = 41/77 (53%), Positives = 55/77 (71%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 + +ED+K G E EGTV V +FGAFV+ G +GLVHISKL++ F K+ KDVV GQ VT Sbjct: 643 LSIEDLKVGMELEGTVRNVTDFGAFVDVGLKNDGLVHISKLSNKFVKHPKDVVSVGQIVT 702 Query: 334 VKVLSVDAEKKRVSLEL 384 V VL++D +K +V L + Sbjct: 703 VWVLNIDRDKGQVGLTM 719 [59][TOP] >UniRef100_A7Z1N2 YdcI n=1 Tax=Bacillus amyloliquefaciens FZB42 RepID=A7Z1N2_BACA2 Length = 719 Score = 82.0 bits (201), Expect = 2e-14 Identities = 44/88 (50%), Positives = 56/88 (63%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P ++LED+KEG E +GTV V +FGAFV+ G +GLVHISKL++ F K+ Sbjct: 630 EVPKPLLKKDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHP 689 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 DVV G VTV V VD +K RVSL + Sbjct: 690 LDVVSVGDIVTVWVEGVDVQKGRVSLSM 717 [60][TOP] >UniRef100_C7ICV4 RNA binding S1 domain protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICV4_9CLOT Length = 718 Score = 82.0 bits (201), Expect = 2e-14 Identities = 42/89 (47%), Positives = 56/89 (62%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P + + +ED+K G GTV V +FGAFV+ G + +GLVHIS+LA F KN Sbjct: 627 ELPKPMLHSDVLNMEDLKAGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKFVKNP 686 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 DVV G V VKV+ VD E+KR+SL ++ Sbjct: 687 MDVVAVGDIVKVKVIEVDVERKRISLTMR 715 [61][TOP] >UniRef100_B8HDI0 RNA binding S1 domain protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HDI0_ARTCA Length = 830 Score = 81.6 bits (200), Expect = 2e-14 Identities = 40/77 (51%), Positives = 54/77 (70%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+K G EGTVT V FGAFV+ G + +GLVH+S LA+ F + ++VV+ GQ V V Sbjct: 656 KISDLKPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSGQVVRV 715 Query: 337 KVLSVDAEKKRVSLELK 387 KVL D E+KR+SL L+ Sbjct: 716 KVLEADPERKRISLTLR 732 [62][TOP] >UniRef100_A9IIW4 Transcription accessory protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IIW4_BORPD Length = 791 Score = 81.6 bits (200), Expect = 2e-14 Identities = 57/140 (40%), Positives = 74/140 (52%), Gaps = 15/140 (10%) Frame = +1 Query: 13 ATVKAHGRSVLRPVRGPAGRRQVAFTGVR---PSVR-VFAEA------PAAEQAAKAIK- 159 A +KA + ++ G FT R P+VR +FAE P E K Sbjct: 600 AKIKADVQQIIGQREALKGVSPADFTDERFGLPTVRDIFAELEKPGRDPRPEFKTAQFKD 659 Query: 160 ----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQK 327 L D+ G EG VT V FGAFV+ G + +GLVHIS LA F K+ +DVV+ GQ Sbjct: 660 GVETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQT 719 Query: 328 VTVKVLSVDAEKKRVSLELK 387 VTVKVL VD +KRV+L ++ Sbjct: 720 VTVKVLEVDVARKRVALTMR 739 [63][TOP] >UniRef100_A5G3R7 RNA binding S1 domain protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G3R7_GEOUR Length = 757 Score = 81.6 bits (200), Expect = 2e-14 Identities = 41/82 (50%), Positives = 57/82 (69%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 +L D++EG +GTVT V FGAFV+ G + +GLVH+S LA F K+ + V+ GQ V V Sbjct: 642 ELGDLQEGMILQGTVTNVTAFGAFVDIGVHQDGLVHVSHLAQRFVKDPNEAVKVGQIVKV 701 Query: 337 KVLSVDAEKKRVSLELKSAVAA 402 KVLSVD ++KR++L +K A A Sbjct: 702 KVLSVDLQRKRIALSIKEAEPA 723 [64][TOP] >UniRef100_C1Z9K3 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1Z9K3_PLALI Length = 568 Score = 81.6 bits (200), Expect = 2e-14 Identities = 38/82 (46%), Positives = 58/82 (70%) Frame = +1 Query: 163 EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKV 342 E++K G Y GTV+++++FGAF+ +GL HIS+L+ GF KN +VVQ G+K+ VKV Sbjct: 482 EEIKVGRVYNGTVSSIKDFGAFIEIAPGKDGLCHISELSDGFVKNVNEVVQVGEKIQVKV 541 Query: 343 LSVDAEKKRVSLELKSAVAAEA 408 +++D E+ RV L K+ +A EA Sbjct: 542 IAID-EQNRVKLSRKAVLADEA 562 [65][TOP] >UniRef100_B5HSU4 Transcriptional accessory protein n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HSU4_9ACTO Length = 788 Score = 81.6 bits (200), Expect = 2e-14 Identities = 44/100 (44%), Positives = 61/100 (61%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+ G EG VT V FGAF++ G + +GL H+S L+ F K+ +DVV+PG V V Sbjct: 652 KISDLSAGMVLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKTFVKDPRDVVKPGDIVKV 711 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 456 KVL VD +KR+SL L+ + EA A+ S +P R G Sbjct: 712 KVLDVDIPRKRISLTLR--LDDEAQAKPSGGERRQPQRGG 749 [66][TOP] >UniRef100_A6CTJ1 YdcI n=1 Tax=Bacillus sp. SG-1 RepID=A6CTJ1_9BACI Length = 717 Score = 81.6 bits (200), Expect = 2e-14 Identities = 46/97 (47%), Positives = 58/97 (59%) Frame = +1 Query: 94 VRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISK 273 VRP + E A +KLED++ G E +GTV V +FGAFV+ G +GLVHISK Sbjct: 618 VRPGRDLRDELSAPLLKKDVLKLEDLQPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISK 677 Query: 274 LASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 L GF K+ DVV G VTV V S D +K RV+L + Sbjct: 678 LRKGFVKHPLDVVSVGDVVTVWVESADVKKGRVALSM 714 [67][TOP] >UniRef100_UPI0001B54FC8 RNA-binding S1 domain-containing protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54FC8 Length = 788 Score = 81.3 bits (199), Expect = 3e-14 Identities = 38/77 (49%), Positives = 52/77 (67%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+K G EG VT V FGAF++ G + +GL H+S L+ F K+ +DVV+PG V V Sbjct: 650 KIADLKPGMRLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKNFVKDPRDVVKPGDIVKV 709 Query: 337 KVLSVDAEKKRVSLELK 387 KVL VD +KR+SL L+ Sbjct: 710 KVLDVDVPRKRISLTLR 726 [68][TOP] >UniRef100_UPI0001788115 Tex-like protein protein-like protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788115 Length = 740 Score = 81.3 bits (199), Expect = 3e-14 Identities = 44/97 (45%), Positives = 59/97 (60%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP E P +K+ED+ G E +GTV V +FGAFV+ G ++GLVHIS+L Sbjct: 636 RPGRDPREELPLPIFRQDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQL 695 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 + GF K+ DVV G VTV VL+VD +K RV L ++ Sbjct: 696 SDGFVKHPMDVVSVGDNVTVWVLNVDLKKGRVGLTMR 732 [69][TOP] >UniRef100_Q82MJ1 Putative transcription accessory protein n=1 Tax=Streptomyces avermitilis RepID=Q82MJ1_STRAW Length = 810 Score = 81.3 bits (199), Expect = 3e-14 Identities = 41/90 (45%), Positives = 56/90 (62%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V Sbjct: 648 KISDLASGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKV 707 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESD 426 KVL +D +KR+SL L+ A AS D Sbjct: 708 KVLDIDIPRKRISLTLRLDDEAAASEGRQD 737 [70][TOP] >UniRef100_B2IGR3 RNA binding S1 domain protein n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IGR3_BEII9 Length = 766 Score = 81.3 bits (199), Expect = 3e-14 Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 1/139 (0%) Frame = +1 Query: 1 LGRTATVKAHGRSVLRPVR-GPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKE 177 +G TAT+K+ + R G R + +P E A A ++D+K Sbjct: 591 MGDTATLKSLNPAQFVDERFGLPTVRDILLELEKPGRDPRPEFKTATFAEGIDDIKDLKP 650 Query: 178 GSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDA 357 G EGTVT V FGAFV+ G + +GLVHIS+LA F K D+V+ G V V+V+ VD Sbjct: 651 GMTLEGTVTNVTNFGAFVDIGVHQDGLVHISQLADRFVKEPNDLVKAGDVVKVRVVEVDV 710 Query: 358 EKKRVSLELKSAVAAEASA 414 ++KR++L +++ A SA Sbjct: 711 KRKRIALSMRTQEATPQSA 729 [71][TOP] >UniRef100_A9F254 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F254_SORC5 Length = 788 Score = 81.3 bits (199), Expect = 3e-14 Identities = 41/105 (39%), Positives = 61/105 (58%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 +ED+K G E EG VT V FGAFV+ G + +GLVH+S+LA F K+ +V + G+K+ V+ Sbjct: 653 MEDLKPGMELEGVVTNVTAFGAFVDIGVHQDGLVHVSQLADRFVKDPNEVAKVGEKIKVR 712 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDD 474 VL +D +KR+SL K A + ++ D G + D Sbjct: 713 VLEIDLVRKRISLTAKKGGAPAGARPQAGGPSAGGDARGRNDRGD 757 [72][TOP] >UniRef100_A8FA76 RNA binding transcriptional accessory protein n=1 Tax=Bacillus pumilus SAFR-032 RepID=A8FA76_BACP2 Length = 719 Score = 81.3 bits (199), Expect = 3e-14 Identities = 44/88 (50%), Positives = 56/88 (63%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P +KLED+K+G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ Sbjct: 628 EVPKPLLKTDVLKLEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNRFVKHP 687 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 DVV G VTV V SVD K RV+L + Sbjct: 688 LDVVSVGDIVTVWVDSVDQAKGRVALSM 715 [73][TOP] >UniRef100_A1W6M2 RNA binding S1 domain protein n=1 Tax=Acidovorax sp. JS42 RepID=A1W6M2_ACISJ Length = 798 Score = 81.3 bits (199), Expect = 3e-14 Identities = 38/76 (50%), Positives = 57/76 (75%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 + D++EG EGTV+ V +FGAFV+ G + +GLVH+S+L+ F ++A++VV+ G V VK Sbjct: 673 IADLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREVVKTGDIVKVK 732 Query: 340 VLSVDAEKKRVSLELK 387 VL VDA +KR+SL +K Sbjct: 733 VLEVDAARKRISLSMK 748 [74][TOP] >UniRef100_D0C0W2 Transcriptional accessory protein n=1 Tax=Acinetobacter sp. RUH2624 RepID=D0C0W2_9GAMM Length = 795 Score = 81.3 bits (199), Expect = 3e-14 Identities = 40/87 (45%), Positives = 59/87 (67%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 647 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAE 417 +V+ VDAE+ RV+L +++ AA A+ Sbjct: 707 RVMQVDAERNRVNLSMRAEGAAPVKAQ 733 [75][TOP] >UniRef100_B4AIJ4 Protein YhgF n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AIJ4_BACPU Length = 719 Score = 81.3 bits (199), Expect = 3e-14 Identities = 44/88 (50%), Positives = 56/88 (63%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P +KLED+K+G E +GTV V +FGAFV+ G +GLVHISKL++ F K+ Sbjct: 628 EVPKPLLKTDVLKLEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNRFVKHP 687 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 DVV G VTV V SVD K RV+L + Sbjct: 688 LDVVSVGDIVTVWVDSVDQAKGRVALSM 715 [76][TOP] >UniRef100_A8W0E6 Stage II sporulation E family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8W0E6_9BACI Length = 724 Score = 81.3 bits (199), Expect = 3e-14 Identities = 40/77 (51%), Positives = 53/77 (68%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +++ED+++G E EGTV V +FGAFV+ G +GLVH+SKL GF KN DVV G VT Sbjct: 643 LQMEDLEKGMELEGTVRNVVDFGAFVDIGVKQDGLVHVSKLRKGFVKNPMDVVNVGDVVT 702 Query: 334 VKVLSVDAEKKRVSLEL 384 V V SVD K R++L + Sbjct: 703 VWVDSVDVHKGRIALTM 719 [77][TOP] >UniRef100_UPI0001BB916D conserved hypothetical protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=UPI0001BB916D Length = 788 Score = 80.9 bits (198), Expect = 4e-14 Identities = 44/105 (41%), Positives = 65/105 (61%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 640 EVAQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVADPHKVVKPGQIVQV 699 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATD 471 +VL+VDAE+ RV+L ++ A A A +P RE + ++ Sbjct: 700 RVLTVDAERNRVNLSMRPEGAEAAKAPR------QPRRENTERSE 738 [78][TOP] >UniRef100_Q6MPA5 Putative RNA binding protein with S1 RNA-binding domain n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPA5_BDEBA Length = 780 Score = 80.9 bits (198), Expect = 4e-14 Identities = 45/102 (44%), Positives = 61/102 (59%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 ++++D+ EG G VT V FGAFV+ G + +GLVHIS L+ F + + VV PG VT Sbjct: 641 MEVKDLTEGMICPGIVTNVTNFGAFVDIGVHQDGLVHISALSHKFVDDPRKVVNPGDHVT 700 Query: 334 VKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGA 459 VKVL VD K ++SL +K A EASA + P+ GA Sbjct: 701 VKVLKVDVVKNQISLTMKMDDAPEASAPRGE---RRPENRGA 739 [79][TOP] >UniRef100_Q6F7B6 Putative uncharacterized protein n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6F7B6_ACIAD Length = 796 Score = 80.9 bits (198), Expect = 4e-14 Identities = 42/87 (48%), Positives = 60/87 (68%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 647 EIAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAE 417 +V+ VDAE+KRV+L ++ AEA A+ Sbjct: 707 RVIQVDAERKRVNLSMRPE-GAEAPAK 732 [80][TOP] >UniRef100_B9MA81 Resolvase RNase H domain protein n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MA81_DIAST Length = 798 Score = 80.9 bits (198), Expect = 4e-14 Identities = 38/76 (50%), Positives = 56/76 (73%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 + D++EG EGTV+ V +FGAFV+ G + +GLVH+S+L+ F +A++VV+ G V VK Sbjct: 673 IADLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 732 Query: 340 VLSVDAEKKRVSLELK 387 VL VDA +KR+SL +K Sbjct: 733 VLEVDAARKRISLSMK 748 [81][TOP] >UniRef100_A8ZSR0 RNA binding S1 domain protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZSR0_DESOH Length = 759 Score = 80.9 bits (198), Expect = 4e-14 Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 1/100 (1%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++DV+ G + G VT + FGAFV+ G + +GLVHIS++A F K+ D+V+ Q+V V Sbjct: 629 IDDVQPGMKLPGIVTNITAFGAFVDIGVHQDGLVHISQMADRFVKSPADIVKVQQRVMVT 688 Query: 340 VLSVDAEKKRVSLELKS-AVAAEASAEESDDIITEPDREG 456 VL VD E+KR+SL +K+ A A+ EE+ PD G Sbjct: 689 VLEVDKERKRISLSMKAERPAPTAAREETAGPSPRPDTPG 728 [82][TOP] >UniRef100_C7PIE5 RNA binding S1 domain protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PIE5_CHIPD Length = 760 Score = 80.9 bits (198), Expect = 4e-14 Identities = 45/106 (42%), Positives = 60/106 (56%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 +PS E E A K+ED+K G G VT + FGAFV+ G +GLVHIS L Sbjct: 610 KPSRDPRDEIAIFEYAEGIHKMEDLKVGMTLPGVVTNITNFGAFVDIGVKQDGLVHISHL 669 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASA 414 ++ F N + V+ QKVTV VL VD +KR+SL +K A +A + Sbjct: 670 SNRFISNPNEAVKLNQKVTVTVLEVDPSRKRISLSMKDNEAPQAGS 715 [83][TOP] >UniRef100_B4VGY9 S1 RNA binding domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VGY9_9CYAN Length = 718 Score = 80.9 bits (198), Expect = 4e-14 Identities = 39/79 (49%), Positives = 56/79 (70%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G E EG VT V FGAFV+ G + +GLVHIS+LA F + K++V+ GQ V V Sbjct: 637 EMSDLKVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKEIVKVGQVVNV 696 Query: 337 KVLSVDAEKKRVSLELKSA 393 +VLSVD + KR+ L +++A Sbjct: 697 RVLSVDEKLKRIGLSMRAA 715 [84][TOP] >UniRef100_B0MH09 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MH09_9FIRM Length = 713 Score = 80.9 bits (198), Expect = 4e-14 Identities = 39/80 (48%), Positives = 57/80 (71%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +++ED+KEG + +GTV V +FGAFV+ G + +GLVHIS++A F K+ +VV G V Sbjct: 634 MEMEDLKEGMKLKGTVRNVIDFGAFVDIGVHQDGLVHISQMADRFVKHPLEVVSVGDVVD 693 Query: 334 VKVLSVDAEKKRVSLELKSA 393 V VLSVD EKKR+ L ++ + Sbjct: 694 VTVLSVDLEKKRIQLSMRKS 713 [85][TOP] >UniRef100_O31489 Uncharacterized protein ydcI n=1 Tax=Bacillus subtilis RepID=YDCI_BACSU Length = 719 Score = 80.9 bits (198), Expect = 4e-14 Identities = 42/77 (54%), Positives = 54/77 (70%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 ++LED+KEG E +GTV V +FGAFV+ G +GLVHISKL++ F K+ DVV G VT Sbjct: 641 LQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVT 700 Query: 334 VKVLSVDAEKKRVSLEL 384 V V VD +K RVSL + Sbjct: 701 VWVDGVDVQKGRVSLSM 717 [86][TOP] >UniRef100_B8IV07 RNA binding S1 domain protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IV07_METNO Length = 769 Score = 80.5 bits (197), Expect = 5e-14 Identities = 47/104 (45%), Positives = 61/104 (58%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RPS R E A D+K G EG VT V FGAFV+ G + +GLVHIS L Sbjct: 630 RPSFRTATFREGVETIA------DLKPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHISAL 683 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEA 408 ++ F K+ ++VV+PG V VKVL VD +KR+SL ++ AA A Sbjct: 684 SNSFVKDPRNVVKPGDVVKVKVLDVDVPRKRISLTMRLDDAAGA 727 [87][TOP] >UniRef100_B5ZS43 RNA binding S1 domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B5ZS43_RHILW Length = 769 Score = 80.5 bits (197), Expect = 5e-14 Identities = 44/110 (40%), Positives = 64/110 (58%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RPS + A A + + D+K G EGTVT V FGAFV+ G + +GLVH+S+L Sbjct: 629 RPSFKTAAFAEGVNE------ISDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQL 682 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESD 426 A F K+ +VV+ G V V+V+ VDA++KR++L +K + A D Sbjct: 683 ADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMKRDDGSAAPPPRGD 732 [88][TOP] >UniRef100_Q6SGM3 S1 RNA binding domain protein n=1 Tax=uncultured marine bacterium 463 RepID=Q6SGM3_9BACT Length = 772 Score = 80.5 bits (197), Expect = 5e-14 Identities = 40/88 (45%), Positives = 57/88 (64%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D++ EGTVT V FGAF++ G + +GLVHIS LA F K+ +DVV+ G V V Sbjct: 644 KISDLRPDMVLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRV 703 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEE 420 KV+ VDA +KR+ L ++ + A AE+ Sbjct: 704 KVMEVDAPRKRIGLSMRLSDKAGEQAEK 731 [89][TOP] >UniRef100_C1P9H9 RNA binding S1 domain protein n=1 Tax=Bacillus coagulans 36D1 RepID=C1P9H9_BACCO Length = 725 Score = 80.5 bits (197), Expect = 5e-14 Identities = 41/77 (53%), Positives = 53/77 (68%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E +GTV V +FGAFV+ G +GLVHISKL+ GF K+ D+V G VT Sbjct: 645 MKLEDLKPGMEMQGTVRNVVDFGAFVDVGVKEDGLVHISKLSKGFVKHPLDIVSVGDIVT 704 Query: 334 VKVLSVDAEKKRVSLEL 384 V V VD +K R+SL + Sbjct: 705 VWVEKVDVQKGRLSLTM 721 [90][TOP] >UniRef100_B7RVW5 S1 RNA binding domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RVW5_9GAMM Length = 772 Score = 80.5 bits (197), Expect = 5e-14 Identities = 40/88 (45%), Positives = 57/88 (64%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D++ EGTVT V FGAF++ G + +GLVHIS LA F K+ +DVV+ G V V Sbjct: 644 KISDLRPDMVLEGTVTNVTNFGAFIDIGVHQDGLVHISALAEKFVKDPRDVVKAGDVVRV 703 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEE 420 KV+ VDA +KR+ L ++ + A AE+ Sbjct: 704 KVMEVDAPRKRIGLSMRLSDKAGEQAEK 731 [91][TOP] >UniRef100_A1ZG34 S1 RNA binding domain protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZG34_9SPHI Length = 764 Score = 80.5 bits (197), Expect = 5e-14 Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 2/128 (1%) Frame = +1 Query: 118 AEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 297 A+ E A +ED+K G + G VT V +FGAFV+ G + +GLVHIS+L++ F + Sbjct: 618 AKFEVVEFAEGVNTIEDLKTGMKLNGVVTNVTKFGAFVDIGVHQDGLVHISELSNTFVSD 677 Query: 298 AKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAE--ESDDIITEPDREGADATD 471 +VV+ QKV V VL VD E+KR+ L +K A +A+ + D +P D Sbjct: 678 PNEVVKVQQKVEVMVLDVDVERKRIQLTMKGEAGAADTAKRRNNKDRKNKPQNRRKDGVG 737 Query: 472 DDEDVEVE 495 + E E Sbjct: 738 NKSKKEEE 745 [92][TOP] >UniRef100_UPI0001B4D0A3 transcriptional accessory protein n=1 Tax=Streptomyces lividans TK24 RepID=UPI0001B4D0A3 Length = 780 Score = 80.1 bits (196), Expect = 7e-14 Identities = 41/99 (41%), Positives = 58/99 (58%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V Sbjct: 646 KISDLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKV 705 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDRE 453 KV+ VD +KR+SL L+ A E + P R+ Sbjct: 706 KVMDVDIPRKRISLTLRLDDEAAPQGEPKKERGARPPRQ 744 [93][TOP] >UniRef100_UPI0001AEF256 transcription accessory protein n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEF256 Length = 792 Score = 80.1 bits (196), Expect = 7e-14 Identities = 43/97 (44%), Positives = 58/97 (59%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP+ R A E K+ D+ G EG VT V FGAFV+ G + +GLVH+S + Sbjct: 631 RPAFRTAAFKEGVE------KISDLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAM 684 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 + F K+ +DVV+PG V VKVL VD +KR+SL L+ Sbjct: 685 SKTFVKDPRDVVKPGDIVKVKVLDVDIPRKRISLTLR 721 [94][TOP] >UniRef100_UPI0001AEDDFE transcriptional accessory protein n=1 Tax=Streptomyces albus J1074 RepID=UPI0001AEDDFE Length = 807 Score = 80.1 bits (196), Expect = 7e-14 Identities = 38/77 (49%), Positives = 54/77 (70%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 KL D++ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ ++VV+PG V V Sbjct: 648 KLSDLEAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRNFVKDPREVVKPGDIVKV 707 Query: 337 KVLSVDAEKKRVSLELK 387 KV+ VDA +KR+SL L+ Sbjct: 708 KVMEVDAARKRISLTLR 724 [95][TOP] >UniRef100_UPI00005DC0B2 emb2726 (embryo defective 2726); RNA binding / translation elongation factor n=1 Tax=Arabidopsis thaliana RepID=UPI00005DC0B2 Length = 709 Score = 80.1 bits (196), Expect = 7e-14 Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 24/144 (16%) Frame = +1 Query: 28 HGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE-----------APAAEQAAK------- 150 HGR VL P R G VA + S V AE APA ++ Sbjct: 62 HGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGR 121 Query: 151 -----AIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQ 315 A+K E++ G+ + G V ++ FGAFV+FGA T+GLVH+S+L+ F K+ VV Sbjct: 122 KSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVT 181 Query: 316 PGQKVTVKVLSVDAEKKRVSLELK 387 GQ+V V+++ D E KR+SL ++ Sbjct: 182 IGQEVKVRLVEADIESKRISLTMR 205 [96][TOP] >UniRef100_Q9X7P9 Putative transcriptional accessory protein n=1 Tax=Streptomyces coelicolor RepID=Q9X7P9_STRCO Length = 780 Score = 80.1 bits (196), Expect = 7e-14 Identities = 41/99 (41%), Positives = 58/99 (58%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V Sbjct: 646 KISDLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKV 705 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDRE 453 KV+ VD +KR+SL L+ A E + P R+ Sbjct: 706 KVMDVDIPRKRISLTLRLDDEAAPQGEPKKERGARPPRQ 744 [97][TOP] >UniRef100_Q11LK4 RNA binding S1 n=1 Tax=Chelativorans sp. BNC1 RepID=Q11LK4_MESSB Length = 772 Score = 80.1 bits (196), Expect = 7e-14 Identities = 38/77 (49%), Positives = 56/77 (72%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++D+K G EGTVT V FGAFV+ G + +GLVH+S+LA+ F K+A +VV+ G V V+ Sbjct: 644 IKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLANRFVKDAHEVVKAGDVVKVR 703 Query: 340 VLSVDAEKKRVSLELKS 390 VL VD ++ R+SL ++S Sbjct: 704 VLEVDIKRNRISLSMRS 720 [98][TOP] >UniRef100_Q03E21 Transcriptional accessory protein n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03E21_PEDPA Length = 722 Score = 80.1 bits (196), Expect = 7e-14 Identities = 43/88 (48%), Positives = 53/88 (60%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E PA + + LED+K G E +GTV V +FGAFV+ G +GLVHISKL GF K Sbjct: 631 EMPAPLLRSDVLTLEDLKPGMELQGTVRNVIDFGAFVDIGVKQDGLVHISKLKKGFVKQP 690 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 DVV G V V V SVD E+ R+ L + Sbjct: 691 SDVVAVGDIVKVWVESVDVERHRIQLTM 718 [99][TOP] >UniRef100_C6B3G7 RNA binding S1 domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B3G7_RHILS Length = 769 Score = 80.1 bits (196), Expect = 7e-14 Identities = 40/98 (40%), Positives = 60/98 (61%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 643 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDR 450 +V+ VDA++KR++L +K + A D + R Sbjct: 703 RVVEVDAKRKRIALSMKRDDGSSAPPPRGDSRANQGSR 740 [100][TOP] >UniRef100_A0JTC3 RNA binding S1 domain protein n=1 Tax=Arthrobacter sp. FB24 RepID=A0JTC3_ARTS2 Length = 861 Score = 80.1 bits (196), Expect = 7e-14 Identities = 39/77 (50%), Positives = 54/77 (70%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D++ G EGTVT V FGAFV+ G + +GLVH+S LA+ F + ++VV+ GQ V V Sbjct: 685 KISDLRPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSGQVVRV 744 Query: 337 KVLSVDAEKKRVSLELK 387 KVL D E+KR+SL L+ Sbjct: 745 KVLEADPERKRISLTLR 761 [101][TOP] >UniRef100_Q2B4Z6 Transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B4Z6_9BACI Length = 723 Score = 80.1 bits (196), Expect = 7e-14 Identities = 42/79 (53%), Positives = 54/79 (68%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E +GTV V +FGAFV+ G +GLVHISKL F K+ DVV G VT Sbjct: 643 LKLEDLKPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLRKQFVKHPLDVVSVGDVVT 702 Query: 334 VKVLSVDAEKKRVSLELKS 390 V V S+D++K RV+L + S Sbjct: 703 VWVDSIDSQKGRVALTMLS 721 [102][TOP] >UniRef100_Q0EXI2 Probable transcriptional accessory protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXI2_9PROT Length = 825 Score = 80.1 bits (196), Expect = 7e-14 Identities = 42/96 (43%), Positives = 59/96 (61%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 +L D++EG EG VT V FGAFV+ G + +GLVHIS L F + + VV+ G+ V V Sbjct: 657 ELRDLREGMILEGVVTNVANFGAFVDIGVHQDGLVHISALTHQFIDDPRKVVKTGEVVQV 716 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEP 444 KVL VDA +KR+SL ++ A AE+ + +P Sbjct: 717 KVLEVDARRKRISLTMRMDDVPGAKAEKPEAAAAKP 752 [103][TOP] >UniRef100_C9AW24 RNA binding protein S1 n=2 Tax=Enterococcus casseliflavus RepID=C9AW24_ENTCA Length = 728 Score = 80.1 bits (196), Expect = 7e-14 Identities = 41/88 (46%), Positives = 55/88 (62%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E PA + +ED+K G E +GTV V +FGAFV+ G +GLVH+SKL+ F K+ Sbjct: 634 EMPAPLLRKDVLSMEDLKPGMELKGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHP 693 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 KDVV G VTV + VD +K R+SL + Sbjct: 694 KDVVSVGDVVTVWIEQVDVKKGRISLTM 721 [104][TOP] >UniRef100_C9A7Y3 RNA binding protein S1 n=1 Tax=Enterococcus casseliflavus EC20 RepID=C9A7Y3_ENTCA Length = 728 Score = 80.1 bits (196), Expect = 7e-14 Identities = 41/88 (46%), Positives = 55/88 (62%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E PA + +ED+K G E +GTV V +FGAFV+ G +GLVH+SKL+ F K+ Sbjct: 634 EMPAPLLRKDVLSMEDLKPGMELKGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRSFVKHP 693 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 KDVV G VTV + VD +K R+SL + Sbjct: 694 KDVVSVGDVVTVWIEQVDVKKGRISLTM 721 [105][TOP] >UniRef100_C7QJM7 RNA binding S1 domain protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJM7_CATAD Length = 838 Score = 80.1 bits (196), Expect = 7e-14 Identities = 40/77 (51%), Positives = 54/77 (70%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D++ G EG VT V FGAFV+ G + +GLVHIS L+ F K+ +DVV+PG V V Sbjct: 653 KIGDLQPGMILEGVVTNVAAFGAFVDVGVHQDGLVHISALSKTFVKDPRDVVKPGDVVRV 712 Query: 337 KVLSVDAEKKRVSLELK 387 KVL VDA +KR++L L+ Sbjct: 713 KVLDVDAVRKRIALTLR 729 [106][TOP] >UniRef100_C6MJY8 RNA binding S1 domain protein n=1 Tax=Geobacter sp. M18 RepID=C6MJY8_9DELT Length = 756 Score = 80.1 bits (196), Expect = 7e-14 Identities = 39/85 (45%), Positives = 57/85 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 + + D+KEG +G VT V FGAFV+ G + +GLVH+S+L+ + K+ D V+ G+ V Sbjct: 639 VTIADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLSHRYMKDPNDAVKVGEIVK 698 Query: 334 VKVLSVDAEKKRVSLELKSAVAAEA 408 VKVLS D E+KR+SL +K A +A Sbjct: 699 VKVLSADPERKRISLSIKQAEPEKA 723 [107][TOP] >UniRef100_Q9SZD6 Elongation factor Ts n=1 Tax=Arabidopsis thaliana RepID=Q9SZD6_ARATH Length = 953 Score = 80.1 bits (196), Expect = 7e-14 Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 24/144 (16%) Frame = +1 Query: 28 HGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE-----------APAAEQAAK------- 150 HGR VL P R G VA + S V AE APA ++ Sbjct: 62 HGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGR 121 Query: 151 -----AIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQ 315 A+K E++ G+ + G V ++ FGAFV+FGA T+GLVH+S+L+ F K+ VV Sbjct: 122 KSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVT 181 Query: 316 PGQKVTVKVLSVDAEKKRVSLELK 387 GQ+V V+++ D E KR+SL ++ Sbjct: 182 IGQEVKVRLVEADIESKRISLTMR 205 [108][TOP] >UniRef100_Q93ZG6 AT4g29060/F19B15_90 n=1 Tax=Arabidopsis thaliana RepID=Q93ZG6_ARATH Length = 455 Score = 80.1 bits (196), Expect = 7e-14 Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 24/144 (16%) Frame = +1 Query: 28 HGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE-----------APAAEQAAK------- 150 HGR VL P R G VA + S V AE APA ++ Sbjct: 62 HGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGR 121 Query: 151 -----AIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQ 315 A+K E++ G+ + G V ++ FGAFV+FGA T+GLVH+S+L+ F K+ VV Sbjct: 122 KSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVT 181 Query: 316 PGQKVTVKVLSVDAEKKRVSLELK 387 GQ+V V+++ D E KR+SL ++ Sbjct: 182 IGQEVKVRLVEADIESKRISLTMR 205 [109][TOP] >UniRef100_Q5QEA9 Elongation factor Ts n=1 Tax=Arabidopsis thaliana RepID=Q5QEA9_ARATH Length = 710 Score = 80.1 bits (196), Expect = 7e-14 Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 24/144 (16%) Frame = +1 Query: 28 HGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE-----------APAAEQAAK------- 150 HGR VL P R G VA + S V AE APA ++ Sbjct: 62 HGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGR 121 Query: 151 -----AIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQ 315 A+K E++ G+ + G V ++ FGAFV+FGA T+GLVH+S+L+ F K+ VV Sbjct: 122 KSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVT 181 Query: 316 PGQKVTVKVLSVDAEKKRVSLELK 387 GQ+V V+++ D E KR+SL ++ Sbjct: 182 IGQEVKVRLVEADIESKRISLTMR 205 [110][TOP] >UniRef100_Q0WVD2 Elongation factor Ts (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q0WVD2_ARATH Length = 631 Score = 80.1 bits (196), Expect = 7e-14 Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 24/144 (16%) Frame = +1 Query: 28 HGRS-VLRPVRGPAGRRQVAFTGVRPSVRVFAE-----------APAAEQAAK------- 150 HGR VL P R G VA + S V AE APA ++ Sbjct: 62 HGRQFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGR 121 Query: 151 -----AIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQ 315 A+K E++ G+ + G V ++ FGAFV+FGA T+GLVH+S+L+ F K+ VV Sbjct: 122 KSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVT 181 Query: 316 PGQKVTVKVLSVDAEKKRVSLELK 387 GQ+V V+++ D E KR+SL ++ Sbjct: 182 IGQEVKVRLVEADIESKRISLTMR 205 [111][TOP] >UniRef100_UPI0001AF29A2 putative transcription accessory protein n=1 Tax=Streptomyces roseosporus NRRL 11379 RepID=UPI0001AF29A2 Length = 771 Score = 79.7 bits (195), Expect = 9e-14 Identities = 39/77 (50%), Positives = 53/77 (68%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 KL D++ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ +DVV+PG V V Sbjct: 646 KLGDLEPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKPGDIVKV 705 Query: 337 KVLSVDAEKKRVSLELK 387 KV+ VD +KR+SL L+ Sbjct: 706 KVMDVDVPRKRISLTLR 722 [112][TOP] >UniRef100_UPI00019042F2 probable transcriptional accessory protein (RNA binding S1 domain) n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019042F2 Length = 187 Score = 79.7 bits (195), Expect = 9e-14 Identities = 40/98 (40%), Positives = 60/98 (61%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 61 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 120 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDR 450 +V+ VDA++KR++L +K + A D + R Sbjct: 121 RVVEVDAKRKRIALSMKRDDGSAAPPPRGDSRANQGSR 158 [113][TOP] >UniRef100_UPI00003847A9 COG2183: Transcriptional accessory protein n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003847A9 Length = 784 Score = 79.7 bits (195), Expect = 9e-14 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 5/110 (4%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 L D+K G EG VT V FGAFV+ G + +GLVHIS LA F K+ +VV+PG V VK Sbjct: 659 LNDLKPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVK 718 Query: 340 VLSVDAEKKRVSLELK-----SAVAAEASAEESDDIITEPDREGADATDD 474 VL VD +++R++L ++ + + E + P R+ A DD Sbjct: 719 VLEVDLKRQRIALSMRMDAQPAPARKDEPRREDRRPASPPQRQSASKPDD 768 [114][TOP] >UniRef100_Q5QUM6 Transcriptional accessory protein n=1 Tax=Idiomarina loihiensis RepID=Q5QUM6_IDILO Length = 776 Score = 79.7 bits (195), Expect = 9e-14 Identities = 41/90 (45%), Positives = 57/90 (63%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+K G EG VT V FGAF++ G + +GLVHIS LA F + ++VV+ G V V Sbjct: 644 KVSDLKPGMLLEGVVTNVANFGAFIDVGVHQDGLVHISALADKFVSDPREVVKAGDIVKV 703 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESD 426 KVL VD E+KR+ L ++ + A A+ SD Sbjct: 704 KVLEVDIERKRIGLTMRLSDEAPANTAGSD 733 [115][TOP] >UniRef100_Q0AXA2 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXA2_SYNWW Length = 687 Score = 79.7 bits (195), Expect = 9e-14 Identities = 41/100 (41%), Positives = 61/100 (61%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 I +E +EG EGTV + FGAFV A +GLVHIS+LA+ + +DVVQ +K+ Sbjct: 588 IVMEKFQEGDIIEGTVVRIAPFGAFVEIEAGVDGLVHISQLANHRVEKPEDVVQVNEKIK 647 Query: 334 VKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDRE 453 +K+LS+D E+KR+ L LK A+ + E D + + + E Sbjct: 648 IKILSIDPEEKRIGLSLKEALNEMENQEVQDYMEKQEENE 687 Score = 59.7 bits (143), Expect = 1e-07 Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%) Frame = +1 Query: 133 AEQAAKAIKL--EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKD 306 AE+ AK K E+++EG +G + + ++GAF++ G GL+H+S++A D Sbjct: 494 AEEKAKQKKQFWEEIEEGQVRKGRIKRLVDYGAFIDLGGY-EGLLHVSEIAHTRIDQPSD 552 Query: 307 VVQPGQKVTVKVLSVDAEKKRVSLELK 387 V+Q G+++ V +L++D EK+RVSL K Sbjct: 553 VLQEGEEIDVYILALDREKERVSLSRK 579 [116][TOP] >UniRef100_C1F2W2 S1 RNA binding domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2W2_ACIC5 Length = 753 Score = 79.7 bits (195), Expect = 9e-14 Identities = 44/107 (41%), Positives = 65/107 (60%) Frame = +1 Query: 124 APAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAK 303 AP+ + K I D+KEG EG VT V +FGAFV+ G + +GLVHIS+L++ F K Sbjct: 631 APSFLEGVKEIT--DLKEGMVLEGVVTNVTKFGAFVDVGVHQDGLVHISELSNRFIKEPS 688 Query: 304 DVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEP 444 + V+ GQ V VKVLS DA+ KR++L +++ + A + +P Sbjct: 689 EAVKAGQIVRVKVLSADAKTKRIALSMRALMEPIGRAPSKAKPVPKP 735 [117][TOP] >UniRef100_B2I0M7 Transcriptional accessory protein n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I0M7_ACIBC Length = 782 Score = 79.7 bits (195), Expect = 9e-14 Identities = 39/87 (44%), Positives = 58/87 (66%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 635 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 694 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAE 417 +V+ VD E+ RV+L +++ AA A+ Sbjct: 695 RVMQVDVERNRVNLSMRAEGAAPVKAQ 721 [118][TOP] >UniRef100_B1VTW9 Putative transcription accessory protein n=1 Tax=Streptomyces griseus subsp. griseus NBRC 13350 RepID=B1VTW9_STRGG Length = 843 Score = 79.7 bits (195), Expect = 9e-14 Identities = 39/77 (50%), Positives = 53/77 (68%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 KL D++ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ +DVV+PG V V Sbjct: 679 KLGDLEPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSKTFVKDPRDVVKPGDIVKV 738 Query: 337 KVLSVDAEKKRVSLELK 387 KV+ VD +KR+SL L+ Sbjct: 739 KVMDVDVPRKRISLTLR 755 [119][TOP] >UniRef100_B1VG79 Putative transcriptional accessory protein n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VG79_CORU7 Length = 787 Score = 79.7 bits (195), Expect = 9e-14 Identities = 42/97 (43%), Positives = 59/97 (60%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RPS + + A E K+ DV+ G EGTVT V FGAFV+ G + +GLVH+S + Sbjct: 624 RPSFKTASLAEGVE------KVSDVRPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAM 677 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 A F K+ +VV GQ V VKV+ VD +++R+ L L+ Sbjct: 678 ADRFVKDPHEVVHSGQVVKVKVMDVDVDRQRIGLSLR 714 [120][TOP] >UniRef100_B0VPD0 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii SDF RepID=B0VPD0_ACIBS Length = 794 Score = 79.7 bits (195), Expect = 9e-14 Identities = 39/87 (44%), Positives = 58/87 (66%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 647 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAE 417 +V+ VD E+ RV+L +++ AA A+ Sbjct: 707 RVMQVDVERNRVNLSMRAEGAAPVKAQ 733 [121][TOP] >UniRef100_B7GVL1 Protein tex n=3 Tax=Acinetobacter baumannii RepID=B7GVL1_ACIB3 Length = 782 Score = 79.7 bits (195), Expect = 9e-14 Identities = 39/87 (44%), Positives = 58/87 (66%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 635 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 694 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAE 417 +V+ VD E+ RV+L +++ AA A+ Sbjct: 695 RVMQVDVERNRVNLSMRAEGAAPVKAQ 721 [122][TOP] >UniRef100_A3M9M3 Putative RNA binding protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M9M3_ACIBT Length = 561 Score = 79.7 bits (195), Expect = 9e-14 Identities = 39/87 (44%), Positives = 58/87 (66%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 414 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 473 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAE 417 +V+ VD E+ RV+L +++ AA A+ Sbjct: 474 RVMQVDVERNRVNLSMRAEGAAPVKAQ 500 [123][TOP] >UniRef100_A1R3T9 Putative transcriptional accessory protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R3T9_ARTAT Length = 818 Score = 79.7 bits (195), Expect = 9e-14 Identities = 38/77 (49%), Positives = 54/77 (70%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+K G EGTVT V FGAFV+ G + +GLVH+S L++ F + +++V+ GQ V V Sbjct: 652 KISDLKPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALSNKFVSDPREIVKSGQVVRV 711 Query: 337 KVLSVDAEKKRVSLELK 387 KVL D E+KR+SL L+ Sbjct: 712 KVLEADPERKRISLTLR 728 [124][TOP] >UniRef100_D0CCK6 Transcriptional accessory protein n=1 Tax=Acinetobacter baumannii ATCC 19606 RepID=D0CCK6_ACIBA Length = 794 Score = 79.7 bits (195), Expect = 9e-14 Identities = 39/87 (44%), Positives = 58/87 (66%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 647 EVAQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 706 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAE 417 +V+ VD E+ RV+L +++ AA A+ Sbjct: 707 RVMQVDVERNRVNLSMRAEGAAPVKAQ 733 [125][TOP] >UniRef100_C8Q161 Protein tex n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q161_9GAMM Length = 849 Score = 79.7 bits (195), Expect = 9e-14 Identities = 41/87 (47%), Positives = 55/87 (63%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 L D+ EG EG VT V FG FV+ G + +GLVHIS++ + F + + V+PG VTV+ Sbjct: 689 LNDLTEGMTLEGVVTNVTSFGCFVDVGVHQDGLVHISEMGNEFIADPLNHVKPGDIVTVR 748 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEE 420 V+SVDAE+KRV +KS A A E Sbjct: 749 VISVDAERKRVGFSMKSDTPMAAKAAE 775 [126][TOP] >UniRef100_C6NZN2 RNA binding S1 domain protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZN2_9GAMM Length = 801 Score = 79.7 bits (195), Expect = 9e-14 Identities = 46/98 (46%), Positives = 61/98 (62%), Gaps = 7/98 (7%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 +L+D++ G EG VT V FGAFV+ G + +GLVHIS LA F K+ VV+ GQ V V Sbjct: 672 ELKDLEPGMILEGVVTNVAAFGAFVDIGVHQDGLVHISALADKFVKDPHSVVKAGQIVKV 731 Query: 337 KVLSVDAEKKRVSLELKSAVAA-------EASAEESDD 429 KVL VD ++KRVSL ++ AA EA E+ D+ Sbjct: 732 KVLEVDVKRKRVSLTMRLTDAAGQAGGKPEAQREQRDN 769 [127][TOP] >UniRef100_C4DR25 Transcriptional accessory protein n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DR25_9ACTO Length = 783 Score = 79.7 bits (195), Expect = 9e-14 Identities = 40/91 (43%), Positives = 57/91 (62%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 KL D+ G EGTVT V FGAFV+ G + +GLVHIS +++ + + +DV +PG V V Sbjct: 646 KLSDLAPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHISAMSNDYVADPRDVAKPGDIVKV 705 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDD 429 +VL VD +KR+SL ++ AEA + D Sbjct: 706 RVLEVDEARKRISLTMRLQDKAEAKPPKQSD 736 [128][TOP] >UniRef100_B5D203 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5D203_9BACE Length = 712 Score = 79.7 bits (195), Expect = 9e-14 Identities = 38/76 (50%), Positives = 51/76 (67%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 L+D++EG E G VT + FG FV+ G NGLVH+S+LA F N DVV+ Q V VK Sbjct: 633 LDDLQEGMELPGIVTNITNFGCFVDIGIKENGLVHVSQLADRFVSNPADVVRIHQHVRVK 692 Query: 340 VLSVDAEKKRVSLELK 387 V+S+D E+KR+ L +K Sbjct: 693 VMSIDHERKRIQLTMK 708 [129][TOP] >UniRef100_UPI0001BB9A2D transcriptional accessory protein n=1 Tax=Acinetobacter junii SH205 RepID=UPI0001BB9A2D Length = 785 Score = 79.3 bits (194), Expect = 1e-13 Identities = 39/86 (45%), Positives = 58/86 (67%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + VV+PGQ V V Sbjct: 635 EVSQLTEGMQLEGVVTNVTNFGAFVDVGVHQDGLVHISELANEFVSDPHKVVKPGQIVQV 694 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASA 414 +V+ VD E+ RV+L +++ +A A A Sbjct: 695 RVMQVDVERNRVNLSMRAEGSAPAKA 720 [130][TOP] >UniRef100_UPI0001B53EE5 transcription accessory protein n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B53EE5 Length = 1218 Score = 79.3 bits (194), Expect = 1e-13 Identities = 39/77 (50%), Positives = 53/77 (68%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 KL D++ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ ++VV+PG V V Sbjct: 626 KLSDLEPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALSREFVKDPREVVKPGDIVKV 685 Query: 337 KVLSVDAEKKRVSLELK 387 KVL VD +KR+SL L+ Sbjct: 686 KVLDVDLPRKRISLTLR 702 [131][TOP] >UniRef100_UPI0001B4CC56 transcription accessory protein n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B4CC56 Length = 742 Score = 79.3 bits (194), Expect = 1e-13 Identities = 38/77 (49%), Positives = 52/77 (67%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V Sbjct: 646 KIADLSSGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKV 705 Query: 337 KVLSVDAEKKRVSLELK 387 KVL VD +KR+SL L+ Sbjct: 706 KVLDVDVPRKRISLTLR 722 [132][TOP] >UniRef100_UPI00019DD834 SSU ribosomal protein S1P n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=UPI00019DD834 Length = 302 Score = 79.3 bits (194), Expect = 1e-13 Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Frame = +1 Query: 76 QVAFTGVRPSVRVFAEAPAAEQAAKAIKL----------EDVKEGSEYEGTVTTVEEFGA 225 +V G R VRV P A + + +IK + + G +G V V +FGA Sbjct: 148 EVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVRRVVDFGA 207 Query: 226 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV--- 396 FV GLVH+S++++ DV+QPGQ+VTV+VLSVD E+KR+SL ++ + Sbjct: 208 FVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSSQPR 267 Query: 397 AAEASAEESDDIITEPDREGA 459 + D TEP EGA Sbjct: 268 GGQGRGGRRDRRPTEPRNEGA 288 Score = 70.5 bits (171), Expect = 6e-11 Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 1/88 (1%) Frame = +1 Query: 136 EQAAKAIKL-EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVV 312 E A+A KL E++K G EGTV + +FGAFV+ G +GLVHIS+L+ + +VV Sbjct: 92 ESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGG-ADGLVHISELSFSHVNHPSEVV 150 Query: 313 QPGQKVTVKVLSVDAEKKRVSLELKSAV 396 + G +V V+VL VD E R+SL +K+A+ Sbjct: 151 REGDRVKVRVLRVDPEAGRISLSIKAAL 178 [133][TOP] >UniRef100_UPI00019083B0 probable transcriptional accessory protein (RNA binding S1 domain) n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI00019083B0 Length = 195 Score = 79.3 bits (194), Expect = 1e-13 Identities = 39/90 (43%), Positives = 58/90 (64%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 103 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 162 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESD 426 +V+ VDA++KR++L +K + A D Sbjct: 163 RVVEVDAKRKRIALSMKRDDGSAAPPPRGD 192 [134][TOP] >UniRef100_Q74GL1 S1 RNA binding domain protein n=1 Tax=Geobacter sulfurreducens RepID=Q74GL1_GEOSL Length = 761 Score = 79.3 bits (194), Expect = 1e-13 Identities = 42/105 (40%), Positives = 60/105 (57%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+KEG +G VT V FGAFV+ G + +GLVH+S L+ F K+ + V+ GQ V V Sbjct: 643 EIGDLKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAVRVGQVVQV 702 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATD 471 KVLSVD ++KR+SL ++ A A E R+ D Sbjct: 703 KVLSVDVQRKRISLSIREAAPGGAPRSTEKPARKEEPRKTGGGLD 747 [135][TOP] >UniRef100_Q39Z96 RNA binding S1 n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39Z96_GEOMG Length = 757 Score = 79.3 bits (194), Expect = 1e-13 Identities = 38/84 (45%), Positives = 57/84 (67%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 +L D+KEG +G VT V FGAFV+ G + +GLVH+S L++ F K+ + V+ G+ V V Sbjct: 642 ELSDLKEGMVLQGVVTNVTAFGAFVDIGVHQDGLVHVSHLSTRFVKDPNEAVRVGEVVKV 701 Query: 337 KVLSVDAEKKRVSLELKSAVAAEA 408 KVL+VD +KR+SL ++ A+ A Sbjct: 702 KVLAVDVPRKRISLSIREAMEGGA 725 [136][TOP] >UniRef100_Q21CQ2 RNA binding S1 n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21CQ2_RHOPB Length = 782 Score = 79.3 bits (194), Expect = 1e-13 Identities = 42/97 (43%), Positives = 58/97 (59%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 L+D+K G EG VT V FGAFV+ G + +GLVHIS ++ F K+ ++VV+PG V VK Sbjct: 647 LKDLKPGMVLEGAVTNVAAFGAFVDIGVHQDGLVHISAMSRSFIKDPREVVKPGDIVKVK 706 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDR 450 VL VD +KR++L L+ A A+ P R Sbjct: 707 VLEVDVARKRIALSLRLDDEVGAKADRVQAAPRGPSR 743 [137][TOP] >UniRef100_Q1DCH5 S1 RNA binding domain protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DCH5_MYXXD Length = 783 Score = 79.3 bits (194), Expect = 1e-13 Identities = 36/77 (46%), Positives = 58/77 (75%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 LEDVKEG +G VT V FGAFV+ G + +GLVH+S++++ F K+ +VV+ G ++TV+ Sbjct: 637 LEDVKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSQISTRFVKDPSEVVKVGDRLTVR 696 Query: 340 VLSVDAEKKRVSLELKS 390 VL+VD +KR++L +++ Sbjct: 697 VLTVDLARKRLALSVRA 713 [138][TOP] >UniRef100_B3PRI3 Probable transcriptional accessory protein (RNA binding S1 domain) n=1 Tax=Rhizobium etli CIAT 652 RepID=B3PRI3_RHIE6 Length = 769 Score = 79.3 bits (194), Expect = 1e-13 Identities = 39/90 (43%), Positives = 58/90 (64%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 643 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESD 426 +V+ VDA++KR++L +K + A D Sbjct: 703 RVVEVDAKRKRIALSMKRDDGSAAPPPRGD 732 [139][TOP] >UniRef100_A7NJ51 RNA binding S1 domain protein n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NJ51_ROSCS Length = 503 Score = 79.3 bits (194), Expect = 1e-13 Identities = 41/79 (51%), Positives = 52/79 (65%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 KL ++ G EGTVT + FG FV+ G +GLVH+S+LA G + A+DVVQ GQ T Sbjct: 231 KLAALRVGDNVEGTVTGLAPFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTF 290 Query: 337 KVLSVDAEKKRVSLELKSA 393 KVL VDAE R+SL L+ A Sbjct: 291 KVLEVDAEGARISLSLRRA 309 Score = 73.2 bits (178), Expect = 9e-12 Identities = 35/83 (42%), Positives = 55/83 (66%) Frame = +1 Query: 139 QAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQP 318 +A + KL+ +++G EGT++ + FGAFV+ G +GLVHIS+L++ +D V+ Sbjct: 308 RAQRGQKLQQLEKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNARVARVEDAVKV 367 Query: 319 GQKVTVKVLSVDAEKKRVSLELK 387 G KV V+VL VD + KR+SL L+ Sbjct: 368 GDKVQVRVLDVDPQSKRISLSLR 390 Score = 67.8 bits (164), Expect = 4e-10 Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 3/112 (2%) Frame = +1 Query: 61 PAGRRQVAFTGVRPSVRVFA---EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFV 231 P G +VA P+ A +APA + +++D+ G E EG VT++ +G FV Sbjct: 97 PTGSAEVAPEAAAPAGTAEAASYQAPAEAPTGRPRRVKDLAPGMELEGRVTSIALYGIFV 156 Query: 232 NFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 + G +GLVHIS+++ ++ D+V+ G V V+V SV+ + +R+SL ++ Sbjct: 157 DIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRRISLTMR 208 [140][TOP] >UniRef100_A4WPJ7 RNA binding S1 domain protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WPJ7_RHOS5 Length = 772 Score = 79.3 bits (194), Expect = 1e-13 Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 646 EISDLKVGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 705 Query: 337 KVLSVDAEKKRVSLEL-KSAVAAEASAEESDDIITEPDREG 456 +V+ VD +KR+ L + K + A A A E +EP R+G Sbjct: 706 RVVEVDVARKRIGLTMRKDSADARAQASERK---SEPPRKG 743 [141][TOP] >UniRef100_A1TSP0 RNA binding S1 domain protein n=1 Tax=Acidovorax citrulli AAC00-1 RepID=A1TSP0_ACIAC Length = 788 Score = 79.3 bits (194), Expect = 1e-13 Identities = 37/76 (48%), Positives = 56/76 (73%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 + D+KEG EGTV+ V +FGAFV+ G + +GLVH+S+L+ F ++A+++V+ G V VK Sbjct: 658 IADLKEGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVQDAREIVKTGDIVKVK 717 Query: 340 VLSVDAEKKRVSLELK 387 VL VD +KR+SL +K Sbjct: 718 VLEVDPVRKRISLTMK 733 [142][TOP] >UniRef100_C8WX93 RNA binding S1 domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WX93_ALIAC Length = 385 Score = 79.3 bits (194), Expect = 1e-13 Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Frame = +1 Query: 76 QVAFTGVRPSVRVFAEAPAAEQAAKAIKL----------EDVKEGSEYEGTVTTVEEFGA 225 +V G R VRV P A + + +IK + + G +G V V +FGA Sbjct: 231 EVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVRRVVDFGA 290 Query: 226 FVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV--- 396 FV GLVH+S++++ DV+QPGQ+VTV+VLSVD E+KR+SL ++ + Sbjct: 291 FVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSSQPR 350 Query: 397 AAEASAEESDDIITEPDREGA 459 + D TEP EGA Sbjct: 351 GGQGRGGRRDRRPTEPRNEGA 371 Score = 70.5 bits (171), Expect = 6e-11 Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 1/88 (1%) Frame = +1 Query: 136 EQAAKAIKL-EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVV 312 E A+A KL E++K G EGTV + +FGAFV+ G +GLVHIS+L+ + +VV Sbjct: 175 ESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGG-ADGLVHISELSFSHVNHPSEVV 233 Query: 313 QPGQKVTVKVLSVDAEKKRVSLELKSAV 396 + G +V V+VL VD E R+SL +K+A+ Sbjct: 234 REGDRVKVRVLRVDPEAGRISLSIKAAL 261 [143][TOP] >UniRef100_C6XX62 RNA binding S1 domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XX62_PEDHD Length = 775 Score = 79.3 bits (194), Expect = 1e-13 Identities = 38/88 (43%), Positives = 57/88 (64%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G + G VT + FGAFV+ G + +GLVH S+++ F NA DVV+ QKV V Sbjct: 630 EISDLKVGMKLPGIVTNITNFGAFVDIGVHQDGLVHTSQISDKFVANAADVVKVHQKVEV 689 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEE 420 V+ VD +KR+SL +K V A+ +E+ Sbjct: 690 TVVEVDVARKRISLSMKKEVGAKPKSEQ 717 [144][TOP] >UniRef100_B5KA30 RNA binding S1 domain protein n=1 Tax=Octadecabacter antarcticus 238 RepID=B5KA30_9RHOB Length = 773 Score = 79.3 bits (194), Expect = 1e-13 Identities = 39/97 (40%), Positives = 57/97 (58%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 + D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ D+V+ G V V+ Sbjct: 644 ITDLKSGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHDIVKAGDVVRVR 703 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDR 450 V +D +KR++L ++ S E D +P R Sbjct: 704 VTEIDVPRKRIALSMRKDGGDAPSPRERDSKKPQPAR 740 [145][TOP] >UniRef100_B4X3W4 S1 RNA binding domain protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X3W4_9GAMM Length = 791 Score = 79.3 bits (194), Expect = 1e-13 Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 5/92 (5%) Frame = +1 Query: 127 PAAEQAAKAIK-----LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFT 291 P E A A+K L+D+K+ EGTVT V FGAFV+ G + +GLVH+S LA F Sbjct: 628 PRPEFKAAALKEGVETLKDLKQSMILEGTVTNVTNFGAFVDIGVHQDGLVHVSALADKFV 687 Query: 292 KNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 ++ VV PG V VKVL VD ++KR+SL ++ Sbjct: 688 EDPHQVVAPGDIVKVKVLDVDLDRKRISLTMR 719 [146][TOP] >UniRef100_B4DC92 RNA binding S1 domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC92_9BACT Length = 770 Score = 79.3 bits (194), Expect = 1e-13 Identities = 38/80 (47%), Positives = 55/80 (68%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ED+K G + G VT V FGAFV+ G + +GLVHIS+++ F KN DV++ GQ+V Sbjct: 640 KMEDLKVGLKLPGIVTNVTAFGAFVDIGVHQDGLVHISQMSDEFVKNPADVLKVGQRVQA 699 Query: 337 KVLSVDAEKKRVSLELKSAV 396 V+ VD +KR++L LK+ V Sbjct: 700 TVMEVDMARKRIALSLKTKV 719 [147][TOP] >UniRef100_A6CAB9 Polynucleotide phosphorylase/polyadenylase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CAB9_9PLAN Length = 711 Score = 79.3 bits (194), Expect = 1e-13 Identities = 39/97 (40%), Positives = 64/97 (65%) Frame = +1 Query: 163 EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKV 342 E+++ G Y+G V++++EFGAF+ +GL HIS+L+ GF K+ D+ + G ++ VKV Sbjct: 617 EEIRVGRIYDGVVSSIKEFGAFIEIAPGKDGLCHISELSDGFVKSVSDICKMGDRLQVKV 676 Query: 343 LSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDRE 453 ++VD ++ RV L K AV AE + E + D+ TE + E Sbjct: 677 IAVD-DQNRVKLSRK-AVLAEQAGESNGDVDTEAEEE 711 [148][TOP] >UniRef100_UPI0001B4E1EC transcriptional accessory protein n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4E1EC Length = 794 Score = 79.0 bits (193), Expect = 2e-13 Identities = 38/77 (49%), Positives = 52/77 (67%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V Sbjct: 649 KISDLSAGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVKV 708 Query: 337 KVLSVDAEKKRVSLELK 387 KVL VD +KR+SL L+ Sbjct: 709 KVLDVDIPRKRISLTLR 725 [149][TOP] >UniRef100_UPI0001905DA4 probable transcriptional accessory protein (RNA binding S1 domain) n=1 Tax=Rhizobium etli GR56 RepID=UPI0001905DA4 Length = 256 Score = 79.0 bits (193), Expect = 2e-13 Identities = 38/90 (42%), Positives = 58/90 (64%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 130 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 189 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESD 426 +V+ VDA++KR+ L ++ ++ S D Sbjct: 190 RVVEVDAKRKRIGLSMRRDDGSQPSQPRGD 219 [150][TOP] >UniRef100_Q8YLP7 Alr5249 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YLP7_ANASP Length = 719 Score = 79.0 bits (193), Expect = 2e-13 Identities = 39/78 (50%), Positives = 56/78 (71%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D++EG E EG VT V FGAFV+ G + +GLVHIS+LA F + K VV+ GQ V V Sbjct: 639 EITDLQEGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKKVVKVGQVVKV 698 Query: 337 KVLSVDAEKKRVSLELKS 390 +VL V+A+ +R+SL +K+ Sbjct: 699 RVLEVNAKLRRISLSMKA 716 [151][TOP] >UniRef100_Q2W1Q4 TEX protein n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W1Q4_MAGSA Length = 787 Score = 79.0 bits (193), Expect = 2e-13 Identities = 43/100 (43%), Positives = 60/100 (60%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 L D+K G EG VT V FGAFV+ G + +GLVHIS LA F K+ +VV+PG V VK Sbjct: 659 LNDLKPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVK 718 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGA 459 VL VD ++ R++L ++ + A+ + DD +R A Sbjct: 719 VLEVDIKRSRIALSMR--MDAQPAPARKDDAPRRDERRPA 756 [152][TOP] >UniRef100_Q07UL0 RNA binding S1 domain protein n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07UL0_RHOP5 Length = 784 Score = 79.0 bits (193), Expect = 2e-13 Identities = 43/100 (43%), Positives = 60/100 (60%) Frame = +1 Query: 130 AAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDV 309 AAE L+D+K G EG VT V FGAFV+ G + +GLVHIS ++ F K+ ++V Sbjct: 639 AAEFKEGVETLKDLKVGMILEGAVTNVAAFGAFVDIGVHQDGLVHISAMSKTFIKDPREV 698 Query: 310 VQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDD 429 V+PG V VKVL VD +KR++L L+ A ++ D Sbjct: 699 VKPGDIVKVKVLEVDVARKRIALTLRLDDEVGAKSDRKPD 738 [153][TOP] >UniRef100_C3M8T0 Putative RNA-binding domain transcriptional regulator n=1 Tax=Rhizobium sp. NGR234 RepID=C3M8T0_RHISN Length = 766 Score = 79.0 bits (193), Expect = 2e-13 Identities = 38/86 (44%), Positives = 56/86 (65%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++D+K G + EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V+ Sbjct: 642 IKDLKVGMQLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVRVR 701 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAE 417 V VD +KR+ L ++ AE + E Sbjct: 702 VTEVDVARKRIGLSMRKDGGAETARE 727 [154][TOP] >UniRef100_Q1ZC98 Putative uncharacterized protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZC98_9GAMM Length = 723 Score = 79.0 bits (193), Expect = 2e-13 Identities = 37/77 (48%), Positives = 56/77 (72%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+ E +G +T V FGAFV+ G + +GL+H+S+LA+ F K+ +VV+ GQ V V Sbjct: 641 KISDLYTDMEIQGVITNVTSFGAFVDIGVHQDGLIHLSQLANKFVKDPFEVVKTGQIVQV 700 Query: 337 KVLSVDAEKKRVSLELK 387 +VLSVD+E+KR+SL L+ Sbjct: 701 RVLSVDSERKRISLSLR 717 [155][TOP] >UniRef100_C9PPH0 YhgF like protein n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPH0_9PAST Length = 771 Score = 79.0 bits (193), Expect = 2e-13 Identities = 40/107 (37%), Positives = 63/107 (58%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVHIS L+ F ++ VV+ G V V Sbjct: 644 EISDLKAGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKV 703 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDD 477 KVL VD +KR++L ++ +A +++++D ++ R D Sbjct: 704 KVLEVDVPRKRIALTMRLEESAVKNSDKTDRTLSTKSRSNPSTKGRD 750 [156][TOP] >UniRef100_C2Z291 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=2 Tax=Bacillus cereus RepID=C2Z291_BACCE Length = 722 Score = 79.0 bits (193), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [157][TOP] >UniRef100_C2C0H7 S1 domain RNA-binding protein n=1 Tax=Listeria grayi DSM 20601 RepID=C2C0H7_LISGR Length = 726 Score = 79.0 bits (193), Expect = 2e-13 Identities = 40/75 (53%), Positives = 50/75 (66%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +K+ED+K G E +GTV V +FGAFV+ G +GLVHISKL+ F KN DVV G VT Sbjct: 642 VKMEDLKPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFIKNPMDVVSVGDIVT 701 Query: 334 VKVLSVDAEKKRVSL 378 V V VD K R++L Sbjct: 702 VWVEEVDLNKNRIAL 716 [158][TOP] >UniRef100_C0DY06 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DY06_EIKCO Length = 758 Score = 79.0 bits (193), Expect = 2e-13 Identities = 41/103 (39%), Positives = 68/103 (66%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D++ G EG V+ V FGAFV+ G + +GLVHIS L++ F ++ ++VV+ G V V Sbjct: 633 EISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKV 692 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADA 465 KVL VDA +KR++L ++ + EA AE+ + E ++ GA++ Sbjct: 693 KVLEVDAARKRIALTMR--LDDEAGAEKHGKRLPETEKRGANS 733 [159][TOP] >UniRef100_A7VC71 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VC71_9CLOT Length = 716 Score = 79.0 bits (193), Expect = 2e-13 Identities = 40/90 (44%), Positives = 58/90 (64%) Frame = +1 Query: 118 AEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 297 +E P ++++D+KEG +GTV V +FGAFV+ G + +GLVHIS+++ F K+ Sbjct: 623 SEMPQPILRGDILEMKDLKEGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKH 682 Query: 298 AKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 DVV G VTVKV+ VD KKR+ L +K Sbjct: 683 PLDVVSVGDIVTVKVMGVDLAKKRIQLTMK 712 [160][TOP] >UniRef100_A4EBC2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBC2_9ACTN Length = 442 Score = 79.0 bits (193), Expect = 2e-13 Identities = 39/88 (44%), Positives = 59/88 (67%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 +AP + A+ ++D++ G E +GTV V +FGAFV+ G + +GLVHISKLA+ F K+ Sbjct: 351 DAPEVVFSRSALSIDDLEPGMELKGTVRNVVDFGAFVDVGVHQDGLVHISKLANRFVKHP 410 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 DVV+ G V V V VD ++K++SL + Sbjct: 411 SDVVRVGDTVKVWVEKVDRDRKKISLTM 438 [161][TOP] >UniRef100_Q7SB69 Putative uncharacterized protein n=1 Tax=Neurospora crassa RepID=Q7SB69_NEUCR Length = 1774 Score = 79.0 bits (193), Expect = 2e-13 Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 2/111 (1%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNF--GANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 + D+KEG G V VEEFGAF++ AN +GL H S+++ K+A+ + + G KV Sbjct: 1282 ISDLKEGQTITGRVRKVEEFGAFIDIDGSANLSGLCHRSEMSDKTVKDARKLYEEGDKVK 1341 Query: 334 VKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDDDEDV 486 KVL VD KR++L LK + E E+ D + E D E ++ D DED+ Sbjct: 1342 AKVLKVDITAKRINLGLKPSYFGEQDDEDEMD-VDEEDAEDSEGDDSDEDM 1391 [162][TOP] >UniRef100_C6RQH0 Transcriptional accessory protein n=2 Tax=Acinetobacter radioresistens RepID=C6RQH0_ACIRA Length = 785 Score = 78.6 bits (192), Expect = 2e-13 Identities = 38/81 (46%), Positives = 56/81 (69%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++ + EG + EG VT V FGAFV+ G + +GLVHIS+LA+ F + +V+PGQ V V+ Sbjct: 636 VKQLTEGMQLEGVVTNVTNFGAFVDIGVHQDGLVHISELANEFVSDPHKIVKPGQIVQVR 695 Query: 340 VLSVDAEKKRVSLELKSAVAA 402 V+ VDAE+ RV+L ++ AA Sbjct: 696 VIQVDAERNRVNLSMRPEGAA 716 [163][TOP] >UniRef100_UPI0001BB068E Tex-like protein protein-like protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=UPI0001BB068E Length = 815 Score = 78.6 bits (192), Expect = 2e-13 Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E A AA K+ D++ G EG VT V FGAFV+ G + +GLVH+S +A+ F + Sbjct: 628 EFKTATFAAGIEKVSDLRPGMILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANRFVSDP 687 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRV--SLELKSAVAAEASAEESDDIITEPDREGADATDD 474 ++VV+ G VTVKV+ VD E+KR+ SL L A ++ S +R G TDD Sbjct: 688 REVVKSGDIVTVKVMEVDVERKRIGLSLRLDDEPGAPSTGGRSG---RREERGGGPRTDD 744 [164][TOP] >UniRef100_Q81IT3 Transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus ATCC 14579 RepID=Q81IT3_BACCR Length = 724 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 644 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 703 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 704 VWVDDIDTKKGRVALSM 720 [165][TOP] >UniRef100_Q60A39 S1 RNA binding domain protein n=1 Tax=Methylococcus capsulatus RepID=Q60A39_METCA Length = 735 Score = 78.6 bits (192), Expect = 2e-13 Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 3/102 (2%) Frame = +1 Query: 163 EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKV 342 +D++ G EG VT V FGAFV+ G + +GLVHIS LA F ++ ++VV+ G V VKV Sbjct: 613 KDLEPGMRLEGVVTNVTNFGAFVDVGVHQDGLVHISHLADRFVRDPREVVKAGDVVQVKV 672 Query: 343 LSVDAEKKRVSLELKSAVA---AEASAEESDDIITEPDREGA 459 L VD ++R++L ++S A AE E+ + +P R A Sbjct: 673 LEVDIPRRRIALSMRSDAAKGEAEPPRRETGETAGKPRRRAA 714 [166][TOP] >UniRef100_Q47TS6 RNA binding S1:Resolvase, RNase H-like fold n=1 Tax=Thermobifida fusca YX RepID=Q47TS6_THEFY Length = 777 Score = 78.6 bits (192), Expect = 2e-13 Identities = 42/105 (40%), Positives = 61/105 (58%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 + D++ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V VK Sbjct: 646 ITDLEPGMVLEGVVTNVAAFGAFVDVGVHHDGLVHVSAMSKSFVKDPRDVVKPGDIVRVK 705 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDD 474 VL VD +KR+SL L+ + + E++ E GA D Sbjct: 706 VLDVDVRRKRISLTLRLDDEVDQRSGENNRSGGERRERGAPRRGD 750 [167][TOP] >UniRef100_Q3MCX9 RNA binding S1 n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3MCX9_ANAVT Length = 719 Score = 78.6 bits (192), Expect = 2e-13 Identities = 39/78 (50%), Positives = 55/78 (70%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D++EG E EG VT V FGAFV+ G + +GLVHIS+L F + K VV+ GQ V V Sbjct: 639 EITDLQEGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLTDRFVDDPKKVVKVGQVVKV 698 Query: 337 KVLSVDAEKKRVSLELKS 390 +VL V+A+ KR+SL +K+ Sbjct: 699 RVLEVNAKLKRISLSMKA 716 [168][TOP] >UniRef100_Q1WSR3 Transcription accessory protein n=1 Tax=Lactobacillus salivarius UCC118 RepID=Q1WSR3_LACS1 Length = 723 Score = 78.6 bits (192), Expect = 2e-13 Identities = 38/77 (49%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +K+ED+K G + EGTV V +FGAFV+ G +GLVH+SKL+ + N +DVV GQ VT Sbjct: 642 LKIEDLKAGMQLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVT 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V VD +KR+ L + Sbjct: 702 VWVEDVDLNRKRIQLTM 718 [169][TOP] >UniRef100_Q01R15 RNA binding S1 domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01R15_SOLUE Length = 749 Score = 78.6 bits (192), Expect = 2e-13 Identities = 37/82 (45%), Positives = 58/82 (70%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D++ G EG VT V FGAF++ G + +GLVH+S+LA+ F K+A +VV+ GQ V V Sbjct: 636 EIADLQPGMTLEGVVTNVTRFGAFIDVGVHNDGLVHVSQLANRFVKDASEVVKAGQIVKV 695 Query: 337 KVLSVDAEKKRVSLELKSAVAA 402 +V+S D + KR++L +K+ AA Sbjct: 696 QVISADPKTKRIALSMKALDAA 717 [170][TOP] >UniRef100_B7IU35 S1 RNA binding domain protein n=1 Tax=Bacillus cereus G9842 RepID=B7IU35_BACC2 Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [171][TOP] >UniRef100_B7H4P5 S1 RNA binding domain protein n=1 Tax=Bacillus cereus B4264 RepID=B7H4P5_BACC4 Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [172][TOP] >UniRef100_C8NGU9 Histidine triad domain-containing protein n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NGU9_9LACT Length = 751 Score = 78.6 bits (192), Expect = 2e-13 Identities = 40/77 (51%), Positives = 51/77 (66%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +K+ED++ G E EGTV V +FGAFV+ G +GLVHISKL GF K+ DVV G VT Sbjct: 667 LKMEDLQVGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVT 726 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV L + Sbjct: 727 VWVTELDLKKGRVGLSM 743 [173][TOP] >UniRef100_C4EGE5 Transcriptional accessory protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=C4EGE5_STRRS Length = 797 Score = 78.6 bits (192), Expect = 2e-13 Identities = 39/77 (50%), Positives = 52/77 (67%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 KL D+ G EG VT V FGAFV+ G + +GLVH+S L+ F K+ ++VV+PG V V Sbjct: 636 KLSDLTPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSHNFVKDPREVVKPGDIVRV 695 Query: 337 KVLSVDAEKKRVSLELK 387 KVL VD +KR+SL L+ Sbjct: 696 KVLDVDIPRKRISLTLR 712 [174][TOP] >UniRef100_C3IDV7 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus thuringiensis IBL 4222 RepID=C3IDV7_BACTU Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [175][TOP] >UniRef100_C3GVJ8 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus thuringiensis serovar huazhongensis BGSC 4BD1 RepID=C3GVJ8_BACTU Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [176][TOP] >UniRef100_C3DE64 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus thuringiensis serovar sotto str. T04001 RepID=C3DE64_BACTS Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [177][TOP] >UniRef100_C3CD35 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=4 Tax=Bacillus thuringiensis RepID=C3CD35_BACTU Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [178][TOP] >UniRef100_C3BEW6 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BEW6_9BACI Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 42/77 (54%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V VD +K RV+L + Sbjct: 702 VWVDDVDMKKGRVALAM 718 [179][TOP] >UniRef100_C3AGL6 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=2 Tax=Bacillus mycoides RepID=C3AGL6_BACMY Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 42/77 (54%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V VD +K RV+L + Sbjct: 702 VWVDDVDMKKGRVALAM 718 [180][TOP] >UniRef100_C2Y524 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus AH676 RepID=C2Y524_BACCE Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [181][TOP] >UniRef100_C2SVD2 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=3 Tax=Bacillus cereus group RepID=C2SVD2_BACCE Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [182][TOP] >UniRef100_C2RHI8 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus BDRD-ST24 RepID=C2RHI8_BACCE Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSI 718 [183][TOP] >UniRef100_C2R2J5 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=4 Tax=Bacillus cereus group RepID=C2R2J5_BACCE Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [184][TOP] >UniRef100_C2MVA4 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus ATCC 10876 RepID=C2MVA4_BACCE Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [185][TOP] >UniRef100_C1V3S8 Transcriptional accessory protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=C1V3S8_9DELT Length = 801 Score = 78.6 bits (192), Expect = 2e-13 Identities = 37/77 (48%), Positives = 55/77 (71%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 LED+K + EG VT V +FGAFV+ G + +GLVHIS+L+ F K+ ++VV+ G K+ V+ Sbjct: 648 LEDLKPEMQLEGVVTNVTDFGAFVDVGVHQDGLVHISQLSDRFVKDPREVVKVGDKIKVR 707 Query: 340 VLSVDAEKKRVSLELKS 390 VL VD +KR++L +S Sbjct: 708 VLDVDLARKRIALSARS 724 [186][TOP] >UniRef100_C0UKG5 Transcriptional accessory protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=C0UKG5_9ACTO Length = 852 Score = 78.6 bits (192), Expect = 2e-13 Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E A AA K+ D++ G EG VT V FGAFV+ G + +GLVH+S +A+ F + Sbjct: 665 EFKTATFAAGIEKVSDLRPGMILEGQVTNVAAFGAFVDVGVHQDGLVHVSAMANRFVSDP 724 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRV--SLELKSAVAAEASAEESDDIITEPDREGADATDD 474 ++VV+ G VTVKV+ VD E+KR+ SL L A ++ S +R G TDD Sbjct: 725 REVVKSGDIVTVKVMEVDVERKRIGLSLRLDDEPGAPSTGGRSG---RREERGGGPRTDD 781 [187][TOP] >UniRef100_C0AEY5 RNA binding S1 domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEY5_9BACT Length = 788 Score = 78.6 bits (192), Expect = 2e-13 Identities = 37/78 (47%), Positives = 54/78 (69%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K ED+K G + G VT V FGAFV+ G + +GLVH+S+L+ F K+A +VV+PGQKV Sbjct: 679 KPEDLKPGMKLPGIVTNVTAFGAFVDVGVHQDGLVHVSQLSDTFVKDASEVVKPGQKVRA 738 Query: 337 KVLSVDAEKKRVSLELKS 390 V+ VD + R++L L++ Sbjct: 739 TVIEVDLARNRIALSLRT 756 [188][TOP] >UniRef100_B7QVY1 S1 RNA binding domain protein n=1 Tax=Ruegeria sp. R11 RepID=B7QVY1_9RHOB Length = 786 Score = 78.6 bits (192), Expect = 2e-13 Identities = 40/89 (44%), Positives = 55/89 (61%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ GQ V V Sbjct: 642 EITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKV 701 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEES 423 V VD +KR+ L +K A A E + Sbjct: 702 TVTEVDVPRKRIGLTMKKDGGASAKEERN 730 [189][TOP] >UniRef100_B5UVX0 S1 RNA binding domain protein n=2 Tax=Bacillus cereus RepID=B5UVX0_BACCE Length = 722 Score = 78.6 bits (192), Expect = 2e-13 Identities = 41/77 (53%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ F K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [190][TOP] >UniRef100_A9GDT8 RNA binding S1 n=1 Tax=Phaeobacter gallaeciensis BS107 RepID=A9GDT8_9RHOB Length = 788 Score = 78.6 bits (192), Expect = 2e-13 Identities = 40/88 (45%), Positives = 55/88 (62%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 + D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ GQ V V Sbjct: 643 ITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVT 702 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEES 423 V VD +KR++L +K A A E + Sbjct: 703 VTEVDVPRKRIALTMKKDGGASAKEERT 730 [191][TOP] >UniRef100_A9EP33 S1 RNA binding domain protein n=1 Tax=Phaeobacter gallaeciensis 2.10 RepID=A9EP33_9RHOB Length = 788 Score = 78.6 bits (192), Expect = 2e-13 Identities = 40/88 (45%), Positives = 55/88 (62%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 + D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ GQ V V Sbjct: 643 ITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVT 702 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEES 423 V VD +KR++L +K A A E + Sbjct: 703 VTEVDVPRKRIALTMKKDGGASAKEERT 730 [192][TOP] >UniRef100_Q6LY64 RNA binding S1 n=1 Tax=Methanococcus maripaludis RepID=Q6LY64_METMP Length = 713 Score = 78.6 bits (192), Expect = 2e-13 Identities = 38/91 (41%), Positives = 58/91 (63%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 + P + ++LED+KEG +GTV + +FGAF++ G + +GL HIS++A F K+ Sbjct: 622 DLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHP 681 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 393 DV+ G V V V+ +D +KKRVSL +K A Sbjct: 682 LDVISVGDIVDVMVMDIDFDKKRVSLSIKRA 712 [193][TOP] >UniRef100_A9AAH9 RNA binding S1 domain protein n=1 Tax=Methanococcus maripaludis C6 RepID=A9AAH9_METM6 Length = 713 Score = 78.6 bits (192), Expect = 2e-13 Identities = 38/91 (41%), Positives = 58/91 (63%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 + P + ++LED+KEG +GTV + +FGAF++ G + +GL HIS++A F K+ Sbjct: 622 DLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHP 681 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 393 DV+ G V V V+ +D +KKRVSL +K A Sbjct: 682 LDVISVGDIVDVMVMDIDFDKKRVSLSIKRA 712 [194][TOP] >UniRef100_A4FX43 RNA binding S1 domain protein n=1 Tax=Methanococcus maripaludis C5 RepID=A4FX43_METM5 Length = 713 Score = 78.6 bits (192), Expect = 2e-13 Identities = 38/91 (41%), Positives = 58/91 (63%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 + P + ++LED+KEG +GTV + +FGAF++ G + +GL HIS++A F K+ Sbjct: 622 DLPKPVLRSDVLELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHP 681 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSA 393 DV+ G V V V+ +D +KKRVSL +K A Sbjct: 682 LDVISVGDIVDVMVMDIDFDKKRVSLSIKRA 712 [195][TOP] >UniRef100_UPI0001B4A059 RNA-binding protein n=1 Tax=Bacteroides sp. 2_1_7 RepID=UPI0001B4A059 Length = 708 Score = 78.2 bits (191), Expect = 3e-13 Identities = 44/97 (45%), Positives = 56/97 (57%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 R +++VFA P + +ED+KEG G VT + FG FV+ G NGLVHIS+L Sbjct: 616 RQTIQVFAFDPTVKT------IEDLKEGQVLPGIVTNITNFGCFVDVGIKENGLVHISEL 669 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 A F + VV Q V VKVLSVD +KRV L +K Sbjct: 670 ADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMK 706 [196][TOP] >UniRef100_UPI0001AF4EAF transcriptional accessory protein Tex n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4EAF Length = 753 Score = 78.2 bits (191), Expect = 3e-13 Identities = 39/82 (47%), Positives = 53/82 (64%) Frame = +1 Query: 142 AAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPG 321 AA K+ D+K G EG VT V FGAFV+ G + +GLVH+S +A F + DVV+ G Sbjct: 625 AAGVQKIADLKVGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMAERFVADPHDVVRSG 684 Query: 322 QKVTVKVLSVDAEKKRVSLELK 387 Q V VKV+ VD E++R+ L L+ Sbjct: 685 QVVRVKVIDVDVERRRIGLSLR 706 [197][TOP] >UniRef100_UPI000185BF30 transcriptional accessory protein n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BF30 Length = 763 Score = 78.2 bits (191), Expect = 3e-13 Identities = 37/77 (48%), Positives = 52/77 (67%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D++ G EGTVT V FGAFV+ G + +GLVH+S +A GF + +VV+ G+ V V Sbjct: 641 KISDLQPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSNMARGFVSDPHEVVRSGEVVKV 700 Query: 337 KVLSVDAEKKRVSLELK 387 KVL VD E+ R+ L L+ Sbjct: 701 KVLDVDVERNRIGLSLR 717 [198][TOP] >UniRef100_Q65QE6 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QE6_MANSM Length = 771 Score = 78.2 bits (191), Expect = 3e-13 Identities = 39/106 (36%), Positives = 65/106 (61%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGT+T V FGAFV+ G + +GLVHIS L+ F ++ VV+ G V V Sbjct: 644 EITDLKAGMILEGTITNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDVVKV 703 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATDD 474 KVL VD ++R++L ++ +A ++E+SD ++ + + D+ Sbjct: 704 KVLEVDVARRRIALTMRLDESAVKNSEKSDRTLSTKSGQDRNRRDN 749 [199][TOP] >UniRef100_Q5YS43 Putative RNA-binding protein n=1 Tax=Nocardia farcinica RepID=Q5YS43_NOCFA Length = 783 Score = 78.2 bits (191), Expect = 3e-13 Identities = 40/89 (44%), Positives = 56/89 (62%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E AE AA K+ D+K G EG VT V FGAFV+ G + +GLVH+S ++ F K+ Sbjct: 628 EFKTAEFAAGVEKVADLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHSFVKDP 687 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 ++VV+ G V VKVL VD ++R+ L L+ Sbjct: 688 REVVKSGDVVKVKVLEVDVARQRIGLSLR 716 [200][TOP] >UniRef100_Q5WJU8 Transcriptional accessory protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJU8_BACSK Length = 720 Score = 78.2 bits (191), Expect = 3e-13 Identities = 40/100 (40%), Positives = 62/100 (62%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP+ E A + +K+ED+++G E +GTV + +FGAFV+ G +GLVH+SKL Sbjct: 619 RPNRDPRDELAAPQLKQDVLKMEDLEKGMELQGTVRNIVDFGAFVDIGVKQDGLVHVSKL 678 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAV 396 + + K+ +VV G VTV V VD +K R+SL +K+ + Sbjct: 679 SDRYIKHPMEVVSIGDVVTVWVEDVDEKKGRISLTMKAPI 718 [201][TOP] >UniRef100_Q1MKQ5 Putative RNA-binding domain transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MKQ5_RHIL3 Length = 769 Score = 78.2 bits (191), Expect = 3e-13 Identities = 38/90 (42%), Positives = 57/90 (63%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 643 EISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESD 426 +V+ VDA++KR+ L ++ + A D Sbjct: 703 RVVEVDAKRKRIGLSMRRDDGSSAPPPRGD 732 [202][TOP] >UniRef100_C6C261 RNA binding S1 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C261_DESAD Length = 716 Score = 78.2 bits (191), Expect = 3e-13 Identities = 36/79 (45%), Positives = 54/79 (68%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D++EG G VT V FGAFV+ G + +GLVHIS++A F ++ VV PGQ + V Sbjct: 636 EVSDLREGMILNGIVTNVTAFGAFVDIGVHQDGLVHISRMADDFVRDPATVVHPGQALKV 695 Query: 337 KVLSVDAEKKRVSLELKSA 393 KVL VD ++KR+SL ++ + Sbjct: 696 KVLDVDIQRKRISLSMRQS 714 [203][TOP] >UniRef100_B1Y002 RNA binding S1 domain protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y002_LEPCP Length = 827 Score = 78.2 bits (191), Expect = 3e-13 Identities = 36/82 (43%), Positives = 58/82 (70%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++D+ EG EGTV+ V +FGAF++ G + +GLVH+S+L++ F +A++VV+ G V V+ Sbjct: 699 IKDLSEGMVLEGTVSNVAQFGAFIDLGVHQDGLVHVSQLSNKFVNDAREVVKTGDIVKVR 758 Query: 340 VLSVDAEKKRVSLELKSAVAAE 405 VL VD +KR+SL +K A+ Sbjct: 759 VLEVDLARKRISLTMKLDAPAQ 780 [204][TOP] >UniRef100_A7GKE9 RNA binding S1 domain protein n=1 Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GKE9_BACCN Length = 722 Score = 78.2 bits (191), Expect = 3e-13 Identities = 40/77 (51%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAF++ G +GLVHISKL+ F K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V VD +K RV+L + Sbjct: 702 VWVDDVDMKKGRVALSM 718 [205][TOP] >UniRef100_A5U9S2 Transcription elongation factor GreB n=1 Tax=Haemophilus influenzae PittEE RepID=A5U9S2_HAEIE Length = 770 Score = 78.2 bits (191), Expect = 3e-13 Identities = 52/152 (34%), Positives = 77/152 (50%) Frame = +1 Query: 16 TVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEG 195 TV+ + + +P R P G + A VFAE ++ D+K G EG Sbjct: 614 TVQDIFKELEKPGRDPRGEFKTA---------VFAEGVE--------EITDLKSGMILEG 656 Query: 196 TVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVS 375 TVT V FGAFV+ G + +GLVHIS L+ F ++ VV+ G V VKVL VD +KR++ Sbjct: 657 TVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIA 716 Query: 376 LELKSAVAAEASAEESDDIITEPDREGADATD 471 L ++ +A + +SD ++ R D Sbjct: 717 LTMRLDESAVKNDSKSDRTLSARPRGNTQRED 748 [206][TOP] >UniRef100_A1WZ97 RNA binding S1 domain protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZ97_HALHL Length = 798 Score = 78.2 bits (191), Expect = 3e-13 Identities = 44/107 (41%), Positives = 61/107 (57%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP R A E K++D++ G EGTVT V FGAFV+ G + +GLVHIS L Sbjct: 642 RPEFRTAAFREGVE------KIQDLEPGMVLEGTVTNVANFGAFVDIGVHQDGLVHISAL 695 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAE 417 A F ++ +D V+ G V VKV+ VD E++R+ L ++ A AE Sbjct: 696 AHEFVRDPRDKVRTGDVVQVKVMEVDLERQRIGLSMRLDDDPNAQAE 742 [207][TOP] >UniRef100_Q19V19 HI0568-like protein n=1 Tax=Haemophilus influenzae RepID=Q19V19_HAEIN Length = 770 Score = 78.2 bits (191), Expect = 3e-13 Identities = 52/152 (34%), Positives = 77/152 (50%) Frame = +1 Query: 16 TVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEG 195 TV+ + + +P R P G + A VFAE ++ D+K G EG Sbjct: 614 TVQDIFKELEKPGRDPRGEFKTA---------VFAEGVE--------EITDLKSGMILEG 656 Query: 196 TVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVS 375 TVT V FGAFV+ G + +GLVHIS L+ F ++ VV+ G V VKVL VD +KR++ Sbjct: 657 TVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIA 716 Query: 376 LELKSAVAAEASAEESDDIITEPDREGADATD 471 L ++ +A + +SD ++ R D Sbjct: 717 LTMRLDESAVKNDSKSDRTLSARPRGNTQRED 748 [208][TOP] >UniRef100_C9BPK0 RNA binding protein S1 n=7 Tax=Enterococcus faecium RepID=C9BPK0_ENTFC Length = 726 Score = 78.2 bits (191), Expect = 3e-13 Identities = 42/90 (46%), Positives = 54/90 (60%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E PA + +ED+K G E GTV V +FGAFV+ G +GLVHISKL+ F K+ Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELKS 390 DVV G VTV + VD +K R+SL + S Sbjct: 693 TDVVSVGDIVTVWIEQVDTKKGRISLTMLS 722 [209][TOP] >UniRef100_C9B562 RNA binding protein S1 n=1 Tax=Enterococcus faecium 1,231,501 RepID=C9B562_ENTFC Length = 726 Score = 78.2 bits (191), Expect = 3e-13 Identities = 42/90 (46%), Positives = 54/90 (60%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E PA + +ED+K G E GTV V +FGAFV+ G +GLVHISKL+ F K+ Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELKS 390 DVV G VTV + VD +K R+SL + S Sbjct: 693 TDVVSVGDIVTVWIEQVDTKKGRISLTMLS 722 [210][TOP] >UniRef100_C7XAY7 RNA-binding protein n=1 Tax=Parabacteroides sp. D13 RepID=C7XAY7_9PORP Length = 708 Score = 78.2 bits (191), Expect = 3e-13 Identities = 44/97 (45%), Positives = 56/97 (57%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 R +++VFA P + +ED+KEG G VT + FG FV+ G NGLVHIS+L Sbjct: 616 RQTIQVFAFDPTVKT------IEDLKEGQVLPGIVTNITNFGCFVDVGIKENGLVHISEL 669 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 A F + VV Q V VKVLSVD +KRV L +K Sbjct: 670 ADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMK 706 [211][TOP] >UniRef100_C6QU16 RNA binding S1 domain protein n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QU16_9BACI Length = 728 Score = 78.2 bits (191), Expect = 3e-13 Identities = 43/97 (44%), Positives = 58/97 (59%) Frame = +1 Query: 94 VRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISK 273 VRP E P +K+ED+K+G E EGTV V +FGAFV+ G +GLVHISK Sbjct: 620 VRPERDPRDELPKPLLRKDILKMEDLKKGMELEGTVRNVVDFGAFVDIGVKQDGLVHISK 679 Query: 274 LASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLEL 384 L+ + ++ DVV G V V V +VD +K R+SL + Sbjct: 680 LSKQYVRHPLDVVSVGDVVKVWVDNVDVDKGRISLSM 716 [212][TOP] >UniRef100_C4EZU3 Transcription elongation factor GreB n=1 Tax=Haemophilus influenzae 7P49H1 RepID=C4EZU3_HAEIN Length = 770 Score = 78.2 bits (191), Expect = 3e-13 Identities = 52/152 (34%), Positives = 77/152 (50%) Frame = +1 Query: 16 TVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEG 195 TV+ + + +P R P G + A VFAE ++ D+K G EG Sbjct: 614 TVQDIFKELEKPGRDPRGEFKTA---------VFAEGVE--------EITDLKSGMILEG 656 Query: 196 TVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVS 375 TVT V FGAFV+ G + +GLVHIS L+ F ++ VV+ G V VKVL VD +KR++ Sbjct: 657 TVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIA 716 Query: 376 LELKSAVAAEASAEESDDIITEPDREGADATD 471 L ++ +A + +SD ++ R D Sbjct: 717 LTMRLDESAVKNDSKSDRTLSARPRGNTQRED 748 [213][TOP] >UniRef100_C3A0G0 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus mycoides DSM 2048 RepID=C3A0G0_BACMY Length = 722 Score = 78.2 bits (191), Expect = 3e-13 Identities = 39/77 (50%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [214][TOP] >UniRef100_C2XNH9 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus AH603 RepID=C2XNH9_BACCE Length = 722 Score = 78.2 bits (191), Expect = 3e-13 Identities = 39/77 (50%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [215][TOP] >UniRef100_A9VQF5 RNA binding S1 domain protein n=2 Tax=Bacillus cereus group RepID=A9VQF5_BACWK Length = 722 Score = 78.2 bits (191), Expect = 3e-13 Identities = 39/77 (50%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [216][TOP] >UniRef100_C2PQA5 Tex protein-related transcription accessory protein (S1 RNA binding domain) n=1 Tax=Bacillus cereus AH621 RepID=C2PQA5_BACCE Length = 722 Score = 78.2 bits (191), Expect = 3e-13 Identities = 39/77 (50%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGT+ V +FGAFV+ G +GLVHISKL+ F K+ D+V GQ V Sbjct: 642 LKLEDLKRGMELEGTIRNVVDFGAFVDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [217][TOP] >UniRef100_C2HBI6 S1 domain RNA-binding protein n=2 Tax=Enterococcus faecium RepID=C2HBI6_ENTFC Length = 726 Score = 78.2 bits (191), Expect = 3e-13 Identities = 42/90 (46%), Positives = 54/90 (60%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E PA + +ED+K G E GTV V +FGAFV+ G +GLVHISKL+ F K+ Sbjct: 633 EMPAPLLRTDVLSMEDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHP 692 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELKS 390 DVV G VTV + VD +K R+SL + S Sbjct: 693 TDVVSVGDIVTVWIEQVDTKKGRISLTMLS 722 [218][TOP] >UniRef100_C2AH79 Transcriptional accessory protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=C2AH79_THECU Length = 810 Score = 78.2 bits (191), Expect = 3e-13 Identities = 42/97 (43%), Positives = 59/97 (60%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP+ + A A E LED+K G EG VT V FGAFV+ G + +GLVHIS + Sbjct: 657 RPAFKTAAFADGVET------LEDLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHISAM 710 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 + + + ++VV+PG V V+VL VD +KR+SL L+ Sbjct: 711 SKNYVSDPREVVKPGDIVKVRVLDVDIPRKRISLTLR 747 [219][TOP] >UniRef100_A4TUT2 Transcriptional accessory protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TUT2_9PROT Length = 779 Score = 78.2 bits (191), Expect = 3e-13 Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 1/88 (1%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++D++ G EG VT V FGAFV+ G + +GLVH+S LA F K+ +VV+PG V+VK Sbjct: 651 MQDLQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKPGDVVSVK 710 Query: 340 VLSVDAEKKRVSLEL-KSAVAAEASAEE 420 VL VD ++KR++L + K+ A A +E Sbjct: 711 VLEVDLKRKRIALTMRKNDAPAPARPQE 738 [220][TOP] >UniRef100_UPI0001BBAFC1 RNA-binding protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=UPI0001BBAFC1 Length = 708 Score = 77.8 bits (190), Expect = 4e-13 Identities = 44/97 (45%), Positives = 56/97 (57%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 R +++VFA P + +ED+KEG G VT + FG FV+ G NGLVHIS+L Sbjct: 616 RQTIQVFAFDPMVKT------IEDLKEGQVLPGIVTNITNFGCFVDVGIKENGLVHISEL 669 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 A F + VV Q V VKVLSVD +KRV L +K Sbjct: 670 ADRFVSDPTQVVSIHQHVKVKVLSVDLSRKRVQLSMK 706 [221][TOP] >UniRef100_UPI0001B4F31E transcription accessory protein n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F31E Length = 800 Score = 77.8 bits (190), Expect = 4e-13 Identities = 38/77 (49%), Positives = 52/77 (67%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V Sbjct: 646 KIGDLASGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSKTFVKDPRDVVKPGDIVRV 705 Query: 337 KVLSVDAEKKRVSLELK 387 KVL VD +KR+SL L+ Sbjct: 706 KVLDVDIPRKRISLTLR 722 [222][TOP] >UniRef100_Q2KBT4 Probable transcriptional accessory protein (RNA binding S1 domain) n=1 Tax=Rhizobium etli CFN 42 RepID=Q2KBT4_RHIEC Length = 769 Score = 77.8 bits (190), Expect = 4e-13 Identities = 38/90 (42%), Positives = 57/90 (63%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+ G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V Sbjct: 643 EISDLTPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKV 702 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESD 426 +V+ VDA++KR+ L ++ + AS D Sbjct: 703 RVVEVDAKRKRIGLSMRRDDGSSASQPRGD 732 [223][TOP] >UniRef100_Q21VK3 RNA binding S1 n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21VK3_RHOFD Length = 807 Score = 77.8 bits (190), Expect = 4e-13 Identities = 36/90 (40%), Positives = 59/90 (65%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++D+KEG EGTV+ V FGAFV+ G + +GLVH+S+L+ F +A+++V+ G V V+ Sbjct: 676 IKDLKEGMVLEGTVSNVAAFGAFVDLGVHQDGLVHVSQLSHKFVTDAREIVKTGDIVKVQ 735 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAEESDD 429 V+ VD +KR++L +K A + D+ Sbjct: 736 VVEVDVARKRIALTMKLGAAPSRQSSAGDN 765 [224][TOP] >UniRef100_C6XJK5 RNA binding S1 domain protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJK5_HIRBI Length = 736 Score = 77.8 bits (190), Expect = 4e-13 Identities = 37/89 (41%), Positives = 56/89 (62%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+ G + EGTVT V FGAFV+ G + +GLVHIS+LA F + D+V+ G V V Sbjct: 648 EISDLNSGMKLEGTVTNVTAFGAFVDIGVHQDGLVHISQLADKFVSDPHDIVKAGDIVNV 707 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEES 423 V+ VD ++KR+ L +KS +++ S Sbjct: 708 TVMEVDVQRKRIGLSMKSEPELQSNNRRS 736 [225][TOP] >UniRef100_C1B2S2 Transcriptional accessory protein n=1 Tax=Rhodococcus opacus B4 RepID=C1B2S2_RHOOB Length = 807 Score = 77.8 bits (190), Expect = 4e-13 Identities = 42/102 (41%), Positives = 59/102 (57%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E A AA K+ +K G EG VT V FGAFV+ G + +GLVH+S ++ F K+ Sbjct: 621 EFKTATFAAGIEKVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDP 680 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESD 426 +DVV+ G VTVKVL VD ++R+ L L+ A ++D Sbjct: 681 RDVVKSGDVVTVKVLEVDEARQRIGLTLRLDDEVGAGGRKND 722 [226][TOP] >UniRef100_B9M315 RNA binding S1 domain protein n=1 Tax=Geobacter sp. FRC-32 RepID=B9M315_GEOSF Length = 756 Score = 77.8 bits (190), Expect = 4e-13 Identities = 37/76 (48%), Positives = 54/76 (71%) Frame = +1 Query: 166 DVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVL 345 D++EG +GTVT V FGAFV+ G + +GLVH+S L+ F + A + V+ G+ V VKVL Sbjct: 645 DLQEGMILQGTVTNVAAFGAFVDIGVHQDGLVHVSHLSRRFVREASEAVKVGEIVKVKVL 704 Query: 346 SVDAEKKRVSLELKSA 393 +VD ++KR+SL +K A Sbjct: 705 AVDLQRKRISLSIKEA 720 [227][TOP] >UniRef100_B1WZ45 Probable RNA binding S1 protein n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WZ45_CYAA5 Length = 718 Score = 77.8 bits (190), Expect = 4e-13 Identities = 36/77 (46%), Positives = 55/77 (71%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D++EG EG +T V FGAFV+ G + +GL+HIS+LA+ F + K+VV+ G+ V V Sbjct: 640 EINDLREGMILEGVITNVVNFGAFVDIGVHQDGLIHISQLANYFVSDPKEVVKVGEVVKV 699 Query: 337 KVLSVDAEKKRVSLELK 387 KVL +D + KR+SL +K Sbjct: 700 KVLEIDEKLKRISLSMK 716 [228][TOP] >UniRef100_B0UJU3 RNA binding S1 domain protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UJU3_METS4 Length = 776 Score = 77.8 bits (190), Expect = 4e-13 Identities = 48/121 (39%), Positives = 66/121 (54%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RPS R + E + D+K G EG VT V FGAFV+ G + +GLVHIS L Sbjct: 630 RPSFRTASFQEGVET------IGDLKPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHISAL 683 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREG 456 ++ F ++ + VV+PG V VKVL VD +KR+SL ++ A +A P R+G Sbjct: 684 SNSFVRDPRAVVKPGDVVRVKVLDVDVPRKRISLTMRLDDAPQA----------RPGRDG 733 Query: 457 A 459 A Sbjct: 734 A 734 [229][TOP] >UniRef100_A8MJM7 RNA binding S1 domain protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJM7_ALKOO Length = 718 Score = 77.8 bits (190), Expect = 4e-13 Identities = 38/89 (42%), Positives = 57/89 (64%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P + +K+ED+K GTV V +FGAFV+ G +GLVH+S+L++ F KNA Sbjct: 627 EMPKPLFKSDVLKMEDLKLDMIMPGTVRNVVDFGAFVDIGVKQDGLVHVSELSNRFVKNA 686 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 DVV G +V VK++ +D E+ ++SL +K Sbjct: 687 MDVVSVGDEVKVKIIGLDIERGKISLSIK 715 [230][TOP] >UniRef100_A6TLF6 RNA binding S1 domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TLF6_ALKMQ Length = 728 Score = 77.8 bits (190), Expect = 4e-13 Identities = 38/89 (42%), Positives = 56/89 (62%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P + +K+ED+K GTV V +FGAFV+ G +GLVH+S+L++ F KN Sbjct: 637 EMPMPIFRSDVLKMEDLKLDMVMTGTVRNVVDFGAFVDIGVKQDGLVHVSQLSNKFVKNP 696 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 DVV G +V VK++ +D E+ +VSL +K Sbjct: 697 MDVVSVGDEVEVKIIGIDVERGKVSLSMK 725 [231][TOP] >UniRef100_C5V4H3 RNA binding S1 domain protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4H3_9PROT Length = 779 Score = 77.8 bits (190), Expect = 4e-13 Identities = 42/105 (40%), Positives = 63/105 (60%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D++ EG VT V FGAFV+ G + +GLVHIS LA+ F K+ VV+ GQ V V Sbjct: 656 KISDLQPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALANSFVKDPHTVVKAGQIVKV 715 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEESDDIITEPDREGADATD 471 KVL VD ++KR++L ++ A AA + + + P G + ++ Sbjct: 716 KVLEVDEKRKRIALTMRLADAAPKADAKPRETKRPPVHRGQEKSE 760 [232][TOP] >UniRef100_B4B1E7 RNA binding S1 domain protein n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B1E7_9CHRO Length = 718 Score = 77.8 bits (190), Expect = 4e-13 Identities = 38/80 (47%), Positives = 55/80 (68%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +++ D+KEG E EG VT V FGAFV+ G + +GLVHIS+LA F + VV+ GQ V Sbjct: 638 MEISDLKEGMELEGIVTNVVNFGAFVDVGVHQDGLVHISQLADHFVSDPNQVVKVGQVVK 697 Query: 334 VKVLSVDAEKKRVSLELKSA 393 V+V+ V+ + KR+ L +K+A Sbjct: 698 VRVMEVNEKLKRIGLSMKAA 717 [233][TOP] >UniRef100_A6UPD5 RNA binding S1 domain protein n=1 Tax=Methanococcus vannielii SB RepID=A6UPD5_METVS Length = 722 Score = 77.8 bits (190), Expect = 4e-13 Identities = 36/81 (44%), Positives = 55/81 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +K ED+KEG +GT+ + +FGAFV+ G + +GL+HIS+++ F K+ +V+ G V Sbjct: 640 LKFEDLKEGMILKGTIRNIVDFGAFVDIGVHHDGLIHISEVSDRFIKHPLEVISVGDVVN 699 Query: 334 VKVLSVDAEKKRVSLELKSAV 396 V VL +D EK RVSL +K A+ Sbjct: 700 VFVLGIDFEKNRVSLSIKKAI 720 [234][TOP] >UniRef100_A0LE14 Polyribonucleotide nucleotidyltransferase n=1 Tax=Magnetococcus sp. MC-1 RepID=PNP_MAGSM Length = 701 Score = 77.8 bits (190), Expect = 4e-13 Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 2/92 (2%) Frame = +1 Query: 118 AEAPAAEQAAKAIK--LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFT 291 ++ +AEQA K IK + +V++G YEG V + +FGAFVN N +GLVHIS+LA+ Sbjct: 603 SDQASAEQAVKIIKSIVAEVEKGQVYEGKVVRITDFGAFVNILPNKDGLVHISQLANRRV 662 Query: 292 KNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 +N DVV+ G VTVKVL VD + RV L +K Sbjct: 663 QNVTDVVKEGDVVTVKVLDVD-RQGRVKLTMK 693 [235][TOP] >UniRef100_UPI0001B4186F S1 RNA binding domain protein n=1 Tax=Bacillus anthracis str. Australia 94 RepID=UPI0001B4186F Length = 722 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/77 (51%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [236][TOP] >UniRef100_UPI000045E8C6 COG2183: Transcriptional accessory protein n=1 Tax=Haemophilus influenzae R2846 RepID=UPI000045E8C6 Length = 772 Score = 77.4 bits (189), Expect = 5e-13 Identities = 51/145 (35%), Positives = 76/145 (52%) Frame = +1 Query: 16 TVKAHGRSVLRPVRGPAGRRQVAFTGVRPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEG 195 TV+ + + +P R P G + A VFAE ++ D+K G EG Sbjct: 616 TVQDIFKELEKPGRDPRGEFKTA---------VFAEGVE--------EITDLKSGMILEG 658 Query: 196 TVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVS 375 TVT V FGAFV+ G + +GLVHIS L+ F ++ VV+ G V VKVL VD +KR++ Sbjct: 659 TVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRKRIA 718 Query: 376 LELKSAVAAEASAEESDDIITEPDR 450 L ++ +A + +SD ++ R Sbjct: 719 LTMRLDESAVKNDSKSDRTLSARPR 743 [237][TOP] >UniRef100_Q73ET3 S1 RNA binding domain protein n=1 Tax=Bacillus cereus ATCC 10987 RepID=Q73ET3_BACC1 Length = 722 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/77 (51%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [238][TOP] >UniRef100_Q67K87 Ribosomal protein S1-like RNA-binding domain n=1 Tax=Symbiobacterium thermophilum RepID=Q67K87_SYMTH Length = 764 Score = 77.4 bits (189), Expect = 5e-13 Identities = 38/89 (42%), Positives = 57/89 (64%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E P +KLED++ G E GTV V +FGAFV+ G + +GLVH+S+L+ + K+ Sbjct: 632 ELPQPIFRTDVLKLEDLQVGMELMGTVRNVVDFGAFVDIGVHEDGLVHVSQLSHKYVKHP 691 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 +VVQ G V VKV+ VD +++R+ L +K Sbjct: 692 SEVVQVGDVVRVKVIEVDLKRQRIGLSMK 720 [239][TOP] >UniRef100_Q63GW7 Probable transcription accessory protein, S1 RNA-binding domain n=1 Tax=Bacillus cereus E33L RepID=Q63GW7_BACCZ Length = 724 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/77 (51%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 644 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 703 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 704 VWVDDIDTKKGRVALSM 720 [240][TOP] >UniRef100_Q1GIT0 RNA binding S1 n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GIT0_SILST Length = 814 Score = 77.4 bits (189), Expect = 5e-13 Identities = 38/89 (42%), Positives = 56/89 (62%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 ++ D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ ++V+ GQ V V Sbjct: 670 EITDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEIVKTGQVVKV 729 Query: 337 KVLSVDAEKKRVSLELKSAVAAEASAEES 423 V+ VD +KR+ L +K A A + + Sbjct: 730 TVVEVDVPRKRIGLTMKKDGGASAREDRA 758 [241][TOP] >UniRef100_Q0VSY6 S1 RNA binding domain protein n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VSY6_ALCBS Length = 790 Score = 77.4 bits (189), Expect = 5e-13 Identities = 38/76 (50%), Positives = 52/76 (68%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 L+D+K+ EGTVT V FGAFV+ G + +GLVH+S LA F ++ VV PG V VK Sbjct: 644 LKDLKQNMILEGTVTNVTNFGAFVDVGVHQDGLVHVSALADKFVEDPHQVVAPGDIVKVK 703 Query: 340 VLSVDAEKKRVSLELK 387 VL VD ++KR+SL ++ Sbjct: 704 VLDVDLDRKRISLTMR 719 [242][TOP] >UniRef100_Q0RTD4 Putative transcriptional accessory protein n=1 Tax=Frankia alni ACN14a RepID=Q0RTD4_FRAAA Length = 895 Score = 77.4 bits (189), Expect = 5e-13 Identities = 42/97 (43%), Positives = 57/97 (58%) Frame = +1 Query: 97 RPSVRVFAEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKL 276 RP+ R A E A D+ G EGTVT V FGAFV+ G + +GLVH+S + Sbjct: 641 RPAFRTAAFTEGIETLA------DLVPGMTLEGTVTNVAAFGAFVDVGVHQDGLVHVSAM 694 Query: 277 ASGFTKNAKDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 + F + ++V +PG VTVKVL VD +KR+SL L+ Sbjct: 695 SKNFVSDPREVAKPGDIVTVKVLDVDIPRKRISLTLR 731 [243][TOP] >UniRef100_C1EUA0 S1 RNA binding domain protein n=1 Tax=Bacillus cereus 03BB102 RepID=C1EUA0_BACC3 Length = 722 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/77 (51%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [244][TOP] >UniRef100_B8HZ35 RNA binding S1 domain protein n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HZ35_CYAP4 Length = 763 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/91 (43%), Positives = 56/91 (61%) Frame = +1 Query: 118 AEAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKN 297 AE A A + D+ G + EG VT V FGAFV+ G + +GLVH+S+LA F + Sbjct: 626 AEFTFARFRADVKAISDLSVGMQLEGMVTNVANFGAFVDIGVHQDGLVHVSQLADRFVSD 685 Query: 298 AKDVVQPGQKVTVKVLSVDAEKKRVSLELKS 390 K +V+ GQ V V+VL VD + KR+SL ++S Sbjct: 686 PKQIVKVGQVVNVRVLEVDEKLKRISLSMRS 716 [245][TOP] >UniRef100_B2UZM1 Protein tex n=1 Tax=Clostridium botulinum E3 str. Alaska E43 RepID=B2UZM1_CLOBA Length = 725 Score = 77.4 bits (189), Expect = 5e-13 Identities = 39/89 (43%), Positives = 57/89 (64%) Frame = +1 Query: 121 EAPAAEQAAKAIKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNA 300 E PA I+L+D+K G GTV V +FGAFV+ G + +GLVH S++A+ F K+ Sbjct: 629 EMPAPILKTGIIELKDLKPGMVLNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVKHP 688 Query: 301 KDVVQPGQKVTVKVLSVDAEKKRVSLELK 387 D+V+ G V V +L VD ++KR+SL +K Sbjct: 689 LDIVKVGDIVKVSILEVDQKRKRISLSMK 717 [246][TOP] >UniRef100_B1ZSU7 RNA binding S1 domain protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZSU7_OPITP Length = 794 Score = 77.4 bits (189), Expect = 5e-13 Identities = 38/76 (50%), Positives = 53/76 (69%) Frame = +1 Query: 163 EDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVKV 342 +D+K G + G VT V FGAFV+ G + +GLVHIS+LA F K+A VV+P QKVTV V Sbjct: 660 KDLKPGMKLPGIVTNVTAFGAFVDIGVHQDGLVHISQLADTFVKDAATVVKPQQKVTVTV 719 Query: 343 LSVDAEKKRVSLELKS 390 + VD + R++L ++S Sbjct: 720 VEVDLARNRIALSMRS 735 [247][TOP] >UniRef100_A6U7B2 RNA binding S1 domain protein n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6U7B2_SINMW Length = 768 Score = 77.4 bits (189), Expect = 5e-13 Identities = 38/86 (44%), Positives = 54/86 (62%) Frame = +1 Query: 160 LEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTVK 339 ++D+K G EGTVT V FGAFV+ G + +GLVH+S+LA F K+ +VV+ G V V+ Sbjct: 644 IKDLKVGMRLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVHVR 703 Query: 340 VLSVDAEKKRVSLELKSAVAAEASAE 417 V VD +KR+ L ++ AE E Sbjct: 704 VTEVDVARKRIGLSMRKEGGAETPRE 729 [248][TOP] >UniRef100_Q4MPT2 S1 RNA binding domain protein n=1 Tax=Bacillus cereus G9241 RepID=Q4MPT2_BACCE Length = 722 Score = 77.4 bits (189), Expect = 5e-13 Identities = 40/77 (51%), Positives = 52/77 (67%) Frame = +1 Query: 154 IKLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVT 333 +KLED+K G E EGTV V +FGAFV+ G +GLVHISKL+ + K+ DVV GQ V Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701 Query: 334 VKVLSVDAEKKRVSLEL 384 V V +D +K RV+L + Sbjct: 702 VWVDDIDTKKGRVALSM 718 [249][TOP] >UniRef100_C9Z848 Putative transcriptional accessory protein n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z848_STRSC Length = 794 Score = 77.4 bits (189), Expect = 5e-13 Identities = 37/77 (48%), Positives = 51/77 (66%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 K+ D+ G EG VT V FGAF++ G + +GL H+S L+ F K+ +DVV+PG V V Sbjct: 651 KISDLVSGMVLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKTFVKDPRDVVKPGDIVKV 710 Query: 337 KVLSVDAEKKRVSLELK 387 KVL VD +KR+SL L+ Sbjct: 711 KVLDVDIPRKRISLTLR 727 [250][TOP] >UniRef100_C9NGA0 RNA binding S1 domain protein n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9NGA0_9ACTO Length = 808 Score = 77.4 bits (189), Expect = 5e-13 Identities = 39/77 (50%), Positives = 52/77 (67%) Frame = +1 Query: 157 KLEDVKEGSEYEGTVTTVEEFGAFVNFGANTNGLVHISKLASGFTKNAKDVVQPGQKVTV 336 KL D+ G EG VT V FGAFV+ G + +GLVH+S ++ F K+ +DVV+PG V V Sbjct: 644 KLGDLVPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPRDVVKPGDIVKV 703 Query: 337 KVLSVDAEKKRVSLELK 387 KV+ VD +KRVSL L+ Sbjct: 704 KVMDVDIPRKRVSLTLR 720