AV642396 ( HCL051b04_r )

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[1][TOP]
>UniRef100_A8I003 Ycf32-related subunit of photosystem II n=1 Tax=Chlamydomonas
           reinhardtii RepID=A8I003_CHLRE
          Length = 260

 Score =  268 bits (686), Expect = 1e-70
 Identities = 145/145 (100%), Positives = 145/145 (100%)
 Frame = +1

Query: 55  MAALRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGTVATLSSVAA 234
           MAALRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGTVATLSSVAA
Sbjct: 1   MAALRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGTVATLSSVAA 60

Query: 235 SWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNKRA 414
           SWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNKRA
Sbjct: 61  SWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNKRA 120

Query: 415 VPAAVGMGAAASLLFAQSAEASTEI 489
           VPAAVGMGAAASLLFAQSAEASTEI
Sbjct: 121 VPAAVGMGAAASLLFAQSAEASTEI 145

 Score =  144 bits (364), Expect = 2e-33
 Identities = 75/87 (86%), Positives = 82/87 (94%)
 Frame = +1

Query: 229 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 408
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQLNQMDAKNK
Sbjct: 130 AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVMGWVGFNIFGSLQAQLNQMDAKNK 189

Query: 409 RAVPAAVGMGAAASLLFAQSAEASTEI 489
           RAVPAAVGMGAAASLLFAQSAEASTEI
Sbjct: 190 RAVPAAVGMGAAASLLFAQSAEASTEI 216

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 47/60 (78%), Positives = 55/60 (91%)
 Frame = +1

Query: 229 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 408
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQL+QMDAKNK
Sbjct: 201 AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLSQMDAKNK 260

[2][TOP]
>UniRef100_A8JKA1 Ycf32-related polyprotein of photosystem II (Fragment) n=1
           Tax=Chlamydomonas reinhardtii RepID=A8JKA1_CHLRE
          Length = 354

 Score =  183 bits (465), Expect = 4e-45
 Identities = 97/97 (100%), Positives = 97/97 (100%)
 Frame = +1

Query: 199 VGTVATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQA 378
           VGTVATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQA
Sbjct: 1   VGTVATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQA 60

Query: 379 QLNQMDAKNKRAVPAAVGMGAAASLLFAQSAEASTEI 489
           QLNQMDAKNKRAVPAAVGMGAAASLLFAQSAEASTEI
Sbjct: 61  QLNQMDAKNKRAVPAAVGMGAAASLLFAQSAEASTEI 97

 Score =  144 bits (364), Expect = 2e-33
 Identities = 75/87 (86%), Positives = 82/87 (94%)
 Frame = +1

Query: 229 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 408
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQLNQMDAKNK
Sbjct: 82  AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLNQMDAKNK 141

Query: 409 RAVPAAVGMGAAASLLFAQSAEASTEI 489
           RAVPAAVGMGAAASLLFAQSAEASTEI
Sbjct: 142 RAVPAAVGMGAAASLLFAQSAEASTEI 168

 Score =  144 bits (364), Expect = 2e-33
 Identities = 75/87 (86%), Positives = 82/87 (94%)
 Frame = +1

Query: 229 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 408
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQLNQMDAKNK
Sbjct: 153 AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLNQMDAKNK 212

Query: 409 RAVPAAVGMGAAASLLFAQSAEASTEI 489
           RAVPAAVGMGAAASLLFAQSAEASTEI
Sbjct: 213 RAVPAAVGMGAAASLLFAQSAEASTEI 239

 Score =  144 bits (364), Expect = 2e-33
 Identities = 75/87 (86%), Positives = 82/87 (94%)
 Frame = +1

Query: 229 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 408
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQLNQMDAKNK
Sbjct: 224 AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLNQMDAKNK 283

Query: 409 RAVPAAVGMGAAASLLFAQSAEASTEI 489
           RAVPAAVGMGAAASLLFAQSAEASTEI
Sbjct: 284 RAVPAAVGMGAAASLLFAQSAEASTEI 310

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 47/60 (78%), Positives = 54/60 (90%)
 Frame = +1

Query: 229 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKNK 408
           AAS + A +A+A+TE+A+LAASDNR  ILATLLVPV+GWVGFNIFGSLQAQL QMDAKNK
Sbjct: 295 AASLLFAQSAEASTEIATLAASDNRVAILATLLVPVIGWVGFNIFGSLQAQLRQMDAKNK 354

[3][TOP]
>UniRef100_C1MZ88 Photosystem II PsbY protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MZ88_9CHLO
          Length = 279

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 4/158 (2%)
 Frame = +1

Query: 28  ALCLPRLVKMAALRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGT 207
           ++ +P L    + R+S     + R         LPVR A   V   A A  +    ++G 
Sbjct: 3   SIAMPVLSAAVSARVSVRAKVSTRGLRAVGVKPLPVRPAAVRVSASAAAESQTDDLQLGQ 62

Query: 208 VATLSSVAASWMMAGNAQAATE-LASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQL 384
            A L+   A  +    A AA+E L+ +A  D+RA I   +L P +GWV +NI      Q 
Sbjct: 63  TAALTLAGALALGTEQASAASESLSQVAGFDSRALIFLGILGPAIGWVLYNILTPGLNQF 122

Query: 385 NQMDAKN---KRAVPAAVGMGAAASLLFAQSAEASTEI 489
           N M  KN   K+ +P  +G+ AAA     + A+A+TE+
Sbjct: 123 NSMQEKNARGKKGIPLGLGLSAAALAGMPEQADAATEL 160

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 41/92 (44%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
 Frame = +1

Query: 223 SVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAK 402
           S AA   M   A AATEL   A  D R  I     VPVLGWV +NI      Q+  M  K
Sbjct: 143 SAAALAGMPEQADAATELMQTAGLDARILIFGAF-VPVLGWVAYNILKPGLNQIEDMQKK 201

Query: 403 N--KRAVPAAV-GMGAAASLLFAQSAEASTEI 489
           N  KR V A V G+ AAA L   + A+A+TE+
Sbjct: 202 NAKKRGVAAGVTGLSAAALLGMPEQADAATEL 233

[4][TOP]
>UniRef100_C1E7Y4 Photosystem II PsbY protein n=1 Tax=Micromonas sp. RCC299
           RepID=C1E7Y4_9CHLO
          Length = 191

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
 Frame = +1

Query: 223 SVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQM--D 396
           S AA   M   A AATE   LA  D R  I     VPVLGWVG+NI G    QL +M  D
Sbjct: 56  SAAALMGMPEAADAATEAMQLADLDARIAIFGAF-VPVLGWVGYNILGPGLKQLEKMQQD 114

Query: 397 AKNKRAVPAAVGMGAAASLLFAQSAEASTE 486
           A  K+ V A VG+ AAA +   ++A+A+TE
Sbjct: 115 AAKKKGVAAGVGLSAAALMGMPEAADAATE 144

[5][TOP]
>UniRef100_A9U315 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp.
           patens RepID=A9U315_PHYPA
          Length = 137

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
 Frame = +1

Query: 199 VGTVATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQA 378
           V  V T  ++ A+   + +A A+ ++ +LA  DNR   L   L+P +GWV FNI   LQ 
Sbjct: 2   VNLVCTTGAMFAAMATSESAMASQQIMALAEGDNRVVALLIPLIPAIGWVLFNI---LQP 58

Query: 379 QLNQMD-AKNKRAVPAAVGMGAAASLLFAQSAEASTE 486
            LNQ+D  +  +A+ A  G+GAAA+L+ A  A+A+ E
Sbjct: 59  ALNQVDKMRGAKALVAGAGLGAAATLMAAPHADAAQE 95

[6][TOP]
>UniRef100_Q00Y99 Manganese-binding protein PsbY, photosystem II-associated-s (ISS)
           n=1 Tax=Ostreococcus tauri RepID=Q00Y99_OSTTA
          Length = 265

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
 Frame = +1

Query: 49  VKMAALRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGTVATLSSV 228
           V + ALR S     A R   R AK     R A+ S V    A+ E             S+
Sbjct: 5   VNVPALRASRAAPLAKRE--RRAK-----RTAIASKVATKVATIESDEIVTRGQTAAMSL 57

Query: 229 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKN- 405
           AA+ + A  A AA E+  LA  D R  I   +  PVLGWV +NI G    Q   M  KN 
Sbjct: 58  AATMLFADQAHAAQEVGDLAGIDGRIAIFF-VFAPVLGWVAYNILGPGLRQFEDMQKKNA 116

Query: 406 -KRAVPAAVGMGAAASLLFAQSAEASTEI 489
             + V A  G+ AAA L   ++++A+ ++
Sbjct: 117 KSKGVLAGAGLSAAALLGMPEASDAAEKL 145

[7][TOP]
>UniRef100_A9SPH7 PsbY photosystem II polypeptide n=1 Tax=Physcomitrella patens
           subsp. patens RepID=A9SPH7_PHYPA
          Length = 368

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
 Frame = +1

Query: 196 KVGTVATLSSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQ 375
           K G +  L    AS  +A +A AA E+A+LA SD+R  I+  LL+P +GWV FNI     
Sbjct: 205 KRGVIGALGLGTASLFLAPHADAAQEIATLADSDSRGLIIIGLLLPAVGWVLFNILKPAL 264

Query: 376 AQLNQMDAKNKRAVP-----------AAVGMGAAA-SLLFAQSAEASTE 486
            Q+N +   N    P            A G+ AAA SLL A  A+A  +
Sbjct: 265 NQINNIVEGNDTGAPVKRGKKFGGMIGATGISAAAMSLLAAPKADAQVQ 313

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 2/148 (1%)
 Frame = +1

Query: 52  KMAALRMSAPTSAALRSSVRSAKPVLPVR-RAVRSVVVRAQASEEQLGFKVGTVATLSSV 228
           K+ ALR S      ++    +   V  V  RAV    +   +        VG  A   ++
Sbjct: 11  KLTALRRSNAFGVGVQGIRATNLKVSAVSTRAVPCAKLSTSSDGVAQQISVGANALAGAM 70

Query: 229 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMD-AKN 405
            A+   + +A A+ ++ +LA  DNR   L   LVP +GWV FNI   L+  LNQ+D  K 
Sbjct: 71  FAAMATSESALASQQIMALAEGDNRVVALLIPLVPAIGWVLFNI---LKPALNQVDKMKA 127

Query: 406 KRAVPAAVGMGAAASLLFAQSAEASTEI 489
            +++ A  G+GA A L+ A  A+A+ EI
Sbjct: 128 AKSLVAGAGLGALA-LVAAPHADAAQEI 154

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
 Frame = +1

Query: 229 AASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNI-------FGSLQAQLN 387
           A + + A +A AA E+A +A SD R  I+  LL+P +GWV FNI          +Q Q N
Sbjct: 139 ALALVAAPHADAAQEIAQVADSDARGLIIIGLLLPAVGWVLFNILRPALNQIEKMQDQGN 198

Query: 388 QMDAKNKRAVPAAVGMGAAASLLFAQSAEASTEI 489
                 KR V  A+G+G  ASL  A  A+A+ EI
Sbjct: 199 AAAITRKRGVIGALGLG-TASLFLAPHADAAQEI 231

[8][TOP]
>UniRef100_B6SQV2 Photosystem II core complex proteins psbY n=1 Tax=Zea mays
           RepID=B6SQV2_MAIZE
          Length = 191

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
 Frame = +1

Query: 46  LVKMAALRMSAPTSAALRSSVRSAKPVLPVR--RAVRSVVVRAQASEEQLGFKVGTVATL 219
           +  MA L+ +A  +A    S  S    L VR  +A +   +   AS    G      A L
Sbjct: 4   IATMALLKPAAKAAARSAPSTSSGSVSLRVRTGQAAKKAALSVSASSTLAG------AFL 57

Query: 220 SSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDA 399
           +++A+S     +A  A   A+ A  D+R  +L  ++ P +GWV +NI      QLN+M  
Sbjct: 58  AALASS----PDAALADVAAADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRM-- 111

Query: 400 KNKRAVPAAVGMGAAASLLFAQSAEASTEI 489
           ++ +AV A +G+GAAA+   A   EAS  +
Sbjct: 112 RSSQAVAAGLGLGAAAAAGMAAPPEASAAV 141

[9][TOP]
>UniRef100_B6SUJ7 Photosystem II core complex proteins psbY n=1 Tax=Zea mays
           RepID=B6SUJ7_MAIZE
          Length = 196

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
 Frame = +1

Query: 46  LVKMAALRMSAPTSAALRSSVRSAKPVLPVRRAVRS--VVVRAQASEEQLGFKVGTVATL 219
           +  +A + +  P     RS+  S    + +R   R+    V A  S    G     +A+ 
Sbjct: 1   MATIATMALLKPARIVARSAPPSTSGSVSLRVPARAKKAAVSASVSSALAGAFFSALASS 60

Query: 220 SSVAASWMMAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDA 399
            +  A+  +A  A AA      A SDNR  +L  ++ P +GWV +NI   LQ  LNQ++ 
Sbjct: 61  DAALAAQRVADVAAAAD-----AGSDNRGQLLLFVVAPAIGWVLYNI---LQPALNQLNR 112

Query: 400 KNKRAVPAAVGMGAAASLLFAQSAEAS 480
              +AV A +G+GAAA+ + A + EAS
Sbjct: 113 MRSQAVVAGLGLGAAAAGM-AAAPEAS 138

[10][TOP]
>UniRef100_A4S5C8 Possible psbY, PSII-Y, photosystem II polypeptide n=1
           Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S5C8_OSTLU
          Length = 416

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
 Frame = +1

Query: 64  LRMSAPTSAALRSSVRSAKPVLPVRRAVRSVVVRAQASEEQLGFKVGTVATLSSVAASWM 243
           + + A   A  R + R+A+    + RA  S VV  + + +    + G  A +++ AAS  
Sbjct: 9   ITLPARAPARARRTARTAQSARVIARARTSAVVEDEFATDDDVVRRGQTAAMAT-AASMF 67

Query: 244 MAGNAQAATELASLAASDNRAGILATLLVPVLGWVGFNIFGSLQAQLNQMDAKN-----K 408
            A  A AA EL   A  D R  I   +  PVLGWV +NI      QL  M A N     K
Sbjct: 68  FADRADAAQELMQTAL-DGRPLIFLAVFGPVLGWVAYNILSPGLRQLENMQAVNAKSSKK 126

Query: 409 RAVPA-AVGMGAAASLLFAQSAEASTEI 489
           RA  A A G+ A+A +   ++++A+  +
Sbjct: 127 RAAGALAGGLTASALMGMPEASDAAQNV 154